<?xml version="1.0" encoding="UTF-8"?>
<uniprot xmlns="http://uniprot.org/uniprot"
 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 xsi:schemaLocation="http://uniprot.org/uniprot http://www.uniprot.org/docs/uniprot.xsd">
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM94</accession>
    <name>A0A0Q8UM94_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19825</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895899.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46123">
        <property type="protein sequence ID" value="KRC46123"/>
        <property type="gene ID" value="ASE19_19825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1451192at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="203" mass="21785" checksum="3CFDC3E238CF2460" modified="2016-01-20" version="1">MGAKFWMVVYADGPVPPLLRAGSELDEEATEALVARLHPGATLTGLGYGDLLDHPNPPENEAWAAVHDGVAIVCTTRVALDRATDITPTIVGAMPGRTTYVAAMHSVVDWFAFAIWGPDGELVRALSLSPDDGVIENIGEPLAFEAPYWAGEHAEDDDYPLPFHPLELGEDAIGQLFGFCYEGMLPPDAIDVEDVTLLGFRIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMC7</accession>
    <name>A0A0Q8UMC7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Signal recognition particle receptor FtsY</fullName>
            <shortName evidence="5">SRP receptor</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ftsY</name>
        <name evidence="8" type="ORF">ASE19_20130</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Peripheral membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GTP-binding SRP family. FtsY subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895949.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46174">
        <property type="protein sequence ID" value="KRC46174"/>
        <property type="gene ID" value="ASE19_20130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="656414at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031226">
        <property type="term" value="C:intrinsic component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006614">
        <property type="term" value="P:SRP-dependent cotranslational protein targeting to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00920">
        <property type="entry name" value="FtsY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013822">
        <property type="entry name" value="Signal_recog_particl_SRP54_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004390">
        <property type="entry name" value="SR_rcpt_FtsY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036225">
        <property type="entry name" value="SRP/SRP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000897">
        <property type="entry name" value="SRP54_GTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042101">
        <property type="entry name" value="SRP54_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43134:SF7">
        <property type="entry name" value="PTHR43134:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00448">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02881">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00962">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00963">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47364">
        <property type="entry name" value="SSF47364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00064">
        <property type="entry name" value="ftsY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00300">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 5" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="domain" description="SRP54" evidence="7">
        <location>
            <begin position="354"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="189"/>
            <end position="196"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="271"/>
            <end position="275"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="333"/>
            <end position="336"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS00300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="381" mass="39760" checksum="EB74B22B9BBD239C" modified="2016-01-20" version="1">MHDWLYLIIGIAVVGVLAIAGFVTARVRRPGRLPEQAPTDVIAPAPTDTVEAPTAPTVEAPVTEAPAEPAAPTVETPEKPASRLVRLRQRLAGSNALGRSLLGLLSRDQLDEDTWEAIEDLLLAADIGVAPTQELVERLRSRLRVEGGQVADARAVLREELINLVDPTMDRALQVSGTDGAPGVVLVVGVNGTGKTTTVGKIARILVADERTALLAAADTFRAAAADQLSTWGERVGVEVVRGPEAGDPASVAFDAVKEGIDRGVDTVVVDTAGRLQNKAGLMDELGKVKRVIEKQTPVTEVLLVLDATTGQNGLIQAKVFSEVVDVTGIALTKLDGSAKGGIVVAVQRQLGVPVKLVGLGEGPDDLAPFDPAAFVDALLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMQ8</accession>
    <name>A0A0Q8UMQ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20775</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896049.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46278">
        <property type="protein sequence ID" value="KRC46278"/>
        <property type="gene ID" value="ASE19_20775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1389630at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017523">
        <property type="entry name" value="CHP03089"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03089">
        <property type="entry name" value="TIGR03089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="243" mass="25623" checksum="1F2F36937D097E2E" modified="2016-01-20" version="1">MTTGTPTTFHDVLSRRLRQDPGRPLVTFYDHETGERVELSVTTWANWVAKAGSLLVDELGLERGDRIGIDLPPHWLGTVFLGAAWSAGLVVVPEPEVGSDLAAVVCGPDRVEGWAGEAPDTAVLACALLPLGVRFKDPLPAGVNDVGVEIWSQPDAFTPWDPPTGDDLAIAPGTSQAELWREAAAGTLVGGGRLLSVANPVTEPASFCEPLTQGGSLVLVARAVQQLLEAAYTAERATARFPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMR3</accession>
    <name>A0A0Q8UMR3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_20565</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896015.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46244">
        <property type="protein sequence ID" value="KRC46244"/>
        <property type="gene ID" value="ASE19_20565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1811367at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070122">
        <property type="term" value="F:isopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140492">
        <property type="term" value="F:metal-dependent deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028090">
        <property type="entry name" value="JAB_dom_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000555">
        <property type="entry name" value="JAMM/MPN+_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037518">
        <property type="entry name" value="MPN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14464">
        <property type="entry name" value="Prok-JAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00232">
        <property type="entry name" value="JAB_MPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50249">
        <property type="entry name" value="MPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="MPN" evidence="6">
        <location>
            <begin position="2"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="148" mass="16394" checksum="B18B566B8BF73090" modified="2016-01-20" version="1">MLQIDQATYDALVEHAKRDHPVEACGMVVGPIGSDRPARHVEMVNAAGSPTFYEYDSTDLFQLYKEMDDRDEEPVVIYHSHSATEAYPSVTDINLAGEPGAHYVLVSTREHGNNPGPVEFRSYRIIDGVVTEEEVTIVDTVIPSEESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMX2</accession>
    <name>A0A0Q8UMX2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Radical SAM protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21165</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896119.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46348">
        <property type="protein sequence ID" value="KRC46348"/>
        <property type="gene ID" value="ASE19_21165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1514287at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018768">
        <property type="entry name" value="DUF2344"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10105">
        <property type="entry name" value="DUF2344"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03936">
        <property type="entry name" value="sam_1_link_chp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2344" evidence="1">
        <location>
            <begin position="15"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="239" mass="25291" checksum="44A55569AA14EEF3" modified="2016-01-20" version="1">MSRQQPEQQAPPVQKLRIRYAKRGRLRFTSHRDVSRAIERGVVRAAIPMAYSSGFHPHPRISYAGASPTGAASEAEYVELGLAEVRDPAEIGAALDAVLPDGLDVVATVDAAASTAGSLSDLLTASHWLIDLGDTPTEQVAAAVAAFLGTESVTVERMTKKGLRSFDCRAAVVRLAVTADGALDLLLEHTVPAVRPDDVLTGLREVGGLDVPLTALLTRLAQGVLDRTDESIGDPLALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMY0</accession>
    <name>A0A0Q8UMY0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">LysR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_19860</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895903.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46127">
        <property type="protein sequence ID" value="KRC46127"/>
        <property type="gene ID" value="ASE19_19860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="990666at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359246" evidence="2">
        <location>
            <begin position="25"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="domain" description="HTH lysR-type" evidence="3">
        <location>
            <begin position="2"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="296" mass="31499" checksum="B299CB25F6A25FEB" modified="2016-01-20" version="1">MIDLDALAGLRAVATHGSVVAAAAATGFTPSAISQQVKRLERQTGVPLLERVGRGVMLTSHGQHLVDAGEQVLNDLEQLEASLQQRAGVVAGRVRLAAFSTAMRGLIAPIARALRDAHPDLVLTLDEREPWDVVDLISSGQAELGIVHRWGGVPLAVPDHVIATPVATDLAELIVHRDDPLAARPRVTPQDLVDVGWIATPEGTICRQWLSRMYDGTGRPPRIAHVSGEFESHLALVRAGLGVALVPRMGRAPLGDDLVAVPVVDPEPIRLVDALHRRTMADSPAVQAVLAAFSQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN37</accession>
    <name>A0A0Q8UN37_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pilus assembly protein TadE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21485</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896176.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46406">
        <property type="protein sequence ID" value="KRC46406"/>
        <property type="gene ID" value="ASE19_21485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1810147at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012495">
        <property type="entry name" value="TadE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07811">
        <property type="entry name" value="TadE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="129" mass="13331" checksum="88CD2C38CE3A708E" modified="2016-01-20" version="1">MGRRRHDQRGSALVDFTLVTVVLLPVVLGILQVALVLHVRTTLAAAASEGARLAATSGSSPGDGVARTREQIAESVGGRYAEDVDVRRVTVAGAPAVEISVHAKVPALGLGGPAVEFTVFGRAVVEDPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN72</accession>
    <name>A0A0Q8UN72_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_21675</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896208.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46438">
        <property type="protein sequence ID" value="KRC46438"/>
        <property type="gene ID" value="ASE19_21675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041490">
        <property type="entry name" value="KstR2_TetR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17932">
        <property type="entry name" value="TetR_C_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="5">
        <location>
            <begin position="20"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="23094" checksum="6DFB27E7243151E5" modified="2016-01-20" version="1">MSERVAKSGRTLPSGEARPIYNLDLLLDVAVRVFTERGYDGTSFAHLSEASGLSKSSIFHHIDSKEQLLRLGLDRALDPLMASTEDDAALTGPAIDRLTYLVRRNLEIMAERLPYVKLLLNVHGNTDTERWALEQRRAYDKFVAGVVEDAIAEGTVRADIDARTTARLLFGMSNSVREWYRPERHTKPAELADQVCSIVLDGIRVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNJ8</accession>
    <name>A0A0Q8UNJ8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">S5A_REDUCTASE domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_22495</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896343.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46574">
        <property type="protein sequence ID" value="KRC46574"/>
        <property type="gene ID" value="ASE19_22495"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001104">
        <property type="entry name" value="3-oxo-5_a-steroid_4-DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010721">
        <property type="entry name" value="DUF1295"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32251">
        <property type="entry name" value="PTHR32251"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06966">
        <property type="entry name" value="DUF1295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50244">
        <property type="entry name" value="S5A_REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="67"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="136"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="177"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="222"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="S5A_REDUCTASE" evidence="6">
        <location>
            <begin position="204"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="299" mass="33177" checksum="162FA7E8051DC95B" modified="2016-01-20" version="1">MTQLSKTASLVRVGLAYLVAFGAATVWLVAGPDTEWWWLDGLVADLVATVVVFGASRLLHNSSCYDPYWSVLPPFLVGFWFLAARDVVGVSDERSVLLVVVVAVWAIRLTGNWLHDWPGLHHEDFRYPEVRASAGRFALAADFVGIHLVPTLIVFLGLVPAYAVLTRPGDDLGWLDGVALVVGIGAPVLQFVSDAQMRAFIKVRQPGQAMEQGLWAWSRHPNYFGEVAFWWSLALFGIAGAPGDWWWLVVGGVAMTAMFEGASIPMMEKRSLERRPTYQDVIDRVPRLVPRPPRRRTPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNV1</accession>
    <name>A0A0Q8UNV1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MPAB_Lcp_cat domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22015</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896265.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46495">
        <property type="protein sequence ID" value="KRC46495"/>
        <property type="gene ID" value="ASE19_22015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="624204at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037473">
        <property type="entry name" value="Lcp-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018713">
        <property type="entry name" value="MPAB/Lcp_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37539">
        <property type="entry name" value="PTHR37539"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09995">
        <property type="entry name" value="MPAB_Lcp_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MPAB_Lcp_cat" evidence="2">
        <location>
            <begin position="139"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="418" mass="46104" checksum="DE3C201BBE92A30C" modified="2016-01-20" version="1">MTTELATAAGTPTGPSYPTRFRAGGDRNRRLGRPLKVVGRVKAVDEELLNRIGAAMNERDELGGRLADAIRLRAGTPGKIEMAQFRQALAGGIGSVPDAPPALVEFFAEVQAEPDWLDRALVEEGAAVMRRLGQNAQDVLLQLSLVGGYRFGGPTDLLVATGGLTGGQTLRRLAETQKWGASLTNPASLVPVDGEAWRLTVHVRLMHALVNHAFEDQWDAATWGLPINQADQASTLGLFDGVLIIGARALGVPVSQRESRALMHLWKYVGWLMGVHEDFLVDDEWERHRIDYHVLLAQGPITDAGPQLAQAVVDAQAERSYPGWPAPLQGARARYERERLLSMLTVFLGPESMRELGLPMRPPWAHAYLFGLNTLRYRVLGHLPGGRDRLWRWGGRRAQWLLDSYFQGEREDVGKLTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UTB5</accession>
    <name>A0A0Q8UTB5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19965</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895923.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46147">
        <property type="protein sequence ID" value="KRC46147"/>
        <property type="gene ID" value="ASE19_19965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1472466at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="395"/>
            <end position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="418" mass="46131" checksum="7750AD31AA7ACBCD" modified="2016-01-20" version="1">MSQESVEPQRPTFDGPPLSLEEELAAAKAEPEAGPSIETVNESLKDGLNRCPKCGSTDVQLRGSTGMLICLFCRNEWQEARVEEEFGLGEGIDQLEGTIIASGAEDIAADAADMVTFKCEACGAEVVVDTAHSLNARCHWCRHTLNVNTQIPNGAVPDAVLPFRLTKDEAVEKIRAFASKRRLFAHKRFKKEFIPENVLGVYLPYLVIDARAQSQYWGKGEVQTRRWTEKQGDNTVTYYAADVYQVARQVSFTVDDLTVEGAAERADFSSGNTNNIVNTILPFDTKNAVKWNASYLVGFTSEKRNLNVEALKPVLEDQLLSIGRSQVHSSLGRFDRGVRWEQEQLDVGGSRWVSMYLPVWLYSYRQESNGLLHYIAVNARTGETMGSIPVSQPKLLLAAFTVGTFLEGVAGAILVATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU77</accession>
    <name>A0A0Q8UU77_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21390</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896158.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46387">
        <property type="protein sequence ID" value="KRC46387"/>
        <property type="gene ID" value="ASE19_21390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1959349at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="196" mass="20915" checksum="4024E5AF7BB70BFE" modified="2016-01-20" version="1">MAKYVLQPNEAPILTATGVRGGDGLMSAFTDEIVLTNLHLIWLRKGMIGNVKNIEYFPLALLKVIDGRAQALLTKSRNGMDQLELFFQHDQKAFGFQTGGKREINEWMRAINRAVTGDELPPEATSSSGVLPGAKAAAESLMGAVRDRAQRAKRPTLGQVPAAPTAMACPGCSAPLSGLSGTVVRCGFCGTESTLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUG5</accession>
    <name>A0A0Q8UUG5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Methylmalonate-semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_17985</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893212.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48811">
        <property type="protein sequence ID" value="KRC48811"/>
        <property type="gene ID" value="ASE19_17985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="490746at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004491">
        <property type="term" value="F:methylmalonate-semialdehyde dehydrogenase (acylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07085">
        <property type="entry name" value="ALDH_F6_MMSDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010061">
        <property type="entry name" value="MeMal-semiAld_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43866">
        <property type="entry name" value="PTHR43866"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01722">
        <property type="entry name" value="MMSDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="3">
        <location>
            <begin position="17"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="496" mass="52242" checksum="C4011F2892E4CD9F" modified="2016-01-20" version="1">MSTRISHWIEGRTVAGTSGRTAAVHNPATGAVTGEVDLASTAEVSAAVATAVSAAQQWRSSSLSQRAAVLFAFRQLLHERSDDLARIITAEHGKVHSDALGEIARGLENVEFATGVPQLLKGGFSEQAATGVDVYNIRQPLGVVAGITPFNFPAMVPLWMCANAIACGNAFVLKPSEKDPSSALFLAQLWKEAGLPDGVFTVLHGDKEAVDALLTHPDVAAVSFVGSTPIAQYIYETGTAHGKRVQALGGAKNHALVLPDADLDVAADAIVSAAYGAAGERCMALSVAVAVGEIADPLVEAIALRLPKLVVGNGADAGTDMGPLITREHRDKVASYVDSGEEQGATVVVDGRTADVPADGFFLGTTLLDNVTPDMTCYRDEIFGPVLGVVRVETYEQGLELINGNRYANGTAIFTRDGGAARQFQFDVEVGMVGINVPIPVPVAYYSFGGWKDSLFGDTHMYGPEGINFYTRGKVVTSRWPDPATSSVDLGFPRTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUQ8</accession>
    <name>A0A0Q8UUQ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LLM class F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893324.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48923">
        <property type="protein sequence ID" value="KRC48923"/>
        <property type="gene ID" value="ASE19_18620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019952">
        <property type="entry name" value="F420_OxRdatse_Rv1855c_pred"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03560">
        <property type="entry name" value="F420_Rv1855c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="8"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="312" mass="34273" checksum="FF9B16D2030278E6" modified="2016-01-20" version="1">MELRVFTEPQQGATYDDLLSVALEAERLGFGAFFRSDHYLHMSGDGLPGSTDAWTTLAGLARDTTTIRLGTMMTSATFRYPGVLAIQVAQVDQMSGGRVELGIGAGWFTQEHAAYGIEFPDTAERFERYAEQLELITGLWATPVGGRYEFTGEHYQLTDSPALPKPVQSSGHRGGVPVLIGGKGARKTPALAARYADEFNLPFVDEEFTELQFGRVRRAAEEIGRDPDELTWSNALVLCVGEDEAEIARRAAAIGREVDELRVNGLAGTPEEVVEKIKRFEALGSQRIYLQTLDLGDLDHLRLVAAEVMPHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUU0</accession>
    <name>A0A0Q8UUU0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acyl-phosphate glycerol 3-phosphate acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18210</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893253.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48852">
        <property type="protein sequence ID" value="KRC48852"/>
        <property type="gene ID" value="ASE19_18210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1756450at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PlsC" evidence="1">
        <location>
            <begin position="34"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="222" mass="23816" checksum="8CFAE019E6196923" modified="2016-01-20" version="1">MLYAALHATVPPLARALWRPTIEGVDNVPADGAVLFASNHLSFADSVVIPIVAPRKVVFLAKAEYFTGSGLKGRLSKAWFEGLGMVPVDRSDTRAALNSLDVALEVLGRGEAFGIYPEGTRSRDGRLYRGRTGVAQLALTAGVPVVPVGLIGTDALQPVDSRWPRRAKVTVRFGRPLDFTGRFDGVAPGRARREATDEIMDAIHALTGQELAGAYNERPIDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUZ0</accession>
    <name>A0A0Q8UUZ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Shikimate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_19210</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893421.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49019">
        <property type="protein sequence ID" value="KRC49019"/>
        <property type="gene ID" value="ASE19_19210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1054867at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004764">
        <property type="term" value="F:shikimate 3-dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041121">
        <property type="entry name" value="SDH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013708">
        <property type="entry name" value="Shikimate_DH-bd_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022893">
        <property type="entry name" value="Shikimate_DH_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21089">
        <property type="entry name" value="PTHR21089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18317">
        <property type="entry name" value="SDH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08501">
        <property type="entry name" value="Shikimate_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Shikimate_dh_N" evidence="3">
        <location>
            <begin position="11"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="domain" description="SDH_C" evidence="4">
        <location>
            <begin position="237"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF18317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC49019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="273" mass="27371" checksum="792F86E74108F3CE" modified="2016-01-20" version="1">MTSADAPRFGVVGDPIAHSLSPVLHRAGYDALGIDARYDAVQVPAGGLAAHVAALGPEWGGLSVTAPLKREALALATTVTARATLAGGANTLVRTADGWAADNTDLPGAVAAIRERYDGPASVATIVGAGATAASTGLALADLGVRTIRLLARDPSRAEETAAALAADPRLAIDVLPLDGAGIVGEIVVSTIPVAAQDDALVAATCGAAVVFEVVYDPWPSPLAAAAVERGQALVSGLDLLVHQAVLQFAMFTGHNGPLDSMRAAGEQALASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV80</accession>
    <name>A0A0Q8UV80_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Lipoyl synthase</fullName>
            <ecNumber evidence="6">2.8.1.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Lip-syn</fullName>
            <shortName evidence="6">LS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Lipoate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Lipoic acid synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Sulfur insertion protein LipA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lipA</name>
        <name evidence="8" type="ORF">ASE19_18545</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>[[Fe-S] cluster scaffold protein carrying a second [4Fe-4S](2+) cluster] + 4 H(+) + N(6)-octanoyl-L-lysyl-[protein] + 2 oxidized [2Fe-2S]-[ferredoxin] + 2 S-adenosyl-L-methionine = (R)-N(6)-dihydrolipoyl-L-lysyl-[protein] + 2 5'-deoxyadenosine + [[Fe-S] cluster scaffold protein] + 4 Fe(3+) + 2 hydrogen sulfide + 2 L-methionine + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:16585"/>
            <dbReference type="Rhea" id="RHEA-COMP:9928"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="Rhea" id="RHEA-COMP:14568"/>
            <dbReference type="Rhea" id="RHEA-COMP:14569"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
            <dbReference type="ChEBI" id="CHEBI:29919"/>
            <dbReference type="ChEBI" id="CHEBI:33722"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:78809"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="EC" id="2.8.1.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 2 [4Fe-4S] clusters per subunit. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Protein modification; protein lipoylation via endogenous pathway; protein N(6)-(lipoyl)lysine from octanoyl-[acyl-carrier-protein]: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the radical SAM superfamily. Lipoyl synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.8" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893312.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48911">
        <property type="protein sequence ID" value="KRC48911"/>
        <property type="gene ID" value="ASE19_18545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1184806at2"/>
    <dbReference type="UniPathway" id="UPA00538">
        <property type="reaction ID" value="UER00593"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016992">
        <property type="term" value="F:lipoate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102552">
        <property type="term" value="F:lipoyl synthase activity (acting on glycine-cleavage complex H protein"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102553">
        <property type="term" value="F:lipoyl synthase activity (acting on pyruvate dehydrogenase E2 protein)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009249">
        <property type="term" value="P:protein lipoylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00206">
        <property type="entry name" value="Lipoyl_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003698">
        <property type="entry name" value="Lipoyl_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10949">
        <property type="entry name" value="PTHR10949"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005963">
        <property type="entry name" value="Lipoyl_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00271">
        <property type="entry name" value="lipoyl_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00510">
        <property type="entry name" value="lipA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="67"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="292"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC48911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="314" mass="35369" checksum="99BDCCF03DF56411" modified="2016-01-20" version="1">MTAAPEGRKLLRLEVRNAETPIERKPSWIKTRAKMGPEYTALQKLVKSEGLHTVCQEAGCPNIFECWEDREATFLIGGDQCTRRCDFCQIDTGKPQPLDRDEPRRVAESVQQMELKYATITGVARDDLADGGAWLYAETVRAIHELNPDTGVENLIPDFNGRPELLAEVFESRPEVLAHNVETVPRIFKRIRPAFRYERSLDVLTQARAFGLVTKSNLILGMGETREEVSQALRDLHEAGCELVTITQYLRPSPRHHPVERWVKPEEFVELAAEAEEIGFAGVLSGPLVRSSYRAGRLYRQAMAARDARAEATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVE2</accession>
    <name>A0A0Q8UVE2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_19040</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893393.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48991">
        <property type="protein sequence ID" value="KRC48991"/>
        <property type="gene ID" value="ASE19_19040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1986265at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359464" evidence="3">
        <location>
            <begin position="27"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="190"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="159"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="23459" checksum="743C6CD7332A7283" modified="2016-01-20" version="1">MIRRLAVPIGAIAAAVVTLVAAPAHADDEIGLSRDGVTWSTELTAPLFDPDFRFVPGDQEVRSFRVRNDGPSAGVLTVDVIASDPDLLLADDDFTLEARIGNGPWLSVGAGTTRAVTELKVAEGAQTRVSVRATFDWDSTRQVQSVPFRVHLNLAEDGDVGGVDNGNGDGDGGDGDVGGEDDALPSTGAAVAPGLLWLAAGLIGSGLALLRRRDRREEASNHVQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVU6</accession>
    <name>A0A0Q8UVU6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Beta-ketoadipyl CoA thiolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_21635</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896202.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46432">
        <property type="protein sequence ID" value="KRC46432"/>
        <property type="gene ID" value="ASE19_21635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="550338at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020615">
        <property type="entry name" value="Thiolase_acyl_enz_int_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020610">
        <property type="entry name" value="Thiolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00098">
        <property type="entry name" value="THIOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00099">
        <property type="entry name" value="THIOLASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="5">
        <location>
            <begin position="5"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="6">
        <location>
            <begin position="266"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="3">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="344"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="388" mass="40543" checksum="5D1FFD1BDC9FD051" modified="2016-01-20" version="1">MPEAFILDGVRTPIGRYGGALAQTRPDDLAALVVRTAVERSGIDPADIDEVVFGAANQAGEDNRNVARMATLLAGLPDTIPGFTVNRLCASGLTAIATARQMIAAGDADVVLAGGVESMTRAPWVSEKPSRPWAKPGQSWDTSIGWRFTNPAFDTDTTLSMPQTAERVAEQWGLKREELDAFALRSHERALDAQKNGRFDAEIVAVGEMTRDEGPRADTTAEKLAGLRPIHGPGGVITAGNSSSLNDGAAAVVLVSDRYAAAKGLQPRARVVAGANAGVAPDIMGIGPVPATRRVLERAGWASGVLDAVELNEAFAAQALACMRELALDEEIVNAEGGAIALGHPLGCSGTRITLTLLNRLERTGGRRGLATMCVGVGQGSALLLERP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXP0</accession>
    <name>A0A0Q8UXP0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15675</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893528.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50059">
        <property type="protein sequence ID" value="KRC50059"/>
        <property type="gene ID" value="ASE19_15675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="675549at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002878">
        <property type="entry name" value="DUF35_OB-fold_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022002">
        <property type="entry name" value="DUF35_Znr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12172">
        <property type="entry name" value="DUF35_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01796">
        <property type="entry name" value="OB_aCoA_assoc"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OB_aCoA_assoc" evidence="1">
        <location>
            <begin position="64"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="DUF35_N" evidence="2">
        <location>
            <begin position="187"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="domain" description="OB_aCoA_assoc" evidence="1">
        <location>
            <begin position="222"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="34484" checksum="EDBAE9DAD06373A4" modified="2016-01-20" version="1">MSRTLQAPVTVAFDYTRSTGPVVGRFLSGLRDGVVVGARTSTGQVVVPPLEFDPVTHEATTEFVEVSSVGTVTSWTWVPEPVKGQPFDRPFAFALVTLDGADVPFLHALDVSSPAEVTTGMRVRVRWAAERVGHINDIACFEPLAPGEAAATAPAASSSEPVTGVVTEVSLDYDYAASPEESLFYRGLNEGRIMGQRCPTCQKVYVPPRSACPSDGTPTAEEVELSQTGTITTFCIVNVPFLGQKITPPYVSAYVLLDGADIAVLHLILGVPADEVRMGMRVRAVWKPEEEWAYSLENIDHFAPTGEPDADYDTYKHHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYF1</accession>
    <name>A0A0Q8UYF1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 15">tRNA (guanine-N(1)-)-methyltransferase</fullName>
            <ecNumber evidence="6 15">2.1.1.228</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13 15">M1G-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="14 15">tRNA [GM37] methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="primary">trmD</name>
        <name evidence="17" type="ORF">ASE19_20055</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <reference evidence="17 18" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 15">Specifically methylates guanosine-37 in various tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>guanosine(37) in tRNA + S-adenosyl-L-methionine = H(+) + N(1)-methylguanosine(37) in tRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:36899"/>
            <dbReference type="Rhea" id="RHEA-COMP:10145"/>
            <dbReference type="Rhea" id="RHEA-COMP:10147"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:73542"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="EC" id="2.1.1.228"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5 15">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 15">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 15">Belongs to the RNA methyltransferase TrmD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.228" evidence="6 15"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895937.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46162">
        <property type="protein sequence ID" value="KRC46162"/>
        <property type="gene ID" value="ASE19_20055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="525632at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052906">
        <property type="term" value="F:tRNA (guanine(37)-N(1))-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd18080">
        <property type="entry name" value="TrmD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1270.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00605">
        <property type="entry name" value="TrmD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002649">
        <property type="entry name" value="tRNA_m1G_MeTrfase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023148">
        <property type="entry name" value="tRNA_m1G_MeTrfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016009">
        <property type="entry name" value="tRNA_MeTrfase_TRMD/TRM10"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46417">
        <property type="entry name" value="PTHR46417"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01746">
        <property type="entry name" value="tRNA_m1G_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00088">
        <property type="entry name" value="trmD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 15" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 15" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 15" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="10 15" id="KW-0808">Transferase</keyword>
    <keyword evidence="12 15" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="16">
        <location>
            <begin position="236"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="15">
        <location>
            <begin position="134"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00014679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00033392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KRC46162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="384" mass="42314" checksum="30F527EE4F784F52" modified="2016-01-20" version="1">MRLDYLTIFPDFFAPLDLSLPGKAAGKRLVEFHVHDLRGYSHDKHHRVDDTPYGGGAGMVMKPEPWGEAFDALGVDAGTTVVFTTPSGEPFDQRLAEELATREHLLFACGRYEGIDQRVIDHARERAEVREISLGDYVLNGGEVAALAITEAVVRLLPGFMGNAESLVEESHAEGGLLEYPVYTKPASWRGHDVPAVLRSGDHGKVAAWRHEEARRRTASRRPDLLHPSVLDDGTPIVRAVPGDAGEILTLQRACWLQEALANDTLDIPALQESLDDVRAGLEEWETWVVRRAGRLVGAVRGKLDGEDRWDIGRIMVAPDLQGSGLGRVLLEHIQAVAPDQATSYVLFTGAASARNQRMYRKAGFRIRPDLPGPPHAVTLTKRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYL5</accession>
    <name>A0A0Q8UYL5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF3152 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20550</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896013.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46242">
        <property type="protein sequence ID" value="KRC46242"/>
        <property type="gene ID" value="ASE19_20550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1478995at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022603">
        <property type="entry name" value="DUF3152"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11350">
        <property type="entry name" value="DUF3152"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359538" description="DUF3152 domain-containing protein" evidence="1">
        <location>
            <begin position="23"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3152" evidence="2">
        <location>
            <begin position="129"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="284" mass="31320" checksum="B6906E5CF1A11846" modified="2016-01-20" version="1">MTRLLGLVLALCCLVTAAPATAAVAGPEDPEQPPTLVQVEAPSITGVRRFGQTLVAEPGRWEPAPATVRYRWFRDGLALVGATTRRHPILPGDVGHRLTVRVTVARPEWTSAIASVTTGAILHRVDVRRVVRYTVRTKGVVRANVATFARLAQETYDDPRGWRARGVRFVRVRSGGTLTLWLAAAAQVPGFSSVCSSQWSCRVGRNVVINVERWKHASPAWNRAGRSLRDYRHMVVNHETGHWLGKGHASCPRRGALAPVMMQQSKGTAGCRLNPWPTLRELRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2Z4</accession>
    <name>A0A0Q8V2Z4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MDMPI_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18740</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893346.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48944">
        <property type="protein sequence ID" value="KRC48944"/>
        <property type="gene ID" value="ASE19_18740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1508083at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017517">
        <property type="entry name" value="CHP03083_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017520">
        <property type="entry name" value="CHP03086"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024344">
        <property type="entry name" value="MDMPI_metal-binding"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11716">
        <property type="entry name" value="MDMPI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03083">
        <property type="entry name" value="TIGR03083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03086">
        <property type="entry name" value="TIGR03086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MDMPI_N" evidence="1">
        <location>
            <begin position="19"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="188" mass="20886" checksum="58C0AB2129A6AF7A" modified="2016-01-20" version="1">MIPDGPAEEHRSVASTFGEKVRGVTDWDSPTPVADWQARDVVRHLVEWFPSFLADGTDIRLAPGPDVDTDPVAAWEHHAAAVQAVLDDPANAGVTFAHPRLPRMPLPQAVSQFYSSDVFMHTWDLARASGQDDRLDEDRCRTMVEGMAPMDEMLRQSGQYGARVPVADDAPWQDQLVGFIGRDPRWTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V313</accession>
    <name>A0A0Q8V313_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Protein-export membrane protein SecG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_15870</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">Involved in protein export. Participates in an early event of protein translocation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the SecG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893875.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50345">
        <property type="protein sequence ID" value="KRC50345"/>
        <property type="gene ID" value="ASE19_15870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2079628at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015450">
        <property type="term" value="F:protein-transporting ATPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004692">
        <property type="entry name" value="SecG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34182">
        <property type="entry name" value="PTHR34182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03840">
        <property type="entry name" value="SecG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01651">
        <property type="entry name" value="SECGEXPORT"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00810">
        <property type="entry name" value="secG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 10" id="KW-0653">Protein transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="55"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU365087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC50345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="78" mass="8046" checksum="79368F316589277E" modified="2016-01-20" version="1">MSTLLTVVLVIASLLLILLVLLHKGRGGGLSDMFGGGVSSSLGGSSVAERNLDRFTVGIGVIWFACVIALGLLLAYQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4E5</accession>
    <name>A0A0Q8V4E5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2,3-dihydroxybiphenyl 1,2-dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15465</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893867.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50339">
        <property type="protein sequence ID" value="KRC50339"/>
        <property type="gene ID" value="ASE19_15465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1335734at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="5"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="142"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="296" mass="33422" checksum="48EADFA81679BF59" modified="2016-01-20" version="1">MDIRSMGYIRVASTDLDAWKQFAGKVLGLAEGRGPNPAHQYWRVDEVSARIVVFPSDVDQLDCTGWEVADHQALQAAREHLQKAGVEFEEGTREELDERRVQELVRFRDPWDNVFELYHGITYEARPVVTPYAATFVTGDQGLGHIVVPVLDDVEALRFYTEVLGFRLRDSMSMPGEFVGKEPGSKVWLRFLGVNPRHHSLAFLPMPNPSKCVHVMLEVDKLDHVGRALERVRKHGAPLSATLGRHMNDEMISFYVRSPGGFDVEFGTEGMTVDDSRWVARESTAVSYWGHVFGGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5A3</accession>
    <name>A0A0Q8V5A3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09100</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894527.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52590">
        <property type="protein sequence ID" value="KRC52590"/>
        <property type="gene ID" value="ASE19_09100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="860559at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="5"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="283" mass="29386" checksum="B20DF9F54DDDA71A" modified="2016-01-20" version="1">MTKILDIAPLRSLVAVADCGGFQRAADHLHLSQGAVSQHVRRLEGAVGTKLVEKHGRGSRFTAGGERLVGHARQILAAHDDTLRAFAVEEVPQITIGSTEHAAAQLLPALAAALDAAGSRFRFRIDRGTRLREGLAAGSVDLALMLNTNDPDALVVGDLDLAWYSSPTWAPPVAPAPVPVVAFDSPCTLRSRALETLAAHGVPAVIGAEAIQLAGVQAAVGAGLGVALMATLGQTPEGLVRRDDLPTPEPIRLHVCSRPGLPTEAAEATAAALRPLLAVRSMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5G1</accession>
    <name>A0A0Q8V5G1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_09600</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894615.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52677">
        <property type="protein sequence ID" value="KRC52677"/>
        <property type="gene ID" value="ASE19_09600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="8"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="152"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="224" mass="23871" checksum="838479DBF9FB444A" modified="2016-01-20" version="1">MSRPAPIRVALIDDQPLVRMGLATLVAAEPDLELAGEAGDGREGLALLRRTKPDVVLCDIRMPVMDGLALLAEVAADPSLAGVKVVVLTTFELDEYVFEALRSGASGFLLKDAEPTALLDAVRVVADGGSLLAPSVTRRVIDHFGASRAESPHPRLGDLTEREREILGWVATGMSNAEIAGALVVSPDTVRTHVSRAMVKLQARDRAQLVVFAIESGLRRPPGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5S2</accession>
    <name>A0A0Q8V5S2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_09155</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the GMC oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894537.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52600">
        <property type="protein sequence ID" value="KRC52600"/>
        <property type="gene ID" value="ASE19_09155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="543793at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012132">
        <property type="entry name" value="GMC_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11552">
        <property type="entry name" value="PTHR11552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000137">
        <property type="entry name" value="Alcohol_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00623">
        <property type="entry name" value="GMC_OXRED_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00624">
        <property type="entry name" value="GMC_OXRED_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="4">
        <location>
            <begin position="84"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="5">
        <location>
            <begin position="270"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS00623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS00624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="613" mass="63820" checksum="5EC3F252ADE3DD6D" modified="2016-01-20" version="1">MGTAADFVVVGAGSAGAVVAARLSEDPAVQVVLIEAGGHPPAAELMPAAAPAVQLDKDTDWMFTAHAGGAGRGLAEGRMMVPRGKMLGGSSGMNYMAYVRGHPGDFDAWAAGGATGWGYDDVLPYFRKSEGLVPSDAIPVDAAAHGTDGPLGVSVRQPVLPGARAFVDAAVAAGIPEGDYNGHDRGGPDGVVSLLQTTTRDGRRASTYHAFLEGEVEQRPNLSIVTHGHATRIVLEGEAGALRATGVELIGDDGTRQTITARKEVLVCAGAVGSPQLLMLSGIGEREHLASYGIECLLDAPEVGRHLKDHLQLGVMFPAPGLGVSMAAIGVAMGPDALRAPAGPLPADPAEDAALPPELAVLRAEAERQLVEWFTTGTGLASSSLYDASAWFSTGLGDPHTHDAQIGLFACGYNADIWRGCLRVAPEEYFADPETVLSPMAESMIVLPNPVQPHSEGAIRLASSDPLAAPDIQMNYYDDPHDMAVMIATVRRALAIVEQLRTRHEIGDVHVPAALAERHGHTPGAEPSDALIEDLARHYSFTVYHLTSTCRIGSVVDPELRVLGVDGLRVADASVMPNVVSGNTNAAAIMIGEKAAELVATTHGVGLADFVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5T1</accession>
    <name>A0A0Q8V5T1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SBP_bac_5 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09415</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894584.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52646">
        <property type="protein sequence ID" value="KRC52646"/>
        <property type="gene ID" value="ASE19_09415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="162819at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359730" description="SBP_bac_5 domain-containing protein" evidence="1">
        <location>
            <begin position="29"/>
            <end position="539"/>
        </location>
    </feature>
    <feature type="domain" description="SBP_bac_5" evidence="2">
        <location>
            <begin position="111"/>
            <end position="459"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="539" mass="57197" checksum="5BD4463D16D047AD" modified="2016-01-20" version="1">MRNRIARPVRVATALLATTLLVAGCAGNDGGSSDTLDASSLTKEEIYAAGVVGATGDEGTAKDGGTLTLADYSEARSLDPTKTIPNGAAGGNALAAVYDVLMRYDQPSNAFEPWLAKSLTTEDSTTWTLELRPGVTFSDGTPLDAKAVVGSIGYYMQNAGYNTLLLATNIKAMVPQGDDKVVFTLNRPWITFPNMLASGPGMIMAPAAYAKGPEKFTPIGAGPFALDSYKPAEELLLKANADYWNGKPHLDSVRFVWLGSDADRLSSLTDGSVDVANIRAPQTLEKARTDGFAGIMAPSGLGSLYWLNNREGRAASDVRVRQAINYAIDPEVVAERVNGGAGLPGRNIYSPSAPYFSDVDTADHDLEKAKSLLAEARADGYDGTLTYIGQSDQASQTQAVTVQAMLEAAGFTVKTDLLRNIADQTNRIYVTHDYDIAVSAMSVPDEDPYSRLATNLNSQSPQNPSGYANPEMDALIAKLQAASGDEATDLLKQINELWQQTVPGVAMGAGAFFMPWNKDVHGVTSTSETLLLLGGAWKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6X9</accession>
    <name>A0A0Q8V6X9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Iron ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_16900</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893896.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50368">
        <property type="protein sequence ID" value="KRC50368"/>
        <property type="gene ID" value="ASE19_16900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1752365at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="263" mass="28635" checksum="C1FF1A0C44F3E5FA" modified="2016-01-20" version="1">MSAVLELAEVTVRRGQATLLDRVSWVVREGERWILLGSNGAGKTTLMQVAAAQMFPTTGAVGVLGELIGTVDVFELRPRIGVSSAATAERIPRQEKVRDLVLSASYAVLGRWREEYDEVDHTRADALLREVGVMHLADRTFGTLSEGERKRVQIARALMTDPELLLLDEPAAGLDLGGREDLVSTLSVLAYDPKSPATVLVSHHVEEIPPGFTHVLMLRAGAVVAQGPIGSTLTAETLSATFGMPLQLEEHDGRFSARRQRRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V716</accession>
    <name>A0A0Q8V716_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11095</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894876.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52943">
        <property type="protein sequence ID" value="KRC52943"/>
        <property type="gene ID" value="ASE19_11095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1853194at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021214">
        <property type="entry name" value="DUF2568"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10823">
        <property type="entry name" value="DUF2568"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="117" mass="12597" checksum="397D18B0732EB229" modified="2016-01-20" version="1">MSAIFGWSVMALVFVDELLAVAAFGVWGGHHDPQWLLVWLLPLVAMTVWFLFASPKARYGGTVVRPVAKVVVFGLACVALADAGHGDWALALLVFSVVVNGLALLPSIRVLVEEQQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V742</accession>
    <name>A0A0Q8V742_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-ketoacyl-ACP reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11790</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894994.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53064">
        <property type="protein sequence ID" value="KRC53064"/>
        <property type="gene ID" value="ASE19_11790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1294334at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="251" mass="25986" checksum="62EECCED837AAB25" modified="2016-01-20" version="1">MSSRFEGRTAIVTGASRGIGLAIAQRLVDDGARVVITGRKELALAEAVAELGGPDVALGVAGHAGDADHQAEVVERAITTFGSADLLVNNTGINPAYGPLMEMDLDVARKIVDVNCVAAVSWVQQAHRQWMGEHGGAVVNVASVAGRRPAPGIAFYGASKAMLIHLTEELAVELGPDIRVNAVAPAVVKTKFATALYEGREEEVAAAYPLRRLGVPDDIGSVVAFLLSEDAAWMTGQTLVVDGGVLLGGGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V790</accession>
    <name>A0A0Q8V790_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_11770</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894990.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53060">
        <property type="protein sequence ID" value="KRC53060"/>
        <property type="gene ID" value="ASE19_11770"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027383">
        <property type="entry name" value="Znf_put"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13490">
        <property type="entry name" value="zf-HC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="16"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="zf-HC2" evidence="7">
        <location>
            <begin position="180"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="306"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="306"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="327"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF13490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="579" mass="60853" checksum="1811994DD82E1F2A" modified="2016-01-20" version="1">MTAEGVLPAEPDFDQLYRDHVDDARKLATILVGAEQAEELVAESFARVLAQLRAGRGPRDNFRAYLHVTIRNGFRDSLRGPREAPVSDQPWLLDDAQPSAEELVEDLEDNTASLAFATLPETWQKVLWHVEVEGRKPGEVADLLGMRAGAVSSLAHRAREGLRRAYLDQHVVATTAVADCNWTRQRLSQYVRGDLGSRAEEKVADHIGSCEECLAAYLQVERVNRKLAAWIFPVVLLGALPASGKGLAWLVGLSGVAGVGTAGASPGGAGGAGGSSGTSGTAAVAAAAAVAVGVAGLATWVVRAQHTEPTSADTRTSQEPTADDPVEAAPPADPPPDPVVRRPQVKPVAEHVPVVPVEPTNAPARPRPHAPRPVVVEAVAPRARAVAGCGTWGSLDLPSTRGVSYARTAGDGRAGTWTVEATARSGYVLRSGSRRTFTGDLGGFVPCATLTSVTSTAHPHPVWGHWDLVVDAEAQPGADRRLSATFAFDQDVIVGKRDIDGAGWTCHTADGTPVGLKLEIVLGPGASGPLVCDYDYTGTEPPQLTVHAVGIDEGFQKVAPTGTLTLRSDDEVVGSRRFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V792</accession>
    <name>A0A0Q8V792_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16625</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893694.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50225">
        <property type="protein sequence ID" value="KRC50225"/>
        <property type="gene ID" value="ASE19_16625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="761" mass="79507" checksum="5DD0F450C8202500" modified="2016-01-20" version="1">MQQRGDDGFGAVLRALRTDRSLTQEELAERAGLSVKAVSALERGERKRPYPHTVRALAEALGLADGERTALAAAVPRPVRPPAAVVPAYDGRRGGVTAPPTRLIGREAALVEMAERVEAGARLVTLTGPGGVGKTRVAVATLERLAPSYDLAVGVDLAVVRDPREVLPQLAAAIYLPERGAGDATTRLVAALTGRRTLALLDNFEQVLDAAVDVADLLARCPGLVVLVTSRAPLRVRAEHEVGLGPLSSVQAVRLFLERANAAGARLELDDANAPVVEAICRRLDGLPLALELAAAGARLLTPAGLLARLEEHGPPEGPRDLAARQRTMADALDWSLDLVAPSDAEMFAQLGAFSGSFTLDAAAAVAGTNDVLGPLATLVDHSLVARVEPRTDPPRFRLLEPVRQYAGQRLLASGATAAAADRHAAWFHARALAADVALRGPDLRAELDRLDADHANLRSAYLRLLELGRGDDAAELAGSTWLYLALRGHAREGLGWLEGAEGVGSDAVQARRLIGRMGLLFATGDIAGMRAAATAAVPVARRVGDAGIAAEAATLAGHAAVFVGAVDDARALLDDALARAAGADLPWVEAHTLVALGQLALVRGDLDEADRVLDDALEIARDLGNDFTLATCLTRRATVTTLRGDTAGTATLLGESITRALDTRMSWPLSYSLPAMAGVAVRLGQVRAAAVLLAASASLSVADAVDPRFPVSRDLAEQDLAATRSQLGEQAFAAAWQEGRAASAAELAELVDDVTRLARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7B8</accession>
    <name>A0A0Q8V7B8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Nitrite reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_12535</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895121.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53194">
        <property type="protein sequence ID" value="KRC53194"/>
        <property type="gene ID" value="ASE19_12535"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04879">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00926">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="2 4" id="KW-0408">Iron</keyword>
    <keyword evidence="3 4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="5">
        <location>
            <begin position="4"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="687" mass="73224" checksum="C1CF261F65C6D0BD" modified="2016-01-20" version="1">MTESAAVKTHCPYCSLQCGMAISRKGRAGIEIGAWDEFPVNQGAMCRKGWTSGELRGSRERLTQPLVRDCATGELRGASWDEALDLVAAQLTSLQAAHGKDAVAVFGGGGLTNEKSYQLGKFARVALGTSQIDYNGRWCMSSAASAGNQAFGVDRGLPFPLADIEQTDVVVLVGSNLAETMPPAARHLDRLRERGGKVVVIDPRLTSTAERADLFLQPVPGTDLALGLGVLHLLDAQGAIDEEYVAARTTGFDAVRRSVASWWPERVERTTGIATDELRALVDLLAEADRVTVLTARGAEQHAQGTATVLAWINVALALGMPGKAYAGYGCLTGQGNGQGGREHGQKADQLPGYRMIDDPAARAHVASVWGVAPESLPGKGKSAYELLESLGDGGGPKALLVFGSNIVVSAPHATHVTKRLESLDLLVVCDIVMSETAALADVVLPVTQWAEESGTMTNLEGRVILRQRAITPPAGVRSDLDVIAGLAARLDSPIEFSVEPEEIFAELGRASAGGKADYAGITYERIAAEKGVFWPCPTPDHPGTPRMFTETFATPDGRARFLVQEFVGAAEQPDASYPVHLTTGRVLAQYQSGAQTRRIKGLTDEGAFVEMHPMLADRIGAHDGAPVVVRTRRGEMKAPARVVTTIRPDTVFVPFHWVGANRLTNDALDPSSRMPEFKVCAAEVLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7D9</accession>
    <name>A0A0Q8V7D9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cyclic nucleotide-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895069.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53142">
        <property type="protein sequence ID" value="KRC53142"/>
        <property type="gene ID" value="ASE19_12240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1596937at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018488">
        <property type="entry name" value="cNMP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00889">
        <property type="entry name" value="CNMP_BINDING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="1">
        <location>
            <begin position="4"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="123" mass="13481" checksum="6F48D4C8740CEEA9" modified="2016-01-20" version="1">MATFFEHFTPQEIARISATGRRVKLPEGWSPIWEDTPADKAYILLSGTVSVRRDGVEIAQLGPGDIVGEAAIVGQKLRTASIVALTPLDTIHLTDEILRELDAEWPTFHQALVDVAQSRFGDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7F2</accession>
    <name>A0A0Q8V7F2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12755</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CdaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53226">
        <property type="protein sequence ID" value="KRC53226"/>
        <property type="gene ID" value="ASE19_12755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1439158at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041522">
        <property type="entry name" value="CdaR_GGDEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17853">
        <property type="entry name" value="GGDEF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF_2" evidence="3">
        <location>
            <begin position="188"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_30" evidence="2">
        <location>
            <begin position="348"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="420" mass="46420" checksum="B2F52C418487D902" modified="2016-01-20" version="1">MRDVWANRELRNWVAEFVTTESQSEATERWVNQVHGRIVDQVDQVRQDPAVQNVIRDACEAHWRAFLANLGQPVQTFHLVEEARLVPIVAAQHGYPLTVIFDIYTSGEQAVWEFITNAVRERPSDAVDEADALVHFWTRSSTWFDHSVQQSVALFQAEVERIRQGDAARRLEVVRAVLGGTLRDPREASARLGGHPLSAYQTAILLHTRDDAMIADLPQAAQVMTTALGLRQPLVVHPGGRDLWAWISSTGEPDLTLLAECGAWLEDHHILAAVGSSSPGIDGFRSSHSEALAAQRVSLVGNGSGSGPVTYFADVELLTLVGSGEEMRRFVHRTLGRLSATDEQVARLRATLRALLSSGSVDVAAKRLLVHKNTVRYRIERAEELMGRRLSDSPTEIDVALRCYDTYLMSGAAAVEQPEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7V3</accession>
    <name>A0A0Q8V7V3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Polyketide cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13930</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897065.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53438">
        <property type="protein sequence ID" value="KRC53438"/>
        <property type="gene ID" value="ASE19_13930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1719670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="17544" checksum="3C95F03ABD7180BF" modified="2016-01-20" version="1">MTDTYEKLLEDSIEIAAPAAEVWALVTDLPRMAKWSPQVVKSSVKGGEVKLGATFSNLNKQGIKRWPTAGKVVRYTPPAAGAKGDFAFKIRENRTIWSFELEPTADGGTKLTERRETPQGVSNVSLVLTKVVLGGQKGFTDELRQGIRQTLERIKAEAEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7W6</accession>
    <name>A0A0Q8V7W6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Inositol-3-phosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13920</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the myo-inositol 1-phosphate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897067.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53436">
        <property type="protein sequence ID" value="KRC53436"/>
        <property type="gene ID" value="ASE19_13920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="669352at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004512">
        <property type="term" value="F:inositol-3-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006021">
        <property type="term" value="P:inositol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002587">
        <property type="entry name" value="Myo-inos-1-P_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017815">
        <property type="entry name" value="Myo-inos-1-P_Synthase_actino"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013021">
        <property type="entry name" value="Myo-inos-1-P_Synthase_GAPDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01658">
        <property type="entry name" value="Inos-1-P_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015578">
        <property type="entry name" value="Myoinos-ppht_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03450">
        <property type="entry name" value="mycothiol_INO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Inos-1-P_synth" evidence="2">
        <location>
            <begin position="191"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="361" mass="39080" checksum="BFBBC66F07D43810" modified="2016-01-20" version="1">MGSVRVAIAGVGNCATSLIQGVQYYRDADATSTVPGLMHVQFGEYHVRDVEFVAAFDVDDLKVGKDLSEAINASQNNTIKIADVPTLGVEVQRGPTLDGLGKYYRLTIDESSADPVDVVQALKDAQVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPVFIASDPEWAQKFEDAGVPIVGDDIKSQVGATITHRVMAKLFEDRGVALDRTYQLNVGGNMDFKNMLERERLESKKVSKTQAVTSNLNGSLANVGADDRNVHIGPSDYVAWLDDRKWAYVRLEGRAFGDVPLNLEYKLEVWDSPNSAGIIIDAVRAAKIAKDRGIGGPIIPASAYLMKSPPVQIEDTEGRALLEKFIAGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V892</accession>
    <name>A0A0Q8V892_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_14550</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896955.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53548">
        <property type="protein sequence ID" value="KRC53548"/>
        <property type="gene ID" value="ASE19_14550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1926714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043215">
        <property type="term" value="P:daunorubicin transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1900753">
        <property type="term" value="P:doxorubicin transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005894">
        <property type="entry name" value="DrrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025302">
        <property type="entry name" value="DUF4162"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13732">
        <property type="entry name" value="DUF4162"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01188">
        <property type="entry name" value="drrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="6"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="33752" checksum="9AA748E72C47684F" modified="2016-01-20" version="1">MAEPMISATGLVKRYKDVEALAGLDLAVPEGKVLALLGPNGAGKTTAVRCLTTLLKPDAGSARVAGIDVVADPAAAKAKIGLSGQYAAVDEHLTASENLVMIGRLYHLGRSHARTRAQELLERFDLTEFASRPTKTYSGGQRRRLDLACALVAAPPVIVLDEPTTGLDPRSRQLMWDVIRELVADGATLLLTTQYLEEADVLADDIVVIDHGREIAHGTADELKAQTGGQRIEVVLTSAADAEVATRILNEVAVGEVKVAGGGRELAAAAGDEAAGDLLRVLQGFEREAVKVLDVGLRRPTLDDVFLTLTGHESTEADQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8G9</accession>
    <name>A0A0Q8V8G9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lysine transporter LysE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_16710</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893711.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50242">
        <property type="protein sequence ID" value="KRC50242"/>
        <property type="gene ID" value="ASE19_16710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1927576at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006324">
        <property type="entry name" value="LeuE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="37"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="71"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="149"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="21207" checksum="D41198C1F6C1FE52" modified="2016-01-20" version="1">MSTYVSFVAFAALLAMAPGPDTFLTLRATVVGGRTRGLVTAAGITVACAAQGVLAATGLGAVLAAAEPVFLAVRWAGVAYLTWLGFTALRDALRRDGSVWAVGDGPGTVRHRTAFRQGFVCNITNPKVLAFNLAVLPQFVGEGQGLPTLMAYALTLVVIGSFVLVAVVWVASKAAHALSRPSFRRGVDGVTGVVMLGFATALATEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8I8</accession>
    <name>A0A0Q8V8I8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Cyclic nucleotide-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14430</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896975.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53528">
        <property type="protein sequence ID" value="KRC53528"/>
        <property type="gene ID" value="ASE19_14430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="498436at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022324">
        <property type="entry name" value="Bacilysin_exporter_BacE_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018488">
        <property type="entry name" value="cNMP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010290">
        <property type="entry name" value="TM_effector"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05977">
        <property type="entry name" value="MFS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01988">
        <property type="entry name" value="EXPORTERBACE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00888">
        <property type="entry name" value="CNMP_BINDING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00889">
        <property type="entry name" value="CNMP_BINDING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="171"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="223"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="259"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="286"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="312"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="347"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="377"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="2">
        <location>
            <begin position="423"/>
            <end position="525"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="557" mass="57490" checksum="CAD44B6442A2E73B" modified="2016-01-20" version="1">MKGMTAALRHRDFRYLMAAFTISDIGTWAYNVALAIWVIDATDSYGWLAATTVVRFVPALVFSPFAGLLADRFERRGLMMGADATFAVLMALMGTAMALDAPPLVVLAIAGCSSTLGSLYGPAAAALTPHVVPEKDLASANTLRNTVDNLSVVLGPALGALLALTGPPQNAVWINAATFLASFLLLARMHQRAPGGDVTEGGEAGALRQMTAGLRALRDEPGVLVLVGFSVLATGMFGADTVFFVAASDQLLGTGPDGYGYLLAGLGVGGLLAAPLVTRAEALPRLAPVIVGGMALYCLPTLLLLASDEPAVAFAAQVLRGAGTLFVDVLAVTAMQRALPSDVMARVFAIFDSLCLMAILVGSTATGWVLGVADLDVVLWMLGAGGFAISLLGLPWLLAIDRRAAVRRAELAPLLRLLDAVELVEEVPDGGLVQLAGAGELVDVPAGQAVVTQGEAADAFYVIVAGGCAVVSEVDGHRIDAPALAAGDWFGEIGLLEGVARTATVTATEPTRVLRIPGEDFLAVLTAGRPTAAFTEQAGIRLRRTHGVGYTGAALRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8P3</accession>
    <name>A0A0Q8V8P3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Anthranilate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12665</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53660">
        <property type="protein sequence ID" value="KRC53660"/>
        <property type="gene ID" value="ASE19_12665"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044249">
        <property type="term" value="P:cellular biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071704">
        <property type="term" value="P:organic substance metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd01743">
        <property type="entry name" value="GATase1_Anthranilate_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005801">
        <property type="entry name" value="ADC_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019999">
        <property type="entry name" value="Anth_synth_I-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015890">
        <property type="entry name" value="Chorismate_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006221">
        <property type="entry name" value="TrpG/PapA_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11236">
        <property type="entry name" value="PTHR11236"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00425">
        <property type="entry name" value="Chorismate_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56322">
        <property type="entry name" value="SSF56322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chorismate_bind" evidence="2">
        <location>
            <begin position="116"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="domain" description="GATase" evidence="1">
        <location>
            <begin position="444"/>
            <end position="618"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="627" mass="68159" checksum="1A30DB52B9E3CA68" modified="2016-01-20" version="1">MTAVQGHEAWAIIRRSTRAGDRDTVGVLGGTRSIVESIMDIPIETGVPEPGHICDRLVAVPFRQVSERGFEAHDDGTPLVVVDVTTEHEFTVADVVEAIDPVPVEFTDRGGFETDDEDYGKLVEQIISEEIGQGEGANLVIGRNYRAVVADFGPDVALTVFRRLLERERGAYWTFVFWTGDRFLIGASPERHVSVHGGDVRMNPISGTFHLRPPAGETRSTEARMRAFLKDEKEIYELFMVVDEELKMMCDICTEGGQVLGPFLKPMTHLIHTEYLLAGRTSRDVREVLRDTMYAATVTGSPVENACRLIKQYEPEGRGYYASALALFGRDEEGEPVLDSPIVLRTADVSPAGELKVTAGATLVRDSVPAYEVAETHAKAGGILSAFGLVDPAPVPTTDIATLVADEEVLIALNSRNNRLSGFWLADQAGTPVDPRLIGKSAVILDGEDDFVNMLRHMLTRMGVSSSVVRHEDYVDGALDGFDLVIVGPGPGDPRDDADPKMGKLRAAVTWLLANEKPFLAICLGHQALCHTLGIPLAYKDIVFQGTQATVLLGGRPERVGFYNTFVGRVSPELELPDGVTVDADAETGDVNAVAGPHFRGVQFHAESILTEHGFGIVHDLVSDVLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8Q8</accession>
    <name>A0A0Q8V8Q8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">SLT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_14715</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896928.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53574">
        <property type="protein sequence ID" value="KRC53574"/>
        <property type="gene ID" value="ASE19_14715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1666270at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008258">
        <property type="entry name" value="Transglycosylase_SLT_dom_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01464">
        <property type="entry name" value="SLT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359816" description="SLT domain-containing protein" evidence="2">
        <location>
            <begin position="34"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="SLT" evidence="3">
        <location>
            <begin position="111"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="189" mass="20318" checksum="1AC46B19CAE65325" modified="2016-01-20" version="1">MGGRSVLCAAVALVATACGGTTLPESAPSSVNASPTAADPATPVERAPELSRSGARADVPDAQIMAQLARRAERIAKRLPPVQVPVDVDRGSNRALGYQLMIEFGYPREQWGYLDALWQRESGWNHLAENPSSGAYGIPQSLPGTKMAVVGSDWRTNPETQINWGLAYIGARYGTPQKAWAHSEKVGWY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V942</accession>
    <name>A0A0Q8V942_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Na(+)/H(+) antiporter NhaA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Sodium/proton antiporter NhaA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">nhaA</name>
        <name evidence="10" type="ORF">ASE19_12615</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>2 H(+)(out) + Na(+)(in) = 2 H(+)(in) + Na(+)(out)</text>
            <dbReference type="Rhea" id="RHEA:29251"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53659">
        <property type="protein sequence ID" value="KRC53659"/>
        <property type="gene ID" value="ASE19_12615"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015081">
        <property type="term" value="F:sodium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006885">
        <property type="term" value="P:regulation of pH"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01844">
        <property type="entry name" value="NhaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023171">
        <property type="entry name" value="Na/H_antiporter_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004670">
        <property type="entry name" value="NhaA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30341">
        <property type="entry name" value="PTHR30341"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06965">
        <property type="entry name" value="Na_H_antiport_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00773">
        <property type="entry name" value="NhaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0050">Antiport</keyword>
    <keyword evidence="4 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0915">Sodium</keyword>
    <keyword evidence="8" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="66"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="105"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="130"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="158"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="187"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="209"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="232"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="297"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="321"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="366"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="400"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="425"/>
            <end position="444"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="444" mass="46157" checksum="B3264DC288CBFA9E" modified="2016-01-20" version="1">MARYVARPVRDFLRVESAGSLLLLVATVVALLWVNLPVAGWASGYDHFWHTPVSLEVGSWRIEESLQHWVNDGLMTIFFFVVGLEIKDELVHGDLRDPRTAALPIIAAVGGMVVPALLYVALAGSSGEAGAGWGIPMATDIAFAVGVLGVLGRRVPPAARLFLLTLAIVDDIGAILVIALFYTDDLAVGWLVVALALLGVMAVLRAARVWSVPVYVALGVATWFALLESGVHATLAGVAIGLLTPAVALLRPEVATEFAADALRDNDLDADELRRLRFLVGESVPMTERLQARLHPLSSYVVLPVFALANAGVALDDIGSAVTSAVGLGVGVGLVIGKPLGIGLACFLAIRLGIGRMPAGTSWSQLLGVGAVAGIGFTVSLFIAGLSFPGSAGLTDEAKVGILLASVLAAVIGVLVLLLASAQNGTSVDSSPEPEPRPDSTRQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9R6</accession>
    <name>A0A0Q8V9R6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07930</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895428.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53996">
        <property type="protein sequence ID" value="KRC53996"/>
        <property type="gene ID" value="ASE19_07930"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="167" mass="18478" checksum="5C4E5EA3D03BAB50" modified="2016-01-20" version="1">MRRSIDELHAGAHSRDDQVHAEISGRRDVRVWFEPGYVERTSVAELESTVQQVLARLYVDRMRAYWDLQGRVVPDPVAGPPRLMTPRREAVAEGVLGIHAEGEYGGVRLSTVGMQGFVLVLPDGVHHAFDEHGLGVAIGRAASALLDSYFQQVLRLKAQVAREAGDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9S3</accession>
    <name>A0A0Q8V9S3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Adenine DNA glycosylase</fullName>
            <ecNumber evidence="4">3.2.2.31</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">ASE19_07920</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolyzes free adenine bases from 7,8-dihydro-8-oxoguanine:adenine mismatched double-stranded DNA, leaving an apurinic site.</text>
            <dbReference type="EC" id="3.2.2.31"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the Nth/MutY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.31" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895426.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53994">
        <property type="protein sequence ID" value="KRC53994"/>
        <property type="gene ID" value="ASE19_07920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1274533at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000701">
        <property type="term" value="F:purine-specific mismatch base pair DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004036">
        <property type="entry name" value="Endonuclease-III-like_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003651">
        <property type="entry name" value="Endonuclease3_FeS-loop_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004035">
        <property type="entry name" value="Endouclease-III_FeS-bd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000445">
        <property type="entry name" value="HhH_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044298">
        <property type="entry name" value="MIG/MutY"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42944">
        <property type="entry name" value="PTHR42944"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00633">
        <property type="entry name" value="HHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00525">
        <property type="entry name" value="FES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00764">
        <property type="entry name" value="ENDONUCLEASE_III_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01155">
        <property type="entry name" value="ENDONUCLEASE_III_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="12" id="KW-0234">DNA repair</keyword>
    <keyword evidence="13" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-0408">Iron</keyword>
    <keyword evidence="11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ENDO3c" evidence="14">
        <location>
            <begin position="41"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC53994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="292" mass="31545" checksum="6DCFAF1764856798" modified="2016-01-20" version="1">MTTTDDALVEPILDWYDTHQRDLPWRRPEASPWSVLVSEFMLQQTPVVRVLPVHEAWLQRWPTPAALAAESSGEAVRAWGRLGYPRRALRLHAAAVAITQDHGGEVPASYDDLLALPGVGDYTAAAVAAFAYGQRQVVLDTNVRRVLARAVTGVEFPARSVNRAERDLGASLLPEDAPTAATWSVAVMELGALVCTADRPRCDACPVRATCAWQAAGAPAYDGPPRPVQGYAGTDRQCRGRLLAVLRDTPGAVPRARLDAVWDAAEQRERALASLVADGLVVRTGDGRYALP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Y3</accession>
    <name>A0A0Q8V9Y3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">D-inositol-3-phosphate glycosyltransferase</fullName>
            <ecNumber evidence="7">2.4.1.250</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">N-acetylglucosamine-inositol-phosphate N-acetylglucosaminyltransferase</fullName>
            <shortName evidence="7">GlcNAc-Ins-P N-acetylglucosaminyltransferase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mshA</name>
        <name evidence="11" type="ORF">ASE19_14905</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2-deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>1D-myo-inositol 3-phosphate + UDP-N-acetyl-alpha-D-glucosamine = 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphate + H(+) + UDP</text>
            <dbReference type="Rhea" id="RHEA:26188"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:58401"/>
            <dbReference type="ChEBI" id="CHEBI:58892"/>
            <dbReference type="EC" id="2.4.1.250"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the glycosyltransferase group 1 family. MshA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.250" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51472">
        <property type="protein sequence ID" value="KRC51472"/>
        <property type="gene ID" value="ASE19_14905"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008375">
        <property type="term" value="F:acetylglucosaminyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102710">
        <property type="term" value="F:D-inositol-3-phosphate glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010125">
        <property type="term" value="P:mycothiol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01695">
        <property type="entry name" value="MshA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017814">
        <property type="entry name" value="Mycothiol_biosynthesis_MshA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03449">
        <property type="entry name" value="mycothiol_MshA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="10">
        <location>
            <begin position="45"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="9">
        <location>
            <begin position="240"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="UDP-GlcNAc binding" evidence="7">
        <location>
            <begin position="39"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="1D-inositol 3-phosphate binding" evidence="7">
        <location>
            <begin position="44"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>1D-myo-inositol 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58401"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>1D-myo-inositol 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58401"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>1D-myo-inositol 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58401"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>1D-myo-inositol 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58401"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>1D-myo-inositol 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58401"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="256"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="261"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="322"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="331"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="334"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="344"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="352"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC51472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="445" mass="47308" checksum="0B2E3A065B0344FF" modified="2016-01-20" version="1">MSPESVRRTPENVAERGGGMAESIERVAMVSLHTSPLDQPGTGDAGGMNVYVVEVARRLAASGIAVDIFTRATSSTQEQLVEMCDGVTVHHVHAGPFEGLSKDQLPGQLCVFAREVLRAEAAHPAGHFDVVHSHYWLSGQVGALARDRWGVPLVHSMHTMAKVKNEALAAGDTPEPAARVIGEEQVVEAADVLIANTDLEAKQLINLYDAEPARVEVVHPGVDTAVFRPLTAAQRLQARHERDLAEDALVLLFAGRIQPLKAPDVLLRAVAELLVRRPELRPRLVVPVVGGPSGSGLERPAALANLAADLRIDDVVRFVPPVPQHELAGWYAAASLVAVPSYNESFGLVAAEAQASGAPVIAAAVGGLTTVVRDGHSGLLVDSHDPADWARALERVAVDPAYRDRLAAGALVQAEQFSWEATAAQTLAVYGRAHSLMREEAGALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA03</accession>
    <name>A0A0Q8VA03_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CoA-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15575</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893508.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50039">
        <property type="protein sequence ID" value="KRC50039"/>
        <property type="gene ID" value="ASE19_15575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1660857at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008410">
        <property type="term" value="F:CoA-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004165">
        <property type="entry name" value="CoA_trans_fam_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01144">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00882">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="296" mass="32300" checksum="99E2D85F40CB91CA" modified="2016-01-20" version="1">MNKPRDKQMTIDEVVASLEDGMTIGIGGWGPRRKPMALVRAILRSDLKDLTIVSWGGADVGLLARAGKIRRLVYAFVSLDSIPLEPNFQRARQNATIPEVVELDEGMFQTGLKAAAERLPFLPMRAGLGSDVLVNNPWIKTVTSPYDDGAGLEELVAVPALKLDVALVHLNRADVHGNATYLGPDPYFDDLFAMAADRTYLSVEQVVDTAGLTVDTPVQRVLLNRMMVTGVVETPNGAHFTNCVPDYERDERFQKAYAAAAGGTDEDWAAFEERFLSGDEAAYQAAVQAFAEEQGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA42</accession>
    <name>A0A0Q8VA42_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 17">Aspartokinase</fullName>
            <ecNumber evidence="7 17">2.7.2.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">ASE19_08300</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">Root79</strain>
        </source>
    </reference>
    <reference evidence="20 21" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the phosphorylation of the beta-carboxyl group of aspartic acid with ATP to yield 4-phospho-L-aspartate, which is involved in the branched biosynthetic pathway leading to the biosynthesis of amino acids lysine, threonine, isoleucine and methionine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 17">
            <text>ATP + L-aspartate = 4-phospho-L-aspartate + ADP</text>
            <dbReference type="Rhea" id="RHEA:23776"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57535"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.4"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 18">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 1/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 18">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 1/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5 18">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 1/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 17">Belongs to the aspartokinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.4" evidence="7 17"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895488.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54056">
        <property type="protein sequence ID" value="KRC54056"/>
        <property type="gene ID" value="ASE19_08300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1067792at2"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00015"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00461"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00462"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004072">
        <property type="term" value="F:aspartate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04261">
        <property type="entry name" value="AAK_AKii-LysC-BS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041740">
        <property type="entry name" value="AKii-LysC-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005260">
        <property type="entry name" value="Asp_kin_monofn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001341">
        <property type="entry name" value="Asp_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018042">
        <property type="entry name" value="Aspartate_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027795">
        <property type="entry name" value="CASTOR_ACT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13840">
        <property type="entry name" value="ACT_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000726">
        <property type="entry name" value="Asp_kin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00656">
        <property type="entry name" value="asp_kin_monofn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00657">
        <property type="entry name" value="asp_kinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00324">
        <property type="entry name" value="ASPARTOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 18" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="13 16" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="14" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="12 17 20" id="KW-0418">Kinase</keyword>
    <keyword evidence="15" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="11 16" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 17" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACT" evidence="19">
        <location>
            <begin position="270"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="19">
        <location>
            <begin position="352"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <begin position="7"/>
            <end position="10"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00010122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00016273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR000726-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="RuleBase" id="RU003448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="RuleBase" id="RU004249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="KRC54056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="425" mass="44487" checksum="470B61D9BFE3B41B" modified="2016-01-20" version="1">MGIVVQKYGGSSVADAAGVKRVAQRIVNTKKAGHQVVVVVSAMGDTTDELIDLANEVSPLPPARELDMLLTAGERISMAVLAMAIQNLGHEARSFTGSQAGVITDAAHGKAKIIDVTPGRIEAAIGEGAIAIVAGFQGVSQTTKDITTLGRGGSDTTAVALAVALKADVCEIYSDVDGIFTADPRIEPRARKVPRISYEETLEMAAQGAKILHLRCVEYARRYDMPIHVRSSFSEKEGTWVVKAEDVAQENSMEAAIITGVAHDRSQAKITIVGVPDKPGEAASIFRAVADAQINLDMIVQNVSAAATSLTDISFTLPRGEGQTAMTALSRLQESVGFDSLQYDDSVGKVSIVGAGMSSSPGISARFFEALSEAGVNIEMISTSEIRVSVVVAETQVEAAVNAAHAAFDLGSDEIEAVVYGGTGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAG3</accession>
    <name>A0A0Q8VAG3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08655</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54220">
        <property type="protein sequence ID" value="KRC54220"/>
        <property type="gene ID" value="ASE19_08655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1641547at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025495">
        <property type="entry name" value="DUF4386"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14329">
        <property type="entry name" value="DUF4386"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="134"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="159"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="196" mass="21662" checksum="F28A7F367DBF09C1" modified="2016-01-20" version="1">MGPGDQQEVARFFLDDPTRVRAGFLIGSVGVVLMIPQLALISLHLRRMEPTGFPLLAVVQAIAATTTVLINMFPHLIFALAGFRGDRDPSEVVLLCDLAWLLLFCGITPFIVQNVAVGVAILRDPASLMPRWVAYLNFFIAFSFLPDPLAYFFKSGPFAWNGLFVFWLALTTYCVFLLVMSWACRQANKSLEGAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAV8</accession>
    <name>A0A0Q8VAV8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_08170</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54207">
        <property type="protein sequence ID" value="KRC54207"/>
        <property type="gene ID" value="ASE19_08170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="4"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="117"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="229"/>
            <end position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="397" mass="43362" checksum="F50C2500482FE852" modified="2016-01-20" version="1">MKAFLAEEVFSAEEAYARYREEQGAADHTVPPVVEELKVRARERGLWNLFLPSESGLTQLEYATIAELSGWSLEIAPEAINCQAPDTGNMELLHLVGTPEQQARWLQPLLDGEIRSAFAMTEPAVASSDATNIETRIERDGDEYVVNGRKWWITGAADPRCKVLIVMGKTDPTAATHRQQSMIIVPVDTPGVEIKRSYPVFGHQDQHGHCVIEFTDARVPLANLLGEEGGGFAAAQMRLGPGRIHHVMRALGAGERALAMMVARSKSRTAFGGLLAEQSAVREKIAESRIELDQARALCHLAAYTVDAEGNKAARHLIAAAKVAVPRAVLSVIDRAIQLHGAAGISDATPLAALWGWHRAMRIFDGPDEAHLTTLGRAEITRDPLFDLPASLHDQFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBR6</accession>
    <name>A0A0Q8VBR6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_12025</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895035.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53107">
        <property type="protein sequence ID" value="KRC53107"/>
        <property type="gene ID" value="ASE19_12025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="6"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="122"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="230"/>
            <end position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="382" mass="41611" checksum="BB122EE3312E2849" modified="2016-01-20" version="1">MNFDETEDQNALRLAVREVIDKEAPQERVKEWDEAAHYPEEFYGLLASLGYYGLPLPEEYGGGGQGVTGMVIVAEELARRGLEFGAGYGNTIFLGMNILRNGTEAQKAYHLPRAISGAERYSICMTEPEAGSDAASIRTTAREEDGGFVLNGQKLYITGAGLPNTILHVTAITDPGAGRHGGMTMFLIPADTPGIEVRRLRTVGRHLLGTNEVFFDNVRVERDQILGELNGGWDVLHSNLELERALTCAGFIGALSTVFEMTRNYVSERKQFGRPIGAFQAVAHPIADMYCDLEAARLLTYKAASILDAGKPAFTEVTAAKLFGSEALQRATNTGMQLMGGAGFMLEYDMQRYWREARVATVTAGSSQIQRTVLARAVGVAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBY1</accession>
    <name>A0A0Q8VBY1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Esterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13455</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895815.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53353">
        <property type="protein sequence ID" value="KRC53353"/>
        <property type="gene ID" value="ASE19_13455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1361074at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Abhydrolase_3" evidence="1">
        <location>
            <begin position="84"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="320" mass="34447" checksum="E7D4D6DDB4F51FD1" modified="2016-01-20" version="1">MTANPKNIALEPAAQAFVEATSEPPFLYQLPVAEGRAAVDGVQDEPIFKPEIDEEWIEVPGGPTGTVQVRIVKPQGATGVLPVILYVHGAGWVFGDAHTHDRLVRDLAVGVGAAVVFPEYDRAPEFQYPHQLEQEYAVAQWVTQHGSEKGLDGARMAVAGDSVGGNMSAALTLLAKERGDVAFRFQVLFYPVTDAAFDTQSYHDFAEGYFLAREGMKWFWDQYTTDPAQRAEITASPLRATAEQLAGLPAALVITAEADVLRDEGEAYAANLRRAGVDVTATRYLGTVHDFVMVHALHDTAAAKGAITQAVGALRAALAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC68</accession>
    <name>A0A0Q8VC68_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04305</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54710">
        <property type="protein sequence ID" value="KRC54710"/>
        <property type="gene ID" value="ASE19_04305"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="101" mass="10796" checksum="90C6972C8DF5BE6F" modified="2016-01-20" version="1">MGLPAPAVGDLAELLDVHVDQFGGPVALVADRGLLRGADHFSCDRVQLSQVSHAVAAQDPRHRPHSDLRAEYIGTITVFGAGRQHLQFDLIAGLGRHAVRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCQ9</accession>
    <name>A0A0Q8VCQ9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Thioredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_13970</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the thioredoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897060.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53443">
        <property type="protein sequence ID" value="KRC53443"/>
        <property type="gene ID" value="ASE19_13970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1630944at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005746">
        <property type="entry name" value="Thioredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000077">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01068">
        <property type="entry name" value="thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2 4" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="5">
        <location>
            <begin position="1"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="4">
        <location>
            <begin position="33"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR000077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000077-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="110" mass="11921" checksum="4EEDF4A12C281111" modified="2016-01-20" version="1">MADNISAVTDAEFDAQVLKSDKPVLVDFWAEWCGPCRQVAPILDEIAGAHGDKITFYKLNVDENPVTPASYRVTGIPTINVYSGGEVVKTIVGARPKAAILKELDEFINA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCU7</accession>
    <name>A0A0Q8VCU7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54932">
        <property type="protein sequence ID" value="KRC54932"/>
        <property type="gene ID" value="ASE19_05620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2045579at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018750">
        <property type="entry name" value="DUF2306_membrane"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10067">
        <property type="entry name" value="DUF2306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="166"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="199"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="240"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="271"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="303"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="333"/>
            <end position="355"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="380" mass="40146" checksum="FF803ABD5245D439" modified="2016-01-20" version="1">MVGWVAITALAVLYGPMAVEFTWRFFDPGAPGLWDHTFAAVVDHDEAYGPGSIHTVSGGEYADNRLTMLFHTTTGGIAIVLFAVQFSARLRRNLARHRVIGRVAAGLALVGMAGAAVYLLAVGPDRTYDGPAFHVQLWALAFGTATATVLGVAAARRHQLAMHQALMAYAFALLLTAPLLRVGYLVLGNAWPDTTQLETNLAGAAFLSTWAPVGAFLAARAQDRRRRRDPAIPALPGRRLDLSVLVLAAAAAPVLVVRYDEELDGLDRVTTTGLVGLVAALAIAVVNLVGARRAGAEVAAEEWRVASLGLVSTVPTALVVWGLLDLPFATVDAWFATLLTAPAIAVSLGFLLVVWRRRKVRGSQAQVAPAPVLPAAASSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD61</accession>
    <name>A0A0Q8VD61_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06285</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894453.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55044">
        <property type="protein sequence ID" value="KRC55044"/>
        <property type="gene ID" value="ASE19_06285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1570162at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004111">
        <property type="entry name" value="Repressor_TetR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02909">
        <property type="entry name" value="TetR_C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="27"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="240" mass="25407" checksum="A8F809558ABB5504" modified="2016-01-20" version="1">MPRPLIDLLWRDHPDAPAGGRRGPRARVATGDVVATATRLADAHGLAAVTIRTLAAELDVSTMSVYTHVNSRDDLLVLMADAAHATVELPAFGRQGWRSRVRAVADANRALLARHTWLLDVADERTALGPGTIAKYDHELRALTPLDLDAVTQDAALTFVLDFVRASARAAVPTAGAGELAAHWPEWGVRLASYLGGEFGLAQQVGAAAGEAQQGTRDPDFAWRFGLARVLDGLAGLAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD85</accession>
    <name>A0A0Q8VD85_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09120</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894530.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52593">
        <property type="protein sequence ID" value="KRC52593"/>
        <property type="gene ID" value="ASE19_09120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="23685at85009"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012666">
        <property type="entry name" value="CbtA_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09490">
        <property type="entry name" value="CbtA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="219"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="253" mass="25120" checksum="E59437153A2D140D" modified="2016-01-20" version="1">MSAPTLGRTVGDGALAGAVAGGLGAAAMYWLVEPSIRAAIAIEEAGAAHEHGSGTAHEHGSEALVSRPEQVVAGLVTVLVVGVLIGIAFALTHRFLASRLPGRTPAASTMVLAGLGFLTFTVAPAMVVPANPPAVGDPATVDLRTATYLGTIVCAVALAALVTGVARAGSLTPGTRAVAAAVLGVVGAAVLVAVLPHAADPVPANVPADLIWRFRVASLAQIGLMWLALGATCAWLGQPRTTVPTRAAHLVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDA3</accession>
    <name>A0A0Q8VDA3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Catechol 1,2-dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09210</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894547.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52609">
        <property type="protein sequence ID" value="KRC52609"/>
        <property type="gene ID" value="ASE19_09210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1728007at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008198">
        <property type="term" value="F:ferrous iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006725">
        <property type="term" value="P:cellular aromatic compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004183">
        <property type="entry name" value="Xdiol_dOase_suB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02900">
        <property type="entry name" value="LigB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LigB" evidence="2">
        <location>
            <begin position="9"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="289"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="35198" checksum="8EEE2FD4EBDD85A1" modified="2016-01-20" version="1">MGEVVGAGLVAHVPTIVLPEEIRRELNDGPDTTLVSGLQQLRREVFDVLDYDTVVVLDSHWATTVEWVVTGQERRSGLFTSEELPRGMSQRPYDFAGDPELAALIAGKAADHSTWITSIEDDHLPIFYATTNVWEYLGQGLPEKRWISIGVCQTADGEDALRLGRALGAAIAESDRKVLLVASGAMSHTFWPLRRLRDHEASGVEHIFTPEAAAADAERIGWFKQGDHARVLDTMDEFYRFKPEARFQHYLMMMGALGEGDCTAPGRQYGEYENSIGTGQVHLWFDRPEGGFPAPRPTPTDPDYVRQMSGSGADVPAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDC8</accession>
    <name>A0A0Q8VDC8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09725</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894639.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52701">
        <property type="protein sequence ID" value="KRC52701"/>
        <property type="gene ID" value="ASE19_09725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01782">
        <property type="entry name" value="MCEVIRFACTOR"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="39"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="2">
        <location>
            <begin position="118"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="34579" checksum="7242F166331E3199" modified="2016-01-20" version="1">MKPFRERNPVVIGAASIATLVLLLVAALRAQDLPLIGGGDTYYASFDEAGGLKVKDEVRIAGVRVGQVTSMDLDGNSVKVGFKIKTDATFGDQTHADIKVKTILGSMFLALTPAGEGQLAEGDTIPADRTSSPFDVVEAFSGLAETSADIDTDQLASALTTLADLTRNTPEEFRSALSGVSALSKVVASRDEEINSLLKNLNRVSTVLDSRDEDIVALMGDADTLFKALLQRKAQIHRLLESTTTLSQKLTGLIRDSRADLKPALDHLDSVLQVIKKNENNLEDSIKTMAPFYRVFASTLGNGPWFDTYLFNLPPVPGAGGGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDE0</accession>
    <name>A0A0Q8VDE0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alkyldihydroxyacetonephosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14790</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897128.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53699">
        <property type="protein sequence ID" value="KRC53699"/>
        <property type="gene ID" value="ASE19_14790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1188552at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="1">
        <location>
            <begin position="89"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="517" mass="53281" checksum="DD416907A47A57AA" modified="2016-01-20" version="1">MPATRWGDPALASGLPDGVRDLVGLVFPIADTPALADVVVPASRLSAAQVDGLRALLGEENVVTDDEVRRLRTRGKSTPDLLRQRRGDLGDAPDAVVRPGGHDDVVAVLAWAQENRVAVVPFGGGTAVTGGLVADPAGLAGILSLDLGRMRGLLALDPVSSTATLEPGLRGPEAEALLAAHGLMLGHFPQSFEYATIGGFAATRSSGQSSAGYGRFDAMVVALRVATPVGEVRLGASPANASGPDLRELFLGSEGAFGVITEVTVRVRPLPEVKEYEGWRWSSFAAGADAMRALAQSDLLPTVLRLSDENETAINLADPEAIGGEGNPDCLMIVGYEGTPAAVAAKKAAVTAALTALGGAPQGTGPGEAWAHGRFNAPYLRDSLLDNGVLVETLETVTFWSNRENLYARVKAALEAALPGAMVLCHVSHVYATGCSLYFTVAAPGGEDPLAAWLPAKAAACEAIVAAGASITHHHAVGTDHKPYLTAEIGDLGATVLRAVKRAVDPTGILNPGVLVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDK8</accession>
    <name>A0A0Q8VDK8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Malate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_05260</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="3">Divalent metal cations. Prefers magnesium or manganese.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the malic enzymes family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894401.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55140">
        <property type="protein sequence ID" value="KRC55140"/>
        <property type="gene ID" value="ASE19_05260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="654531at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004471">
        <property type="term" value="F:malate dehydrogenase (decarboxylating) (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05311">
        <property type="entry name" value="NAD_bind_2_malic_enz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012301">
        <property type="entry name" value="Malic_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037062">
        <property type="entry name" value="Malic_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012302">
        <property type="entry name" value="Malic_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045213">
        <property type="entry name" value="Malic_NAD-bd_bact_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001891">
        <property type="entry name" value="Malic_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00390">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03949">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000106">
        <property type="entry name" value="ME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01274">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00919">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="malic" evidence="5">
        <location>
            <begin position="81"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="Malic_M" evidence="4">
        <location>
            <begin position="226"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000106-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000106-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM01274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="448" mass="46604" checksum="28C94B68AE96C94B" modified="2016-01-20" version="1">MRLHTTVDHGVVGEVATAIAGAGGMVTAIDVAESSSNRLTVDVTCSAADAEHAAELQTAVAAVEGVEVHKVSDRTFLIHLGGKIEVASKVPLKTRDDMSLAYTPGVGRVSMAIYENPDDVRRLTIKGNTVAVVTDGSAVLGLGNIGPGAALPVMEGKAALFKRFGEIDAWPICLDTQDTDEIVRAVELIAPGFGGINLEDIAAPRCFEIEARLRERLDIPVFHDDQHGTAIVVLAALTNALRVVKKEIGAARVVVSGAGAAGTAIVKLLIAAGVQDVVVVDRAGALVAGDTVLSEAHTELAGLTNRDLRSGGLQDVLVGADVFIGVSAPGVLKPEWISTMAADPVVFALANPDPEVDPAQAAKYAAVVASGRSDFPNQINNVLAFPGVFRGLLDARATEVTVEMCLRAADAIAHVVRDDELNASFIMPSVFHPEVHHAVAAAIAHKPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDQ7</accession>
    <name>A0A0Q8VDQ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acetyl-CoA carboxyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10380</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894746.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52813">
        <property type="protein sequence ID" value="KRC52813"/>
        <property type="gene ID" value="ASE19_10380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="504557at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009317">
        <property type="term" value="C:acetyl-CoA carboxylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034733">
        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000438">
        <property type="entry name" value="Acetyl_CoA_COase_Trfase_b_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011763">
        <property type="entry name" value="COA_CT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011762">
        <property type="entry name" value="COA_CT_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01039">
        <property type="entry name" value="Carboxyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01070">
        <property type="entry name" value="ACCCTRFRASEB"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50989">
        <property type="entry name" value="COA_CT_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50980">
        <property type="entry name" value="COA_CT_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CoA carboxyltransferase N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="CoA carboxyltransferase C-terminal" evidence="2">
        <location>
            <begin position="241"/>
            <end position="475"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="475" mass="49464" checksum="9788AF5526468045" modified="2016-01-20" version="1">MSTPRRWTARELIDLVLDDGSYESWDRPVDISGHAEAYQAELRAAAERAGTDESVLTGRGTVRGRPVAFVVNEFGFLAGSIGIAAANRIAAAVRRATVEGLPVLASTSSGGTRMQEGTRAFVQMVEISRALMEHRAAGLPYLVHLRHPTTGGVYASWGSLGHVTVAEPGALVGFLGPKVYEALNGRPFPEGVQLAENLAAKGVIDAVVPAEELPALVDHALGVLVAPASAGSLERRTPVVPGTTLDHPVWEDIEATRAPGRVGVRDLLRYGASSTLRLKGTDEGERDDSVLIALTRLDGQPCVLVGQDRSRQTPATPMGPGALREARRAMELASELGMPLVTVVDTPGAELSQAAEEGAMAGEIARCIAGLVTMTVPTVSVILGQGCGGGALALLPARTVLATERAWLSPLPPEGASVIVHGDPSRAAQMAAEQKVGALDLLASGDVHGVVPEVEGDTPETLARAVVAEIAARLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEB2</accession>
    <name>A0A0Q8VEB2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carbon monoxide dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10935</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894845.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52913">
        <property type="protein sequence ID" value="KRC52913"/>
        <property type="gene ID" value="ASE19_10935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1719670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05018">
        <property type="entry name" value="CoxG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010419">
        <property type="entry name" value="CO_DH_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38588">
        <property type="entry name" value="PTHR38588"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06240">
        <property type="entry name" value="COXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="182"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="207" mass="20660" checksum="7C2A499FFCECCF69" modified="2016-01-20" version="1">MKISGENAIAAPVAQVWEAILDPRVLVATIPGCEQLEATGTNAYAMTVSAGVAAIRGTYSGSCVLEDLREGEGLTMRLKGAGAPGTIDATVLVTFKDDGGRTVLSYDADAVVGGMIGGVGQRMLTSVSRRMAAEFFGNVEGVIAHGLPVAAPVEASVSAEGTPVYSAAPKSSRGAAVGGDSFLAGVVVGGGLVLAGVVVGAVLGRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEC7</accession>
    <name>A0A0Q8VEC7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TGc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11020</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894861.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52929">
        <property type="protein sequence ID" value="KRC52929"/>
        <property type="gene ID" value="ASE19_11020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="670657at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013589">
        <property type="entry name" value="Bac_transglu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002931">
        <property type="entry name" value="Transglutaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08379">
        <property type="entry name" value="Bact_transglu_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01841">
        <property type="entry name" value="Transglut_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00460">
        <property type="entry name" value="TGc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TGc" evidence="1">
        <location>
            <begin position="176"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="31632" checksum="846B931946D36792" modified="2016-01-20" version="1">MTRYRVEHRTTYTYDDDVTDSYGIGHLVPRSLPWQQVTGYDVRVDPEPGDLSRDADYYGNTVTYFQVTSPHSQLVVVGSGEVDVVPPAVDEEAAARPWESVRPLLSPAAPGAWRATDFALPSAAVPVHGGARDYAADSLTPGRPVGEAVTDLVHRIHADFDYDATATTVTSTVSEILAKRAGVCQDFAHFTLSALRAHGLAARYVSGYLATEPPPGKERVVGADASHAWVAVWLGDDEWLALDPTNDQWQNDRYVTLAWGRDYGDVPPLKGVIFTEAKKSQLAVSVDVAPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEN3</accession>
    <name>A0A0Q8VEN3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thiolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895032.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53104">
        <property type="protein sequence ID" value="KRC53104"/>
        <property type="gene ID" value="ASE19_12010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="311458at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thiolase_C" evidence="1">
        <location>
            <begin position="255"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="378" mass="39008" checksum="8E903F749C899447" modified="2016-01-20" version="1">MARITDLRPVHVAGIGLHPYQYPTETSYIELGLHAVREALADAGVPWPSVEAAFVGTARLGMAAGVPMLRYLGMTGLRVSQVENASATGSTAFRQAVAEVASGLADVAIAIGVDKALGKIAAAGTGITPISPAADIPFARYALLTERYLAEAGYTREQIAMVAVKNHGNGALNPYAQRRKKRTLEEVLAAPAVAGPLNGLQITPQGEGAAAVIVMSEDAIQRYGVARDRTVRVAASATTSDQAFDGQNADVALTVSATNAAYEEWGGDPKDLDIVEVHDAFAIEELLFVEAMGLCPPGAGAGELAAGSFNIGGRTAVSPSGGLLAMGHPLGPTGLGQIAEITRQLRGEAGDRQHPGAKTGLAHMVGIGPVCVVHILER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF34</accession>
    <name>A0A0Q8VF34_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12695</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895679.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53216">
        <property type="protein sequence ID" value="KRC53216"/>
        <property type="gene ID" value="ASE19_12695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1963935at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="126" mass="14142" checksum="B54C688267A9ABFD" modified="2016-01-20" version="1">MTWNETHERTRIIREVEAAAAADMSGALPWREEWSQYFATPAVLVEALRARWNHMCEAQLDTRANEDEVRAAYTRLRRTHAGVLAIIAQADAGVELTARLVAPIPTAVSHARRRLFQFHGGPVLPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGS1</accession>
    <name>A0A0Q8VGS1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Tryptophan synthase alpha chain</fullName>
            <ecNumber evidence="7">4.2.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">trpA</name>
        <name evidence="9" type="ORF">ASE19_02155</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + L-serine = D-glyceraldehyde 3-phosphate + H2O + L-tryptophan</text>
            <dbReference type="Rhea" id="RHEA:10532"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.2.1.20"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Tetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7 8">Belongs to the TrpA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.20" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892671.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56654">
        <property type="protein sequence ID" value="KRC56654"/>
        <property type="gene ID" value="ASE19_02155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="912786at2"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004834">
        <property type="term" value="F:tryptophan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04724">
        <property type="entry name" value="Tryptophan_synthase_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00131">
        <property type="entry name" value="Trp_synth_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018204">
        <property type="entry name" value="Trp_synthase_alpha_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002028">
        <property type="entry name" value="Trp_synthase_suA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43406">
        <property type="entry name" value="PTHR43406"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00290">
        <property type="entry name" value="Trp_syntA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00262">
        <property type="entry name" value="trpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00167">
        <property type="entry name" value="TRP_SYNTHASE_ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0456">Lyase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="274" mass="27528" checksum="37F8E52ACB6B5AAC" modified="2016-01-20" version="1">MTGTRTAFEKARAEDRAALVGYLPAGFPDVDGSIAALKAMVAAGCDVIEIGLPYSDPVMDGPIIQAAAQQALEAGVRTTDVLRTVEAVAATGVPTLVMTYWNPIERYGVERFAQDLANAGGAGLITPDLTPDFAPEWVAAADARDLDKVFLVAPSSTDERIALTTAASRGFVYATGIMGVTGTKQATAAGVAPLIARTKALSPNGGADLPVGVGVGVSTGAQAADLAAYADGVIVGSAFVRTLLDNAGDRAAGLAALAALTEELAAGVAGAVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGU4</accession>
    <name>A0A0Q8VGU4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 13 14">UDP-N-acetylmuramoylalanine--D-glutamate ligase</fullName>
            <ecNumber evidence="5 13 14">6.3.2.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">D-glutamic acid-adding enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13 17" type="primary">murD</name>
        <name evidence="17" type="ORF">ASE19_02375</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <reference evidence="17 18" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13 14">Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13 14">
            <text>ATP + D-glutamate + UDP-N-acetyl-alpha-D-muramoyl-L-alanine = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</text>
            <dbReference type="Rhea" id="RHEA:16429"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29986"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83898"/>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 13 14">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 13 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 13">Belongs to the MurCDEF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.9" evidence="5 13 14"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892711.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56693">
        <property type="protein sequence ID" value="KRC56693"/>
        <property type="gene ID" value="ASE19_02375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1093223at2"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004326">
        <property type="term" value="F:tetrahydrofolylpolyglutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008764">
        <property type="term" value="F:UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00639">
        <property type="entry name" value="MurD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018109">
        <property type="entry name" value="Folylpolyglutamate_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005762">
        <property type="entry name" value="MurD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01087">
        <property type="entry name" value="murD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01011">
        <property type="entry name" value="FOLYLPOLYGLU_SYNT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11 13 14" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8 13 14" id="KW-0132">Cell division</keyword>
    <keyword evidence="9 13 14" id="KW-0133">Cell shape</keyword>
    <keyword evidence="12 13 14" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="13 17" id="KW-0436">Ligase</keyword>
    <keyword evidence="13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10 13 14" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase_M" evidence="16">
        <location>
            <begin position="130"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="15">
        <location>
            <begin position="340"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="132"/>
            <end position="138"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00015655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00639"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KRC56693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="492" mass="51885" checksum="84EB205756B9DB69" modified="2016-01-20" version="1">MRHPDPTTLGRRDSWEGVRVVVAGFGTSGAAAVDNLLHLGADVRAVAESVSPKILERAELLEVLGARIDVHEGATALLPDDADLLVVSPGFRPDAPIIVAARERGVPVWGEVELAWRLRDPEHPAPWLCITGTNGKTTTVQMLDSILRAAGLRSVAAGNVGLPLTEAVMDPEPYDVIAVELSSFQLHYTDSMAAESAAVLNVAEDHLDWYDGPTAMDDYARDKGRIYTGVERACVYNVADPATERLVRDAEVVEGARAIGFTTGVPGVGMLGVVDDILVDRAFIEERSSSAAELCTLEDLASRAPHFVANALAAAALARAHGVSQAAVRDGLRAFQPDGHRIAVVAEHAGLTWVDDSKATNPHAAASSLAAFAPVVWVAGGLAKGAGFDDLVRQVGDRLRAVVLIGRDRDVIRQALSRHAPDVPVIDVDSAETGEVVDDDRMARVVAAAAEVAQAGDTVLLAPGCASMDQFSDYAARGDAFAEAVREYIGAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH36</accession>
    <name>A0A0Q8VH36_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_12980</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895728.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53266">
        <property type="protein sequence ID" value="KRC53266"/>
        <property type="gene ID" value="ASE19_12980"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014325">
        <property type="entry name" value="RNA_pol_sigma-E_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02983">
        <property type="entry name" value="SigE-fam_strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="17"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="101"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="165" mass="18689" checksum="14649AEFE60099C1" modified="2016-01-20" version="1">MEARADFDAFVGARSSALLRTAYLLTRDHPLAEDLLQTALAKAWFAWRRIDGEPEAYVRRILVNTYATWWRRRWNGEHATDELPEPAPTGDVHAHSDASHDLWSALGRLPRKQRAVVVLRYFEDLTEAETARVLGCSVGNVKSQASRALAKLRIDPALTIEEDPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH53</accession>
    <name>A0A0Q8VH53_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895744.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53282">
        <property type="protein sequence ID" value="KRC53282"/>
        <property type="gene ID" value="ASE19_13065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1188727at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038766">
        <property type="entry name" value="Membrane_comp_ABC_pdt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30287">
        <property type="entry name" value="PTHR30287"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="286"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="334"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="379"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="426"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="450"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="502"/>
            <end position="523"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="762"/>
            <end position="784"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="808"/>
            <end position="833"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="853"/>
            <end position="875"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="886" mass="90930" checksum="D4C817A0418BF882" modified="2016-01-20" version="1">MSGTTRGGWRVALRLARREALRRKGQTVLMLVLICLPVLAVTAAAIVWRTQDVTSVEGLDRQLGSADALVEGTGTPTVVQDFEGGNYLTPGSGSEETPYRMQSAKDVRKAIGDRPMVPYLRSSLSFDAAKGRGDTDVVETDLASPLSDGLFERVEGQYPPGPGEVVVNQALADRGPGIGDELVVHRTTAEGEQDATVRVVGIVESTESRGYELAAGPPGTFGIAEESPARWLVGGGPVSWDDVKALNAAGLVATSRQVVTDPPPDSELPPELVVDDGGTDAVTLTALGTVVAMVLLEVVLLAGPAFAVRAKAQAHTLALVAASGGTPRQARRTVLASGVVVGTVGGLLGVALGIAGGAVAVPIAQHFNGTRFGPFEVPWLLLLPIAFFGFLSAVLAAVVPAFSASRQDVVSVLAGRRGEGSPSRRSPVLGVVLLAIGIGSAAYGSRPGGAAPLLVAGSAIISVLGMILFVPVAVSLTARLAGRLPLPLRFAARDAARHRTRTVPAVAAVGATVAGVVALGISLSSQEADNLRHYSPQLADGYGSVALGGSPAPDLAAIDAVIARSLPGDQVEEIRGLQSNSPTGGYDVGFSQRGKPLELSYWSSIGSPYAVGTVVPDYIAMTDDERARADAVLADGGVVLLHDPDSEDSAGIRATELDGDRVTVELTEWTNGTEVPTTRGSATVPAVLAPVTRTSPAMAVLSPPLLAKINGTETTTGLLLHAPISRAEQKDMEEGLAALPAAPYLYVERGYQTDPAVKVIQYVLAALGGILMLGGTLTATFLALSDARPDLATMAAVGARPRTRRSVAASYAAVVGLVGALLGAPVGFIPGIAVSRPLTQDFSSGTSALDIPWLLIAAVVIGLPVLTALVVGACARGRLPLTARID</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHF5</accession>
    <name>A0A0Q8VHF5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07060</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895272.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53840">
        <property type="protein sequence ID" value="KRC53840"/>
        <property type="gene ID" value="ASE19_07060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1999021at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045592">
        <property type="entry name" value="DUF6461"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20062">
        <property type="entry name" value="DUF6461"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="203" mass="21388" checksum="97FDBD5872BC3003" modified="2016-01-20" version="1">MSAATDYYTDLLESAFDLESISILVAAGATQAEVAAALEIDVTAPVAEFPDAEAEDGSAYALVDVAGGVLAVELSGYADPSRAALRELSSGGRSAAVVRSNIQAHLRFGCARDGELLFDDHEYMYVDDPEPVPAELKELFLEAWDDLEAEEPEPTSDGFAVALAMAEVVTGIRLTAADLAAVQEAGFRPAPSLRYVEGLSAEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHG7</accession>
    <name>A0A0Q8VHG7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltransf_25 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895273.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53841">
        <property type="protein sequence ID" value="KRC53841"/>
        <property type="gene ID" value="ASE19_07065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1664438at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="47"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="21902" checksum="AA80C533662AED5F" modified="2016-01-20" version="1">MSERVAAQHAAVAAHYDARASTYDDSAMHRALADVVADAVGEPGGLVVDVATGTGLVLRAIAARHPQTELVGVDLSQAMLARARGELPQARLVRAEATALPVRANAAAVVTCVTALHLLPDPEAAFLDWCRALRPQDGRLVTATFTAAGASARPDLPQGFERRHDAYRTPEQVQAAAEGFLLDSHTTWRHDGTGDELLICVLRRTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHH0</accession>
    <name>A0A0Q8VHH0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03895</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892971.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56954">
        <property type="protein sequence ID" value="KRC56954"/>
        <property type="gene ID" value="ASE19_03895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2194088at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="142" mass="15020" checksum="3F3E0BFC0B7CC51D" modified="2016-01-20" version="1">MTPAEPGLFGRVAGAVTGKVVDAVPIEVVLDHVDVNDLLERVDVNQLLERVDVNRLLDRVDVDRLLARADVEQLVQRAGIPDIVADTTGNLAGRTLDAARAQVVGLDTVVGGIVDRLLRRTGPAPLGPELLVGPAQRAGEGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHQ1</accession>
    <name>A0A0Q8VHQ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03325</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892869.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56852">
        <property type="protein sequence ID" value="KRC56852"/>
        <property type="gene ID" value="ASE19_03325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="129110at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="617"/>
            <end position="650"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="754" mass="81737" checksum="037B7E7C662F1AB3" modified="2016-01-20" version="1">MSAYEVERRGRLVVLPPWDGGETVGFSSWKQAERRLRDFAGGHLSRGSRAAVRVQVALVHRADNTYNANAVAVVVPGVAGSLDDRHLGYLHDHYLRQVGPRNLPALIAHAGGEVVCHAVIESDATVRLDLPHGRELGDAIRVFLDLPDRPTGTRAAQREGPAAQTANALALLATFDRPQGSPAGIRITMGHDHVSDGHLLELRDSATGADVGAVVGGVLHVIDERDREQVRRLVAEQDVPVRGPLAPPPPDPSSPWGPGTVPNAVVERRREGLLLKAREPDPYALGEAFAIFHPDSDVLWVEDGPLVDVAVLVLARHGLAAGEVRLPRQPWGLDDELEYLAHEHVPAATDPQFVLHQRFARGRRELFAVHELSGAVEPCRLCGAAALALTTPICVDQIAYCAACLEQAYDGRGSSLGATARAVRSLVRSEFDGELFLSGQLHPLHVNPADPVDGAFVDRALRLRSSIDRSHPWTHVLEATGLANEGLRTGRGTLIRARDGHLCHSLRERAVCDFLHLHGIAHDREPVYPVDPDYNPSGLRRADWVLGDGTLVELWGLPDDPAYAAKMAQKQALARRHGLRLVELVEGDLRQLPSIFARWTPPGAPTGWTWSPRLLTPGADVAPEPPKVPRVRATPPREPIPDDGRGSNAFNDAQRDERLERCRRAVELQQAGRTRPQIAAELGVGVDTVKGLLRDGKFFADPATDPVRRSAAEQAHEAQGAGATRAEFRAAHALTAARAAEAWKDARAIFGAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHW4</accession>
    <name>A0A0Q8VHW4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_07790</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895400.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53969">
        <property type="protein sequence ID" value="KRC53969"/>
        <property type="gene ID" value="ASE19_07790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="498436at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="45"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="81"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="225"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="255"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="288"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="312"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="352"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="377"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="12"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="423" mass="44282" checksum="5A361D84E0991D0E" modified="2016-01-20" version="1">MPSYRTLARNRDFTALWVGATVSELGSRVTTFAMPLVAYAMTGSALWAAAAEGIFLLGMVAMLLPAGVLADRRHRLRLMRLSLGSGVLLYGSLVAAGLMGALTLPHLLGVALATGVTTGLFQPAEYSAIRTVVPADDLPTALSQQQARQHVASLVGGPLGGALYGVARWAPFAADAVTYALGWLLLGRVRADLSPAPASPVEAGRPLRDLGEGLRFLWARPFLRVMLIWSPAANLAINALFFTALLRLVEAGFPAWQIGLVETAIGACGILGALVAPWLIDRFATGRLTIVIAWSFVPLSVPLALWNHPLAMALAASAGLFLNPAGNAGVGSYRLAITPPELVGRMQSTMQFAAMATMPLAPALAGGLLAVLSGRDAVLALTALTAVVALIPTLSRSVRSVPRPVAWPRLAEPLPERSPVAAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI81</accession>
    <name>A0A0Q8VI81_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">mRNA interferase</fullName>
            <ecNumber evidence="1">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03965</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Toxic component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PemK/MazF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892983.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56966">
        <property type="protein sequence ID" value="KRC56966"/>
        <property type="gene ID" value="ASE19_03965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1754531at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003477">
        <property type="entry name" value="PemK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011067">
        <property type="entry name" value="Plasmid_toxin/cell-grow_inhib"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33988">
        <property type="entry name" value="PTHR33988"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02452">
        <property type="entry name" value="PemK_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033490">
        <property type="entry name" value="MazF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR033490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="116" mass="12487" checksum="BE3EDB3D370E4453" modified="2016-01-20" version="1">MRRGEIWLADLEPVVGSEANKTRPCVLVSNDHANGRAAVLSRGTVTVVPVTRTLAPLLSFHVLLPAEDTGLSDDSKAQAEQVRSVDVRRLVHHAGAVPAGLMRELDAALRLHLDLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIB2</accession>
    <name>A0A0Q8VIB2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_04140</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893015.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56998">
        <property type="protein sequence ID" value="KRC56998"/>
        <property type="gene ID" value="ASE19_04140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="13"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="150"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="224" mass="23663" checksum="A8533BE0142CC73B" modified="2016-01-20" version="1">MTARPTCAVDVMRIVVVDDHLMFAQLLAITLDDQPDMECVGIAGDVETAFGMVSALQPDLVLMDARLQDGDGVAATAELVATHPGLRVAVLSGYIDTALMRRAAEAGACALHPKDGDLREILNAVRTARAGTFVVQPQLLRSLVAHSREAKPLHPPLTEREHAVLQFLAAGLDASVIAQELGISVNTCRGHVKNLLTKLGAHSQLEAVVFALRTGLVGVSDVGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VID0</accession>
    <name>A0A0Q8VID0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08435</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895512.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54080">
        <property type="protein sequence ID" value="KRC54080"/>
        <property type="gene ID" value="ASE19_08435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1999616at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036689">
        <property type="entry name" value="ESAT-6-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010310">
        <property type="entry name" value="T7SS_ESAT-6-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06013">
        <property type="entry name" value="WXG100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140453">
        <property type="entry name" value="SSF140453"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="106" mass="11647" checksum="02CB7D847019B903" modified="2016-01-20" version="1">MSNVEFGHAEGALKQIAERVIQAKEEFKKHSDTLDGQIGNMRGKWDGDGGRAFAILHQAWTEKHKVVSTALDKFHAALTETEKDNVAVDQQAGAGMNNLFNKLGQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ44</accession>
    <name>A0A0Q8VJ44_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Antibiotic ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_12330</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895086.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53159">
        <property type="protein sequence ID" value="KRC53159"/>
        <property type="gene ID" value="ASE19_12330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1112046at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="11"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="356"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="43"/>
            <end position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="390"/>
            <end position="397"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="544" mass="58183" checksum="3D7B9F9F70D30747" modified="2016-01-20" version="1">MAAQTPSLAPIVVRDLTVAFGRRTVLDGIDLVAQPGRRIGLIGENGAGKSTLLRAIDGILPSTAQLGGAIDVPPDRAFLTQEPPFADSASVSEVLATTLAPLRAAVAQVEELADRLDDPDVARRYAAALDHALTHDAWDADRRALLAAEQLGLDGLDPDRRVGSLSGGQRTRLALATLMTRRPTCLLLDEPTNHLDDDAIALLVAFLRDLPGVVLLTSHDRVFLDEVCTDLVDLDPVGMGTDGRGGRRYGGGWTAYAAERAAARRRWEATYAEQQDELARLREATRVEKSAIAPGRGPRDNDKFIHAFKGQNVDRALARRKKDAERRLAEAEEVQVRKPPAPLRLSAALTGDGPGAGSGRVVDVRDLEVVGRLRLPVLCVDAGSHLLVTGANGSGKSTLLGVLSGRVAATAGDVSVRARRVVELTQDPVFPDLTATAAATYAALVGDELAERRPLRSLGLLHPREHAKPVVLLSVGQRRRLALAVAVATAPDLLLLDEPTNHLSLTLVTELEEAIGESVGTVVVATHDRWLRRRWDGAAVELSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJN5</accession>
    <name>A0A0Q8VJN5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Biotin_lipoyl_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23675</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893964.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57758">
        <property type="protein sequence ID" value="KRC57758"/>
        <property type="gene ID" value="ASE19_23675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1815805at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039562">
        <property type="entry name" value="MFP_biotin_lipoyl_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13533">
        <property type="entry name" value="Biotin_lipoyl_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin_lipoyl_2" evidence="2">
        <location>
            <begin position="77"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="120"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="181"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="356"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="185"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="370"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="402" mass="40925" checksum="470C549FC250C784" modified="2016-01-20" version="1">MRELLHRVRPPWRRPRRLVLVLSALVVTSGVAGGWLLLRGDEPAAAAATTATVSTQTLEQTVTATGTVAAQTTEDLSFDVSGTVTRVYVEPGDTVKKGQRLARVDDDVLQAELDAARSALDAAETAQSQDVSDGASDEQLAADEASVLAAESSLTEAQDAVDDAVLRSTIAGTVTDVGIEIGDSAGSGSSGQPSAGSTSTSGDTTTGTITVVSTGHFVVDATVSSSDVEKVEKGLQAQITVSGIDDTVYGTVAEVGLVAETDSTGAAAFPVTIAVTGERDDLFAGTSADLAIVISRRTDVLTVDSRALRTDGDTTYVEKVTDSTTGATERVDVETGEASGMVTEVTSGLAEGDVVQVPGFSGPGGSGGDEEMQQFQQQMQERMQNGGGFPGGGQGGFPGGGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMX8</accession>
    <name>A0A0Q8VMX8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">SSD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_22615</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892621.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58862">
        <property type="protein sequence ID" value="KRC58862"/>
        <property type="gene ID" value="ASE19_22615"/>
    </dbReference>
    <dbReference type="OrthoDB" id="149255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="17"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="217"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="258"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="292"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="346"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="503"/>
            <end position="523"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="530"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="564"/>
            <end position="583"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="604"/>
            <end position="631"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="637"/>
            <end position="660"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="7">
        <location>
            <begin position="166"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC58862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="702" mass="73174" checksum="8187A6600A23DD9D" modified="2016-01-20" version="1">MSNLLHRLGRSAATRPWVAIGAWVVLATVVIASSAAFGRELEESFDAPGLDSYQAAEMLADAQSDEGGVTAHVVLEAPDAATQVAPVEAALEELPHVLSTTSTVSTDGTIALVRVQYPAVGQIDASDLDHLKDAVADLHDEQSVTLEAGGDLFFAFEEAPTGLGEVAGMVVAMVVLLIAFGSFVAMGLPIGMALFGLVIGITSMKLVTYLIDIPAWAPELAAMVGLGVGIDYALFMVTRHRENLALGMPVAEAAGRALATAGQAVIFAGGTVVVAILGLLVAGIPFVTGGGVAISAMVLVMVLASVTLLPALLGLAGHRINGRRRTPYQASNGWTRWGAHVTRHATAYLVGAAVLMVGLAAPVLALNLGFPDDGTKPESRTERRAYDLIAEGFGPGANGPLVIAVDVSRNESVLAPLAAAVAADPGITSVSDPTVDLAAGVATLVAQPTTSPQDEETQQTVARLRSEVFPAVLDGSDATAHVGGQTATFADLGDRVQERMPRFVVAVLLLSFLLLTVLFRSVLVPLKAVVMNLLSVGAAYGVLVMVFQWGWAASLIGVESTVPIVSFIPLFLFAILFGLSMDYEVFLLSRVREEYRRHGDNTRAVIAGIAGTGRTITAAALIMVAVFSGFVLGSDPVVKMMGVGLATAIFLDATVVRLMLVPATMKLLGDANWWLPGWLDRLLPEVDAEPVEVAMAQAPQAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN73</accession>
    <name>A0A0Q8VN73_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22780</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892592.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58892">
        <property type="protein sequence ID" value="KRC58892"/>
        <property type="gene ID" value="ASE19_22780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1905807at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021443">
        <property type="entry name" value="DUF3093"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11292">
        <property type="entry name" value="DUF3093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="18"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="161" mass="17656" checksum="D10FAB17300998D0" modified="2016-01-20" version="1">MTSSATAYSERLRVPLRWWAQGTMFIATVWLALVIPLHEQPWIAHAATGALLALMTLFHRTYGGARLVVADGWLLAGRARIEVTHLGTAEALDADDTNRVSGRDADVRAYLLLRPYVKRSVRVPINDPADPAPYWLLSSRHPKAFASAINTAIDAARGTNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNB9</accession>
    <name>A0A0Q8VNB9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">4-amino-4-deoxy-L-arabinose transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23235</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC59002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893033.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59002">
        <property type="protein sequence ID" value="KRC59002"/>
        <property type="gene ID" value="ASE19_23235"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006083">
        <property type="entry name" value="PRK/URK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00485">
        <property type="entry name" value="PRK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PRK" evidence="2">
        <location>
            <begin position="65"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="172" mass="18608" checksum="C568F8AE598816F3" modified="2016-01-20" version="1">MLSLALSRPPTLGAGRLICIDGLAGSGKTTLARSLATLAPEAVVLGTDEMLEGWRGLPGLGASVEALLRPLAAGAPGSYRRWDWYADRWAESVTVEPAPLLVVEGVGSAASSYRDLVTILVWVEADRDVRLARWLERDGEDQRPHWADWLADEEALHLREGTRARADVVVAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNH7</accession>
    <name>A0A0Q8VNH7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ion channel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23035</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893039.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58996">
        <property type="protein sequence ID" value="KRC58996"/>
        <property type="gene ID" value="ASE19_23035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1991946at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013099">
        <property type="entry name" value="K_chnl_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07885">
        <property type="entry name" value="Ion_trans_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="118"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="196"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="Ion_trans_2" evidence="2">
        <location>
            <begin position="137"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="217" mass="23350" checksum="3A71F692332DD5D7" modified="2016-01-20" version="1">MRAIGSHPSAVLLGAQLVLVLAYPALQESTVGRAFAGVAQMVVVLSAVWAVRRTEVLTWVALLLGAPAVVLAVAEAVQPEVGWVVVVSAAFHVPFYFFVSYALIRYLFHDEKVTRDELFATGAAFTVVAWGFAYLYAAAQVVWPGSFVGWSSPDGSADLPWFELLYLSFTTLTSVGLSDVYPVLAHARSLVMIEQVAGVFYVALVVARLVGLTARRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPU9</accession>
    <name>A0A0Q8VPU9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Rieske-type oxygenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_00020</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896872.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59470">
        <property type="protein sequence ID" value="KRC59470"/>
        <property type="gene ID" value="ASE19_00020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="691776at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008203">
        <property type="term" value="P:cholesterol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045605">
        <property type="entry name" value="KshA-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19298">
        <property type="entry name" value="KshA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0753">Steroid metabolism</keyword>
    <feature type="domain" description="Rieske" evidence="8">
        <location>
            <begin position="23"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00030944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="377" mass="43187" checksum="A371E8287C44729D" modified="2016-01-20" version="1">MTSNDQVRRIEVDAGPRRFARGWHCLGLARDLADGKPHQINAFGQKLVVFSGEDGQLNVLDAYCRHMGGDLSQGEVKGNEIACPFHDWRWGGDGRCKQIPYARRVPLRARTAAWPTMVQDGMVFVWNDPEGNPPPADVTIPRIPQVEDDRWTDWIWYETVIEGANCREIVDNVVDMAHFFYIHYSFPTYFKNVFEGTSAYQYMNGDGREDVRPPRPSKSNPAVLGTTSVAAYHGPSFMIDEVTYHYEDLDVDTILINCHYPVDENSFVLQYGIIVEKKDGISDEEADLMATKTGAFIKYGFEQDVAIWKNKARIDNPLLCEEDGPVYQLRRWYQQFYVDAADVSAEMTDRFEFEIDTTRPNEAWRAEVEQNLAARRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQB0</accession>
    <name>A0A0Q8VQB0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_01275</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896656.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59685">
        <property type="protein sequence ID" value="KRC59685"/>
        <property type="gene ID" value="ASE19_01275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1857862at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007624">
        <property type="entry name" value="RNA_pol_sigma70_r3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04539">
        <property type="entry name" value="Sigma70_r3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="56"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r3" evidence="5">
        <location>
            <begin position="132"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4" evidence="7">
        <location>
            <begin position="217"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="274" mass="30161" checksum="19AF14A33C6768C6" modified="2016-01-20" version="1">MSIAVAVPTIPTSYAEQPLPSDQRKARTAELLAEARQVEGPERDALLEQAIVINIPVARSLAARYRNRGQSQDELEQVACLALTRAVQAFDPERGDDLLVFAVPTILGELKRHFRSASWAVRPPRRVQEIRPRLTAAEAELTQALGRPPTVRELAEEVDAPFEEVEEALACGDLAHASSLDEPVSETGSSLGELLPTEDLGFEHSEAVVLLGPACRQLKERDRKILRMRFYDQMTQQQIADELGVTQVQVSRLLQRIFTDLRRAVAGSSAAPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQX1</accession>
    <name>A0A0Q8VQX1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_02820</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892786.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56768">
        <property type="protein sequence ID" value="KRC56768"/>
        <property type="gene ID" value="ASE19_02820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2001120at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="70" mass="7883" checksum="9D236B4A171FEBA1" modified="2016-01-20" version="1">MTPYEEIAAPRDLHADCEAVSRRLEHAAVKATRPAPSIHFDEFPRDAGKREIRISEAAQRLANALHLHLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRA5</accession>
    <name>A0A0Q8VRA5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00590</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59803">
        <property type="protein sequence ID" value="KRC59803"/>
        <property type="gene ID" value="ASE19_00590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1966598at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="219" mass="24660" checksum="772CEAED7259B326" modified="2016-01-20" version="1">MGGSAERPARFFADTDEFDAWLAAHHDTETELWMGIHKKHVPDGGLTWAEAVPVALCWGWIDSIAQRIDEDAVRQRWSPRKRTSNWSKVNLELVEQLRAAGRMQPSGLAIWEQRRKEQAPYTHEVDGELVLPEPYASQLAASPAATAYWEAATRTYRRVCTNWVLSAKQQSTRDRRMTQLVEESAAGELIPSQRYGEIPRWTERAAAAARAAQDASGST</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VS32</accession>
    <name>A0A0Q8VS32_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03415</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892884.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56866">
        <property type="protein sequence ID" value="KRC56866"/>
        <property type="gene ID" value="ASE19_03415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="891360at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="352" mass="37103" checksum="A6E0E69B6FEA4AA1" modified="2016-01-20" version="1">MPTAVQSLTTAARNAWAISPLGPGVEQYDGLPATVLSDEPHRRLTRYDREAPATAPRPVLLVPPLAVSARCFDLRPGQSLAAHLVGTGRATYLVDYGAIGFADRAMGFETWVDDILPTAIHAVLDDHAEAGDRADGVDLVGWSLGGTMSLLTAAAHPDLPIASLTAFGTPIDYSRIPAVQPLIAADRLLGSRVATAPTAALGGVPRHLVRASYRAMAPRRELTKAYHLAKNILDTETLARTTAIDGFIAEMPGYPGRAYHQIHTRLMARNELASGTVHLGRGREVRLADVRTKVLFVGSETDNIADGPAVRAGADVVPGATYAAADGLSHLGLVAGPRAAALSWPLMDAFLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTA7</accession>
    <name>A0A0Q8VTA7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23955</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894012.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57378">
        <property type="protein sequence ID" value="KRC57378"/>
        <property type="gene ID" value="ASE19_23955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2081421at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="78" mass="9183" checksum="DD98BE753C4DCBC4" modified="2016-01-20" version="1">MEIHASARRHDIADDDIRHAWDHALRLVEFEYDGEDRLLVIGPDRHGNLLELVCVPVDEPLRIIHADRLRAKLHDYLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVB4</accession>
    <name>A0A0Q8VVB4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896893.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59811">
        <property type="protein sequence ID" value="KRC59811"/>
        <property type="gene ID" value="ASE19_00735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601982at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021391">
        <property type="entry name" value="DUF3027"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11228">
        <property type="entry name" value="DUF3027"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="244"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="28344" checksum="9825043290EB2974" modified="2016-01-20" version="1">MGNAVPVSTLERKLTDAATADAVDAARAALLDEVDAADVGEHLGHQVDGLRVVTHLFECRRKGYVGWQWAVTLTRASRQRKVTVVEVVLLPGQDAIVAPAWVPYRERLLPGDMSPGDLLPVSDEDPRLVPTYSFGDDPLDTDDKAQVRQVAKDLGLGRVRVLSPEGRDAAAERWYDGEAGPDAPIAKSAPDHCYSCGFLVRLAGPLSELFGVCANGDANDDGRVVAFQHGCGGHSEVRLTKRQQPLAPAPPVLDTVGVDDLDRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVE5</accession>
    <name>A0A0Q8VVE5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00375</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59529">
        <property type="protein sequence ID" value="KRC59529"/>
        <property type="gene ID" value="ASE19_00375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2095680at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="145" mass="14989" checksum="E9852789475DF63C" modified="2016-01-20" version="1">MGAMNSEYADPSASAATDALGMGDNGERRSRIRTVLDVDQTINKLDATADRLNQTLDTFGALLVDFTAALHDFNASVAGFNGTVGEFHTVVDKADGLLGRADRLLAPLAATQQVGDQLKVASQLASQVASAAVKKGVAAAKSARV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWV6</accession>
    <name>A0A0Q8VWV6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_23545</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893941.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57735">
        <property type="protein sequence ID" value="KRC57735"/>
        <property type="gene ID" value="ASE19_23545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1721927at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="8"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="235"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="235"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC57735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="274" mass="29103" checksum="9059776235191A6C" modified="2016-01-20" version="1">MTGVEPAVAVRNGTVALGGRPILRGIDATVLPGEFVALMGANGSGKSTLVRAMVGLRPLVSGEVRLHGTPLASYDDWQRVGFVPQRATAAAGVPASVWEVVAAGRLTRRRLLRPLSRADRAAIDDALEVVGLADRRRDAVSTLSGGQQQRVLIARALAGEPDLFFLDEPTAGVDLPNQQVLADTLSQLKQRGATIVLVAHELGPLARLVDRALVMRDGRIVYDGAPLRDHEVHQPWLGEPHTHHHHHSSGPTDHVPGVVAPVDAPADRIGGEGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXP2</accession>
    <name>A0A0Q8VXP2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">S-(Hydroxymethyl)mycothiol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_00300</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896823.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59517">
        <property type="protein sequence ID" value="KRC59517"/>
        <property type="gene ID" value="ASE19_00300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1859760at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017816">
        <property type="entry name" value="MycoS_dep_FDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03451">
        <property type="entry name" value="mycoS_dep_FDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="ADH_N" evidence="4">
        <location>
            <begin position="28"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="ADH_zinc_N" evidence="3">
        <location>
            <begin position="193"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="370" mass="38291" checksum="8F6D5FE022D452FF" modified="2016-01-20" version="1">MQQVRAVIARSKGAPVEIATINVPDPGPGEAVVKVLTCGVCHTDLHYREGGINDDFPFLLGHEASGIVESVGPDVTDVAPGDFVILNWRAVCGECRACKRGDLHYCFATHNAKQRMTLADGPDAGTELSPALGIGAFAEKTLVAAGQCTKVDPAARPAAVGLLGCGVMAGIGAAINTGQVTRGRSIAVIGCGGVGVAAIAGAALAGASPIIAVDIDAKKLEKARAMGATHTVDSSAVDPVEEIKRICAGTYAGAEGADVVVEAVGRPETWKQAFYARDLAGTVVLVGVPTPDMVVPDIPLIDVFGRGGALKSSWYGDCLPSRDFPMLVDLYQQGRLDLDAFVTEEIGIGDIEAAFERMHHGDVLRSVVVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYL7</accession>
    <name>A0A0Q8VYL7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">TMP-TENI domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00605</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP).</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896772.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59568">
        <property type="protein sequence ID" value="KRC59568"/>
        <property type="gene ID" value="ASE19_00605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1558094at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00564">
        <property type="entry name" value="TMP_TenI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036206">
        <property type="entry name" value="ThiamineP_synth_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022998">
        <property type="entry name" value="ThiamineP_synth_TenI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02581">
        <property type="entry name" value="TMP-TENI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51391">
        <property type="entry name" value="SSF51391"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TMP-TENI" evidence="2">
        <location>
            <begin position="90"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="18477" checksum="9CB9331CC1B74743" modified="2016-01-20" version="1">MTLARLLVLTDRHQVPSGRTLADVLAAVADGGATSVLLRESDLPDDERAALAAVAHGRGLSVIAAHRPVPGGAGVHVRATDPTPAGGRWGRSCHDRVEVDQAAREGAAWVTLSPFAPTASKPGHGPPLAASAYAGLPVPTYALGGIGPANAAAARAAGAHGVAVMGAVMRAPDPAVVVAALLEVVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYS9</accession>
    <name>A0A0Q8VYS9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">LysM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01000</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896709.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59632">
        <property type="protein sequence ID" value="KRC59632"/>
        <property type="gene ID" value="ASE19_01000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2063919at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00118">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018392">
        <property type="entry name" value="LysM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036779">
        <property type="entry name" value="LysM_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01476">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00257">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54106">
        <property type="entry name" value="SSF54106"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51782">
        <property type="entry name" value="LYSM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="domain" description="LysM" evidence="2">
        <location>
            <begin position="72"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="127" mass="13092" checksum="541A3F8AADEA59F4" modified="2016-01-20" version="1">MSTISIAPHRVAAPRPVRVAAQPRRQAGPVRLTRRGRLVVFLFALAVVVTAAVWLASGSAATREEGAGGSIDVVTVAPGETLWQIASDVAAPTGGDVRGAIADIQDLNTLDGSTLYAGQQLRVPAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZL4</accession>
    <name>A0A0Q8VZL4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Cytochrome BD ubiquinol oxidase subunit I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_00260</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cell inner membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the cytochrome ubiquinol oxidase subunit 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896910.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59794">
        <property type="protein sequence ID" value="KRC59794"/>
        <property type="gene ID" value="ASE19_00260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070069">
        <property type="term" value="C:cytochrome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019646">
        <property type="term" value="P:aerobic electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002585">
        <property type="entry name" value="Cyt-d_ubiquinol_oxidase_su_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30365">
        <property type="entry name" value="PTHR30365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01654">
        <property type="entry name" value="Cyt_bd_oxida_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006446">
        <property type="entry name" value="Cyt_quinol_oxidase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 12" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 12" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5 12" id="KW-0349">Heme</keyword>
    <keyword evidence="10 12" id="KW-0408">Iron</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="69"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="104"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="138"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="193"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="226"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="328"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="362"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="411"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRNR" id="PIRNR006446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC59794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="464" mass="50502" checksum="7825E2514256B223" modified="2016-01-20" version="1">MSAHVLALATAEPAGLLPAREQMALSLGWHIVLACFGVAFPAMIFVMHLRGIRRNDPVALGLAQRWAKVSAVLFAIGAVSGTVLSFEMGVLWPGLMGTYGDVLGLPFAFEGLAFFLEAIFLGIYLYGWNRMPPKRHVLMVLPMAVTGIIGAYCVLAVNAWMNVPTGFRLVDGEVTDVEPWKVLFNGHAFLQFAHMWVGAYMLTGFSVAGVYAVGMLRGRRDAHHRLGFMVPFVFASIAAVTQPFVGHVLGFGLDERQPAKLAAFELAETTESPSPLRLGGILVDGEVKYSIDIPRLGSLIAMNSPDKPVPGLDTIPEEDHPPVNMTHLAFQTMVGIGTLLAGAVVLFWFLRRRGRDLLEKRWFLRFAAIAGPLAVVALEAGWIATEVGRQPWIVYDVMRTTDAVGDYTASLWWLLGTSVVVYTAMTVGAVVVLRSMARRWRDGAVDLPSPYAPATATTAGEDHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMI2</accession>
    <name>A0A0Q8UMI2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20260</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46197">
        <property type="protein sequence ID" value="KRC46197"/>
        <property type="gene ID" value="ASE19_20260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1930370at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043814">
        <property type="term" value="F:phospholactate guanylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002835">
        <property type="entry name" value="CofC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40392">
        <property type="entry name" value="PTHR40392"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01983">
        <property type="entry name" value="CofC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03552">
        <property type="entry name" value="F420_cofC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="207" mass="20279" checksum="AB53022F8B9F24F9" modified="2016-01-20" version="1">MVVRPGSFAVLLPVKSPGTGKSRLSTLPDAERRRLAAAFAADAVAACLASPLVGLVVVVSDDAQFAASLVREGVVPAADPGAGLNAALRAGAALAHDLRADLQPAALLADVPALTAPDLDVALRHAQEAGGAWYVADADATGTTLYTAPYDGFDPRFGAGSAAAHAATGAAAVPGELATLRRDVDDAAGLAAAVALGVGPATTAALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMT9</accession>
    <name>A0A0Q8UMT9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Nucleoside triphosphate pyrophosphatase</fullName>
            <ecNumber evidence="2">3.6.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Nucleotide pyrophosphatase</fullName>
            <shortName evidence="2">Nucleotide PPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20950</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + H2O = a 2'-deoxyribonucleoside 5'-phosphate + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:44644"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:65317"/>
            <dbReference type="EC" id="3.6.1.9"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a ribonucleoside 5'-triphosphate + H2O = a ribonucleoside 5'-phosphate + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23996"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58043"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="EC" id="3.6.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Maf family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.9" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896081.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46310">
        <property type="protein sequence ID" value="KRC46310"/>
        <property type="gene ID" value="ASE19_20950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1469203at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036218">
        <property type="term" value="F:dTTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035529">
        <property type="term" value="F:NADH pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00555">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00528">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029001">
        <property type="entry name" value="ITPase-like_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003697">
        <property type="entry name" value="Maf-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43213">
        <property type="entry name" value="PTHR43213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02545">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006305">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52972">
        <property type="entry name" value="SSF52972"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00172">
        <property type="entry name" value="maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="199" mass="20573" checksum="8BDCADC49E2903AB" modified="2016-01-20" version="1">MPQLVLASASPARLATLRSAGFDPQVVVSGVDESQVTGVPPAELALRLAELKCAAVADGGEVPADALVLGCDSVLELDGEALGKPDDADEAVRRWEAMRGRSGVLHSGHCLRDVAAGRQAAATASTRVHFADVTDEEIAAYVATGEPLHVAGAFTVDGLGGGFVTGIEGDHHNVVGVSLPLLRGLVRELGHSWTDLWAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN15</accession>
    <name>A0A0Q8UN15_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21215</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896127.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46356">
        <property type="protein sequence ID" value="KRC46356"/>
        <property type="gene ID" value="ASE19_21215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1271038at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359237" evidence="2">
        <location>
            <begin position="23"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="286" mass="29925" checksum="DAE300F37703007E" modified="2016-01-20" version="1">MTRRTTAALACLALAAGLTACSSDEPSGPERISITPVKDGATSGLNPLGDGTRATVAGYTMDAVRLPGATATGEVSFRILDRSGTPLTDYTPEQTKLLHLYVVRDDLAQFRHVHPELGSDGTWRGRVDLGVPGRWRVVAEFIPEGAERPVVLGTTLRVAGAWKPEPVPEGDAAGTSDDGVVQVGLLGAGEVGTNGRLRVAITSTDGEPLALGSYLGATAHLTGFAVGTRGFVHVHPLGAPEVTDDGTVLTFHTTFEQPGPYRMFVQVRVDGMLHQVAVTATVNSHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN92</accession>
    <name>A0A0Q8UN92_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Helicase ATP-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20640</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896026.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46255">
        <property type="protein sequence ID" value="KRC46255"/>
        <property type="gene ID" value="ASE19_20640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="458022at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="30"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="495"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="495"/>
            <end position="511"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="590" mass="63822" checksum="8AECE2D482180A8B" modified="2016-01-20" version="1">MTSLGPAWPERAAWGTAPSLRAWQSAALQDYLSRNPRDFLAVATPGAGKTTFALTVAAELLGRRVVDRLVIVAPTEHLKMQWAEAAARAGIPVDPTYSAGAGKIASDYVGVAVTYAGVGVNPLAMRIRTERFRTLVILDEVHHAGDSLSWGEGVREAFEPAARRLALTGTPFRSDINPIPFVTYAPGEEGVPTSVADYTYGYAEALADHVVRPVLFLAYSGQMSWRTRAGDEVAASLGEPLTKDMTSQALRTALDPSGSWIPSVLQAADKRLSEVRRHVPDAGGLVIATDQDSARAYAKLLKQITGESVTVVLSDEKAASKKISAFAADDSRWMVAVRMVSEGVDVPRLAVGVWATTTSTPLFFAQAVGRFVRARTRGEIASVFLPSVPNLLTFAAELEAQRDHVLKRKVNTDGDIFAAENDLLAEANAGDAASDDLDALPFEALGSEARFDHALYDGAQFGHEGEVHVGSEEEMDFLGIPGLLEPDQMRSLLRQRQEDRRRTRSKAPESESARPADTLADVTTHEHLAVLRRELNGLVASWNHRTGQAHGITHAALRKECGGPAAAVANAEQLQKRIDRIREWSVRKTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNS3</accession>
    <name>A0A0Q8UNS3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pilus assembly protein CpaF</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21505</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46634">
        <property type="protein sequence ID" value="KRC46634"/>
        <property type="gene ID" value="ASE19_21505"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="2">
        <location>
            <begin position="70"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="406" mass="44122" checksum="689B9DB3AED727F6" modified="2016-01-20" version="1">MVARLDEDLRAAVRRDGIDPQHEVPAVRRLATGLVRAHDERSLTGVVAPVADADALVAELVARVAGFGPLQPYLDDPTVEELWINSPDRVFIARQGRHELTNLVLTEAQVTELVERMLKSTGRRIDLSRPFVDAMLPAGHRLHVVLQGISRGFSAVNIRKFVVRATRLSELVELGTLTAPAAHFLEASVRAGLNILVTGGTQAGKTTMLNCLAAAIPGGERVISAEEVFEIRFAHPDWVALQTRQEGLEGTGEIRLRDLVKESLRMRPSRIIVGEVRSEECLDLLLALNAGLPGMCTLHANSAREALTKACTLPLLAGENISARFVVPTVAASVDLVVHLALDPSGARRVVEIVAVPGRMEGDVIETEPVFEWRDGRLERGIGLPPRLEHFHRTGTDVVRLLNGAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8URN8</accession>
    <name>A0A0Q8URN8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896132.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46361">
        <property type="protein sequence ID" value="KRC46361"/>
        <property type="gene ID" value="ASE19_21240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1580479at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359353" evidence="1">
        <location>
            <begin position="39"/>
            <end position="693"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="693" mass="72633" checksum="09250B2A8C92117C" modified="2016-01-20" version="1">MDNKFTLLSRQRCRWAAGTTLAVVAAGSPLMVANAAYAAGTGIVNVHVTAGTGAPLSGQSVTLYSTATGSPVQTAHTTDGSGDTSFTGLDAGGYTAKVAASASFREEYTPVVVIDGDGDVEYASASLLAVGITQGRLTGTVAKPGNRLDAEVRIFPSTATNASIASGEVGPVAYAGAYDYDYDYNDVAEDDWSTKLPAGSYKVLVGDDRSGDTVCHGDFYDGYCDGWEEHTQQVWVGSGASNDADHAGVVTVTAGQSTGTAKVTFPGTVTPTAPTRVGGTVTGAGGATLADVRVRLFQQQEDLSWNQITSDWTGSDGTFSFSTIYDYATETETPLPAGVYTVSFDDSRDEYGDEFYDDKATDYPYSPPEGVTTLTLGATGSQTANAALAQVALDKSSGLNGKVTDDIGVGHAGEISVYDTYGNRVLDWSTRRDGTWSIPATQLAPGSYKVRAYDDVDISSWLGSTAYSLATTFKVPVKGTATTGNSNLKRWGSIGGTLSFAATAGTDTSESWITLYDADGERVDSTEATSNGSYTFGHQRPGTYYVGATGWRYSSFDESDLQVSRVEYIKQFWKAKFTLATATPIAVGSGGKVTGVNIALGRTLKAIALPSIVKPSSVVVGTILKSKVGTWNVRTGVTYKYEWRRGTVVVGRASSYKTVKADKGKTLTLRVIASDSSGRFLTGNATSAGVKVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUH6</accession>
    <name>A0A0Q8UUH6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18125</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893238.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48837">
        <property type="protein sequence ID" value="KRC48837"/>
        <property type="gene ID" value="ASE19_18125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1719670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="140" mass="14542" checksum="BA7FA8F6AB642F01" modified="2016-01-20" version="1">MRATSSTTVAAPVSTVWAVLAEHEGMASWGPGMKVVMTAEGSPDRNGVGAVRSISAPGPAPAIVEEITRFDVDHALGYKALSGVPFKNYRGEVVLTAEGAGTRITWTLEADSRVPVAEAVALKGVVTTLLTLLVRAVKKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV07</accession>
    <name>A0A0Q8UV07_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">4-hydroxybenzoyl-CoA thioesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895951.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46176">
        <property type="protein sequence ID" value="KRC46176"/>
        <property type="gene ID" value="ASE19_20140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1989068at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="34"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="152" mass="16773" checksum="19754A72539051E9" modified="2016-01-20" version="1">MSDPATSADRTRPTRSSYRAWRTATTRWSDDDVYGHLNNARYFDLIDTAVNAHLHDATGSDIRDLPAIGVVAEVTCRYFAEMGYPRPIEMGLAVERLGTSSVVYRVGLFQGDGDEACAEGRFVHVYVDNTDPSRPVTPIPDVIREAVAPLVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV41</accession>
    <name>A0A0Q8UV41_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Polysaccharide biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_18265</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Nucleus membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893264.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48863">
        <property type="protein sequence ID" value="KRC48863"/>
        <property type="gene ID" value="ASE19_18265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1764636at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006488">
        <property type="term" value="P:dolichol-linked oligosaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013969">
        <property type="entry name" value="Oligosacch_biosynth_Alg14"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08660">
        <property type="entry name" value="Alg14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC48863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="17332" checksum="39E909B4E0F63ED1" modified="2016-01-20" version="1">MRLLLVSSSGGHLAQLMCLRPWWEKHDRHWVTFDTEDAVAKLDGEDVTWAHHPTTRNARNLLRNTIQARGVLARTDPHVIVSTGAALAVPYFWLRSRRRSVTVYLEVYDRIETRTLTARLCRPTTDLFLVQWQEQQHLYRSSVVLGGLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV56</accession>
    <name>A0A0Q8UV56_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 6">Dihydrofolate reductase</fullName>
            <ecNumber evidence="3 6">1.5.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_18615</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>(6S)-5,6,7,8-tetrahydrofolate + NADP(+) = 7,8-dihydrofolate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:15009"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57451"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 6">Cofactor biosynthesis; tetrahydrofolate biosynthesis; 5,6,7,8-tetrahydrofolate from 7,8-dihydrofolate: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6 7">Belongs to the dihydrofolate reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.3" evidence="3 6"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49116">
        <property type="protein sequence ID" value="KRC49116"/>
        <property type="gene ID" value="ASE19_18615"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00077">
        <property type="reaction ID" value="UER00158"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004146">
        <property type="term" value="F:dihydrofolate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006545">
        <property type="term" value="P:glycine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00209">
        <property type="entry name" value="DHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012259">
        <property type="entry name" value="DHFR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017925">
        <property type="entry name" value="DHFR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001796">
        <property type="entry name" value="DHFR_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48069">
        <property type="entry name" value="PTHR48069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00186">
        <property type="entry name" value="DHFR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000194">
        <property type="entry name" value="DHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="SSF53597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00075">
        <property type="entry name" value="DHFR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51330">
        <property type="entry name" value="DHFR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0521">NADP</keyword>
    <keyword evidence="6" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="5 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DHFR" evidence="8">
        <location>
            <begin position="7"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR000194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC49116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="175" mass="19108" checksum="43D4761596D92813" modified="2016-01-20" version="1">MTPNGRRVTMVAAVAENGVIGADADIPWKISEDFAHFKATTMGHVLVLGRTTHEGIGRPLPGRTTVVLTRDPSYAAEGVQVAHSVTHALELADTILRDQPDDRQVMIGGGAAVYAAALPYADEQVISEIPMAPEGDTHYPEFSRKRWTEVRREPREGFTIVWWERVFACGGSPDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV89</accession>
    <name>A0A0Q8UV89_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">GTP pyrophosphokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_19125</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">In eubacteria ppGpp (guanosine 3'-diphosphate 5'-diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + GTP = AMP + guanosine 3'-diphosphate 5'-triphosphate</text>
            <dbReference type="Rhea" id="RHEA:22088"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:142410"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.6.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Purine metabolism; ppGpp biosynthesis; ppGpp from GTP: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the relA/spoT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893857.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49126">
        <property type="protein sequence ID" value="KRC49126"/>
        <property type="gene ID" value="ASE19_19125"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00908">
        <property type="reaction ID" value="UER00884"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015970">
        <property type="term" value="P:guanosine tetraphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05399">
        <property type="entry name" value="NT_Rel-Spo_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01668">
        <property type="entry name" value="TGS_RSH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004811">
        <property type="entry name" value="RelA/Spo_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045600">
        <property type="entry name" value="RelA/SpoT_AH_RIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007685">
        <property type="entry name" value="RelA_SpoT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004095">
        <property type="entry name" value="TGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012676">
        <property type="entry name" value="TGS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033655">
        <property type="entry name" value="TGS_RelA/SpoT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13291">
        <property type="entry name" value="ACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19296">
        <property type="entry name" value="DUF5913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04607">
        <property type="entry name" value="RelA_SpoT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02824">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00954">
        <property type="entry name" value="RelA_SpoT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81271">
        <property type="entry name" value="SSF81271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00691">
        <property type="entry name" value="spoT_relA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51880">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HD" evidence="5">
        <location>
            <begin position="60"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="TGS" evidence="6">
        <location>
            <begin position="401"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="4">
        <location>
            <begin position="669"/>
            <end position="743"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC49126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="743" mass="82990" checksum="B310FA01D7974E6F" modified="2016-01-20" version="1">MRARLARMGNRSQASHPVLEPLFRAVRANHPKADLALIERAYVTAERLHADQKRKSGDPYITHPLAVTTILAGIGMTEPTLVAALLHDTVEDTPYTLEECRRDFGDEVALLVDGVTKLDKVVYGESANAETIRKMIVAMSRDIRVLVIKLADRLHNMRTLRFVKQSTQERKARETLDIYAPLAHRLGMNTIKWELEDLAFSALHPKIYDEIVRMVAERAPSRDSFLAEVISQVEKDLREAKIKATVTGRPKHYYSIYQKMIVGGRDFSDIYDLVGIRILVEEDRDCYGVLGVLHSRWNPVLGRFKDYVAMPKFNMYQSLHTSVIGPQGKPVEMQIRTFAMHRRAEYGVAAHWKYKEDGRAGNDTDQRGDLDDMSWVRQLLDWQSEVEDPGEFLESLRFEMNQTETYVFTPRGDVIALPSGSTPVDFAYAVHTEVGNRTIGARVNGRLVPLESTLENGDVVEVFTSKAEGAGPSRDWLNFAKSQRARSKIRQWFTKERREEAIERGKDEIARLMRKEGLPLKRLLSHDSLTLAAGAFRLTDVSALYAAVGEGNLGAQTVVRKVIELHGGDQGAQEDLAEAVTITGRRGRSHRPTGGDAGVIVTGSPDVWVKLAKCCTPVPPDTILGFVTKGGGVSVHRKDCTNAASLLAQPEKLVDVEWAPTGQSTFLVNIQVEALDRSRLLSDITMMLSDAHVNILSANLTTSRDRVAKSRFTFEMADAKHLDTVLNAVRSVPGVFDAYRVTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVD8</accession>
    <name>A0A0Q8UVD8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_20830</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LytR/CpsA/Psr (LCP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46288">
        <property type="protein sequence ID" value="KRC46288"/>
        <property type="gene ID" value="ASE19_20830"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004474">
        <property type="entry name" value="LytR_CpsA_psr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03816">
        <property type="entry name" value="LytR_cpsA_psr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00350">
        <property type="entry name" value="lytR_cpsA_psr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="51"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="88"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="120"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="LytR_cpsA_psr" evidence="4">
        <location>
            <begin position="183"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="428"/>
            <end position="458"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="470" mass="51060" checksum="E4919D7C9ED16764" modified="2016-01-20" version="1">MPGADRIAVAERAARVRFRRALTLMGFTLVVPGSAQLIAGNRDVGRVAVRIWLLTLGVLAYLGIRLAIDPYYAVDLSLSPTFMLVLRLYLIAGAIGWAGLFVDAWRIGQPLSLRLQHRRAIVGVNGILCFSIAGTMLFGAHLAGAQRHLLLQFVDGELGASHDGRYNVLLLGGDSGADRWGLRPDSMTVASIDAKTGKTVMIGLPRNMQNFKFREGSVMDKQFPQGFDCDGCYLNGVSTWAGDHTDLFDSDHPGIEATVMAIEGITGLKMNYWAMVNMKGFRRLVDAFGGVTLNVRDRIPVGGLGDDVTGYIEPGKRKLNGREALWFARSREGSDDYSRMARQKCVMTALLTQISPRKALTNFNEIAQASTDMISTDIPGGALADFAKLALLARDQKVATVSLVPPQIDTAHPDLDKIRTMVETAIDRAESREQPKSTRKKRSAKVTGASLGSRNDGYVANETDDVAAAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVY1</accession>
    <name>A0A0Q8UVY1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tryptophan 2,3-dioxygenase</fullName>
            <shortName evidence="1">TDO</shortName>
            <ecNumber evidence="1">1.13.11.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Tryptamin 2,3-dioxygenase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Tryptophan oxygenase</fullName>
            <shortName evidence="1">TO</shortName>
            <shortName evidence="1">TRPO</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Tryptophan pyrrolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Tryptophanase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">kynA</name>
        <name evidence="2" type="ORF">ASE19_19935</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L-tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-tryptophan + O2 = N-formyl-L-kynurenine</text>
            <dbReference type="Rhea" id="RHEA:24536"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:58629"/>
            <dbReference type="EC" id="1.13.11.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
        <text evidence="1">Binds 1 heme group per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid degradation; L-tryptophan degradation via kynurenine pathway; L-kynurenine from L-tryptophan: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the tryptophan 2,3-dioxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.13.11.11" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895917.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46141">
        <property type="protein sequence ID" value="KRC46141"/>
        <property type="gene ID" value="ASE19_19935"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00333">
        <property type="reaction ID" value="UER00453"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004833">
        <property type="term" value="F:tryptophan 2,3-dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019441">
        <property type="term" value="P:tryptophan catabolic process to kynurenine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01972">
        <property type="entry name" value="T23O"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037217">
        <property type="entry name" value="Trp/Indoleamine_2_3_dOase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004981">
        <property type="entry name" value="Trp_2_3_dOase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10138">
        <property type="entry name" value="PTHR10138"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03301">
        <property type="entry name" value="Trp_dioxygenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140959">
        <property type="entry name" value="SSF140959"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="1" id="KW-0349">Heme</keyword>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0823">Tryptophan catabolism</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="1">
        <location>
            <begin position="35"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="1">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="235"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="263" mass="29817" checksum="D40D577D07ED0970" modified="2016-01-20" version="1">MTDQHPALTYSSYLALDDVLAAQHPRSDEHDELLFIVIHQVYELWFKQMLHELTGLQQRLEDGDTARSLHTLGRVLAILKVAVAQVDVLETMTPRQFTSFRGRLDASSGFQSEQFRELEATLGRRDRRVFEHYPEGSPGRGRIAAAMSRPSVFDSFLRYLDQLGYDVPPAALERDLTTPWEPSPDVQRLLLAAYADDGGAAQVAERLVDLDEGLQEWRYRHVKMVERTIGAKMGTGGSSGAQYLWSTVTHQLFPDLWAIRSEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWV7</accession>
    <name>A0A0Q8UWV7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Biotin--[biotin carboxyl-carrier protein] ligase</fullName>
            <ecNumber evidence="2">6.3.4.15</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_20920</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.15" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46305">
        <property type="protein sequence ID" value="KRC46305"/>
        <property type="gene ID" value="ASE19_20920"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004077">
        <property type="term" value="F:biotin-[acetyl-CoA-carboxylase] ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd16442">
        <property type="entry name" value="BPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004408">
        <property type="entry name" value="Biotin_CoA_COase_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003142">
        <property type="entry name" value="BPL_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004143">
        <property type="entry name" value="BPL_LPL_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008988">
        <property type="entry name" value="Transcriptional_repressor_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02237">
        <property type="entry name" value="BPL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03099">
        <property type="entry name" value="BPL_LplA_LipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50037">
        <property type="entry name" value="SSF50037"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00121">
        <property type="entry name" value="birA_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51733">
        <property type="entry name" value="BPL_LPL_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0092">Biotin</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BPL/LPL catalytic" evidence="3">
        <location>
            <begin position="16"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00024227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="277" mass="28574" checksum="BF16E382D43CFD39" modified="2016-01-20" version="1">MTLGSSPNPDRAPLDGDRLAAAFALTPGAGVELLPEAPSTNQLAGERARAGATEGLVVAADHQVAGRGRLDRTWETPAGTAVTFSLVLRPSVPPASWPWLPLLVGHNVAKALTAHGYDARVKWPNDVLLDGDRKVAGILVERVETPDGPAAIVGVGINVAMDADELPVETATSLSIASPDGADVPDRTQVLIDAVAAIREGYDVWQAGGELGTARLASSYRAQCATLGRDVRVDLPGGGELTGRAVDVDDDGRLVVETAGGPERVGAGDVVHVRATD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXJ8</accession>
    <name>A0A0Q8UXJ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pyridine nucleotide-disulfide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22490</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896342.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46573">
        <property type="protein sequence ID" value="KRC46573"/>
        <property type="gene ID" value="ASE19_22490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="403436at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="5"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="368" mass="39855" checksum="00B0E3849610D98C" modified="2016-01-20" version="1">MTRPRVVVAGLGDSGLLTAIHLARADVDVVGISSKPGLVSGQELGLRLARPDDWARDYRIGFDRFRRLDRAEVVHGELVGLDPEARTVDVGDRTIRYDVLVIATGVSNGFWRRPGFQTDADVTAGLAAAHDRLGAAPSVLVVGGGAAAVSSALQLATRWPDKPVTLAFPGDRALPQHHPRVWQVARRRLASAGVRLLPGHRAVVPDGSALDEITTGPVAWSTGQPATDAGAVLWAIGKVRPNTDWLPHELLDGHGFVRVEPTLRLPGLPDVFAIGDVAATDRLRSSARNRADKLLGRNVRAHLAGRPLVEYRAPRRRWGSVLGPEADGLRVFAPSGHPFRFPAWTVDRMLQPLIVRRGIYGGVRPFRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXS4</accession>
    <name>A0A0Q8UXS4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15730</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893538.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50069">
        <property type="protein sequence ID" value="KRC50069"/>
        <property type="gene ID" value="ASE19_15730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013211">
        <property type="entry name" value="LVIVD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08309">
        <property type="entry name" value="LVIVD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359514" evidence="2">
        <location>
            <begin position="35"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="488" mass="51611" checksum="D3F40F84705389FC" modified="2016-01-20" version="1">MGALRNTITDPVRRRVVVALAAATVLIGGTIAAAEDPVVPQPVPEASCGPGSQPETTSLQGRAPKADFTSGRAQLGYTCNTVEVGHHGSSGGFKALRYTDAQGHTCAFYDSTRILGLDVVPNLLNGTGLGVVVLDMADPAKPVKTANLVTPAMLSPHESLLVNEERGLLVGVMGTLATAPGVLDVYDVRTDCRRPRLLSTTLAGVLGHESGFSPDGRTFWTAGAAGFTMTAVDLTEPRRPRVLMTKTGVVAHGLRFSDDGDTMYVANMGTPSANAILDRPSLQVYDVSQVQARTPGARIAKVGEVDWPGISIPQVAEPFHRDGRDYVLEVDEFTDWFGDGWTVDFQNSPVGGARIIDVTDPTSPSLVSDIRLEVHQKENRTKEVMSDPGSALPIGGYSAHYCSVPTRDAPDLAACSMVGSGLRIFDISDVAHPVEVAYFNKPANGGASALSQPGWDVDHDSVWFTDGTSGFYVVRLTNGVEDLLPSGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXS7</accession>
    <name>A0A0Q8UXS7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Probable cell division protein WhiA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">whiA</name>
        <name evidence="8" type="ORF">ASE19_15850</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Involved in cell division and chromosome segregation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the WhiA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893558.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50091">
        <property type="protein sequence ID" value="KRC50091"/>
        <property type="gene ID" value="ASE19_15850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1634356at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043937">
        <property type="term" value="P:regulation of sporulation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.28.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01420">
        <property type="entry name" value="HTH_type_WhiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027434">
        <property type="entry name" value="Homing_endonucl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018478">
        <property type="entry name" value="Sporu_reg_WhiA_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003802">
        <property type="entry name" value="Sporulation_regulator_WhiA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023054">
        <property type="entry name" value="Sporulation_regulator_WhiA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039518">
        <property type="entry name" value="WhiA_LAGLIDADG_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37307">
        <property type="entry name" value="PTHR37307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02650">
        <property type="entry name" value="HTH_WhiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14527">
        <property type="entry name" value="LAGLIDADG_WhiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10298">
        <property type="entry name" value="WhiA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00647">
        <property type="entry name" value="DNA_bind_WhiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1 4" id="KW-0132">Cell division</keyword>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="WhiA_N" evidence="6">
        <location>
            <begin position="20"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="LAGLIDADG_WhiA" evidence="7">
        <location>
            <begin position="128"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_WhiA" evidence="5">
        <location>
            <begin position="221"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF10298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC50091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="328" mass="35109" checksum="02E2BF97B3A7237C" modified="2016-01-20" version="1">MAMTAQVKAELASTPVTKACCRKAEVASTLRFAGGLHIVAGRIVVEAELDTGAAARRLRKDISEIYGQSSDVVMVQGNGLRKGSRYIVRVAKDGEALARQTGLLDQRGRPVRGLPPAVVSGGACDAVAAWRGAFLAHGSLTEPGRSSSLEVTCPGSEAALALVGVARRLGIQAKAREVRGVDRVVIRDGDAIGQLLTRLGAHETLMAWEERRMRREVRATANRLANFDDANLRRSARAAVTAGARVDRAMEILGEEVPDHLRMAGELRLQHKQASLEELGQLHDPVLTKDAIAGRIRRLLAMADKRAEELGIPDTEASLTPEMLAGDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY74</accession>
    <name>A0A0Q8UY74_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16590</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893688.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50219">
        <property type="protein sequence ID" value="KRC50219"/>
        <property type="gene ID" value="ASE19_16590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1522739at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009597">
        <property type="entry name" value="DUF1206"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06724">
        <property type="entry name" value="DUF1206"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="150"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="202"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="241"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1206" evidence="2">
        <location>
            <begin position="27"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1206" evidence="2">
        <location>
            <begin position="110"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1206" evidence="2">
        <location>
            <begin position="200"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="271" mass="27712" checksum="D0D33897179AA170" modified="2016-01-20" version="1">MAATGDAAEQAAQEARDHPVLDGMARAGFVVYGIVYVLIGWLAAQLALGHPAGSASGSGALEEIAQKPLGAIALWLSAAGLGALALWQVCQAVAGHRDEDGWRRGAARIGSSSRAVVFCALGVTSVRTALGDGGGSGGGSTGAVMRQPWGPALVLAVAVVLLVIAGTSAWRGATDRWRKDLEAGGRTGDVGRVVQVVARAGHLSRAVAFAVLAFLVARAALEHDSRQLGLDQAIVRFRDEPLGPALILVIAAGLACYGVFHLVRAAYLRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY78</accession>
    <name>A0A0Q8UY78_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Proteasome subunit beta</fullName>
            <ecNumber evidence="3">3.4.25.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">20S proteasome beta subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Proteasome core protein PrcB</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">prcB</name>
        <name evidence="5" type="ORF">ASE19_16575</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>Cleavage of peptide bonds with very broad specificity.</text>
            <dbReference type="EC" id="3.4.25.1"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="3">The formation of the proteasomal ATPase ARC-20S proteasome complex, likely via the docking of the C-termini of ARC into the intersubunit pockets in the alpha-rings, may trigger opening of the gate for substrate entry. Interconversion between the open-gate and close-gate conformations leads to a dynamic regulation of the 20S proteasome proteolysis activity.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Protein degradation; proteasomal Pup-dependent pathway.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">The 20S proteasome core is composed of 14 alpha and 14 beta subunits that assemble into four stacked heptameric rings, resulting in a barrel-shaped structure. The two inner rings, each composed of seven catalytic beta subunits, are sandwiched by two outer rings, each composed of seven alpha subunits. The catalytic chamber with the active sites is on the inside of the barrel. Has a gated structure, the ends of the cylinder being occluded by the N-termini of the alpha-subunits. Is capped by the proteasome-associated ATPase, ARC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase T1B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.25.1" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893685.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50216">
        <property type="protein sequence ID" value="KRC50216"/>
        <property type="gene ID" value="ASE19_16575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1129370at2"/>
    <dbReference type="UniPathway" id="UPA00997"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019774">
        <property type="term" value="C:proteasome core complex, beta-subunit complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004298">
        <property type="term" value="F:threonine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019941">
        <property type="term" value="P:modification-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010498">
        <property type="term" value="P:proteasomal protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02113_B">
        <property type="entry name" value="Proteasome_B_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000243">
        <property type="entry name" value="Pept_T1A_subB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001353">
        <property type="entry name" value="Proteasome_sua/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023333">
        <property type="entry name" value="Proteasome_suB-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022483">
        <property type="entry name" value="PSB_actinobac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00227">
        <property type="entry name" value="Proteasome"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00141">
        <property type="entry name" value="PROTEASOME"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03690">
        <property type="entry name" value="20S_bact_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51476">
        <property type="entry name" value="PROTEASOME_BETA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 3" id="KW-0645">Protease</keyword>
    <keyword evidence="3 5" id="KW-0647">Proteasome</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0888">Threonine protease</keyword>
    <keyword evidence="3" id="KW-0865">Zymogen</keyword>
    <feature type="propeptide" id="PRO_5006508376" description="Removed in mature form; by autocatalysis" evidence="3">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5023429360" description="Proteasome subunit beta" evidence="3">
        <location>
            <begin position="49"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="3 4">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR600243-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="284" mass="29853" checksum="0C179742F21E6EB8" modified="2016-01-20" version="1">MNDARIPGAFLRPGTSSFSDFLAENAPDLLPARRSLPAGSAAELAPHGTTIVAATFPGGLVMAGDRRATMGNVIAQRDIEKVFPADEYSVVGIAGTAGLAVEMVRLFQVELEHYEKIEGTLLSLDGKANRLSALIRANLGMAMQGLAVVPMFAGFDPDRGVGRIFGYDVTGGRHEESAFFTVGSGSLFARGALKKLYRDDLSQDDAVRVCLQALYDAADDDSATGGPDLTRRIFPVVWVVTADGATRMSEDTLGALADQLVGARMVRPDGPVAPLPGGGEEAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYC8</accession>
    <name>A0A0Q8UYC8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PPM-type phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16865</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50267">
        <property type="protein sequence ID" value="KRC50267"/>
        <property type="gene ID" value="ASE19_16865"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07228">
        <property type="entry name" value="SpoIIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="1">
        <location>
            <begin position="10"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="229" mass="23954" checksum="3EC4E2D00A77B46D" modified="2016-01-20" version="1">MLARGRMPALPDGWSHESAMLAASGLEYGGDFIVSDLSADGRRLQMVLVDVCGSGASAVPAAVQFAGALESLIVVVPDEVLLGAANTYLQRQPSDESMATAVQVVLDLATGEYRIRSAGHPPALRWSAGDSAWEVDNARGTALGATDHPEVGESAGVLAPGEALMFYTDGVVESRSADIDEGIAWLQEVAREAALASWDGVADRVIAQVDRGDDDRAVLVVRREPVAGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYL0</accession>
    <name>A0A0Q8UYL0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 10">Phosphoglycerate kinase</fullName>
            <ecNumber evidence="2 7 10">2.7.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7 12" type="primary">pgk</name>
        <name evidence="12" type="ORF">ASE19_15860</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7 10">
            <text>(2R)-3-phosphoglycerate + ATP = (2R)-3-phospho-glyceroyl phosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:14801"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57604"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7 11">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7 10">Belongs to the phosphoglycerate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.3" evidence="2 7 10"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50344">
        <property type="protein sequence ID" value="KRC50344"/>
        <property type="gene ID" value="ASE19_15860"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004618">
        <property type="term" value="F:phosphoglycerate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1260">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00145">
        <property type="entry name" value="Phosphoglyc_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001576">
        <property type="entry name" value="Phosphoglycerate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015911">
        <property type="entry name" value="Phosphoglycerate_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015824">
        <property type="entry name" value="Phosphoglycerate_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036043">
        <property type="entry name" value="Phosphoglycerate_kinase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11406">
        <property type="entry name" value="PTHR11406"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00162">
        <property type="entry name" value="PGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000724">
        <property type="entry name" value="Pgk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00477">
        <property type="entry name" value="PHGLYCKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53748">
        <property type="entry name" value="SSF53748"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00111">
        <property type="entry name" value="PGLYCERATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="5 7 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 10" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="7 8">
        <location>
            <begin position="14"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7 8">
        <location>
            <begin position="52"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="289"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="320"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <begin position="346"/>
            <end position="349"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000724-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000724-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC50344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="390" mass="40249" checksum="BA7B829EF9E5A2DF" modified="2016-01-20" version="1">MDSVSGKRVLVRSDLNVPLDGTTITDDGRIRASVPTIKALAEAGARVVVTAHLGRPKGAPDPAYSLAPVAARLAELLGAPVAFATDTVGASAQETVAALQDGQVALLENVRFNAGETSKDDAERGAFADELAALADAFVSDGFGVVHRKQASVYDVAQRLPHAMGGLVATEIDVLRRLTVEPERPYVVVLGGSKVSDKLGVIDNLLDKADKLLIGGGMVFTFLKADGLEVGKSLLEEDQLDTVRSYQARARELGVEIVLPTDIVVADSFGDEASARVVAATEIPADTLGLDIGPESGKAFAAALADARTVFWNGPMGVFEQAAFAEGTRAVAAALTEVDGLSVVGGGDSAAAVRTLGFDEAAFGHISTGGGASLEYLEGKELPGITVLED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ88</accession>
    <name>A0A0Q8UZ88_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Transcriptional regulatory protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_18900</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893371.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48969">
        <property type="protein sequence ID" value="KRC48969"/>
        <property type="gene ID" value="ASE19_18900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024187">
        <property type="entry name" value="Sig_transdc_resp-reg_cit/mal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45526">
        <property type="entry name" value="PTHR45526"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006171">
        <property type="entry name" value="RR_citrat_malat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0010">Activator</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="2" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="4"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="3">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR006171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="230" mass="24395" checksum="2A2228722FE1502C" modified="2016-01-20" version="1">MTVRVLVVEDEALAAEAHASYVERVPGFVLAGVARSAREAVRALEAAQQAGAPVDLVLLDMNLPDGHGLGLLSGLRAAGHLCDVIAVTAARDTKVVRQAVVQGVVLYLLKPFTFATFRAKLEQYAEYRARLDAAPDEVVQDEVDQLLGSLRPTGSAPLPKGMSPETLRVVTTALRDAAGDLSASEVAALVGASRVTARRYLEHLADQGLAARGVRYGPSGGRPEVSYSWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0V2</accession>
    <name>A0A0Q8V0V2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19340</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893445.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49043">
        <property type="protein sequence ID" value="KRC49043"/>
        <property type="gene ID" value="ASE19_19340"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359590" evidence="1">
        <location>
            <begin position="29"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="312" mass="33369" checksum="075D4924ECDDCB5B" modified="2016-01-20" version="1">MNRKVLAALVVALMLGIGAIAVTDRAAAAPSDDDSAAPLPGDRVRQRSAVELVVKVRYDPRTRAVRVLSKAGRARSTGRPTHRVAVGTRAFGPSQRSARASYTCLVRRDSTGRLRPGNVLRVSADGRSYSLKYLLFPYTLNRARTLGRTLTRQIEFCVTGGGDVWNGFHQWLDGASVAYASRTDRTIGTQWGTEVVDGSVSSTISLKVGGGPVSIGASTTVADKDRHTGSTGRSGDVGRWDQIEPFNPNRVNTFYKSGTTWRWQGSADYQGNNGHLLVEVPQGSGGAVGYVLAAATRAHCKNPFGIGCGDFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1U3</accession>
    <name>A0A0Q8V1U3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15135</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896485.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51418">
        <property type="protein sequence ID" value="KRC51418"/>
        <property type="gene ID" value="ASE19_15135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2137322at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="58"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="224" mass="24332" checksum="B45AB277DEC515E0" modified="2016-01-20" version="1">MASKRGWSRYRPPGEPRTESGAPLDPKPAPKPRSPRKQRTKPKASSAARPGTPWARPLVVLGIVVAVVVGIALAVRAGNDDDDTSGDVDLELLDEAFIADGLAAARSEEGDRQPVAVHLDEYSMTVEYFDPGKDESRYVETNSYSDDVTVRVRKNFYTGYDKPTPFDITVVDPAAMVEAARDALADSEDAYTWEVRVSVPPDGTEPLMVARVSGKDTVERTSAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2W5</accession>
    <name>A0A0Q8V2W5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18550</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893313.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48912">
        <property type="protein sequence ID" value="KRC48912"/>
        <property type="gene ID" value="ASE19_18550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1985559at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="210"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="237"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="311"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="336" mass="36042" checksum="F31DA625439DA128" modified="2016-01-20" version="1">MKAFLQLLRVELRRYLRRRAVQLLMAACVAVPLVIGVVTILDTEPPSDTEIALIEDEAKANRQAELDYCTENPADYGIGSTEDDVAAACERLISDNFDDYTEYGYYDTLRLDDQQNDSGVAVASFLAILLLLAGTTFTGHDWNSGSVSNQLLFEPRRARVWAAKALVVTGGALVAAAVIMSAYWAVLGLVAHSRDTLATGDLLDALQMGWRSAGVAAAAALLGFVLTMLFRSTVATIGVLLGASVAGSLLLAAIGVSERWNPAVNLLALIDNGTTYYSEDACPTGPEVIEGDPDETYSYDSCELEVTFSDASLYLGSFLLVGGVASFVSFRRRDVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5L1</accession>
    <name>A0A0Q8V5L1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19250</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893428.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49026">
        <property type="protein sequence ID" value="KRC49026"/>
        <property type="gene ID" value="ASE19_19250"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359731" evidence="2">
        <location>
            <begin position="30"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="101"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="124"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="165"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC49026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="179" mass="18532" checksum="1B997E25E1F755AA" modified="2016-01-20" version="1">MRKLTPYRTAAAAFAIVLATLGGAYAVGAANDSDDHGPSVVDDSTSDTPEADETDETEAPEAEETDETDAPETDDPETDDPETDAPETDDADDQGQAENEGPDDQGDHRGRDHAEDDADDQGEDDGEHHGGESEAPEVDDDSGHDGSGHDGSDDPTDDPTDEPTDDSGHDGSGHGGSDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5W4</accession>
    <name>A0A0Q8V5W4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HisKA_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09605</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894616.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52678">
        <property type="protein sequence ID" value="KRC52678"/>
        <property type="gene ID" value="ASE19_09605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="135"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="HisKA_3" evidence="2">
        <location>
            <begin position="173"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="365" mass="37867" checksum="22E90D79B283A950" modified="2016-01-20" version="1">MDTNIWLARRWWLIPVAVIVVGGSVAVNLGHDGSVDAGVLGRVLSVVLAAGAALSLLTLDRWPVALVGTGALSGGYFAVGGENGPIFFALIVASFVLATRRPFRSWFPLLLVAAVLIWAGLLVRGLRWDELSVGMWQSIGIGALVSSAAAIGTMMREGRAAWADRTSRAAAEERLRMAQDLHDGVGHGLAVIAMQAGVALHVLDRDPAAARTSLEAIRTTSREALDALRTELATIAGEPAPRRPAPGAESVPALVDRVRSAGLRIEVLGDPGVLDQAVGETAYAVLQEALTNVLRHAFASTATITWERGADSVALRVSDDGRGGAVQDEGMGIGGMRARVAAIGGTFRAGPADGGGFEVTAVLPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V696</accession>
    <name>A0A0Q8V696_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10630</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894791.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52858">
        <property type="protein sequence ID" value="KRC52858"/>
        <property type="gene ID" value="ASE19_10630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1949654at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="153" mass="16735" checksum="9F9B571E52C27039" modified="2016-01-20" version="1">MNLLPLAARHEVGIALPRHWPTRTDPDRGVVVEARSPVVPPGGFVPTLVLRAGPGAGTLPDGAETEDEDAFDLDGRWWVEYLRFAHRVSGCEVVGERWTWHLDDSRVTLTGSVARVDYEDYCDLFEDVAATVDITPGVNASARGSAPRDGGRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6A6</accession>
    <name>A0A0Q8V6A6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RNA polymerase subunit sigma-24</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_10430</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894755.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52822">
        <property type="protein sequence ID" value="KRC52822"/>
        <property type="gene ID" value="ASE19_10430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014325">
        <property type="entry name" value="RNA_pol_sigma-E_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02983">
        <property type="entry name" value="SigE-fam_strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="17"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="104"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="164" mass="18105" checksum="200B50BA8FA07AC6" modified="2016-01-20" version="1">MRRPSREAAYVEFATSRRDQLRRIAYGMCGDWHRADDLVQTTLVKLYVAWPRVARSGSEDAYARKILLNAAIDASRRPASRERPTDVLPEAAAPARLSVEDRTSLVAALQTLPAQQRATVLLRHWLDLSVAETAAELGISEGTVKSHTSRALSALRERLAAADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6S7</accession>
    <name>A0A0Q8V6S7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH marR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16515</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893674.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50205">
        <property type="protein sequence ID" value="KRC50205"/>
        <property type="gene ID" value="ASE19_16515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1681849at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="3"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="120" mass="13008" checksum="B114FDCC857B084F" modified="2016-01-20" version="1">MNPSSVAVQVRQVEARLRRALQPILDEHGLTMDHWRIVAVVGDDPGLAMSAVASLAVVPAASLTRHMDKLVEHGIVVRRIDPADKRRAVVALSPRGEEYAARLRAAEKAADWSQTAGDTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6T9</accession>
    <name>A0A0Q8V6T9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Zinc metalloprotease</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_16605</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1 3">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M50B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50221">
        <property type="protein sequence ID" value="KRC50221"/>
        <property type="gene ID" value="ASE19_16605"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016483">
        <property type="entry name" value="UCP006404_Pept_M50_CBS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006404">
        <property type="entry name" value="UCP006404_Pept_M50_CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0129">CBS domain</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="1 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 3" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="118"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="189"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="224"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="5">
        <location>
            <begin position="258"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006404-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR006404-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="376" mass="38852" checksum="AFA7FDB3F9A0A111" modified="2016-01-20" version="1">MSGPSPAPPRPPVPRGMFRIGRIAGSDVLVSTSWFFVAALIAWIMGPRVDQVQPGLGGWKYVVGLAFAMALYLAILLHEASHALVARRFGFNVESITLHFLGGATTIDGEARRPRQEFWIAVVGPITSLAVGATALGLWFVVHPGLLRLVIEGLAGANLVIGVLNLVPGLPLDGGRVLKAGVWAATGKVHVGTTVAAWGGRLTAVAVVLWAVLSAGTGSVVNPVVLAIVAVFLWTGASQALAGSKVVRQLSTVDATQLARPAVSVPEDLPLAEALRRAEAAGVTSIVTTTSDGRPVGVVSGEAVRAVPPERMPWLPVSAAARSLAGGRALPVGIAGDDLVAALRATPANEYVLIAEDGSVHGVLATADIVREMRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6W0</accession>
    <name>A0A0Q8V6W0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">LacI family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_11255</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894904.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52971">
        <property type="protein sequence ID" value="KRC52971"/>
        <property type="gene ID" value="ASE19_11255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1796334at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="5">
        <location>
            <begin position="9"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="domain" description="HTH cro/C1-type" evidence="6">
        <location>
            <begin position="11"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="323"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="335"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="352" mass="38115" checksum="43EDBFA611179EA3" modified="2016-01-20" version="1">MSEAPRRIPVMADVARLAGVSHQTVSRVVNGQTNLRPETRERVLRAIDQLGYRPNTAARSLVTRRSGTIGVIGSRSGFWGPSTVHRAIQAAGRDAGYFVSSVNVQMLTRDEYVDAIDHLRDQHVEGIILIAANDGAVDAARAHAGRGVPVVVVEGDEAKAEWTVGVDQVVGAEIGTRHLIELGHERILHVSGPSAWAEARARLAGYRNAMYAAGLPPLLQVEGDWSARSGFEAGRQIAERDDVTAVFCANDQMALGLLRSLTEAGRSVPHDISVVGFDDIPEAAYLIPPLTTVRQDFDAVGRRAIQILRSALTDEPAPERLIEPELVVRASTGSPRARDQRDEQDEREGARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6X4</accession>
    <name>A0A0Q8V6X4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11800</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894996.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53066">
        <property type="protein sequence ID" value="KRC53066"/>
        <property type="gene ID" value="ASE19_11800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1387978at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="263" mass="28393" checksum="26E421248FCC9B5F" modified="2016-01-20" version="1">MRIVSVNAWGGARYDDLAAWLPTTGADVVCLQEVTRTPDLGGWTRFEDEARVLPQRADLMADVEAALPAHDGWFTVSDSGPVTDDAGAVHRQHFGLGMLTGPTTLVVAARAAYVHGRYADHGDAWPASNRPRAAQVARFEQDGRFLTLGHLHGLRDDTGKGDSPARRAQAERLAELVEDVREPGDLVVVCGDLNLLPDSETFAVLAGIGLTDLVGTADTRTSSYPKPVRHASYLLVSDPAAVRDFRIIAEPEVSDHRALQVDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7F4</accession>
    <name>A0A0Q8V7F4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acetyl-CoA acetyltransferase</fullName>
            <ecNumber evidence="7">2.3.1.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_13125</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.9" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895756.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53294">
        <property type="protein sequence ID" value="KRC53294"/>
        <property type="gene ID" value="ASE19_13125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="287662at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003985">
        <property type="term" value="F:acetyl-CoA C-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020615">
        <property type="entry name" value="Thiolase_acyl_enz_int_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020610">
        <property type="entry name" value="Thiolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00098">
        <property type="entry name" value="THIOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00099">
        <property type="entry name" value="THIOLASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="5">
        <location>
            <begin position="8"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="6">
        <location>
            <begin position="281"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="3">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="359"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="403" mass="41774" checksum="C069BAB3EC1314EA" modified="2016-01-20" version="1">MAEAFVYDHLRTPRGRGKANGSLHESKPVDLVVGLLDALQERNPGLDPNRVDDVVLGVVSPVGDQGGDIAKTAAIAAGLPDTVAGVQLNRFCASGLEAVNQAASRVRGGFEDLIIAGGVESMSRVAMGSDGGAWASDPATAFKAGFVPQGIGADLIATIEGWSREDVDAYAAQSHHRAAKAWANGYYDRPVVPVKDINGLVVLDRDETVRPDTSVEGLAGLKPSFAQLGADAGFDDVALEKYHWLEKINHVHHAGNSSGIVDGSALTLIGNEQVGQDLGLTPRAKIVATAVSGADPIIMLTGPAPAARKALAKAGLEVGDIDLFEINEAFAAVAMRFMRDMGIDDSVTNVNGGAIAMGHPLGATGAIILGTLIDELERRDLRRGLATLCVGGGMGIATIVELV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7M1</accession>
    <name>A0A0Q8V7M1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Rhodanese domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14990</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896539.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51475">
        <property type="protein sequence ID" value="KRC51475"/>
        <property type="gene ID" value="ASE19_14990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1836139at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070567">
        <property type="term" value="F:cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034683">
        <property type="entry name" value="IspD/TarI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01128">
        <property type="entry name" value="IspD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="51"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="235" mass="23344" checksum="0EB985487FFB8258" modified="2016-01-20" version="1">MTTGTSAAVVVLAAGSGSRVGAEVNKVLLPLRDLPLLAWSVRTALEVPGVDPVVLVCRPGERAAVAAAVQPVIGEREVLLIDGGATRQASEQAALDLLAPRIAAGAVDVVAIHDGARPLAPVALFESAIATAREYGGAVPACGLPGLLPRESAGVPAPGGPGTRLVGVQTPQAFRAAPLLAAYAAAAEAGFDGTDTAAAYARFAPGADVRAVPSGPGNLKVTFAEDLAAAERLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7W5</accession>
    <name>A0A0Q8V7W5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12780</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895694.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53231">
        <property type="protein sequence ID" value="KRC53231"/>
        <property type="gene ID" value="ASE19_12780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359782" evidence="1">
        <location>
            <begin position="26"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="33"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="112"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="357" mass="37195" checksum="EE015E2C067879F9" modified="2016-01-20" version="1">MKNLLTGRRILTLLVVAALVVGAFAWNRDAGSTTVHAYFSSAEGLNVGDEVKVLGVRVGDITDIENRPEGVYVTMKVDAGQPIPADAHAAIVSPSLVSGRFVQFEPVYTGGDKLSDGATIALEKTAVPVTFDDVKQQLTDLATTLGPDRGKKDGPLAEAITAIEHGLRNGNSTDLRQAISELEGAATALSDGRTDLFSTIENLNTFTKNLALNDGALRGFTTELDDVSGVLAANRTDLSGALRDLAALLPAVEKYFKKHRGRIKESVTELNTLAATLADRSNELAGVLQVAPHAIVDLSNTIENQAITGRATLSGLDSAAQLLCGAILGAGGTSEQCTAALQPLLGLVGVDNLGGTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V806</accession>
    <name>A0A0Q8V806_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13205</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895769.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53307">
        <property type="protein sequence ID" value="KRC53307"/>
        <property type="gene ID" value="ASE19_13205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="9"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="160"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="24622" checksum="214621481FC129D2" modified="2016-01-20" version="1">MTAPDRLLRVVLVDDQELVRSGLRRILRRRDGFEIVAECGDGGDVAPTLDGLADGEDPGVDVVVMDLRMRRVDGITATAGVVARPDGPAVLVLTTFDDDEMLSGALRAGASGFLLKDSSADDLIRAVRTVADGGHWLDPSVTGRVLQQFRTTTPAAPRRGSAATDPLTARELEVLRAIALGRSNGEIADELVISELTVKSHVGRIFTKLGLRDRPAAIVYAYDNGLVAPGSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V837</accession>
    <name>A0A0Q8V837_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cupin_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897003.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53500">
        <property type="protein sequence ID" value="KRC53500"/>
        <property type="gene ID" value="ASE19_14280"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_2" evidence="1">
        <location>
            <begin position="38"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="124" mass="12898" checksum="4C8E51A992F5BD44" modified="2016-01-20" version="1">MNVVRAAQAPTFDLPGLRFTSLASPSTSASETCLWRLDVEVGVDSPDAHRLDRDEVFVVLEGRVRLHPDAAELTAGDAAVVPAGDPIQLANTGEGPARLHVAIRAGFVATMADGTAVGTPPWAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V857</accession>
    <name>A0A0Q8V857_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Histidinol phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_14370</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896987.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53516">
        <property type="protein sequence ID" value="KRC53516"/>
        <property type="gene ID" value="ASE19_14370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1752365at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="3"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="258" mass="27790" checksum="066FF62DFF9F0312" modified="2016-01-20" version="1">MSIRAKDLTWGVAGRAIIEDIAIECPEGTLTGLLGPNGSGKTSLLHVVAGLRRPDSGVVELAGEDVHRLPARVRARRIAVLEQHASTTLPLTARQVVELGRIPHRGRWPAARDEGAAEVVEGMRLSGVTHLADRDWQTLSGGERQRVQLARALAQRPEVLMLDEPTNHLDLAHQIDLLATVRALGLTTVAALHDLDLAAAFCDHLVVLGAGRVVASGPPAEVLTARLVREVYGVEATVATHDHSGRLHVVWHDERASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8I4</accession>
    <name>A0A0Q8V8I4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13940</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53439">
        <property type="protein sequence ID" value="KRC53439"/>
        <property type="gene ID" value="ASE19_13940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="989179at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046112">
        <property type="entry name" value="DUF6049"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19516">
        <property type="entry name" value="DUF6049"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="687"/>
            <end position="709"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="255"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="729" mass="75693" checksum="C94D6C1C9AE34F41" modified="2016-01-20" version="1">MVTGLALATSVVAAPAATARPDDDGYDAPLEITIDQLTPGVLPRSGPLEISGTITNVDLETWTTIRLYPMFNAGSDCSSGACAEVMTTEAELEAAADSDPEAPVGVRETNARYDIAKLEPGQSLRYTLRIPQPVLRSLFPKPSSGVYWLGVHALGASASTPNDSVTADGRARTFLPYVAGANPDRVRTAVVLPLRSRVAHDEDGAIGRTSSWEQALGIDGELGGPLAFGAAAGTSPVSWLLDPAVPDAVRRLATGNPAREVTATPDPEEPSPSESSSASSDATSDDDDPDLETPLARSARVWLSQARSVLANDPIAALPYGDPDLSAVASTLPSLYPVARAQQGGELASWDLDTMPVVGAPDGYLDARGIDAVDDGATLLLGQQMFPRESFSARPPVAGLVGDRPVVVTATSAAEGGPGPDPALAPIALRQRILAEAAVRILRSRGKDPDPLVVVLPASVTAAGAADFWAGLDVPWVDLSDLDDVVVPPGSSADGKTPAERQIDPTELSYPATQEEAELPGTVVAEAGRLVRAAQTYQAILGEDYTVGAELVEEALAGTSYAMRADGDAAHRLAQTREWVEDQLGAVTIDAPSGVTLSGTSGSFSVSVRNDLDQPVTVAIRATTDSGATIKVANPIVLAAHSRSSVPIDADMNRTGVHNVTLRLTADDGTALGDEDTLPLRTGQAGVVIWAIIGSGGGILFVAIAIRLVRRFRRRGQVEDTPTPSEATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8P0</accession>
    <name>A0A0Q8V8P0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14210</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897016.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53487">
        <property type="protein sequence ID" value="KRC53487"/>
        <property type="gene ID" value="ASE19_14210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2055010at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="7"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="161" mass="17430" checksum="BE28B99652E07DB0" modified="2016-01-20" version="1">MDAVTGHQVRLATPADADVVGRLLFDFNTEFGAPTPSAAEFAARFTALLARDDVLVALSEADGPDGGATGFAYLTLRPTPYGDGPLAQLEELYVVPALRDGGIGTALLTRSVDEVLARGGIEVHINVDEVDADTRRFYERHGFTNIEPGEDYRMLCYLREL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8R7</accession>
    <name>A0A0Q8V8R7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0749 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50354">
        <property type="protein sequence ID" value="KRC50354"/>
        <property type="gene ID" value="ASE19_16200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010273">
        <property type="entry name" value="DUF881"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37313">
        <property type="entry name" value="PTHR37313"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05949">
        <property type="entry name" value="DUF881"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="255" mass="27298" checksum="58244CC1ED31E7EE" modified="2016-01-20" version="1">MPEPDPPAPAAAPGPQVTPTDRLKRALLRPSRRQVVAGLLMALVGFAAVTQVRVAGTDDTYSGLREQELIDLFSALSGTRQRTEAEIDRLEGVASDLRDDTTKRQTALDQAETEVDTLTILAGLVPVTGPGARITITEDEGRIRLSTMLDTIQSLRTVGAEAIAINGTVRVVAQTSIEETEGGFLIDGERVEAPYVIDAIGEPDVLAGAISFTLGPKKQIEDDGGEVDVRQLRAVDIEAVTDRDETRYALPDQGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8X5</accession>
    <name>A0A0Q8V8X5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Molybdenum cofactor biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_06860</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53806">
        <property type="protein sequence ID" value="KRC53806"/>
        <property type="gene ID" value="ASE19_06860"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00886">
        <property type="entry name" value="MogA_MoaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008284">
        <property type="entry name" value="MoCF_biosynth_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="SSF53218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00177">
        <property type="entry name" value="molyb_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01078">
        <property type="entry name" value="MOCF_BIOSYNTHESIS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MoCF_biosynth" evidence="3">
        <location>
            <begin position="7"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="15564" checksum="E2E804EDBBFBD48E" modified="2016-01-20" version="1">MAGLPAVVVVASNRAAAGVYDDTTGPLIVAALEGWGFSVGAPVVCPDGEPVGLAIAAAVDGGARVVLTTGGTGLTPTDRTPEVTRPLLDREVPGLAEAIRAAGVAKGVPTAVLSRGLAGVAGRALVVNLPGSRGGVKDALAVLDPVIVHAVEQIVGSDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V953</accession>
    <name>A0A0Q8V953_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Sugar ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_11265</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895184.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53631">
        <property type="protein sequence ID" value="KRC53631"/>
        <property type="gene ID" value="ASE19_11265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1254678at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="29"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="74"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="117"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="145"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="188"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="239"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="359" mass="36840" checksum="59E5B4615FE00A30" modified="2016-01-20" version="1">MTPPPAAPAPERPEPTRPGVVSRFVGSTLLWPILALLLLLVVNVVATPSFLNVRIQDGHLYGNVIDIARNSAPVLLVALGMTLIIATRGIDLSVGAIAAIAGAVACTRLVGAADEGAVTTAIMACTWALAVCVLLGLWNGFLVSVLGIQPIIATLVLMVAGRGLAMLVTDGQITTVHNETFSDLATGYVLGLPIASLIAVGMVVAAAVLTRRTALGMLIEAVGINPEASRLAGVRARTIIWTVYVFGAFCAGLAGLIIAANTNSVNANSLGLWIELDAILAVVIGGTALTGGKFSLAGTLVGALFITTLARTIPNVGIPSEANYLFKAVVVVAVCLLQSPRARAALRVRRPAVSKGNPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9W3</accession>
    <name>A0A0Q8V9W3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_08650</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895549.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54117">
        <property type="protein sequence ID" value="KRC54117"/>
        <property type="gene ID" value="ASE19_08650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="8"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="123"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="231"/>
            <end position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="387" mass="41796" checksum="A5CE4B9302BF31A2" modified="2016-01-20" version="1">MTGLIRDTDEHRAIRETVAKICARYDQKYFLERSHAGEDVTELWAELGQAGLLGVHLPEEYGGGGGGMQEAVVVVEELSAHGMPMLVWVISPAMIGSLLVAHGSEEQKQEWVTGIADGTRKVAFGLTEPDAGSNSHEVSTTATRDGDGWRISGTKYYISAIDQCDAILVVTRDAELSTPERKKLSIFLVPTDAPGLSFQRIPTSIVSPDKQFTVFFDDVRVEPEWLVGEAGNGLRQVFAALNPERIMVGAITSGVGRYAVEKAADYAKTRQVWSVPIGQHQGVAHPLAAAHIDVEMARLATQHAAVLYDEGDAGAAEAANIAKYVGAEAALKALDQSIQTHGGNGLAHEYGLSELWFVTRLMRTAPVSREMVLNFVAQTSLGLPRSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9X2</accession>
    <name>A0A0Q8V9X2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Long-chain fatty acid--CoA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08715</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895558.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54126">
        <property type="protein sequence ID" value="KRC54126"/>
        <property type="gene ID" value="ASE19_08715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1015470at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="27"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="444"/>
            <end position="516"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="536" mass="56935" checksum="40F75ECD3AA5CA51" modified="2016-01-20" version="1">MPVLTTSYLPADNSPGLVELTVPALLAQRAAEHPDRLALVGTRHGDGAEVRLTYAELHDEAARVATALRRLARPGDHVALWAPNVVEWVVLQHGAALAGVVLVALNPVLRLAELEYALDHSRASVLLHADRSRDHDMAAVAQAAAAGRPHLRVVSLADRATWQAQEADPVVVGSAPTDPDLPVMLQYTSGTTGNPKGVLLRHRSLVNVARLTVEYVDVPAGAVTINPLPMFHTAACVIGTLGPLWLGGTEVLVEQFAALPVLETMRREQVEVLFFVPAVLGALLEAQRALDQPPPRLAVALGGASNLPATMIEATEQVFGAAVTNLFGQTELAPVLTATRPGDTREDKLRTVGHPLPHVDVKVVDPASGEVVPIGVAGEICARGYQQMVEYLHDPAATAATVDADGFVHMGDLGSMDERGYLTLTGRLKDIIIRGGENIAPAGVETCLAEHPAVVGATVFGLPDDRMGEVVAAAVHLREDVTEAELVAHCRERLSPYKVPTRWFVAGELPVTPTGKVQKFRLAALVGTPALRELTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA20</accession>
    <name>A0A0Q8VA20_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LLM class F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08520</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895524.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54092">
        <property type="protein sequence ID" value="KRC54092"/>
        <property type="gene ID" value="ASE19_08520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019951">
        <property type="entry name" value="F420_OxRdatse_Rv3520c_pred"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03559">
        <property type="entry name" value="F420_Rv3520c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="10"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="350" mass="38505" checksum="776362795ED7F0E9" modified="2016-01-20" version="1">MRLGMIIDYSGGFAETVELLQEYERNGLELVGVAEAYSFDAVSQLGYIAAKTEKLQLMSSIFQIYTRTPSLTAMTAAGLDFVSDGRFILGLGASGPQVIEGFHGVKYDAPLGRTREVIEVCRQVWQRQPVEFRGKHYTVPLTKEDGGSGLGKPLKIINHPLRSEIPISVAALGPKNVALVAELANGWQPLFFHPQKAQQAWGEALEEGFSKRDPGLGELDIQLQVHYHLGEPSPEALQSVRNQLALYVGGMGARDKNFYNQLACRYGYEAEAKEIQDLYLSGRKAEAAAAVPDELVEAVTLIGDEDSLRRQLREFWDAGVRTLLLNSLADEPAERVSQLGRLSVLAAETR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAA9</accession>
    <name>A0A0Q8VAA9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08955</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895602.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54170">
        <property type="protein sequence ID" value="KRC54170"/>
        <property type="gene ID" value="ASE19_08955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359847" description="MlaD domain-containing protein" evidence="1">
        <location>
            <begin position="33"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="50"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="428" mass="44732" checksum="813C6E0237212129" modified="2016-01-20" version="1">MSAIARKERSRSRSVRVGALTLAGAAAVTAFALTAQNGMPDYVPGVSRTSVEVQFEDVGALRAGDDVRIANVRAGFVDSIELVDGAPVVTLELDDGRKVYDDASVTIGARSALGQKYVELDPGTPDAGVLAGPIPSQRASGTVELDAVLDTLDARTRQATGTALRNLGGGLAGRGADLNDGLGHLEKDLRGVGTIAEALDSGEGADLTALLRTTATLASALDGQQEDLSSLVRDTGATLDTLAVDKGARIDEALQQAPDTLRDVRGALKSLDGPLADTRTAVVALRPGVEALGAALPDTRALLRDAVAPLRKVPGVADDATPAIRDLTPVMAHAQPLVRDLGTLFLRAEQPLNTLSPYSNEVILFFQNAASALGQRDRNGGWLRFYPVVNAENVIGNVPIRNPLLRRQPYPAPGEAPAHLTNDVRVLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAH2</accession>
    <name>A0A0Q8VAH2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08595</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54107">
        <property type="protein sequence ID" value="KRC54107"/>
        <property type="gene ID" value="ASE19_08595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1641547at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="110"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="145" mass="15955" checksum="A04061CF3FBCC9B5" modified="2016-01-20" version="1">MVAMMSLGSTPILLSFDLTFFAMAAYRAGDVDPEITQGFSDVAWIGSMLIWPPLTASMVIIGVLILQADGPGFIPRWMGWYSLWCAAAEPFQGLIIFFKDGAFGPRGITTWYLAVPTWGFWIVALSIVMIRLVPRTDQGVSADRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAK2</accession>
    <name>A0A0Q8VAK2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aldehyde dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_08790</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3 7">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895571.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54139">
        <property type="protein sequence ID" value="KRC54139"/>
        <property type="gene ID" value="ASE19_08790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="293754at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006081">
        <property type="term" value="P:cellular aldehyde metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012394">
        <property type="entry name" value="Aldehyde_DH_NAD(P)"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43570">
        <property type="entry name" value="PTHR43570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036492">
        <property type="entry name" value="ALDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="8">
        <location>
            <begin position="9"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="active site" evidence="4 5">
        <location>
            <position position="220"/>
        </location>
    </feature>
    <feature type="active site" evidence="4 6">
        <location>
            <position position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR036492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR036492-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="463" mass="50048" checksum="6C6F3F21D6076AE6" modified="2016-01-20" version="1">MTETTAATGHDAGLDDLIARLRRTFASGRTRSYEWRRAQLEGIVRFLAERETEIAEALAADLGRSPFESWFGDIAPPKGEAELAIKQLRRWMRPQRRRVPLTQMPASARIQYEPLGVALVIGPWNYPVNLSLGPMVAALAAGNCVVLKPSEVAPATSRLMAEALPEYLDTDAFAVVEGDGPTTQALLALGFDHAFFTGGTEIGRKIMAGAADTLTPVILELGGKSPAIVTADADLDVVARRIAWVKLMNSGQTCIAPDYVLVHDSVKEQLVAKIRETIATFTAEEGPKRIVNRRQFDRLAGYLEKTSGVVVEGGVTDPEALTITPTILVDPAVDEPAMTEEIFGPILPVRGFASVDEVIGFVNGRPKPLGLYVFSKDRSVADRLVEEIPAGGAVVNHCAIHYLIPSLPFGGVGASGMGAYHGEWGFQALSHRKSVAVKGFRPDPSIVYPPYGPKARALMRRLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAP4</accession>
    <name>A0A0Q8VAP4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08925</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895596.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54164">
        <property type="protein sequence ID" value="KRC54164"/>
        <property type="gene ID" value="ASE19_08925"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="75" mass="8159" checksum="A875B6B0129B3691" modified="2016-01-20" version="1">MELALAAVVQLALGVGLFWLGRWGRLGADRLVPRRSDAADQRRRADALARSGLFCQGIGLLLMLFALYTSITALD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBP4</accession>
    <name>A0A0Q8VBP4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Biotin carboxylase</fullName>
            <ecNumber evidence="2">6.3.4.14</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_13015</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>biotin</name>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.14" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895735.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53273">
        <property type="protein sequence ID" value="KRC53273"/>
        <property type="gene ID" value="ASE19_13015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="361205at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004075">
        <property type="term" value="F:biotin carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001882">
        <property type="entry name" value="Biotin_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00289">
        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00878">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50979">
        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00188">
        <property type="entry name" value="BIOTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0092">Biotin</keyword>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="10">
        <location>
            <begin position="1"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="9">
        <location>
            <begin position="120"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="domain" description="Lipoyl-binding" evidence="8">
        <location>
            <begin position="569"/>
            <end position="644"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC53273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="654" mass="69624" checksum="4FA607688833376C" modified="2016-01-20" version="1">MITRILVANRGEIARRVFRTARRLGIDTVAVHSDADAGLPFVREADAAVRLPGNTPAETYLRGDLIIAAAKKSGADAIHPGYGFLSENAAFARQVADAGLTWIGPDPDSIDRMGSKIESKKLMEAAGVPVLGNLSVDTATEEDLPLLVKASAGGGGRGMRVVRALADLAGEVELASAEAESAFGDGTVFVEPYVERGRHVEVQVVGDGKGGVLVFGERDCSLQRRHQKVVEEAPAPGLTEEVAAALHDAARKAAEAIDYRGAGTVEFLYDADTQRFYFLEMNTRLQVEHPVTEQVYGVDLVELQVAVAEGRDLPAIDPEPDGHAIEVRLYAEDPAADYAPQTGRLLELELEHDDTFALDGYGVRLDTGFESGDEVGTFYDAMLSKVIVWAPTREQAARSLARVLEKARIHGLTTNRDQLVASLRHPAFLDLTGLATSFYGDHPETLASAGADDLLPLVGAVALAEHRRLGARVQSRIPAGFRNVVAGPRTTRLGLAGEEVDVQWYGGRDGYRSAERDDVTVVSAAPDEVVVDVDGVTRRYDVRVRPDAVLVDGPRGGATLRIVPRFVDPSTQVAAGSLLAPMPGSVIAVRAAVGDVVQEGQPILVMEAMKMQHTIAAPYAGTVTELSASAGQQVEAGTVLAVVEALEASSEEEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC64</accession>
    <name>A0A0Q8VC64_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LLM class F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12890</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895713.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53251">
        <property type="protein sequence ID" value="KRC53251"/>
        <property type="gene ID" value="ASE19_12890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019921">
        <property type="entry name" value="Lucif-like_OxRdtase_Rv2161c"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03619">
        <property type="entry name" value="F420_Rv2161c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="292" mass="32056" checksum="150D189FD5A123B5" modified="2016-01-20" version="1">MDFAMVTAYQPVDQLVALARAAEDAGFRSLSIADHVVDLETVATPYPYTRTGERRWEPDVDWPDPWVTVGALGQVTTRLEFFTSIYVAAMRNPFVVAKAVGTAAALCGGRVALGVGVGWCREEFELLEQEFGTRGRRTDEALDLMKRLWEPGWTEFCGEFYSCERLAMKPEPPGPVPVWVGGLSDVAMRRAARHDGWVGDMATVEEAIAIAGRLRELRAEAGRDLDEPFDVVPALTDALVPEDFVRAAEGGVTMCMTMPWMYYVGQHAPLGDKIAAVERFGAEVIAPVRALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCL9</accession>
    <name>A0A0Q8VCL9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Disulfide bond formation protein DsbA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05150</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894229.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54852">
        <property type="protein sequence ID" value="KRC54852"/>
        <property type="gene ID" value="ASE19_05150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="996965at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001853">
        <property type="entry name" value="DSBA-like_thioredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01323">
        <property type="entry name" value="DSBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DSBA" evidence="1">
        <location>
            <begin position="10"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="210" mass="23521" checksum="A6362A16303B573F" modified="2016-01-20" version="1">MTTPTPNRADLWFDPLCPFAWITSRWILEVEEVRDIEVHWHVMSLAYLNKDRDIPDAYREMLAPAWGPVRVLVAAQQQYGDKVLRPMYDAFGQRIHLEGRKLHEQPDGGLALIAEVLEETGLDPTLIEAATDPSYDDAVARSHHEGMDAVGDDVGTPTIHVNGTAFFGPVLSKIPRGEDAGRLWDGTAAVASFPYFYELKRSRTGDLDFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCM2</accession>
    <name>A0A0Q8VCM2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Aminopeptidase N</fullName>
            <ecNumber evidence="4">3.4.11.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Alanine aminopeptidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">Lysyl aminopeptidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">ASE19_05160</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <reference evidence="16 17" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Release of an N-terminal amino acid, Xaa-|-Yaa- from a peptide, amide or arylamide. Xaa is preferably Ala, but may be most amino acids including Pro (slow action). When a terminal hydrophobic residue is followed by a prolyl residue, the two may be released as an intact Xaa-Pro dipeptide.</text>
            <dbReference type="EC" id="3.4.11.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.2" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894227.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54854">
        <property type="protein sequence ID" value="KRC54854"/>
        <property type="gene ID" value="ASE19_05160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="771837at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045357">
        <property type="entry name" value="Aminopeptidase_N-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042097">
        <property type="entry name" value="Aminopeptidase_N-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024571">
        <property type="entry name" value="ERAP1-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012778">
        <property type="entry name" value="Pept_M1_aminopeptidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001930">
        <property type="entry name" value="Peptidase_M1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014782">
        <property type="entry name" value="Peptidase_M1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027268">
        <property type="entry name" value="Peptidase_M4/M1_CTD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11838">
        <property type="entry name" value="ERAP1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01433">
        <property type="entry name" value="Peptidase_M1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17900">
        <property type="entry name" value="Peptidase_M1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00756">
        <property type="entry name" value="ALADIPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63737">
        <property type="entry name" value="SSF63737"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02412">
        <property type="entry name" value="pepN_strep_liv"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="16" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M1_N" evidence="15">
        <location>
            <begin position="115"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M1" evidence="13">
        <location>
            <begin position="240"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="domain" description="ERAP1_C" evidence="14">
        <location>
            <begin position="533"/>
            <end position="845"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012564"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00015611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00031533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF11838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF17900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KRC54854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="855" mass="94177" checksum="73A811FC87D6710C" modified="2016-01-20" version="1">MPGTNLTRDEAATRAALVDVISYVIDLDLSDATRAGVETFGSTTTLTFTCRQPGASTFADLVDATIHEITLNGVALDPATAYADSRIALPDLQADNVLVVRADCTYSHTGEGLHHFVDPADDRVYLYSQFEVPDARRVYTTFEQPDLKAPFTFNVTAPAHWKVVSNAATPEPTPVSDGVALWAFPATKPMSTYITAVVAGDYYEVQDVYEGTYGTIPLGHYSRQSLKEYLERDREEIVTLTKQGFEFFEDAFGYPYPFGKYDQLYVPEYNMGAMENAGCVTLRDEYLPRSRQPRSFYEFRASVILHEMAHMWFGDLVTMKWWDDLWLNESFAEWACYHAEALATSYDDAWTGFTNARKQTGYRADSLPSTHPIAADNFDLHAVEVNFDMITYAKGASVLKQLVAWVGLDPFLAGLKQYFHDHEFSNTEFSDLLTALEKASGRELTGWAQEWLQTAGTNTLSPAFELTPEGTYASFAINQTAPAEHPTLRRHRVGVGFYNTAEGRLVRTDYVEVDVEGARTELAELVGRAQPELLLLNDNDLAFAKIRLDERSRATAVARLSDVDDSLARALIWSAAWDMTRDAELAATDYVELVLGNIGQETDAWGVSRIPVYAAQAVTLYSNPAARPALAARWEQGLRALLESAAPGTDHQLTFARAFASAARSDEAVAEVEALLDGSLVLEGLAIDQDLRWGLLTALARVGRADDTRIDAELAQDNTISGQEKSAAARAAMGTPEAKERAWTQALLDPSVPNETQRSVVLAFWQAGQEDVLAPYVATYLDEVAGTWERLGAHKASVALEFIFPRLIATQTTLDTVDAWLAANADSTNPGALRYVREGRADVARALAAQAADAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCQ1</accession>
    <name>A0A0Q8VCQ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06040</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894072.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55002">
        <property type="protein sequence ID" value="KRC55002"/>
        <property type="gene ID" value="ASE19_06040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2074172at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359911" evidence="1">
        <location>
            <begin position="29"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="19355" checksum="238085900CADEB98" modified="2016-01-20" version="1">MSRRDRLTCALGLTLVLVALTVALVACGDTSDGGRRDMDDDAKVTALEDDVSSARDGVVRAVAAALGSDFVGGKRRHRWCGESYAPRGVRLDEHLRFAPSPLGVQGATDAAARVLEEQGWTVERPGNPAVVVGTRGAVEVRVEAGPAAVQLDLGNPDCLETSDDVARAFADRDIADVAWESPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCR4</accession>
    <name>A0A0Q8VCR4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Flavoprotein disulfide reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_05750</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="2">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894124.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54952">
        <property type="protein sequence ID" value="KRC54952"/>
        <property type="gene ID" value="ASE19_05750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="267896at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001100">
        <property type="entry name" value="Pyr_nuc-diS_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000350">
        <property type="entry name" value="Mercury_reductase_MerA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="4">
        <location>
            <begin position="3"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_dim" evidence="3">
        <location>
            <begin position="343"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="177"/>
            <end position="184"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="264"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="305"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="455" mass="47378" checksum="65B5EDF01630BAD2" modified="2016-01-20" version="1">MTRVVIVGGGPGGYESALVAAQLGAEVVVVDSDGIGGSAVLTDCVPSKTLIATAEVMTDLTEAGELGIVVERPRVDLAKVNQRVKALALAQSSDIELRLAREGVTVVHGRGRLDGPSRVIATADDGTESSYDADAILVATGAAPRTLPSAQPDGERILTWEQVYDLDVVPEHMIVVGSGVTGAEFASAYQALGIPVTLVSSRERVLPGEDQDAAQVLEDVATRRGMTVLGQSRMQSVARDGDVVTVTLADGREVTGSHCILALGSVPNTADLGLEEAGVHLDDGGFIEVDKVSRTSARGVYAAGDCTGVFMLASVAAMQGRIAMWHFLGDAVQPLDLRDVCSNVFTSPEIATVGVTQKQVDAGEVFAEVVLQPLATNARAKMQGITDGFVKLFISPGSGRLLGGVVVGPRASELIHPVTLAVTERLTADEFANTFTVYPSISGSIAEAARRLHQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCR5</accession>
    <name>A0A0Q8VCR5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Antitoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06195</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Antitoxin component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894439.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55029">
        <property type="protein sequence ID" value="KRC55029"/>
        <property type="gene ID" value="ASE19_06195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047723at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006442">
        <property type="entry name" value="Antitoxin_Phd/YefM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02604">
        <property type="entry name" value="PhdYeFM_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="86" mass="9355" checksum="EE2E498F1E2BC937" modified="2016-01-20" version="1">MKTVASRDLRNHTATVLAEVGAGSPVAVTVHGEVVAELHPPSRLRPDYVLRSDLVRFLEQRRADPALADLLEEISGGTTDDLDPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCS9</accession>
    <name>A0A0Q8VCS9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 13">Dihydrolipoyl dehydrogenase</fullName>
            <ecNumber evidence="3 13">1.8.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">ASE19_05845</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <reference evidence="16 17" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>(R)-N(6)-dihydrolipoyl-L-lysyl-[protein] + NAD(+) = (R)-N(6)-lipoyl-L-lysyl-[protein] + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:15045"/>
            <dbReference type="Rhea" id="RHEA-COMP:10474"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:83099"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="EC" id="1.8.1.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11 13">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="11 13">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="13">The active site is a redox-active disulfide bond.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.8.1.4" evidence="3 13"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894107.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54968">
        <property type="protein sequence ID" value="KRC54968"/>
        <property type="gene ID" value="ASE19_05845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="267896at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004148">
        <property type="term" value="F:dihydrolipoyl dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006258">
        <property type="entry name" value="Lipoamide_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001100">
        <property type="entry name" value="Pyr_nuc-diS_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012999">
        <property type="entry name" value="Pyr_OxRdtase_I_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000350">
        <property type="entry name" value="Mercury_reductase_MerA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01350">
        <property type="entry name" value="lipoamide_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00076">
        <property type="entry name" value="PYRIDINE_REDOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5 11 13" id="KW-0274">FAD</keyword>
    <keyword evidence="4 13" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7 11 13" id="KW-0520">NAD</keyword>
    <keyword evidence="11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9 13" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="15">
        <location>
            <begin position="4"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_dim" evidence="14">
        <location>
            <begin position="347"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10">
        <location>
            <position position="445"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="50"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="179"/>
            <end position="186"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="202"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="271"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="312"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="318"/>
            <end position="321"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="12">
        <location>
            <begin position="41"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU003692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KRC54968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="466" mass="49293" checksum="49067C379052B071" modified="2016-01-20" version="1">MTHFDVLVLGAGPGGYVAAIRASQLGKSVAVIEKKYWGGVCLNVGCIPSKALLKNAELAHTLTHEKAKYGIEGDATMAYGPTHARSRQVSAGIVKGVHYLMKKNKVTEVDGWGTLTGPKTVSVALNDGSVQEYTCDNLIIATGATVRSVPGVEPNGKNIVTYEEQILDENVPSSMVIGGSGAIGVEFAYVMKNFGVDVTIVEFLDRMVPTEDADVSKELAKHYKKLGIKVLTSTAVKGVEDTGSGVKVRIAPAGGGEEQVLEADKFLAAFGFAPRVEGYGLEAAGVKLTERGAVEIDEFCRTNVEGVYAIGDCTGKMMLAHVAEAQGIVAAETMSGAETMPVEYDFVPRATYCQPQIGSFGYSEQQAKDKGYDVKTATFPFSANGKAQGLGEGVGFVKIVADAEYNEILGAHMIGPDVTELLPALTLAQKWDLTADEVGRNVFAHPTLSEAVKEAIHGIAGHMINL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCT9</accession>
    <name>A0A0Q8VCT9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pilus assembly protein HicB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10845</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895178.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53625">
        <property type="protein sequence ID" value="KRC53625"/>
        <property type="gene ID" value="ASE19_10845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1988756at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="167" mass="17297" checksum="92BEA47276A28122" modified="2016-01-20" version="1">MAAADSAGPEARQSAERLGYALDPAVRLAVMEAISQAASEITAAMSSGSVDVRLDGRDLDFVVEEGLPDAPAAPAASTVPLPPAPSAAEDEGLARVSLRLPESLKTRADDAAAQAGQSLNTWLVNLIRSATSERAVHVDVDLSSVPFGGDFPFSSGRPGNRRMTGWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD15</accession>
    <name>A0A0Q8VD15_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Acetamidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06145</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894430.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55020">
        <property type="protein sequence ID" value="KRC55020"/>
        <property type="gene ID" value="ASE19_06145"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004304">
        <property type="entry name" value="FmdA_AmdA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31891">
        <property type="entry name" value="PTHR31891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03069">
        <property type="entry name" value="FmdA_AmdA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="357" mass="37139" checksum="E4287E3B4CF8A219" modified="2016-01-20" version="1">MILQPGVGPIRAEAYLPAEPATLLWGRLPCAGDVPLLGVTPGTEVTFDTVSHEGLLEDQGRDPRAFFARHGVPAGEVLDDAVAIAASDLPHAFGVDGPHLVSRPIHVEGARRGDLLAMTLVEALPRVPYGVVSNRHGKGALAGELPAGGDTVSVFAAVSDDGTRGLMPLRDGGEPVVSFPLAPFLGVMGVATATPERAHSVPPGAHGGNLDINLLTAGATLYLPVQVDGALAYVGDPHFAQGGGEVSLTAMEASLRATVRLDVVPREDAVHRFGELAGPLAETREHLVPTGLDPDLDVAVQNCVRAAIALLGARYGMAPHLAYAYLSAATDFDVSQVVDVVKGVHARIRKSDFPRQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDB8</accession>
    <name>A0A0Q8VDB8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L23</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplW</name>
        <name evidence="6" type="ORF">ASE19_06575</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL23 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894495.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55092">
        <property type="protein sequence ID" value="KRC55092"/>
        <property type="gene ID" value="ASE19_06575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1978865at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01369_B">
        <property type="entry name" value="Ribosomal_L23_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012678">
        <property type="entry name" value="Ribosomal_L23/L15e_core_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013025">
        <property type="entry name" value="Ribosomal_L25/23"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11620">
        <property type="entry name" value="PTHR11620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00276">
        <property type="entry name" value="Ribosomal_L23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54189">
        <property type="entry name" value="SSF54189"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="100" mass="11136" checksum="E80D3BA6B734F03B" modified="2016-01-20" version="1">MSTLHKDPRDILLAPVVSEKSYSLLDNNKYTFLVRPDANKTEIKIAVEKVFGVKVTSVNTLNRTGKVRRTKNGLGKRKDTKRAIVSLAEGHRIDIFGGQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDX6</accession>
    <name>A0A0Q8VDX6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05115</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894406.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55135">
        <property type="protein sequence ID" value="KRC55135"/>
        <property type="gene ID" value="ASE19_05115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1949020at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025327">
        <property type="entry name" value="DUF4233"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14017">
        <property type="entry name" value="DUF4233"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="115" mass="11995" checksum="5CCFFAB69075D43C" modified="2016-01-20" version="1">MCAAVLTLEAIAVALSIPVMITISDVGPALALSLGLGLAVVAVVAAGMLRRESGYRLGHAVQVGAVGLGFLAPMMFFVGGLFALLWGSAYGLGRKIERERAAAFEQYDRLRESGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE03</accession>
    <name>A0A0Q8VE03_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ethanolamine utilization protein EutN</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07270</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895307.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53875">
        <property type="protein sequence ID" value="KRC53875"/>
        <property type="gene ID" value="ASE19_07270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1832681at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031469">
        <property type="term" value="C:bacterial microcompartment"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004992">
        <property type="entry name" value="EutN_CcmL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036677">
        <property type="entry name" value="EutN_CcmL_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36539">
        <property type="entry name" value="PTHR36539"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03319">
        <property type="entry name" value="EutN_CcmL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159133">
        <property type="entry name" value="SSF159133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51932">
        <property type="entry name" value="BMV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="75"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="96" mass="9732" checksum="D3B56DC6F285A92D" modified="2016-01-20" version="1">MLRAVVTGSVWSTKRIDGLPNGALLEVQVEGGTGHLVAFDVLGSGIGETVLIAQGPVAAAWFPGTPPPVDALIIGSIDNPPAAPAPPARRRTRASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEH4</accession>
    <name>A0A0Q8VEH4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amino acid dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11750</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Glu/Leu/Phe/Val dehydrogenases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894986.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53056">
        <property type="protein sequence ID" value="KRC53056"/>
        <property type="gene ID" value="ASE19_11750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1184827at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006096">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006097">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00208">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02812">
        <property type="entry name" value="ELFV_dehydrog_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00839">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ELFV_dehydrog" evidence="2">
        <location>
            <begin position="181"/>
            <end position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="412" mass="44612" checksum="B687A77F88749F51" modified="2016-01-20" version="1">MKNLLDRFEAKAPEIVFEWHDAETEAKGWAVINSLRGGAAGGGTRMRAGLDRNEVESLAKTMEVKFTVSGPAIGGAKSGIDFDPNDPRRDGVLARWFKAVTPLLKTYYGTGGDLNVDELHDVIPMTERYGLWHPQEGIVNGHFAADERELVQRVGMLRLGVSKVVEDPRYTPDREAKYTIADMVTGWGVAESVVHYYGVYGAALGQSLAGKRVIVQGWGNVGSAAAYYLSLAGARIVGIIDRDGGLMNADGFTPEEVHALFVGKDGNALRAENVIPFAELDDAIWDMGAEIFLPCAASRLVTVEHVKRLVSAGLELISAGANVPFADPEIFYGPTYEFADQHVAVIPDFIANCGMARTFTLLMEGIGEVSDELILGDVSRTIRAALERCHERSPHPTLLAATALEIALDQLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEU3</accession>
    <name>A0A0Q8VEU3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Sodium:proton antiporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_11755</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894987.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53057">
        <property type="protein sequence ID" value="KRC53057"/>
        <property type="gene ID" value="ASE19_11755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1194802at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015299">
        <property type="term" value="F:solute:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006814">
        <property type="term" value="P:sodium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006153">
        <property type="entry name" value="Cation/H_exchanger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018422">
        <property type="entry name" value="Cation/H_exchanger_CPA1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10110">
        <property type="entry name" value="PTHR10110"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00999">
        <property type="entry name" value="Na_H_Exchanger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0915">Sodium</keyword>
    <keyword evidence="5" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="1 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="27"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="56"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="87"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="114"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="183"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="235"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="264"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="302"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="420"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="domain" description="Na_H_Exchanger" evidence="7">
        <location>
            <begin position="11"/>
            <end position="445"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="570" mass="61241" checksum="BD9E1EA4F64D6260" modified="2016-01-20" version="1">MEHEYLYIAGVGLVISIIAVAFSRRTGVATPLLLIAFGVGASYLPGVPDLHVEPDLILAGVLPPLLYASAVRLPVLDLRRNLGLISWLALVIVVVGALGVGYVVHLLFDVPLALAIALGAVVSPTDAVAATAIGRRMGLPPRVMTVLEGESLVNDASALVVLRSALVAASAGTFSLGHAVGDFAWAVVGALLVGTAVGWLTVLVRHRLADPVLNTSISFAVPFLAFVPAEEVHASGVLAVVVAGLVTGHQAGKRFSARHRQMERTNWATISFLLENAVFIVLGFELPRLLAEARGTTSDSRIAAMVLVVLLLLVGLRFVGVAGPLLMDRLRREERADRVRERLGQFEERIEGLTPSSTQEIQRVSMARRRLARASADIAFEQREPLTGRAGLVLAWSGMRGVVTLAAVQTIDVDAEGRSTLVVVACLVAVASLLLFGLTLPPLIRRLGLRPVSPAKQRGEFFTLMQQLRDDTVAQLGPIGELVVDGEPIDPALAESLERRFLPILLGTIQQLRQQKPGLREKSLLVQRLYLDTMREALLSERSIGAYTSETYAQAEALLDREEQRLNAGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGQ8</accession>
    <name>A0A0Q8VGQ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892667.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56650">
        <property type="protein sequence ID" value="KRC56650"/>
        <property type="gene ID" value="ASE19_02125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="442822at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360025" evidence="1">
        <location>
            <begin position="35"/>
            <end position="935"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="935" mass="97999" checksum="156363C1B5407ED1" modified="2016-01-20" version="1">MSARRRAERILFALAFVLGGLAVVLPGGQAPAGAAEGVTKSVTAVRTFIDADGKETEQSRDKVKLRVSQTTNLRGRQEIKVSWEGAHPTGAVAADPSSSDARNQEYPFVLLQCRGVDTDSVAPKGQVKLSPETCWTQTAPERYLAAASNTPSWRFDAWAQAKDRQAVVGPPADLPAACSSVSRLTTERWLPFKAAGGTTYYGGPDPGTGCMPLPPESDDAESGGLPSNTTYGITGKDGKGSVDFAVWTKAENASLGCSAKVACSLVAVPVVGISCDAWGTTLPEGTQLTTKAGVPLTESQVETGDATCRRTGSYEAGEPAASRTSDQAVRGNLWWSASNWRNRITVPLEFAQTAEVCPVESAEKPLELMGSVMLNELTASWRPKFCTTSSLYSFTHVQQAESLARSLVQSGEIKGAFSTAPQPGGYQRPVAQAPIAFSGFAIAFSIDDGDKQRREELNLNARLVAKLLSASYPAVSFVRNGHPGLGDNPLNITLDPEFRALNPGIDERSTLQAGAALQIFSSNSDLVWALTRWLDADPEARAWLDGTPDPWGMKVNPAYKGLELPVDNWPLLDDYVAPQWYIDDNACYRKSPTPYLQLVANPLSGLGAIGLNLQFASSAAATVCRYDGYDATTLPLRTEGRQSVGYRFVLGLVSLPAARRYNLRTAALQSTSTVATGQQFGDAAGRTFVEPDTTGLKAAAGLLAADDDAGTWVLDDAELATAKGRAAYPGAMPVYAVFPTSGEEKATATKLAKFLCYAGGAGQVPGQANGSLPAGYLPLTDDNGFATQHAYLANAVNAVRAQEGAVPALEVSGKAPTLEKACDFSTAAAPVVEPAGQPGGGSVVPPAPVAVDPAPVAEKPVVVAVVPTTEAPLSLTSGEQSSLGRVGLPTLLLLAVASAVAGSVLRWLELLQGLLVSARSSVRGARGSGGRRRAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGS7</accession>
    <name>A0A0Q8VGS7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12385</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53170">
        <property type="protein sequence ID" value="KRC53170"/>
        <property type="gene ID" value="ASE19_12385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1982769at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360023" evidence="2">
        <location>
            <begin position="32"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="167"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="187" mass="18728" checksum="1632DE716B23E412" modified="2016-01-20" version="1">MRSITRPLASAASATLLVLALAACGDGDEKASDDKSPSDPTSAATSDATSDATTGGVVEAKDLCGAIANIVAVTGSIQGTTPTEGEWGKLQDVYGDLTEVELPADIPANEKAGLEVASEAITSLSYDEAKKAFGDADGSSDIPGVSKEENAQAEAFFQWAVKECPDAVGGGQAASSATVPESSVTAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGX0</accession>
    <name>A0A0Q8VGX0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04505</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894423.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54745">
        <property type="protein sequence ID" value="KRC54745"/>
        <property type="gene ID" value="ASE19_04505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="991598at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.150.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018766">
        <property type="entry name" value="Zinicin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042271">
        <property type="entry name" value="Zinicin_2_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39420">
        <property type="entry name" value="PTHR39420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10103">
        <property type="entry name" value="Zincin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03624">
        <property type="entry name" value="TIGR03624"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="434"/>
            <end position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="454" mass="48292" checksum="D86C00FC59F513AB" modified="2016-01-20" version="1">MSNDPGNPGDDQPNPFKGTPFEQLFGALGGGVPGGASPFGPGGQMAFFQQLQSLMQPYDGPLNWNAAGDIARKQVAQEQDPSPTGRDHDRVADSVRLADHWLDATTGFPSGVSTTAAWSRAEWLVETQPVWKVLVEPVAARSVTSLSSGLPEEMKAAAGPLVGIIGQAVGGMLAMQIGQGLGALAGDVLTASDIGLPLGAAGKAALVMSNVRAFAEGLDVTEDDVVLYLALREAAHQRLFAHVPWLREHLIGAVTDYARGLEINAQQIQDQVQEQLRGIDPTNLESMQGLLEGGMFEPPQTEAQTAALSRLEIALALVEGWVDEVVGQATEERMPAAAKLREAVRRRRAAGGPAEQTFAALVGLELRPRRLRDASTLWGGLRARSGAEARDGVWMHPDLLPTAADLDDPLSFRAEATTPEELSEDEFDAELRRLLDGPAASADDTDEPDEPDAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGX3</accession>
    <name>A0A0Q8VGX3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PadR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14650</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897131.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53696">
        <property type="protein sequence ID" value="KRC53696"/>
        <property type="gene ID" value="ASE19_14650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1706427at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005149">
        <property type="entry name" value="Tscrpt_reg_PadR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03551">
        <property type="entry name" value="PadR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PadR" evidence="2">
        <location>
            <begin position="97"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="250" mass="26580" checksum="A443BC49EED8FAE7" modified="2016-01-20" version="1">MNFGQDDCGPWGNPEPRGFQRRQRGDFGPGAWGAWGEPGRGGRHGFGGHGGHGGPPPWLVGLFGQGRPEPGRGPRVRRGDVRSAILDILRAANEREESPNGYQVIQQITERSGGVWKPSPGSVYPTVQQLLDEELVENDEGGRRGMRLTAKGSAWCAEHADELAAVWVPFDRRKDAEAGDGSPAAGGNADLKAEIGQVMGAVWQIVTAGSDGQRRAAVDVLVEARRSLYGILADGPDADPAQTSADEDDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGZ1</accession>
    <name>A0A0Q8VGZ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">30S ribosomal protein S1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpsA</name>
        <name evidence="3" type="ORF">ASE19_01945</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892638.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56620">
        <property type="protein sequence ID" value="KRC56620"/>
        <property type="gene ID" value="ASE19_01945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1235756at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035104">
        <property type="entry name" value="Ribosomal_protein_S1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10724:SF7">
        <property type="entry name" value="PTHR10724:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00681">
        <property type="entry name" value="RIBOSOMALS1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="S1 motif" evidence="2">
        <location>
            <begin position="45"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="2">
        <location>
            <begin position="132"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="2">
        <location>
            <begin position="218"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="2">
        <location>
            <begin position="303"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="442"/>
            <end position="476"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="491" mass="54545" checksum="E2F74C105DA719A3" modified="2016-01-20" version="1">MTSTLSTPLSSHYDDNAPQVAINDIGSEADFLAAIDLTIKYFNDGDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVQVGDKVEALVLQKEDKEGRLILSKKRAQYERAWGTIEEIKEADGVVEGTVIEVVKGGLIIDIGLRGFLPASLVEMRRVRDLQPYVGQTLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRHGFLTQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDPWQHFARTHQIGQIVPGKVTKLVPFGSFVRVEEGIEGLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQANETTAAVDVEEFDPTLYGMEATYDEQGNYVYPEGFDPETGEWLEGFDEQRAKWEEQYAKAHARWEAHVKQQADAKQAEIEAGEANSYSSAAPAEETGGSLASDEALQALREKLTGGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH54</accession>
    <name>A0A0Q8VH54_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06730</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895220.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53789">
        <property type="protein sequence ID" value="KRC53789"/>
        <property type="gene ID" value="ASE19_06730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="7"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="195" mass="22810" checksum="9DFF4089A376B023" modified="2016-01-20" version="1">MTMSSSTATRERILEVAPEVLRRFTLAKFGMEDVARGAGIARQTVYKHFSSRDELLIAMYVREMLENQAPRMVPVVDRPPSPDNLLDVFMTELELARHYPWFDESSEQSMAPRLAEMIFRSETLMQTREAIWFPILERYEAAGVLRPDLDFAATVRWLTYQKFWLLFHPDVLCPDDEERRLYVRRFIIAGLVTTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH90</accession>
    <name>A0A0Q8VH90_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH araC/xylS-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03290</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892863.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56846">
        <property type="protein sequence ID" value="KRC56846"/>
        <property type="gene ID" value="ASE19_03290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1459004at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="214"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="33708" checksum="DD2BEC51B27FA6ED" modified="2016-01-20" version="1">MTSPRRRPHRVGVIALPGVYPYELGIASRFFGAAQVDGRPAYEVVTCSLDGAPVATAADFSVAVTADRSILREVDTVVVPPWETSTSTGDPVGLAALGVPRVVSYCTGAFTVAASGLLDGRAATTHWCAADEFRAAFPQVDFRPDELFVDEGDVLTAAGASAAIDLTLHIIARDLGAAAAADVSRLTLAPPHRGGGQSQFVPRPTLADEAGAMAEVRAWLLGRLDRPVGLTEVAAAFGLSVRTLTRRFRAETGVTLGDWLAQARVERAKELLETSDAGIDRVADLAGFGTAAALRKHFRDRVGLSPQQYRARFSLRASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHL9</accession>
    <name>A0A0Q8VHL9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Transcription termination/antitermination protein NusA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">nusA</name>
        <name evidence="9" type="ORF">ASE19_02970</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Participates in both transcription termination and antitermination.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer. Binds directly to the core enzyme of the DNA-dependent RNA polymerase and to nascent RNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NusA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892814.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56795">
        <property type="protein sequence ID" value="KRC56795"/>
        <property type="gene ID" value="ASE19_02970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="384865at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031564">
        <property type="term" value="P:transcription antitermination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1480.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00945_B">
        <property type="entry name" value="NusA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025249">
        <property type="entry name" value="KH_dom_NusA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030842">
        <property type="entry name" value="NusA_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036555">
        <property type="entry name" value="NusA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013735">
        <property type="entry name" value="TF_NusA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010213">
        <property type="entry name" value="Tscrpt_termination_fac_NusA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22648">
        <property type="entry name" value="PTHR22648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13184">
        <property type="entry name" value="KH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08529">
        <property type="entry name" value="NusA_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69705">
        <property type="entry name" value="SSF69705"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01953">
        <property type="entry name" value="NusA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 7" id="KW-0889">Transcription antitermination</keyword>
    <keyword evidence="5 7" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 7" id="KW-0806">Transcription termination</keyword>
    <feature type="domain" description="S1 motif" evidence="8">
        <location>
            <begin position="112"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="322" mass="34781" checksum="2F178AFFC557F2A4" modified="2016-01-20" version="1">MDIDLSILRTLEREKEIKFDVLVEAIEQALLTAYHKTEGSSAQARVELNRKTGHVSVLAVELDAEGNKVGEYDDTPADFGRIAATTAKQIMLQRLRDAEDEIKFGEFSGKEGDIVSGIIQQGRNPDDVLVDLGKVEAQLPASERVPGEDYSHGTRIKCLVVSVRKGMRGPQITLSRSHPSLVKKLFALEVPEIADGTVEIAAIARESGHRTKIAVHSTVSGVNAKGACIGPMGQRVRNVMAELGGEKIDIVDWSDDPATLVAHALSPAQVQSVTVVDEAAKSARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIHSDEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHY8</accession>
    <name>A0A0Q8VHY8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Ribonuclease H</fullName>
            <shortName evidence="5">RNase H</shortName>
            <ecNumber evidence="4 5">3.1.26.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5 8" type="primary">rnhA</name>
        <name evidence="8" type="ORF">ASE19_03335</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>Endonucleolytic cleavage to 5'-phosphomonoester.</text>
            <dbReference type="EC" id="3.1.26.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="5">Binds 1 Mg(2+) ion per subunit. May bind a second metal ion at a regulatory site, or after substrate binding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 5">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the RNase H family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.4" evidence="4 5"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892871.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56854">
        <property type="protein sequence ID" value="KRC56854"/>
        <property type="gene ID" value="ASE19_03335"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1953872at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006401">
        <property type="term" value="P:RNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09278">
        <property type="entry name" value="RNase_HI_prokaryote_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00042">
        <property type="entry name" value="RNase_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022892">
        <property type="entry name" value="RNaseHI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00075">
        <property type="entry name" value="RNase_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="7">
        <location>
            <begin position="2"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="124"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="11"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC56854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="16348" checksum="51D3AE586E48D390" modified="2016-01-20" version="1">MSSSRVTIHTDGACLGNPGPGGWGAVLRYGDHELELFGGDPATTNNRMELMAAIRALETLTRPSQVDLHTDSSYVRNGILSWVAKWKANGWRTAAKAPVKNDDLWKRLDLAAAGHEVEWHWVKGHAGDPGNERADALAGRGAREAREGSPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI23</accession>
    <name>A0A0Q8VI23_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">AsnC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_03990</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892988.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56971">
        <property type="protein sequence ID" value="KRC56971"/>
        <property type="gene ID" value="ASE19_03990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1844486at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13404">
        <property type="entry name" value="HTH_AsnC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="4"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="147" mass="16235" checksum="3AD00C5DA1A94CD2" modified="2016-01-20" version="1">MSGMDAVDRSILDVLRADSRTSIRDVAAQVGISRASAYARVKKLVDTQVIRAFTIDVDHAALGLGLSAYVHVRTKQNSWKSFREKVWQLEEAAHVALVTGDFDCVILVRARDADHLRELVLERIQALPEVVATQTVLVFEEHVGGPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIC6</accession>
    <name>A0A0Q8VIC6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03755</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892944.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56927">
        <property type="protein sequence ID" value="KRC56927"/>
        <property type="gene ID" value="ASE19_03755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="150800at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021941">
        <property type="entry name" value="DUF3556_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12077">
        <property type="entry name" value="DUF3556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="182"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="210"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="287"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="313"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="342"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="372"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="593" mass="65604" checksum="A3568F2581989846" modified="2016-01-20" version="1">MPFLTPDAPPVDPAEFLTRPRQERIRTLATFWSEFGFGTPKMVHTIYIVKLIVLSIGGGIALATLTSDVGGPFEVDQWWDQPIIYQKVVLWTLFLELFGIGGTWGPLAAHFKPMTGGIAYWARPDTIRLPPWPGKVPFTAGDNRSPVDVLLYLATLASFLFAAASGGTRLDGYGVDMVEPGLMALSAVLLVVCGLRDKILFLAARGEQYLPILIISALAGGTLTFTDFIVAAKLIIVIVWAGAAVSKMNHHFLNVVPPMVSNAPFAPKFLKRAHYNSLPDDLKPSRLAWFMAHVLGTTAELVVPLVLLFSTNWTITLLAVGSMVLFHVFITQTFPLAVPLEWNIVFSYITIFLFAGHFAGEGYAITDFSEGWMLPVFVAALVFFPVLGNLRPDLVSFLPSMRQYAGNWASATWAFKPGAEAKLNQLKKPAKNQIDQLVEGMGYDPDVAEMTMQMTLSWRSMHSQGRGLFSVLQNYLGDQYEDYSLREAEFCCNSVIGWNFGDGHLHDDQLINAIQKRVNFAPGEFVVVWVESQPIHKPTQEYFVMDAALGIVERGTWLVTDCVNEQPWLPNGPIPTNVTFRDAVHHPAVKANA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VID8</accession>
    <name>A0A0Q8VID8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892960.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56943">
        <property type="protein sequence ID" value="KRC56943"/>
        <property type="gene ID" value="ASE19_03835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2103715at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="131" mass="13318" checksum="4EF6CA638AA0BEC4" modified="2016-01-20" version="1">MPQAVQQTLPVGRIDVPNAVRGASTGFSILLIGGFLAPMLTLVSVWAAGAWLAVVAVVAFAVAARRSTRAGIPALHGIFAALLAYALVLPLLLPFEQGRDLGQIAQTVLAAVIVGALTGTLAARRGLPATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJJ3</accession>
    <name>A0A0Q8VJJ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23930</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894009.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57375">
        <property type="protein sequence ID" value="KRC57375"/>
        <property type="gene ID" value="ASE19_23930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2085121at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="103" mass="11473" checksum="562252E5D8A8C144" modified="2016-01-20" version="1">MLLLGVVVLVLGIVGLVMSFFGASVDYKHRSTEILNWDVAPGTLVLWGAGSTLLIVLGLWMMKSGAKQGWRRRKEHKRLAELSEKLEAADPDRRDDLGGRDER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJM3</accession>
    <name>A0A0Q8VJM3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23590</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893948.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57742">
        <property type="protein sequence ID" value="KRC57742"/>
        <property type="gene ID" value="ASE19_23590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1949591at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046036">
        <property type="entry name" value="DUF5994"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19457">
        <property type="entry name" value="DUF5994"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="128"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="17569" checksum="E69D1F1D898B1D29" modified="2016-01-20" version="1">MATSNSSISSAPTATGGQLRLRLAAPDDRNAVDGAWWPRSRDLAVELADLVDHFPPDRPRVARAVFSPPDWEPVVRRVPVARGYVKVGSFPRDDTHLLTLALSDRTRLRLVVIPPGFTQEQGEEALLAGSTPGNAHSASDLLHEVADQPAVDPQGHWDDGGLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKD4</accession>
    <name>A0A0Q8VKD4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Lactamase_B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04275</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894376.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54704">
        <property type="protein sequence ID" value="KRC54704"/>
        <property type="gene ID" value="ASE19_04275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="767622at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12706">
        <property type="entry name" value="Lactamase_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="27"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="265" mass="28157" checksum="5F3BA3D4510CAE74" modified="2016-01-20" version="1">MTSTSSADVPITLIGGPTTLIEYAGLRILTDPTFDEPQSYGEDVTGYEGYTLVKTQSPAMTADEVGKIDVVLASHEHFDNLDLLGRQFSAGVEHVYTTDEVAGIVDGAEALADWESRKVTSPTGQVVTFTAVPAHHGPEGIWQAIGPVIGFVIESPGEKTIYFSGDNSDVDIVREVADRYPDIEIAILNVGGPKFVEMLGDHYITFSDETATDATEVLANATIIPVHADSWGHFTQTTASMKAAATLRGVSDRVVALAPGQSTTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKP2</accession>
    <name>A0A0Q8VKP2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="14 15">Protein translocase subunit SecA</fullName>
            <ecNumber evidence="14">7.4.2.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="primary">secA</name>
        <name evidence="20" type="ORF">ASE19_05110</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">Root79</strain>
        </source>
    </reference>
    <reference evidence="20 21" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="14">Monomer and homodimer. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="14">Cell membrane</location>
            <topology evidence="14">Peripheral membrane protein</topology>
            <orientation evidence="14">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="14">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="14">Distribution is 50-50.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 14 15">Belongs to the SecA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.4.2.8" evidence="14"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894236.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54845">
        <property type="protein sequence ID" value="KRC54845"/>
        <property type="gene ID" value="ASE19_05110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="212453at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017038">
        <property type="term" value="P:protein import"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd18803">
        <property type="entry name" value="SF2_C_secA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01382">
        <property type="entry name" value="SecA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004027">
        <property type="entry name" value="SEC_C_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000185">
        <property type="entry name" value="SecA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020937">
        <property type="entry name" value="SecA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011115">
        <property type="entry name" value="SecA_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014018">
        <property type="entry name" value="SecA_motor_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011130">
        <property type="entry name" value="SecA_preprotein_X-link_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044722">
        <property type="entry name" value="SecA_SF2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011116">
        <property type="entry name" value="SecA_Wing/Scaffold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036266">
        <property type="entry name" value="SecA_Wing/Scaffold_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036670">
        <property type="entry name" value="SecA_X-link_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30612">
        <property type="entry name" value="PTHR30612"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02810">
        <property type="entry name" value="SEC-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07517">
        <property type="entry name" value="SecA_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01043">
        <property type="entry name" value="SecA_PP_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07516">
        <property type="entry name" value="SecA_SW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00906">
        <property type="entry name" value="SECA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00957">
        <property type="entry name" value="SecA_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00958">
        <property type="entry name" value="SecA_PP_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81767">
        <property type="entry name" value="SSF81767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81886">
        <property type="entry name" value="SSF81886"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00963">
        <property type="entry name" value="secA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01312">
        <property type="entry name" value="SECA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51196">
        <property type="entry name" value="SECA_MOTOR_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 14 15" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 14" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 14" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="13 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 14 15" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10 14 15" id="KW-0653">Protein transport</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 14" id="KW-1278">Translocase</keyword>
    <keyword evidence="12 14 15" id="KW-0811">Translocation</keyword>
    <keyword evidence="3 14 15" id="KW-0813">Transport</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="SECA_MOTOR_DEAD" evidence="19">
        <location>
            <begin position="2"/>
            <end position="616"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="17">
        <location>
            <begin position="88"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="18">
        <location>
            <begin position="419"/>
            <end position="621"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="876"/>
            <end position="925"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="104"/>
            <end position="108"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="493"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU003874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS51196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="KRC54845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="960" mass="107326" checksum="8E09117205CE5F24" modified="2016-01-20" version="1">MPVIIDKLLRIGEGKILRQLEGIAKAVNAIEDDFKAMSDDELRGMTDEFRKRLADGETLDDIMPEAFATVREAARRVLGQRHFDVQVMGGTALHLGNIAEMKTGEGKTLVSTLPAYLNALEGKGVHVVTVNDYLAKFQSEMMGRVHHFLGLSVGVILPSMRPAERRVAYACDITYGTNNELGFDYLRDNMASSLEECVQRGHNFAVVDEVDSILIDEARTPLIISGPTQDEVKWYGEFAKIAQKLTRDVDYEVDEKKRTISVLEEGITRVEDHLGIENLYESANTPLISFLHNSIKAKELFRNDKEYVVMEGEVLIVDEHTGRMLAGRRYNDGLHQAIEAKEGVKVREEYQTLATVTLQNYFRLYDKLSGMTGTALTEASEFDKIYGLGVVPIPTNKPMLRKDQPDLVYRTEEAKYDAVVDDIVERHHKGQPVLVGTVSVEKSEYLSNALKKKGVPHSVLNAKVHAEEAKIVAMAGHKGAVTVATNMAGRGTDIMLGGSVEFLADAELRKQGLEPSGETADEYDAAWPAMIEKIKKQVEKEHDEVKDLGGLYVIGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLQDELMRLFKSDWVDRVLLLLKIPDDVPIENKRVTNAIANAQGQVESQNFESRKNVLKYDDVMDRQRKVIYGERREVLEGVDLESQVREFIDDVVTGTVTGSLDEFSEEWDLDQLWTDLKQFWPVSISWKDLAEDAGSQAALHKQDLIDALKADAHAAYDRREEEVGEEVARELERRVLLSVLDRKWREHLYEMDYLREGIYLRAYSQRDPLVEYQREGFDMFAAMMDGIKEETVGFLFNLEVQVEEEEEIHYHADGSAHAGPMHEGAFAEPPVGVVEGGLSLDKISAGLDTEPKATPKVTAKGLDRPKQPQQLAYSAPDETGHEEVRGAGAASNADDEFSDIGRNALCPCGSGKKYKRCHGAPGGPTGVALRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKR1</accession>
    <name>A0A0Q8VKR1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amino acid transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14345</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897139.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53687">
        <property type="protein sequence ID" value="KRC53687"/>
        <property type="gene ID" value="ASE19_14345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="186"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="238"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="299"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="332"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="363"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="388"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="415"/>
            <end position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="604" mass="65049" checksum="0029290B8A9277A4" modified="2016-01-20" version="1">MMCLTGVDYFSTLGYQPGIAFLAAGLLSPIATIVLVLLTLFGALPVYRRVAQESPHGQGSIAMLERLLAGWRGKLFVLALLGFALTDFIITITLSAADASAHVVENPHVPDVLHGQELWITLGLIALLGAVFLKGFTEAIGLAVGLVTVYLVLNAVVIVVAAAHVFENGHVVTDWTGALTTEHGNIALMIAVALTLFPKLALGMSGFETGVAVMAHVEGAPDDDPVRPAVRIRNTKRLLTTAAIMMSIYLIASSLVTTLLIPAAEFEDGGSANGRALAYLAHQFLGDGFGTVYDVSTILILWFAGASAMAGMLNLIPRYLPRYGMAPEWAGAVRPLVCVLTVTAFVITWIFDADVDAQGGAYATGVLVLMTSASVAVALAARKARERGWTIAFTVISVVFVYTTVDNVLERPDGVKIGACFIAAIVAVSLLSRTTRSLELRTTEIEYDAKADAFVRDCARRTLRLVAHDPDHRDVGAYRAKVRQIVEAHELENGGDLIFVEVVVEDYSDFESRVVVTGSVAHKEYRVLTVHAATIPNALAALLLDLRERTGVRPHMYFEWTEGSPVAQMARFLLFGTGEVAPLTREVIRRAESEPRRRPHVHAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMD9</accession>
    <name>A0A0Q8VMD9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_02785</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56761">
        <property type="protein sequence ID" value="KRC56761"/>
        <property type="gene ID" value="ASE19_02785"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd16913">
        <property type="entry name" value="YkuD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041280">
        <property type="entry name" value="Big_10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005490">
        <property type="entry name" value="LD_TPept_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038063">
        <property type="entry name" value="Transpep_catalytic_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17964">
        <property type="entry name" value="Big_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03734">
        <property type="entry name" value="YkuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141523">
        <property type="entry name" value="SSF141523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Big_10" evidence="5">
        <location>
            <begin position="48"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="domain" description="YkuD" evidence="4">
        <location>
            <begin position="235"/>
            <end position="355"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF17964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="387" mass="41084" checksum="1154174EBD89923F" modified="2016-01-20" version="1">MLSVLAVAAAGCDGSGFSPGGGGGDDAPETTAAAVVKATVQANVKAGAQGVPVSTLLRVSAVDGTLTSVTVRSKAGKVTGKIVGGSRWVADERLEPGARYRIRAVATSSDGTTVESITPFSTQALGLDQQTYPSVAPLQGETVGVGMPVVVTFDLPVTNKAAFEKRMKVTATPQQAGSWRWVSDKEAHWRPRTYWKAGSRVSVAVDINGVSAGGGIYGQEDRDVDFKVGDAHVYKVNARTHKMKVFENGKLIRTLPITTGKEGFTTRSGVKVIMEKFASRRMNSETVGIPAGSSEAYDIDDVKWAMRLTNSGEFIHAAPWSVGSQGYANVSHGCTGMSTDNAAWLYDMTRRGDVVEYVGTDRPMEPDNGYGDWNISWASYRADSALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMF5</accession>
    <name>A0A0Q8VMF5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Polyketide cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_02280</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892693.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56675">
        <property type="protein sequence ID" value="KRC56675"/>
        <property type="gene ID" value="ASE19_02280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1719670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="17096" checksum="232B5120E912CF69" modified="2016-01-20" version="1">MTTPAPSLHAEIEVAAPPSTVWALVADVTRMAEWSPQVTSTRLAPATPDHAVGTRFTNRNAHGELTWTTHAEITRYDDGEALAFRVEENWTTWTFELVATAAGTRLRQRRDAPDGISPLSQELTEAFMGGQEAFTASQRAGMAQTLAAIKAAAEGTATS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMT6</accession>
    <name>A0A0Q8VMT6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03805</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892954.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56937">
        <property type="protein sequence ID" value="KRC56937"/>
        <property type="gene ID" value="ASE19_03805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="44"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="411" mass="42946" checksum="106CCE773612BA32" modified="2016-01-20" version="1">MRDNALLGWLRSPFGIGTAVLVLFGGAVIFGLNATHGMPLAERREVRIAFDDLSGLNTGDDVRIGGSRVGYVDDLVLEDGVAVAVIQLDDPDTKLYENAVAARISDRSGLGQKFVTLDPGDPSTGALRSDAVIPASQTVKTEDINELLDTFDPRTRKEAATTLQNLGGGMIGHEDDLHSFARKAPEVLTSTGEVSKALAADGGVPLGDLLTSAERLSGRMASRDDELAALVDEMAVTVDSFAADDGNQVRASLDQAPDTLDAAHSALTKLDTPLEDLAVAMRQVRPGATALGRSTPDLRAFLRESVTPLGKVPGVNEDAEPGVVALDRLVTDARPLAAQLIRTGANGAPVASVVGDYAEDIAYFHTNASGALASGDQAGHWLRILLLPGAESLGLAGTATRDPYPAPGETW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN37</accession>
    <name>A0A0Q8VN37_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">DNA ligase</fullName>
            <ecNumber evidence="5">6.5.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_22935</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the ATP-dependent DNA ligase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.5.1.1" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892566.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58920">
        <property type="protein sequence ID" value="KRC58920"/>
        <property type="gene ID" value="ASE19_22935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1073940at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003910">
        <property type="term" value="F:DNA ligase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071897">
        <property type="term" value="P:DNA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000977">
        <property type="entry name" value="DNA_ligase_ATP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012309">
        <property type="entry name" value="DNA_ligase_ATP-dep_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012310">
        <property type="entry name" value="DNA_ligase_ATP-dep_cent"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016059">
        <property type="entry name" value="DNA_ligase_ATP-dep_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036599">
        <property type="entry name" value="DNA_ligase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04679">
        <property type="entry name" value="DNA_ligase_A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01068">
        <property type="entry name" value="DNA_ligase_A_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117018">
        <property type="entry name" value="SSF117018"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00574">
        <property type="entry name" value="dnl1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00697">
        <property type="entry name" value="DNA_LIGASE_A1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50160">
        <property type="entry name" value="DNA_LIGASE_A3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="2 5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="1 5" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_LIGASE_A3" evidence="8">
        <location>
            <begin position="297"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="268"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC58920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="508" mass="53668" checksum="E93A3EE5C1D064CA" modified="2016-01-20" version="1">MLLRELVDTSSAVAGTRSRKEKVQLIAALLLACSPEERSLVAHYLSGRLRQRRTGLGWRSMATLPSPATEASLTPLEVDAAFAAMAALSGPGSAGARSSAAEELFGRATAAEQAWLRAVVVGEVRQGALEAVTTEALAVATGMPLAVVRRAAMLAGGTTYVVDAAFAGREALDAVGLTVGRPVLPMLASSAPDVAAAVAKAAGPDGVVGVDAKLDGIRIQVHRDGDEVVVATRSLDDITDRLADVVAVARSLPVSRVVLDGEAMTLADDGRPRPFQETASRTASGTGSGAGSVVVPYFFDVLHLDGTDLIDRPAHERWAALERIVPPAYRVQRWVGTSPADAEAFTAQSLADGHEGVVVKDAGAPYDAGRRGSAWVKVKPVHTLDLVVLAVEHGSGRRRGWLSNIHLGARDPSSPTGFVMLGKTFKGMTDEMLAWQTSRFRELEMSDDGWVVTLRPEQVVEIAFDGLQRSTRYPGGLALRFARVVRYRDDKGADEADTIETVRALAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNY5</accession>
    <name>A0A0Q8VNY5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_23115</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58998">
        <property type="protein sequence ID" value="KRC58998"/>
        <property type="gene ID" value="ASE19_23115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041642">
        <property type="entry name" value="KstR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17925">
        <property type="entry name" value="TetR_C_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="26"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC58998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="22710" checksum="BD3AF1F78F492806" modified="2016-01-20" version="1">MFTPGGHSVSIANSATSEDLGSAAQRERRKRILDATYELAKSGGFDAVQMRAVAEQADVALGTLYRYFPSKIHLLVSALGRQFDEASVRLNDREIPGDTQADRVLYVLKRMARGMQGDPKLTEALTRAFMFADSSVANEIHVVGMAMTSIVTHAMHGGVPAEGALTDQDVAVARVLGDVWLSALVAWVTGRSTAAETAAHMETAVHLILRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ70</accession>
    <name>A0A0Q8VQ70_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00650</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896764.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59576">
        <property type="protein sequence ID" value="KRC59576"/>
        <property type="gene ID" value="ASE19_00650"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="366" mass="38615" checksum="5D6DBCCD8DD7A28A" modified="2016-01-20" version="1">MISFVWSPHEPLPAGTGGSENYTIGQVRELNRRGVPAQVVTVGLGTDDGRAEFVDIPFVALARVADIGLLADPVVFVSEAPAVLTREPAYQILHVPPPLRSRERAAVAAATRDRTLIATSHFAARLWASFLDVDVPTIQVVHPFAEPDFAAAARPPRAPGTTRVLYAGRLTPEKGVYTLLAALHSDLVAGDPSISYTVTLAGADRPQGRIIHALLAAHPGVRVVPARRTPAAMAALMAEHDVVVMPSNSQYWHETFGIVSIEAQHTGCRVVASDDGGLPETGCGGLILVAPDNAEALAAGIRQAVRAGPLPAALRREAGECFTVAQSVDALLAVLTGPRPLPPAIVVRQLEEMMQLPAAPEPLVLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQC9</accession>
    <name>A0A0Q8VQC9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896825.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59515">
        <property type="protein sequence ID" value="KRC59515"/>
        <property type="gene ID" value="ASE19_00290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1249244at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041497">
        <property type="entry name" value="Thump-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18096">
        <property type="entry name" value="Thump_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thump_like" evidence="1">
        <location>
            <begin position="318"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="391" mass="40916" checksum="16318BECD9A32174" modified="2016-01-20" version="1">MDLETFRWLLTDDGQALLAEATTQVASGASPLATGSALRRTTTGERAAAALTQVELRARAVAKFGDLAERMYFTPDALEQATRQRVANHRAGRAVAFGTETLVDLGCGIGGDLVAAARAGIICAGVDLDPVRVAIAEANLAALGLPGAVQVADATTVAHDAFDLAYADPARRTGAGRSFRVDDWTPPWSWVEGLLTRDACVKVAPGIPHDLVPAGVEAEWVSDAGEVKEAALWAGRTATVARRATVIGEGGLATLTDEDDPGAAAVGTRAVGAYLYEPDGAVIRAGLVTAVAAGIGGGLVDPKIAYVTADASFRTPFARGYRVLEVLPYREKQLKAALRERGIGRLTIKKRGVDVVPEQLRKRLALSGDNEATVVLTRVDGEGMALLVEPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQF5</accession>
    <name>A0A0Q8VQF5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glutamate ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_01150</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896679.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59662">
        <property type="protein sequence ID" value="KRC59662"/>
        <property type="gene ID" value="ASE19_01150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="685252at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360296" evidence="2">
        <location>
            <begin position="18"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="3">
        <location>
            <begin position="59"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="296" mass="30792" checksum="9F3ACE2C48235EE9" modified="2016-01-20" version="1">MRLRSALAATTAGIAIAAGLAACGDAGSDDEGRDVDAKSDCDGKFAEGSRMAELADAGTINVGHKTDQPGVGFQGATDDVPKGFDIEIAKLLIADLCIDPASDKVNWEETISDNREPYLESGKVDVVLASYSITDDRQKVVGQAGPYMVTGQQLLVKSDSKIAGVDDVKGKEVCSVTGSTSLETIKAKGAKGVGADSYSECAEKVLDGTYEAMTTDGTILAGLAAQNEGELKVVGDQFSTENIGVGYGKDHPEMCEWIDGVLEDAFADGSWAEAFKLTLGPSGVQTPEPPTLQPCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQF8</accession>
    <name>A0A0Q8VQF8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00075</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59478">
        <property type="protein sequence ID" value="KRC59478"/>
        <property type="gene ID" value="ASE19_00075"/>
    </dbReference>
    <dbReference type="OrthoDB" id="685227at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="413" mass="45410" checksum="AD4FDCB80DB97C21" modified="2016-01-20" version="1">MDELLERRRAALSAWTTFVEDGDRAAPRVRPEIRDSWERSGASVARDVGHAPLADESETRSFWQGSPLQVAVERVEEELRRTAEDGDLVLAVTDPDTRVLWTYGGRVMRRKAESVNFVMGGRWDDRSVGTNALDLANRLDRPAMVFSAEHYAPIVHNWVCWAAPLHDPVSGAKLGVLDISTTWERTHPIGLATARVLARLVEQALPRTQQYVREAEPGDELVEPGLVLSLLGTAEAHVDGRRLLLNRRQTEILALLALHPDGLSLDQLHAMLYGDHAVTFSTLKAEVSHLRQALAGQLASRPYRLLMPIATDVDHVLGLLRRGEVAHAVEAYGGDLLPGTESPALVEMGEYVAVAVREALLADPQPDAVLDYIERAPYDTAVLEACLLRLDAEGRAHHSAVPLLKARLAIADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQF9</accession>
    <name>A0A0Q8VQF9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892642.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56625">
        <property type="protein sequence ID" value="KRC56625"/>
        <property type="gene ID" value="ASE19_01975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1840129at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="102"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="334" mass="33867" checksum="CAFE615A7B52AE58" modified="2016-01-20" version="1">MTRWVADPGIGWRILLTATLPEPAGLAERLGAVSAQQAWPPPPAVRRSDDLATLRAGLVDAHPAPLLVGSTGDQLVLSAHHSAVDGLGLLTLLERLGAGEVRSGARGVGSRPTSGSAARTTTRRLREALLHPPARVTPARAAEDPTAPGDVLVECTVPGSHRTAALVDAAARAVVARERARGRAAEHVAIAVGAVREQAGAADGPVADRSVLLRLTDVERLDAAGIATALAQAPVQTPPSTAAGGHPLVAKATGAALRALAPRLGSTLLVSHLGEVMAPGVRALSFHPVTAGGTGLSLGAVGLDGATVLTLRGRAAQWNDNGLEQLLEAVVSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQP1</accession>
    <name>A0A0Q8VQP1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896871.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59471">
        <property type="protein sequence ID" value="KRC59471"/>
        <property type="gene ID" value="ASE19_00030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1186478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="27700" checksum="FBFD163314216178" modified="2016-01-20" version="1">MTDLDRYGPWAVIAGGSEGVGAEFARELAVSGINLVLVARKPGPLEETAQRMRELGVEVRTVATDLTSPAATGEITAATADVEVGLLVYNAGANTHGRAFTRGTLDGFGSVIDLNITAMLALVHHYAVPLRDRGRGGILLVGSLAGYVGTSTEGVYGGVKAFGRIFAEGLWAELREHGVDVLELVLGVTRTPAMERAGLNFDVPGLHVSEPADVAREGLAALPNGPVHVVSGNEKVVEMRSTADRARLVAGTEKVMRMLVPHDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQR1</accession>
    <name>A0A0Q8VQR1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cysteine desulfurase</fullName>
            <ecNumber evidence="4">2.8.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_02805</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[sulfur carrier]-H + L-cysteine = [sulfur carrier]-SH + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:43892"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="EC" id="2.8.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.7" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893072.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56765">
        <property type="protein sequence ID" value="KRC56765"/>
        <property type="gene ID" value="ASE19_02805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="839689at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031071">
        <property type="term" value="F:cysteine desulfurase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044571">
        <property type="term" value="P:[2Fe-2S] cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010240">
        <property type="entry name" value="Cys_deSase_IscS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016454">
        <property type="entry name" value="Cysteine_dSase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11601:SF34">
        <property type="entry name" value="PTHR11601:SF34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005572">
        <property type="entry name" value="NifS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_5" evidence="8">
        <location>
            <begin position="7"/>
            <end position="354"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="372" mass="38239" checksum="A02CCB2033310597" modified="2016-01-20" version="1">MSSTPEVYLDSASAERLHPAARETLLAALERGYADPRRLHGPGRDARLIVDNARAVVAECLGVAPDEVGFTSSGTEAVHRGLLGLTAATGRYGIVHSAVEHSSVLHAAQWRDSPAHVSVAVDTLGHVDLAAMAAAAREPGVGAVALQAANQEVGTLQRVDELDLPAGVPLLVDAAAAFGHVPLPRRWDALAASAHKWGGPAGVGVLAVRRGTRWTTPFPGDDGLDQPGFPNVPAALAAAAALQAVVAEQAEVGARLSVLVDRIRSAAAALPDVEVVGDPAHRLPHLVTFSALYVSGDEIVNELARRGFGVASGSACTASTLEPSHVLAAMGALTHGNVRVSLSRDTSGEQVDAFCAALGEVVTEIRSRAGVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQT9</accession>
    <name>A0A0Q8VQT9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ferredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_01675</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896585.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59754">
        <property type="protein sequence ID" value="KRC59754"/>
        <property type="gene ID" value="ASE19_01675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1873445at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001080">
        <property type="entry name" value="3Fe4S_ferredoxin"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00352">
        <property type="entry name" value="3FE4SFRDOXIN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="2 4" id="KW-0408">Iron</keyword>
    <keyword evidence="3 4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU368020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="64" mass="6897" checksum="E5472A70560D3329" modified="2016-01-20" version="1">MKITVDTNLCEVHGDCVVVAPDFFDIGEDDEVVQVLDAEPGEEHRATVVQAAKMCPVAAIRIEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQU9</accession>
    <name>A0A0Q8VQU9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896569.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59770">
        <property type="protein sequence ID" value="KRC59770"/>
        <property type="gene ID" value="ASE19_01765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1282004at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="25"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="268" mass="28756" checksum="1277E8D299AC744D" modified="2016-01-20" version="1">MTMVEVEPGVHVFAQDLGPKDAPAVVLVPGFGMTHEAWDRQVGVLTDAGHRIVAIDQRGHGRSDKPLTGYDVARLSDDLLVVLDALAVETCALVGWSFGGQVCFRTAAAAPDRVERLVLVGSNAVRASRSDAFPFGAPAEPTIAAMVELELRDRFAARRTTIRSGFGTEPSPAVVDWMTNQSLQMPSWASVACYHSMLGTDLVADIPAVKQPVLQVIGADDPVHSAKGAHWLSERLADTRLAVIPDCGHYPMFEAPAALDQHLLDFLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR08</accession>
    <name>A0A0Q8VR08_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03560</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892910.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56893">
        <property type="protein sequence ID" value="KRC56893"/>
        <property type="gene ID" value="ASE19_03560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="53"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="456"/>
            <end position="529"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="540" mass="57624" checksum="0A54D5996191AA78" modified="2016-01-20" version="1">MNAVLQRLRTQLWVLKVLVSTRMLALMSPAKYFRLVRILRQQGTNATTSFAFAAVRRPHGTALVDERGSLTWQQLQDRSAALASGLLAVTDGPVETVAILCRNHRGFVDALLANSRLGGSALLLNTGFSGPQLADVMEREGARVLLYDEEFAGVVADARDRIDGLVEVLGWTDAPVPTGVLSIEGLIAAHAGQVPPRPATAGRVVLLTSGTTGTPKGARRSGGGADELAGMLEKIPWRGEETAVVVAPMFHAWGFGQLVIAATMTTTVVTRRKFDPEATLALVDEHGATGLSVVPVMLERIMDLPEPVLDRYSLRSLRFVSASGSRMKPQSVVAFMDRFGDVVHNSYNATEAGQISVAQPADLRHAPDTAGRPVRGTLLRVVDDSGRDVGADVVGRILVRGASPFDGYTAGAEKDHLDGYMVSGDVGRLDSAGRLYVVGRDDDMIVSGGENVYPIEVEKVLGGHPAVREVVVVGVDDEAFGQRLAAYVALHGEVSTDELKAHVRDQLAGYKVPRDVVVLDALPRNASGKIMVRDLPGIAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWC7</accession>
    <name>A0A0Q8VWC7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22890</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892572.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58913">
        <property type="protein sequence ID" value="KRC58913"/>
        <property type="gene ID" value="ASE19_22890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1514411at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="402" mass="43178" checksum="F0592F5BE1683C2E" modified="2016-01-20" version="1">MAACSDDLPPPTYSGNAYDDVATLMQRTLNQRAVALETHDQTRFRRSLDRTDAGLLDSEQVYFDNLGELPVGRLRFRVVEDTITPVEGTDLEGNPEYWAEVVVALRLDGFDSAAVRTRDRFLFVPNADGSRLLVGSTTDYAWETDHPGNAQPWDLGRINVEREPGVLGIFDDWTADDAPAVMDAASAGRSDVRSVLGDAGAKVDGVVVYSLQDPTFLDGLAGQTVGDPDRADGLTIAVPVDALAPGKGVASYRIFVNPRVLYEPAPVVGRLVRHELTHALLGARGRGAPLWLSEGVAEYVSVRPMAPSQRRLPARALDVGATATDLPGEAEFGGADAEAWYAVSWWVCEYVAATYGQDVLFSLLDRLAGGADQAKVLPEVLGISSSQLAQRGVALMSTAYDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXW7</accession>
    <name>A0A0Q8VXW7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LLM class F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00040</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896869.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59473">
        <property type="protein sequence ID" value="KRC59473"/>
        <property type="gene ID" value="ASE19_00040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019921">
        <property type="entry name" value="Lucif-like_OxRdtase_Rv2161c"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03619">
        <property type="entry name" value="F420_Rv2161c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="12"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="290" mass="30965" checksum="89AEEA959A4ABFF7" modified="2016-01-20" version="1">MRVGITSPIVTALPGFFDDWERTAGPADLVAIAEAADRLGLDHLTCSEHVAVPTEIAAQRGGTYWDPLATLSHLAARTHRIRLVTQVLVLGYHHPLAIAKRYGTLDLLSGGRLVLGLGVGSIEEEFELLGAEYAGRGAVADDALPALRAALSTPTPVYDGPRFPFGDVVVEPHAVQARVPFWIGGYTPRSLRRAREHGDGWVPFGLPHDRLRAMLDQAPLPDGFEVVLGAGRPVDPLGDPDRTRRALDRTLAAGATVVNVHITATSADHYVDQLAALADLAGLGTQEAQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM46</accession>
    <name>A0A0Q8UM46_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Leucine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Leucyl-tRNA synthetase</fullName>
            <shortName evidence="9">LeuRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">leuS</name>
        <name evidence="15" type="ORF">ASE19_19640</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-leucine + tRNA(Leu) = AMP + diphosphate + L-leucyl-tRNA(Leu)</text>
            <dbReference type="Rhea" id="RHEA:11688"/>
            <dbReference type="Rhea" id="RHEA-COMP:9613"/>
            <dbReference type="Rhea" id="RHEA-COMP:9622"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57427"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78494"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.4"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 10">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.4" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895868.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46092">
        <property type="protein sequence ID" value="KRC46092"/>
        <property type="gene ID" value="ASE19_19640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="32262at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004823">
        <property type="term" value="F:leucine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006429">
        <property type="term" value="P:leucyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00049_B">
        <property type="entry name" value="Leu_tRNA_synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002302">
        <property type="entry name" value="Leu-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025709">
        <property type="entry name" value="Leu_tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015413">
        <property type="entry name" value="Methionyl/Leucyl_tRNA_Synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43740">
        <property type="entry name" value="PTHR43740"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13603">
        <property type="entry name" value="tRNA-synt_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09334">
        <property type="entry name" value="tRNA-synt_1g"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00985">
        <property type="entry name" value="TRNASYNTHLEU"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="SSF50677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00396">
        <property type="entry name" value="leuS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA-synt_1g" evidence="13">
        <location>
            <begin position="51"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="domain" description="tRNA-synt_1_2" evidence="14">
        <location>
            <begin position="234"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="tRNA-synt_1" evidence="11">
        <location>
            <begin position="408"/>
            <end position="607"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_1" evidence="12">
        <location>
            <begin position="647"/>
            <end position="765"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="9">
        <location>
            <begin position="53"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="9">
        <location>
            <begin position="570"/>
            <end position="574"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="573"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF08264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF09334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF13603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC46092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="806" mass="88627" checksum="4CD451BFAA581316" modified="2016-01-20" version="1">MSETAASPEVHYDAHAVEEKWLPVWERLDAFRADDATVLAGDKPKFYGLTMFPYPSGDLHMGHAEVMALHDVLCRYKKLRGFEVLNPMGWDSFGLPAENAAIKNDEHPATYTYANIETQFSSFKKYGLSFDWSRRLHTSDPEYYKWTQWLFLKLREQGLAYRKNSSVNWCPNDQTVLANEQVLADGTCERCGAEVTKKELTQWYFRTTQYAQELYDSLDDLQDTWIPKVVNAQRNWIGRSEGAHVVFDIAGHDPITVFTTRPDTLVGATFMVVAADAKLAQELVAPEQAQALEDYLADVRKASDIDRLATDRPKTGVDLGVTATNPLTGEQIPVWAADYVLADYGTGAIMAVPAHDERDREFAEKFGLPIVSVYDDEQPYDKAAEVSKAIAAIEASGHGQGTVNFRLRDWLLSRQRYWGAPIPIIHCPVDGEVAVPEDQLPVELPELRGADLKPKGTSPLGAATEWVNVSCPTCGGPALRDTDTMDTFVDSSWYFFRYLSAHDSTQAFDPALAKAWGPIDFYLGGDEHAVLHLLYARFFTKALRDQGLIDWDEPFSAYLSQGKVINNGAKMSKSLGNGVALGAQLDEYGVDAVRLTLVFASPPEDNIDWADVSPAGSAKFLQRAWRLSGDVTSAPGVDLAGGDVALRKVTHKTVHEAAQLLDSYRFNVVVARTMELVNATRKAIDAGCGPADPAVREATETVAILLSLVAPYTAEEMWARLGHEPSVAQVAWPSVDPALLVEDAVTAVVQIQGKVRGRLEVSPDISEADLEAAALADPAVQKAIDGREVRKVIVRAPKLVNIVVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM74</accession>
    <name>A0A0Q8UM74_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19850</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895902.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46126">
        <property type="protein sequence ID" value="KRC46126"/>
        <property type="gene ID" value="ASE19_19850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1538300at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="1">
        <location>
            <begin position="111"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="258" mass="28161" checksum="864C1D6B9B5A2B47" modified="2016-01-20" version="1">MSEQPEISHATVDDGVARLTWSSDLTERGWQAAVDVVRRQVAEALTDHDRVEVKVGIDDAEAQRIATWSGLRREGVQRGRTGDVVVYARLVDDVPVHEPGGFRALLNSFLPRKRGIAQMLVRDADGPEARVLMCQLTYKADWDLPGGVVEVGESPLVAVSREVEEELALEIPAGSLLLTDWLPPWGGWDDALCLVFDGGVRPASIIDQVVPQAREIRTAEFLTLAEVDERAADFTARRVRAALASLAGEGPAYSESGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMG6</accession>
    <name>A0A0Q8UMG6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">3-isopropylmalate dehydratase small subunit</fullName>
            <ecNumber evidence="10">4.2.1.33</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Alpha-IPM isomerase</fullName>
            <shortName evidence="10">IPMI</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Isopropylmalate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">leuD</name>
        <name evidence="12" type="ORF">ASE19_20275</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 10">Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>(2R,3S)-3-isopropylmalate = (2S)-2-isopropylmalate</text>
            <dbReference type="Rhea" id="RHEA:32287"/>
            <dbReference type="ChEBI" id="CHEBI:1178"/>
            <dbReference type="ChEBI" id="CHEBI:35121"/>
            <dbReference type="EC" id="4.2.1.33"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 2/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 10">Heterodimer of LeuC and LeuD.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the LeuD family. LeuD type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.33" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895973.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46200">
        <property type="protein sequence ID" value="KRC46200"/>
        <property type="gene ID" value="ASE19_20275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1384217at2"/>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00071"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009316">
        <property type="term" value="C:3-isopropylmalate dehydratase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003861">
        <property type="term" value="F:3-isopropylmalate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01577">
        <property type="entry name" value="IPMI_Swivel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.19.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01031">
        <property type="entry name" value="LeuD_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004431">
        <property type="entry name" value="3-IsopropMal_deHydase_ssu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015928">
        <property type="entry name" value="Aconitase/3IPM_dehydase_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000573">
        <property type="entry name" value="AconitaseA/IPMdHydase_ssu_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033940">
        <property type="entry name" value="IPMI_Swivel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00694">
        <property type="entry name" value="Aconitase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00171">
        <property type="entry name" value="leuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="12" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 10" id="KW-0432">Leucine biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aconitase_C" evidence="11">
        <location>
            <begin position="1"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC46200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="197" mass="21731" checksum="D55BA52922DDB5E8" modified="2016-01-20" version="1">MEKFTSHTGTALPLRRSNVDTDQIIPAVYLKRVTRTGFEDGLFAAWRNDPEFVANKPEYQGVSILVAGPDFGTGSSREHAVWALMDYGFKVVLSSRFADIFRGNSGKAGLLSVPVEQDVIEQLWAAIEADPTTQITVDLEARTVTCGDLVAPFQIDDYTRHRLLNGLDDIGITLGNEADIAAYEATRPRFKPVTQRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN11</accession>
    <name>A0A0Q8UN11_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21335</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896147.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46376">
        <property type="protein sequence ID" value="KRC46376"/>
        <property type="gene ID" value="ASE19_21335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359234" evidence="1">
        <location>
            <begin position="20"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="39"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="117"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="326" mass="33971" checksum="F5F75665A1AFC2A9" modified="2016-01-20" version="1">MTGIRSALAALVLAAGATAAGCGLSLEDVPLPSLVDGPTYPLTVEFEDALNLPVDAPVKLDGATVGQVTSVDAGEYVAEVELALSTTVELRDTSRAEIRLTSPMGTAFVQLFPGTSGEVLAAGDTLPTAATGSAPDVTDLLSSLSTVVTGGSFSDISTIITQLNTALTGNAGDVRRLLARLDTAVTDLNADFPRVDRLTAALDQLTTRLAGDLPEVTRSLTDLTDLVTSFDRQRADFVNAMVSLQRFDAVATPITRAVRDDMIAQLRDMEPVLRTLLDGRKDIDGVMRGLIAFAGGSDSAAPGDFANFDLTFLLDPKALGDTGDGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNE1</accession>
    <name>A0A0Q8UNE1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22090</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896278.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46508">
        <property type="protein sequence ID" value="KRC46508"/>
        <property type="gene ID" value="ASE19_22090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1920576at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="172" mass="19182" checksum="4477A0D08980A739" modified="2016-01-20" version="1">MPWPADLAPLDLKQPDQRSCGAASVVAARVVLTDWRPGDAAREILDEHRLLTSSRSPRDRFQVPWPRRLGTPPWAVANALRTLTGQRIATVNARPRPVIGYEVLRENLATRPVAVYVGSRWLPRHVVLALGTVGDAVEVFDPAAGATVTLGRARWAEHRLGFGRWDHFWFVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNI4</accession>
    <name>A0A0Q8UNI4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidase_M23 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22365</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46554">
        <property type="protein sequence ID" value="KRC46554"/>
        <property type="gene ID" value="ASE19_22365"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011055">
        <property type="entry name" value="Dup_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016047">
        <property type="entry name" value="Peptidase_M23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01551">
        <property type="entry name" value="Peptidase_M23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51261">
        <property type="entry name" value="SSF51261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M23" evidence="1">
        <location>
            <begin position="188"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="294" mass="30680" checksum="2BA6AB2108C37918" modified="2016-01-20" version="1">MPVAIGLDRAPTVELPALRDIPLFDPLVDSSTSQLRAIQPAGKRRAVRHAGSRGPLFKGLPTLPVAVGVATLAVAVGGAVVSADPQLAANADRVTASNAMTGSFGNGSVSDRVETLSRDSDRDALQQGGGDLKDAVTKMDAERNSALDSLAKAAEKEAAEIALNRWTLPLKSYRLTATFGEYGLWSSYHTGLDFAAPVGTPIYAVTNGTVTSAQFDGAYGNKTVLTLDDGTELWFCHQTAFNVSPGDKVRTGQLIGYVGATGHVTGPHMHLEVRPGGGDPVDPDAALRQHGVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNI7</accession>
    <name>A0A0Q8UNI7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="6">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_22370</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the helicase family. UvrD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896323.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46555">
        <property type="protein sequence ID" value="KRC46555"/>
        <property type="gene ID" value="ASE19_22370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="137860at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006268">
        <property type="term" value="P:DNA unwinding involved in DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005751">
        <property type="entry name" value="ATP-dep_DNA_helicase_PcrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013986">
        <property type="entry name" value="DExx_box_DNA_helicase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014017">
        <property type="entry name" value="DNA_helicase_UvrD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000212">
        <property type="entry name" value="DNA_helicase_UvrD/REP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014016">
        <property type="entry name" value="UvrD-like_ATP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070">
        <property type="entry name" value="PTHR11070"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00580">
        <property type="entry name" value="UvrD-helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13361">
        <property type="entry name" value="UvrD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01073">
        <property type="entry name" value="pcrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51198">
        <property type="entry name" value="UVRD_HELICASE_ATP_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51217">
        <property type="entry name" value="UVRD_HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 6 10" id="KW-0347">Helicase</keyword>
    <keyword evidence="5 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UvrD-like helicase ATP-binding" evidence="8">
        <location>
            <begin position="18"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="domain" description="UvrD-like helicase C-terminal" evidence="9">
        <location>
            <begin position="320"/>
            <end position="622"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="712"/>
            <end position="766"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="39"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU364053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="815" mass="90342" checksum="F182FCB755AF5D52" modified="2016-01-20" version="1">MSETSAAPSALTAETLLEGLNDPQREAVKHEGSPLLVVAGAGSGKTRVLTRRIAWLIAVRKAHPGSILAITFTNKAAAEMKERVADLVGNRARIMWVSTFHSACVRILRKEVEHLGYERLKSNFSIYDAQDQKRLISLVCNDLELDPRRYQPGPVLHWISNQKNELRDPDEVAAEARNSIDQTYAAAYKAYQRRLREANAFDFDDLIMETVRLFQLKPEIRETYRRRFRHLLVDEYQDTNHAQYALIHQLSGQDLEEHDPTTLDGVPADRVPPAELMVVGDADQSIYAFRGADIRNIMDFEKDFPDARTVLLEQNYRSTQTILSAANAVIERNESRKPKRLWSDAGDGEKIVGYVADDEHDEARFVSGEIDKLTDAGDLKPSDVAVFYRTNAQSRVFEEIFIRTGMPYKVVGGVRFYERREIRDALAYLRMLVNPDDQVSLRRILNTPKRGIGDRAVLAVNLFAERERITFWEALQRAGDAPGLATRSQTNIESFVAMVQDLQQMVAAGERPDVILETALDRSGYLVSLEQSDDPQDETRIENLGELVAVAREFAEDPVAGPSADPADVDAGTVEPGLSDFLERVALVADSDQIPDAPDPDDPDAPADNGVVTLMTLHTAKGLEFPVVFLTGMEDGVFPHSRALGDRPELEEERRLAYVGITRARQRLYVSRAVVRSAWGAPAHNPGSRFLTELPIDLVDWRRTEADQTRWSRPAYGSAGRYDDSGPSGNRLGAPTAAGRRNFSSAAARADAASKSKPSRAIPVLAPGDKVTHDSFGLGSVVSVEGAGDKSVASIDFGSDGVKRLLLRYAPVEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UTV2</accession>
    <name>A0A0Q8UTV2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Acyl-CoA thioesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_20845</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the acyl coenzyme A hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896062.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46291">
        <property type="protein sequence ID" value="KRC46291"/>
        <property type="gene ID" value="ASE19_20845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1712258at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016790">
        <property type="term" value="F:thiolester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040170">
        <property type="entry name" value="Cytosol_ACT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033120">
        <property type="entry name" value="HOTDOG_ACOT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11049">
        <property type="entry name" value="PTHR11049"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51770">
        <property type="entry name" value="HOTDOG_ACOT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HotDog ACOT-type" evidence="4">
        <location>
            <begin position="11"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="167" mass="18148" checksum="3A69A3D23D14C33C" modified="2016-01-20" version="1">MSEIVAARTPSYSRIELATVTSRAQANLLGNIHGGEVLKLADSTAGVVAQRHSGGPAVTAALDEMAFLEPVRVGDIVRTFGQINWVGSSSMEIGVRIETQPWDATTELRHVGSAYFVFVAIDTAGAARPVPALDPESEDDRRRMQEAEIRRAHRLAKRQEIEAVRLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UTX8</accession>
    <name>A0A0Q8UTX8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">DNA-binding transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_20935</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896078.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46307">
        <property type="protein sequence ID" value="KRC46307"/>
        <property type="gene ID" value="ASE19_20935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1654295at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001034">
        <property type="entry name" value="DeoR_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013196">
        <property type="entry name" value="HTH_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018356">
        <property type="entry name" value="Tscrpt_reg_HTH_DeoR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026881">
        <property type="entry name" value="WYL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08279">
        <property type="entry name" value="HTH_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13280">
        <property type="entry name" value="WYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00894">
        <property type="entry name" value="HTH_DEOR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51000">
        <property type="entry name" value="HTH_DEOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH deoR-type" evidence="4">
        <location>
            <begin position="4"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="325" mass="35206" checksum="749E93AE2AB08667" modified="2016-01-20" version="1">MKGTSGRLLELLGLLQARVEWTAPELAARLGVTDRTVRNDVTRLRELGYPVDGVRGRAGHYRLGAGAKLPPLLLDDEEAVAVAVGLRTLTGVSGFEESGSRALTKLEHVLPDRLRRRVTALRDATEAGPVNTDSNVEDPEVDAGVLAEIADAIRDHRGLRAFFGDGADDERERIEIEPYRLVAWQRRWFVVGRSPATGEWAPYRVDWLTLRLPGGRGFTPAPLPGDLTELVVREVARTGWSVHARLVIDAPAEEVLSRINPAVGVVESRPDGRSVLVTGGDSLEIVAVWIGMLGLDFTVESPAALVDRLRVLAQRYAGAVVGSAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUE9</accession>
    <name>A0A0Q8UUE9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Glyco_hydro_114 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17895</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893196.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48794">
        <property type="protein sequence ID" value="KRC48794"/>
        <property type="gene ID" value="ASE19_17895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1327691at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004352">
        <property type="entry name" value="GH114_TIM-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03537">
        <property type="entry name" value="Glyco_hydro_114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359439" description="Glyco_hydro_114 domain-containing protein" evidence="1">
        <location>
            <begin position="25"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_114" evidence="2">
        <location>
            <begin position="27"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="246" mass="27494" checksum="6C13F6FD64CD1FFC" modified="2016-01-20" version="1">MISALVLSVVLALAPTVTPPPGGGDVDYQLGGAVRPDPRVEIVVRDRNAAPARGRYNVCYVNGFQTQPDEARFWRQRWSLVLKRGGRPVLDEAWGEWLLDIRTPTKRAALARIVGRWIDGCARNGYDAVELDNLDSWSRSHGLVTRAQAKAFARLLVRRAHADGLAVGQKNWPELDGTTLGFDFAVAEECGRYAECGRYRASYGNRVLVIEYRRTDFQRACARWGAQLGIVLRDRALSPRGVRSWC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUJ9</accession>
    <name>A0A0Q8UUJ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893277.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48876">
        <property type="protein sequence ID" value="KRC48876"/>
        <property type="gene ID" value="ASE19_18330"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359442" evidence="1">
        <location>
            <begin position="24"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="274" mass="28849" checksum="A98C14FFCCCB4275" modified="2016-01-20" version="1">MSTRITVAVLLPLVLTSGCGAPAHPPEGSGAQTVDRDDVELRDYDIAFAFDDPVVPGDVVPGAGSVGTLPLRASVVTLGGGELTWTPDLDEGWAVRTPAARADGAIRAAAIVVWPDAAGHAQLDPGRRTVRLQADLRADAPAPPRPGDDGDNVVQWGRFGDPAQVKLQLDHGTPSCRAVGSDRAVLVAADRKVVPDRWYRLTCSVRTGEVRLQLLDLERGGEPSEWSQPIGPGAMVFGPVPLSIGAKVGASGQLDRRSVDQFNGVIDRVVVDVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUK1</accession>
    <name>A0A0Q8UUK1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sulfotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18295</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893270.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48869">
        <property type="protein sequence ID" value="KRC48869"/>
        <property type="gene ID" value="ASE19_18295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1555988at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037359">
        <property type="entry name" value="NST/OST"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000863">
        <property type="entry name" value="Sulfotransferase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10605">
        <property type="entry name" value="PTHR10605"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00685">
        <property type="entry name" value="Sulfotransfer_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Sulfotransfer_1" evidence="2">
        <location>
            <begin position="41"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="33043" checksum="E17B504ED2E189A6" modified="2016-01-20" version="1">MIRTVAGRVRRTLPPPARRAVRAALLGWGWVTADLRASPGLIVVGAQRAGTTTLFRLLSEHPGLIRPSVDKGTGYFDDGYRHGRRWYRAHFPLRRPGRWSRIAFECSGYYLFHPLAAQRIAAELPDCQVVVMVRDPVARAHSAHRHELARGFETLRFEEAVEREHERTAGLADWLVADPTGVSFAHRHHSYLARGEYAAQVDRFVTALGRERVHVVDADELFADPIGVYVDLQRQLGLEVHRPREVKRWNERPGEPLPDPLTARLRSHFDDHDTALGVLLGHPPSWRKEQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUQ1</accession>
    <name>A0A0Q8UUQ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18720</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48940">
        <property type="protein sequence ID" value="KRC48940"/>
        <property type="gene ID" value="ASE19_18720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="22821at85009"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010916">
        <property type="entry name" value="TonB_box_CS"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00430">
        <property type="entry name" value="TONB_DEPENDENT_REC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="370" mass="39008" checksum="FBDB15715E4AC022" modified="2016-01-20" version="1">MMTDQLEQDLTALFAQRAAEAEVPPMPPELFAREDRRPGRRVAIALVAAAAAAAVAIPVGLSFRNGDDVQPAPAPAPTDPGVSRGLELPYLIDGRLHVGELVLPTTADSLVVTGTQVLLSTGNQAGGRPTWSRLAGDALEPMPYLDGAYNVTTAYDGSVVAAPVVTGTTTSVRVWDTTTGAVVDTVALAQAPSPEEPWLWGFDDRGRLFWQDGTTQRMRTAAGEVVELETGDLHFGGITPGAVVLLQGQSSRTAQLAEVADDGTVRDTSEVPVSTAAAWRDHDTMAYEAVASGLVNIYDVATGEQQPVDVGDGALMVAGWSGDELVVVQQVPRGSRVVAYDPETREQRTVFEFGLDQPFPFASLDGTGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUS1</accession>
    <name>A0A0Q8UUS1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_18715</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893341.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48939">
        <property type="protein sequence ID" value="KRC48939"/>
        <property type="gene ID" value="ASE19_18715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014325">
        <property type="entry name" value="RNA_pol_sigma-E_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02983">
        <property type="entry name" value="SigE-fam_strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="5">
        <location>
            <begin position="112"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC48939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="171" mass="19110" checksum="E65C32F2A4C8131F" modified="2016-01-20" version="1">MTTSDPHWRSFEDYATARWAALYRTAHLLTGDPAAAEDLLQSTLVKVMAQWTKVRRADAPDAYVRKMLLNELLGERRKAGRRAQKAHLVPVPDPVTDPAATSPERLDLWDRVQLLPPRQRAVLVLRYYEDLSEAEIAEVLGVSAGTVKSQASHALRALRAATAQNRTEEVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUS6</accession>
    <name>A0A0Q8UUS6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA-(apurinic or apyrimidinic site) lyase</fullName>
            <ecNumber evidence="2">4.2.99.18</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">ASE19_18705</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <reference evidence="16 17" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FPG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.99.18" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893340.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48938">
        <property type="protein sequence ID" value="KRC48938"/>
        <property type="gene ID" value="ASE19_18705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1162346at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140078">
        <property type="term" value="F:class I DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019104">
        <property type="term" value="F:DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08971">
        <property type="entry name" value="AcNei2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015886">
        <property type="entry name" value="DNA_glyclase/AP_lyase_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012319">
        <property type="entry name" value="FPG_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035937">
        <property type="entry name" value="MutM-like_N-ter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044090">
        <property type="entry name" value="Nei2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010979">
        <property type="entry name" value="Ribosomal_S13-like_H2TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000214">
        <property type="entry name" value="Znf_DNA_glyclase/AP_lyase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01149">
        <property type="entry name" value="Fapy_DNA_glyco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06831">
        <property type="entry name" value="H2TH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00898">
        <property type="entry name" value="Fapy_DNA_glyco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01232">
        <property type="entry name" value="H2TH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46946">
        <property type="entry name" value="SSF46946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81624">
        <property type="entry name" value="SSF81624"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51068">
        <property type="entry name" value="FPG_CAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51066">
        <property type="entry name" value="ZF_FPG_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0227">DNA damage</keyword>
    <keyword evidence="9" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="12" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <keyword evidence="5 13" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="FPG_CAT" evidence="15">
        <location>
            <begin position="2"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="domain" description="FPG-type" evidence="14">
        <location>
            <begin position="225"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012720"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS51068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KRC48938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="265" mass="28753" checksum="26205555937B3836" modified="2016-01-20" version="1">MPEGDAVRRTADRLDRALAGRTLTRTDFRVPQLATTDLAGATVERTATHGKHLLTRVVGAGGARLTLHTHLKMEGSWRVVTRGERPPGPAADVRVVLETDHVIAAGLRLGLVELLPTAEEHTVVGHLGPDLLGPWTDDDRAEAVARLTARPDRVLGEALLDQTVVAGIGTIWLAESCFVHGVCPVGPVSGVRDPARLLSRARQMLQAAMRNGRPVTTGDRRNPLWAYGRNRQPCLRCRTPLLSGEVGPAGRERTTYWCPHCQPLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUX5</accession>
    <name>A0A0Q8UUX5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Threonine--tRNA ligase</fullName>
            <ecNumber evidence="10">6.1.1.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Threonyl-tRNA synthetase</fullName>
            <shortName evidence="10">ThrRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10 13" type="primary">thrS</name>
        <name evidence="13" type="ORF">ASE19_19000</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP + L-threonine + tRNA(Thr) = AMP + diphosphate + H(+) + L-threonyl-tRNA(Thr)</text>
            <dbReference type="Rhea" id="RHEA:24624"/>
            <dbReference type="Rhea" id="RHEA-COMP:9670"/>
            <dbReference type="Rhea" id="RHEA-COMP:9704"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78534"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="10">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.3" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893386.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48984">
        <property type="protein sequence ID" value="KRC48984"/>
        <property type="gene ID" value="ASE19_19000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="900765at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004829">
        <property type="term" value="F:threonine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006435">
        <property type="term" value="P:threonyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00771">
        <property type="entry name" value="ThrRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00184">
        <property type="entry name" value="Thr_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004095">
        <property type="entry name" value="TGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002320">
        <property type="entry name" value="Thr-tRNA-ligase_IIa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018163">
        <property type="entry name" value="Thr/Ala-tRNA-synth_IIc_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033728">
        <property type="entry name" value="ThrRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012947">
        <property type="entry name" value="tRNA_SAD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11451">
        <property type="entry name" value="PTHR11451"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07973">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01047">
        <property type="entry name" value="TRNASYNTHTHR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00863">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55186">
        <property type="entry name" value="SSF55186"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00418">
        <property type="entry name" value="thrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51880">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 10 13" id="KW-0436">Ligase</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 10" id="KW-0820">tRNA-binding</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="TGS" evidence="12">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="11">
        <location>
            <begin position="290"/>
            <end position="556"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="352"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="403"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="533"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC48984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="660" mass="73778" checksum="CA093B7B853D707A" modified="2016-01-20" version="1">MSDIKVVVLTPDGRKESTVTEGTKAWELFRDDADVIAARVGDQLKDLSYPLADGDEVEGVLIGSPDGLDILRHSTAHVLAQAVQQLFPEAKLGIGPPIDNGFYYDFDVPVPFVPEDLVKLETAMRKIIKENQRFDRRVTTDEDALVELADEPYKVELIGLKGSAADAAEGASAEVGAGELTIYDNLNRNGEVAWKDLCRGPHLPTTKRIPAFKLMRSAAAYWRGDEKNKQLQRIYGTAWPSKEELEEHLHRLEEAERRDHRKLGRELDLFSFPDEIGSGLPVFHPKGGVVKREMEDYVRRRHIEEGFSYVGTPHISKDGLFHTSGHLPYYADTMFPPMEFEGANYQLKAMNCPMHNLIFSSRGRSYRELPLRLFEFGSVYRYEKSGVIHGLTRVRGFAQDDSHSYCTPEQAPAEVKHLLGFMLGVLKDFGLDDFYLELSTRDDAKPDKFVGSDEDWATATKVLEDVAAETGLELVPDPGGAAFYGPKISVQAKDAIGRTWQMGTVQYDFNQPARFGLEYTSPDGSKQQPVMIHSAKFGSIERFLGVLVEHYAGAFPPWLAPVQVVGIPVADAFTDYLYEVTGQLKARGIRVEVDESDDRFQKKIRNAQLQKIPFMLIAGGEDVEKGAVSFRYRDGRQDNGVPIAEAIERVVAAVTSREQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV53</accession>
    <name>A0A0Q8UV53_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18360</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893280.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48879">
        <property type="protein sequence ID" value="KRC48879"/>
        <property type="gene ID" value="ASE19_18360"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1196738at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="49"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="288" mass="31283" checksum="EC748179EDF4C06B" modified="2016-01-20" version="1">MSHPTPGNDPVVTSYAQAPARTVNASGVSYAYRELGPKGGIPVVFFVHLAATLDNWDPHIVDAVARTRHVITFDQRGVGASTGKVPATLEEAADHAYEFITALGYDKIDVFSFSMGGMIAQDLVVKHPDLVRRLVLTGTGPRGGKDMDKVVGVTYWDILRATLTRSDPKEFLFFNRDAAGKAAGKAFVARLGERTVDRDKDISLTALRTQLKAIQKFGRSAPSDLSTVTQPTLIANGDHDRMVPTVLSEDLHRRIKGSQLVIYPNSGHGGIFQFHEKFAPVVAEFLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV71</accession>
    <name>A0A0Q8UV71_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18450</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893296.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48895">
        <property type="protein sequence ID" value="KRC48895"/>
        <property type="gene ID" value="ASE19_18450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047542at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="13"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="201" mass="22015" checksum="F6C224BB985DCCCB" modified="2016-01-20" version="1">MSTPSRPRRADAVRNRDLLLAAAQDEFAERGLEASVADIARRAGVGKGTVFRHFPTKDDLIAAIVRTHVDALDALGRDLLRARDAGPALLEFLTEAAGKQQRDLSFLLRASERNPEVLELRDRLYVTIGDLVERAKLAGAIRADVTGVDVILLMCAPGHVVDYLSDPMPHLWERYLGIVFDGLRPEGAHPLRPDPPSLSGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVI0</accession>
    <name>A0A0Q8UVI0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">3-dehydroquinate dehydratase</fullName>
            <shortName evidence="7">3-dehydroquinase</shortName>
            <ecNumber evidence="5 7">4.2.1.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Type II DHQase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">aroQ</name>
        <name evidence="11" type="ORF">ASE19_19235</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes a trans-dehydration via an enolate intermediate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>3-dehydroquinate = 3-dehydroshikimate + H2O</text>
            <dbReference type="Rhea" id="RHEA:21096"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16630"/>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
            <dbReference type="EC" id="4.2.1.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 3/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 7">Homododecamer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the type-II 3-dehydroquinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.10" evidence="5 7"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893425.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49023">
        <property type="protein sequence ID" value="KRC49023"/>
        <property type="gene ID" value="ASE19_19235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1872106at2"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003855">
        <property type="term" value="F:3-dehydroquinate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00466">
        <property type="entry name" value="DHQase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.9100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00169">
        <property type="entry name" value="AroQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001874">
        <property type="entry name" value="DHquinase_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018509">
        <property type="entry name" value="DHquinase_II_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036441">
        <property type="entry name" value="DHquinase_II_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21272">
        <property type="entry name" value="PTHR21272"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01220">
        <property type="entry name" value="DHquinase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001399">
        <property type="entry name" value="DHquinase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52304">
        <property type="entry name" value="SSF52304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01029">
        <property type="entry name" value="DEHYDROQUINASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="6 7 11" id="KW-0456">Lyase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="7 9">
        <location>
            <begin position="103"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7 8">
        <location>
            <position position="25"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7 8">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="7 10">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR001399-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001399-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001399-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC49023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="145" mass="16218" checksum="14D22D2F28307122" modified="2016-01-20" version="1">MGKQEVYVLNGPNLRRLGRRQPEIYGHTTHSDLAELLSGWGTDYGLDVRFQQTNHEGEMLDWLNDAADLSWPVVLNAGAWTHYSYALYDACAQLTAPLVEVHISAPSKRPEEFRHTSVVTPHAAKVIEGEGIDGYRQALEFIAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UX93</accession>
    <name>A0A0Q8UX93_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22000</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46493">
        <property type="protein sequence ID" value="KRC46493"/>
        <property type="gene ID" value="ASE19_22000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1817663at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="136" mass="15325" checksum="1EA84FDFE812BEAD" modified="2016-01-20" version="1">MVVGVLWEIAPVPQRPDVPGDYLARLRAILGRLPECREDEAWTGVRWRVAGTTATVAHVFGGEDQLFRIVFRAELDEVMAFQHLGAPYFKSEWGTNVVGMLVDDDTDWEELAELLTESFCLQAPQRLVDLVNRPTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXQ9</accession>
    <name>A0A0Q8UXQ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_15760</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893544.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50075">
        <property type="protein sequence ID" value="KRC50075"/>
        <property type="gene ID" value="ASE19_15760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="7"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="127"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="231"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC50075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="42761" checksum="249D7D701661477B" modified="2016-01-20" version="1">MHIDLEPQQVALRDELRAYFAELVTPEIRAGLASATGEFGEAGVYKDVIRQIGRDGWLGIGWPKEYGGQARSMVEQLIFTDVAAIAGVPIPYLTLNTVGPTIMRYGSEEQKEFFLPKILAGELHFSIGYSEPGSGTDLASLQTRATLEGDEWVINGQKMWTSLIQYADWLWMACRTEPDAPRHKGLSMILVPADAPGVSYTPVHTVAGVGTSATYYSDVRVPASNLISERGGGWALMTNQLNHERVALTSAAPLVHSLQLVKDWAAETRNPDGSRVIDTEWVQIALGRAHARVEALSLINWKLAADADHGVALSPAEASATKIYGSELATEVYRALMEIVGPHAGVTGDSPGAVLAGRLERFHRSSLVMTFGGGTNEIQRDIIGYVGLGLPAAKRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYZ7</accession>
    <name>A0A0Q8UYZ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two-component system response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_21385</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896157.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46386">
        <property type="protein sequence ID" value="KRC46386"/>
        <property type="gene ID" value="ASE19_21385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="817710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="14"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="135"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="135"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="235" mass="25623" checksum="9AE536121697967A" modified="2016-01-20" version="1">MTPSAGAPYSTKGRVLVVDDDAPLAEMLGIVLGQEGFESKVCPRGDIALAEFRDYRPDLVLLDLMLPGKDGIDVCKEIRAESGVPIVMLTAKGDTVDVVVGLESGADDYVVKPFKPKELVARIRARVRRTEAVPPETLAIRDLQIDVAGHSVTRGGAEIPLTPLEFDLLLCLARRPGQVLTRQVLLEEVWGYHHAADTRLVNVHVQRLRSKVEHDPEHPEIVLTVRGVGYKAGSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ98</accession>
    <name>A0A0Q8UZ98_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19005</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893387.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48985">
        <property type="protein sequence ID" value="KRC48985"/>
        <property type="gene ID" value="ASE19_19005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="876796at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359551" evidence="2">
        <location>
            <begin position="19"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="328" mass="34082" checksum="A11567BE41C1AE71" modified="2016-01-20" version="1">MRRGAAGVVLLALLPALAACGGSDPNAGAPPRPPASSQTTASPSDDGRPAGDAGDPGDGASDLAKLAEEAARAASETATSNIAPRDGDVLGGDVSWPQCPKGMGIPEKKGLGLPMPLPSAEYVVLGLTNGPGFTPNPCLADQVQWAKDNDVLVAVYAVSSYPDAATLADEGANGPYDASTKLGQLKNVGYAQARFNIGTMAVVGLLSPIVWIDVEPVPVFEWSKDLRANAAVIEGVARGYVDAGFRIGVYSTPSLYQRVVGDFDLGGVPEWRAAGQTSKAEALHRCGDDWSIQGGRAVMGQWVEQRRDLNVTCPGIAADLGQWFHRFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZL5</accession>
    <name>A0A0Q8UZL5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_20320</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46610">
        <property type="protein sequence ID" value="KRC46610"/>
        <property type="gene ID" value="ASE19_20320"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1465483at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015919">
        <property type="entry name" value="Cadherin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011096">
        <property type="entry name" value="FTP_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027268">
        <property type="entry name" value="Peptidase_M4/M1_CTD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001570">
        <property type="entry name" value="Peptidase_M4_C_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013856">
        <property type="entry name" value="Peptidase_M4_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07504">
        <property type="entry name" value="FTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01447">
        <property type="entry name" value="Peptidase_M4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02868">
        <property type="entry name" value="Peptidase_M4_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49313">
        <property type="entry name" value="SSF49313"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359558" evidence="3">
        <location>
            <begin position="23"/>
            <end position="788"/>
        </location>
    </feature>
    <feature type="domain" description="FTP" evidence="6">
        <location>
            <begin position="78"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M4" evidence="4">
        <location>
            <begin position="204"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M4_C" evidence="5">
        <location>
            <begin position="369"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="17"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="788" mass="81247" checksum="60688620BE00CBBD" modified="2016-01-20" version="1">MATLVAASALAAAPLASPSAHADPGATATAASAASAAPRDDAHQKARRSAKALIDSRAPQLRASGGDAFVAQPVVSGGAGLQYAAYTRTWRGLPVRGGDFVVVTNRDGKILGTSVAQKRAIGKLSATPTVSAKAATSTARATLRQSVRRGAPELVVHALTTPRLAWKVRVSGLTADGDRSVRDLYVDARTGSVIESDELVHFATGTGNGHHNGPGLAIETTQASASSYTLADPNNPGVDCRIDNNTTNSVPVLAGPDNTWGDGSGTSTETGCVDTLYALQVQDRMLSQWLGRDGFNGNGGGWQARVGKDEVNAFYCPPGLSEPGYCTGTEWVRIGHNQANTEWLTNLDVVGHEYGHGVDQNTPGGHSNGNTGEFVGDVFGALTEHFANESSTYDEPDYLVGEEVNLVGDGEIRNMYNPSAKGDPNCYSSSIPNAEVHSAAGPGNHWFYLLAEGTNPAGGPTSTTCNSGGTLTGIGIQKAGKIFYNAMLMKTTSSSYLKYRTWTLTAAKNLFPGSCTEFNAVKAAWNAVSVPAQTADPTCTTAGNTVTVTNPGNRTGTVGTATSLQLTGTSSGAGQTLTWSATGLPAGLSINSGTGLVSGTPTTATTANVTVTARDTTGATGSTSFTWTISGGGTPTGNLLKNPGFESGAVDWTGTSGPITNNTGRAARTGSWKLWLGGNGSTSTENESQTVTIPATATTATLSFWVAIDTAESTSSTAYDTAKVQVVSGTTTTTLATYSNLNKSSGYVQKTFDLASYKGKTITLKFLMNEDSSLQTSFVIDDTAINVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V059</accession>
    <name>A0A0Q8V059_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893143.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48739">
        <property type="protein sequence ID" value="KRC48739"/>
        <property type="gene ID" value="ASE19_17565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2073006at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="71" mass="7468" checksum="8EA52C3AB07BC91E" modified="2016-01-20" version="1">MDDSRYGRPSRLPALLIGLPIAVLLALAGGFFTLASWGVFGYDESKSLSVVGPLMAGFGVALGWVCLRPRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0I3</accession>
    <name>A0A0Q8V0I3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADH:flavin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18380</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893284.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48883">
        <property type="protein sequence ID" value="KRC48883"/>
        <property type="gene ID" value="ASE19_18380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1033671at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="1">
        <location>
            <begin position="6"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="415" mass="44449" checksum="02D9E13CD91CAC48" modified="2016-01-20" version="1">MASLADPLDLPSGVRLPNRIGKAALSEALGDADNSPDNRIVTLYRRWAQGGYGLLVTGNIMVDRAHLGEPGNIVIEDRRALPQLTAWTKAAHDGGAVILAQLNHPGRQSNLLAVGHRPVAPSAVPLAMPGATTPRELTAAEIEDIVERFATAAAVCEEAGFDGVELHAAHGYLITQFLSPLTNLRTDEWGGSPERRMRFLIEVVRRVRSLVRPGFAVAVKLNSADFQRGGFSEDDSRAVVAALAEEAVDLIEVSGGSYEAPAMGGSEASSTREREAYFLDYARSVRREAGSIPIAVTGGFRSRAAMEAALEVGDCDLVGLARPTVTTTDAAAAILEGRTSVLTAHEIRAGMRPILGRLTDLKALDGFLNISWNTDQLHRLARGQEPDLSRGALRTATAMVRRNGRVSFTPRRGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1Q5</accession>
    <name>A0A0Q8V1Q5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15200</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896496.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51429">
        <property type="protein sequence ID" value="KRC51429"/>
        <property type="gene ID" value="ASE19_15200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="146" mass="15805" checksum="94A170E3B367275E" modified="2016-01-20" version="1">MTNVVEQSVEIDAPVSKVFAYVDDFTTTKDWMYGLTKIAPVTDQLHGVGAQYDGIMKVGVPLKARIRCTAWEQDALIELTSVKGIQTTQRWSFTDLGGDRTRVDAWVSYTLPGGPAGKAIAAAVKPVVGIAVKHTSETLVRNVLAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V359</accession>
    <name>A0A0Q8V359_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA repair protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19135</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893410.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49008">
        <property type="protein sequence ID" value="KRC49008"/>
        <property type="gene ID" value="ASE19_19135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1230240at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007139">
        <property type="entry name" value="DUF349"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03993">
        <property type="entry name" value="DUF349"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="324"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="412" mass="45768" checksum="39BA73C5B5F6BFD3" modified="2016-01-20" version="1">MTTSDWGRVDDDGTVYVKTADGERAVGQMPDATPEEALVFYTKRYDNLALEVDLLHKRVLSGVLSPEEAISSIKLVRDQIDDVNAVGDIAALGRRLDELGPVIATQRDARRAAKAQRVADAREAKDKLAEEAEKIATGRDWRNGANRLRELLDQWKQLPRIDKAADDELWKRFSSARSAYTKARKAHFAEQDERREGARAVKERLVKEAEALASSTEWGPTSGRYRDLMRDWKAAGPAPKAVDDALWQRFRGAQDTFFGARDAANAAMDTEFAANAVVKEELLVEAEAILPELASSGDVAAAKAAFRIVADKWDEAGKVPRDRIKDLEGRMRTVEQTIRRAEEDQWAKSDPEKSARADDMVSKLESAIAEAEAKLAAARERGDDKRVRDLESSLEGQRSLLDMAKKVSADFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3B7</accession>
    <name>A0A0Q8V3B7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Enoyl-CoA hydratase 2</fullName>
            <ecNumber evidence="1">4.2.1.119</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Enoyl-CoA hydratase 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_19500</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a (3R)-3-hydroxyacyl-CoA = a (2E)-enoyl-CoA + H2O</text>
            <dbReference type="Rhea" id="RHEA:26526"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57319"/>
            <dbReference type="ChEBI" id="CHEBI:58856"/>
            <dbReference type="EC" id="4.2.1.119"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.119" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893474.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49072">
        <property type="protein sequence ID" value="KRC49072"/>
        <property type="gene ID" value="ASE19_19500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="942354at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002539">
        <property type="entry name" value="MaoC-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01575">
        <property type="entry name" value="MaoC_dehydratas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC-like" evidence="5">
        <location>
            <begin position="168"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00029334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00030115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC49072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="30312" checksum="7A587B3C99254AD4" modified="2016-01-20" version="1">MPIDPSVAIGADLGARTFSWTESDVLLYHLGIGAGSRAGDNLSPAALRYTLDNAALQVLPSFGVVAPTFHDTDPPPLDLPGCDINLAQVVHGSQSISVSGALPTSGTATVRTTLTDIWDKGKAAVIWQEGVATSDATGEELWRVRSSIFVKGEGGWGGDRGSATPVEVPGRDADFVASYTVTPQQALLYRLSGDRNPLHADPDFAKTAGFPAPILHGLCSYGIVLRELTDGLLGGDAAAAAGFTARFAGVVFPGETIRVAGWRTDEGIIGSATIEGGERDGSPVLADCVLTLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3L3</accession>
    <name>A0A0Q8V3L3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidase M20 domain-containing protein 2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18085</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M20A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48829">
        <property type="protein sequence ID" value="KRC48829"/>
        <property type="gene ID" value="ASE19_18085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1015417at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016805">
        <property type="term" value="F:dipeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017439">
        <property type="entry name" value="Amidohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017144">
        <property type="entry name" value="Xaa-Arg_dipeptidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037226">
        <property type="entry name" value="Amidohydrolase_ACY1L2_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01891">
        <property type="entry name" value="amidohydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="2">
        <location>
            <begin position="167"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR037226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="376" mass="39577" checksum="4FEBC3FA61173875" modified="2016-01-20" version="1">MKEHAAATVRSDAERLIRLSEQLHAHPETGWQEHNSSRWVAESLEEAGFTVTPGHLGLETAFLATFGSGPFRLGLCAEYDALPGLGHACGHNLISAITVGAARALAPLADDAGLTIEVYGTPAEEGGGGKIELLERGAFAGLDLAMMAHPAPVDVAEAEPFAVSHSHVEYRGKAAHAAAYPEQGVNAADAFTIAQVAIGLLRQQLPPTVRVHGVMTNGGEAPNAIPALTEGRWYVRAESLAQLAETEEKVWRCFEAGALATGATLTVEPESKPYAEFRTFAPALASYRRNAEELGRVFDPGTPARRMNRASTDMGNVSQVVPAIHPYIGINSGSALNHQPEFAAHCVGGDAEKAILDAATALAWTALDVAGEATAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3U3</accession>
    <name>A0A0Q8V3U3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Isoquinoline 1-oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17830</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893187.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48785">
        <property type="protein sequence ID" value="KRC48785"/>
        <property type="gene ID" value="ASE19_17830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="337328at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012368">
        <property type="entry name" value="OxRdtase_Mopterin-bd_su_IorB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036389">
        <property type="entry name" value="IOR_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="SSF54665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ald_Xan_dh_C" evidence="1">
        <location>
            <begin position="230"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="774" mass="82435" checksum="F58E0237FF818677" modified="2016-01-20" version="1">MGNTPRRQPAASLSRRSFVGYVVGGTSLMVAADLALGAAPAHALPIPSVPQVPELYDLNDFLVHCALPTSNLIGITIAEDGDAHFALPRMEVGQGITTAMAMLVADELDLPIERVHVSLAPARKELLFNQLTGGSNTIVSMYTPVRVAAAVARKALLDAAAVQLGALVTTLTIKGGVIFDALGNSVTFGQAAADAAPTTTRKVEVRLKDASQQSLVGTPQRRIDALDAVTGRKQFAMDLDVPDALPTMVCRAPDLNGTARSVRNESAVKEMPGVTHVAIIPTGVAVRARTFGQCIDAVRALDVEWNGGTVPGMSADDVLAELRRAQLPLVVPKLGAAALDAEFVFHFRSGSALEPNCAVADVRDGSATIWGGLKSPIDTQSKVAKALGLPQDEVTVNVVQGGGSFGRKLFSDAAIEAAHASKAFSAPVKLMWHRADEPRQGRVHPMATSRIRATVLAGSVISFEQRHTSVPTDFTHGLGERITAEVAALPTGLANLGFAETIFLLTQELPYNFGVITQLLNEPKPAPDRFNTSSVRNIYSPDVATANELMVDQLAARLRKDPVAFRRTYLKSRVVRRVLDRAAELGEWGRAMPAGTAQGIAIHKEYKGATAVLVEIDCRPETVNRKVRDAVTGPRVTRATVVVDAGIVINPKGVEAQMMGGFMDGMAQALTYGNHLVDGHFLEASWDNSAYTRQWNVPLDFRCEVMESESKEPGGVGEAGVAASMAAVACAYARAAGRMPTEFPINFRAPLHFEPKSYVPPVPESPVDGLDHTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5I2</accession>
    <name>A0A0Q8V5I2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Flagellar protein export ATPase FliI</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_09265</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894556.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52618">
        <property type="protein sequence ID" value="KRC52618"/>
        <property type="gene ID" value="ASE19_09265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="875807at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030257">
        <property type="term" value="C:type III protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030254">
        <property type="term" value="P:protein secretion by the type III secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020003">
        <property type="entry name" value="ATPase_a/bsu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005714">
        <property type="entry name" value="ATPase_T3SS_FliI/YscN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040627">
        <property type="entry name" value="T3SS_ATPase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18269">
        <property type="entry name" value="T3SS_ATPase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01026">
        <property type="entry name" value="fliI_yscN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00152">
        <property type="entry name" value="ATPASE_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0966">Cell projection</keyword>
    <keyword evidence="5" id="KW-0969">Cilium</keyword>
    <keyword evidence="5" id="KW-0282">Flagellum</keyword>
    <keyword evidence="3" id="KW-0653">Protein transport</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="AAA" evidence="4">
        <location>
            <begin position="156"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="435" mass="45606" checksum="37112A9019F8D118" modified="2016-01-20" version="1">MRISSAVLDRAVDAARPLHLGTVTELVGLHLEVRGLPEAAAGDLLEVRTTAGPLLAEVAALRDGAAICLPLGTTTGVRVGDHVHTTGGPLQVRVGDALRGRVLDGLGRPVDGGPPLDGLEAVSTELSAPDALSRPRITEPLGLGVRALDALVPAGRGQRLGIMAGSGVGKSSLLSMIARGTDAEVNVIALVGERGREVREFIDGDLGPEGLARSVVVVATSDAPAVERLRAAFTATRIAEWFRDSGRDVLLMMDSLTRVAMAQREIGLSAGEPPATRGYPPSVFGLLPRLLERAGTSAHGSITGLYTVLVEGDDLQDPIGDTARSILDGHVVLSRELATAGHFPAIDVLESISRVHRAVTTLDQQGDAARLRRMLAAHRSVRELVEIGAYVAGADEHADAALARLPRIEAFLQQDMDELTPTTDTWDRLAGLVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5W9</accession>
    <name>A0A0Q8V5W9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Rrf2 family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09405</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894582.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52644">
        <property type="protein sequence ID" value="KRC52644"/>
        <property type="gene ID" value="ASE19_09405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1794390at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000944">
        <property type="entry name" value="Tscrpt_reg_Rrf2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33221">
        <property type="entry name" value="PTHR33221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02082">
        <property type="entry name" value="Rrf2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00738">
        <property type="entry name" value="rrf2_super"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51197">
        <property type="entry name" value="HTH_RRF2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="15890" checksum="5508BE1D0D94AA12" modified="2016-01-20" version="1">MKLSAGVEWAVHCCVVLSQAQQPVPAARLADLHGVSRTYLAKHLQALARAGIVRPVEGRDGGYALTRPAGEITVLEVVEAVEGPDPAFRCTEIRQQGELAAPPEACTRPCGVARVMAAAEQAWRRSLAGTSVADLASSFDTTAMREQLGAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V636</accession>
    <name>A0A0Q8V636_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">YCII domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14925</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the YciI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896452.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51385">
        <property type="protein sequence ID" value="KRC51385"/>
        <property type="gene ID" value="ASE19_14925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2051456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005545">
        <property type="entry name" value="YCII"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03795">
        <property type="entry name" value="YCII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YCII" evidence="2">
        <location>
            <begin position="32"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="139" mass="15515" checksum="D4D099F5339C0F6C" modified="2016-01-20" version="1">MAKYLLLKHYRRTVGPEPVPGCDAPMDQWAPEEITAHIQFMRDWADDMAARGEYVDGQALEPRGTFVRYDGEGRPPVTDGPFPETKELIAGWMVIDVDSDERAYEAAASLSAAPGQGGRPIHEWIEVRPFYGEPPVVTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6G4</accession>
    <name>A0A0Q8V6G4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GGDEF domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10985</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52922">
        <property type="protein sequence ID" value="KRC52922"/>
        <property type="gene ID" value="ASE19_10985"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF" evidence="1">
        <location>
            <begin position="193"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="320" mass="33832" checksum="039F1B39B7144C5F" modified="2016-01-20" version="1">MGEAAYGADAFTAAARRVVDYLSRATPLETWSVSRVAGGEQVHVHVRDSELITTGQRVDWQDSFCRRMTTGAAHVVVDSAADPDYAPLPAAQDVRAYVGYPIADENGELFGILCGVGDTPLADADAVDPVLVEMLSGLLSTQLVVSRAADREVRAAQVAAAQSDTDALTGLTSRRGWDLFVDDAQRRIDAFGDLVAVAVVDLDGLKLVNDTAGHAAGDELIRRAGRGLRAAAGRQDRVARYGGDEFAILTNNVPVTDLDRHYARFVEALAGEGVRASLGHAWTGPGTATVADAFERADAAMYAVKRSRAGLRTAAPSPGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7D3</accession>
    <name>A0A0Q8V7D3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transglutaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12660</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895673.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53210">
        <property type="protein sequence ID" value="KRC53210"/>
        <property type="gene ID" value="ASE19_12660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1165640at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002931">
        <property type="entry name" value="Transglutaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01841">
        <property type="entry name" value="Transglut_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TGc" evidence="1">
        <location>
            <begin position="27"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="188" mass="19723" checksum="349043A1CFBAB699" modified="2016-01-20" version="1">MDLIARTPADYLGADDVVESTAAEVVALAERLRGAAGDDEAFARAAFAWVRDEIAHAGDAGDPRFAVSATDVLEDGVGWCYAKAHLLTAVLRAGGVPTGLCYQWLTDDGTAGGFVVHGLVAVHLDGSWHRQDPRGNKPGVAAEFSLGEERLAWPVDPALGERDLPEVYVAPAPGVVAALRRGVLAVEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7E7</accession>
    <name>A0A0Q8V7E7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13520</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895827.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53365">
        <property type="protein sequence ID" value="KRC53365"/>
        <property type="gene ID" value="ASE19_13520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="616258at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18808">
        <property type="entry name" value="SF1_C_Upf1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045055">
        <property type="entry name" value="DNA2/NAM7-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041679">
        <property type="entry name" value="DNA2/NAM7-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041677">
        <property type="entry name" value="DNA2/NAM7_AAA_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021754">
        <property type="entry name" value="DUF3320"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025103">
        <property type="entry name" value="DUF4011"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10887">
        <property type="entry name" value="PTHR10887"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13086">
        <property type="entry name" value="AAA_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13087">
        <property type="entry name" value="AAA_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11784">
        <property type="entry name" value="DUF3320"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13195">
        <property type="entry name" value="DUF4011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_11" evidence="1">
        <location>
            <begin position="284"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_12" evidence="2">
        <location>
            <begin position="1328"/>
            <end position="1456"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1816" mass="198037" checksum="36428495F22F0B9B" modified="2016-01-20" version="1">MSSEKVAGLTGDIARRLSSQINAWRSDLLTLDRRQKLVYFKHTKSASFEIASPGPAELFTALNGPLLLQAQGFETGAARGRIMVADKTDAEVATGARRLDLTSQQVYADRGFWTLYLGLGLLGWIDPADGKEAEAPIILCPVRIHRAGSQEPFQVSRTEDDLVINPALRLHLEKSFNLRMPAIDPDATGIDSILNEVGSLVGDHPGWMVQRRTVLTTFSFHKEAIYRDLEDHESTVAVHPIVQLIALGSEAPSSDSFNFRTPGTSGPLDDEQPPEELMSILDADSSQRACVLAARQGHSFVMDGPPGTGKSQTIANIIAELIASNRTVLFVSEKAAALDVVRDRLASKGLGDFTLELHSHAATRKEVVKQLADSLTRRATARGVFTEGEKRNLQATRGDLTDYARAMNEERPRLGRSLFAVLGRLATLQAYAHRPLDDIARWSTLGSIELSNLLDTTEQLAHAWRPVSEGDEYLWRELKDAVHTPAEVEGIKATTQSLAEATQMLDERCRAVDADLGLVWAGDEPSARRRLELLRLLEQRPDVPATWLTTAEPEALTSRVSRLRMAVDNYRAALEKLAEIVGPDRVDLLNPEACDPLADLGAFASLVWRPRGDTDDVALAASIDALRGSPLPFASIVEDVRQLGAMLGVSTEEISLRRAVELSHLAALAGSAALPERSWLNPAVQAALEESTRVLGSVVELVNDRRTAVEQVFTPAALGADLAGLDVRFRETHRGLRSLSKAARADKRALKAITVSGKADKLVRARLAEAVAWQKAETALDDAERQHAARLGAYYERTSTDFGRIGEAIRTAQSAIALAGNDLNAGPMSDQLSRDGHPDPRLTVIAQRLLAVASKWSSGAVAVLGPETEAELSSQPLELAAGRAADAAVVLAPLQEAIAHVTGLAQRSLTLEVGRDARVRAIALSEALVAIFDPYESDLATLGPLYSGLTTDWAKLEDALAWLAEVRRVIGGPVSSRSAERMERPIVLASELEQRIEEWSDQARRFGNVFSTARGAELLADLAADIAAGAALLFEMVDTCAGDVAEWDAFVLHRNELSTTGLTDVLDMMITKKVPADDVVPGIERAILQAWAESVIATDERVKRHRASDRDALVDRFRELDQAVVNQAHVAVAAACSARRPNSVSGTSAQLIRREAQKKSRHLPIREILSRTGEIVQELKPCFMMSPLSVSQFLPGDMTFDAVIFDEASQVLPSDAINCIYRGAQLIVAGDEKQLPPTSFFTQAVSDDDTDEELDLFESVLKSCKSSLPSLPLTWHYRSQHESLITYSNYRFYAPDGQALQTFPGATFESPDLGVASYVVNGVYRKGGARDNPIEADAVVDRLLFHREHHPELSIGVVTFSTAQEEAIAGALERRAATEPVLAGLLDSHDRLTGFFVKNLENVQGDERDIIIFSIGYGPDETGKFSMNFGPINRDGGWRRLNVAITRARRRVEVVSSFRAADMRDTTSDGLRHLRGYLDFAERGVAALSLDHRGSLGDAESPFEEDVLAVISSWGYDVVTQVGSAGYRIDLGVKHPDRPGEYVLAVECDGAAYHSAATARDRDRLRASVLEGLGWKIHRIWGIAWYRDRHGESLKLRSAIEAAITDSGEPSKFAMNPIVAVEMETVDLEAPPEWAVTYVAHTSRAHTSYPLASVEARPSLSSFIARVVEAESPVHQDVVYRRIRDAYGVGRIGHAIKANIEFVASRLSVDGAPVRLDEGGFYRIGPATQVRAPREDDEARTVLQTPPDELDLAVSQIVRDAVTIEDDGVTQLLRSVFGWRRAGGDIQAAVVASVDRCLRAGTIERSDRGTLRAGTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V812</accession>
    <name>A0A0Q8V812_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Kojibiose phosphorylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_14510</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 65 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896962.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53541">
        <property type="protein sequence ID" value="KRC53541"/>
        <property type="gene ID" value="ASE19_14510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="179460at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005194">
        <property type="entry name" value="Glyco_hydro_65_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005195">
        <property type="entry name" value="Glyco_hydro_65_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005196">
        <property type="entry name" value="Glyco_hydro_65_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037018">
        <property type="entry name" value="Glyco_hydro_65_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017045">
        <property type="entry name" value="Malt_Pase/Glycosyl_Hdrlase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03633">
        <property type="entry name" value="Glyco_hydro_65C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03632">
        <property type="entry name" value="Glyco_hydro_65m"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03636">
        <property type="entry name" value="Glyco_hydro_65N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036289">
        <property type="entry name" value="Glycosyl_hydrolase_malt_phosph"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="SSF74650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_65N" evidence="7">
        <location>
            <begin position="31"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_65m" evidence="5">
        <location>
            <begin position="364"/>
            <end position="738"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_65C" evidence="6">
        <location>
            <begin position="752"/>
            <end position="802"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="192"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="398"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="639"/>
            <end position="640"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="527"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR036289-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR036289-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03633"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF03636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="846" mass="94141" checksum="AE97948E9EF89B1B" modified="2016-01-20" version="1">MNAAGPSHKAPPVADPLDRTRFPVDEWRLVETRFDGSDLGTTESLFTVGNGYLGLRGNYSESRDAHVDGTFINGFHETWPISHAEEAYGFARIGQTIVNVPDPKVIRLYVDDEPLQVSVADLLEYERALDFRTGVLSRELLWRTPGGKRVRIRSTRMVPLEQRHLAIITFEVTLLDQRASLAISSQLINRQDQDAEPAPVADGSIGLPGSNAGEGGADPRKAEMFERRVLVPRLHAADPETGRVKLGYRTAQSGMTLGVVADHRLETEASYATEVHSEDDMAKVIYRISAEPGVPVRLTKVVSFHTAQTVPPRELIDRCERTLDRTHEEGIDHQYAAQEAWLADFWARADVEVPGQPALQQAIRWNLFSILQASARAEGQGIAAKGVSGSGYGGHYFWDTEIYVMPFLTYTMPWAARNALRFRYSLLDNARDRARELSQKGALFPWRTINGHEASAYYAAGTAQYHIDADIAYALSQYVGATGDEEFLAREAVDIFVETARLWADLGFWRDESRRTFHIHGVTGPDEYTTVVNDNLYTNVLARFNLRRAARAVWELQRDDPASYDALVRRTGLTEDEPEEWASCAEGMSIPFDAFLGIHPQDAHFLEREMWDLENTPLDKRPLLLNYHPLVIYRFQVLKQADVVLALFLQGEEFTPEQKKADFDYYDPITTGDSTLSAVVQSIVAAEVGYQDLALRYFMSALFVDLADRHNNTADGVHVASTGGVWSALVAGFGGFRDIGSAAGDQQWQIDPRLPSDWTSLTYRVALHGTRVRVTVRPTELELYVEHGTDPVTVSVRGELVKVAPGEPVVVPLEHQGPRLTGEPPYPAGIQRADGTVISAIVPSGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8H9</accession>
    <name>A0A0Q8V8H9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_16820</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 'GDXG' lipolytic enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893727.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50258">
        <property type="protein sequence ID" value="KRC50258"/>
        <property type="gene ID" value="ASE19_16820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1361074at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002168">
        <property type="entry name" value="Lipase_GDXG_HIS_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01173">
        <property type="entry name" value="LIPASE_GDXG_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Abhydrolase_3" evidence="3">
        <location>
            <begin position="79"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="304" mass="31766" checksum="C39F0F0AC1E23CD8" modified="2016-01-20" version="1">MPVDADLVPLLQILEGATPMHELQPAEARDGFRKLTIDFRPPVPLPEVASVTDTTVAGGDGPRPARVYRPLAEGPLPTVVMFHGGGFVIGDLDTHDAMARSISAGANAVVVSVDYRLAPEAPFPAAALDAIAAVRDVQGRLGELGGNDVLAVAGDSAGGNLSAVAAQNVPGLAAQLLIYPATDVLGDYASRVDNAKGYFLEQDTMLWFIGHYAPEGTDLFDPRLSPMRGNLAGQPPAVVCTAEFDPLRDEGIAYADGLAAAGVAVEHTTYPGMIHGFFDMGPWAPACQQAIDETIARFGKLLNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V909</accession>
    <name>A0A0Q8V909_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13180</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895850.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53670">
        <property type="protein sequence ID" value="KRC53670"/>
        <property type="gene ID" value="ASE19_13180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1873445at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="64" mass="6916" checksum="5CC433070322D8E2" modified="2016-01-20" version="1">MKIVADLDKCEGLGMCEAMANDYFEVDEDEDKVTVLDDAPPEADRAHVYAAVQACPVLALTLEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V936</accession>
    <name>A0A0Q8V936_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Transport permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_10295</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ABC-2 integral membrane protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895167.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53615">
        <property type="protein sequence ID" value="KRC53615"/>
        <property type="gene ID" value="ASE19_10295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1552415at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC_2_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006648">
        <property type="entry name" value="DrrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51012">
        <property type="entry name" value="ABC_TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="24"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="54"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="95"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="131"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="161"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="221"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="ABC2_membrane" evidence="9">
        <location>
            <begin position="6"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU361157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="244" mass="25990" checksum="E0795722BCFA226D" modified="2016-01-20" version="1">MTPRVTLAIAARVLTQLRRDHRTLAMLLVLPCLLQALLWWIFESTPLVFDRIGPALLAIFPFFVMFLVTSITTLRERSSGTLERLFTLPMGRLDFLAGYALAFGAVAAVQAAFAATVAVTLLDLDLNGPAVLLGVVGVADAVLGTALGLFVSAFARTEFQAVQFLPAIVVPQILLCGLLVPLERLPGVLEAVAHVLPLTWAVDAMQELATTSATGQVWRDIGVVAGFAAAALTLGAATLQRRTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9E1</accession>
    <name>A0A0Q8V9E1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06785</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895229.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53798">
        <property type="protein sequence ID" value="KRC53798"/>
        <property type="gene ID" value="ASE19_06785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="168"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="225"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="265"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="294" mass="30648" checksum="39512C369F904CC5" modified="2016-01-20" version="1">MTQELEADAASYDGPPIEPDGPYGGRLSSAVAYLPGPVRSVALEAGGTAVLLGKVLWSAVRHPRGYWGDVLDDMSYTIKRSWLSISIALAGFLMTLAVPSVTWIQNAGVSELYGPLLLVQSTRSFTVWVATLLVAGVVGAACTAELGSRKVREELDAMEVMGIDPVRALVVPRIVSITLLTTLLAIPAELITVLSSQLGSTLIAGIPPADFYGAFVWTTMSTVEIGALVLNCFLAGLLIGAVCAYKGLSASGGAIGLGKAVNQAVVSAFMALFVMQLGYNALILGFFPGLGALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9G5</accession>
    <name>A0A0Q8V9G5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Dihydrofolate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_07100</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DtxR/MntR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895280.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53848">
        <property type="protein sequence ID" value="KRC53848"/>
        <property type="gene ID" value="ASE19_07100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047422at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.60.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001367">
        <property type="entry name" value="Fe_dep_repressor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036421">
        <property type="entry name" value="Fe_dep_repressor_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038157">
        <property type="entry name" value="FeoA_core_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022687">
        <property type="entry name" value="HTH_DTXR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022689">
        <property type="entry name" value="Iron_dep_repressor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008988">
        <property type="entry name" value="Transcriptional_repressor_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02742">
        <property type="entry name" value="Fe_dep_repr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01325">
        <property type="entry name" value="Fe_dep_repress"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00529">
        <property type="entry name" value="HTH_DTXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47979">
        <property type="entry name" value="SSF47979"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50037">
        <property type="entry name" value="SSF50037"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50944">
        <property type="entry name" value="HTH_DTXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0804">Transcription</keyword>
    <keyword evidence="5" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH dtxR-type" evidence="8">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007871"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="228" mass="25695" checksum="A7C19760B4B16C07" modified="2016-01-20" version="1">MSDLIDTTEMYLRTIYELIEEGIVPLRARIAERLHQSGPTVSQTVARMERDGLLTVEGDRHLELTDDGRRLATRVMRKHRLAERLLVDVIGLDWEQVHEEACRWEHVMSESVERRLLELLDHPTESPYGNPIPGLDELGEEKLGENFMTDVEPLSQAATKDSSRALVRRISEEMQKDEALMSAMRRVGALPDKTITIQATADGVLVGSGGETAEIFPEAADHIFVKKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9N9</accession>
    <name>A0A0Q8V9N9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aspartate racemase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14875</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the aspartate/glutamate racemases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896443.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51376">
        <property type="protein sequence ID" value="KRC51376"/>
        <property type="gene ID" value="ASE19_14875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1359310at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047661">
        <property type="term" value="F:amino-acid racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015942">
        <property type="entry name" value="Asp/Glu/hydantoin_racemase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001920">
        <property type="entry name" value="Asp/Glu_race"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004380">
        <property type="entry name" value="Asp_race"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21198:SF7">
        <property type="entry name" value="PTHR21198:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01177">
        <property type="entry name" value="Asp_Glu_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53681">
        <property type="entry name" value="SSF53681"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00035">
        <property type="entry name" value="asp_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="229" mass="24550" checksum="D65ABFB941C69404" modified="2016-01-20" version="1">MQTIGLVGGMSWESSAAYYEGLNRGVEKRLGGFHSAKIIASSVDFGEVTALQEAEDWDGVATILRDAAISVERGGADFLMLCTTTFHRVAEQVQDAVDIPLLHLGDVVAEACKEQGVETVALLGTKFAMSRTFFTDRIAGHGLGVLVPEPGRHDELNRIIYDELVHGKVLDDSRRSVVAMISELWDAGAGGVILGCSELELLVRQADSELPVFPCTSLHVAAALDRALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Q4</accession>
    <name>A0A0Q8V9Q4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_07560</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CsoR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895360.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53928">
        <property type="protein sequence ID" value="KRC53928"/>
        <property type="gene ID" value="ASE19_07560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1868412at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003735">
        <property type="entry name" value="Metal_Tscrpt_repr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038390">
        <property type="entry name" value="Metal_Tscrpt_repr_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33677">
        <property type="entry name" value="PTHR33677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02583">
        <property type="entry name" value="Trns_repr_metal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0186">Copper</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0678">Repressor</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="102" mass="11403" checksum="1F5446FB339B7EEA" modified="2016-01-20" version="1">MTEGHAHQHSYIANRTKDDYLKRLRRIEGQARGLQRMVEEEQYCIDILTQVSAMTKALQSVALGLLDEHMAHCVVNAAREGGAEADIKLKEASDAIARLVRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAB7</accession>
    <name>A0A0Q8VAB7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16385</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893651.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50183">
        <property type="protein sequence ID" value="KRC50183"/>
        <property type="gene ID" value="ASE19_16385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1635512at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="216" mass="23293" checksum="F530E3248682152D" modified="2016-01-20" version="1">MTEAAQGDQDTATRLADLRAATGGPGTAAAAWTWLEELRGAAREDLRSTEPVLDALFAAGSTPTTLDGATEGILVATTTNRVLDTAVKALTSVWMPWRGKRFDLESGSGDNRMTESSSLVGKLLWPLYSMRTDDDGRSAFDFSTYAEPGVEDPDVDVLVIDYAGIPDNPALVIRSIRDELVELVPGVYLGKIFFKMPKLTGDGGFERIGFFALRTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAG1</accession>
    <name>A0A0Q8VAG1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10625</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894790.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52857">
        <property type="protein sequence ID" value="KRC52857"/>
        <property type="gene ID" value="ASE19_10625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041581">
        <property type="entry name" value="Glyoxalase_6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18029">
        <property type="entry name" value="Glyoxalase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyoxalase_6" evidence="1">
        <location>
            <begin position="8"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="119" mass="13187" checksum="3B390109EE18318A" modified="2016-01-20" version="1">MAIARNPHVVLDCPDTTLLAEFYGALLGWAPKLDPDGSWATVSDGQRHLHFQRVDDYRPPQWPGQELPQQFHLDFDVDDLDEGEAGALGLGATKHPHQPGTTFRVYLDPAGHPFCLCQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAJ2</accession>
    <name>A0A0Q8VAJ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Flagellar motor switch protein FliN</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_09320</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FliN/MopA/SpaO family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894565.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52627">
        <property type="protein sequence ID" value="KRC52627"/>
        <property type="gene ID" value="ASE19_09320"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1875967at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012826">
        <property type="entry name" value="FliN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001543">
        <property type="entry name" value="FliN-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001172">
        <property type="entry name" value="FliN_T3SS_HrcQb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036429">
        <property type="entry name" value="SpoA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01052">
        <property type="entry name" value="FliMN_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00956">
        <property type="entry name" value="FLGMOTORFLIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101801">
        <property type="entry name" value="SSF101801"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02480">
        <property type="entry name" value="fliN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0966">Cell projection</keyword>
    <keyword evidence="4" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="8" id="KW-0969">Cilium</keyword>
    <keyword evidence="5" id="KW-0283">Flagellar rotation</keyword>
    <keyword evidence="8" id="KW-0282">Flagellum</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FliMN_C" evidence="7">
        <location>
            <begin position="190"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="266" mass="26128" checksum="67216CD15BE68C4D" modified="2016-01-20" version="1">MTDATPALAEAVAEAAAAVLPSVSPLVLGPVQPGSPHVAAAFAGGAVAELDGGVPGVVVVLVGNELVDALASSPLGGLDVAAAVQPALDAAAHRLGARARSAATVDLGADDFDIAALLGGEFSTVPLIGTGIAAAVLVPAATLAGAKDPITETDPAPAAADAVAAAVIDEPFVPAFGQAPAPVVPRGLELLHGVDMEVTVELGRTRMTVRDLLALTPGAVLELDRAAGSPADLLVNGRLVARGEVVVVDEDFGLRVTEILDAAKTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAN6</accession>
    <name>A0A0Q8VAN6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893780.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50311">
        <property type="protein sequence ID" value="KRC50311"/>
        <property type="gene ID" value="ASE19_17110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1380748at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016137">
        <property type="term" value="P:glycoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10320">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003737">
        <property type="entry name" value="GlcNAc_PI_deacetylase-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024078">
        <property type="entry name" value="LmbE-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12993">
        <property type="entry name" value="PTHR12993"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02585">
        <property type="entry name" value="PIG-L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102588">
        <property type="entry name" value="SSF102588"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="29213" checksum="23C7CA218E5097A5" modified="2016-01-20" version="1">MARNRTLACVMAHPDDDAYGIAGTVALHADEADFRFVLVLATHGELADIPAGASWTREDLPAMRQAEDEAAWRAVGRVPDRHEWLGLPDGGLADLRFEDVVDAVLPILDEEDPAVVVTFGPDGIFGHPDHITIGAATDEAFRRLRAPGRRGFQRLVHGAVPQSVFERWNAQRAEMGLPTFDPTQTYHMRGVPDEEIGVVVDCGSVAHRVVAGLQQHRSQHHVMSDDPTDTEQWARRVRRESYVVVWPEREPGAPLLADLFEGLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBT5</accession>
    <name>A0A0Q8VBT5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Tyr recombinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_12125</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895050.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53123">
        <property type="protein sequence ID" value="KRC53123"/>
        <property type="gene ID" value="ASE19_12125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="785253at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="4">
        <location>
            <begin position="236"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="476" mass="51556" checksum="F3FEDF3DC7AAF45E" modified="2016-01-20" version="1">MTAVLPSPRSLDMPPVLDTAASAPARRRRRRRSRGEGTQRERRPGVWEVRLPADVDPVTGRTRHLSVTVHGTEADATATRIRLLATGRPIIPPPDRVTVGFLLQAWLAADHPWKPSTYVGYTSNARALACDPVAERPAAALSPDEIRCRLADWRDAGASDAVVAARFRVLRACLTWAYNERLLDTHPLRLMRGPHRSPPRQALADDEVRALLLAAELRVIEAHANIPHRLASEGSSSPGASANRDAARVNAAAAESSAAWRRLRVAEQCLLLVRLAADSGARRGELVALRFDDLTGRVLHIQRAVSAGQLTTPKSGHTRTVTLGADTADLWHRLHDTWAERVARAAVPLGGAGPMGAAGAHVLGPWVFSSDSGHWRRLGSEVLGHRFEAVRDAAGIPDATLHRLRHSVATFLVSQGKILEAQERLGHADPSTTLREYSHVLPGRDAVVADAINDYLDLTAGPPAAPAETTHLNRDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC51</accession>
    <name>A0A0Q8VC51_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Dihydrofolate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_05120</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the folylpolyglutamate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894235.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54846">
        <property type="protein sequence ID" value="KRC54846"/>
        <property type="gene ID" value="ASE19_05120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1232874at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004326">
        <property type="term" value="F:tetrahydrofolylpolyglutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001645">
        <property type="entry name" value="Folylpolyglutamate_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018109">
        <property type="entry name" value="Folylpolyglutamate_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11136">
        <property type="entry name" value="PTHR11136"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001563">
        <property type="entry name" value="Folylpolyglu_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01499">
        <property type="entry name" value="folC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01012">
        <property type="entry name" value="FOLYLPOLYGLU_SYNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase_M" evidence="6">
        <location>
            <begin position="140"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="5">
        <location>
            <begin position="306"/>
            <end position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR001563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="450" mass="46964" checksum="06128F9EE026C74F" modified="2016-01-20" version="1">MSEPVARPAQTFAEAEDALLSRWPETRLEPSLDRIRAFTELLGDPQRSFRSIHLTGTNGKTSTSRMIDALLRALDLRTGRFTSPHVEKMSERISVDGEPLDDEAFVRAFNDVAPYMHLVDQAEAHPLSFFEAVVGMAYAAFADAPVEVAVVEVGMGGSWDATNVLDADVAVVTPIAVDHANYLGGTTAEIAREKAGIIKPGSVAVLAQQSAEAATVLLARAAEVGATVAREGLEFNVVARAAAVGGQVVTLQGLRGRYDDLFLPLYGAHQAQNAATALAAVEAFIGGDEPLGDDVVRGAFAEITSPGRLEVVRRSPTIVLDAAHNPHGAAAAAAALEDSFQFDPLIGVIGVMGDKDAEGLLAAFEPVLSQIVVTQNSADRAMPADQLAEVAREVFGEDRVSVVPRLADAIDEAAGLAESAGSDALSSGAVLVTGSVVTVGEARVLLGGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCQ5</accession>
    <name>A0A0Q8VCQ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894139.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54940">
        <property type="protein sequence ID" value="KRC54940"/>
        <property type="gene ID" value="ASE19_05675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1196738at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="44"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="314" mass="34818" checksum="DB7E62444661CD53" modified="2016-01-20" version="1">MATPAPRPEQRVRTASLAFRDILSDDGTHVRAWTNDPDGVIDGPTVVLCNGLGTNPYLWPWLLDPECGVRIVSWNHRGVGGSERPHDRKHVEIEHFVQDGLSVMDHFGIDHAVLMGWSMGVNTAFELTYRHPERVRGIFAMCGVPGDTFATMLAPLHLPRFVARAITVNACRIAQFSGPLTNPVARRIPMGPRTVKLLGRTGFMFPVPDPDAAAVGLQEFLTTPVDWYARLAIGTSRHPRVRLSQIHVPTMFVSATYDVLAGARDMASASRRLSDRGMESEYVELKGSHFVQLEQPERVHQLLLDFLEGIEATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCW2</accession>
    <name>A0A0Q8VCW2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B</fullName>
            <shortName evidence="11">Asp/Glu-ADT subunit B</shortName>
            <ecNumber evidence="11">6.3.5.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">gatB</name>
        <name evidence="13" type="ORF">ASE19_05730</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10 11">Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + H2O + L-aspartyl-tRNA(Asn) + L-glutamine = ADP + 2 H(+) + L-asparaginyl-tRNA(Asn) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14513"/>
            <dbReference type="Rhea" id="RHEA-COMP:9674"/>
            <dbReference type="Rhea" id="RHEA-COMP:9677"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78515"/>
            <dbReference type="ChEBI" id="CHEBI:78516"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 11">
            <text>ATP + H2O + L-glutamine + L-glutamyl-tRNA(Gln) = ADP + H(+) + L-glutamate + L-glutaminyl-tRNA(Gln) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17521"/>
            <dbReference type="Rhea" id="RHEA-COMP:9681"/>
            <dbReference type="Rhea" id="RHEA-COMP:9684"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:78521"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4 11">Heterotrimer of A, B and C subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the GatB/GatE family. GatB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.-" evidence="11"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894128.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54948">
        <property type="protein sequence ID" value="KRC54948"/>
        <property type="gene ID" value="ASE19_05730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="497127at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050566">
        <property type="term" value="F:asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050567">
        <property type="term" value="F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00121">
        <property type="entry name" value="GatB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004413">
        <property type="entry name" value="Apn/Gln-ADT_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017959">
        <property type="entry name" value="Asn/Gln-tRNA_amidoTrfase_suB/E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006075">
        <property type="entry name" value="Asn/Gln-tRNA_Trfase_suB/E_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018027">
        <property type="entry name" value="Asn/Gln_amidotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003789">
        <property type="entry name" value="Asn/Gln_tRNA_amidoTrase-B-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023168">
        <property type="entry name" value="GatB_Yqey_C_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017958">
        <property type="entry name" value="Gln-tRNA_amidoTrfase_suB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11659">
        <property type="entry name" value="PTHR11659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02934">
        <property type="entry name" value="GatB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02637">
        <property type="entry name" value="GatB_Yqey"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00845">
        <property type="entry name" value="GatB_Yqey"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89095">
        <property type="entry name" value="SSF89095"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00133">
        <property type="entry name" value="gatB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01234">
        <property type="entry name" value="GATB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="7 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GatB_Yqey" evidence="12">
        <location>
            <begin position="349"/>
            <end position="496"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00016923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00024799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC54948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="497" mass="53353" checksum="1182B0922413C99F" modified="2016-01-20" version="1">MSDTLVPFDEVVAAYDPALGLEIHVELNTNTKMFCGCPATFGGEPNTQVCPTCLGLPGAMPVVNGKAVESAIRIGLALNCEIAEWCRFARKNYFYPDMPKNFQTSQYDEPIAFEGYLDVDVEGETFRVEIERAHMEEDTGKSSHVGGTDGRIHGADYSLVDYNRAGIPLIEIVTKPILGAGEKAPLVAKAYVSAIRDLIVALGVSDARMDQGSIRADVNLSLAPKGSGVLGTRSETKNVNSLRSVERAVRYEMSRHAGILSAGGSVLQETRHFHENDGSTSSGREKSDAEDYRYFPEPDLVPVAPSREWVEELRATLPENPATRRARLQEEYGFSDLEMRDVWASGALPLIEATVAAGTSPQSARKWWVADLLRRANDAGVELAEVGVTPAQVAEVQALVDAKTINDKLARQVFDGLIAGEGSAADVIEKRGLALVSDDGPLIAAIDDALAAQPDIAEKIRGGNHAAAGAVIGAVMKATRGQADAARVRELILEKLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD84</accession>
    <name>A0A0Q8VD84_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Fibronectin type-III domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_14915</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896450.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51383">
        <property type="protein sequence ID" value="KRC51383"/>
        <property type="gene ID" value="ASE19_14915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2115846at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="SSF49265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359921" description="Fibronectin type-III domain-containing protein" evidence="3">
        <location>
            <begin position="33"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="4">
        <location>
            <begin position="292"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC51383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="385" mass="40498" checksum="59B10084D3279D8B" modified="2016-01-20" version="1">MRTRAGLISLALLGSSLAAVAGATVVASPASALAERWCVDVPAPCVESLTVNGTPVFSGATVEAAPTSESGRQELHPAVDVSALAATDVIVLKVRTPLSFNPERATGRYGLIDVDRGTGTSSNWFQVAGTPVLWANGCVAGVDWPWFCPETADSNDMVFDIDLADLDDPDESSIGQYAGTNATYNGIFFEEQADGSHALTTEVVAPHFYFGTTTPVVGSVRFRVSHRQMRLDMGIPNPETLVPGSLSGTINGGTGGGSFTTWQDPDGAGFFIEASGFTFSLKKLKVRAARITPTRPTITRTKRLTARAAVLTHTASKARGARVTSYAAVCRNRAGHVVRGTGLATRATVVVTGLRRGKAYTCQVVANSKAGRSLWSPKVGVRARP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDC0</accession>
    <name>A0A0Q8VDC0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thioredoxin reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15120</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896482.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51415">
        <property type="protein sequence ID" value="KRC51415"/>
        <property type="gene ID" value="ASE19_15120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="692968at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="244"/>
            <end position="552"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="572" mass="61294" checksum="F6AD6553CD9F3264" modified="2016-01-20" version="1">MSAPAADPVILLVSGEEIDVLTQQFRRYEREYDVRAATTAADATAILQRARASGQPVAMVVTDSELPDENVLLALHDWRTLVPTARRIVAIPISRFADDTNTLRPYLAKGKFDTYLVLPQGRRDEEFHYAVVELLSDWGATVASSEIDTVRIITPAATPLSLGVRDFLDRVGFPHRTYAPDSPQGQEAQELYGRQHDAPPTYPLVHLSSKPFADRPIIAPTSVRELSALMYGRPSDIDCTTVVDLAVVGAGPAGLAAAVYGASEGLSTVVLEQEVIGGQAGTSSMIRNYLGFPRGISGMRLGQRARTQAIRFGARFFTGWPVVELAPGVDGAPHTLITEGGKVHARSILIASGVAYRRLGVAPLEDLVGAGVNYGAAMTAAREMEDRDVYVVGGGNSAGQAAVHLARFARSVTILIRREDLAATMSKYLIDELQWNPRIQVRPCTEIIDGGADEGGQLGWLQLCDVRTRQEERVSAGGLFLLIGAAPHCDWLGDDVLRDEHGFVLTGRDVPTECWADGLPPENLATCVPGIFAAGDIRSGSMKRVAAASGEGASAVSLVHGYLEGLRVPTAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDE2</accession>
    <name>A0A0Q8VDE2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05475</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55144">
        <property type="protein sequence ID" value="KRC55144"/>
        <property type="gene ID" value="ASE19_05475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1978888at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="20096" checksum="1C1C1A9AA98BACA8" modified="2016-01-20" version="1">MTGRRRGQDAFRVGLKTWWRGRRDGGAQEQAYVVPAAPTEQDIRAALNQVHAMLTSNNAPPVVIARVERIARTINQTLPRLSQLGLGSEESYSVVATATDYLPEALQSYLRLPRDWADTRPIDGRKTALLILIEALELLGLTMDKILDAANRADAQALIAHSRFLDAKFGHSSTGGPDLTLGAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDF6</accession>
    <name>A0A0Q8VDF6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">NADH-quinone oxidoreductase subunit C</fullName>
            <ecNumber evidence="2">7.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">NADH dehydrogenase I subunit C</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">NDH-1 subunit C</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">nuoC</name>
        <name evidence="5" type="ORF">ASE19_10050</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">NDH-1 is composed of 14 different subunits. Subunits NuoB, C, D, E, F, and G constitute the peripheral sector of the complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
            <orientation evidence="2">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the complex I 30 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894686.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52752">
        <property type="protein sequence ID" value="KRC52752"/>
        <property type="gene ID" value="ASE19_10050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1735902at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01357">
        <property type="entry name" value="NDH1_NuoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010218">
        <property type="entry name" value="NADH_DH_suC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037232">
        <property type="entry name" value="NADH_quin_OxRdtase_su_C/D-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001268">
        <property type="entry name" value="NADH_UbQ_OxRdtase_30kDa_su"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00329">
        <property type="entry name" value="Complex1_30kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143243">
        <property type="entry name" value="SSF143243"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01961">
        <property type="entry name" value="NuoC_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-0874">Quinone</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-1278">Translocase</keyword>
    <keyword evidence="1 2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Complex1_30kDa" evidence="4">
        <location>
            <begin position="102"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="221"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="243" mass="26737" checksum="00218A95D0123176" modified="2016-01-20" version="1">MSDDKPAGPAKAVEQPATEQSPENAPEALGEPGVEVRAVGERQGMFGVKGSGDTSGYGGLVAPVVLPGAAQRPYGGWFDTVADKLDPLVEQVVIHRGEITFHVHRDHLVAAMRLIRDDPALRFEFLSGVNGVHYPGDAGRELHAVYHLASFTWNRRIRVETSAPDSDPHIPSMVPIYPAADWHERETWDMFGLQFDGHPALTRILMPDDWPGHPQRKDYPLGGIPVEYKGATVPPPDQRRSYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDU0</accession>
    <name>A0A0Q8VDU0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06985</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895258.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53827">
        <property type="protein sequence ID" value="KRC53827"/>
        <property type="gene ID" value="ASE19_06985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="249" mass="26230" checksum="17E33F94DC2976B1" modified="2016-01-20" version="1">MRFENKVVVVTGAAQGIGEAYARALAKEGAAVVVADLNAEAGEQVAKQIEADGGRAIFVPCDVSSAESADALVERTVEELGGIDHLVNNAAIYGSMEFNLLIAVDWDYYRKFMAVNLDGALVMTRAVYPEIAKRGGGAIVNQSSTAAYLYSGFYGLAKAGINSLTQQLAHELGGQRIRVNAIAPGPTDTEATRTQAGDAAKDIVRNSLAIKRMGSVDDMVGALLFLLSDDASWVTGQILAVDGGQTFRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE18</accession>
    <name>A0A0Q8VE18_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Pantothenate synthetase</fullName>
            <shortName evidence="5">PS</shortName>
            <ecNumber evidence="5">6.3.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Pantoate--beta-alanine ligase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Pantoate-activating enzyme</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">panC</name>
        <name evidence="6" type="ORF">ASE19_08000</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>(R)-pantoate + ATP + beta-alanine = (R)-pantothenate + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10912"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15980"/>
            <dbReference type="ChEBI" id="CHEBI:29032"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57966"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.2.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Cofactor biosynthesis; (R)-pantothenate biosynthesis; (R)-pantothenate from (R)-pantoate and beta-alanine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="5">The reaction proceeds by a bi uni uni bi ping pong mechanism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the pantothenate synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.1" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895441.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54009">
        <property type="protein sequence ID" value="KRC54009"/>
        <property type="gene ID" value="ASE19_08000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1661843at2"/>
    <dbReference type="UniPathway" id="UPA00028">
        <property type="reaction ID" value="UER00005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004592">
        <property type="term" value="F:pantoate-beta-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00560">
        <property type="entry name" value="PanC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00158">
        <property type="entry name" value="PanC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003721">
        <property type="entry name" value="Pantoate_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042176">
        <property type="entry name" value="Pantoate_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21299:SF1">
        <property type="entry name" value="PTHR21299:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02569">
        <property type="entry name" value="Pantoate_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00018">
        <property type="entry name" value="panC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 5" id="KW-0566">Pantothenate biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton donor" evidence="5">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="163"/>
            <end position="166"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>(R)-pantoate</name>
            <dbReference type="ChEBI" id="CHEBI:15980"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="200"/>
            <end position="203"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="297" mass="31487" checksum="39A7D1B4E5EC5CCA" modified="2016-01-20" version="1">MRVTTTPAVARSRTDLDALLGARRASGPVVFVPTMGALHEGHASLMRIARERAGGDGTVVVSIFVNPLQFGAGEDLDRYPRTFDADLELSGAAGVDVVFAPVVAEMYPDGVPHDGAATEAVTVQPGPLADLFEGASRPGHFRGVLTVVAKLFGLVRPDVAVFGEKDYQQLALIRRMVADLCMGIEIVGGATDREPDGLARSSRNRYLDAEQRQQAVALSRALRAAQERAAYGVPAARWAAMNILKAAAPGVELDYLALTTTGLGELPDYPDAGTEGRVLVAARVGTTRLIDNLPLQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE70</accession>
    <name>A0A0Q8VE70_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Butyryl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_10750</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894813.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52881">
        <property type="protein sequence ID" value="KRC52881"/>
        <property type="gene ID" value="ASE19_10750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="357522at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025878">
        <property type="entry name" value="Acyl-CoA_dh-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020953">
        <property type="entry name" value="Acyl-CoA_DH_N_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12806">
        <property type="entry name" value="Acyl-CoA_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12418">
        <property type="entry name" value="AcylCoA_DH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AcylCoA_DH_N" evidence="8">
        <location>
            <begin position="3"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="164"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="298"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_C" evidence="9">
        <location>
            <begin position="484"/>
            <end position="617"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC52881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="621" mass="67652" checksum="EBF9070A9F5001C7" modified="2016-01-20" version="1">MSHYKSNLRDIEFNLFELFNVQQYLGTGLYEEMDADTAREILSEVERIAREDLAASFVDSDRNPPVFDPKTNTAPVPASFKKSYDTWMESGFWGLGLPEEIGGTTAPPSLVWASGEMVLGAQAPIWMYCTGPSMGSVVFKNANGVARDVRIAEIMVERLWGATMVLTEPDAGSDVGAGKTFATPNEDGSWNISGVKRFITSAESDLQENIMHLVLARPKGVEGVGGPGTKGLSLFLVPKYHFDHQTGELTGERNGVYVTNVEHKMGIKVSNTCELTFGDPQVGGGEPAQGWLLGEVHDGIRQMFDVIENARMMVGTKAIATLSTGYLNALEYAKERVQGSDLTQASDKAAPRVTITHHPDVRRSLMTQKSFAEAMRSLVIYTSTWQDQVQIAKAAGEKNELAEAVNDLLLPIVKGYGSERSWVLLGTESLQTFGGSGFLQEYPIEQYVRDAKIDTLYEGTTAIQGQDFFFRKIVKDQGKALGHLAAEIKSFIESEAGNGRLKNERELLANALADAEAIVGLMINDLMSAQDEIKNIYKVGLNTTRVLMALGDVVCAWLLLRGAEVALAELDGGSGADTAFYEGKVAAAQWFAQLNLPRLSAELKIAQGTSLDVMELDEAAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFJ0</accession>
    <name>A0A0Q8VFJ0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ldi domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12875</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895711.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53249">
        <property type="protein sequence ID" value="KRC53249"/>
        <property type="gene ID" value="ASE19_12875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="383180at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041411">
        <property type="entry name" value="Ldi"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18566">
        <property type="entry name" value="Ldi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="124"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="286"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="Ldi" evidence="2">
        <location>
            <begin position="223"/>
            <end position="523"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="642" mass="69585" checksum="0B613EBDC79AEA05" modified="2016-01-20" version="1">MTTVAVRPDETTTVLLPTDVPLFPPATRRAMLRSGAGYAVLWALGAVALAVDAGPRPTVLALGLTLPGGGLLHAGHPVLGAVALLAVLLAVFVWWAAGPTVLPPLVWLVSAALPALTLDDPTGSAGAGIAVLTAVPAAALVAVAVHAARHRSQRRRGAKLNARLAEVGFRITGAPSYPRDAAVVEHTAEDLRRLRAALDTALQPADSYDGFTHLDQFREGALRYQLNALSYGLSMSQFTRTPAFRGYLAEAQRNTIDKVLQRKVWGYWALENAWGNLRRDKDPVPLGGNVMLTGFFGLQVGMYSLLNDDRYTRPGSLDFRWDDDTSFPYDLGALAANVRASVRDSRFSLYPCEPNWIYTICNTFGLNTVLAQEQLQSSGEADDVRARLRRAYESEFLRPDGRIVGVRSSHLGLSWNFWASPSVQLATAYWLNPGMPDLAQRTWWLLRDGWLRVEDGLVSTPRSVVSRLDPGSYQLGTDTFTLAVTTMAAREIGDEETARAAERTIAERCPTEQRYGAERVAGASGLANSYLNLGRFGRRSALRDLVAFGPPREWRDGPVLDAAAYPDVLVARAVSDGAALDLVLVPGEGPVRTRLTLAQLRPGTRYDVTGARDATLTADGEGRAVVEVELGRRQEVRVSPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGG8</accession>
    <name>A0A0Q8VGG8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">MurNAc-LAA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_09440</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895149.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53597">
        <property type="protein sequence ID" value="KRC53597"/>
        <property type="gene ID" value="ASE19_09440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1184688at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008745">
        <property type="term" value="F:N-acetylmuramoyl-L-alanine amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02696">
        <property type="entry name" value="MurNAc-LAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002508">
        <property type="entry name" value="MurNAc-LAA_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01520">
        <property type="entry name" value="Amidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00646">
        <property type="entry name" value="Ami_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360019" description="MurNAc-LAA domain-containing protein" evidence="2">
        <location>
            <begin position="21"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="MurNAc-LAA" evidence="3">
        <location>
            <begin position="138"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="278" mass="28879" checksum="A0A88B6888E864A1" modified="2016-01-20" version="1">MRWVVPGLLAAVLAAGCSTSAPEGNGTAPSVPGSASAPPSATPGRGPLAGRVVVLDPGHQLGNRAFGSEIGEPVDAGGFTKECNTTGTATRDGFPEATFTWLVALEARRELERLGARVVLTRSANTDDAWGPCVDERGRLGNPGQPGPTADLRISIHADGVLADGATGFHVIRPERLDGWTDDIAKPSRRLAVLLRDALVRAGFAASSYRGREGIDVRGDLGTLNLSDVPAVMAELGNMRDPQEGALMESRAGQRRYARAIVAAARAYLGVSGPGRQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH79</accession>
    <name>A0A0Q8VH79_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Isochorismatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894373.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54707">
        <property type="protein sequence ID" value="KRC54707"/>
        <property type="gene ID" value="ASE19_04290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1442962at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.850">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000868">
        <property type="entry name" value="Isochorismatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036380">
        <property type="entry name" value="Isochorismatase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00857">
        <property type="entry name" value="Isochorismatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52499">
        <property type="entry name" value="SSF52499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Isochorismatase" evidence="1">
        <location>
            <begin position="7"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="22457" checksum="9A796B91C52C20DD" modified="2016-01-20" version="1">MTEPRRALIVIDVQQEYFDGILQIQAPPREKTLANVVTALDAAEEHQLPVVVVQHQLPEGAPIFAVGSDSWSLHPEIEKRLQPSWKRVTKHKGSVFAGTDVAAWLAEQGVDTVTLVGYMTNNCDLATAVGAEEVGLAAEVLSDASGAIHLANEIGKVSADVLHQSLLVLLHSNFAAVATTRDWVHALVAGEVLPKSDLGTSAMQGRAAFAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHB9</accession>
    <name>A0A0Q8VHB9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Integrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_04460</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894342.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54739">
        <property type="protein sequence ID" value="KRC54739"/>
        <property type="gene ID" value="ASE19_04460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="785253at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14659">
        <property type="entry name" value="Phage_int_SAM_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="6">
        <location>
            <begin position="74"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="5">
        <location>
            <begin position="178"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="251"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="42994" checksum="81CC71AFDB4A76FA" modified="2016-01-20" version="1">MARPRTPIGTFGEISFAPTTGGGFRARTRYRDDDGKVRRVSATGASRSEAVRNLKKAVAQRPTYRSAGELSGDSSFTRLVKVWLSDLDAEARLAPSTRALYERNMRQLVLPAFADYTLREITVSKVDRYIKTLATAQSHSMAKQARTVLSLAFGLAVRYDALSKNPVRDIAQMRKPPTQAMALTLAQVEQIRIAARSWRRGPGFAGPPPDGQLEQIIEVMLGTSARIGEVLAIRKCDVDVTVSPATVRISGTIVSPSGGPTHRQPHPKTKTSSRTVAVPSFTAAVLRRRLEGLAPEEPEHLIFFSRTGTPLTTNNVRRRLRAVMDDAGIEGVTPHSFRRTVATVVDRAGGADLAAELLGHTSSDITKAHYIEPSEKVNPVTADILEALAPRDGAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHE1</accession>
    <name>A0A0Q8VHE1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_03170</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892843.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56824">
        <property type="protein sequence ID" value="KRC56824"/>
        <property type="gene ID" value="ASE19_03170"/>
    </dbReference>
    <dbReference type="OrthoDB" id="325071at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140658">
        <property type="term" value="F:ATP-dependent chromatin remodeler activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="SWIM-type" evidence="2">
        <location>
            <begin position="60"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="3">
        <location>
            <begin position="617"/>
            <end position="776"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="4">
        <location>
            <begin position="900"/>
            <end position="1062"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1062" mass="116429" checksum="EA8ECBE32DFB8BC3" modified="2016-01-20" version="1">MNVLAQLTDAFLGRAFDAGTLERAHDVVARGAVRRPEIGMLSAAAVTATAEVVGSREEPYQVQLHAEAPKDDYAGWLFTVCTCPVRSSCKHGAALALTLRQSFAQPSGPASTWRRTLERVVTELDKQRSVPGEETPLALEISLAAPRHSYRSPGTTLHVRPMRQGRNKPWVKTGAEWSDVAAALTTGAFPRAQAEAVVALHTLWSGQRGYSQAGSMPALDEFGSQVVRALRTVRDAGVTLLGGGQIASVEIAEEAAEVVVRLGDAASGGTEVQGLVTLGEQSWRGDDVVPIGNPATSVGLVDPLGHLVVADLTAPMPLAVRHLVDGPGFTVPPAEAEEFRAELPVLMRHLPVRAETATIELPEPLTPTLVLTVTWHSATKAGLAWTWEYGDDGSRSCPITSSDPLGGVRDRTAERALRALVAEHLLRTTTATDGEALTLAIHDLPHLRTLEGVRVVEEERPDFREVDVAPEIRFELVEPEGDHTTTDWFDLAVSVRVADESLPLPDVLAALTLGEEFLVLPSGMYVTTDRPEFARLREVVAAAAELHDREGDRIGVGRQDLGLWAQLAETGLVDTQVAEWVRRAEALRDLTELPRPEPRGLVTELRSYQREGFWWLAFLWQHGLGGILADDMGLGKTLQVLALIAHARAERPLDGPFLVVAPTSVVTAWADEAARHAPDLRFGVVRRGTDDVAEIARESDVVVTTYTLLRLAQDDYAAIGWAGLVLDEAQQVKNHQSKTYTAVRMIDAPFRLAVTGTPFENRLMELWSLLSVTVPGLYPWPRRFAERVVRPIERDGDQAVLDRFRARVKPFLLRRTKELVADDLPPKQEQVLSVELEPKHRRIYDTHLARERQRILGLVDDFDRNRVAIFSALTTLRQLALDPALVDDEHDDVGSAKLDVLVDHLAEITAEGHKALVFSQFTSFLGRVRSRLQDVGIPTTYLDGSTRDRAAVIDDFRSGTAPVFLISLKAGGVGLTLTEADYVFVLDPWWNPAAEAQAVDRAHRIGQTRHVHVYRLVATDTIEEKVMELKARKAELFAQVIDGDGAMSTTIGADDIRGLFED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHG2</accession>
    <name>A0A0Q8VHG2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">MMPL domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_03785</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892950.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56933">
        <property type="protein sequence ID" value="KRC56933"/>
        <property type="gene ID" value="ASE19_03785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="149255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="255"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="280"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="305"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="335"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="360"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="412"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="596"/>
            <end position="614"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="621"/>
            <end position="643"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="649"/>
            <end position="669"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="681"/>
            <end position="701"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="707"/>
            <end position="730"/>
        </location>
    </feature>
    <feature type="domain" description="MMPL" evidence="7">
        <location>
            <begin position="525"/>
            <end position="732"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF03176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC56933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="755" mass="77649" checksum="9948909472CB2181" modified="2016-01-20" version="1">MAAALGLLALLALLVGGLLRVEVETGVDEFVPRDDAAVRATAELAGQFGGDPVVVLLESDEPGQLLLKDNLPALLQLEGALAALPHVKAVYGPGTVLNQIAGQAQDLLAELGGYRDGLRSAAQARARKAGGSPREVAAAGSRATAQFDERYSGLLAKGMPGGLPTLHNQTFVNRVIFNDEGDPRPQWDFLVPRPDAVALLVRPDASLPQSDVESLVSSVEAAVADSDVSARRTTVTGVPSVVAALGEQVRREVPLLGGLAVLAVGAWFLLTSWTRRRLRLLPLVATLLGTGTTLAVAGWSGRPLALTAVAFLPVLLGIGSDFMTYLHRGAGRRTVLAAALASAAGFGALAVAPVPAVADLGTSLAVGLVVTVLVSLAVHRWGPQEAETPVVEGPSARSGPAAASMPVGRRRLLLLVPVAAAAVGWVLFPSLSMQSDFTSLADGLPEYDAARSVERVVGASGEVALVVRGDDVLSADSFGWMSQARRDVIARHGDELSAVLSPADVLSFLGAEPAPSEVDAAMRLLPPYLASSVVSPDRTLAVMTYGVDLRDVDRLEVLRDYLEEVAATAPEAIDVEVAGLPMVAVSAQEAMDRERMLGAVLGIVAAGVALLVLLRDVRLALVAMLSAAVASGLVALGMALVGASLTPMTAGLGSLTAAVACEFTVLLALAQRRGDRRIARAVDLAAAASATGYAVLAVSDLGLIRGFGLLLAVTVAVALGASRLLVWALLPAGSSRGPEGVAGVVPEETRVLEKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI63</accession>
    <name>A0A0Q8VI63_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Electron transport protein SCO1/SenC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02150</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SCO1/2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893055.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57019">
        <property type="protein sequence ID" value="KRC57019"/>
        <property type="gene ID" value="ASE19_02150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1994201at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd02968">
        <property type="entry name" value="SCO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003782">
        <property type="entry name" value="SCO1/SenC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12151">
        <property type="entry name" value="PTHR12151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02630">
        <property type="entry name" value="SCO1-SenC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360065" evidence="2">
        <location>
            <begin position="23"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010996"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="204" mass="22072" checksum="DDCC1CE63E277E3D" modified="2016-01-20" version="1">MRGLFVRRAASVGLALAGLLLAACGTGTEKEFTGSRLDQPYDTADIALTDTSGRPYSLVADTDKPLTLVFFGYTNCADYCPMVMNNLATAMNRLDDADRKQVDVVLVTTDPARDDEKAMRAYLDKYNKAFIGLTGELDQVIELGNSLHVYVNDGKKLPTGGRDLGGHSTITLAIDGSNRAIALWNQETSSTEFAADLHTLLTED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI80</accession>
    <name>A0A0Q8VI80_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08355</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895497.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54065">
        <property type="protein sequence ID" value="KRC54065"/>
        <property type="gene ID" value="ASE19_08355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020459">
        <property type="entry name" value="AMP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00154">
        <property type="entry name" value="AMPBINDING"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="8"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="387"/>
            <end position="462"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="482" mass="51696" checksum="41EBF9BB10E28B38" modified="2016-01-20" version="1">MTLESYVRETARRNPRSVAVRSAGLAMTYGELDALAETQAANLRDLGVGPGDRVVIWARKTPEAVGLMQATLRLGACYVPVADTNPHVRVRAIADDCAAVVVVSDLHAERSRGKTVSLTELAAPNGTPGPRHQNHPDDPAYILYTSGSTGAPKGVVLSHGNACSFVDWAVRAVELAPHDRLSNHAAFNFDLSVFDLYGAFCAGASVALVPSDLAYSPDELVRFLREERITVWYSVPSALAPALRAGAFSSDPPRLRACIVAGEAMPPSDVRLLHAALPDARIVNWYGPTETNVCTAHECVPEDLEGRSWLPIGTACAGDTVVLDPEPEGEIVVSGPTVMLGYWGRERHHGAYRTGDIGRRLASGDIEYAGRKDDMMKVRGHRVEPAELEAVIRQLPGVDDVVVLGLGVGLETSVHAVVASRAVGDSPSLLAVKRMCAEHLPPYMSVDAVHHRSTLPLTANGKIDRLTLSHQIRAAEEARDHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIE4</accession>
    <name>A0A0Q8VIE4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08540</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895528.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54096">
        <property type="protein sequence ID" value="KRC54096"/>
        <property type="gene ID" value="ASE19_08540"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="40"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="2">
        <location>
            <begin position="117"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="381" mass="39693" checksum="390D739D7B27FBC7" modified="2016-01-20" version="1">MPTPVRRVLGSPRLRILLALAVLAVLVLTVGFRDRERTDLVAWFPSTDGVYAGDEVRVLGVPVGKIDSIDPQNGKVRVAFHVDADVKIPKGAKAVIVAPSLVSSRYLQLTPRYDGGAQLADGATIALKDTAVPVEWDQIKDQLNGLAEALGPRGANKKGALSDLVDAGAAALDGQGTKINQTIADLSTAVGVLDDGADDAFSVVRNLQVFVAALAESDGQMAQFIRNLDAVSAMLADDKHLVRSALRNLSGAVGDVETFIRDNRKGLDTAVTRLSDLVQVVNKQQGDLAQILHVAPNALANLTESYHQGQNAVGVNLTGANIHSPGQLICGAIGGAAGADEAGAEKLCNRLLGDLLGKVVDNPQSQKLLDALLLLIAGGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIF3</accession>
    <name>A0A0Q8VIF3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Exopolyphosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04875</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894412.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55129">
        <property type="protein sequence ID" value="KRC55129"/>
        <property type="gene ID" value="ASE19_04875"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003695">
        <property type="entry name" value="Ppx_GppA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02541">
        <property type="entry name" value="Ppx-GppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ppx-GppA" evidence="1">
        <location>
            <begin position="30"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="306" mass="31682" checksum="9B8846EC6F0FCB14" modified="2016-01-20" version="1">MTDATIAAIDCGTNTIKLLVGNPAADPDGVRRESRMIRLGQGVDATGLLATEALDRAFAAIDEFAGIIREAGAERIRFCATSATRDAGNAAEFAEGVVARLGIAPEVLSGEEEARLAFDGAVRGIGHHVAGPVLVVDIGGGSTELILGDPATGPTAAHSMDIGSVRLHERHVRHDPVDVVEIAAIVTDIDAALADCPVDPAAAATVILVAGTNTTMAAGVLDLPVYDRTLIHGRELAVADVQRLVGRLLGMTVEQRRGLGWMHPGRADVIDAGALIVSRVLGDLAVPTVTVAETDILDGIAWSLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIX5</accession>
    <name>A0A0Q8VIX5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05235</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894402.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55139">
        <property type="protein sequence ID" value="KRC55139"/>
        <property type="gene ID" value="ASE19_05235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="989319at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045063">
        <property type="entry name" value="Dynamin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005662">
        <property type="entry name" value="GTP-bd_Era"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42698">
        <property type="entry name" value="PTHR42698"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00350">
        <property type="entry name" value="Dynamin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Dynamin_N" evidence="1">
        <location>
            <begin position="55"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="564" mass="60366" checksum="1342C7B64EB49C1B" modified="2016-01-20" version="1">MLTEVVRLHGSLKAAPLPLDLPGVSALRVGRDHIIEQLEDYIIPRLTEIEAPMLVVVGGSTGAGKSTLVNTIVGHKVTTPGLLRPTTRSPVLVHHPDDVRWFGADRLLPELSRVSQATNDQSAIQLVASAQVPRGLAILDAPDVDSVDERNRELATQLLAAADLWLFVTSAARYSDQVPWDHLKVAVDRNTAVALVLSRTPAEDVQTVSVHLARMMAARGLKDSPLFAVAQGTVTDDGLLPASYAGEIRAWLEALAADAAARRDVVNQTVAGAVRTVTRKAFPIADAAALQVGAVGGLLAAADKVYDDTEAALVAAGADGTLLRGDLLARWQEFVGSGELVRSLEAKVGFVRERLVNAIKGKPQQAERVALAVEMALEALVADHAERAAETASREWRTQEYGEALLASTTDDLTRAGRGLRSRTEQEVRGWLDELQEFVRHEAGDARHSARFLALGVRGLSVTLAVVALAGDQPRGQAAESVRLGRSLLETILGDAATTRVIDQARGTLTRRLTALMGAERARYLAPAAQWELKPDAADQLRQAARRVDDLRFAAAKKGTGGHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIZ0</accession>
    <name>A0A0Q8VIZ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_24005</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894022.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57388">
        <property type="protein sequence ID" value="KRC57388"/>
        <property type="gene ID" value="ASE19_24005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1374721at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003812">
        <property type="entry name" value="Fido"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51459">
        <property type="entry name" value="FIDO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fido" evidence="1">
        <location>
            <begin position="96"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="242" mass="25178" checksum="7E491623D6F37962" modified="2016-01-20" version="1">MSSDPHAWLIPLEGVPSGFAGARDGIDVVLRDRGLRRTSPELTGESLLRGAHASAVLEGSTSTLAQVRAGEGDEIAADAVRLSTELLSLVPVLRRQPLQAFARLHTLAARGVLPDELLGRPRDGESAASLRAIAELATAPTEAPALAVAAVVHAELVAAAPFGSHNGIVARAAERLLLAVKGVDEKSLVVPEAAHLALRPEYESNLRGWASGGPAGRHAWLLYATEAYAAAAEASPLVRDAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIZ9</accession>
    <name>A0A0Q8VIZ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_07070</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895274.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53842">
        <property type="protein sequence ID" value="KRC53842"/>
        <property type="gene ID" value="ASE19_07070"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360078" evidence="3">
        <location>
            <begin position="32"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="199"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="116"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="227" mass="22838" checksum="27EFA3BC39E92431" modified="2016-01-20" version="1">MNTTTRTALRLLIATPLAASAIAFGGGVAHADVNPNGPVVIAQPDAPKGPGDIANPTPTPQPDPPAPQPQGPGDIAQPDKGDDPKPQPNPQGPGDIKNPNGGGDPEPNPHGPGDITNPEDGDDPKPDGPDDITNPVDGDKPDQPEDNPAEDADLDTDFGDGVDVANGGGLIADTSDVEVPSRIDAGAASADTQDEQGMSLVWVLAGGGVVTAAGSVLARQRLARRTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ65</accession>
    <name>A0A0Q8VJ65_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SCP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_24085</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57403">
        <property type="protein sequence ID" value="KRC57403"/>
        <property type="gene ID" value="ASE19_24085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.33.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014044">
        <property type="entry name" value="CAP_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035940">
        <property type="entry name" value="CAP_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00188">
        <property type="entry name" value="CAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55797">
        <property type="entry name" value="SSF55797"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360091" description="SCP domain-containing protein" evidence="1">
        <location>
            <begin position="30"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="domain" description="SCP" evidence="2">
        <location>
            <begin position="57"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="177" mass="18776" checksum="7C0E16A5B2B6D5F0" modified="2016-01-20" version="1">MMSRVRLGSPLAVALLGLVLVLPGTLSTATTSGPAAVVPVSGVPRTTVVSTLESDVLKAVNGRRVRAGCRPLQLNAALRTSARRHSITMARRGVLSHRLSGESTLQARIRAAGYTGATMVGEVIASGARSSDTVVAMWMQSSLHRKILLNCRFVHVGAGVVRSSTGRPWWTIDLARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJM9</accession>
    <name>A0A0Q8VJM9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">ABC2_membrane domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_23460</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC-2 integral membrane protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893926.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57720">
        <property type="protein sequence ID" value="KRC57720"/>
        <property type="gene ID" value="ASE19_23460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1552415at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC_2_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006648">
        <property type="entry name" value="DrrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="38"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="68"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="115"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="149"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="183"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="234"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="domain" description="ABC2_membrane" evidence="8">
        <location>
            <begin position="23"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC57720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="262" mass="28029" checksum="215073D70A57A2B5" modified="2016-01-20" version="1">MTTTTTYDPSARRVPPMGGFNGTVLAIELRRMLRNRRTIVFTLLFPGAMLLAFGGQSGWEERVGSGNVAAYILASMALYGAALTAAAGGSMVALERSLGWSRQLRLTPLHPVVYILMKALVALVMGALAIAAVNVVGALQGKAQMPTHVWIECAVVTLFCTLTFAALGVFVGYVVPGENAMQILGPGLALLSFLGGVFVPLDQYADTVRQVAHWTPMYGVAEIARSPLTHELPWYAVVNAVAWFALFVAGAAWRMSKDTARV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK53</accession>
    <name>A0A0Q8VK53_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14250</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897008.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53495">
        <property type="protein sequence ID" value="KRC53495"/>
        <property type="gene ID" value="ASE19_14250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="14"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="198" mass="21664" checksum="4A5658A6CB05A8B0" modified="2016-01-20" version="1">MPRITAPTIAEHVATQEAAVVAAARRLFVERGVAAVSIGDIATEVGLRRTSLYRYFPTKAHILQRWFDLEMDPLIERSLAVTGEYDDPAVALADWLDVQLDFITDEAHTSLVDATASATDLPPEVLAHFGERHRELYATLDGLLRHAARPAPAPALRRVRAQLIAGLLRSSADLLARGVRHADVRRELHRAATAVAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKB8</accession>
    <name>A0A0Q8VKB8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14625</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896943.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53559">
        <property type="protein sequence ID" value="KRC53559"/>
        <property type="gene ID" value="ASE19_14625"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="128" mass="13168" checksum="5BB80909E6FC8305" modified="2016-01-20" version="1">MSAPTRPSRTAAALAAGLALCQFGFVLTGDHPSMTAGVLAPLTLLAALALFRVNCLETRLAVVAAAAAPLLLTSLSATIGLPGQHPHTSVGGVLVGWVLPFAVLVAIDADRRARTRRTAPPLTHPYAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKI3</accession>
    <name>A0A0Q8VKI3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Cystathionine beta-synthase</fullName>
            <ecNumber evidence="5">4.2.1.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Beta-thionase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Serine sulfhydrase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">ASE19_04815</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-homocysteine + L-serine = H2O + L,L-cystathionine</text>
            <dbReference type="Rhea" id="RHEA:10112"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:58161"/>
            <dbReference type="ChEBI" id="CHEBI:58199"/>
            <dbReference type="EC" id="4.2.1.22"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-cysteine biosynthesis; L-cysteine from L-homocysteine and L-serine: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the cysteine synthase/cystathionine beta-synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.22" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894284.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54797">
        <property type="protein sequence ID" value="KRC54797"/>
        <property type="gene ID" value="ASE19_04815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1677960at2"/>
    <dbReference type="UniPathway" id="UPA00136">
        <property type="reaction ID" value="UER00201"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004122">
        <property type="term" value="F:cystathionine beta-synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006535">
        <property type="term" value="P:cysteine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019343">
        <property type="term" value="P:cysteine biosynthetic process via cystathionine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04608">
        <property type="entry name" value="CBS_pair_CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046353">
        <property type="entry name" value="CBS_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005857">
        <property type="entry name" value="Cysta_beta_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001216">
        <property type="entry name" value="P-phosphate_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01137">
        <property type="entry name" value="cysta_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00901">
        <property type="entry name" value="CYS_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 12" id="KW-0129">CBS domain</keyword>
    <keyword evidence="8" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="14">
        <location>
            <begin position="341"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="142"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00026192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00030337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00031579"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC54797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="461" mass="49097" checksum="36E339E7DA32FDF8" modified="2016-01-20" version="1">MEYVESLLELIGNTPLVRLNRSLDLPADGPLVLAKVEYLNPGGSVKDRIATRMIEAAEESGALKPGGTIVEPTSGNTGVGLAMVAQQKGYHCIFVCPDKVSEDKRNVLKAYGAEVVVCPTAVAPEHPDSYYNVSDRLASQPGAWKPDQYSNPHNPRSHYEETGPELWRQTEGRITHFVAGVGTGGTISGIGRYLKEQNAEVQVVGADPAGSVYSGGTGRPYLVEGVGEDFWPETYDREIADRIIEVSDADSFAFTRRLAREEAMLVGGSSGMAAYAARQLAQELAAEGRNDAVIVVLLPDSGRGYLSKVFNDDWLAQYGFSNGQAQPTRSIGEVLSHKTGGLPALVHTHPNETIAEAVGILQEYGVSQMPVVRAEPPIVAAEVAGSVSERALLDALFTGKARLSDAVEDHMSAALPTIGSTEEATAAVPLLESADAVLVHEDGKPVGVLTRHDLLSFLARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKM8</accession>
    <name>A0A0Q8VKM8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Nitrate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_12540</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. Nitrate/nitrite porter (TC 2.A.1.8) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53655">
        <property type="protein sequence ID" value="KRC53655"/>
        <property type="gene ID" value="ASE19_12540"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015112">
        <property type="term" value="F:nitrate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd17341">
        <property type="entry name" value="MFS_NRT2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044772">
        <property type="entry name" value="NO3_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23515">
        <property type="entry name" value="PTHR23515"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="24"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="60"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="90"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="116"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="162"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="196"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="236"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="277"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="307"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="371"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="429"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="464"/>
            <end position="484"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="499" mass="53180" checksum="5A4D7CD74C7B3FB7" modified="2016-01-20" version="1">MDDWRPEDPEFWESTGAPIAKRNLIWSIFAEHLGFSVWLIWSVSSAFLVAQGFTFTPQQLFFLIAIPNLVGALIRVPYTLAVGKFGGRNWTMVSAGLLLIPTLSFAYFVTQPDTPYWAFCVIAATAGFGGGNFASSMANINFFYPARLKGSALGLNAAGGNLGVAIIQFFLPVIVGGAGIFGLVKASEGGIHLERAAWVYAGLAVVAVLAAFFFMDNLSNAKTDTKQQLSVLKHKHTWVMSILYIGTFGSFIGYSAAMPLLIKLNFWRQPVPAVHGIGINFAFYAFLGALVGSVARPLGGYLADRFGGARVTVCAFAGLVLGTLGILFTLSQLQELPPPPDKAKLAEIAANPAAFQFPDAVRAAVDSNADVFPFFLAIFLFVFACTGIGNGSTYKMIPAIFRKDAVTATGEGTPERELAVLDATKKSSAAVGIIGAVGALGGFLIPITFNSPWVTAPLDATKSAFTIFTVFYVACLVLTFAVYLRKRTGAKADTGYVGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKP4</accession>
    <name>A0A0Q8VKP4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13190</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53671">
        <property type="protein sequence ID" value="KRC53671"/>
        <property type="gene ID" value="ASE19_13190"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002397">
        <property type="entry name" value="Cyt_P450_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00359">
        <property type="entry name" value="BP450"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0349">Heme</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="442" mass="48237" checksum="C4B4011EB5A8E78C" modified="2016-01-20" version="1">MRRRGRVLADTPRSFAAWTLAHGLQRALIQRGARKGDLISRMVMDPALRLDPYPAYEELRARGAVSANGLISASVDHAVCNEVLRSDAFGTAGGQGELPKPLQWLHHRVIDPDTLGPVDPPSMLAVDPPLHTRYRKQVARAFTARKVGRMGDRVDSVAAELLDELAGSTGFDLIDAYASQLPVTVIADLLGVPASDRERLLVLGNEAAVTLDPGLSWKQFRRAEVALREMHTWFRGHVEQLTANPGDDLISQLVQLDGPDRLDPVELHQVGLLVLAAGFETTVNLIGNAVAMLDGHPDQLRWLQENPDGWGNAVDEVLRHQPPVQLTLRIALRETEVAGKTFLPGHGILLYVGGANRDPAVFTDPASFDVTRPNADQHLSFSAGVHYCLGASLARLEAAVALRALYERFPDLHVSGRGERRPTRVLRGYERLPVATGVPVDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL62</accession>
    <name>A0A0Q8VL62_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06920</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53815">
        <property type="protein sequence ID" value="KRC53815"/>
        <property type="gene ID" value="ASE19_06920"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002514">
        <property type="entry name" value="Transposase_8"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01527">
        <property type="entry name" value="HTH_Tnp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="58"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="97" mass="10965" checksum="660760257B3DA978" modified="2016-01-20" version="1">MPKAFPEEFREDVIRVYRDSDASLAQVAKDFGISPSCLKRWITIDDRRSATPSHAARAANESDALREANKRIKLLEQENEVLRRAAAYLSQAHLPGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLL9</accession>
    <name>A0A0Q8VLL9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07635</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53943">
        <property type="protein sequence ID" value="KRC53943"/>
        <property type="gene ID" value="ASE19_07635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2123783at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="26"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="294" mass="32402" checksum="CF60C4343062A0A6" modified="2016-01-20" version="1">MLMTVGSSMALFAPFYFLTRSLDHHLDQLEERTAEQVEQVRAETADQVEQVRTEAAENATALTEQVAALRADVDQRLSDVNSEVQARLAAQSEATGAAFAALRSDASREAVWEALNRAGRQGLVTYDRPPRVAVRGSSPRLYVSFAVDGASVLPLRIRIEEINGRALATVFWPESASAVDVLVNLGTALAQHTPASFDVAALFSGLADLLEVARADHDQRKAIELCPPQWVVCDWGVVAYDQPGPYGVNLKALRHQYEHVSQKPWLDADAWDRAYEAALQLFPKETMRPPAPRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLR6</accession>
    <name>A0A0Q8VLR6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">DNA integrity scanning protein DisA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Cyclic di-AMP synthase</fullName>
            <shortName evidence="10">c-di-AMP synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Diadenylate cyclase</fullName>
            <ecNumber evidence="10">2.7.7.85</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">disA</name>
        <name evidence="12" type="ORF">ASE19_07905</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP likely acts as a signaling molecule that may couple DNA integrity with a cellular process.</text>
    </comment>
    <comment type="function">
        <text evidence="10">Participates in a DNA-damage check-point. DisA forms globular foci that rapidly scan along the chromosomes searching for lesions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>2 ATP = 3',3'-c-di-AMP + 2 diphosphate</text>
            <dbReference type="Rhea" id="RHEA:35655"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:71500"/>
            <dbReference type="EC" id="2.7.7.85"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homooctamer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the DisA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.85" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895423.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53991">
        <property type="protein sequence ID" value="KRC53991"/>
        <property type="gene ID" value="ASE19_07905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1139866at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106408">
        <property type="term" value="F:diadenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019932">
        <property type="term" value="P:second-messenger-mediated signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01438">
        <property type="entry name" value="DisA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038331">
        <property type="entry name" value="DisA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036888">
        <property type="entry name" value="DNA_integrity_DisA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018906">
        <property type="entry name" value="DNA_integrity_scan_DisA_link"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003390">
        <property type="entry name" value="DNA_integrity_scan_DisA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023763">
        <property type="entry name" value="DNA_integrity_scanning_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02457">
        <property type="entry name" value="DAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10635">
        <property type="entry name" value="DisA-linker"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143597">
        <property type="entry name" value="SSF143597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51794">
        <property type="entry name" value="DAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 10" id="KW-0227">DNA damage</keyword>
    <keyword evidence="9 10" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8 10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 10" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DAC" evidence="11">
        <location>
            <begin position="6"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="104"/>
            <end position="108"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC53991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="357" mass="38855" checksum="9CB35F1D9AAE3CF8" modified="2016-01-20" version="1">MVASADPRLRETLASIAPGTSLRDGLERILRGRTGALIVLGQDKLVETLCTGGFELDVPFTATALRELAKMDGAIIVDTGANRIIRAAVHLMPDQTIPSEETGTRHRTADRVAKQTGHPVISVSQSMQIIAAYVGDTRHVLEDSGQILSRANQALATLERYKLRLDEVSSTLSALEIEDLVTVRDVAVVAQRLEMVTRIAREIEDYVLELGTDGRLLALQLEELITGVDTERELVIRDYVPSRRRSRDPLELLGKLELLSATDLVDPSAVAKVLGIGTGEHLDGAVAPRGYRLLTKVPRLPSNVVEGLVDHFGTLQKLLSAGIDDLQAVEGVGELRARSVREGLSRLAESTILERYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM46</accession>
    <name>A0A0Q8VM46_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04755</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894295.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54786">
        <property type="protein sequence ID" value="KRC54786"/>
        <property type="gene ID" value="ASE19_04755"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042171">
        <property type="entry name" value="Acyl-CoA_hotdog"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="28576" checksum="93D13595FC896D23" modified="2016-01-20" version="1">MSHLLDDAVASEPLGNGVHRVQVTADWNTANQTPNGGYVLALLQHAVLQESAHPDALSISITYFRPALPGPADIRVREVRKGRRVSTYDAVLVQGEKEVAHAVVSTHDWDAAGTTEHTPHTAPAVPRPEECADASVLIPGGMVPILDRYSYRAPVVAGWLRGEPSGVTESICWIRAVDGRPVDALLAGAMTDAFPPVTAEIGHLASATIQLTVHYRRRPETVWALGHVTTRHVIAGYHDEDVELWDEQGRLIAQSRQLAILAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMW6</accession>
    <name>A0A0Q8VMW6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glyoxalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06275</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894451.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55042">
        <property type="protein sequence ID" value="KRC55042"/>
        <property type="gene ID" value="ASE19_06275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1791609at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="212" mass="22450" checksum="587F801D1D2F6D3B" modified="2016-01-20" version="1">MTVTIDALVVADQPEAWQAAGFAVGDDGRCRIGSVAVRLVGGEQGKGVIGWSLRGIPADRTDVDGVPTTLSTAPPPSAEPPLHPNGTTHVDHVVLLSPDLDRTTTALADLGLEARRERDGELWGAPMRQVFYRLGDVILELVGAPGVAGEGPATLWGVTYAVADIDATAELLGERTSRVKDAVQPGRRITTLRHRELGMSVRTAFISPHVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNF7</accession>
    <name>A0A0Q8VNF7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Arginine biosynthesis bifunctional protein ArgJ</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="7">Glutamate N-acetyltransferase</fullName>
                <ecNumber evidence="7">2.3.1.35</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="7">Ornithine acetyltransferase</fullName>
                <shortName evidence="7">OATase</shortName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="7">Ornithine transacetylase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="7">Amino-acid acetyltransferase</fullName>
                <ecNumber evidence="7">2.3.1.1</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="7">N-acetylglutamate synthase</fullName>
                <shortName evidence="7">AGSase</shortName>
            </alternativeName>
        </domain>
        <component>
            <recommendedName>
                <fullName evidence="7">Arginine biosynthesis bifunctional protein ArgJ alpha chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="7">Arginine biosynthesis bifunctional protein ArgJ beta chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name evidence="7" type="primary">argJ</name>
        <name evidence="8" type="ORF">ASE19_23300</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>L-glutamate + N(2)-acetyl-L-ornithine = L-ornithine + N-acetyl-L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:15349"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:44337"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
            <dbReference type="EC" id="2.3.1.35"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>acetyl-CoA + L-glutamate = CoA + H(+) + N-acetyl-L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24292"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:44337"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-arginine biosynthesis; L-ornithine and N-acetyl-L-glutamate from L-glutamate and N(2)-acetyl-L-ornithine (cyclic): step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 7">Heterotetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="7">Some bacteria possess a monofunctional ArgJ, i.e., capable of catalyzing only the fifth step of the arginine biosynthetic pathway.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the ArgJ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.35" evidence="7"/>
    <dbReference type="EC" id="2.3.1.1" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892507.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58980">
        <property type="protein sequence ID" value="KRC58980"/>
        <property type="gene ID" value="ASE19_23300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1083409at2"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004042">
        <property type="term" value="F:acetyl-CoA:L-glutamate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004358">
        <property type="term" value="F:glutamate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103045">
        <property type="term" value="F:methione N-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02152">
        <property type="entry name" value="OAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01106">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002813">
        <property type="entry name" value="Arg_biosynth_ArgJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016117">
        <property type="entry name" value="ArgJ-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042195">
        <property type="entry name" value="ArgJ_beta_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23100">
        <property type="entry name" value="PTHR23100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01960">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56266">
        <property type="entry name" value="SSF56266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00120">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_5023456079" description="Arginine biosynthesis bifunctional protein ArgJ alpha chain" evidence="7">
        <location>
            <begin position="1"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5023456080" description="Arginine biosynthesis bifunctional protein ArgJ beta chain" evidence="7">
        <location>
            <begin position="179"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="7">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="259"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="378"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="383"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole" evidence="7">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <feature type="site" description="Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole" evidence="7">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <feature type="site" description="Cleavage; by autolysis" evidence="7">
        <location>
            <begin position="178"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC58980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="383" mass="39317" checksum="C9AB1000E17BC5A9" modified="2016-01-20" version="1">MSVTHPAGFAAAGAAIGLKASGNKDFALVVNQGPTADSATVFTSNRCKANPVLWSEQVVKDGVVRAVVLNSGGANCYTGPDGFLTTHQVAEEVGKVLDIGAGDVVVCSTGLIGLANDRQKLLDGVHVLHAQLSADGGNDAAEAIMTTDTVSKQVVVEGDGWSIGGMAKGAGMLAPALATMLVVITTDAVVPASELDKALRAATRVSFDRLDSDGCQSTNDTVTLMASGASGVTPTTEQFTAALTELCTDLAQQLLADAEGADHEIAITAVNAATEDEAVEVGRSVARSNLFKAAVFGKDPNWGRVLASIGTTSAAFDPANLDVAMNGVWVCRNSTPAEDPALVDLSDRKVTVTIDLKAGDAEATVWTNDLTHAYVHENSAYSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP37</accession>
    <name>A0A0Q8VP37_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Septum site determining protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23990</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894019.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57385">
        <property type="protein sequence ID" value="KRC57385"/>
        <property type="gene ID" value="ASE19_23990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1646147at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022521">
        <property type="entry name" value="CHP03815_CpaE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03815">
        <property type="entry name" value="CpaE_hom_Actino"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="369" mass="38997" checksum="858E9AB0DB37D9DB" modified="2016-01-20" version="1">MTRHTTPARRSVPRPVDAPVLVVTADDSLLAELLPLAAAADVAPTVARDPLTALRSWNRAPVVLVGADLADEMLRHAPEPRPRCLVVSAVHAPDELFRTTLRLGAEQVVELPISAGWLVEQLADLTERQPGRARVIGVIGGSGGAGATTFACALGQWAARSGPAVVIDCDPQGPGLDRMLGVERRDGFRWDALCQTTGRLSARALREALPRSGSLGVLSWYVDGRVQSLQAFAAREALSAARRGHAVVVVDLPRSPDPLVDEIAARCDLLLVMTVASVVGVAGAARMRARFAEHADAAVVLRGEAFTPEEVRRAVGLPVVVQMRDQRGLSEAVDLGLGPLRTMRGPLARAAARILGDVVVPHGDEQAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPR8</accession>
    <name>A0A0Q8VPR8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_05275</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894210.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54871">
        <property type="protein sequence ID" value="KRC54871"/>
        <property type="gene ID" value="ASE19_05275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1464674at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="24"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="58"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="89"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="153"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="195"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="20"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="223" mass="23545" checksum="49A9DEE968456E76" modified="2016-01-20" version="1">MIALLGTPWPDVPDLMVPALGETFRMVAVVMAIVVALGGPLGLLIFNTSPLGLFPNRAVHVSISWIANLGRSLPFLVLMAAVIPVTKLVFGTTIGFKAALIPMSIAGIAFFARLTENAVREVPRDLLDVGLAGGSSRSQIITSIQLREAMPGLAAGLTLNVIAMIEYSAIAGAIGSGGVGYLAVNYGYRRFDDNIMIACIVLLVVLVQLIQFSGDRVVRALSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ07</accession>
    <name>A0A0Q8VQ07_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MBL fold metallo-hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896824.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59516">
        <property type="protein sequence ID" value="KRC59516"/>
        <property type="gene ID" value="ASE19_00295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1581636at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="26"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="22224" checksum="2D738AA4BE2CA7EB" modified="2016-01-20" version="1">MAGPVRVDHAVSSGTFSLDGETFDVDNNIWVVGDDEECVVIDAPHSVDDIMAVVGDRRVKAIICTHAHDDHVRVAPALREKVVAPILLHPDDRPLWELTHGGPDDPDAVLWDLDLADGVEIPVAGTVLRVLHTPGHAPGAVCLHAPDLGCVFTGDTLFHGGPGATGRSYSDRPTLEGSIRAALFALPEETVVHTGHGEDTTIGAEAAALGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ22</accession>
    <name>A0A0Q8VQ22_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L13</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rplM</name>
        <name evidence="5" type="ORF">ASE19_00390</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the universal ribosomal protein uL13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896808.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59532">
        <property type="protein sequence ID" value="KRC59532"/>
        <property type="gene ID" value="ASE19_00390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1822215at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00392">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01366">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005822">
        <property type="entry name" value="Ribosomal_L13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005823">
        <property type="entry name" value="Ribosomal_L13_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036899">
        <property type="entry name" value="Ribosomal_L13_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11545">
        <property type="entry name" value="PTHR11545"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00572">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002181">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52161">
        <property type="entry name" value="SSF52161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01066">
        <property type="entry name" value="rplM_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="147" mass="16103" checksum="00606751F20B3B6F" modified="2016-01-20" version="1">MRTYAPKPGDVERAWLVIDATDVVLGRLAVTAANLLRGKHKPIFAPNADTGDFVVIINADKVALSGNKRADKMVYRHSGFPGGLTATPIGEVIEKDARKAVEKAVWGMLPKNRLGRQMIKKLKVYNGPAHPHQAQQAVPFEIKQISQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ39</accession>
    <name>A0A0Q8VQ39_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">tRNA pseudouridine synthase A</fullName>
            <ecNumber evidence="4">5.4.99.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">tRNA pseudouridine(38-40) synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">tRNA pseudouridylate synthase I</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">tRNA-uridine isomerase I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">truA</name>
        <name evidence="9" type="ORF">ASE19_00495</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4 7">
            <text>uridine(38/39/40) in tRNA = pseudouridine(38/39/40) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:22376"/>
            <dbReference type="Rhea" id="RHEA-COMP:10085"/>
            <dbReference type="Rhea" id="RHEA-COMP:10087"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="EC" id="5.4.99.12"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 7">Belongs to the tRNA pseudouridine synthase TruA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.12" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896792.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59548">
        <property type="protein sequence ID" value="KRC59548"/>
        <property type="gene ID" value="ASE19_00495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1075262at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106029">
        <property type="term" value="F:tRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031119">
        <property type="term" value="P:tRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02570">
        <property type="entry name" value="PseudoU_synth_EcTruA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.660">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00171">
        <property type="entry name" value="TruA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001406">
        <property type="entry name" value="PsdUridine_synth_TruA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020097">
        <property type="entry name" value="PsdUridine_synth_TruA_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020095">
        <property type="entry name" value="PsdUridine_synth_TruA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020094">
        <property type="entry name" value="TruA/RsuA/RluB/E/F_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11142">
        <property type="entry name" value="PTHR11142"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01416">
        <property type="entry name" value="PseudoU_synth_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001430">
        <property type="entry name" value="tRNA_psdUrid_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00071">
        <property type="entry name" value="hisT_truA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 7" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="PseudoU_synth_1" evidence="8">
        <location>
            <begin position="158"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4 5">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 6">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001430-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR001430-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="282" mass="30886" checksum="712922F6C94552E3" modified="2016-01-20" version="1">MRLRIDLAYDGSDFRGWAAQPALRTVQTELTSALTTVLRLPEGSLLVTCAGRTDSGVHARGQVAHVDVPDDEETGSKTAARQLTQLDVLARRVNGVLGKDVRVRRISAAPEGFDARFAALWRRYAYRIIDDPTQVDPLTRNHVLAWPRPLDEAAMNEAAASLVGLNDFAAFCKHREGATTIRTLLEFGWTRTADGMLVGHVQADAFCHSMVRALVGCMIAVGEGRKDPAWAHEILTGRRRDPGAVVMPAHGLTLEEVAYPDDAELASRVEQTSARRTPLEDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQI3</accession>
    <name>A0A0Q8VQI3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transglycosylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_01200</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the transglycosylase family. Rpf subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896669.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59672">
        <property type="protein sequence ID" value="KRC59672"/>
        <property type="gene ID" value="ASE19_01200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2027419at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd13925">
        <property type="entry name" value="RPF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007137">
        <property type="entry name" value="DUF348"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011098">
        <property type="entry name" value="G5_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010618">
        <property type="entry name" value="RPF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03990">
        <property type="entry name" value="DUF348"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07501">
        <property type="entry name" value="G5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06737">
        <property type="entry name" value="Transglycosylas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01208">
        <property type="entry name" value="G5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51109">
        <property type="entry name" value="G5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="24"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="domain" description="G5" evidence="4">
        <location>
            <begin position="217"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010830"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="386" mass="41201" checksum="EB39B03BFF2EB6AF" modified="2016-01-20" version="1">MRVARPHLAPSLKGTVQKLTQSRVALTATIAGVLLAVATVTFGYSSLTTEVTLAVDGQERSVTTFGDTVQDVLDAEGIELSSRDLVQPGVDETIEAGDRISVRYSRPIELTVDGKTSTHWVTATDVQGALAQIGVVYADSRLSTSRGADIDRGGAEIDVVTPKKLVFKLAGKKAITRTVPALTVEDALAEVGVELDAQDKVRPARSAKVEDGDTIVFTDIETRRRSVEDEVVPAPVRRIEDDSMYEGESKVVTEGVDGVRDVTYRVIVRNGDVVRRIVLTQDVSKAPRAEIVHVGTKTVTANFAGGNTVWDRLAQCESGGNWAINTGNGYYGGLQFNVGTWRAYGGSGYPHQASRETQIAIATKVRDASGGYGAWPGCAASLGLPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQU1</accession>
    <name>A0A0Q8VQU1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01785</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896565.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59774">
        <property type="protein sequence ID" value="KRC59774"/>
        <property type="gene ID" value="ASE19_01785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1172953at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="118"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="142"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="176"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="203"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="235" mass="26028" checksum="8E1779E254046F81" modified="2016-01-20" version="1">MYDVQPVLDRINEPSLPLLVFTAIAWATGFVQIVQAFRCGRRDRVPAAPIGMTAFLLAHDGTFALNADHWLNDVDVWYFSIFWVGMVISVGIELMLVRQYLALGQPLVAPDLPRWMFVGSYLLLQAFAFIGLWWLQSLLDDPLRLVSLAATQVVAVVFLVPWILARGDARGQSRAFAWATVLGPGGLALGLFPALSPELFDNAHFWALCASLVSLSVTYLLLLEHHLRRDALPGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR00</accession>
    <name>A0A0Q8VR00_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03410</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892883.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56865">
        <property type="protein sequence ID" value="KRC56865"/>
        <property type="gene ID" value="ASE19_03410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1836363at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360285" evidence="1">
        <location>
            <begin position="26"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="204" mass="21488" checksum="C88FA2CE9AE5E1D8" modified="2016-01-20" version="1">MSVSARLLVPLVALAALLTGVPATSAAPAPVSTAVSTAATVPTTRVVIRVADCEGCEVFLQQGLRSSWWSSRVHRVHDGRAVFVVPSRHTRGMSVGITGTWEATSPHPSGFQSIVTLRYRGIAAGTRVTRAVASSKRYGSACFPGTTAERLVVPIQARKVRVPGNGGPALSTLAWASPQTRTMAGTMERTYRGVFGAQDVVPCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUI9</accession>
    <name>A0A0Q8VUI9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Riboflavin biosynthesis protein</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="11">Riboflavin kinase</fullName>
                <ecNumber evidence="11">2.7.1.26</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="11">Flavokinase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="11">FMN adenylyltransferase</fullName>
                <ecNumber evidence="11">2.7.7.2</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="11">FAD pyrophosphorylase</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="11">FAD synthase</fullName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_02950</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2 11">
            <text>ATP + FMN + H(+) = diphosphate + FAD</text>
            <dbReference type="Rhea" id="RHEA:17237"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="EC" id="2.7.7.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + riboflavin = ADP + FMN + H(+)</text>
            <dbReference type="Rhea" id="RHEA:14357"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57986"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.26"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 11">Cofactor biosynthesis; FAD biosynthesis; FAD from FMN: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 11">Cofactor biosynthesis; FMN biosynthesis; FMN from riboflavin (ATP route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the ribF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.26" evidence="11"/>
    <dbReference type="EC" id="2.7.7.2" evidence="11"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892810.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56791">
        <property type="protein sequence ID" value="KRC56791"/>
        <property type="gene ID" value="ASE19_02950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1504821at2"/>
    <dbReference type="UniPathway" id="UPA00276">
        <property type="reaction ID" value="UER00406"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00277">
        <property type="reaction ID" value="UER00407"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003919">
        <property type="term" value="F:FMN adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008531">
        <property type="term" value="F:riboflavin kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006747">
        <property type="term" value="P:FAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009398">
        <property type="term" value="P:FMN biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02064">
        <property type="entry name" value="FAD_synthetase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015864">
        <property type="entry name" value="FAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023468">
        <property type="entry name" value="Riboflavin_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002606">
        <property type="entry name" value="Riboflavin_kinase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015865">
        <property type="entry name" value="Riboflavin_kinase_bac/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023465">
        <property type="entry name" value="Riboflavin_kinase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22749">
        <property type="entry name" value="PTHR22749"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06574">
        <property type="entry name" value="FAD_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01687">
        <property type="entry name" value="Flavokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004491">
        <property type="entry name" value="FAD_Synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00904">
        <property type="entry name" value="Flavokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82114">
        <property type="entry name" value="SSF82114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00083">
        <property type="entry name" value="ribF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9 11" id="KW-0274">FAD</keyword>
    <keyword evidence="5 11" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6 11" id="KW-0288">FMN</keyword>
    <keyword evidence="11 13" id="KW-0418">Kinase</keyword>
    <keyword evidence="8 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11 13" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11 13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Flavokinase" evidence="12">
        <location>
            <begin position="183"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRNR" id="PIRNR004491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC56791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="34172" checksum="2A442BF274918EE0" modified="2016-01-20" version="1">MRVWRDFSDVPADLGRTVVTIGNFDGMHLGHQHVVRRAREVAGEVGVDHVVAVTFDPHPIAVLRPEHAPPTLTTIDERLRLLGEAGVDDVLVIPFSREIASWTPAEFIQRILLDTLHVRAVVVGANFRFGNRAAGDCNLLREAGRDHDFVLEEVSLDGGPQVWSSTYVRTCLAAGDVTGAAEALGRSFTTRGVVVEGDKRGRELGYPTANVPVRPGAAAPADGVYAGRLTVLDGPDAGSTYPAAISVGTNPTFAGERERRVESYVLDRTDLQLYGHEVEVEFVERLRGMVRFDSIDDLLVAMSGDVARARTILAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUX2</accession>
    <name>A0A0Q8VUX2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alkylhydroperoxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03880</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892968.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56951">
        <property type="protein sequence ID" value="KRC56951"/>
        <property type="gene ID" value="ASE19_03880"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1925754at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051920">
        <property type="term" value="F:peroxiredoxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029032">
        <property type="entry name" value="AhpD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004675">
        <property type="entry name" value="AhpD_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003779">
        <property type="entry name" value="CMD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02627">
        <property type="entry name" value="CMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69118">
        <property type="entry name" value="SSF69118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00778">
        <property type="entry name" value="ahpD_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMD" evidence="1">
        <location>
            <begin position="26"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="124" mass="12790" checksum="F7E6493343A6DF4D" modified="2016-01-20" version="1">MTTSPHGKPVLDELSPLHRNLRRAIPDVYVGFGELSKAAFDDGALPRSTKELIALAIGVTEGCDGCIASHAQAAVRAGATKQEAAEAIGVAFLMHGGPATIHGARAYDAFCSFADALADTAQEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVH5</accession>
    <name>A0A0Q8VVH5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_00565</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896779.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59561">
        <property type="protein sequence ID" value="KRC59561"/>
        <property type="gene ID" value="ASE19_00565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1619224at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="88"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="121"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="162"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="277"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="84"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC59561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="308" mass="33930" checksum="4BEDC56B2B9F6B8B" modified="2016-01-20" version="1">MSTATAPARGKPVVSDRARAETRLGQKLVAPAIVLMLLVTAFPMLRALYLSTFDYALTAPDDREFVGLGNYLTALSDPLFWKTTGVTVLYMVVTVAVELVIGFVFAMVMHRVIFARGVIRTSILVPYGIITVVSGFAWQFAFSFQNGFVNGWLPFVGDDYNWFGQGSSAVVAIMVSEIWKTTPFMSLLLLAGLAQVSEDMIEAAKVDGATWTQRLTRVILPNMRAAIMVAVLFRALDAYRIFDNIFVMTNGAVNTESISFLTYRQTIEQFQLGMGSALSVLLFLSVLVVAFGIVKLFRVDLAQARQES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXA9</accession>
    <name>A0A0Q8VXA9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_22815</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892586.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58898">
        <property type="protein sequence ID" value="KRC58898"/>
        <property type="gene ID" value="ASE19_22815"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="63"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="104"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="177"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="219"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="263"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="330"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="376"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="404"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="447"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="471"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="652"/>
            <end position="680"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC58898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="680" mass="74415" checksum="3E684DE3A4EE2C39" modified="2016-01-20" version="1">MGVGDVSKRILLGRKLRSAQLGETLLPKRIALPVFASDALSSVAYAPDEVFIMLAIAGASQYIWSWKIAIAVALVMAAVIASYRQTVHAYPSGGGDYEVATVNLGRTAGITVASALLVDYVLTVAVSISSGANYAASALPAFQEHEATVAVVMVVLLTAMNLRGIRESGSFFAVPTYLFMFAILGMCAYGFLQMALGNLPMAESSNLDITPKEGWEDPLTTFGLIVLLARAFSSGCAALTGVEAISNGVPAFKRPKSKNAATTLLLLGLIAISMMLSVIVLAKQMGLKYVDPHELERLTRGGQPLPGDYDQHAVIAQIAQAVFHDFSPGFYFVVTVTGIILVLAANTAFNGFPVLGSILAKDGLAPRALGARGDRLAYSNGIVFLALMAIILIIAFDAETTKLIQLYIVGVFVSFNLSQLGMIRHWTRHLATERDPAERRKMVRSRTINAIGLSFTAVVLVVVLLTKFLAGAWITILAMGFFFVVMKSIKKHYDNVERELAADETDKALPTRVHAIVLVSKLHKPTLRALAFAKATRPNALEGVYVSVDEKETARLLEEWDDRNTGIPLKVLHSPYREIIRPIVEYATAIREANPRGVVAVYIPEYVVGRWWEQLLHNQTALRLKGRLLFTPGVMVTSVPYQLRSSEIAVEREEREEHRVRPGDLRRGRVDDERDRQIKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYJ7</accession>
    <name>A0A0Q8VYJ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01535</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896610.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59729">
        <property type="protein sequence ID" value="KRC59729"/>
        <property type="gene ID" value="ASE19_01535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1966659at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="114" mass="11849" checksum="60796C6CA6A3FE9B" modified="2016-01-20" version="1">MSPRTGLAAHRLALGLVAVLAPRFAGRLFGLDFAAHPVGAVLTRLMASRNILLGVGLLLDDSERMVRLNRAVDAIDLATVSDETRRRAIPVRATVVGGLTAGSAALLGRAAAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMT6</accession>
    <name>A0A0Q8UMT6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20960</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896083.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46312">
        <property type="protein sequence ID" value="KRC46312"/>
        <property type="gene ID" value="ASE19_20960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1869225at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="21"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="328"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="451" mass="48058" checksum="449FDEBE565A82E3" modified="2016-01-20" version="1">MDTRLAELSRTIDPAELGRRIRVARVAAGMTQVQVAGEDITAAYLSRIEDGQRRPEALLLGRLAVRMGTTLEELLIGVSHDERAELQLGLDHAELALAGGDAPQALTRAEQLLARLERTADTELVRRARRIRASALEMTGDLDGAIMAFEDLVGEPIADAVWLKDLISLSRCYRDGGEPARAIEVGDRARALIVELGLEGLTEAIQLSVTVAAAYHVRGDLGEAMRVCKRALAEAEKYDSPIGKASAYWNASLIDAATHGATPQSLDLARKALALFELGDDNRNLAKLRGLVARLHLSTTPPEPQAALDIMAVAERELAVGGSAWDQALVHVNRGRALVLLGRLDEAVASAERALAESPAKASLLDAWAHVVLGQAAALDARPSDAREHYGRAIHALTAAGADREAAQLWFDLGTLLTDVGDTDGALQAFRNAGASTGLRVGESPTAHLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8US92</accession>
    <name>A0A0Q8US92_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase M19</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22075</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896275.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46505">
        <property type="protein sequence ID" value="KRC46505"/>
        <property type="gene ID" value="ASE19_22075"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1145595at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070573">
        <property type="term" value="F:metallodipeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01301">
        <property type="entry name" value="rDP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008257">
        <property type="entry name" value="Pept_M19"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10443">
        <property type="entry name" value="PTHR10443"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01244">
        <property type="entry name" value="Peptidase_M19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51365">
        <property type="entry name" value="RENAL_DIPEPTIDASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="397" mass="42492" checksum="9295244D78843A4D" modified="2016-01-20" version="1">MGSINRRRVKITGLSAVAVLVVLAVAFFSYAPGKIERMRNRVEPADLPSVTADTQRLHDSLAIVDLHSDTLMWDRDLLDRADRGHMDLPRLEDGNVALQVFSSVSKSPKGQNYDSNPTDAGDNITLLAFAQLQPPRTWRSLLQRSLYHAQKLRDAADDSDGALRLIRTRADLDELLADRAAGKDVTGALFSVEGLHNLEGDIDNLDELDDAGMRMAGFTHFFDNEVAGSMHGEDKGGLTDLGREVFAELEDRGIVVDIAHASHEAVADMLALATKPLVLSHGGVQATCDVNRNLTDAEIRGVAATGGVVGVGYWDAAVCDLTTDAVVDAIDHVVEVGGIETAALGSDFDGATTVGWDTSQLAAVTQELVDRGYDDGEIAAIMGGNSIRVLRAVLPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUG1</accession>
    <name>A0A0Q8UUG1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17965</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48808">
        <property type="protein sequence ID" value="KRC48808"/>
        <property type="gene ID" value="ASE19_17965"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024534">
        <property type="entry name" value="DUF2220"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024537">
        <property type="entry name" value="DUF3322"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09983">
        <property type="entry name" value="DUF2220"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11795">
        <property type="entry name" value="DUF3322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3322" evidence="2">
        <location>
            <begin position="17"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2220" evidence="1">
        <location>
            <begin position="177"/>
            <end position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="361" mass="39649" checksum="E4F927F43D011D94" modified="2016-01-20" version="1">MTGAVWAPEIALGSSGLTGRRLADAWEDIHPLRSEWMGWAATAGEGVEVVWRDATLYGSGQPLPATLRVADVDTAARLLQDGWPDRLDEARTRAARLAADFPGHADPAGMLRATRELPAVDFDLVVRAARWFADPHPAGLTARQVPVEGMGTKWLDRRASVVRRLAGLESLDLEPGRPSRVHLTYLDPDHLDSGGRRHDVATVGDVHTVAYRPSVVLISENRDTAQQFPRVAGGIAIEGDGNGPGAVPQLPWVRACPDVVYWGDMDVKGLEILAAFRGTGLRARSMFMDLTSYRRWERFGVDHDHDGARLGPRPVREVDLEPGERELYEALCSPDWTGHRRIEQERIPLADAAAVLRLGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUH3</accession>
    <name>A0A0Q8UUH3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Glutathione synthetase</fullName>
            <ecNumber evidence="10">6.3.2.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">GSH synthetase</fullName>
            <shortName evidence="10">GSH-S</shortName>
            <shortName evidence="10">GSHase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Glutathione synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">gshB</name>
        <name evidence="13" type="ORF">ASE19_21850</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + glutathione + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13557"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:58173"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="10">Sulfur metabolism; glutathione biosynthesis; glutathione from L-cysteine and L-glutamate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the prokaryotic GSH synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.3" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896236.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46467">
        <property type="protein sequence ID" value="KRC46467"/>
        <property type="gene ID" value="ASE19_21850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="878336at2"/>
    <dbReference type="UniPathway" id="UPA00142">
        <property type="reaction ID" value="UER00210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004363">
        <property type="term" value="F:glutathione synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00162">
        <property type="entry name" value="GSH_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006284">
        <property type="entry name" value="Glut_synth_pro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004218">
        <property type="entry name" value="GSHS_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004215">
        <property type="entry name" value="GSHS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21621:SF4">
        <property type="entry name" value="PTHR21621:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02955">
        <property type="entry name" value="GSH-S_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02951">
        <property type="entry name" value="GSH-S_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01380">
        <property type="entry name" value="glut_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 10" id="KW-0317">Glutathione biosynthesis</keyword>
    <keyword evidence="3 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0464">Manganese</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 10 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="12">
        <location>
            <begin position="144"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC46467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="341" mass="36635" checksum="DB0A88EE1445364B" modified="2016-01-20" version="1">MDSLPSPPSSPLDVLVVADPVPGLNPAHDTTIAIVEAAQHAGHRVWVTTASDLSVDGGRPAARCQSLRVLPCRLDQGRWIAPKDWFHLGDPEDLSLDAFQVVLMRTDPPVDQVYLRATYVLDLADPARTLVVNEPAGLRNVNEKFFSLQLPHLGPETLVTASVPIVLERVEAWGQAVLKPTDAMAGRGVLVLAQGDPNLVSILEQATNRGRDLVVVQRWIEGVVDGDRRIIVLDGRPLGAVRRVACGTDFRCNMATGAVTVADGLTEDDRRICAELAPLLRRNGISFAGIDVIGGLLTEVNVTSPTGVREIDALSGTRLGADVVDWIESTVALRQMAGVEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUR9</accession>
    <name>A0A0Q8UUR9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 6">Histidine ammonia-lyase</fullName>
            <ecNumber evidence="3 6">4.3.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_18785</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>L-histidine = NH4(+) + trans-urocanate</text>
            <dbReference type="Rhea" id="RHEA:21232"/>
            <dbReference type="ChEBI" id="CHEBI:17771"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57595"/>
            <dbReference type="EC" id="4.3.1.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 6">Amino-acid degradation; L-histidine degradation into L-glutamate; N-formimidoyl-L-glutamate from L-histidine: step 1/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PAL/histidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.1.3" evidence="3 6"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893352.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48950">
        <property type="protein sequence ID" value="KRC48950"/>
        <property type="gene ID" value="ASE19_18785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="715502at2"/>
    <dbReference type="UniPathway" id="UPA00379">
        <property type="reaction ID" value="UER00549"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004397">
        <property type="term" value="F:histidine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019556">
        <property type="term" value="P:histidine catabolic process to glutamate and formamide"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019557">
        <property type="term" value="P:histidine catabolic process to glutamate and formate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00332">
        <property type="entry name" value="PAL-HAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001106">
        <property type="entry name" value="Aromatic_Lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005921">
        <property type="entry name" value="HutH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022313">
        <property type="entry name" value="Phe/His_NH3-lyase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10362">
        <property type="entry name" value="PTHR10362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00221">
        <property type="entry name" value="Lyase_aromatic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01225">
        <property type="entry name" value="hutH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00488">
        <property type="entry name" value="PAL_HISTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0369">Histidine metabolism</keyword>
    <keyword evidence="5 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC48950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="514" mass="53322" checksum="C3291DDF150311EC" modified="2016-01-20" version="1">MEKVTIGTGAVSFEDVVAVARHGAGVELSGEALAAIDKARAVIEDLAASPTPHYGVSTGFGALATRHIAPELRAQLQRSLVRSHAAGSGPEVEREVVRGLMLLRLSTLATGRTGVRRETAELLAGLLTHGITPVVHEYGSLGCSGDLAPLAHCALALMGEGPVRDASGELTDAATALAAAGLVPVELQEKEGLALINGTDGMLGMLVLAIHDLTDLLKVADISAAMSVEGQLGTDRVFAPELQAIRPHPGQAASAANLTALLKDSGVVASHRGPDCNRVQDAYSLRCSPQVHGGVRDTVAHASSVAARELASAVDNPVVLADQGRVESNGNFHGAPIAYVLDFLAIVTADLASIAERRTDRFLDKARNHGLPPFLADDPGVDSGLMIAQYTQAAIVSELKRLANPASVDSIPSSAMQEDHVSMGWSSARKLRRSVDGLTRVLAIELMTAARALNLRAPLEPSPATGAVVELLRDAGVGGPGIDRFLAPEIETAYQLVADRSVTAAVANVIGELS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV14</accession>
    <name>A0A0Q8UV14_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893470.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49068">
        <property type="protein sequence ID" value="KRC49068"/>
        <property type="gene ID" value="ASE19_19480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1811043at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="22"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="21711" checksum="2C88192E05D84615" modified="2016-01-20" version="1">MDASEPAPLEIRRVPPRQAWQAIALAGAAVLGGALLVISGVLALATQDLEPAEQVNGGLVVVVGAMAGVWGGRRLRNRRGLLRSDVVLRLDAHGVGALTGSLAEDGAWASLSWADLDRVEIREHRLGPPYFVEEKQAPVLRFVATDDAAIQVGHGSPYEAVKAAALDITPAAAALAMILGPTTQDRLPPIRAWLAAHRPEVRVVEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV87</accession>
    <name>A0A0Q8UV87_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Adenine phosphoribosyltransferase</fullName>
            <shortName evidence="10">APRT</shortName>
            <ecNumber evidence="5 10">2.4.2.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">apt</name>
        <name evidence="12" type="ORF">ASE19_19120</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>AMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + adenine</text>
            <dbReference type="Rhea" id="RHEA:16609"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.4.2.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Purine metabolism; AMP biosynthesis via salvage pathway; AMP from adenine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the purine/pyrimidine phosphoribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.7" evidence="5 10"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49125">
        <property type="protein sequence ID" value="KRC49125"/>
        <property type="gene ID" value="ASE19_19120"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00588">
        <property type="reaction ID" value="UER00646"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003999">
        <property type="term" value="F:adenine phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006168">
        <property type="term" value="P:adenine salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044209">
        <property type="term" value="P:AMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006166">
        <property type="term" value="P:purine ribonucleoside salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00004">
        <property type="entry name" value="Aden_phosphoribosyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005764">
        <property type="entry name" value="Ade_phspho_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01090">
        <property type="entry name" value="apt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 10 12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9 10" id="KW-0660">Purine salvage</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="11">
        <location>
            <begin position="65"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC49125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="185" mass="18803" checksum="9C50C2760756A95B" modified="2016-01-20" version="1">MGDASATDRAVEALTRLVRDVPDFPEPGILFKDITPLLGDAGGFAAVVDGLADAGRDASGAVVVDKVVGMEARGFILAAPVALALGVGFVPVRKAGKLPHDTHSVAYALEYGDAVLELHQDAVAPGERVLVIDDVLATGGTARATHELVTACGATTAAFAFLMELGFLDGRGALGDVPATVLLTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVB5</accession>
    <name>A0A0Q8UVB5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AAA family ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19180</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AAA ATPase family. RarA/MGS1/WRNIP1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49128">
        <property type="protein sequence ID" value="KRC49128"/>
        <property type="gene ID" value="ASE19_19180"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032423">
        <property type="entry name" value="AAA_assoc_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008921">
        <property type="entry name" value="DNA_pol3_clamp-load_cplx_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021886">
        <property type="entry name" value="MgsA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16193">
        <property type="entry name" value="AAA_assoc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12002">
        <property type="entry name" value="MgsA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48019">
        <property type="entry name" value="SSF48019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="2">
        <location>
            <begin position="59"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC49128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="447" mass="47525" checksum="4B076E34F5F847A0" modified="2016-01-20" version="1">MFDTPSSRGATSGGSLADAAHVAAPLAVRMRPRDLDELVGQGHLRAPGSPLRQLVEGDQSLSLLLWGPPGTGKTTIASIISQQTGRRFVEVSAVSAGVKEVRAAIDAARRDLIATGEETVLFVDEVHRFSKAQQDALLPGVENRWVTLVAATTENPSFSVISPLLSRSLLLRLQPLTDDDIAAVLDSAVTDERGLAGELELEEEARAHIVRLAGGDARRSLTYLEAAAGAARSKGSTTIDVATAETAADQAAVRYDRDGDQHYDVVSAFIKSVRGSDADAALHYLARMIEAGEDPRFIARRLMILASEDVGLADPTALTTAVAAAQTVQLIGMPEAQLTLAHATIALAVAPKSNAVTTAIFEAIADVRAGKIGNVPPHLRDAHYSGAKTLGHGVGYVYSHDAPFGVAEQQYAPDVVLDRAYYRPTELGAEAGVKQRWERVRRIIRGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWX1</accession>
    <name>A0A0Q8UWX1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">Cell division ATP-binding protein FtsE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ftsE</name>
        <name evidence="8" type="ORF">ASE19_21440</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Part of the ABC transporter FtsEX involved in cellular division.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer. Forms a membrane-associated complex with FtsX.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Peripheral membrane protein</topology>
            <orientation evidence="6">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896167.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46397">
        <property type="protein sequence ID" value="KRC46397"/>
        <property type="gene ID" value="ASE19_21440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1181903at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005286">
        <property type="entry name" value="Cell_div_FtsE_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02673">
        <property type="entry name" value="FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="6 8" id="KW-0132">Cell division</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="2"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU365094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="239" mass="26321" checksum="9A3EE0C56C16A251" modified="2016-01-20" version="1">MIRFEKVTKRYAGPGRPALDQVTLDIDKGEFVYLVGQSGSGKSTALRLVLRELRPTGGRVYVAGKEINRMAGWKVPRLRRQIGTVFQDFRLLPNKTVAENVAFAQQVIGKSQREISKVVPETLELVGLKDKADRMPDELSGGEQQRVAVARAYVNRPMILIADEPTGNLDPQTSVGIMNLLGDINSSGTTVVMATHDHGIVDQFTKRVIELVHGKVVRDEAAGSYGFQHLDSQPDEQEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXS1</accession>
    <name>A0A0Q8UXS1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA_edit domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22405</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896329.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46561">
        <property type="protein sequence ID" value="KRC46561"/>
        <property type="gene ID" value="ASE19_22405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1935578at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.960.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036754">
        <property type="entry name" value="YbaK/aa-tRNA-synt-asso_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007214">
        <property type="entry name" value="YbaK/aa-tRNA-synth-assoc-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04073">
        <property type="entry name" value="tRNA_edit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55826">
        <property type="entry name" value="SSF55826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA_edit" evidence="1">
        <location>
            <begin position="47"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="182" mass="19090" checksum="7972F1A12B561F28" modified="2016-01-20" version="1">MAVELPRLPRLTSLPALDHPELVAPPVAAALASWPGAAGVAVVEIDPELADTAAMSAAYDVPMEAGANCVLVAGRREGDERIAACLVRADTRADVNHTVKRLLDVRKPSFLPLERAVAESAMEYGGITPVGLPEGWRLLVDARVADIDVAVIGSGLRRSKLLVPGRLLAQLPRAEVVEGLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY69</accession>
    <name>A0A0Q8UY69_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_16520</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893675.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50206">
        <property type="protein sequence ID" value="KRC50206"/>
        <property type="gene ID" value="ASE19_16520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="66530at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025696">
        <property type="entry name" value="rRNA_proc-arch_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012961">
        <property type="entry name" value="Ski2_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08148">
        <property type="entry name" value="DSHCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13234">
        <property type="entry name" value="rRNA_proc-arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01142">
        <property type="entry name" value="DSHCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="43"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="3">
        <location>
            <begin position="292"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="259"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="926" mass="102703" checksum="EF15668E665AAF1E" modified="2016-01-20" version="1">MSEQEPSAAERYSSYRRDKGHPVFRDFAASFSFPLDEFQVEGCKAVEDGDGVLVAAPTGAGKTVVGEFAVHMALETGRKCFYTTPIKALSNQKYNDLVDRYGADRVGLLTGDTTINGEAPVVVMTTEVLRNMLYARSRTLVGLGYVVMDEVHYLADRSRGAVWEEVIIHLPESVSVVSLSATVSNAEEFGEWLETVRGSTRTIVAERRPVPLFQHVMVGRRLLDLFASSDVDAAAGFVREGAPVNDELMKLARDDWASSRLKDRRTPKGARGRQGSPGSRNVGNGRRIWIPSRLDVISELERKNLLPAIDFIFSRAGCDAAVQQCLDANLRLTTPEERDAAIAYVERTLGGLPSDDLQVLGYHDFLDAASRGVAAHHAGMLPAFKECVEELYLRGLVKMVFATETLALGINMPARTVVLEKLSKWNGETHADITPGEYTQLTGRAGRRGLDIEGHAVVLWQPGMNPRELAGLASTRTYPLRSSFRPSYNMAVNLVHSYGRHRARELLEQSFAQFQADRAVVGLARQQRKAEDALAGYAEAAQCHLGDFMEYAALRRRVSELEKSSSKVRRDDRRDEAAASLEKLQPGDIIVVPTGKFAGPAVIVDPGLSDKGHRPLVITAERQGRRLAMMDFPTPVEPVARIRLPRRIDARNPQQRKDIAQMIREAVRGLPLSTTRPRAERAPVDAGTAQQIAAIRAQIREHPCHGCAEREDHARWAERYAKLEKDTQTLAQRIERRTNTVARTFDRVCEVLEALDYLHEDEVTERGRGLMRIYSDLDLVAAESLRTGLWDDLSPVQLGAVLSALVYEARRPEDGPPNVPGGAVAITIDAMTRLWGELERLEREHRLDFLRKPDGGFAWTAMRWAEGQDLDEVITRNDQTAGDFVRQMKQLIDFSGQIADAAAGTPVRDTARELVKLLRRGIVAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY90</accession>
    <name>A0A0Q8UY90_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16000</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893583.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50116">
        <property type="protein sequence ID" value="KRC50116"/>
        <property type="gene ID" value="ASE19_16000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1885421at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359526" evidence="2">
        <location>
            <begin position="38"/>
            <end position="519"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="159"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="191"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="235"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="294"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="335"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="380"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="418"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="448"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="492"/>
            <end position="513"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="519" mass="53446" checksum="1F87C66510CADEE8" modified="2016-01-20" version="1">MSTTTGWRLLLGLALRRDRVLAAVWIAVLVLMSVASAAATPSLYADQADRVHAAEALNASPAIVALYGPVLDVTSEGELAMTKMTVLYAVFVAVLFVVVVRRHTRVEEETGRTELVGGTSVGRNAPLLAVAVETLLLAAALGVLTAVGNAVSGLAPSGSIAFGALWAGTGLVAAGIGAVTAQVSASARTCAGFAAATIGVLFVLRAAGDTGPEWLGWLSPLGWNTRVAAYGDTRWWLLAAYPVLTVALAAVAVALRGRRDLGSGLLAARPGPAEGSPRLTDALTLALRTTGTTLLLWTLAAGVLGVVFGMIAPGIGDLLDSETAQSLIDELGGELVAAILSVVAVVLTYFAATVVAHTARDETDGRAELVLATGTSRGAWFGATLVVALVGTALLLVVTGIGLWIGYVAADGPGIGNLLVAALAWVPAAWVVGALAVLSLAWGTRWSVLAWVWPAAFLVLGMLGDLLELPAWVSGLSPYAHVPSLPSEQWSWGSSGTLTALAVALLLVAWWRFRERDIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYC7</accession>
    <name>A0A0Q8UYC7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Membrane-flanked domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19875</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895906.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46130">
        <property type="protein sequence ID" value="KRC46130"/>
        <property type="gene ID" value="ASE19_19875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1750498at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005182">
        <property type="entry name" value="DUF304"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03703">
        <property type="entry name" value="bPH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="bPH_2" evidence="2">
        <location>
            <begin position="89"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="178" mass="19825" checksum="821AC052DD00B7BC" modified="2016-01-20" version="1">MSFVAGVVLRLGDPNIGKHLLRDEGEVVVDEVTHHWFAYLRPGAEAALAMLLLVGSWFVAVEVAWFFLVLAVLLLAHASWGALAVLRDRFVITNMRVFRVHGVLAQSLATMPLSRILDISVKKPLHGRILGFGHFCFESAAQEQGLRDIRYVGRPDERDLAIQRVVQRAGLRGPRVPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYC9</accession>
    <name>A0A0Q8UYC9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cysteine desulfurase</fullName>
            <ecNumber evidence="4">2.8.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_15960</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[sulfur carrier]-H + L-cysteine = [sulfur carrier]-SH + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:43892"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="EC" id="2.8.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.7" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893578.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50111">
        <property type="protein sequence ID" value="KRC50111"/>
        <property type="gene ID" value="ASE19_15960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="446447at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031071">
        <property type="term" value="F:cysteine desulfurase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006534">
        <property type="term" value="P:cysteine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06453">
        <property type="entry name" value="SufS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010970">
        <property type="entry name" value="Cys_dSase_SufS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01979">
        <property type="entry name" value="sufS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_5" evidence="5">
        <location>
            <begin position="31"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="423" mass="45594" checksum="6B0D8BD114898BCC" modified="2016-01-20" version="1">MSLEGLLPELAVIRKDFPILERTLAGGMPLVYLDSANTSQKPQVVIDTMVDHLERHNANIARAMHQLGAESTEAFEAARDKVAAFIGAPERDEVIFTKNASEALNLVANTLAWAGPRRVGEGDEVVITEMEHHSNIVPWQLLTQRTGATLRWFGLTDEGRLDLSNIDQLINERTKVVSLTWVSNMLGTINPIAEITRKAHAVGAIVVVDASQAAPQLPIDLAAMPADERPDLVAFTGHKVVGPTGIGVLWGSRAVLDELPPFLGGGEMIETVRMEGSTYAGIPHKFEAGTPPIVEAIGLGAAVDYLGHVGMDAIHRHEQAITAYALEGLQSVKGLTVLGPLDAASRGGAISFELDGVHPHDIAQVLDSRGVAVRAGHHCAKPAHARFGVQSSTRMSSYLYTEPREIDALVEALEYTRSYFKLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYD1</accession>
    <name>A0A0Q8UYD1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893737.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50268">
        <property type="protein sequence ID" value="KRC50268"/>
        <property type="gene ID" value="ASE19_16870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1694750at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="1">
        <location>
            <begin position="42"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="36175" checksum="447C96BBDA7259AD" modified="2016-01-20" version="1">MSEPTSVDILGEPWFVETIPLDDDFEGEVVASLVSRRGEAPTEHAVLHVHGFSDYFFHTEFGEWWLERDHDVYGLDLRKYGRSLRPHQSATYTADLDDYFADLDAAWERITVRDGHTRVVLSGHSTGGLVVALWADARQPAELAGLLLNSPWLDLQGPPAVRTPVANVLLDQIGRRRPMRVLGREVNGYYARSLHRDHEGEWDFDLTWKPVESFPVRLGWLRAIRQGHARLQAGLSVPAPVLVLSSDRSSAPSGMSEDVFSTDIVLDVRQIRRWASAVGRHVTYVAVPGAVHDVVLSRAEPRARAYEEIRLWLDAYVLGDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYG2</accession>
    <name>A0A0Q8UYG2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17015</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal stress protein A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893765.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50296">
        <property type="protein sequence ID" value="KRC50296"/>
        <property type="gene ID" value="ASE19_17015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2040681at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006015">
        <property type="entry name" value="Universal_stress_UspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01438">
        <property type="entry name" value="UNVRSLSTRESS"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="8"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="150"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="307" mass="32850" checksum="B1A3E57E9407EFE5" modified="2016-01-20" version="1">MTIQQPPVVVGHDGTDASHGALHFAVTEARRDGVPLRIVHAMPLPASAFLDSPVLVEELDAERERIESELRAVATRTAGDVEVQVVTCHGTPASVLLATAEDARILVIGRERRTGLQRLIGGATAEAVAAHAASPVVVVPEDWRADRPARRRIVVALKEPAHSNELLDVAFRRAEQSGAALRVVHAWDPAHDALDAHLPDSWTPRALLVDRAEAAITGLLQPWRRAYPSVPVGVEVHPVDPRADLLEETSAADLVLMLRGTAPVLGPHLGGVLRTALHASDCPVLVVPATGEAMTPFELEREGALLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYH3</accession>
    <name>A0A0Q8UYH3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Urea ABC transporter ATP-binding protein UrtD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_16470</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893665.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50196">
        <property type="protein sequence ID" value="KRC50196"/>
        <property type="gene ID" value="ASE19_16470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1179151at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017781">
        <property type="entry name" value="ABC_transptr_urea_ATP-bd_UrtD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03411">
        <property type="entry name" value="urea_trans_UrtD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="6"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="242"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="254"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="273" mass="29575" checksum="9435CBD445500DBA" modified="2016-01-20" version="1">MNDDYLEIRDLTVEFDGFRAIDGVDLTLLQGQLHFLIGPNGAGKTTLVDAVTGLVPATGLARYRHRDLLATKSHRIVRAGIGRTFQTATVFEGLSVLQNLDIAGGIHRSAWKMVLARRGTPSYVEEALETIGLSHLRDRPAGVLAHGQKQWLEIGMLLVQDARVMLLDEPVAGMSAEEREETGELLRRIGRERTIVVIEHDMDFVRSYADVVTVMHAGKVLAEGSVAEIQADPRVQEVYLGRQAEAGAPETSGAETSGAETSGAETSQEAGHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYJ3</accession>
    <name>A0A0Q8UYJ3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">Tyrosine recombinase XerD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">xerD</name>
        <name evidence="15" type="ORF">ASE19_17220</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the 'phage' integrase family. XerD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893799.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50330">
        <property type="protein sequence ID" value="KRC50330"/>
        <property type="gene ID" value="ASE19_17220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="745068at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009037">
        <property type="term" value="F:tyrosine-based site-specific recombinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01808">
        <property type="entry name" value="Recomb_XerC_XerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01807">
        <property type="entry name" value="Recomb_XerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011932">
        <property type="entry name" value="Recomb_XerD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023009">
        <property type="entry name" value="Tyrosine_recombinase_XerC/XerD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02899">
        <property type="entry name" value="Phage_int_SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02225">
        <property type="entry name" value="recomb_XerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="5 11" id="KW-0132">Cell division</keyword>
    <keyword evidence="6 11" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="4 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11" id="KW-0229">DNA integration</keyword>
    <keyword evidence="9 11" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="8 11 12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="14">
        <location>
            <begin position="5"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="13">
        <location>
            <begin position="117"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="254"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="257"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="280"/>
        </location>
    </feature>
    <feature type="active site" description="O-(3'-phospho-DNA)-tyrosine intermediate" evidence="11">
        <location>
            <position position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC50330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="311" mass="32934" checksum="F5EBCEABCD90B053" modified="2016-01-20" version="1">MSGAGAVDRAVRTYLDHLTVEKGLAANTLTSYQRDLRRYREHLAAAGIDRLDAVTESTVTEFLMRLREGDADHPPLSASSAARTVVAVRGFHKFAVADGLAQLDPAAAVKPPTPAKRLPKALPLSDVEAILDAAGAPGTPLALRDRALLEVLYGTGARISEAVGLDVDDVSGLDLDNAVLLRGKGGKERLVPVGSYARAALSAYLVRGRPALVAQATPALFLNARGGRLSRQSAWAVLVKAAERAGVTRDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDNLREVFATAHPRARDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYN6</accession>
    <name>A0A0Q8UYN6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">4-hydroxyacetophenone monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16720</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893713.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50244">
        <property type="protein sequence ID" value="KRC50244"/>
        <property type="gene ID" value="ASE19_16720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="630753at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="483" mass="52742" checksum="638CE4D955A98524" modified="2016-01-20" version="1">MQPSVIVIGAGFGGLAVAHHLRAAGVTDITILERADDIGGVWRDNVYPGAACDVPSVLYSWSFARKADWTHRYARQPEILDYIREHADASGLRDLVRTHAEVAEAAWDDDTRAWTVRLTTGEELTADVVVSSVGQLSRPAIPRIPGLDGFAGPVFHSATWDHDVDLAGKRVGVVGTGASAIQFVPAIADRVGALTVFQRSAPYVVPKPDGAYSPRQQHRFAKHPRLHHLTRRGVFHLSEQLNRTLDSDGRLAVVLHKAWQLQLRRQVKDPALRAKLVPDYPLGCKRLLFANDWYSTLARPHVDVVADVIAAVEPAGVRTDDGVLHELDVLILGTGFAATEFLAPMDVRGRGGRRLRDAWAGGARAHLGIAVPDFPSFFILYGPNTNLGGSSIIGMLEAQAGYVVAAVLEGARRGAPLAVRADRAAAYDEEMQHRLGDSVWSSCTSWYREPGGRITTNWPGTVAEYQRRTADFDPSDFELEAVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ34</accession>
    <name>A0A0Q8UZ34_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phenylacetate-CoA oxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21655</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896204.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46434">
        <property type="protein sequence ID" value="KRC46434"/>
        <property type="gene ID" value="ASE19_21655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2083684at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.520">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009359">
        <property type="entry name" value="PaaB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038693">
        <property type="entry name" value="PaaB_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06243">
        <property type="entry name" value="PaaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF030200">
        <property type="entry name" value="PaaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02157">
        <property type="entry name" value="PA_CoA_Oxy2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="98" mass="11210" checksum="844F6B7F699CD21C" modified="2016-01-20" version="1">MSDTIRAEWPLYEVFVRGKRGLNHVHVGSLHASDDHLALRHARDVYTRRNEGVSIWVVRSTDISASSPDEKDPLFAPSGDKVYRHPTFYDIPDNVPHM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V204</accession>
    <name>A0A0Q8V204_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MarR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15075</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51478">
        <property type="protein sequence ID" value="KRC51478"/>
        <property type="gene ID" value="ASE19_15075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023187">
        <property type="entry name" value="Tscrpt_reg_MarR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01117">
        <property type="entry name" value="HTH_MARR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="118" mass="13083" checksum="3B2AA925C4C0DA65" modified="2016-01-20" version="1">MVAEWRQLLDRHAAVSCALEKALQDGHGIGLSEFETLDRVVDANCGKYRMADLAGDIHLSQSALSRAITRLEKDGLVERSACVDDRRSVFVCLTARGREVYDAALPTHREVLRGSWGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2N2</accession>
    <name>A0A0Q8V2N2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Protein adenylyltransferase SelO</fullName>
            <ecNumber evidence="9">2.7.7.n1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">selO</name>
        <name evidence="10" type="ORF">ASE19_18190</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + L-seryl-[protein] = 3-O-(5'-adenylyl)-L-seryl-[protein] + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:58120"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:15073"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:142516"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + L-threonyl-[protein] = 3-O-(5'-adenylyl)-L-threonyl-[protein] + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:54292"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:13847"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:138113"/>
            <dbReference type="EC" id="2.7.7.n1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + L-tyrosyl-[protein] = diphosphate + O-(5'-adenylyl)-L-tyrosyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:54288"/>
            <dbReference type="Rhea" id="RHEA-COMP:10136"/>
            <dbReference type="Rhea" id="RHEA-COMP:13846"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:83624"/>
            <dbReference type="EC" id="2.7.7.n1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the SELO family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.n1" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893249.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48848">
        <property type="protein sequence ID" value="KRC48848"/>
        <property type="gene ID" value="ASE19_18190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="130048at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00692">
        <property type="entry name" value="SelO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003846">
        <property type="entry name" value="SelO"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32057">
        <property type="entry name" value="PTHR32057"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02696">
        <property type="entry name" value="SelO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 9" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Proton acceptor" evidence="9">
        <location>
            <position position="253"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="91"/>
            <end position="94"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="126"/>
            <end position="127"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="254"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="263"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC48848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="485" mass="52082" checksum="904D9E42BAA92C06" modified="2016-01-20" version="1">MTTAPADVAVLEHRFATALPELALPVEAATTPDPRIVLLNVPLAEELGLDPERLATPEGLGLLTGTRPPTGATPVAQAYAGHQFGGFARLGDGRALLMGELVAPDGRLRDLHLKGSGRTRFARGGDGLAALGPMLREYVVSEAMHALGIPTTRSLAVVATGRRVQREEALPGAVLARIASSHLRVGTVQLARATDDPVLLRRVADLAIERHHPLAAEDPAPYLALYRAVIAVQARLIAQWMLVGFVHGVMNTDNMTLSGETIDYGPCAFLDAYDPATVYSSIDEGGRYAYGRQPAAAHWNLARLGEAMLPLLDDDEDRAVALATEALATFGSLYDDAMASGLRAKLGLPVGTEADARRIAGPLLDLLAASHVDHTTFWRHLATAARGDAEPVRGLFLDLAALDDWLTGWRALRPDPDAMDRVNPAYLPRNHLVEEALAAADAGDLAPTQRLLEAIRDPYRPRPGFERYAEPAPEDFGRYRTFCGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3A3</accession>
    <name>A0A0Q8V3A3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_19410</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893458.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49056">
        <property type="protein sequence ID" value="KRC49056"/>
        <property type="gene ID" value="ASE19_19410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1384345at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="58"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="88"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="112"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="143"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="177"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="218"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="252"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="286"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="310"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="346"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="376"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="23"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC49056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="400" mass="38759" checksum="62C92523352612FE" modified="2016-01-20" version="1">MTSTTAGSAPATDRTTTELPLPALLVLGGATLVMVTGEMLPTAVLAPMSAGLGVSDSAAGLLVSIWAAVVVVASFPLVHLVRHVPRTLVITGSLVAFGVASALTALAPSYGVVVGARTLGAAAVGLLWATVNAHVADLVPDRLLGRATAIVLGGATLGMVLGTPVGRFVADLAGWRAAFWTLAVGSVLAAVLVRAVVPAVAAPPAGTTADGPHRQDGALRPMVAVTVLVALALVGHYGAFTFVTRLGEPADAVLPGGMGSVLLAFGVASAAGVALAGRVTGDTRSALVVATAATAAALLALGAAGDSSWLVLGSVVTWGVVSGALPPLAQTLVLRLAGPAHRTLAGALIPVLFNGGIAVGAAFAAGTVAIGGTGALVVPAAGLVALAAAGLAAGTVRARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3L6</accession>
    <name>A0A0Q8V3L6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative glutamate--cysteine ligase 2</fullName>
            <ecNumber evidence="2">6.3.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Gamma-glutamylcysteine synthetase 2</fullName>
            <shortName evidence="2">GCS 2</shortName>
            <shortName evidence="2">Gamma-GCS 2</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15635</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 2">
            <text>ATP + L-cysteine + L-glutamate = ADP + gamma-L-glutamyl-L-cysteine + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13285"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58173"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.2" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893520.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50051">
        <property type="protein sequence ID" value="KRC50051"/>
        <property type="gene ID" value="ASE19_15635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="991285at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004357">
        <property type="term" value="F:glutamate-cysteine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042398">
        <property type="term" value="P:cellular modified amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01609">
        <property type="entry name" value="Glu_cys_ligase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006336">
        <property type="entry name" value="GCS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011793">
        <property type="entry name" value="YbdK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04107">
        <property type="entry name" value="GCS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02050">
        <property type="entry name" value="gshA_cyan_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 3" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="372" mass="39886" checksum="75DE2598C573152C" modified="2016-01-20" version="1">MVRTVGVEEELLLIDPVSRQAVPRAPEVLKHAAEHHLPGSDALDHELFRHQLEIRTPPVADVASLYEHVLLTRRTASLAASAAGLVTAACGAVPLRSAPPRTTRNDRYLAMVDTFGEVARPGGTCGMHVHVAVADDEEAVIALDGLAPWLPVLLAMSANSPFYAGHDTGYASWRSHLWAQWPSAGPTERFGSVAAYREVGRRLIASGAALDEGMLYYDARVARNFPTVEIRVPDVCTDPADAVLIAALARALVEHLAAAGRPTVASDVWRAELLRAARWRASRYGLGDRILDPVSGELAPARDVLALLVRTVREPLEAAGDVDIVTEGVARVLADTGSTRQRAAFERSGGSVERVVDDLVQRTNAAGNAVRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3R3</accession>
    <name>A0A0Q8V3R3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Transketolase</fullName>
            <ecNumber evidence="4">2.2.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_15900</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the transketolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.1" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917984.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50099">
        <property type="protein sequence ID" value="KRC50099"/>
        <property type="gene ID" value="ASE19_15900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="188169at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004802">
        <property type="term" value="F:transketolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd02012">
        <property type="entry name" value="TPP_TK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005478">
        <property type="entry name" value="Transketolase_bac-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033248">
        <property type="entry name" value="Transketolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033247">
        <property type="entry name" value="Transketolase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43522">
        <property type="entry name" value="PTHR43522"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02780">
        <property type="entry name" value="Transketolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00456">
        <property type="entry name" value="Transketolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00232">
        <property type="entry name" value="tktlase_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00801">
        <property type="entry name" value="TRANSKETOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TRANSKETOLASE_1" evidence="9">
        <location>
            <begin position="19"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS00801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC50099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="701" mass="74872" checksum="D34FB0DB1FB06347" modified="2016-01-20" version="1">MIPELDWTDLDRKAVDTARVLAMDAVQKVGNGHPGTAMSLAPAAYLLFQKVMRHDPADPAWTARDRFVLSCGHSSITLYTQLYLGGFGLELSDLESLRTWDSKTPGHPEYGHTAGVEVTTGPLGQGVANAVGMAMAARRERGLIDPAADGGPSIFDHHVYVIASDGDLEEGVSGEASSIAGTQELGNLTVIYDANRISIEGDTHIAFNEDVAKRYEAYGWHVQTVDWTGNDHSDLANYEEDVPALHAAIKAADEIADKPSLIVLKTVIAWPAPSAQNTEAAHGSALGADEVAATKRVLGFDPDKSFEVPEDVIAHTRGLVERGKAWAAEWNEQFQAWSAAHPEGAAILHRLKDRRLPDGVEAALPVFEADAKGVATRAASGKVINALAPVMPELWGGSADLAGSNNTTIKXXSFLPFDRSVEEWQGDPYQGRVLHFGIREHGMGAIMNGIAVHGGTRVFGGTFLTFSDYMRGAVRVAALMKVPVTYVWTHDSVGLGEDGPTHQPIEHLWALRGIPGLDIIRPADANETAAAWLQVLRNNDRPAGLILSRQNVPTFPRGTEGFATTDDVAKGGYVLIDAEGGEPDVVLMGTGSEVQLAVAAREQLATEGIRARVVSLPCLEWFEAQTQAYRDSVIPPIVKARVSVEAGTKTGWREYVGDAGRIVSIDHYGASADAGTLFREFGFTPEAVAAAAKDSIAAAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3R6</accession>
    <name>A0A0Q8V3R6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA topoisomerase (ATP-hydrolyzing)</fullName>
            <ecNumber evidence="3">5.6.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_17640</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48753">
        <property type="protein sequence ID" value="KRC48753"/>
        <property type="gene ID" value="ASE19_17640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="205481at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034335">
        <property type="term" value="F:DNA negative supercoiling activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.670">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002288">
        <property type="entry name" value="DNA_gyrase_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001241">
        <property type="entry name" value="Topo_IIA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013760">
        <property type="entry name" value="Topo_IIA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013759">
        <property type="entry name" value="Topo_IIA_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013506">
        <property type="entry name" value="Topo_IIA_bsu_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018522">
        <property type="entry name" value="TopoIIA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00204">
        <property type="entry name" value="DNA_gyraseB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00986">
        <property type="entry name" value="DNA_gyraseB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01751">
        <property type="entry name" value="Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00433">
        <property type="entry name" value="TOP2c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56719">
        <property type="entry name" value="SSF56719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00177">
        <property type="entry name" value="TOPOISOMERASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Toprim" evidence="5">
        <location>
            <begin position="463"/>
            <end position="577"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC48753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="690" mass="75452" checksum="F9AB4CFB0773759A" modified="2016-01-20" version="1">MADNTYNAAHLLVLEGLDAVRKRPGMYIGSTDTRGLMHCLWEIIDNGVDEALGGFARTVDVTLHPDGSVEVYDDGRGIPTDKEPKTGLSGVEVVATKLHAGGKFGGGSYVATGGLHGVGLSVVNALSSRMDIDVDRSPATQGISFQRGVPGVFDGEGPSAPFTPASGLSRKGGRVAKGRSGTRIRFWPDRQIFTKDATFVLDGLIGRARQTSFIVPGLELVIRDQRAADPVEWVEERFRHDGGIGEFCDYLATGEPVTEVLRLQGSDTFTETVPLLDDKGHMTPQDVERELTVDVAVRWGTGYDSELRSFVNVIATPKGGTHVSGFETALTKTFNDAMRATKALKVNDDDVVKDDILEGMTAVVTVRLAEPQFEGQTKEILGTPAARSVVRKVVAAELKEFLTSTKRAEKAQAKLLMEKVVAASKTRIAARQHKETQRRKNALESSSLPAKLADCRASDNERTELFIVEGDSALGTAKLARNAEFQALLPIRGKILNVQKASVGDMLKNTECASIIQVVGAGSGRTFDLEARRYGRIIFMADADSDGAHIRTLLATLFFKYMPDLIMAGRVYSAVPPLHRIEISSPKKGQDKYVYTYSDDELQRKLAELKKKNVRWKDPVQRYKGLGEMDADQLAETTMDPRRRTLRRLTVDDANLSAEVFELLMGSDVAPRKEFIVQGAYEIDMEALDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5P8</accession>
    <name>A0A0Q8V5P8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-keto-4-pentenoate hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893476.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49074">
        <property type="protein sequence ID" value="KRC49074"/>
        <property type="gene ID" value="ASE19_19510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1314120at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.850.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011234">
        <property type="entry name" value="Fumarylacetoacetase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036663">
        <property type="entry name" value="Fumarylacetoacetase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01557">
        <property type="entry name" value="FAA_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56529">
        <property type="entry name" value="SSF56529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAA_hydrolase" evidence="1">
        <location>
            <begin position="99"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="272" mass="28442" checksum="AF4985C3C4A185D8" modified="2016-01-20" version="1">MTSLPPVQGSAISAAVERLATAQATRVPCSAVRDLIGTDDLPAAYAVQQSLVQARIAGGASVVGRKIGATSEAVQKQLGVDQPDFGYLLSDMDVSDGVDGTPISMRTLVQPRVEAEVAFVLARDIDFPADEITLELVRDAVEVALPALEIVDSRIENWDIGFTDTVADNASSGLFVVGRDGLPLSGIEPRDVVMSLTINDEERSSGTGAACLGDPLEALRWLAVQAARFGDPLRAGHLILSGALGPFVPFAPGDRVTASISGFAPLTVSFEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5R2</accession>
    <name>A0A0Q8V5R2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 19">Adenosylcobinamide-GDP ribazoletransferase</fullName>
            <ecNumber evidence="7 19">2.7.8.26</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="18 19">Cobalamin synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="17 19">Cobalamin-5'-phosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="primary">cobS</name>
        <name evidence="20" type="ORF">ASE19_17515</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">Root79</strain>
        </source>
    </reference>
    <reference evidence="20 21" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="16 19">Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 19">
            <text>adenosylcob(III)inamide-GDP + alpha-ribazole 5'-phosphate = adenosylcob(III)alamin 5'-phosphate + GMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23560"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57918"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:60487"/>
            <dbReference type="ChEBI" id="CHEBI:60493"/>
            <dbReference type="EC" id="2.7.8.26"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 19">
            <text>adenosylcob(III)inamide-GDP + alpha-ribazole = adenosylcob(III)alamin + GMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16049"/>
            <dbReference type="ChEBI" id="CHEBI:10329"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:60487"/>
            <dbReference type="EC" id="2.7.8.26"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 19">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5 19">Cofactor biosynthesis; adenosylcobalamin biosynthesis; adenosylcobalamin from cob(II)yrinate a,c-diamide: step 7/7.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="19">Cell membrane</location>
            <topology evidence="19">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="4">Membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6 19">Belongs to the CobS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.26" evidence="7 19"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49090">
        <property type="protein sequence ID" value="KRC49090"/>
        <property type="gene ID" value="ASE19_17515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1947040at2"/>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00238"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051073">
        <property type="term" value="F:adenosylcobinamide-GDP ribazoletransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008818">
        <property type="term" value="F:cobalamin 5'-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00719">
        <property type="entry name" value="CobS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003805">
        <property type="entry name" value="CobS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34148">
        <property type="entry name" value="PTHR34148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02654">
        <property type="entry name" value="CobS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 19" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 19" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="13 19" id="KW-0460">Magnesium</keyword>
    <keyword evidence="15 19" id="KW-0472">Membrane</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 19" id="KW-0808">Transferase</keyword>
    <keyword evidence="12 19" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="14 19" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="48"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="101"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="130"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="168"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="194"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="217"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00010561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00015850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00025228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00032605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00032853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="KRC49090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="240" mass="23750" checksum="230B0DCF390AD2C6" modified="2016-01-20" version="1">MLTALRVPPVLQVSPGLATGALLLAPLAVLPLGAAVGLALWAGGRLELPAAAVAFVALALLATGSRALHLDGLSDVADGLTSSYDRERSLAVMKSGTAGPAGVAAVVLVLGAQAAALTWFVPWAGEVRTAVVASAAVCASRAALWITCSVLAPPAREDGLGVTFTRRVPLAVTVIGWGALAALAALVDPVRGPVTVLVAGLVVAGLTRHAVRRFGGVTGDVFGASIEVALAVLLIGLAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5X9</accession>
    <name>A0A0Q8V5X9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MaoC_dehydrat_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09815</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894652.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52715">
        <property type="protein sequence ID" value="KRC52715"/>
        <property type="gene ID" value="ASE19_09815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1380653at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039569">
        <property type="entry name" value="MaoC-like_dehydrat_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016709">
        <property type="entry name" value="UPF0336"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13452">
        <property type="entry name" value="MaoC_dehydrat_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018072">
        <property type="entry name" value="UCP018072"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC_dehydrat_N" evidence="1">
        <location>
            <begin position="39"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="132" mass="13495" checksum="58DD46E3F4E39CDE" modified="2016-01-20" version="1">MPIDASLVGRAFPATQPHPVTAEAVQAFTAAVGSAPDGNVPPTFPIVVAFAALQDFLAAEQVELSRIVHGDQRFRYQRPVAVGDVLTAQLTVTGVRSIGGNDIVSTSSEITDADGGVVCTATATIVHRGGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V643</accession>
    <name>A0A0Q8V643_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">MBL fold metallo-hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10085</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894691.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52758">
        <property type="protein sequence ID" value="KRC52758"/>
        <property type="gene ID" value="ASE19_10085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="767622at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="212" mass="22778" checksum="7548BF3FDFD8B743" modified="2016-01-20" version="1">MRLTKFGHAAVRIEHDGTTLVLDPGMWSQRECVDGVDAVLITHEHPDHFDVEHLRATDAPIFTIAAVAAQIRDAAPDVAERVTVVGPDEAWAIGDIGVRAIGELHAVIHPDLPRFHNSGYLLSLGEQTVFHPGDALTVPGRPVDVLLAPVCAPWMRASEGIDFARAVGAPRNVAIHDRVYSGEGLGIVDGQFGRLLGARGLDYVRLPDGSDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V669</accession>
    <name>A0A0Q8V669_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Iron ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_09875</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894659.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52724">
        <property type="protein sequence ID" value="KRC52724"/>
        <property type="gene ID" value="ASE19_09875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1567509at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026045">
        <property type="entry name" value="Ferric-bd"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002825">
        <property type="entry name" value="CfbpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359739" evidence="3">
        <location>
            <begin position="27"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="224"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR002825-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="337" mass="36672" checksum="175508BC415846B2" modified="2016-01-20" version="1">MKKQLVRAGLGVAALTLLAPLLAACGDDEPKLVIYNAQHEQLLKELAPEFTKETGIEVELRNGKDLELSNQLVQEGKASPADVFLTENSPAMSQVEAAGLFSKLPSDILDVIPAQYRPRSGLWTGFVARSTTLVYNTDQVEESDLPASILDLAKPEWKGRISFSPTGADFQAIVAGMLDLEGEQTTKAWLEGIKANGKVYDGNNLVLEAVNSGEVEVGIVYHYYWERDHKESGDVSDHSSQYYFGNQDPGAFVSVSGAGVLASSDMKTEAEKFVEFLVNEKGQQVLADSYALEYPLNPAVQLEGVAKPFDELQPPDVNVSDLDAKKVVDLMTEVGFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6F2</accession>
    <name>A0A0Q8V6F2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fe-S oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11415</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894927.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52997">
        <property type="protein sequence ID" value="KRC52997"/>
        <property type="gene ID" value="ASE19_11415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="647535at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004017">
        <property type="entry name" value="Cys_rich_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02754">
        <property type="entry name" value="CCG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CCG" evidence="1">
        <location>
            <begin position="3"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="CCG" evidence="1">
        <location>
            <begin position="134"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="246" mass="26232" checksum="27E195525FC5539B" modified="2016-01-20" version="1">MRVALMVTCVNDAMFPGTGQAVVRLLRRLGVEVDFPQAQTCCGQPMVNTGYLDEAVPAVRSFVRAFEGYDAIVTPSGSCAGSARHQHQLVAARSGDAGLAAAVAETSPRTHELTEFIVDVLGRTDVGAYFPHSVTYHPTCHSLRMLGVGDRPRQLLENVRGLRLVDLPKAEECCGFGGTFALKNSDTSVAMGSDKARHVRETGAEVLVAGDNSCLMHIGGVLDRGRSGVRVMHLAEILASTEEQPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6J4</accession>
    <name>A0A0Q8V6J4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16620</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893693.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50224">
        <property type="protein sequence ID" value="KRC50224"/>
        <property type="gene ID" value="ASE19_16620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1167152at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01509">
        <property type="entry name" value="HAD-SF-IA-v3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="204" mass="21878" checksum="EA30C33D74E31C99" modified="2016-01-20" version="1">MDGTLVDTEPYWMATETAIAEAHGGTWTHEDAMSLVGNDLLVSGEYIKAKLGLEQSPEEVVEMLLDGVVAQVRHSVPWCEGSRELLLALRRADVPCGLVTMSYQRFVAPILEHLPPETFRVIVTGDMVSQGKPHPEAYLTAAAALGVDPADCVAIEDSPTGARSAEAAGCRVLVVPNHVPVPDGSNRVFRDTLHGITPEDLATL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6S9</accession>
    <name>A0A0Q8V6S9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">D-glycerate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11990</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895028.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53100">
        <property type="protein sequence ID" value="KRC53100"/>
        <property type="gene ID" value="ASE19_11990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1638924at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029753">
        <property type="entry name" value="D-isomer_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00670">
        <property type="entry name" value="D_2_HYDROXYACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00671">
        <property type="entry name" value="D_2_HYDROXYACID_DH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2-Hacid_dh" evidence="3">
        <location>
            <begin position="9"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="domain" description="2-Hacid_dh_C" evidence="4">
        <location>
            <begin position="114"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="325" mass="34323" checksum="728B6862143BC9B7" modified="2016-01-20" version="1">MPDPHVFLTRPVSERVLQAARESLPATLRVHADTEWPPDRPALLDGSRGASGLITMLTDKVDDEVLEAAGPQLRVVANVAVGFDNIDVDAAARRGIIVTNTPGVLDEATADLTLALILSTTRRLVEADRFVRTATPWIWGPQSFVGLDLSAGATLGIVGLGRIGMATARRAHAFGMRILATGSRATSEEAKSLGVESVDLAQLLGRSDVVSLHCPLTEESRHLIGGEELAAMRKGSYLINTARGPLVDEEALADAIECGHLAGAGLDVHENEPRVNDRLRRMDEVVVLPHIGSAGAATRDAMAGMAVDNVVEVLSGRAPLTPVTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6V0</accession>
    <name>A0A0Q8V6V0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two-component system response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_11325</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895187.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52982">
        <property type="protein sequence ID" value="KRC52982"/>
        <property type="gene ID" value="ASE19_11325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="817710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="4"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="124"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="124"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="230" mass="24140" checksum="53E616419E3D548A" modified="2016-01-20" version="1">MDLRVGICEDDPALRRALRSALGYAGHEAVIAHTGAEALRLFGAAADLDVIVMDVGLPDADGRDVCQALKAQGQAAPVLFLTALGAVHDRLAGFSAGGDDYVAKPFDVKELLARIAVLGRRGRQLAVQRDDSGLVLDPATHTLRTDGGEVPLSPTEFRMLAAVAARPGEVVRRAAVVAAAWPDGAMVSDNTVDSLMRRVRAKLVEADAPASVETVRGVGYRLGLRTDAPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6W8</accession>
    <name>A0A0Q8V6W8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Haloacid dehalogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12190</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895059.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53132">
        <property type="protein sequence ID" value="KRC53132"/>
        <property type="gene ID" value="ASE19_12190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1374424at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006379">
        <property type="entry name" value="HAD-SF_hydro_IIB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01484">
        <property type="entry name" value="HAD-SF-IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="289" mass="30136" checksum="87192539B8FADB51" modified="2016-01-20" version="1">MTTPAPGEPGWRPRLVALDIDGTLLRWVAGLGMSHEEVTPAVHDAVQRVLDSGAHVVLSSGRAPHNMTAVADMLDLHGHGERLWIVAANGAVVLRYPPAEVVHEVTFDAAPAVAAVLAQHPEAIVAVEERGIGYRVSAPFPDGELGGESIVAAVEDMVARPVSRVIIRDPKATAEDFVKLAGNLGLHGTDYVVGWTAWLDLAPVGVSKASGLEYVAQQLGVDRADVLSIGDGRNDIEMLQWSGRGVAMGQAVDEVKAAADAVTDSVDDDGAAVEIGRWFPAGGSGGMGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Y1</accession>
    <name>A0A0Q8V6Y1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11215</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894897.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52964">
        <property type="protein sequence ID" value="KRC52964"/>
        <property type="gene ID" value="ASE19_11215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="685227at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01590">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GAF" evidence="1">
        <location>
            <begin position="80"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="401" mass="43292" checksum="56E4EA6FD276EEA0" modified="2016-01-20" version="1">MTQEPALHRMRAEIAASWERSAAAGVDVGQREAPVTLDAPDLAGQREAHPLARVFPLLDDVLGREVRDCGAVMALADAEGTLLWVCGDTENLRRAERIGFVEGSNWDERLAGTNAPGLALATGRDAFITRDEHFRSSVRPWSCAATPIHDPSTSQVLGVLDVTGGDEIVVPQTMAMVRAAARLAEAELARHLPRPPVADRPTGLRLLLELLGHNEALVTVDDGRGKLTRLRLTRRHSEIVALLAASPAGLTGDELAVLLYEEDGGTSTLRAELNRLRGLLGDELLASRPYRLTAPVTGDWLAVEAQLAAGDLHAAMQGYGGPVLPRSTAPGVVRLREGLAASLRQALLRSRAPELMSAWTRSGWGRDDYDMWLAQRATVPATSPMRALVEGQIARLDRELM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V701</accession>
    <name>A0A0Q8V701_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895077.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53150">
        <property type="protein sequence ID" value="KRC53150"/>
        <property type="gene ID" value="ASE19_12280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2109716at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="943" mass="96927" checksum="B48EB50E38786590" modified="2016-01-20" version="1">MPRRVWAWVAHVVAWSLLTVGVTVLVLDRRGGDDEPAAAEPPRYAAMPFPSTLSLNGTDRGRIGSRFRFTAEGFSDAGTTSVTLYDGSRVVDEVRLGTDRAGRGGALDLALPALSVGQHTVHAVVTDGDGKVAETAPVAVLVGAAPGEVDVPVVVPVLEDERPRDVAARLGVPVSALVGGIRGGALVVKVAPDAGASLVDGDEITVGPAASLGPFTLSAQASGCGVELHAEGVSAAITYYRGGGSTSGWVEVRSTVRDLSPGTHAFFARSGGRDSGTVEVTVPDRCAQGYGWTGDASVVDGVLTIPKAASGVFLHLSVDGRPWIRVPASQDEALDAGTKTSIAHLLPALDGRRLELEVWQSGEFPRRVATGQLRVPSDRSLASIVGEPSAVSLTVSTPDGERTGIQLGSQHQELTFTWTAASPAATRVRWQVLALDSRTSDLALSPSGLLASGVSEGDAKGTFTVDTADIPRADAEPEGGAVPKGTAVALKPPVPTGTLASTPAYASLVPVSALTDPSPPVELPVEGSTVYVRVVTETGPAAASPDVLVHLPVHQSKGTGVDFQVENLYLDAGRAPNPKAVGCLIVDVPWTLATRPTYESYGYGGVKGDLTTYVASQFYPQDGTWCPGAFPPPKGCDAWYCDVVDFVVDAAGVVVGVVVQVYELVSYAYNGVIDGVVSAIAKYNPLCVALGAADGGAGSGCETVVGFATRAAVTAVLASVGLPPSLPTTDQLEAIAAGELDQLAVEVMKQLGVPCDTAKAPAGFDTALASAGEALDAPVLGSAADPCLAVAHLLIGEVRERATADAERALADASGLPSFPDIKGFTMTADPRGRTDPLTVDVVASVVEADADPTGLFCQVVVHDPHRAGVQSVGPYGSFLIRLEPSSQDGRTWSGRGVRMPSGSDVVTRLQGASYDVGVRSQHPSECQIADTTGTVALRAPDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V782</accession>
    <name>A0A0Q8V782_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nitrobenzoate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11965</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895025.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53096">
        <property type="protein sequence ID" value="KRC53096"/>
        <property type="gene ID" value="ASE19_11965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1847197at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="1">
        <location>
            <begin position="20"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="241" mass="27436" checksum="BCEF758E999D167C" modified="2016-01-20" version="1">MVTARLTTVVNDPTSVEAAIESRFSCRAFLRDKPVSRNDIEEILHVARQSASGVNTQPWRVYVLQDQSRDDLVSQVCEADDAVFANPASAEKYRDQPDYYPQEWVSPYIDRRRQNGWSLYSLLGISKGEKEKMHAQSQRNYHFFDAPVGLIFTIDRVMGRGSLLDYGMFLQNIMLLARARGLHTCPQAAWNYYPKVILPFIGAGEEEVLVCGMALGYADESARVNTLETPRETVESFTRWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7H3</accession>
    <name>A0A0Q8V7H3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">NosD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13625</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897122.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53381">
        <property type="protein sequence ID" value="KRC53381"/>
        <property type="gene ID" value="ASE19_13625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1177619at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007742">
        <property type="entry name" value="NosD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006626">
        <property type="entry name" value="PbH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05048">
        <property type="entry name" value="NosD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00710">
        <property type="entry name" value="PbH1"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359777" description="NosD domain-containing protein" evidence="1">
        <location>
            <begin position="25"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="domain" description="NosD" evidence="2">
        <location>
            <begin position="70"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="440" mass="44563" checksum="12B3D44031485450" modified="2016-01-20" version="1">MKIAAARLLLASLVALAAAGCSDGADEEAPAAKQALVEVPGDAATIGEALDLVAEDGMVLVGPGTYREQVLVRTPGVTLRGTDRNAVVITGEGTRTAGVVGIADGVRVQNLTVTDTLLYGVLITGTHEGDEVLTPAEHGYDEFDPAAFPPLQRFRVDHVTATNNGLYGIYAFNTQHGVIADNWASGSADSGIYVGQCRDCDTLVQGNVTARNAVGFENANASDSLTVVGNQLSHNRVGMTLTSNYQEAFVPQHGNLVAGNVIADNDEPQSPEQADGGFGIGVGIAGGQDNVLVRNLITGNPLVGVLLDGAEDVPSTGNRIADNLLAGNGADVANVSLPAAATAGTCVVGPASLRLVPAGLGLGCAAGVDPAATSADLPQLSAPAGVAFLDVPRPGALPSMTDTRQAPTPLPATIERPAADAVRRPATDLLAAVLRAGGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7I5</accession>
    <name>A0A0Q8V7I5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Long-chain fatty acid--CoA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13305</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895788.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53326">
        <property type="protein sequence ID" value="KRC53326"/>
        <property type="gene ID" value="ASE19_13305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="9"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="425"/>
            <end position="500"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="518" mass="56127" checksum="D608FE6628F44D37" modified="2016-01-20" version="1">MAVIDFFDRGWRGNPDGIAYVQDDRTYTFQEAGELSCRVANALLADGLPSGTKGAVWAGNDVTAWVCTLGLWRANMTWLPVNARNSPEENLRILDAFDCEVVFFQAAFAPLLGDLRERLPKVLRWVCLDGEVPGAVTLDAWLDGQSTADPALVVDLDDVVSISPTGGTTGPPKGVMNTHRSMQTFIAHFLMAFPYGPEERPVNLAAAPMTHTAGALSLPTTARGGTVVVVTSPQPDVLLDQLVKQQVTELFLPPTVIYRLLEAPGIELVDVSSLKYFLYGAAPMSVEKLKKAVEVFGPVMAGGYGQTEAPASIAFLPPAEHFRGDVLATDERLSSVGRPSPLVRVEILDDDHRVLGPGETGEICVRGDLVMKGYYNAPEQTAETIVDGWLHTGDVGHLDTEGYLHITDRKKDMIITGGFNVYPSEVEQVIWSHPKVQDCAVIGTPDEQWGEAVKAVVELNPGETLDGNELIALCKARLGSVKAPKSIDFVDALPRSAVGKVLKKDLRATYWARAERAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7R2</accession>
    <name>A0A0Q8V7R2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_14075</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53461">
        <property type="protein sequence ID" value="KRC53461"/>
        <property type="gene ID" value="ASE19_14075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd05829">
        <property type="entry name" value="Sortase_F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033764">
        <property type="entry name" value="Sdr_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005754">
        <property type="entry name" value="Sortase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023365">
        <property type="entry name" value="Sortase_dom-sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042001">
        <property type="entry name" value="Sortase_F"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17210">
        <property type="entry name" value="SdrD_B"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04203">
        <property type="entry name" value="Sortase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63817">
        <property type="entry name" value="SSF63817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="SdrD_B" evidence="4">
        <location>
            <begin position="607"/>
            <end position="737"/>
        </location>
    </feature>
    <feature type="domain" description="SdrD_B" evidence="4">
        <location>
            <begin position="743"/>
            <end position="870"/>
        </location>
    </feature>
    <feature type="domain" description="SdrD_B" evidence="4">
        <location>
            <begin position="876"/>
            <end position="990"/>
        </location>
    </feature>
    <feature type="domain" description="SdrD_B" evidence="4">
        <location>
            <begin position="996"/>
            <end position="1121"/>
        </location>
    </feature>
    <feature type="domain" description="SdrD_B" evidence="4">
        <location>
            <begin position="1128"/>
            <end position="1253"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="80"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="677"/>
            <end position="712"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="952"/>
            <end position="980"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1087"/>
            <end position="1111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="952"/>
            <end position="974"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="1087"/>
            <end position="1107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF17210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1545" mass="160350" checksum="E44AA2D34115B8C1" modified="2016-01-20" version="1">MGTPVPVAQAAPGDGTVKVRVVQDYNGDGGWDDAFIEPGLVGVDVDVTNEAGVTQTLQTGADGLLTFEGPPGSYRFVAHNPDPATLEPAPAHESDASADTPAAKWLSPNEEFVTVAANQTVEMTTAFWDSSDYCQSNPLIVTACQPPMFNGAGGLADNANGDTLVTAPFRGEGVDTGKAVLSNKAATGALYGIGYRKQDKRVFAGAFAKRGSAYGPGGSGAIYVTNASGGGATLWGTVPNTGTRAHTNDTLPGGRLDWNFAPAVGKESLGDLDVSEDGDDLQVINLFDRKLYVYDASDATAGAPTHVVDLSANPGCAAASDWRPAALGERKGVLYVGGVCSAESSQNPADMKAIVLTYDADTYAPVEKVMDQTLTTRRELNGGSGCVGRDNTTYRPWSDVGIACANKSGQIPDPQAWMTDIVVENNGDLIVGFRDRTGDQMLGVNSTYFADTTGTGGSTVGVVNYNVSGDTNKACPTPGSDGMFVLDLNGACGVAAVPAGQFAGEFFNGDGTIHAEASFGGIAFSRGERGIASNVMDPFGIFTQGYATMSRGTGQSLDTVGDGATGDPDEVPHNAGNAGNRLTGSDGFGKGQGMADMEVICDFAPIQIGNRVWNDADADGIQDAGEDGIAGVTVNLYAADGTTLVATTVTNSRGEYYFDSVDDDVDFNTDYVVRLDKPEDHTGSGPLAAVGLTGADEGTGDDQDRLDSDGTKVAGYPQAEITTGNRGENDHTIDFGFKPASVSVGNLVWIDSDGDGIKEAGEPGLQGVVVKLTDQNGDPVTDVSGNPVGPVTTDANGHFLFDGLPVLAAGEYYTVTIDQTAPSTIDALAPYNPTAAGQGGDPALDSSLWTANSAELTTAGAKDLTLDFGFAPKPVSVGDFVWVDLDGDGVQDAGEPGIPGVTVKLLDNDGVEIGTTTTDANGFYSFTDLPVNEDGEHYAVTIDNDQPALAAYKPTQTGQGTGADDSSNGRADARSLTDPQDRDMTLDFGFVPAEVSVGDYVWLDKDRDGVQDGNEDGIEGVVLTVVGPDGDPVTDIHGNVVGPVTTDANGHYLFDELPVLPAGQHYTVKIDRDAPATVAALGDLLPTQTGQGTSATDSSTWQATSGDLTEDGDEDVSLDFGFVEPSVSVGDLVWVDKDKDGTQDAGEPGIQGVVLRIVGPDGNPVTDVFGNPVGPRTTDADGGYSFDDLPALPSGQHYTVKIDRNATSTKDALAQYVPTVTGQGNAANDSSTWQAESGDLDEDGDVDATLDFGFAYAPPALVTQAAKTVQLAVTASGTPVARPLTDKVTVTGLDAPAQATAYLYGPTATRSSAMCTPARLVGKVSFTVGNGTTTSPGIKVGRPGVYTWVVKVEDVTGGVVSHGCGLANETTTVQRAAYGPIAIETGVRPPFWARLAAPTTQLRIAKVGIKAGVRTVGVNRKRQMVIPDGSGTVGWLNRSAAVGDLIGTSIIAGHVSDHHDTPMAFWKLRNAKVGQVVTITKNGKRFEYRITARAKYARSKGIPASVFRTNGAHRLVLVTCADKVTYRNGRFHYRNNLVVTAVPVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8H8</accession>
    <name>A0A0Q8V8H8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Penicillin-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_14735</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896924.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53578">
        <property type="protein sequence ID" value="KRC53578"/>
        <property type="gene ID" value="ASE19_14735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="423699at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005311">
        <property type="entry name" value="PBP_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036138">
        <property type="entry name" value="PBP_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03717">
        <property type="entry name" value="PBP_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56519">
        <property type="entry name" value="SSF56519"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359810" evidence="2">
        <location>
            <begin position="23"/>
            <end position="637"/>
        </location>
    </feature>
    <feature type="domain" description="PBP_dimer" evidence="4">
        <location>
            <begin position="153"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="3">
        <location>
            <begin position="358"/>
            <end position="632"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="637" mass="65410" checksum="5FC9A1D6548C521A" modified="2016-01-20" version="1">MRRLSAALKTGLVLLLPVFGLAACSGDDEGEARAAVQSVADALMGAADGSADKALFADEPFTGTDGEMVLAEYTKIIDGMDGLVPKVSVADVDTEAETATLTWSWPVADDADPWTYDTTVDLAHTDAAWTVAWAPSVVEPSLIDGDRLEVTSEPTTRGDITGAGGAELVTARPVVRVGIDRTLVGAARAPASAKALAELVDIDVASYVKAVKGAGAKAFVEAITYRAGDVPGAVRSRIPSITGARQIDAELALAPTRDFAAPILGRVGPVTAEMVEKDPEAYQPGDVAGVSGLQARYDEQLRGTPGRIVRAVPGDQGADDRELYVQEPVAGKPLALTLDRRLQSLAERVLDGVGPASALVAIRPSDGSILAAANGAGTDGQNYATYGQFAPGSTFKSVTSLALLRAGLEPTSQVECTPTTTVNGKRFKNYSDYPSSSIGTIPLQEAIAQSCNTALINARGKVRDGDLAAAAASLGLGIDHDLGFPAYFGEVPKPSGETEAAADLIGQGKVLASPMAMATVIASVQAGRTVVPHLVGGIDVSVPAAAKPLTAAEARQLKALLRRVVTDGSGRGLADLPGGPVIAKTGTAEYADGGTVRTHAWMIAAQGDLAVAVFVQTGQSGSRTAGPLLEEFLRGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9I0</accession>
    <name>A0A0Q8V9I0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07000</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895261.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53830">
        <property type="protein sequence ID" value="KRC53830"/>
        <property type="gene ID" value="ASE19_07000"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="65" mass="7023" checksum="FB273123AB7E3015" modified="2016-01-20" version="1">MRVVADTGICQGHQLCQGEAPTVFGFDEDADVVVLLDEHPDEALRADVTTAVKYCPAFALSIEED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9S9</accession>
    <name>A0A0Q8V9S9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_08530</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895526.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54094">
        <property type="protein sequence ID" value="KRC54094"/>
        <property type="gene ID" value="ASE19_08530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="3">
        <location>
            <begin position="47"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="4">
        <location>
            <begin position="128"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="368"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="391" mass="41270" checksum="9B4D43D18BB039C0" modified="2016-01-20" version="1">MTVLLKGAAPIIKKQLIAFSIAAVVGTVVLAVSFLRVPEQLGIGRHTVQVEFAQAAGLYPGAEVVYLGHPVGKVEDLELSGDHLVAELSLVDDVEVPAEVTAEIHSRSAVGEQYVSLVPPREAASSGPALADGDRIPVDRTSYPVEIGPVLDNVQALVASLDEKKLSQLVDESGAALAGRAGDLQTILDASSRLIAEADVNFRPTAALLRQVGPVLATVNGEGDGIRRLTASLDQVTTELRSGDEDLRGLLEGGPGFSQQTLAFLDDLSVSLPVLLARTNPVLAVLRTYNAHLAQTLSDYPLAASIVQSVTLPDSATHEVRLTVANVNKPPECVQGALPGKDWASPFDNSPRRTPLIYCTAPHNDPRGVRGARNLPCPNDPARREGDVSKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Y1</accession>
    <name>A0A0Q8V9Y1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07820</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895405.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53974">
        <property type="protein sequence ID" value="KRC53974"/>
        <property type="gene ID" value="ASE19_07820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1658396at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="169" mass="17948" checksum="5555432A74B9557C" modified="2016-01-20" version="1">MSTPSRPAFGAGSPLKLEFPQSLAVYDDYAAAQRAVDFLSDEKFPVEQCMIVGTDLKRIERITGRLTTGRVAAGGIMSGLWLGLFIGLVFSIFTDEKTLAVILSTMVIGAGFGVVMALVGYAMSGGRRDFSSVSAVVATRYEVLVEHKGAAQARELLAKLPGALPNPFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA27</accession>
    <name>A0A0Q8VA27_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Endonuclease III</fullName>
            <ecNumber evidence="10">4.2.99.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">DNA-(apurinic or apyrimidinic site) lyase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">nth</name>
        <name evidence="12" type="ORF">ASE19_08190</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>2'-deoxyribonucleotide-(2'-deoxyribose 5'-phosphate)-2'-deoxyribonucleotide-DNA = a 3'-end 2'-deoxyribonucleotide-(2,3-dehydro-2,3-deoxyribose 5'-phosphate)-DNA + a 5'-end 5'-monophospho-2'-deoxyribonucleoside-DNA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:66592"/>
            <dbReference type="Rhea" id="RHEA-COMP:13180"/>
            <dbReference type="Rhea" id="RHEA-COMP:16897"/>
            <dbReference type="Rhea" id="RHEA-COMP:17067"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:136412"/>
            <dbReference type="ChEBI" id="CHEBI:157695"/>
            <dbReference type="ChEBI" id="CHEBI:167181"/>
            <dbReference type="EC" id="4.2.99.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="10">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the Nth/MutY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.99.18" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895472.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54040">
        <property type="protein sequence ID" value="KRC54040"/>
        <property type="gene ID" value="ASE19_08190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1381897at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140078">
        <property type="term" value="F:class I DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019104">
        <property type="term" value="F:DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00942">
        <property type="entry name" value="Nth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004036">
        <property type="entry name" value="Endonuclease-III-like_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003651">
        <property type="entry name" value="Endonuclease3_FeS-loop_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004035">
        <property type="entry name" value="Endouclease-III_FeS-bd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000445">
        <property type="entry name" value="HhH_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005759">
        <property type="entry name" value="Nth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10576">
        <property type="entry name" value="EndIII_4Fe-2S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00633">
        <property type="entry name" value="HHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00525">
        <property type="entry name" value="FES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01083">
        <property type="entry name" value="nth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00764">
        <property type="entry name" value="ENDONUCLEASE_III_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01155">
        <property type="entry name" value="ENDONUCLEASE_III_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 10" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4 10" id="KW-0227">DNA damage</keyword>
    <keyword evidence="8 10" id="KW-0234">DNA repair</keyword>
    <keyword evidence="10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="12" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="9 10" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="5 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 10" id="KW-0408">Iron</keyword>
    <keyword evidence="7 10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="10" id="KW-0456">Lyase</keyword>
    <keyword evidence="3 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-0540">Nuclease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ENDO3c" evidence="11">
        <location>
            <begin position="50"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="209"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="215"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC54040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="238" mass="26312" checksum="ADD0E6E0E57F772F" modified="2016-01-20" version="1">MRPIDITEETPTQLVRRARKIDRVLAQTYPDAKAELDFDDAFQCLVVTVLSAQTTDKRVNLVRPTLFAAYPDPASMAAADRAHLEQIVGPLGFFRAKTESLLKLSAALVERYDGQVPGRLDDLVTLPGVGRKTANVVLGNAFDVPGITVDTHFGRLARRLGWTEETDPVKVEHAIGALFPKRDWTMLSHHLIWHGRRRCHAKKPACGACPVARWCPSYGTGPTDPVEAEKLVRTEGPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA34</accession>
    <name>A0A0Q8VA34_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_08590</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895538.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54106">
        <property type="protein sequence ID" value="KRC54106"/>
        <property type="gene ID" value="ASE19_08590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041490">
        <property type="entry name" value="KstR2_TetR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17932">
        <property type="entry name" value="TetR_C_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="6">
        <location>
            <begin position="24"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4">
        <location>
            <begin position="47"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="213" mass="23732" checksum="47D8081E9FB5DF82" modified="2016-01-20" version="1">MAKKSGSPTVASNAEGKTLDKKSARTRVRILDAAAQVLSAKGYAGMRLSDVAEVAELQAPAIYYYFPSRDDLIEEVMWVGLADMREFLTKALGDVPADATALDRILVAVETHLRHELEISDYTTAAIRNAGQLPDHIRERHDAEERKYGAVWRELFKRAADAGELREDLDPYLAQMLVMGTINWAAEWWQPSRATIDRVVANAQSYVRSALTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAQ9</accession>
    <name>A0A0Q8VAQ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Carbonic anhydrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09020</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895612.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54180">
        <property type="protein sequence ID" value="KRC54180"/>
        <property type="gene ID" value="ASE19_09020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1242595at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="175" mass="18126" checksum="A066C4799CD359A1" modified="2016-01-20" version="1">MFAYEFEGKSPQVHPEAFVAPTATLIGDVRIEKGASVWYGAVLRADICTIIVREGANIQDNSVVHGGPDVVVEIGRNSTVAHACVFHGDSLGEKGLIGNDTTVLDGATIGAGSLVAAGSLVAPGTHIPDGVLAAGSPAQVKKPIEGTGAAFWVETNAPYYAELARRHREGVKPVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAU2</accession>
    <name>A0A0Q8VAU2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">NAD kinase</fullName>
            <ecNumber evidence="5">2.7.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">ATP-dependent NAD kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ppnK</name>
        <name evidence="5" type="synonym">nadK</name>
        <name evidence="6" type="ORF">ASE19_17250</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + NAD(+) = ADP + H(+) + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:18629"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the NAD kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.23" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893903.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50375">
        <property type="protein sequence ID" value="KRC50375"/>
        <property type="gene ID" value="ASE19_17250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1463423at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003951">
        <property type="term" value="F:NAD+ kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019674">
        <property type="term" value="P:NAD metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006741">
        <property type="term" value="P:NADP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.200.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00361">
        <property type="entry name" value="NAD_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017438">
        <property type="entry name" value="ATP-NAD_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017437">
        <property type="entry name" value="ATP-NAD_kinase_PpnK-typ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016064">
        <property type="entry name" value="NAD/diacylglycerol_kinase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002504">
        <property type="entry name" value="NADK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01513">
        <property type="entry name" value="NAD_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111331">
        <property type="entry name" value="SSF111331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 5 6" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 5" id="KW-0520">NAD</keyword>
    <keyword evidence="3 5" id="KW-0521">NADP</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5 6" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="79"/>
            <end position="80"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="153"/>
            <end position="154"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="194"/>
            <end position="199"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="34791" checksum="D88AC7C1ABE69DA5" modified="2016-01-20" version="1">MDGIRRVLVLAHTRRAEARDVARAFVKELSGHGIVVRLLRSEADELELDPAGYFPEVELTDSETDASRGCELTVVIGGDGSILRAAEVTHTRLTPVLGVNLGHVGFLAEAEHEDVAATIDAIVHQRYTTEDRLTLDVRAFVEGELVYSTFAVNEASVEKAARERMLEVVIEIDDRPLSRWGCDGVVCATPTGSTAYNFSAGGPVVWPQVEALCIVPLSAHALFARPMVVAPSSTIAIEVLDGNESSGVLWCDGRRSVDLPPGARIEVSRGVRPVRLVRLHEAPFTDRLVAKFGLSVEGWRGAAELRRQLRQGGSPATGERE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VB04</accession>
    <name>A0A0Q8VB04_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">L-threonine dehydratase</fullName>
            <ecNumber evidence="11">4.3.1.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Threonine deaminase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">ilvA</name>
        <name evidence="13" type="ORF">ASE19_10415</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10 11">Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>L-threonine = 2-oxobutanoate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:22108"/>
            <dbReference type="ChEBI" id="CHEBI:16763"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="EC" id="4.3.1.19"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 11">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 11">Amino-acid biosynthesis; L-isoleucine biosynthesis; 2-oxobutanoate from L-threonine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 11">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the serine/threonine dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.1.19" evidence="11"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894752.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52819">
        <property type="protein sequence ID" value="KRC52819"/>
        <property type="gene ID" value="ASE19_10415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1876944at2"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00054"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004794">
        <property type="term" value="F:L-threonine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1020.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011820">
        <property type="entry name" value="IlvA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000634">
        <property type="entry name" value="Ser/Thr_deHydtase_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001721">
        <property type="entry name" value="TD_ACT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038110">
        <property type="entry name" value="TD_ACT-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00585">
        <property type="entry name" value="Thr_dehydrat_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02079">
        <property type="entry name" value="THD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51672">
        <property type="entry name" value="ACT_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00165">
        <property type="entry name" value="DEHYDRATASE_SER_THR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 11" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="6 11" id="KW-0412">Isoleucine biosynthesis</keyword>
    <keyword evidence="8 11" id="KW-0456">Lyase</keyword>
    <keyword evidence="7 11" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT-like" evidence="12">
        <location>
            <begin position="348"/>
            <end position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU362012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC52819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="432" mass="44796" checksum="D342FF17A03FC3A5" modified="2016-01-20" version="1">MPDVEGTRLPTAADVDRAAGLLGSVIPPTPLQRADRLSALTGLDVWLKREDLTPVRSYKARGAYTVLAGLTDEERSRGVTCASAGNHAQGVAFACARAGVRATIFLPRVTPRQKRDRVAALGGDMVEVVIAGEAYDDAAVAAADFAAASGATSIPAFDHPGIIAGQGTVAAEILDQSAALGWQPDALVLPVGGAGLIAGCLTVLAERLPGVCVVAAEPSGAASLAAALQSGGPVELASVDPFVDGASVRRVGDLTYAAVAGARSSVSLSLASVPEGLICVEMLDLYQADGIIAEPAGALAASALRLDEVRAHLAPGSRVVVVVSGGNNDVSRYADIVERALVFEGLKHYFLIEFPQEPGALRRFLDDVLGPDDDITLFEYTKRNNRETGPALVGVEMRHRDDLAGLLARMEASRLTVEKVPPNSPLFGLLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VB73</accession>
    <name>A0A0Q8VB73_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10860</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894831.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52899">
        <property type="protein sequence ID" value="KRC52899"/>
        <property type="gene ID" value="ASE19_10860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="167885at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="837" mass="89430" checksum="A4AB5C63A69ED780" modified="2016-01-20" version="1">MAQESRTEQGLVRRIGVAGAVAAVLVGVAVSLPTGGGGVTSLAAAVEQQKSAQGIPHDDALLAPHNHNDPATKNDVSRGLAVGEEAVDPTTAAERTAAEAYVDEQRALPDPNLVHVAAYPARTAVPADRYAMAGGCYALTGAGKAFGPYYFKATRLGGYLLHTPQGELAVQGTGVGVAAKPSAAADWTATKVVGGFRFDVGLGKALTVVAGKLTKGAGTTFSLRTATGCPSYPEADINVTGDPFAGETTYQEVRGFVDAHTHGMAFEFLGGKVHCGRPWHAYGAPYALVDCPDHTFTQGKGALLESVLSGEASHDPVGWPTFKDWPAPESLTHEGTYYRWLERAWRGGQRVFVNLLVENNKLCQLYPLKRNSCDDMTSIRLQAKDMRIMQDYIDAQFGGPGKGFYRIVKDPFEARRVINSGKMAVVMGIETSIPFGCTYKKLLGKDFPACTTAEIDANLDEMRALGVRQMELVNKFDNALAGVAGDAGAIGPLVNTANFLETGSFWAMEHCEPADGESADNPQIAVLPDLDADQQDALFGAVGKILGLLPATPLYGPPAHCNKRGLTELGVHTIKGMAQRNMIFDPDHLSVKARAASMDVIEDLAYPGVISSHSWSTPDTYPRIYKAGGFITPYAGDSTGFVAKWRRHLGWADSRYYFGFGFGADINGLGAQGNPRGADVANPVTYPFTGLGGVTIDKQQAGQRTWDINVDGVAQYGLYPDWVEDLRRIADAQNAGDGEKIVDDMARGAEAYLQMWERSYGVRADSCRNADLRKSVSEVQGLVRTGMTTEAVLRAVGQPFERLGTTYSFCARTATRAKVPVRVSFTSAGKVSGLAFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBZ4</accession>
    <name>A0A0Q8VBZ4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Nudix hydrolase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894336.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54746">
        <property type="protein sequence ID" value="KRC54746"/>
        <property type="gene ID" value="ASE19_04510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1308416at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="1">
        <location>
            <begin position="46"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="181" mass="19741" checksum="40364A2866CD18FD" modified="2016-01-20" version="1">MSGLHTDALRVLADWRAPDAAEEALRVRYVRHLESTPDGMWRASYPDHVTAGTLVIDATGDNVLLNLHRKAGRWFHFGGHAEEADATLAAVALREAHEESGLTALAFHPEPVQLDLHTVPFCGDRGGVNHLDVRYVAAAPAAAEAVVSDESLAVRWWPVDALPELEPAMHALIARAREILL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCI7</accession>
    <name>A0A0Q8VCI7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05665</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54938">
        <property type="protein sequence ID" value="KRC54938"/>
        <property type="gene ID" value="ASE19_05665"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="155"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="185"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="216"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="246"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="272"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="157"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="303" mass="31338" checksum="CBFAFE7EB084CB8D" modified="2016-01-20" version="1">MRPTPGPYGVRVTHDHRRPALGTAVGLVLLGIASVQLGAGFAKLLFDDIEPNGVVWLRLATSAVVLLLWVRPRLTGRTRADWLVVARYGACLGTMNWAIYQSFSRIPIGVAVTIEFIGPLVLAAVGFRRPRDLAWVALAAVGVLLLGFERGHLDAAGVGFALLAGAAWAGYIVSSAATGEHWPGIDGLAVAALIAVLMLSPLLVTVDGSALVDRRVLLIGAAVGLLSSVVPYTAELVALRTVPAATFGVLMSLEPAAAALAGLAVVGEDLAAVQWAAIGCVVVASVGATRATRTPIHPDVTSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCR0</accession>
    <name>A0A0Q8VCR0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05370</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894195.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54886">
        <property type="protein sequence ID" value="KRC54886"/>
        <property type="gene ID" value="ASE19_05370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="746668at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="488" mass="53382" checksum="13F9466CA920CA31" modified="2016-01-20" version="1">MTDLYPPLPDGQVQWVEPPRRGRHKTIALLVAGLLLVGSAVAFGVWWMQRGPDYPDAWDSRVVPYVEVVEKQRGLEFEHPVHVDFLTDEEFDQEVTSDDSELTDEDREEIRQTEAMMRALGLLDADVDLLKASNDLAAGGVIGLYDYEDKRIRMRGTELTPAVRSTLVHELTHVLQDQHFDLEEKSEEHEADDDSSAAAMWQAIVEGDASRVEDDWARTLPAAERKALAREQAKESRQARKDLAKVPAFLTTLTSSPYVMGDALLALAIQLDGKGAVDSLFTSPPTSEEGLVDPWIAVADRQAAWPVDEPDVPEGAKEFDSGTFGSPSWLYVLAERIPPKVALTAADGWGGDAYVAYEQAGRTCVRIDYVGDSRRDVTELRGALRAWVAGSPRGTSKVTQQGTGLRLESCDPGKRARRGTGGSEDALQLALTRAQVAVQVLPTAGLQKSFVRCYADAAVHELSLAELAADKAPPGLQARLERLARGCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD45</accession>
    <name>A0A0Q8VD45_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05690</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54943">
        <property type="protein sequence ID" value="KRC54943"/>
        <property type="gene ID" value="ASE19_05690"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017196">
        <property type="entry name" value="ECF_substrate-spec_UCP037395"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024529">
        <property type="entry name" value="ECF_trnsprt_substrate-spec"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12822">
        <property type="entry name" value="ECF_trnsprt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037395">
        <property type="entry name" value="UCP037395_ABCper"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="163"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="236"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="280" mass="29305" checksum="063E42FB4CDC432F" modified="2016-01-20" version="1">MTDGIAVPLAPRSRLVLVIVSVIGLLMLAWPLLLDVDPTAERVDPPFLFLALLPLILAVVAAELSEGGMDARVLALLGVLSAVNAVLRLLSAGTAGLELVFFLLILGGRVFGAGFGFVLGCTSLFASALMTAGVGPWLPFQMLVAAWVGMGAGLLPRRFTGRAEIVVLAVYGVLSAYLYGLLMNLQGWPFIAGVQVPGQDSTELSYVPGAPVLENLHHFLVYTLLTSTGGWDTGRAITNALAVALLGPAVLTTLRRASRKARITRAPVVNSGHVEADAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDA7</accession>
    <name>A0A0Q8VDA7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">S5A_REDUCTASE domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_12970</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895847.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53667">
        <property type="protein sequence ID" value="KRC53667"/>
        <property type="gene ID" value="ASE19_12970"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001104">
        <property type="entry name" value="3-oxo-5_a-steroid_4-DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010721">
        <property type="entry name" value="DUF1295"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32251">
        <property type="entry name" value="PTHR32251"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06966">
        <property type="entry name" value="DUF1295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50244">
        <property type="entry name" value="S5A_REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="33"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="62"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="117"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="142"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="195"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="222"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="domain" description="S5A_REDUCTASE" evidence="6">
        <location>
            <begin position="149"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="268" mass="28438" checksum="6BFEC53C447BAEDE" modified="2016-01-20" version="1">MASVLVSLGTALAAAALVMGVTAAAAQRQGRVAIVDVAWGLGFVVAALACGAVALARDTGDPLRTCFLVAIVVVWGLRLAAHIHRRSAGHRDEDPRYEKLLGGPLSAVGIGVAVRKVFLVQGLALALIALPVAVGVVLEVRWWPLVVAGGVLWLVGLVFEAVGDAQLAAYRAQPRETRPQVLDSGLWAWTRHPNYFGDACVWWGTWLAGGLASGWVAGLATLVAPLAMTYFLVFATGARLLEQTMMQRPGYPEYAARTSGFVPRPPRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDH4</accession>
    <name>A0A0Q8VDH4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">DNA methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_15150</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the N(4)/N(6)-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896543.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51479">
        <property type="protein sequence ID" value="KRC51479"/>
        <property type="gene ID" value="ASE19_15150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1487464at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006306">
        <property type="term" value="P:DNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002941">
        <property type="entry name" value="DNA_methylase_N4/N6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002295">
        <property type="entry name" value="N4/N6-MTase_EcoPI_Mod-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01555">
        <property type="entry name" value="N6_N4_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00506">
        <property type="entry name" value="D21N6MTFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N6_N4_Mtase" evidence="4">
        <location>
            <begin position="26"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC51479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="390" mass="42992" checksum="631733DD28DA2B40" modified="2016-01-20" version="1">MEPAWNTFVEGDNLDVLATLPADSFDLVYIDPPYNTGNDFAYRDDFRGERGEGARGRHAAWLAFMRPRLEAGRRVLAPTGAIFVSIDDHEAAYLRLLLDEVYGEENFLAQVVVNLNPKGRQLGRGFATSHEYLLVYARDAEQCVLDASSASTVVESDFPLEASDGRRYRRLPLRNTNKKFNPLTAPTLHFAVWGDPSSGRVSTAPFDGAVEIKPVFGDGTPAVWRWSRPRIDERPDDLECRAVRGPRGERVDVFQRDWRHPVGGRRKKLRTIWLAEEIGSTDTAVAELKDVLGHVFESPKPTGLVRRILDTMPADARVLDYFAGSGTTGHAVALANAADGGVRTCLSVNAPEPTRVGSNAERAGYATVSAITRARLRAVADQVGGGYRER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEG0</accession>
    <name>A0A0Q8VEG0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amino acid-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11655</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894970.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53040">
        <property type="protein sequence ID" value="KRC53040"/>
        <property type="gene ID" value="ASE19_11655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2051057at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT" evidence="1">
        <location>
            <begin position="4"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="202" mass="21559" checksum="256E1AC8CEECF017" modified="2016-01-20" version="1">MPFLLRVLLPDVPGSLGRVATAIGMAGGDIEAIEIVEKREDGTAVDDVLLEVAQGMMPDSVVSACSALEGVEVLWISRYPAGGNLVMDLEAVEELTASPEQAFDKLIDLLPATFRVDWAARVHRAKGVVYGTSAAPEEIEFVEIESPVRLEMPEDEVTLYAASRLDGNEIVVIGRRGGPEFADSEIARLGHLCGLAVTIANS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFA9</accession>
    <name>A0A0Q8VFA9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12480</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895112.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53185">
        <property type="protein sequence ID" value="KRC53185"/>
        <property type="gene ID" value="ASE19_12480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1705234at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019674">
        <property type="entry name" value="Lipoprotein_LpqN/LpqT-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10738">
        <property type="entry name" value="Lpp-LpqN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359988" evidence="2">
        <location>
            <begin position="25"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="229" mass="23587" checksum="BF0B95D8A0FE050E" modified="2016-01-20" version="1">MKKPSRLAVVPTVLLLALGLAACGDDKTDADARKTPSASPTSSSPSADDSSEPPAAEPTTIPEYLEQAGVQQTLLDRENDEIAVEIPVPDGWSPTDAYADAASYGAIAFDGAADANDPPRVLGILARLDGDADPAKILEYAPGELQALEGFTPMNMGGDASTLGGFDAVQLGGTYTDGGQELVVAQKTVVIPAESALYVLQLNAYAPSAELDALVAAMKVIDEQTTITP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFN1</accession>
    <name>A0A0Q8VFN1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13060</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895743.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53281">
        <property type="protein sequence ID" value="KRC53281"/>
        <property type="gene ID" value="ASE19_13060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="288" mass="31469" checksum="DC1DA592F160EF92" modified="2016-01-20" version="1">MTPVEERRVEERLVAALDARAGQVTATSLAPAALPSHRPRSVAPWLAAAAVLLVVAGIALAVRPDRSASPDPMPTPLPTPAPTLAELPALEPLHPAMAKEKWYDVGEVYSPNGRDTLPTVDLQEDANGSIVLFWGLSGVGASVTLGHDDGVTERWRLLGATTRDGGFGGGFLVVHEEHQLTSGLLNLVPTGYRWVVHSAARDRLELVVLRTPRDRTFGPDNLWLDRAGDVMTWESLDTRPDTRTRQQVRVFQWHVEGRRAVPTELGTYCVRPVTPKDAMDTVRLPRPC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGE3</accession>
    <name>A0A0Q8VGE3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11760</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53058">
        <property type="protein sequence ID" value="KRC53058"/>
        <property type="gene ID" value="ASE19_11760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1992857at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="256"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="124"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="200"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="10"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="316"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="395" mass="42088" checksum="52C3E5A72ACFDE63" modified="2016-01-20" version="1">MAGDNGRIWGDEGSVDDDLRPDLGRRDEAPNDPLSGVYEPNEALDGAFAPPEPAEEPAPEPAEDSWTDATMDHPAVPAADASADDESPAADREPAPAPSSYDEPERGTTPAPSAQHFQDVIALRREAEEAAAAALSERREATSQASRIIEEALRAAENLHADAQRSLDEKRTAAETEASTILERARAEAAEIIKAGENDVLEAQRLRREAGAERDRLNAELERIRRTAQEELFAEANRHTARMDEIRTRVLHGVEAATDSLRASDRGVTRADDEPAAVEARPTFVTPPPAEPAAAQPATQTAAPEPTREPTREPTHVWSPPQPAPAPAAPTAPAAPAPTAEDLLSSLGGTTPAPGIPANAPITPYTPGSSSAPAVSPDHDSDDEPHRKRGWRRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGY4</accession>
    <name>A0A0Q8VGY4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RNA polymerase subunit sigma-24</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_13955</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53681">
        <property type="protein sequence ID" value="KRC53681"/>
        <property type="gene ID" value="ASE19_13955"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="32"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="7">
        <location>
            <begin position="136"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="203"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="238" mass="25215" checksum="67170BAD54BF31A7" modified="2016-01-20" version="1">MPEASAEVDDVVTDADLLAAHVAGDDAAFGILFARHRDRLWAVALRTCSDPETAADGLQEGMIAAFRRAGSYRGEAAVTTWLHRIVVNACLDRLRAAKVRRAEPLPDDLDEARPVRQAPTDAVDPAQHVLATERRGRVHAALRQLPDEQRAAVVLVDMEGYSVAEVALILDCAEGTVKSRCSRARARLAGLLADVLDVGEPTATAPVPTDAGGNRPAGPDVGSLTRRGPPVADAPTVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHU8</accession>
    <name>A0A0Q8VHU8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Thioredoxin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_10175</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894708.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52775">
        <property type="protein sequence ID" value="KRC52775"/>
        <property type="gene ID" value="ASE19_10175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1617952at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013740">
        <property type="entry name" value="Redoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08534">
        <property type="entry name" value="Redoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360056" description="Thioredoxin domain-containing protein" evidence="4">
        <location>
            <begin position="21"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="domain" description="Thioredoxin" evidence="5">
        <location>
            <begin position="42"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="191" mass="20102" checksum="9C2DA5B1663830C5" modified="2016-01-20" version="1">MRRPARALAGLAGVLLLASACSDVGGTGDLEYVGGEGNVVTVATSDRQDPVDISGTTVQGEPLDVADLRGKVVVLNVWWSGCGPCRKEMPMLVDAEEELGKEEVAFVGINIRDLAPENAATFEKDRGVDYPSLYDPGSETLLALGEYAPPSMPATIFLDQQGRVAALINGPVPSRTTLTSVVEDILAENDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI29</accession>
    <name>A0A0Q8VI29_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03095</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892834.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56815">
        <property type="protein sequence ID" value="KRC56815"/>
        <property type="gene ID" value="ASE19_03095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1515911at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="165"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="194"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="235"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="264"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="290"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="18"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="164"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="32586" checksum="BCF5164211F92292" modified="2016-01-20" version="1">MTTLTRDKPVAAGRDAGTGLLLAIVSAATFGMSGALARPLLDAGWSAGGVVLLRIAVGALAVLPFGLAAMRGRWPLLGRALPTVVLYGILAVAGAQFCYFSAVQTMEVGPALLIEYTAPAAVVVWMWVAHGQRPGRLTVVGAVVAALGLLLVLDLFSGADFDVRGAAWALGAMVGAAAYFVISADDRSGLPPMALATGGLVVGGLFLGLIGLLGLMPVRTASTGVEYAGLEVAPWVAILALGLVTAALAYGTGIAASRRLGSRLASFVALSEVVLAVLWAWLLLGQLPGPVQFAGGALILLGVVGVKLGERSVTREEPVLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI94</accession>
    <name>A0A0Q8VI94_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03570</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56895">
        <property type="protein sequence ID" value="KRC56895"/>
        <property type="gene ID" value="ASE19_03570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1573721at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="125"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="278" mass="30138" checksum="0ED05CF2E9067B45" modified="2016-01-20" version="1">MFYMGATVYDFEGEHSTAAAAGGGAPGRGLMLLELPRWTVEYGASRLLDLAHAALPERDLGGGRPVLVLPGFSAHDKLTGRLRGHLAQRGFEVHGWGLGSNHGLTEKIVTGLPRRFAEVADRYDEPVSVVGWSFGGLLARWLAHEHPDRVRQVVCLGSPWRAEGERTRATGLFERSKVRHGIVDNAREIVDQLRGPVPVPLTAVWSRTDGIVPWRGCTVDEQTAGPGRAPAENVEVVSSHVGMVANPLVLSVVVDRLRQDPAAWEPFAWRHVLPGGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIB3</accession>
    <name>A0A0Q8VIB3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4129 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06600</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894499.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55097">
        <property type="protein sequence ID" value="KRC55097"/>
        <property type="gene ID" value="ASE19_06600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2003347at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025403">
        <property type="entry name" value="DUF4129"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13559">
        <property type="entry name" value="DUF4129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4129" evidence="2">
        <location>
            <begin position="139"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="213" mass="22652" checksum="AA5A44D5F2726F81" modified="2016-01-20" version="1">MSPLPAALLAGSLDPPLDPSGDEARRLLRRELADPKYYDANILERLQDWLERLIDDTVDGASASGPLSTAIAIVVVLALVAAIALLVSRARRTATAQRPGTAALTDEVITAGELRARAEAALASGDASTALVDAFRAVAVRQVERDRIEDVPQATAHELARALAAEFLAHAVAIHHGADLFDQTLYGERVATREQALELLALDDALAGRAVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VID2</accession>
    <name>A0A0Q8VID2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06685</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894515.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55113">
        <property type="protein sequence ID" value="KRC55113"/>
        <property type="gene ID" value="ASE19_06685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="154149at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="121"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="153" mass="16973" checksum="0D1CE384A7E176CE" modified="2016-01-20" version="1">MTADQLWISSVPRFGVVRTVIVDGSFAARFDDLNGDGREIELSFFRFDAGQWEETASLDDTRMPEIGGRPIVLASGWDAHAVGRGRPGQRWQLEWIDGTRLVQADPDGWWIAFAEHDLTHGRFPEPRAPARRLIPVSRAAGTPGGPPRATTPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VII4</accession>
    <name>A0A0Q8VII4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23905</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894004.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57370">
        <property type="protein sequence ID" value="KRC57370"/>
        <property type="gene ID" value="ASE19_23905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="626968at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044260">
        <property type="term" value="P:cellular macromolecule metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043412">
        <property type="term" value="P:macromolecule modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044238">
        <property type="term" value="P:primary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007848">
        <property type="entry name" value="Small_mtfrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05175">
        <property type="entry name" value="MTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MTS" evidence="1">
        <location>
            <begin position="144"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="500" mass="53347" checksum="9E70604C8FFF19B1" modified="2016-01-20" version="1">MLPVALAAPLREALLAADFTYDAVSELLGPEAHQALSRNETTPGVRRTTDGSPLATLARLFLLQTAVPAAEAERALPGLVDRLVNAGALVQSIGEVAARLDVRPYATEDGDLWVVSDLTPGLNGLPTSVTGDYVLGISPASSSLAQLTLRHDVGTALDLGTGCGVQALHLATHSDRVVATDVNQRALALARFNAALNDVGGLVDVRDGSFFAPVAGERFDLIATNPPFVISPATGERLVYRDSGLPGDQVVEHIVRTAPDHLNDGGWCQVLANWVIDRDQPWDERLAGWLPDDCDALVVQREVLDPASYVELWLKDAGHHPSTGGDPAGYAHRYDTWLSWLEEQRIGGIGFGWINLRRRADATPGGLARDLLEWPYDVEQPIAPAIAAWAEAGEAARTVGPDSHLVLREDVLQETTGPVGAEDPSTIVIRQQRGFRRARQVDTVTAAVVGASDGDLPLGPLVDAVGQLLERDPASLREVYLPELAELVAEGFLTVAPTAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIL2</accession>
    <name>A0A0Q8VIL2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08910</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895593.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54161">
        <property type="protein sequence ID" value="KRC54161"/>
        <property type="gene ID" value="ASE19_08910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1811496at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="134" mass="14691" checksum="2B9364B2A5417D56" modified="2016-01-20" version="1">MAYFTDTAEVDKYIGGVFRAAADHPESGPKMRAANIVLKVYYTDPACEMNVLMRPDGMSTSLGPIDEKADVVMMMKSDTGDKFWRGDYNLAVGLAKGEVKAKGPVNKILKLVPLTKPLFPMYRELVAEKDAANA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIM3</accession>
    <name>A0A0Q8VIM3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Choline transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_02895</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the BCCT transporter (TC 2.A.15) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893074.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57039">
        <property type="protein sequence ID" value="KRC57039"/>
        <property type="gene ID" value="ASE19_02895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1217683at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071705">
        <property type="term" value="P:nitrogen compound transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000060">
        <property type="entry name" value="BCCT_transptr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30047">
        <property type="entry name" value="PTHR30047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02028">
        <property type="entry name" value="BCCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00842">
        <property type="entry name" value="bcct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="51"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="89"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="130"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="184"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="229"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="270"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="303"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="359"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="389"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="437"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="481"/>
            <end position="500"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="512"/>
            <end position="535"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC57039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="579" mass="60710" checksum="8D06EB031A454FE6" modified="2016-01-20" version="1">MTQELSRTTAHRATELAESALATPAADVVPHPALDQAIETDEPPQGGLDPVVFGVAASISVAFVVWGLVGTSSLATASGHALDWVMTNTGWLFVLTSSGFVVFVIWLALSKYGAIPLGRDDEEPEFRTSSWIAMMFSAGMGIGLMFYGVSEPLSHFVTPPPGTGGDENTAAQTAMATTMFHWTLHPWAIYAVVGLAIAYGVYRKGRVQLISAAFAPLLGERASGGAGKVIDMFAIFATLFGSATSLGLGALQISSGLEIVGGIGPLGNGALVLIIAVLTVAFVLSAVSGVAKGIQWLSNINMVLAVLLAAFLFVVGPTVFILNLVPTSIGSYVQDLSMMAARTGAEGAATEDWLGTWTVFYWAWWLSWTPFVGMFIARISRGRTIRQFVSGVLLVPSVVSVIWFCILGGTAIDLQRTGTDIANAGGLEDQLFGTLDALPLATIAGVLVMTLVAIFFVSGADAASIVMGSLSERGTTQPRRTTVIFWGVATGAVAAVMLLAGGEDALTGLQTITIVAALPFVVVMVGLAVALVRDLRNDPMVVRRRYGEEAVEQAVIAGVTEHGDDFVLSIEPTEPEPTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJK8</accession>
    <name>A0A0Q8VJK8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PaaX domain-containing protein, C-domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_24020</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894025.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57391">
        <property type="protein sequence ID" value="KRC57391"/>
        <property type="gene ID" value="ASE19_24020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1210594at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012906">
        <property type="entry name" value="PaaX-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013225">
        <property type="entry name" value="PaaX_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07848">
        <property type="entry name" value="PaaX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08223">
        <property type="entry name" value="PaaX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PaaX" evidence="1">
        <location>
            <begin position="18"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="PaaX_C" evidence="2">
        <location>
            <begin position="214"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="254" mass="27243" checksum="B250D51B65D8E0C7" modified="2016-01-20" version="1">MCSVEGSGAVPDLAPLPARSVVLSLLLGSHPDRMSAAELVRAGEHFGIPTATTRVALTRAVAAGDLRRDPSAGSGQAAVYALGERHARRQRRQDEAVLDTETPWDGTWELAVVVVAGRPGPERAALRDRLAAYRMAELREGVWTRPANLRRSRAYADDAVLSTFTATPDEDPVALAAGLWDLRAWAAEGRLLLDAIASTREPAPRLAVAAQVVRHLADDPLLPAALLPRDWPAAAMRSAYANYQAELRALAIGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKP8</accession>
    <name>A0A0Q8VKP8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Castor_Poll_mid domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_04950</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Nucleus membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894264.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54817">
        <property type="protein sequence ID" value="KRC54817"/>
        <property type="gene ID" value="ASE19_04950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="189902at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044849">
        <property type="entry name" value="CASTOR/POLLUX/SYM8-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010420">
        <property type="entry name" value="CASTOR/POLLUX/SYM8_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31563">
        <property type="entry name" value="PTHR31563"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06241">
        <property type="entry name" value="Castor_Poll_mid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0407">Ion channel</keyword>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="52"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="107"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="domain" description="Castor_Poll_mid" evidence="6">
        <location>
            <begin position="306"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF06241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="657" mass="69761" checksum="5381016615AE1635" modified="2016-01-20" version="1">MGRTGQTLRRRTAQAIGQRTTGTGQAAGTGVGWAARLRYAFDNTMARGTPALVAWLFAVTVVLVLFFAVVNLVLGLRDDRLGFWDESFQALMHALDPGTVAGDTGSWWFLIAMLVLTIAGLFIVSALIGVIAAGIDARIADLRRGRSVVLESDHTVILGWSDSVFTVISELTIANESRRKPVIAILAPGDKVDIEDEIRSKVPDLRGTRVVVRSGSPSDVGDLALVSPASARSVVVLSPSPTGGPDPEFEPDREVIKTLLALRSADGGADGPRVVAQLRDPANLEVARLIGRDHPGRTSLLDIRETVAKLVVQTSRQSGAAAVYRELFDYDGDEIYFLEQHGLAGSTYADALLHYENVSVIGLSDGVDAILNPAPETVIGEQALVVVAEDDSVLARAPRSTATVAEDAFAAPHVEEAHATHAVLIGWNERAPVVITELDRYAAPGSTLTVLSSYGEPVAPATVNLAVTVVEASTTQRAVLDQHVSPEADQVLVLCYSDHLEAEAADATTLITLLHVRDILARSDSSTPVVSEMIDDRNRALAQVADIDDVVVSGEIVSLIVTQLSEDSRIEPVLADLLDSDGSEIYLRPAEWYVAPGREIAWATVVAAAARRGETAIGFASPGLAEPGSRIGVVVNPPKSESLVVEVGDRVVVLAEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKV3</accession>
    <name>A0A0Q8VKV3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05130</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894233.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54848">
        <property type="protein sequence ID" value="KRC54848"/>
        <property type="gene ID" value="ASE19_05130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1361074at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Abhydrolase_3" evidence="1">
        <location>
            <begin position="71"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="297" mass="31879" checksum="99B7698E12764FAD" modified="2016-01-20" version="1">MALHPQARRAIENAAGALPVTDPSYDIAAERARDRDEAVRQERLPVAEVRDVDAGGVPARLYLPAGYDAVVVHAHGGGFVLNDVEVHDAAVRRFALVAGAAVLSVDYRRPPEHPFPAAPDDVTAAAAWVATQPELAGLPLFVHGDSAGGNLALVAALRDPDRFAGVALVYPFLDPTAAFDSYRTAADGFDPSEAAWYWEQYASSPADLTDPDLAPLLSDRLGLLPPTLVTTAEHDPLRDEGEHLVLLLAEAGVEVVGTRYVGQVHGYWRHTSVFDAAEPTMRQVAGWMRMLVERGKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKW4</accession>
    <name>A0A0Q8VKW4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Single-stranded DNA-binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_05225</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894216.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54865">
        <property type="protein sequence ID" value="KRC54865"/>
        <property type="gene ID" value="ASE19_05225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1942216at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04496">
        <property type="entry name" value="SSB_OBF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000424">
        <property type="entry name" value="Primosome_PriB/ssb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011344">
        <property type="entry name" value="ssDNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00436">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002070">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50935">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR002070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="138" mass="14443" checksum="18F4CCDD875062CC" modified="2016-01-20" version="1">MANETIVTVHGWIAGVPMAREVSGVPVLNFRVGCTPSHFNRTTGAWVDSETQWYGVSAWRRLAAHGAESLRQGDAVIVHGRLNHRTYVNKAGVEVVATEIEAFSIGHDLNRGTASFVKAPAASGSAADPGHGGAVAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM28</accession>
    <name>A0A0Q8VM28_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">3-oxosteroid 1-dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_08470</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895519.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54087">
        <property type="protein sequence ID" value="KRC54087"/>
        <property type="gene ID" value="ASE19_08470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="153138at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033765">
        <property type="term" value="F:steroid dehydrogenase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008202">
        <property type="term" value="P:steroid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56425">
        <property type="entry name" value="SSF56425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_2" evidence="3">
        <location>
            <begin position="5"/>
            <end position="486"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="507" mass="52287" checksum="98379EF396386B43" modified="2016-01-20" version="1">MSAYDVIVVGSGGGALTGAALAAKAGLRTLVLERTPLIGGTSAYSGGACWLPGTDVQQRAGLPDSTEGARAYLAAVLVDPDQERVEALLAHAPKLVAQLEADPLMEFEWIPFAEYYDAPGRVPMGRSIQPKAISRDELDPRVDAILRPPVERDRAGRPGRSTLSGGQALIGRLAAMVLRDGGEIRTGHHVTGFARDGSGRVTTVLAQGPDGPVELTATRGVLVAAGGFEGSAERRTEHGTPGRAAWSMAPRGTNTGEVIDAAAAIGAATDWSGEGWFCPGLLQPDGSGTFTLGFRSGLMVDQSAQRYGNECLPYDRFGRVMAAAEDRTPSWYVFDSREGGRLPAIAMPEGDPAEHLAAGTWVQADTLEELAAATGLDATALTATVERFNGFAASGVDEDFGRGADEYDTFFASAGSPNKALVPLDQPPYLAAQFVLSDLGTKGGLVTDAAGRVLDGSGTPIAGLYAASNSTASVFGSAYPGPGAPLGAAMAFASLAVEDMVGSLSES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMA8</accession>
    <name>A0A0Q8VMA8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_01985</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892644.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56627">
        <property type="protein sequence ID" value="KRC56627"/>
        <property type="gene ID" value="ASE19_01985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="694191at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044249">
        <property type="term" value="P:cellular biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901576">
        <property type="term" value="P:organic substance biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="4">
        <location>
            <begin position="26"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="3">
        <location>
            <begin position="195"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="408" mass="44340" checksum="BFBAAF29C372B043" modified="2016-01-20" version="1">MTQHTTELSGRRVVVVNWRDLDHRQAGGAEIYAWQYARALRDGGAEVRFVTARDAGQSAHEVVDGIEVHRGGTRTGFIPFALGWLLRHRRDVDAVIDPSCGLPSFSPLVLRRRTPVLLVVHHVHQAQFTAHFPAPVAAFGRWLERVLMRRVYARRTTAAVSASTATEMRQQLGWTGDIRILANGADLPSYDGEQASAKDADRIAVLGRLVTHKRVDLVLEALAACRDRAALAGRDLRVDVIGQGPERDRLVARAAELGLADRVVLHGYLPAADKDRLLARAALHVCASDAEGWGQAVIDAAGWGVPTLARDVPGLRDSILEGESGWLVPDDADLGVVAARLADALESALATTTDPADRVRRADACRAWAARSDWSRMRSDARALTTEMLTGGTMPSGLHHPRDARVAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMR8</accession>
    <name>A0A0Q8VMR8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Deoxyribose-phosphate aldolase</fullName>
            <ecNumber evidence="2">4.1.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">2-deoxy-D-ribose 5-phosphate aldolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_06000</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-deoxy-D-ribose 5-phosphate = acetaldehyde + D-glyceraldehyde 3-phosphate</text>
            <dbReference type="Rhea" id="RHEA:12821"/>
            <dbReference type="ChEBI" id="CHEBI:15343"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="ChEBI" id="CHEBI:62877"/>
            <dbReference type="EC" id="4.1.2.4"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.2.4" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894080.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54994">
        <property type="protein sequence ID" value="KRC54994"/>
        <property type="gene ID" value="ASE19_06000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1227369at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004139">
        <property type="term" value="F:deoxyribose-phosphate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009264">
        <property type="term" value="P:deoxyribonucleotide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00959">
        <property type="entry name" value="DeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011343">
        <property type="entry name" value="DeoC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002915">
        <property type="entry name" value="DeoC/FbaB/LacD_aldolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10889">
        <property type="entry name" value="PTHR10889"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01791">
        <property type="entry name" value="DeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01133">
        <property type="entry name" value="DeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00126">
        <property type="entry name" value="deoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00032755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="327" mass="35010" checksum="E551C1C1F746267F" modified="2016-01-20" version="1">MPTTAPTDPVPGLAAYSEVTASEASLRRFLHGLPGVDQVGAEARAAGLGTRSIKTTAKAWALDLAIRMVDLTTLEGQDTPGKVRALANKALRPDPADPSCPSVAAVCVYGDLVGEVKEIVGDRVNVAAVATAFPSGRASMDIKLADTRDAVANGADEIDMVIDRGAFLAGHYLQVFEEIVATREACVRPDGTHAHLKVIFETGELQTYDNVRRASWLAMLAGTDFIKTSTGKVQPAATLPVTLVMLEAVRDFREATSVQIGVKPAGGIRTAKDAIKYLVMVNEIAGDDWLDPDWFRFGASTLLNDLLMQRTKMTTGRYSGPDYFTLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNT3</accession>
    <name>A0A0Q8VNT3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-alpha-hydroxysteroid dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23110</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892536.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58950">
        <property type="protein sequence ID" value="KRC58950"/>
        <property type="gene ID" value="ASE19_23110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1356861at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="256" mass="26598" checksum="B709F6EF3F272B3F" modified="2016-01-20" version="1">MGRLDNKVAIVTGGAQGQGAAIARAYVAEGAKVVIADVAKDEGQALADELCRTSGGANAHFAHHDVSDEASWTALVEDTNTRFGPVDVLANNAGILRFGDIERMPAAEVELVWRVNQLGVFLGMQAVARTMRKNGGGSIINASSVEGLAGMPSCTAYAATKWAIRGMTKCAAMELGPKGIRVNSVHPGMIDTPMTRVHGGDAAMEYGASKVPLRRVGLPEDIAPVYVFLASDESSYINGAEIAVDGGVTSTHAFGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPH7</accession>
    <name>A0A0Q8VPH7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04780</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894290.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54791">
        <property type="protein sequence ID" value="KRC54791"/>
        <property type="gene ID" value="ASE19_04780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="930905at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="525"/>
            <end position="559"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="637" mass="67976" checksum="ABDB6B17E35CBFBA" modified="2016-01-20" version="1">MSPEDLERQALERYAAGDLEGSVAAWEAVYDAELVAGRDEAAARAAALVALNLLCETGLMAPVRGWVARARRLVADAEPGPVHALLAVITTYERFLSGDPAAALAPAREAVELGERFGVDPARGLGRVAVARLALHAGDLDGGFALLDELAVDLGAGRFDPLTTGNVYCELICAAQWLGRHDRAREWTEVMDRWREGPAFGATHGRCRVHRAELLRISGPADVAEDEALAACDELRPWLRRELGWPLVELGTIRLRRGDLTGAEEAFREAHQRAWSPQPGLALLRLARGDLTGAAAMIRNEIAHPSDVPWKERPPFGDLRLVPLLAARSEIAAASGDRTEAEQAADELARIQATYPSQSLAAEVALAQARAALLADDPATAIGAATAAVATWTDLDAPYDAAGARVVLGAAHHALGEADLARLEWEAAADGFVRFGAPGRAAEVAALLGEQLTPAATAHRSASLVKEGDRWRIAHGGTEAWLPDLKGVHLLAALLASPGREVTALDLAGAGVVESGLPVLDEEARASYRRRLVEVEDDLAEAERDHDEARRELAERDREYLLAELSGALGLGGRHRVVGGTAERARTSVTRSLRYALARIAEAHPELGGHLDRAVRTGTCCSYVPDPIAPLAWEIVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ08</accession>
    <name>A0A0Q8VQ08_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Heat-inducible transcription repressor HrcA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hrcA</name>
        <name evidence="8" type="ORF">ASE19_23385</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the HrcA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893911.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57705">
        <property type="protein sequence ID" value="KRC57705"/>
        <property type="gene ID" value="ASE19_23385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1510750at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00081">
        <property type="entry name" value="HrcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001034">
        <property type="entry name" value="DeoR_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002571">
        <property type="entry name" value="HrcA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021153">
        <property type="entry name" value="HrcA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023120">
        <property type="entry name" value="WHTH_transcript_rep_HrcA_IDD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34824">
        <property type="entry name" value="PTHR34824"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01628">
        <property type="entry name" value="HrcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08220">
        <property type="entry name" value="HTH_DeoR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005485">
        <property type="entry name" value="HrcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00331">
        <property type="entry name" value="hrcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0678">Repressor</keyword>
    <keyword evidence="3 5" id="KW-0346">Stress response</keyword>
    <keyword evidence="4 5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 5" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH deoR-type" evidence="7">
        <location>
            <begin position="21"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="HrcA" evidence="6">
        <location>
            <begin position="103"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC57705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="340" mass="36550" checksum="F1A744C75F6CFE9A" modified="2016-01-20" version="1">MQEERRLAVLRAIVEDYVATEEPVGSKALVERHRLDVSPATIRNDMAALEDEGYLAQPHTSAGRVPTDKGYRLFVDRLSTVKPTTTAERRAIASFLDGAVDLDDVVHRSVRLLAQLTRQVAVVQYPTLSRSTVRHVEVVALTPTRLLLVLILSTGRVEQRHVELDEDLTEADLAALRSRINLAATGEVIGDAATALGDLVRAQDGAEPTSATQAVVESLVEAMSDHRSDERIVVGGTANLARFGDSFDTSIRPMLEALEEQVVLLKLLGEATTGGAVTVRIGAEGPYEELSSTSVVATGYGPDDALASLGIVGPTRMDYPGTMAAVRAVARYVSRILDES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQC6</accession>
    <name>A0A0Q8VQC6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pyridoxamine 5'-phosphate oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01060</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896697.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59644">
        <property type="protein sequence ID" value="KRC59644"/>
        <property type="gene ID" value="ASE19_01060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1885467at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024029">
        <property type="entry name" value="Pyridox_Oxase_FMN-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011576">
        <property type="entry name" value="Pyridox_Oxase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01243">
        <property type="entry name" value="Putative_PNPOx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04025">
        <property type="entry name" value="PPOX_FMN_DR2398"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative_PNPOx" evidence="1">
        <location>
            <begin position="34"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="209" mass="23221" checksum="A80D73D22E4AED8A" modified="2016-01-20" version="1">MTWTEITDDAALSALLGEPTAAARDKERTTLTDVDRAWLAATPFCVMGTADAEGRCDVSPKGDPAGQLVHVVDERTIAIAERPGNRRADGYRNILANPQVGLNFLIPGRGDTLRVNGRARLVSDAPFFDAMVVKGHRPLLAVVVDVETVFFHCAKAFLRSQLWKPETWTPEEKVPRRAVLAQQLERPDDSIEELDAYYGPSYEERLYVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQD1</accession>
    <name>A0A0Q8VQD1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SAM-dependent methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892639.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56621">
        <property type="protein sequence ID" value="KRC56621"/>
        <property type="gene ID" value="ASE19_01950"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="65"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="263" mass="29035" checksum="DF308CE6A391ACE4" modified="2016-01-20" version="1">MTAHRRDADEDESRSANGADWDRYADEYQATHGEFLGDVGFLWGPEGLTEAEAGILGEVRDRDVLEVGSGAGQCSRWIRAQGGRSFGLDLSHRQLQHSRRIDEMSGVVVPSVRGTATHLPFADASFDVVFSSFGALQFVAEIDLAVAETARVLRPGGRFAFSITHPTRWMFPDDPTEDGLTASQSYWDRTPYVEVDDETGATSYVEHHRTLGDWVALLAGRGFRLTTLLEPQWPADHDRLWGGWSRVRGVLTPGTAIFGADLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQJ1</accession>
    <name>A0A0Q8VQJ1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_01310</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896651.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59690">
        <property type="protein sequence ID" value="KRC59690"/>
        <property type="gene ID" value="ASE19_01310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="305000at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00088">
        <property type="entry name" value="HPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004105">
        <property type="entry name" value="CheA-like_dim"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037006">
        <property type="entry name" value="CheA-like_homodim_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036061">
        <property type="entry name" value="CheW-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002545">
        <property type="entry name" value="CheW-lke_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036641">
        <property type="entry name" value="HPT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008207">
        <property type="entry name" value="Sig_transdc_His_kin_Hpt_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01584">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02895">
        <property type="entry name" value="H-kinase_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01627">
        <property type="entry name" value="Hpt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00260">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01231">
        <property type="entry name" value="H-kinase_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00073">
        <property type="entry name" value="HPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47226">
        <property type="entry name" value="SSF47226"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50341">
        <property type="entry name" value="SSF50341"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50851">
        <property type="entry name" value="CHEW"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50894">
        <property type="entry name" value="HPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HPt" evidence="7">
        <location>
            <begin position="1"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="5">
        <location>
            <begin position="216"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="domain" description="CheW-like" evidence="6">
        <location>
            <begin position="458"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="domain" description="CheW-like" evidence="6">
        <location>
            <begin position="613"/>
            <end position="748"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="151"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="4">
        <location>
            <begin position="179"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="modified residue" description="Phosphohistidine" evidence="3">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="750" mass="79605" checksum="776BD5F93B884DE3" modified="2016-01-20" version="1">MDDDAEIIAEFLVESHENLDQLDRDLVELEQQPDSRERLSSIFRTIHTIKGTSGFLAFNRLEQLTHVGETLLSRLRDGEAQMTPAIAEALLSMVDTVRALLSVIEHTSADTDPSVDVVPVVAVIEDLLAGREPAASTPALVASEVGGATEEPVVSPAVSSVAPPDPEPVAEPVAEPVAEAEPAPEPTPEPTPEPAPEWDGVERRARVDSSVRVDVDLLDDLVDLVGELVLTRNQLLQRSLASPDVELVRASQRLDLVASELQESVMKTRMQPIGQVWSKLPRVVRDLSHQLGREVELVMEGHETELDRSLLEAVKDPLTHLVRNSLDHGIEPPDVRAAAGKPTKGTLSLRAYHESGQVVVEIADDGKGIDPAKISAVALERGVVTREQLSRMDAREVLGLIFRPGFSTAAAVSNISGRGVGMDVVRTNIERIGGSVDVTSEPGRGTTTRVRIPLTLAIIPALVVGEGPERYAIPQANLVELVRIEGDDLQRQVEDLAGAPVLRLRGKLLPLVSLSGVLTGVHPDAGEALTVVVLQSDDVRFGLCVSTVHDTQEIVVKPIGRQLKGLAMYAGATIMGDGRVALILDVAGIAVTAGVGATQAETGDPRATATDDRTALLVLEVADGRRAALPLAAVARLEEFGRERIERSGSAEVVQYRDGILPLVRLATAIGLPDTSDRSDQVSVVVHETGDAAGGAVGIVIDRVLDVVEVAVTASQVGRRAGVTGSAVVQDRVTDLVDLEAVVARSGVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQK4</accession>
    <name>A0A0Q8VQK4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01820</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896558.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59781">
        <property type="protein sequence ID" value="KRC59781"/>
        <property type="gene ID" value="ASE19_01820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1119700at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="37"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="302" mass="32243" checksum="8EEDB6C7F735B9D3" modified="2016-01-20" version="1">MADVGSWVDVDWSAHVHDVIVGGRVVRYVDYGEGSPLLLVHGMAGSWQTWLLNLEALGAEHRVIAVDLPGFGGSEPLPAGAGFSGYLTTLRGLLDELGIDRAAVFGHSLGGLVALSFAAARPERTACLVLVSAGGVALSAARLRVIQAAFWLFRLVLLTPGVRRALVRGNGGRFVLSPAVHHWRALPVALVDQMMPRAIGAGFMEAVRLGSEQLRELAPERVDVPVLLAWGRQDRILPLAAARDLVARLHQAQLVVLDDVGHCAMFEAADEFDALALDFLENRGWTTHNGSTAGRYGDGTVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQK7</accession>
    <name>A0A0Q8VQK7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">POTRA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_02355</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892707.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56689">
        <property type="protein sequence ID" value="KRC56689"/>
        <property type="gene ID" value="ASE19_02355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1270665at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005548">
        <property type="entry name" value="Cell_div_FtsQ/DivIB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034746">
        <property type="entry name" value="POTRA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013685">
        <property type="entry name" value="POTRA_FtsQ_type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03799">
        <property type="entry name" value="FtsQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08478">
        <property type="entry name" value="POTRA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51779">
        <property type="entry name" value="POTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2" id="KW-0132">Cell division</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="domain" description="POTRA" evidence="8">
        <location>
            <begin position="58"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="248" mass="27187" checksum="35FA52AE8877481C" modified="2016-01-20" version="1">MARGRGKAPESGLDRARKAFARRQRARRWLTWRKVLAVVLAIALVGLGVYALYFSSWLRTEGTEVVGNDLVTDKQILAAAAVPTGGPLIDVDLRAIEKRVRSIGAVRQVDVSRKWPHEVRIEVVERKPVAVLNFGEKVYVLDAEGEPFQAPPRARDGLPRISVAGSSDKAALREGAAVVTALDGDVSSMVEYVEVRTVDDIQLHLRDDRLVKWGSSDQSDDKAAVLLQLLKRKASVYDVSVPGSPTTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQL8</accession>
    <name>A0A0Q8VQL8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Amino acid permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_01415</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896631.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59710">
        <property type="protein sequence ID" value="KRC59710"/>
        <property type="gene ID" value="ASE19_01415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="527053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="106"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="133"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="158"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="191"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="232"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="292"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="334"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="368"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="403"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="434"/>
            <end position="455"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC59710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="486" mass="50911" checksum="A1F3DE3E36A7259C" modified="2016-01-20" version="1">MSDTVNTTLRKNALGVGAIVFLVLAAVAPLTGMVVVASLAIAFGNGGGAPFSFLAVAAILLLFAIGYGKMSSQMVNAGGFYAFVVKGLGRPAGLAAGYIATLGYNFFVVGTIGTSGFFMMVLIDFLFGFSMNWFIWGGLSMVVAYLMAVRGIDFSSKVLGVSLVLESSILVIFDVAVLFKHGYDFSAFSGDAITSGSLSIGLLLAATGFLGFEATSLFSEEAKNPLKTIPRATYLAITIIGLLLAVTTWAVVSATGVEQAQQSSIDHLEAGDLVFSLGAEYLGEFMMKTMMVLLLVSLFAAMLAFHNSATRYLFSLGRARVLPQALSRTSSSGAPVLAGTLQAGFALLVAAVFRIIDLDPILQVVPAMLGFGTLAIVVLQALAALSIVVHFRRSGDSRIGSTLVAPAIGFVGLSFIVVMAVTHFDVVAGSTEKLITSLPWLLVLALLVGVAQAFYLKTSRPEIYDGLNADLERFDAEADDAATTAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQU3</accession>
    <name>A0A0Q8VQU3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03005</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892820.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56801">
        <property type="protein sequence ID" value="KRC56801"/>
        <property type="gene ID" value="ASE19_03005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="630753at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360314" evidence="1">
        <location>
            <begin position="34"/>
            <end position="583"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="583" mass="63115" checksum="F5784D1A046C238F" modified="2016-01-20" version="1">MTHRLDRRTLLSSSAAVGAGAALTATGLAPAFAATPGKEAVVLGGGMAGLTAAHELVERGFSVTVFEPSAWGGKARSIPFGGTGTGGRADLPGEHGFRFFPGFYHHVPDTMRRIPFGSGTVGDNLVAATGGKFLRGGDHADAFVFGIGPDPVQILTVDGLRRFLLDNLGGHAVPPHELVYFVERLLVFLTSCDERRLGQWEKVSWWDFVGAGKRSEPYRKILAAGLTRNLVAAKETIASTRTIGNMGEAFVYNIMGRGNDGALDRVLDLPTNEAWIDPWMTYLRGRGVRFVSGQRLVRYETSAGRITGAVLADVNGTTSRVEADWFVSAMPVEKAVPTLTPDVLALDPGLKGLSALRTDWMVGIQFFLRDHVDITKGHITFIDSPWSLTALTQGQFWADRTIPRDYGDGEVVDILSVDISNWDAPGILHGKTAKECTREEIAAEVLAQIKDHHTVGDLMPDGIVHSWFLDPGVQWDAAAGRNTNETPLLVNTVDSWGSRPTARTRIPNLLMSGDFVQTDIDLATMEGANESARHAVNAILDESRSTAARVKTYKLYDPPEFTALKAADKLLYKLGLRNALDLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQV5</accession>
    <name>A0A0Q8VQV5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase</fullName>
            <ecNumber evidence="3">4.2.1.17</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01635</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.17" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896591.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59748">
        <property type="protein sequence ID" value="KRC59748"/>
        <property type="gene ID" value="ASE19_01635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004300">
        <property type="term" value="F:enoyl-CoA hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="255" mass="26619" checksum="1C4BB0C6386EF34C" modified="2016-01-20" version="1">MSDAVLLEVDDGIATITLNRPEVRNAIDLPTALAIAEALDEVDERGDVAVAILTGAGTTFCAGMDLKAFAATKERPIHERRGAFGIVRRPCDKPLIAAIEGNALGGGLEIALACDLVVATESSRLGLPEVKRGLVAAAGGVLRLPRRIPQAVALELIMTGEPLTAGQAKEWGLVNRVAPDGEALVVARELAAAINANAPLAVRAAKRIVVESADWTLDEGFDRQAAHTDPVRSSADAAEGARAFVEKRTPVWSGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQW5</accession>
    <name>A0A0Q8VQW5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01845</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896553.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59786">
        <property type="protein sequence ID" value="KRC59786"/>
        <property type="gene ID" value="ASE19_01845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2122399at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="144"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="203"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="234" mass="26313" checksum="F87E2571B57DBEC8" modified="2016-01-20" version="1">MYDATDVFEAVDDNVVLFLVLGAGALACNWYYFFACARLARRDRCAPMALWATTVFIGHDASYLLNYDDWFVTYDHWFPKLFWVGLIVTNLFEMVFFVQTVRYGRRELAPRMTQKQWIAYCVGALVTGVVFWSVTRTYLDDPLYLMTFLVTFGMCAPATFAFMVRRGDRTGVGADQLWAYLGIGVFYIALTTVVLGGAFRDPVWLLGSVVCVALSVGLIALYRRLPAPGSVGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQX6</accession>
    <name>A0A0Q8VQX6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00545</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896902.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59802">
        <property type="protein sequence ID" value="KRC59802"/>
        <property type="gene ID" value="ASE19_00545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1196738at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="41"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="309" mass="33362" checksum="0FD9F9F94742F94B" modified="2016-01-20" version="1">MSVRSAGHEWPEVIISDELVAPICSGIEICYQTFGDPDDEPLLLVMGLGGPMTWWDSELCAQLAASGFYVIRYDNRDTGRSTRGTERVRRSQLLRAFLGTPTRAPYSIADLARDAFGLLDHLGISAAHVAGISMGGMIAQTMALTAPERVLSLASIMSTTGRRSVGGQHPALLPTLIATRGPGREDYVRGSLAVWRTIGSPRFPQPDDKLRKRAGDTFDRGVSRAGVLRQMMAVLTQPDRTEALRHLVVPTLVMHGLADRMVHVSGGRATAAAVPGARVVMIEGWGHDLPAPLFTTFTRAIRANADRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQX9</accession>
    <name>A0A0Q8VQX9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00670</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896898.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59806">
        <property type="protein sequence ID" value="KRC59806"/>
        <property type="gene ID" value="ASE19_00670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1666270at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="81"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="22946" checksum="7B0F4437648EC517" modified="2016-01-20" version="1">MSKHAKPVPKHRGAPKHAHLAQAPRKAARNVVVMSSVAVAVTGVSVAAGVLGNDVAAPTASADVDALTAASQADPTVVADRREPVLSRSDRRPEADPAKTASLEESTGSAITAERKLSESDPRDIARALLGEFGFSSDQFGCLDSLWTRESNWRVNADNPSSSAYGIPQALPGSKMSSVGSDWATNPATQIRWGLGYIQARYGSPCGAWGHSESHGWY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VT95</accession>
    <name>A0A0Q8VT95_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cupin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23190</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892523.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58963">
        <property type="protein sequence ID" value="KRC58963"/>
        <property type="gene ID" value="ASE19_23190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1928636at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_2" evidence="1">
        <location>
            <begin position="62"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="165" mass="18452" checksum="EE8044E48B7476FC" modified="2016-01-20" version="1">MSYPPPLYDGDGEVSAWARPGDALPDLVYPNGNRVHHLARGETTGGLFGLYRWEFSEAVSGPGLHFHRSMAESFYVLDGEIRIHDGVEWVRARSGDFVHVPPGGLHGFRNESGARASMLLHFSPGAPREPYFDGLDRLARGEQWTPEEYDAFMAEHDNVWVEDPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWH1</accession>
    <name>A0A0Q8VWH1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Enoyl-CoA hydratase 2</fullName>
            <ecNumber evidence="1">4.2.1.119</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Enoyl-CoA hydratase 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_23175</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a (3R)-3-hydroxyacyl-CoA = a (2E)-enoyl-CoA + H2O</text>
            <dbReference type="Rhea" id="RHEA:26526"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57319"/>
            <dbReference type="ChEBI" id="CHEBI:58856"/>
            <dbReference type="EC" id="4.2.1.119"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.119" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892525.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58961">
        <property type="protein sequence ID" value="KRC58961"/>
        <property type="gene ID" value="ASE19_23175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1924578at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002539">
        <property type="entry name" value="MaoC-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01575">
        <property type="entry name" value="MaoC_dehydratas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC-like" evidence="5">
        <location>
            <begin position="15"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00029334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00030115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC58961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="129" mass="13727" checksum="6DFA028F3E12BE8B" modified="2016-01-20" version="1">MSSALKVGDRLPDWSLPITPTLVVSTAIATRDFQDVHHDRDIAQAAGSKDIFVNILTSTALCERYVTDWAGPDVQIRGIAIRLGAPAYPYDTFTFTGEVTEVEDGVATIKVVGAVSLGDHVIGTVKVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VY11</accession>
    <name>A0A0Q8VY11_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">tRNA threonylcarbamoyladenosine biosynthesis protein TsaB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896819.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59521">
        <property type="protein sequence ID" value="KRC59521"/>
        <property type="gene ID" value="ASE19_00330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1826274at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000905">
        <property type="entry name" value="Gcp-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022496">
        <property type="entry name" value="T6A_TsaB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735">
        <property type="entry name" value="PTHR11735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735:SF11">
        <property type="entry name" value="PTHR11735:SF11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00814">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03725">
        <property type="entry name" value="T6A_YeaZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TsaD" evidence="1">
        <location>
            <begin position="30"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="219" mass="22439" checksum="423496837CD6B8BF" modified="2016-01-20" version="1">MLLAFDTASPTVTVALHDGSDVVASATATTAMKHGEQLAPLIEQVLASAGARPADLTAIAVGAGPGPFTGLRVGLVTARTMGHVLGIAVHGVCSLDALAIEAVETGAVDGDFLVATDARRKEVYLASYDGRGVRTSEPVVDRPAALATDRPVVGEGAALYPDAFPAGREPLRPDAAWLARAVAAERVALLAPEPLYLRRPDAEIPQAPKAVLSDVAPTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYE4</accession>
    <name>A0A0Q8VYE4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_00135</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896852.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59488">
        <property type="protein sequence ID" value="KRC59488"/>
        <property type="gene ID" value="ASE19_00135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="618655at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="16"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="252"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC59488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="484" mass="50954" checksum="6CB14DB8589A35B1" modified="2016-01-20" version="1">MTLDRDALFIGGTWARPATDAVLEVVSPHSEQVVARVPEGSAADIDAAVAAARKAFDEGPWPRMSPQERIDVIQNLSGLYAARLDEMATIISTEMGSPISFSSLAQAPAPWMQIEAFLAIAREFPWEATRPGSLGADVVVRHEPVGVVAAIPPWNVPQFTILSKVVPALLTGCTVVVKPAPETPLDAYLLAELLVEAGVPEGVVSIVAGGREVGEHLVRHPGVDKVAFTGSTAAGRKIGAICGEQLKRVSLELGGKSAAIILDDADEAAAIEGLKFLGVMNSGQACVAQTRVLVSRERHDAFAAALASAIGAMKVGDPLDPATEIGPMVAQRQQERVASYIRIGQDEGAQLLTGGEGRPDGLDTGWYVRPTVFAGVDNRMRIAQEEIFGPVLSVIPYVDVADAVRIANDSEYGLAGTVWTADPEAGLEVARGVRTGTYGINTYTMDFAAPFGGFKASGLGREFGPEGLGQYTELKSVYLSAPAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYI4</accession>
    <name>A0A0Q8VYI4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Aminopeptidase N</fullName>
            <ecNumber evidence="4">3.4.11.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_00410</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Release of an N-terminal amino acid, Xaa-|-Yaa- from a peptide, amide or arylamide. Xaa is preferably Ala, but may be most amino acids including Pro (slow action). When a terminal hydrophobic residue is followed by a prolyl residue, the two may be released as an intact Xaa-Pro dipeptide.</text>
            <dbReference type="EC" id="3.4.11.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.2" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896804.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59536">
        <property type="protein sequence ID" value="KRC59536"/>
        <property type="gene ID" value="ASE19_00410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="771837at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045357">
        <property type="entry name" value="Aminopeptidase_N-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042097">
        <property type="entry name" value="Aminopeptidase_N-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001930">
        <property type="entry name" value="Peptidase_M1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014782">
        <property type="entry name" value="Peptidase_M1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027268">
        <property type="entry name" value="Peptidase_M4/M1_CTD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01433">
        <property type="entry name" value="Peptidase_M1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17900">
        <property type="entry name" value="Peptidase_M1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00756">
        <property type="entry name" value="ALADIPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63737">
        <property type="entry name" value="SSF63737"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M1_N" evidence="12">
        <location>
            <begin position="22"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M1" evidence="11">
        <location>
            <begin position="225"/>
            <end position="421"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012564"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00015611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF17900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC59536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="432" mass="47869" checksum="09331C985AC39E35" modified="2016-01-20" version="1">MHRLPTADPYLPGHGDPSYSVRHYDLDLAYALEGNRLSGTATLDVVTLEETARLVLDLAHLRASKVRVDGAGLKKWSARSDRLVLQLDRAVPAGTELRLAIAYGGVPQPVIDRHHGDAGWEELADGVIVAAQPHGAPTWFPCNDRPDDKATYRISIGAPAGYTVVANGELVDHRRRASVEEWTYVMDRPMATYLATVQIGRYTSTPHGPTVTTIAPSDADLDGSFDQQGEMLAFFERVFGRYRFASYAAVITDDDLEIPLESQGLSTFGRNFCSAEWSHVRLIAHELAHQWFGNAVTLRRWQDIWLHEGFACYSEWLWSEESGGPRSCDGWARHHHERLAEADQDLVLSDPGPELMFDDRVYKRGALALHTLRVAVGDDTFFGLLTAWVDVFDGGSVTTDDFLAFASERTGTDVAGLLGPWLHETQLPAFPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZ44</accession>
    <name>A0A0Q8VZ44_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_01705</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896579.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59760">
        <property type="protein sequence ID" value="KRC59760"/>
        <property type="gene ID" value="ASE19_01705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360513" evidence="2">
        <location>
            <begin position="24"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="3">
        <location>
            <begin position="42"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="4">
        <location>
            <begin position="128"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="351"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="376"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="387"/>
            <end position="414"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="428" mass="44800" checksum="9FA98706E40D11C4" modified="2016-01-20" version="1">MTKRTVRAALGCLALMVGLSGCSWTGINSVSLPFTKGRGDDSLTITVQLENAANLVPNSEVKYDEVTIGSVRKIELEDWVATLTIGLEEGSHVPADVVASVAQKSLLGAEYLELKDPATRDGQGATDVLATGDVIALDRTRRYPETEEVLTAASMLLNGGGLPQIQTIAKELNAALGGRTDDIKSFMRTVSTFTDRLDGQRDNIASVLTQMNRLSKAVTGDKGKVTRILQEIPEGLQVLEDERAELVRALRAVAGFGTTAHEVIGDTKVAFQENLAHLRRITKTLADHGDKLAKSVDGVTYPFNMRDAGNVIYGDYMNLITEIEVSAQDLTNHWLGGTPLDGLLPALLGGSPTGPAADASDPLAEDPLDGLLGTVEGVLPDLTGSASSGKDARSSGSSGTSGNGTPTPSPGGKDVLSSLLNGLLGGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZ58</accession>
    <name>A0A0Q8VZ58_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_01795</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896563.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59776">
        <property type="protein sequence ID" value="KRC59776"/>
        <property type="gene ID" value="ASE19_01795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="4">
        <location>
            <begin position="11"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="3">
        <location>
            <begin position="207"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="339" mass="34395" checksum="DFC386C40A0D4049" modified="2016-01-20" version="1">MLAPRVGYDADHDDFAQSVRRFLADHVVGQLDQWRADGGFDRGLLAAAGEQGFLGTTVPEELGGAGLDDPRFAAVLVEELAATGATGLALVVARHVGVVLPALVAAGSAEVAGLAAGELIGCVAVVSAEGRAAGVPGAGIADVFVLVDAARPDRCVVVRRDELAVVPSRLLGGTDAAAADVVVPASVLAGDGYDAPGLLAALDLWGAVVSVGAARAAFDLTVDYVQDRAVFGRKLATFENTRFRLAEVGAELTAARGMVDAALAAVVGGTLTPALAAAVRIVAANVHDRAVDQGMQLHGGYGYMREYPIAHAFGDARFVRVASAATSEPRAVLASALGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W1U5</accession>
    <name>A0A0Q8W1U5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Protein kinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896654.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59687">
        <property type="protein sequence ID" value="KRC59687"/>
        <property type="gene ID" value="ASE19_01290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="678616at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Protein kinase" evidence="1">
        <location>
            <begin position="21"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="680" mass="71575" checksum="0E5B56109E583132" modified="2016-01-20" version="1">MDIAPYAAVTGPPTDRTLYGVRRPGSFRKGGIGVVYEAELRRDVADHPAGTRVGLKLLSGVDEQRFRKILERSERLRAARHPHLAVHVDSFVGPPLSAHGVAEEDADLFYSAHVWVEGTSLRDHEPAAPDAVLGWLGQVAAALDHLHTLPGGGFAHRDVHAGNVIVRPDGTAVLMDFDTILWGELSDTRLTSLTSPRAIDAVGLAGAQRADRSMLAVMALTALAGGEAADAAGSLGELQAAAGEGVAAGARGTALVAHLRHAVEEPPATAAEVVEVAADLLSGRRRPPRRPVRLPRAARSPRVVAVAGLLALVLGMSVTAWSLGRRDTGTPPTSAPRSTPTAPVAPAFACWDGSRQRTLKKCGDPDGVAGLNWAFPTLDLTSASCSPQGEDYYASCSFADAGVAPVPGIPDAGAPGPGGGLTFADLRSYACAYECRDWVVDGELTGRIQVERPGASNTWDTSSGATDLVRVTVAYAGYDVLLDFFVTDESAIDVLLERLHPRPASQMRGVAVTDGSATACWNGTSAASPDRCPVVGGRAGLLWAFPGLRGRLARCEDHSGDVEEMWICDYSDLGLTDVPGAGAWPHQLYVRFTSGTPGAQQVGQAPTATRDVREWRIGEETVGTFVRTTDQLSSGSPLIHGVEAGYAAAPFWFDVAGRSQAEVDQVVELLHPRAILTDRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM52</accession>
    <name>A0A0Q8UM52_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19605</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895862.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46086">
        <property type="protein sequence ID" value="KRC46086"/>
        <property type="gene ID" value="ASE19_19605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1457558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="312" mass="33877" checksum="20C17DE90AA459C5" modified="2016-01-20" version="1">MRVLPTRIPHGRTARRVEWAHLPPRVRQAVEGHLGSPVTEAASQGAGFTPGFASVLTCADGTRHFVKAAAVKAQRLFAESYREEARKLRGIPSGVPAPRLLWTDEVEDWFLLSTEYVEGRAPARPWTPADLALASDMAVRIADLLTPAPGVGLGTAVDEFASWPGLWAVIDHPRAAELGALASGYADVVAGETLVHTDIRDDNILVLDEERAVLCDWNWPVVGAPWLDSLFLLIGPRGDGLDVDAHIDAHPLLSSVPAEHVDVVLALILGYFTVSAAEPVPPTSPHIRAAQAWQRDVIDQWLAERRGWSLPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMA9</accession>
    <name>A0A0Q8UMA9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19920</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46139">
        <property type="protein sequence ID" value="KRC46139"/>
        <property type="gene ID" value="ASE19_19920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1389691at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="117"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="258" mass="27272" checksum="D1C876F81EF5E909" modified="2016-01-20" version="1">MLAASAAWAFVPAGAPRAEADEYLLVRYPDWTERPVQVVHTLAGRPIEQVVDEVLERARPMVDPAVPASADVAWWVRLDAPVGLEQALVARGAVLDETVDVLACSLGDEDDLPAPDVELRWSDDLAVFADAVRLSAEVFGGTATDRATLEATFPGEQAKVRTGGGGAVVAYDEHGRAVGSGGLTMAGADARLWGGVVVPEARGRGIYRAVLAARLAYARQHGADLAIVKGRVQTSGPILRRAGFAGFGQERSWLLPIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMT4</accession>
    <name>A0A0Q8UMT4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20980</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896087.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46316">
        <property type="protein sequence ID" value="KRC46316"/>
        <property type="gene ID" value="ASE19_20980"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024422">
        <property type="entry name" value="Protein_unknown_function_OB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12869">
        <property type="entry name" value="tRNA_anti-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="58"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="84"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="216" mass="23251" checksum="8211A9DD24A02C45" modified="2016-01-20" version="1">MTQIPPPPPGPQQPGSYGDAKAQAKAAKAYAKAQRPWYKKKRWIGLIVLVVIIAISAASGGGSDDKGDKDAEDKTPTSSESPTETAKPDDKKSDEPKAGETKAEEPEPETKKFDVKTQAVAMVSEFSENELAADAKYKDKVIKVTGIISKIDTEIFDDKDYVLKLKGDAYDLLTVDCFDISNDELSKLAPGQKVSMIGDFKDGGDLGVELNHCSLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN18</accession>
    <name>A0A0Q8UN18_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21445</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46398">
        <property type="protein sequence ID" value="KRC46398"/>
        <property type="gene ID" value="ASE19_21445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1923466at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="212" mass="21533" checksum="BE89DB0EF2AD017C" modified="2016-01-20" version="1">MWIDVSTVVRALGLAALLTIVPVGIGVTVAGDRTPDREKASYDALDLADFDTTTAVVQRAPFCDLVPDEAVKAALGTEAKVTAYGNGEKSGALPGGDVAHEYGCIYAGEDTEARAWVFAPPVAAARASALVEAATAGKGCTAPAGAPAYGTPSTALVCITGDQRTISYRGLFGDAWLACTLTVGVAADQADQVSRAGRWCVAVAEAASVQPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN40</accession>
    <name>A0A0Q8UN40_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Adenosylhomocysteinase</fullName>
            <ecNumber evidence="4">3.3.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">S-adenosyl-L-homocysteine hydrolase</fullName>
            <shortName evidence="4">AdoHcyase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ahcY</name>
        <name evidence="9" type="ORF">ASE19_21400</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4 6">
            <text>H2O + S-adenosyl-L-homocysteine = adenosine + L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:21708"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:58199"/>
            <dbReference type="EC" id="3.3.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4 6">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
        <text evidence="4 6">Binds 1 NAD(+) per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 6">Amino-acid biosynthesis; L-homocysteine biosynthesis; L-homocysteine from S-adenosyl-L-homocysteine: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 7">Belongs to the adenosylhomocysteinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.3.1.1" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896160.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46389">
        <property type="protein sequence ID" value="KRC46389"/>
        <property type="gene ID" value="ASE19_21400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="522981at2"/>
    <dbReference type="UniPathway" id="UPA00314">
        <property type="reaction ID" value="UER00076"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004013">
        <property type="term" value="F:adenosylhomocysteinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00401">
        <property type="entry name" value="SAHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00563">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042172">
        <property type="entry name" value="Adenosylhomocyst_ase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000043">
        <property type="entry name" value="Adenosylhomocysteinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015878">
        <property type="entry name" value="Ado_hCys_hydrolase_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020082">
        <property type="entry name" value="S-Ado-L-homoCys_hydrolase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23420">
        <property type="entry name" value="PTHR23420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05221">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00670">
        <property type="entry name" value="AdoHcyase_NAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001109">
        <property type="entry name" value="Ad_hcy_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00996">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00997">
        <property type="entry name" value="AdoHcyase_NAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00936">
        <property type="entry name" value="ahcY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00739">
        <property type="entry name" value="ADOHCYASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 4 6" id="KW-0520">NAD</keyword>
    <keyword evidence="2 4 6" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AdoHcyase_NAD" evidence="8">
        <location>
            <begin position="238"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="204"/>
            <end position="206"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="233"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="238"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="267"/>
            <end position="272"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="290"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="325"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="346"/>
            <end position="348"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="394"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001109-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="480" mass="52437" checksum="13A7BF96BC4D452A" modified="2016-01-20" version="1">MDYKVADLSLADFGRKEIELAEHEMPGLMAMRARYGADQPLKGARIAGSLHMTIQTAVLIETLVALGADVRWATCNIFSTQDHAAAAVVVGKDGTVDAPAGTPVFAWKGETLAEYWDEAEKVFDFTDADGNRIGPNMLLDDGGDITMLVHLGLEYEKAGVVPGQDSTDNEEFKEVLRVLARSVANDPTRWTTIAAGIKGVTEETTTGVHRLYERFKEGSLLFPAINVNDSVTKSKFDNKYGCRHSLIDGINRATDVMIGGKVAVVCGYGDVGKGSAESLRGQGARVIVTEIDPICALQAAMDGYEVKRLDSVVEYADIFVTTTGNFDIINVEHFQKMKNQAIVGNIGHFDNEIDMAGLAKIPGIVKDEIKPQVHQWIFPDGKKVIVLSEGRLLNLGNATGHPSFVMSNSFTNQVLAQIEIFTKTDEYEVGVYVLPKHLDEEVARLHLDALGVELTELTKEQAAYIGVDVAGPYKPEHYRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNF3</accession>
    <name>A0A0Q8UNF3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Sulfur carrier protein FdhD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">fdhD</name>
        <name evidence="4" type="ORF">ASE19_22175</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FdhD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896290.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46522">
        <property type="protein sequence ID" value="KRC46522"/>
        <property type="gene ID" value="ASE19_22175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="948173at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097163">
        <property type="term" value="F:sulfur carrier activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016783">
        <property type="term" value="F:sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00187">
        <property type="entry name" value="FdhD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003786">
        <property type="entry name" value="FdhD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30592">
        <property type="entry name" value="PTHR30592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02634">
        <property type="entry name" value="FdhD-NarQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015626">
        <property type="entry name" value="FdhD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00129">
        <property type="entry name" value="fdhD_narQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Cysteine persulfide intermediate" evidence="3">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="275" mass="29162" checksum="17C865A31AC99E9B" modified="2016-01-20" version="1">MGRVTARRKVLRIRDGVVDQRPDTLAAEEPMEIRVAGKALTITMRTPGDDFDLAVGFLVSEGVVRRASDVLSARYCAGATDDGTNTYNVVDVGLDPSLPPLDLSLERNFYTTSSCGLCGKASLDAVRTASTWSVADDPLRLTPELLASLPGRLRDSQRVFDKTGGLHAAALFSADGELLVVREDVGRHNAVDKVIGHAVRGGLLPLRETVLMVSGRASFELVQKAVMAGIPALAAVSAPSSLAVDLAEENGMTLVGFLRGTSMNVYSAPERVVAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8USQ8</accession>
    <name>A0A0Q8USQ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_22055</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the autoinducer-2 exporter (AI-2E) (TC 2.A.86) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46649">
        <property type="protein sequence ID" value="KRC46649"/>
        <property type="gene ID" value="ASE19_22055"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002549">
        <property type="entry name" value="AI-2E-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21716">
        <property type="entry name" value="PTHR21716"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01594">
        <property type="entry name" value="AI-2E_transport"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="36"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="70"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="158"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="213"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="241"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="312"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="352"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="376" mass="39048" checksum="833AB63191E25D53" modified="2016-01-20" version="1">MRRAEVPYGLDLAAGWAWRLLLIAGAGYLLMWLVGYFAVVTVPVAVALLISALAAPFVNLLTRIGVPRGLSALLVVILGFAVVGALLTFAGNQVADGAKDLADSAVQGLQEIRDWLRDGPLHASDSQINDWIKSAQDVITERSQDGEVVSQVTEVGSALGHVVAGFFIALFSTYFFLADGGRIWSWIVRLAPRVARERVDSSGRVAWVSLVQFVRATVVVALVDATGIAVGAAILDVPFVLAIGVLVFLGAFVPMIGATIAGSVAILVALVDQGPLTALLMLAVVIGVQQLEGHILQPFLLGRWVSVHPLGVILAIACGVLVAGVAGALVAVPLAAAANAVVLHLAELAGAEAEKAEPPVPEQETGGPEEAEAQPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UTZ6</accession>
    <name>A0A0Q8UTZ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Benzoate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21020</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896094.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46323">
        <property type="protein sequence ID" value="KRC46323"/>
        <property type="gene ID" value="ASE19_21020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1456447at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042925">
        <property type="term" value="F:benzoate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004711">
        <property type="entry name" value="Benzoate_Transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30199">
        <property type="entry name" value="PTHR30199"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03594">
        <property type="entry name" value="BenE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00843">
        <property type="entry name" value="benE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="200"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="285"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="316"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="345"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="398" mass="39010" checksum="1A1EAE92F1F16E0B" modified="2016-01-20" version="1">MSEESTHGPVLAGVVTAVVGFSSSFVVVLAGLTAVGATPTQAASGLLTLLVTQALGMLWLSVRHRTPIILAWSTPGAALLAASTGVTGGWPAAVGAFVATGVLILLTALVPRLGDLVAAIPQSLARAMLAGVLLPLCIAPVTAVVDAPAAVAPVIVTWLVLLRLAPRWAVPAALGVALVTVLVTADVDAGALAPSLTWTTPHWTASALVGIALPLYVVTMASQNVPGVAVTSSFGYRVPWRESLAVTGLGTVAGAPTGGHAINLAAISAALAAGPAAGPDRSRRWIAAVSASATYLVLAAASSALAAMVAAAEDGLMQAAAGLALLGTLGASLAGALADPKEREAAAATLVVAASGVTVLGIGAAFWALVVGLGCRAVLTGSRSTSTTARSPSAGPSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU41</accession>
    <name>A0A0Q8UU41_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">PucR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_17315</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CdaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893106.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48700">
        <property type="protein sequence ID" value="KRC48700"/>
        <property type="gene ID" value="ASE19_17315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1439158at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041522">
        <property type="entry name" value="CdaR_GGDEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17853">
        <property type="entry name" value="GGDEF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF_2" evidence="3">
        <location>
            <begin position="171"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_30" evidence="2">
        <location>
            <begin position="330"/>
            <end position="387"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="394" mass="41468" checksum="37A90947B6D37491" modified="2016-01-20" version="1">MSPTGSAARKSATRQLRAATGSLSTAAVGRMEADLSWFRELGAEERSWVGMIVQAGVKAFVDWFAEGGGVEPDDDALVVEVFGAAPRAMAGVVDLHQTVELIKLTIDEVERNIQLLLDADVMDEVHAAVLRYGREVAFATAEVYARAAEVRGRWDARLEALVVDAVLRAETDESVLSRASAVGWAARGEVAVVVGNAASESAGTHSGVFDEVRRVAQQRGLDALCAVQGHLLVVILGGVTEPEKDAGPLVNLFGEGAVVVGPVAGDLSQAHISASVALGALRAAVGWPDAPRPVSAHDLLPERILAGDDDARREAVDQLYRPLAESRGELVETLVAYFANGAGIEATARALFVHANTVRYRLGQIGDLTGLTPSVPRDALVLQLALVLGRQAGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU69</accession>
    <name>A0A0Q8UU69_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PKS_AT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17310</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893105.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48699">
        <property type="protein sequence ID" value="KRC48699"/>
        <property type="gene ID" value="ASE19_17310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1123553at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.366.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001227">
        <property type="entry name" value="Ac_transferase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014043">
        <property type="entry name" value="Acyl_transferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016036">
        <property type="entry name" value="Malonyl_transacylase_ACP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00698">
        <property type="entry name" value="Acyl_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00827">
        <property type="entry name" value="PKS_AT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55048">
        <property type="entry name" value="SSF55048"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_AT" evidence="2">
        <location>
            <begin position="5"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="312" mass="32172" checksum="744B7394CE3E9E29" modified="2016-01-20" version="1">MLVIVAPGQGAQTPGFLSPWLEDADAAARLEWLSAVAGLDLVHYGTEADEATIRDTRIAQPLLVGAALVAAQQLGPQQAGAVSGHSVGELAAAVLAGVLSPEQAMVLVRERGRAMADAAAVTPTGMTASLGGDRDEVLAAIEAQGLTPANDNGPGQIVAAGTLEQLEAFAANPPKGARLRPLSVAGAFHSSHMAPAVEHVTGLARSVATADAQTPFLTNSDGTALTDGGEVLTRIVGQIARPVRWDLCLDTMVDLGVTGFLELPPSGTLTGIAKRFFRDRGVSVETFALNSPEQLDEAREFCARHAQQVVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUI4</accession>
    <name>A0A0Q8UUI4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NADH:flavin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_18060</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the NADH:flavin oxidoreductase/NADH oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893225.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48824">
        <property type="protein sequence ID" value="KRC48824"/>
        <property type="gene ID" value="ASE19_18060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1308229at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02929">
        <property type="entry name" value="TMADH_HD_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037348">
        <property type="entry name" value="TMADH/HD_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="2">
        <location>
            <begin position="14"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="3">
        <location>
            <begin position="393"/>
            <end position="628"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="690" mass="75593" checksum="99EF38DFAA536AE5" modified="2016-01-20" version="1">MTDQPTVAAPYDVLFEPVRIGPFTTKNRFYQVPHCNGMGYRDPSAQASMRRIKAEGGWSVVCTEQVEIHATSDIAPFIELRIWDDQDLPALKRIADAIHEGGGLAGIELAHNGMNAPNQLSRETPLGPGHLPVAPDTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSQRYNQRTDEYGGSLENRMRLLKELLEDTLEECAGRAAVACRITVEEEIDGGITREDIEGVLRELGELPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLTTKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADPFLPNKIRDGKLNLIRECIGCNICVSGDLTMSPIRCTQNPSMGEEWRRGWHPERIRAKESDSQVLVVGAGPAGLEAARALGVRGYDVALVEARRDLGGRVTQESALPGLSAWGRVREYREAALAELPNVEIYRESPMSADDIVEFGFQHVLVATGSTWRTDGVARFHTTPLPIAEGAQVLGPDDLFAGRLPSGKKVVVYDDDHYYLGGVVAELLAQKGHEVSIVTTASQVSAWTNNTFEVNRIQRRLIENGVTRVTDHAVVAVGAGGVTVRDVYAGVERDLDCDAVVMVTARLPKEELYLELVARRDAGELLSVRGIGDAWAPGTIAAAVWSGRRAAEEFDAVLPSNDVVPFRREVTQLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUJ2</accession>
    <name>A0A0Q8UUJ2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Fido domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_17570</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48740">
        <property type="protein sequence ID" value="KRC48740"/>
        <property type="gene ID" value="ASE19_17570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1232677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003812">
        <property type="entry name" value="Fido"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036597">
        <property type="entry name" value="Fido-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040198">
        <property type="entry name" value="Fido_containing"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13504">
        <property type="entry name" value="PTHR13504"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02661">
        <property type="entry name" value="Fic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140931">
        <property type="entry name" value="SSF140931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51459">
        <property type="entry name" value="FIDO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fido" evidence="3">
        <location>
            <begin position="110"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="194"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="198"/>
            <end position="205"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR640198-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR640198-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="366" mass="39238" checksum="7588CF582E0D4EA8" modified="2016-01-20" version="1">MSARGPYRAAVPALIGHGSPVFPPPLQAEAEDAVRAITRFDADIASVELAPLAAVLLRTESASSSQIEGVTAGARALALAAIEKRSGRNAELVVANVTAMQRGIELADDISVGSILAVHDALLHGHEYAAPGRFRTEQVWIGSTAISPHAASFVPPHHDRVPAAMDDLIDFVRRTDLPVLVHVAIAHAQFETIHPFNDGNGRVGRTLVHAMLRHADVTRHLTVPVSAGLLADTSAYFDALTAYRAGDVEPIVRQFIAASFRAVDNGRILIEDLDRILQSWTDKLPSRRGSAARRLLPLLVNQPAVNVAYAVETTGVALSAAQRAVEQLEEAGILVRAGAARRNRVWTAPDVIDALDRFAERAGRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUJ3</accession>
    <name>A0A0Q8UUJ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18300</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48870">
        <property type="protein sequence ID" value="KRC48870"/>
        <property type="gene ID" value="ASE19_18300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="341566at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="393" mass="43509" checksum="24761226EA472519" modified="2016-01-20" version="1">MARATRWYPGSREVPLSRLLLGGQNGTTGDQFAAALGDPLWPSRRVVDGPHAEVISRGAGQSDQQILFSSYGRMAMTCIRHTGRYFAATDEAGVVAQARQFLARAGGEQTRIVTGDLHSVPGLPVLVVPIADSDCWQVLDGHHRIALAAAEGRSTVAVRVRRGRVTTPLQDLLRRMSWLGGGRELYQPIDSPELDAKWPTVRCCVDRLEAMEAFLRLRLPALSGSYLDVASCYGWFVDGMSRLGFEAEGIEQDPLGTTVGRLVYGVDPQRIRIGDAAETLRGTRERWDVVSCFSLLHHFVLGRGSCDADELVRLLDRATGRVLFIDTGQEHEKWFRSSLRGWNPDHIRQYLLDHTTFDEVLDLGPDRDAVGPYAGNYGRHLFACVRTDRPVSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUP9</accession>
    <name>A0A0Q8UUP9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ribonuclease BN</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_22220</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896299.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46531">
        <property type="protein sequence ID" value="KRC46531"/>
        <property type="gene ID" value="ASE19_22220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1421045at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017039">
        <property type="entry name" value="Virul_fac_BrkB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30213">
        <property type="entry name" value="PTHR30213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03631">
        <property type="entry name" value="Virul_fac_BrkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="45"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="106"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="155"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="188"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="256"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="321"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="346" mass="37038" checksum="A68D31D3CD2C8492" modified="2016-01-20" version="1">MKIVERVKAKVAEVRDRSPFVDHVVRMQEHFGEVKGSQQAGGVTYFGFLSVFPVLALAFFTVGYLSKVFPDAQDALTRAIDEVLPGLVGTDESQVQLEDIQGAAGAVGLIGLVGVLYAGLGWLSSLQTALIVLFEMPDRLQPSFVIGKLRDLASLVVLGVVLLLSVSASAVLTRMSEQVLDWVHLGAGLGWLVTIIALVFGLAASALLFFLMFRILAQPPVPSRALWSGAWLGAIGFEVLKQLSGVLLVSTRGQPAFQAFGIALILLVWINYFSRVILYAAAWAHTSPLARAERDARRVLPIAVATVVVPEPEGERPKGRAWLTPLAVGGALGTLVGALLGRRPRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUQ4</accession>
    <name>A0A0Q8UUQ4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ferric oxidoreductase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_18685</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893336.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48934">
        <property type="protein sequence ID" value="KRC48934"/>
        <property type="gene ID" value="ASE19_18685"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013130">
        <property type="entry name" value="Fe3_Rdtase_TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01794">
        <property type="entry name" value="Ferric_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="51"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="89"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="123"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="146"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="Ferric oxidoreductase" evidence="6">
        <location>
            <begin position="12"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC48934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="194" mass="20204" checksum="867C4CF777C85B83" modified="2016-01-20" version="1">MNELLWYLSRGTGVTALLALSGAVALGILARSGRDVVGWGRFGANEVHRTTSAAATALVAVHVLTLVLDTASGISLLPALVPFTSDYRPLGVGLGVLALDVLVLLGVTGVLRRRIGPRAFRAVHWSAYALWPLAVGHFLFSGSDAGTWWAVTALVVSGAAVLAAVAWRLTDSFGTRPVRSADGALPLSPKAAQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUR7</accession>
    <name>A0A0Q8UUR7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Bifunctional purine biosynthesis protein PurH</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="8">Phosphoribosylaminoimidazolecarboxamide formyltransferase</fullName>
                <ecNumber evidence="8">2.1.2.3</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="8">AICAR transformylase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="8">IMP cyclohydrolase</fullName>
                <ecNumber evidence="8">3.5.4.10</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="8">ATIC</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="8">IMP synthase</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="8">Inosinicase</fullName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="8 10" type="primary">purH</name>
        <name evidence="10" type="ORF">ASE19_22325</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>(6S)-10-formyltetrahydrofolate + 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide = (6S)-5,6,7,8-tetrahydrofolate + 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:22192"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:58467"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="EC" id="2.1.2.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>H2O + IMP = 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:18445"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="ChEBI" id="CHEBI:58467"/>
            <dbReference type="EC" id="3.5.4.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Purine metabolism; IMP biosynthesis via de novo pathway; 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide (10-formyl THF route): step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 8">Purine metabolism; IMP biosynthesis via de novo pathway; IMP from 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide: step 1/1.</text>
    </comment>
    <comment type="domain">
        <text evidence="8">The IMP cyclohydrolase activity resides in the N-terminal region.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the PurH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.3" evidence="8"/>
    <dbReference type="EC" id="3.5.4.10" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896315.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46547">
        <property type="protein sequence ID" value="KRC46547"/>
        <property type="gene ID" value="ASE19_22325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1049662at2"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00133"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003937">
        <property type="term" value="F:IMP cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004643">
        <property type="term" value="F:phosphoribosylaminoimidazolecarboxamide formyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.140.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00139">
        <property type="entry name" value="PurH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024051">
        <property type="entry name" value="AICAR_Tfase_dup_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011607">
        <property type="entry name" value="MGS-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036914">
        <property type="entry name" value="MGS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002695">
        <property type="entry name" value="PurH-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11692">
        <property type="entry name" value="PTHR11692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01808">
        <property type="entry name" value="AICARFT_IMPCHas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02142">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000414">
        <property type="entry name" value="AICARFT_IMPCHas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00798">
        <property type="entry name" value="AICARFT_IMPCHas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00851">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52335">
        <property type="entry name" value="SSF52335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00355">
        <property type="entry name" value="purH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51855">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 8" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="5 8" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MGS-like" evidence="9">
        <location>
            <begin position="1"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="529" mass="55380" checksum="F73B7A49CA3D0392" modified="2016-01-20" version="1">MSATPDRIAIRRALVSVFDKTGLDDLVKGLAAAGVELVSTGGSAALIESLGLPVTKVEDLTGFPECLDGRVKTLHPRVHAGILADRRLPDHVAQLEQLEVAPFDLVVVNLYPFAATVASGAGVDDCIEKIDIGGPSMVRAAAKNHPSVAIVTDGADYARALEAAQGEGFTYDERKALAAKAFVHTATYDVQVASWMGSVLTDTSEGTGFPAWVGGTYDKSAVLRYGENPHQKAALYLNGFGPAGLARAEQLHGKEMSYNNYVDTDAARRAAYDHGDQPTVAIIKHANPCGIAVGADVAEAHRRAHECDPVSAFGGVIATNVPVSVEMATQVADIFTEVIVAPGYDDGAVEVLQGKKNIRILVAEPLAAGGVETRPISGGLLMQQVDRFQAEGDDPANWTLATGEAADEATLADLAFAWHAVRAAKSNAILLAKDGGAVGIGMGQVNRVDSCKLAVERANTLVEGEERARGSVAASDAFFPFADGPQILIDAGVKAIVQPGGSVRDEETVAACKAAGVTMYFTGTRHFFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUS3</accession>
    <name>A0A0Q8UUS3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17535</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893139.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48735">
        <property type="protein sequence ID" value="KRC48735"/>
        <property type="gene ID" value="ASE19_17535"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="23743" checksum="1D334EC7B633C289" modified="2016-01-20" version="1">MSDAPLTLKHPVTVDRLRLYYALAAARVHLAIDPARNFRGVDDEERLELLRLAATYAGLVAVAGAELEALEGSANDFLGQSLVPAAYVLRAGALLELAWAQRDDDERVAVAATTSWDLVAGMDVSAVSYRVRYNLACYWSSWIDRVIVPPVGTDDRPPTAYPARRALAELRTSLATAPFLAAARLADWAVRDPSLARLRRSSVGELEFVAAVAPYRHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUT5</accession>
    <name>A0A0Q8UUT5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Assimilatory sulfite reductase (ferredoxin)</fullName>
            <ecNumber evidence="3">1.8.7.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_18885</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the reduction of sulfite to sulfide, a step in the biosynthesis of sulfur-containing amino acids and cofactors.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>3 H2O + hydrogen sulfide + 6 oxidized [2Fe-2S]-[ferredoxin] = 7 H(+) + 6 reduced [2Fe-2S]-[ferredoxin] + sulfite</text>
            <dbReference type="Rhea" id="RHEA:23132"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17359"/>
            <dbReference type="ChEBI" id="CHEBI:29919"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="EC" id="1.8.7.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.8.7.1" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893368.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48966">
        <property type="protein sequence ID" value="KRC48966"/>
        <property type="gene ID" value="ASE19_18885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1588103at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050311">
        <property type="term" value="F:sulfite reductase (ferredoxin) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005117">
        <property type="entry name" value="NiRdtase/SiRdtase_haem-b_fer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036136">
        <property type="entry name" value="Nit/Sulf_reduc_fer-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006067">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006066">
        <property type="entry name" value="NO2/SO3_Rdtase_FeS/sirohaem_BS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01077">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03460">
        <property type="entry name" value="NIR_SIR_ferr"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00397">
        <property type="entry name" value="SIROHAEM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55124">
        <property type="entry name" value="SSF55124"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56014">
        <property type="entry name" value="SSF56014"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00365">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0349">Heme</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0883">Thioether bond</keyword>
    <feature type="domain" description="NIR_SIR_ferr" evidence="8">
        <location>
            <begin position="102"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="NIR_SIR" evidence="7">
        <location>
            <begin position="173"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="domain" description="NIR_SIR_ferr" evidence="8">
        <location>
            <begin position="348"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="domain" description="NIR_SIR" evidence="7">
        <location>
            <begin position="424"/>
            <end position="557"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012353"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF03460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC48966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="571" mass="63733" checksum="2825B33039613A97" modified="2016-01-20" version="1">MPDLRFKPERAKFTEIPRPKRAEGQWALGYTEPLNKNEQSKKDDDPLNVRDRILYIYSKRGFDSIDPADLRGRFRWMGLYTQRRPGILGNETAALEEEDLDDRYFMLRVRSDGKLLSPAAVRALGSIGVDFARDTADVTDRENIQYHWIEIENVPAIWERLEAVGLHSLEACGDSPRPFLGSPVAGVAKDEIIDGTPALLEIERRFIGNKDFSNFPRKFKTAVTGHPSMDVSPETNDVSFVGSVHPELGPGFDVWVGGGLSTNPMLAQKLGVWIPLDEVPDVWAGVAGIFRDYGYRRLRSRARLKFLVADWGVEKFREVLENEYLGKKLETLDSPETPVGHRDHIGVHEQKDGRFYVGLAPSAGRISGTALVQLADLMEEFGVEGARLTAYQKIVLIGVDGDRTEALLDRLDAIGLTARPSNWRRNTMACTGIEFCKLALVDTKERARLLTVELEKRFPDLDTPITINVNGCPNACARTQIADIGLKGQMVLSDGEQVEGFQVHLGGATGLRANFGRKLRAHKVTSAGLDDYVTTIVTNYLADRNDGEAFDEWVHRADEDLLRGEKTLESV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUY1</accession>
    <name>A0A0Q8UUY1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phytase-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17920</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893201.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48799">
        <property type="protein sequence ID" value="KRC48799"/>
        <property type="gene ID" value="ASE19_17920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1884225at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027372">
        <property type="entry name" value="Phytase-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13449">
        <property type="entry name" value="Phytase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359453" description="Phytase-like domain-containing protein" evidence="1">
        <location>
            <begin position="23"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="Phytase-like" evidence="2">
        <location>
            <begin position="57"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="398" mass="41865" checksum="C671696EE2BEF9B1" modified="2016-01-20" version="1">MRLLPAVALMGVTGLLAGPALAATAAPSAPTVDKRVTLDAVPLGDFQSTVVDDHGVELGGLGSGLFALGRNEYWTVTDRGPNGEVGDARTFIVPEFTPSLVKVRARGNDLQVLDSLLLTTPAGEPVTGLPNFAVAGDPPPVLADGVTPVAYNANGLDTEGVVRTPDGHFWLVDEYGPSIVEVDASGHVVARHVPAGLEDDYVAAGADYPISGSLPAGLSARRGNRGFEDIALLPDGRTVVVALQSSVVVPGDRDRIITELVSFDTRTGTTLHEYGYRFDAPSTFAAGTRGRDLKISALVPVDQTHVVVEERTDTEARFHTVELDPADPLITEEDKTLLVNLAGVAGVPGKIEGAALKNRSTLAIISDNDFGFVPRAYGLDEDVEQSGVRTTYVEVKLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV09</accession>
    <name>A0A0Q8UV09_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18095</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893232.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48831">
        <property type="protein sequence ID" value="KRC48831"/>
        <property type="gene ID" value="ASE19_18095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="990666at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="305" mass="33132" checksum="E353B4A0EF304058" modified="2016-01-20" version="1">MADPSFTLTQLRYFAAAAELGSMTAASKQLMVSQSAVSTAVAQLEKELGVQLLLRHHARGLTLTSAGEEFYRELRSYLVHTTELVEVARSAGQALVGDLAVGCFTTLGPFELPRLLAACEADHPGIHVSVVEDEHAALKHALRSGRIELALLYGYDLDDDIDHVRIGVAAPYVLVGRGHRLARRKKVALADLAGEPMVLLDLPHSGQYLERIVESAGVRPEIRHRTAGFETVRAMVANGQGWSVLNQRPASPTTYDGAEVVTLEITDPVEPLEIVLASMKGVRLTARAQAFVRSSTREARRRAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVI7</accession>
    <name>A0A0Q8UVI7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21105</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896107.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46336">
        <property type="protein sequence ID" value="KRC46336"/>
        <property type="gene ID" value="ASE19_21105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011075">
        <property type="entry name" value="TetR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16859">
        <property type="entry name" value="TetR_C_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="18"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="200" mass="21718" checksum="1DEE35A784A5AB32" modified="2016-01-20" version="1">MVPRISRREAPSRPRVEGDREQEILDAAIAVLVDVGYDRLTMDAVATKAKASKATLYRKWEGKAALVIDALMSEKAPLEAPADTGSLRGDLLAMFCGHGGLTDQHQTALLGSVVTAIGRDPEFAKAFRERFIAPKVAVGREVYERARQRGELRDDIDLDILTAALPGIVLHRGFLLGDPPTQDLIARVVDQVILPAATRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXT4</accession>
    <name>A0A0Q8UXT4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Rieske domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_15825</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893554.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50086">
        <property type="protein sequence ID" value="KRC50086"/>
        <property type="gene ID" value="ASE19_15825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1632945at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359517" description="Rieske domain-containing protein" evidence="4">
        <location>
            <begin position="24"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="Rieske" evidence="5">
        <location>
            <begin position="45"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="138" mass="13576" checksum="810E1988AA0D9192" modified="2016-01-20" version="1">MSAPVVSRRIVFSGLGALGVAAALAGCAGSGDSDGGSDAKVEPGAELAATGDVPVGGGIVLTDEKIVITQPVAGTFHAFTAVCTHQMLLVTSVEDGRILCANHGSSYSAESGDVEGGPAPSGLARVEIDVQDDKILAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY28</accession>
    <name>A0A0Q8UY28_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16400</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893654.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50186">
        <property type="protein sequence ID" value="KRC50186"/>
        <property type="gene ID" value="ASE19_16400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1713977at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017517">
        <property type="entry name" value="CHP03083_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010872">
        <property type="entry name" value="MDMPI_C-term_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024344">
        <property type="entry name" value="MDMPI_metal-binding"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07398">
        <property type="entry name" value="MDMPI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11716">
        <property type="entry name" value="MDMPI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03083">
        <property type="entry name" value="TIGR03083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MDMPI_N" evidence="2">
        <location>
            <begin position="11"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="domain" description="MDMPI_C" evidence="1">
        <location>
            <begin position="149"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07398"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="267" mass="28955" checksum="3524E47245E328E1" modified="2016-01-20" version="1">MTRLGDAAYLDHIRTESARFADVLATCDPAARVPSCPDWDATDLLWHLAEVQHFWHHVITHRPAPPEDYADPVRPATHDEVLAFFRATHDAFVEALAAADPAEAAWSWSTAEDSQRVGFTYRRQAHEALIHRLDAELAAGVPTALDAALAADGVDEALDVMYGGLPDWGRFEPEPLYVEYRATDTGASVWTQLGTFGGTAPDGTVRSGEPDQHVVPAPGRAADVVVTGTADQLDGWLWHRYDDSGITVEGAPEVWARAAAVLGQAID</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYB7</accession>
    <name>A0A0Q8UYB7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_15880</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893562.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50095">
        <property type="protein sequence ID" value="KRC50095"/>
        <property type="gene ID" value="ASE19_15880"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05829">
        <property type="entry name" value="Sortase_F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005754">
        <property type="entry name" value="Sortase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023365">
        <property type="entry name" value="Sortase_dom-sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042001">
        <property type="entry name" value="Sortase_F"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04203">
        <property type="entry name" value="Sortase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63817">
        <property type="entry name" value="SSF63817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359529" evidence="3">
        <location>
            <begin position="28"/>
            <end position="573"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="398"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="491"/>
            <end position="512"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="491"/>
            <end position="505"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="573" mass="61950" checksum="2D5E0FAFD57A9C39" modified="2016-01-20" version="1">MRSLVRVLSCGLLAALLLTTLVLPARAERLGPGHPSPPGFSGYTTRSGHELGVARVPDGPFGICLDTGTRRWPRRAGTPTTVRHPVVGYLLSVHLDAARRDGVLATALWWVVGRLERLNAEPDRMTARMAELRRESPRLFTAVVRRATRLVDEAARYAPPTTGYRAAPPVLTTDGLTGTLAALGIRSAAGRWVPGIRVRVTLTGATFDGGRSTLTLRTGTDPLFLGWQRTGASAVAVRVRYSGIPEHRFRRYRSGARFQRVAASAGTRSLVTALTTPELSTPRISTRVNRQRATVGALLVDRVRVTGSRGVAHEGEWELLGPVRPDADLRCRAARWAGAPLAGRGTFRTRGDATVEVGRTRLRSGGCYTYRERLLPSSVSLGAPWTRAGLVEETSLVTPRQPHVPRHPQVDTGGKRRAGRAPDAGDAGAGRVVVPGAVRARLVGTSFHGRTLGAPRPRGSAGVWRGSVPLASLVGTTLLAGHVADDRGRPGAFHGLRRARPGDRVTTRDGSGTVRHWQVRTVRTFDRRRLPRSLFQQGVDRRLLLITCVGRVTLPGGGFHYRRNLVVEAVPIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYE6</accession>
    <name>A0A0Q8UYE6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16285</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50164">
        <property type="protein sequence ID" value="KRC50164"/>
        <property type="gene ID" value="ASE19_16285"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="61" mass="6607" checksum="7936A187AEDF9A9E" modified="2016-01-20" version="1">MLSGCARLHELHQVPGGVLQQDGCTGRLIRLRPGDPEGSADVAWTPELVEPLRSSLSELTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYJ8</accession>
    <name>A0A0Q8UYJ8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Pup--protein ligase</fullName>
            <ecNumber evidence="2">6.3.1.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Proteasome accessory factor A</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Pup-conjugating enzyme</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">pafA</name>
        <name evidence="4" type="ORF">ASE19_16555</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + [prokaryotic ubiquitin-like protein]-L-glutamate + [protein]-L-lysine = ADP + phosphate + N(6)-([prokaryotic ubiquitin-like protein]-gamma-L-glutamyl)-[protein]-L-lysine.</text>
            <dbReference type="EC" id="6.3.1.19"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein degradation; proteasomal Pup-dependent pathway.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein modification; protein pupylation.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="2">The reaction mechanism probably proceeds via the activation of Pup by phosphorylation of its C-terminal glutamate, which is then subject to nucleophilic attack by the substrate lysine, resulting in an isopeptide bond and the release of phosphate as a good leaving group.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Pup ligase/Pup deamidase family. Pup-conjugating enzyme subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.1.19" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893681.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50212">
        <property type="protein sequence ID" value="KRC50212"/>
        <property type="gene ID" value="ASE19_16555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="537546at2"/>
    <dbReference type="UniPathway" id="UPA00997"/>
    <dbReference type="UniPathway" id="UPA00998"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016879">
        <property type="term" value="F:ligase activity, forming carbon-nitrogen bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019787">
        <property type="term" value="F:ubiquitin-like protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019941">
        <property type="term" value="P:modification-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010498">
        <property type="term" value="P:proteasomal protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070490">
        <property type="term" value="P:protein pupylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02111">
        <property type="entry name" value="Pup_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022279">
        <property type="entry name" value="Pup_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004347">
        <property type="entry name" value="Pup_ligase/deamidase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42307">
        <property type="entry name" value="PTHR42307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03136">
        <property type="entry name" value="Pup_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018077">
        <property type="entry name" value="UCP018077"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03686">
        <property type="entry name" value="pupylate_PafA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="active site" description="Proton acceptor" evidence="2 3">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="63"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="420"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR018077-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="453" mass="51978" checksum="9FF5B287EA8B1F9E" modified="2016-01-20" version="1">MDRRIFGIENEYGVTCTFRGQRRLSPDEVARYLFRKVVSWGRSSNVFLRNGARLYLDVGSHPEYATPECDDVTELVTHDKAGERVLEGLLLDAEQRLHDEGIAGDIYLFKNNTDSAGNSYGCHENYLVSRAGEFSRLADVLIPFLVTRQIIVGAGKVTQTPRGTSYAVSQRAEHIWEGVSSATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVASCDLVLRMIEEGVVMRDLTMENPIRAIREISHDVTGRRKIRLANGREASALDIQGEYLTKARDFVDRRGISTPVIERSLDLWERTLKAVEADDLGLVDREIDWVIKWKLIDRYRAKNGLPMSHPRVAQLDLAYHDIHRNRGLYYLLEKRGAVARVTNDLKIFEAKSVPPQNTRARLRGEFIRKAQERRRDFTVDWVHLKLNDQAQRTVLCKDPFRAYDERVQRLIDGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYN0</accession>
    <name>A0A0Q8UYN0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">HTH araC/xylS-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_16725</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893891.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50363">
        <property type="protein sequence ID" value="KRC50363"/>
        <property type="gene ID" value="ASE19_16725"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032687">
        <property type="entry name" value="AraC-type_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12625">
        <property type="entry name" value="Arabinose_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="223"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="34278" checksum="2D0D00793BC312D2" modified="2016-01-20" version="1">MPAMFEPPVTRTSDFPRQVAGTALLVAAGASVEVGVADLLRGSGLSARDLADHRREVTAQQELRVVRNLLAAAPSMTGALVGARYHASTFGPLGFALISSATLGEAANLTFRFLDLSFTFCVPTASLDGDDVVISVDPRDLPADVRAFLVERDLTAIATVLREIAGGAPTPVLSTDDGRAELRLAASWFDVPLPQANPHAFAMAEALCRELVASRRSRTGVAEEVRILVAQRLSSGAPMAEVAGVLGLSERSLRRHLTDAGTSYRTVLDEVRRGAAEDLLRRPGLSVDDVARELGYAEATSFGAAYRRWTGRTPRSSRRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYW9</accession>
    <name>A0A0Q8UYW9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_18235</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48857">
        <property type="protein sequence ID" value="KRC48857"/>
        <property type="gene ID" value="ASE19_18235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="2"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="149"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="219" mass="24097" checksum="4D37CAA35B8CB059" modified="2016-01-20" version="1">MRITIIDHHLLFADSLALTLEQEGYLATAIRFDPSDVSMAAVLAAALRSAGRLVLLEQDLGRVGDGIRLVAPLTASGASVVLLTESLDRALWGEALRQGAKHVLHKTCSVSEVAHTARRIHQGLPLMPQAQREALMAEALDRRDEEYLLRSRLARLTTCESEVLEALMKGAQVREIARSRVVVEATVRSQIKSILAKLEMRSQVSVVCAAYRVGWQPRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0J5</accession>
    <name>A0A0Q8V0J5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_18480</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893300.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48899">
        <property type="protein sequence ID" value="KRC48899"/>
        <property type="gene ID" value="ASE19_18480"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="1"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="226"/>
            <end position="468"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="6"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="473" mass="50779" checksum="BC7A2310FBF9E354" modified="2016-01-20" version="1">MHALCGANGAGKSTLIKVIAGLEHADTGVIELDGEPVRVANPRHAADLGLGFIHQELNLVPTFSVLRNLAMGSGRTGRWGQLDLRRLSRDAVVVLERLQADISLSAQVDKLSVADRWMVSLARSLMRPARFIAMDEPTASFTDDEAHRLIKVIDELTSTGVGILYVSHRLDEVLSISDEITVFRNGRLVTTLAARETDRAALTTHIVGREVERVVASEQGDPGGTERAVRLRALGLSRSPHVLNASFDVKVGEIVGIAGLVGAGRTELARLLVGADRATAGRMELDGAGYAPRSPHQAIRSGVALVPEERRSQGLVLTGSVEDNLAMAEHGAARRTLRPFSPRRSRRTAEALIERFAIKTRSSRTAVHLLSGGNQQKAVVGKYVRTGPGLLVMDEPTVGVDVGARAEIYRIIGELASDGTSVLVISSDFEELAICHRVLVMRAGRIIAEVPASQFDKDHLTALSFGAPDAEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2Z7</accession>
    <name>A0A0Q8V2Z7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">DEAD/DEAH box helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_17215</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893798.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50329">
        <property type="protein sequence ID" value="KRC50329"/>
        <property type="gene ID" value="ASE19_17215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="66530at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021904">
        <property type="entry name" value="DUF3516"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12029">
        <property type="entry name" value="DUF3516"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="31"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="3">
        <location>
            <begin position="233"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="703"/>
            <end position="724"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="844" mass="92962" checksum="00C0BAE6B5E727D9" modified="2016-01-20" version="1">MPDAQDAAYDRITRYAEERGLELYPHQEEAILSLLAGDNVVLATPTGSGKSLVAMAAAMAALTDDRVTFYTAPIKALVSEKFFDLVEVFGAADVGMLTGDVAVNADAPVICCTAEVLANIALREGAGADVGMVVMDEFHFYGEPGRGWAWQVPLIELPEAQFLLMSATLGDTTELAADLTRRNGRDTSIVDQAERPVPLDFSWSLSPMGEKLEELVTTGQGPVYVVHFTQAAAVEHAVSLLSGPGRLDTVLPKDRKDQIAERLAPVRFAAGFGKTLSKLLRQGIGVHHAGMLPRYRRLVEQLAQAGLLTVICGTDTLGVGINVPIRTVLFTGLAKFDGSRQRVLRTREFLQIAGRAGRAGYDTAGYVVVQAPEHVIENEKAKAKAAAKNAAMSAEKQAKRGSKAQLKKPPPGTVVWTEATFDKLVEGRPEALKSQMKVDNAMLVNVLSREEDAFPVMRRLLMDNHEDRRTQLRLAKRAVRLARSLVTSEVLTRLDEVDRFGRRYVLTEALPVDFALNQPLSHFALAVLDVLDPDSDTFVLDVVSVVEATLEAPRPLLMAQRHAARGEAIAALKADGVEYDERMALVEEITWPEPLADLLEPLFETYRERHPWLAPDALAPKSVVREMWEQGMGFTDLVSRYQVARSEGLVLRYLTDAYRALRQTVPASYRRDELELLVEWLGETVRQVDSSLLDEWEALADPSHAPSAVSHHEPPPPPRPLSQQGRVFDVMVRNALWRRVELVARDDVPALAALDEGAEWGERDWDQAIEDFYDEHDRLLTDADARGPALLTVEKAPGRWIATQTLHDPDGNHDWVIRAEVDLAASDEAGEAVVHTLEMVSLTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3D1</accession>
    <name>A0A0Q8V3D1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Agmatine deiminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893834.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49104">
        <property type="protein sequence ID" value="KRC49104"/>
        <property type="gene ID" value="ASE19_18175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="771174at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004668">
        <property type="term" value="F:protein-arginine deiminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009446">
        <property type="term" value="P:putrescine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007466">
        <property type="entry name" value="Peptidyl-Arg-deiminase_porph"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31377">
        <property type="entry name" value="PTHR31377"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04371">
        <property type="entry name" value="PAD_porph"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="343" mass="36874" checksum="C66579CCCB74FCBE" modified="2016-01-20" version="1">MPAETEPHDATWMAWPAGSYTLGESPAEADEARRTWAAVANAIAEHEPVHVLVPPAERAAARSLLAGEVERHEAPLDDAWYRDIGPTFVLGQDAGGPALGAVNWVFNGWGQQDWATWELDAVASDVATEASGAVRIDSSMVNEGGGIHTDGRGTFLVTETVQLDPFRNPGWTKADVEAELARTLGARAVIWLPCGLTRDNERYGTRGHVDIVATFTAPGRVLLHEQRDPAHPDHAVSRRLAAVLEGARDADDKPIEVTSIPAPSGLRDAEGWVDHSYVNHYVANGAVIACAFDDEIDAEARSILADAYPGRQVVQVDARPLFARGGGIHCITQQQPAVPKEES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3I4</accession>
    <name>A0A0Q8V3I4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15475</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50019">
        <property type="protein sequence ID" value="KRC50019"/>
        <property type="gene ID" value="ASE19_15475"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018114">
        <property type="entry name" value="TRYPSIN_HIS"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00134">
        <property type="entry name" value="TRYPSIN_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359671" evidence="2">
        <location>
            <begin position="28"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="319"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="449" mass="47004" checksum="96BA4C0C040E1A03" modified="2016-01-20" version="1">MVRCWAALSGVGLVASLLLVAPQLADASGALPERAATASAASALLSTDGVADYWTPARMRSAVPMDLDADGDAIAGSGPATGTTRARAATLTAPRSVGKLFFTTAQGNAVCSAAALNTAQKNVVITAGHCANSGGVPNLLGCSKGRYYTNFLFVPRYANGSAPDGQWVGTRAVTHQQWISECDAFEFDQALIEVAPRNGRNLVDVVGGNGVAWNFPAEQADINVWGWPAETPYDGMTVKRCHGTTTELDANGDAFLSCPMTGGASGGPWFVGMVGSNVGYIWAVTSRRTTTGPAYVLAYPIGDSIRTLLADARLNARTVASSSTTTSTTTSTSPTRAVTGLSVTPNHSVIGRGQLVVLRIRSAARRWVAIDASRRSARGPWTRVATRWASASGTVAVSQRLVRVGYRWYRVRNAAGRQVVVRVRINVCPLPAQRSAAVVDNTGCTGPTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3P0</accession>
    <name>A0A0Q8V3P0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Magnesium chelatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_17455</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Mg-chelatase subunits D/I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48721">
        <property type="protein sequence ID" value="KRC48721"/>
        <property type="gene ID" value="ASE19_17455"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01451">
        <property type="entry name" value="vWA_Magnesium_chelatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041702">
        <property type="entry name" value="BchD/ChlD_VWA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045006">
        <property type="entry name" value="CHLI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32039">
        <property type="entry name" value="PTHR32039"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13519">
        <property type="entry name" value="VWA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="3">
        <location>
            <begin position="473"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="295"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="332"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="362"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="651" mass="68278" checksum="A34056043FA674D2" modified="2016-01-20" version="1">MTSIDQHFPFSAVVGADGPDGPDPMALALILTTIAPEVGGVLVRGEKGTAKSTIVRALAAVLPPVDGRPVPLVELPIGATEDRVTGSINLESALAEGKAEYEPGLLAKAHRGILYVDEVNLLHDHLVDLLLDAAAMGRATVERDGVSMTHEARFVLVGTMNPEEGELRPQLLDRFGLTVEVAAPRDPALRAEVVRRRMAYDADPAGFAERYAAAEAALQTRIAAARALLASVRLTDAGLLKIAEVCATFDVDGLRADIVTARTAVAHAAWSGRSQVTLDDIRVAARLALPHRRRRKPFDAPGLDEDLLDQVLGDDLPPEPDGPEPDGPEPDGPEPDGDHPEGPHSEDDAPAEGAEDSLEPGAPDPTSSSTGAGAHGDNDVTSGTGATYRTRLLTVRGIGAGTAGRRSRARTSNGRRIGASKPDRPGSTGAIHLTETIRAAAPHQFARGRRDGRLVLQQADLRVAVREGRESNLVLFCVDASGSMAARKRMEQVKTAVLSLLLDAYQRRDKVGLVTFRGACAEVALPPTHSVDAAAQRLEELPAGGRTPLAEGLLEAAHLLSVEQTRDPQRRPLLVVVTDGRATSGADAVARSRAAADLLAAAGITCVVVDCEAGPMRMGLAATLAEHLGAEHVPIGEVSAEALVDAARRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V497</accession>
    <name>A0A0Q8V497_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cell division protein FtsK</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_18640</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Essential cell division protein that coordinates cell division and chromosome segregation. The N-terminus is involved in assembly of the cell-division machinery. The C-terminus functions as a DNA motor that moves dsDNA in an ATP-dependent manner towards the dif recombination site, which is located within the replication terminus region. Required for activation of the Xer recombinase, allowing activation of chromosome unlinking by recombination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the FtsK/SpoIIIE/SftA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893847.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49117">
        <property type="protein sequence ID" value="KRC49117"/>
        <property type="gene ID" value="ASE19_18640"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041027">
        <property type="entry name" value="FtsK_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002543">
        <property type="entry name" value="FtsK_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018541">
        <property type="entry name" value="Ftsk_gamma"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17854">
        <property type="entry name" value="FtsK_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09397">
        <property type="entry name" value="FtsK_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01580">
        <property type="entry name" value="FtsK_SpoIIIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00843">
        <property type="entry name" value="Ftsk_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50901">
        <property type="entry name" value="FTSK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="45"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="74"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="108"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="166"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="FtsK" evidence="7">
        <location>
            <begin position="461"/>
            <end position="661"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="224"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="235"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="478"/>
            <end position="485"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC49117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="812" mass="86808" checksum="8EF67723B0463401" modified="2016-01-20" version="1">MRAFTALGRGVVAVWLAFAHTIGAVTRGIGHGAREIEPEQRRDGFGLLLCGVALIIAAAIWFEVPGGVMDFARAAVSGTVGIVGWLVPLLVLLAGGRVMRDPVGNGPAGRQVIGWSALAFGLLGIVHIANGSPEPVQGDTSALRDGGGAVGYVVSALLLDLLRSPAVVVGLLALLSFFGVLVITATPLYRVPDRMREIGDLLLGRHHDYVGDETQPLRLDDTFERMGDPAYDTPVITEPKKRRRKKEEPDPALEESMALEEPIDLPLVDDEPAAPGLSEAGMSALERRAAARAATAPADETGELEPPPHADLPQRVEQLALSGDIVYTLPDAAALKAGDPHRARSKASDDVVERLQTVLDEFNVDAQVTGYTRGPTVTRYEIELGTGVKVEKILGVQRNISYAVGSEDVRILSPIPGKSAVGVEIPNTDKEIVSLGDVLRSNVARNDHSPLVAGLGKDVEGGFVVANLAKMPHLLVAGATGSGKSSFINSMITSVLMRSTPDEVRMIMVDPKRVELNAYEGVPHLITPIITNPKKAAEALEWVCREMDMRYDDLANFGFRHINDFNKAVRDGKVEVPPGSERVLTPYPYLLVIVDELADLMMVAPRDVESSIVRITQLARAAGIHLVLATQRPSVDVVTGLIKANVPSRLAFATSSLADSRVILDTPGAEKLVGQGDGLFLPMGASKPIRVQGSWVGEAEIQQVVKHCKSQLEPTYREDVTAPAASSKVLDDDIGDDMDLVVQAIELVVSTQFGSTSMLQRKLRVGFAKAGRLMDILESRGVVGPSEGSKARDVLVKPDELDAVIMTIQGEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V515</accession>
    <name>A0A0Q8V515_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">(2Fe-2S)-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893188.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48786">
        <property type="protein sequence ID" value="KRC48786"/>
        <property type="gene ID" value="ASE19_17835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1819473at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="1">
        <location>
            <begin position="2"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="17139" checksum="B20B5707512EF795" modified="2016-01-20" version="1">MPKHTFQLNGETVTVDVEDDVRILWVLRDVLGVTGPKYGCGINVCKACTSHVNGKAFNPCSVPVAAIGADDEITTIEGLADTVPGDGLHPMQEAWLEHDVAQCGYCQPGQIMAAVALVNKVRREGRAITEEDLDAIRNVCRCGTYARIRDAIRTGAEAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5U4</accession>
    <name>A0A0Q8V5U4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10425</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894754.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52821">
        <property type="protein sequence ID" value="KRC52821"/>
        <property type="gene ID" value="ASE19_10425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1961053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="278" mass="29523" checksum="28BAF91786632800" modified="2016-01-20" version="1">MQDIIERLDRELSAAPGTGVDIGRSVAAGRRALRRRRLATAAGVLATVVVIGGAAALVVGGDDPRTGQDVTQQPPTSPTATATTTDPADGVVPVDIHLDGSVEPATGAQVIERAQFTASGGQVAEVFHLRLDGREYYAYGETADSKVGWTPLPVDGLSLDEWAEQQLTRGDGGATGDRSWVSFDDRSRLHPKAGVEIGEQRADPGFGERFAAPGEFTAAAEVRRSDATWFLAVRQTPDGATEAIPYRKDDRITTLDAFISYARDQYATNDQGGSEGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V613</accession>
    <name>A0A0Q8V613_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavin-nucleotide-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09595</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52676">
        <property type="protein sequence ID" value="KRC52676"/>
        <property type="gene ID" value="ASE19_09595"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024747">
        <property type="entry name" value="Pyridox_Oxase-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12900">
        <property type="entry name" value="Pyridox_ox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="233" mass="24741" checksum="593A1D94A79659D8" modified="2016-01-20" version="1">MHWAREVVSQVGDAPLQPTDRTRINRGRNRAVADRAELLALLADGLVAHLGIEAGGHPVVLPTAYAVDTDGPDEGGTLYVHGSVAARWLLNSVDRTVCVTVTELDGLVAGRSAFHHSMNYRSAVVIGTARLVDDPDERQHALDLVVDHMLPGRSATLRPSTRKELAATAVLAVPLHEASMKARSGGPVDEPSDVEASVWGGHVPVRRVIDVPVPAEDNLPGLSVPADVAGRTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V632</accession>
    <name>A0A0Q8V632_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nitroreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10645</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894793.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52860">
        <property type="protein sequence ID" value="KRC52860"/>
        <property type="gene ID" value="ASE19_10645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1847197at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="2">
        <location>
            <begin position="7"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="176"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="224" mass="24285" checksum="70749EBAC59A0647" modified="2016-01-20" version="1">MEFAEVVRRRRMTRAYASDPVDPAVVERALDHATRAPSAGFSQGWAFVVLDTPEAVRGFWAAQTDAAAEGGTPDRWLAGMMAAPVVVVPCSRRSAYLDRYAEPDKARAGLQDHDEGRWAMPYWHLDTAMASLLVLQSVTDAGLGACFFGLVPDRVDAVKAQLGLVDTGAEEAPHPIGAITIGHPADATTGARGSASRRRRTPWQETAHRGRWGNGWTPRTETHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V641</accession>
    <name>A0A0Q8V641_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PHB_acc_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09380</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894577.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52639">
        <property type="protein sequence ID" value="KRC52639"/>
        <property type="gene ID" value="ASE19_09380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2050904at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012909">
        <property type="entry name" value="PHA_DNA-bd_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07879">
        <property type="entry name" value="PHB_acc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PHB_acc_N" evidence="2">
        <location>
            <begin position="8"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="90"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="182" mass="19531" checksum="E22B0B4124E5700D" modified="2016-01-20" version="1">MGKDDPRLIKRYANRKLYDTDLRQFTTLDDLSGLLDKGIRFVVRDHDSGDDRTDEVLAQVLGRRVRGGSGGADLLSGLLRAPSQIAQQLVGEATGLGTTAPEPEEPTKPKKAKSGKKKSGAATKAKKSAKPDGKADEVERQQQEIAELRSQISELTAAVSLLVQERIDAHEASPDSGAADAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6L9</accession>
    <name>A0A0Q8V6L9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16060</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50125">
        <property type="protein sequence ID" value="KRC50125"/>
        <property type="gene ID" value="ASE19_16060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013107">
        <property type="entry name" value="Acyl-CoA_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08028">
        <property type="entry name" value="Acyl-CoA_dh_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_2" evidence="1">
        <location>
            <begin position="171"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="324" mass="34342" checksum="4025B4D24336112B" modified="2016-01-20" version="1">MVRTLAGACGSTGWVASVLGVHPWHVALFPEQAQDDVFGPDPDTIICSAYAPVGRLEAVTGGYRLTGHWSFSSGVDHASWVLLGAVLPGDDGTPQHVTVLVPRADFRTDDVWDVVGLRGTGSNDVHVADAFVPAHRVLPHAAQSALLAPGQDVNTGALYRIPFAAVFATAVTAPVLGAVTGCLESWLLHMRERVRGSTSGGRFADDPFAQVAIARAASEVDAACLQMDRNLDALVAHAVAQEEIPLELRARTRRDQVLGTERALHAVDLLFKTAGGNSLHRGNPIERAWRDAHAGSVHVANDIDRALSGYGRLAFGLPVDDALV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6M7</accession>
    <name>A0A0Q8V6M7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Aminopeptidase N</fullName>
            <ecNumber evidence="4">3.4.11.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">ASE19_10885</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Release of an N-terminal amino acid, Xaa-|-Yaa- from a peptide, amide or arylamide. Xaa is preferably Ala, but may be most amino acids including Pro (slow action). When a terminal hydrophobic residue is followed by a prolyl residue, the two may be released as an intact Xaa-Pro dipeptide.</text>
            <dbReference type="EC" id="3.4.11.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.2" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894836.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52904">
        <property type="protein sequence ID" value="KRC52904"/>
        <property type="gene ID" value="ASE19_10885"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045357">
        <property type="entry name" value="Aminopeptidase_N-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042097">
        <property type="entry name" value="Aminopeptidase_N-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001930">
        <property type="entry name" value="Peptidase_M1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014782">
        <property type="entry name" value="Peptidase_M1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027268">
        <property type="entry name" value="Peptidase_M4/M1_CTD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01433">
        <property type="entry name" value="Peptidase_M1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17900">
        <property type="entry name" value="Peptidase_M1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00756">
        <property type="entry name" value="ALADIPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63737">
        <property type="entry name" value="SSF63737"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0732">Signal</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <feature type="signal peptide" evidence="12">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359750" description="Aminopeptidase N" evidence="12">
        <location>
            <begin position="25"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M1_N" evidence="14">
        <location>
            <begin position="81"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M1" evidence="13">
        <location>
            <begin position="309"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="30"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="35"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012564"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00015611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF17900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC52904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="494" mass="53676" checksum="0F3D1AF80D0A19F6" modified="2016-01-20" version="1">MNRTAGGARLRTGALVLLPALALAACGSHRVPSGQAPTAAPTSTPSGTPSDTGAGDLAIARSETREDSVYPDIGDPLVDALHYDLGLTWDPAKDRLTGREVLTFRATGDSATIPLDFNEQLAISELTVDGQPVEHTVAGTHLTVEHPIEADEQYELGLTYAGTPAPAPAPSTRSDFTQGVGWSVTGDHETWTLQEPYGAFTWYAVNDQPSDKALYDFTLTVPSPWSGVANGVLRRTTTRSGQTTNRWHLAEPAASYLVTVAFADYQHTDLKSASGVPIQVWAPAGGKALPGGTSTAPAAIDWLEKVLGPYPFDSFGVVVVDNDSGMETQTMVTLGDTDYSLSPAVMVHEAAHHWYGDTVTPADWSDVWMNEGMAMYLQGMWEAEQEGITIEDKMDQWAAFEVQLREAAGPPAAFDPAQFGDGNIYYGPALMWQELRERIGDDAFFRVLREWPAAQENGTADREEYWDWIEQETGEELSDFFDAWLLGKQTPARD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6R0</accession>
    <name>A0A0Q8V6R0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Potassium transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_11130</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894883.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52950">
        <property type="protein sequence ID" value="KRC52950"/>
        <property type="gene ID" value="ASE19_11130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1194802at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005451">
        <property type="term" value="F:monovalent cation:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006153">
        <property type="entry name" value="Cation/H_exchanger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030151">
        <property type="entry name" value="NhaP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32507:SF7">
        <property type="entry name" value="PTHR32507:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00999">
        <property type="entry name" value="Na_H_Exchanger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02080">
        <property type="entry name" value="TrkA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="62"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="93"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="122"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="190"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="223"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="273"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="297"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="335"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="367"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="5">
        <location>
            <begin position="403"/>
            <end position="485"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="499" mass="52271" checksum="7F2578253DEBCC1A" modified="2016-01-20" version="1">MTFDVHQLDSFLLIGAAVTFLAVLAVRMSSGAGLPSLLVYLLMGVALGEAGAGIGFEDAQLAHAIGFGALAVILAEGGLTTNWRDARPAMRMGLSLATLGVVVSIGVMAVGAHFVLGLSWELAILLGAVCSPTDAAAVFSVLRVVPLPKRITGALEAESGLNDAPTVVLVTLIASGAVGEHGWLGATGIVVYELVAGVLFGLAAGFGGAWIMRRAALPSSGLYPIAVLCLTFIAYGTAAAVHASGFAAVYVAALVLGNTDLPHRATTRSFVEGLAWLAQIGLFVMLGLLLSPERITWGTIGTAVVTGTLLTVLARPLSVLASAVVRPMPWNELGFLSWAGLRGAVPIVLTTIPLAEGVDGATRLFDIVFVLVILDTVITAPTLPWVARVLRVTRRSEPRGFDLEAAPLEKVAADLLQVTISPVSRLHGVEIGELRLPVGANVSMIVRDGQAMVPERRTVLRHGDDLLVVTPRKLREATEQRLRQVSEGGRLAQWLEEDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6S6</accession>
    <name>A0A0Q8V6S6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17770</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893177.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48775">
        <property type="protein sequence ID" value="KRC48775"/>
        <property type="gene ID" value="ASE19_17770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1268567at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="145"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="252"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="283"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="310"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="337"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="361"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="401"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="439"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="636"/>
            <end position="660"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="680" mass="72804" checksum="34B08F4628920BFB" modified="2016-01-20" version="1">MLLAVEQAPPAGGAALDQVFIAFGAFAAIYVPLGIFLLRERDGKSTFIGRLADRVSAIDGLPRWAGLPSYLAVLSLISCGFGVYWDVPIHMQNGRDEGPLANPSHFPIMFGIFFFLAAGVISAALAKDPLPRRTVRLTPKWRVPMGTLVLLGAGMIAAAGFPADDVWHRLFGQDVTEWGPTHVMMIGGAVTCILAVPLLYAEGAQLGRPPAQRWTWFGGLATGGLGLFGKILPPVRREAPASVLADRSAWATRLYITVVIGICIIPVAFLMEFDLGVPQFPAATMFIISGFLTSWIFTAGRLFFGPGGALVTWLAYTGLRVLIFAITLPVPDIHRAHWLLFLGPALCIELVALLVRNRGPVFAAGAALLGGTVGLATEWWWMDFFMPYPLPPDTQQMPLMLGVGGLAAAGGGLLGWSFARHIERIADLPEASAPVRDGMAVAGRWVGTAGTLVFLVLMGIFAPPASAGEVEVVKDCAGDECRTTYEPVEGTDVIMGHVTYNDDCLGADGCMTRVTVRTDDDRVEDAVWISALAYQGRHRTDGKVPGDGMLSVAMDPTGNAGEYRSAEPLPIYGNWKVLIRLHLAPTTMVSIPVHMPADTAIDGPASGLVQVDDGTDAAFVHEPFMLQRERKPDVPVWLWTTMYGVVIASWLVLLAFYGWLYAAAAGASAVPAKEESAPAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6W2</accession>
    <name>A0A0Q8V6W2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16170</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50352">
        <property type="protein sequence ID" value="KRC50352"/>
        <property type="gene ID" value="ASE19_16170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14602">
        <property type="entry name" value="Hexapep_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="224" mass="23191" checksum="A4CCFA3B3A467690" modified="2016-01-20" version="1">MLNRSVHAAWQWVERVGDVAPGTDLGDRFGDFGRGSCLAFPVATVVNPEAIHVGTDTLIGKYSTLSVGYGPTQEVLPERGLVIGDRCVIGSRACITAHESITIGDDVWFGQDVFVSDASHGYQDPDVPVGLQFGAHQPVSIGSGSWIGHGAIILPGTTIGRNVVVAAGSVVRGTVEDHAVVGGVPARTIRRLEPGVGWVSAAGDVRTQAGVLPSAAAATVEHVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7C6</accession>
    <name>A0A0Q8V7C6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DAO domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11935</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895022.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53092">
        <property type="protein sequence ID" value="KRC53092"/>
        <property type="gene ID" value="ASE19_11935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="912110at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="10"/>
            <end position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="412" mass="43920" checksum="D93353ED31EA63A6" modified="2016-01-20" version="1">MTSNTENPAHVVVVGAGVIGATTALYLARSGVQVTLVDRERPAWGASGRNAGYISMVTRAPGGQLSLANLSRELYGELAEEIADFEFQPNGALVYYYEEQLPLIPGFVERRVADGLPMEIVDGDRARELFPLLPDDVVGAIHSLRDCYLHPEKFVEAAVAAAVELGTKVVRADVLELDIQDGRCVGVATSEGQLAADAVAVTAGSWTPALLEKAGLPFHVLHMRMQMAETAPVEERFNVAAYGPSLFHEYAFVRELPGYDDDIVMHPLQQIMPEVGLLELVCQRADGRLWLGCPIEFVDGPDASPEPTVAGLAQTFGVLGDHIPALQHIPVERVWGGIAPQTGDGLPVLDGVSRVPGLFIGSGHAYGATVGAGSGRVLADLILGQQPAIDMTPFRYERPAITEGMARAATLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7H4</accession>
    <name>A0A0Q8V7H4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MTS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12265</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895074.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53147">
        <property type="protein sequence ID" value="KRC53147"/>
        <property type="gene ID" value="ASE19_12265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1816476at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071704">
        <property type="term" value="P:organic substance metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022446">
        <property type="entry name" value="CHP03704_MeTrfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007848">
        <property type="entry name" value="Small_mtfrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05175">
        <property type="entry name" value="MTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03704">
        <property type="entry name" value="PrmC_rel_meth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MTS" evidence="2">
        <location>
            <begin position="77"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="177"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="262" mass="26811" checksum="10AA1D61C93C5729" modified="2016-01-20" version="1">MPDLVARLRAAGCVFAEEEAALLTEAAPDDAALEALVRRRIDGEPLELVLGWAAFDGLRVGIDPGVFVPRQRTAYLVELADDALAATLGPAAPATVVDLCCGSGALGLALAHRRPGSTLHATDDHPAAVACAARNLAEVGGTVHLGDLAAPLPLGLRGQVDCLLANVPYVPTDAVAAMPPESRDHEPRSTVDGGPDGLDVLRRVAMSALTWLRPGGTMHSEVAVGQVDAALAALGAAGLRARVDHDEERDATVVSGTSPSGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7J0</accession>
    <name>A0A0Q8V7J0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nitrite reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12520</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895119.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53192">
        <property type="protein sequence ID" value="KRC53192"/>
        <property type="gene ID" value="ASE19_12520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1149616at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007419">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041854">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04324">
        <property type="entry name" value="Fer2_BFD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="2">
        <location>
            <begin position="13"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="domain" description="Fer2_BFD" evidence="1">
        <location>
            <begin position="467"/>
            <end position="508"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="522" mass="55227" checksum="1A4D725677F68B9D" modified="2016-01-20" version="1">MTESHRPEEPRQRLVVVGSGMATTRLVEELVARRATELYDVTVLGDEPVAPYNRILLSAVLEGTHRPEALTLRSPEWYAEHGVDLRLGARVLGVDRDHRDVMLVDGTLIEYDVLVLATGSIPTLPPIRGLVRMDGSLHDAVHAFRSLGDCQRLLEAIETTDEDGRPVNRRAVVVGGGLLGLQVARALGARGLDTEIVEGAEHLLHQQITSAAGRILARDLKKLGVAVYTGARAIRINDASDGAGLLGQAIGQGQVRVLDPLPRNPGRVSLRLDNGFTLDTDLLVLTAGGRPSTALARGAGLEVRRGIVVDDRLASVTDPGIHALGDCVEHDGRTTGFVPPAWEQAGILAGILCDEAVKYDGARIVARLRATDLDVAVLGDADREVAAGGEVVEVSNPISGSHRRLVVRDGRIVAATLVGDLSRVGLITQHFDRQTVLGPREPGNLLMPERTADEGSAALTLPDDAEVCACAGVTAGRIRGCSSFEQVRDTTRATTGCGGCASTVRQLLGTPSPALATTQKGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7X3</accession>
    <name>A0A0Q8V7X3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">6-phosphogluconate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_14040</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 6-phosphogluconate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897049.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53454">
        <property type="protein sequence ID" value="KRC53454"/>
        <property type="gene ID" value="ASE19_14040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1245550at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004616">
        <property type="term" value="F:phosphogluconate dehydrogenase (decarboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019521">
        <property type="term" value="P:D-gluconate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016054">
        <property type="term" value="P:organic acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004849">
        <property type="entry name" value="6DGDH_YqeC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006114">
        <property type="entry name" value="6PGDH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006183">
        <property type="entry name" value="Pgluconate_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11811">
        <property type="entry name" value="PTHR11811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00393">
        <property type="entry name" value="6PGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00076">
        <property type="entry name" value="6PGDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01350">
        <property type="entry name" value="6PGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00872">
        <property type="entry name" value="gnd_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0311">Gluconate utilization</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="6PGD" evidence="3">
        <location>
            <begin position="160"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM01350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="301" mass="32016" checksum="2F7EF230A224C13D" modified="2016-01-20" version="1">MEIGLVGLGKMGGNMRTRLRNAGHTVVGYDRNPDLADVASLAEMVEALPAPKVVWVMVPAGDPTRSTIAELKELLSEGDLVVDGGNSKYTDDAINAASLAEKGIGFVDCGVSGGVWGLENGYALMYGGSVDDIAKVQPAFDALKPEEGGAVHAGPTPGAGHFAKMVHNGIEYAMMQAYAEGWELLEKVDIVENVPAIFESWRYGTVIRSWLLDLLTEAIEDDEHLEKLRGYADDSGEGRWTVQAAIDNAVPMHVIAASLFARFTSRQDDSPAMKAIAAMRNQFGGHAVHTDPPPGGEANPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8J2</accession>
    <name>A0A0Q8V8J2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12740</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53662">
        <property type="protein sequence ID" value="KRC53662"/>
        <property type="gene ID" value="ASE19_12740"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="187" mass="20148" checksum="BEE68342F077C729" modified="2016-01-20" version="1">MRPLTDADRDAAAAVVKEAFGDEGTTVVDLWADVVARGLVRAELVATDGDEVVGHVGLSHAWLDTRSELVDIVVLSPLSVLPAHQKRGVGRLLLAAAVAQAQQLGAPVVVLEGDPGYYGKHGWQPAATYGIEAPSLRIPRPAFQVVALPEHEPWMTGRVVYRDVWWEHDAAGLRDPLLAQVEMSLPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8R4</accession>
    <name>A0A0Q8V8R4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Transport permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_14545</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ABC-2 integral membrane protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896956.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53547">
        <property type="protein sequence ID" value="KRC53547"/>
        <property type="gene ID" value="ASE19_14545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1891092at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC_2_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006648">
        <property type="entry name" value="DrrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51012">
        <property type="entry name" value="ABC_TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="61"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="113"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="141"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="171"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="238"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="ABC2_membrane" evidence="9">
        <location>
            <begin position="12"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU361157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="266" mass="28790" checksum="60BC7CD66F683F99" modified="2016-01-20" version="1">MSTAAQALNDGWVVAQRNLVKIIRVPEILVFVLISPIMFVLLFAFVFGGAIDVPGVNYREWLIAGIFGQTIVFGATFTGAGLAEDMQKGIIDRFRSLPMSNSAVLVGRTASDVVYNVLSLVIMALTGFLVGWRINEGVLKALAGFALLLVFGYAISWVMAWVGLMVPSVEVINNASFIVIMPLTFISNAFVPTSSFNSVLKPVVEWNPVSAVTQASRDLFGNTGVGPGSDAWSLQHPVTYTLIWVVGIIVVFAPLSVRQYRLTTSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9A6</accession>
    <name>A0A0Q8V9A6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_06700</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895215.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53784">
        <property type="protein sequence ID" value="KRC53784"/>
        <property type="gene ID" value="ASE19_06700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="8"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="123"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="235"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="385" mass="41275" checksum="7221D768736775FF" modified="2016-01-20" version="1">MRSKIYDDDHDSFRSMVADFIAKEVAPHHDAWEAQGQVPRDFYGRLGELGILGMQVPEEYGGGGERSFKYNAIVIEEAAAAGVTFGGYSVHTNLILPYLMELASDEQKERWLPGFATGEKMFAIAMTEPGTGSDLANIATKATLSDDGTHYVLNGAKTFITGGAQADVVLVVCRTQAFDPNDRRAGLTILCVDTKSDGFAVGKKLPKIGQKASDTAELFFADVKVPVEDVLGEAGRGFYYLGHNLPQERLTIALGGAATAEAAIAFATAYTQDRTVFGQSVASFQNTKFVLAECSAEATAARLMADAALVALDEGTLSIADAARAKLFCTEVAGRVIDKCLQLHGGYGYITEYPIARLYADSRVTRIYGGTSEVMKTIIAKDLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9N3</accession>
    <name>A0A0Q8V9N3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminoglycoside phosphotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895310.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53878">
        <property type="protein sequence ID" value="KRC53878"/>
        <property type="gene ID" value="ASE19_07285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1003984at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="34"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="329" mass="35951" checksum="4C74517BD235C51D" modified="2016-01-20" version="1">MTADAAAADTRVAELALPRYGFGSRCTLRMINLSENATFLVEEGERRAILRVHRVGYHARSDIESELAWLAALGEESGVVTSEVVPATDGALVVTVVADDVERHAVLFHLVPGIEPDDVALGTSDFETLGAITARMHEHARGWTPPAGFHRFSWDWDHTLGDEPRWGRWQDGIGVGPAEEAALGAAVEVVRERLAAYGVGSDRFGLVHADLRLANLLVEGDLVTVIDFDDCGLSWFMYDFGTAVSFIEHDPRLPQWQAAWLRGYRSVTELSAEHEAMLATFVMLRRLLLVAWMGSHSHSRECQDLGPGYTAGTVGLARRYVASDGASLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAH1</accession>
    <name>A0A0Q8VAH1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidase_M23 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16740</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50247">
        <property type="protein sequence ID" value="KRC50247"/>
        <property type="gene ID" value="ASE19_16740"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011055">
        <property type="entry name" value="Dup_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016047">
        <property type="entry name" value="Peptidase_M23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01551">
        <property type="entry name" value="Peptidase_M23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51261">
        <property type="entry name" value="SSF51261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359864" description="Peptidase_M23 domain-containing protein" evidence="1">
        <location>
            <begin position="22"/>
            <end position="639"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M23" evidence="2">
        <location>
            <begin position="224"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="639" mass="68481" checksum="98520BFAB0CFDD81" modified="2016-01-20" version="1">MGLSLLTAPLQAALTSTPAHAVAAPVSVTQVQPVNPDSTSQLYVERVAPRYAGDAAGWRLNMDMRVANTSTTSNLTLTTVTVSYPGSSIGSQTSTVNKTMAKSGLSGSTLFLVVPDNRINAFPLPASVSVKLGFSGFDSKTVSRTLVEYVNKTPSGGYRFPASAVSGGHWKLGTGHDATSHHRGVQNQRFAYDLQIVKWNGSAYSTVKPGATKPYANTDYWTFGTPIYAMADGFIRKCRKDQPDNVPGVLSPEPEVEGNHLYIEHATGEVALYAHFKAGSLSSTLCPANAATGLNIFVQQGQFLGYSGNSGNSSGPHLHLHLADRVGFSDSAGTAQGLPLRFHHATARMQATPTSTPGFTALTNSSEAALRQGELINPNTCGWQRVVVGGTQWARHGVNNTCWQEEFNDTALAGYRLVWRQQAQDGSASRVASIWRPKGGLPWAARNGQTAAQYQASFTSYVDAGYRLTHVDSYLQDGAVRYSSVFTKTSGPAWTAYHGVSAATHQAKFNSLTAAGYRPRQISVVYVDGARQYTAMYEKVAVGGFVSLTNIAEADYQTVYNQQVAAGRRPVYLDTYLVGTSVRFSAIFTSGAPATVARHNLTSAQYQTEFNTQTAAGRLLVAVSAYRSGGVLKYAALWN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAK5</accession>
    <name>A0A0Q8VAK5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amine oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08645</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895548.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54116">
        <property type="protein sequence ID" value="KRC54116"/>
        <property type="gene ID" value="ASE19_08645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="418913at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="15"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="433" mass="46634" checksum="4C60EECF806B245F" modified="2016-01-20" version="1">MTDNFDAIVIGAGAAGLFTAARLQHQGYRTLVLERLDKVGGRASTTDVDGFKVNDGAIVIECGTFTERTFRELDLPWEIREPSPPILYRIKGKDVDVTGGGWGFLLQKLTRQGAKLVGGIGAARKDDAALPEDQMTLQEWVSRYTKNEGVHGIFRNMAASVFSVGSEELPAKVFLTYFTRKSAFKRFGFHPEGTIGVWKALAGAIERDGGEVRLSTEVERILVEDGRVAGVVLAGGETLTAPVVVSNVGPAATVALVGSQAFDADYLDEVKRNDRPTAMITYNFASQERLVDAPGMLSFATSRRLAYIANFTDTCPEMAPEGWNLYTGTGVPKPAVGDFDEEAEYALLLEDLRETIPGFDDRARILSRVTTRDGWPPQRAVAGFDMSHDTPLTGLWNVGDAVKEYANGGTTACAETAEIVAGKIAAAFPPAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC06</accession>
    <name>A0A0Q8VC06_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04230</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894384.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54696">
        <property type="protein sequence ID" value="KRC54696"/>
        <property type="gene ID" value="ASE19_04230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="121" mass="12800" checksum="2BC49485E72BA46F" modified="2016-01-20" version="1">MFLVFAFILAGVVAPIHQRVIQHAPTSRIVRQLRRSQRRLPGVAAAMALGLGLITFGHLVQVAISSGAPAALYGAVLILMWDGIKLNLLGVAMLTSWLGEQTRGGVAVPQRLGPSAGRVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCM4</accession>
    <name>A0A0Q8VCM4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">S26 family signal peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_14635</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896941.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53561">
        <property type="protein sequence ID" value="KRC53561"/>
        <property type="gene ID" value="ASE19_14635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1741894at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006465">
        <property type="term" value="P:signal peptide processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06530">
        <property type="entry name" value="S26_SPase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019533">
        <property type="entry name" value="Peptidase_S26"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001733">
        <property type="entry name" value="Peptidase_S26B"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02228">
        <property type="entry name" value="sigpep_I_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="157"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="194" mass="20556" checksum="AC851FC357B71FA4" modified="2016-01-20" version="1">MAAHRRPSTVRRVLGRTVRASGTIGLAVVTLAALAYLMPTLMGYDRYVITGGSMTGTHDKGSVVFEKPVAADDLGVGDVITYQPPPASGVTTLVTHRIIAIGHDEQGHQVLRTQGDANPDPDPWKFSLTSSEQPVVDFSVPYVGYVLIALADRDTRMLVIGVPAALVALLSLGQLVAALRSRPDPHLGGRVRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCS1</accession>
    <name>A0A0Q8VCS1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05395</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54891">
        <property type="protein sequence ID" value="KRC54891"/>
        <property type="gene ID" value="ASE19_05395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="12"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="18876" checksum="0B17DA40059E868A" modified="2016-01-20" version="1">MAVVLAAALASTACSSDDRAEPDTGDPTPAASSEAGSPSDEGIGGVAPATGKQMSDDHISFRLPAGDPWEVDYGGTVGFLAPPDDRVSQINIGGAGATIDDLAEAARLGLASLKDVRPTARREANRTVAGQEVVVLAADDDHGYYYVVAAINAGTHVAIHFDLPRNDAAAHDLIDAVLASVEWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCW3</accession>
    <name>A0A0Q8VCW3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05330</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894202.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54879">
        <property type="protein sequence ID" value="KRC54879"/>
        <property type="gene ID" value="ASE19_05330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003012">
        <property type="entry name" value="Tet_transcr_reg_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00400">
        <property type="entry name" value="TETREPRESSOR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="2"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="25"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="166" mass="18079" checksum="5B1E634DDC5ED39B" modified="2016-01-20" version="1">MGYRRTDVLERAIELLDAGGIDGLTMRKLAADLGVQPGALYHHFASKDALYAAIADEILRRGRRPAEILAWDAEVQLLCLGLRSAMARHRDGALLITQVHRADGEALEQPLRDALARGGVDDDLARVGARTLVRLVLAHEHDDADDFNVALGLVLDGLRQRVTAST</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD08</accession>
    <name>A0A0Q8VD08_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">4HBT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55125">
        <property type="protein sequence ID" value="KRC55125"/>
        <property type="gene ID" value="ASE19_04735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1814691at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="61"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="15113" checksum="D7E36EADBC857A26" modified="2016-01-20" version="1">MAGRPASPDHGRMHTLARTWIDDVLAGSPVTRALGIEVVAAAPEEVTLRLAFRHDLTTVPGVLHGGVVATLVDVAGAAASASGLTPGDAATGGATTQLDVSYAGAAGSDLTATATVLRRTRSATHSQVVVRDLDGEVVALAQVTSRIFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD57</accession>
    <name>A0A0Q8VD57_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Disulfide bond formation protein DsbA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05545</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894395.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55146">
        <property type="protein sequence ID" value="KRC55146"/>
        <property type="gene ID" value="ASE19_05545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="996965at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001853">
        <property type="entry name" value="DSBA-like_thioredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01323">
        <property type="entry name" value="DSBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DSBA" evidence="1">
        <location>
            <begin position="3"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="213" mass="23175" checksum="95D46C245168B58B" modified="2016-01-20" version="1">MRIEIWADVVCPWCYIGKRRLEKAIAGFEHGDDVEVVYRSYELDPFAPEVGTESTVTVLGRKFGADEAGTRAMMARADEVAAAEGLTFSHADALHARTLTAHRLLHLAKAEGLQHELMEQVLAAYFTRGESLGDHDVLRKAAAEAGLDAGRVEEVLASTEYRDDVMADVAQAQAYGSSGVPFFVIDGRFGISGAQPTELFEQALAQAWSSREG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDA4</accession>
    <name>A0A0Q8VDA4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09745</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894642.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52704">
        <property type="protein sequence ID" value="KRC52704"/>
        <property type="gene ID" value="ASE19_09745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="138"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="193"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="233"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="26903" checksum="624FC690894A810B" modified="2016-01-20" version="1">MSLTVARALQPVGTAGKLFAFALDVGRGLFRRPFQTREFLQQAWFIASVTIVPTALVAIPFGAVIALQVGGLIKQFGAQSFTGSASVLAVVQQAGPIATALLIAGAGGSAIAADLGARKIREELDAMMVLGIDPIQRLVVPRVLACMLVAVFLNGMVSVVGVGGGYVFNVILQDGTPGAYLASFTALAQLPDLWIGMIKALVFGLIAAIVAAYKGMNANGGPKGVGDAVNESVVITFLLLFVVNFTLSTIYLQVVPPKTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDD1</accession>
    <name>A0A0Q8VDD1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09390</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894579.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52641">
        <property type="protein sequence ID" value="KRC52641"/>
        <property type="gene ID" value="ASE19_09390"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359928" evidence="2">
        <location>
            <begin position="21"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="120" mass="12760" checksum="0E502251FCFEEDD7" modified="2016-01-20" version="1">MTAPATKAPARKAPARKAPAATAPATKAPATKAPAKKAPAKKSRKKSDRVVTDYFSGLVDTTKDILDDLLETAGDVEEKARKRSKKAAKAVVPSKKDIKGVRDQVKDLGKQTRKLAKIGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDJ2</accession>
    <name>A0A0Q8VDJ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Tellurium resistance protein TerC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_06465</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TerC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894478.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55071">
        <property type="protein sequence ID" value="KRC55071"/>
        <property type="gene ID" value="ASE19_06465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1917125at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005496">
        <property type="entry name" value="Integral_membrane_TerC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022369">
        <property type="entry name" value="Integral_membrane_TerC_rswitch"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30238:SF0">
        <property type="entry name" value="PTHR30238:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03741">
        <property type="entry name" value="TerC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03718">
        <property type="entry name" value="R_switched_Alx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="78"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="103"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="131"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="192"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="225"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="253"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="296"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007511"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="349" mass="38587" checksum="C453B2C9DC1ADEBB" modified="2016-01-20" version="1">MDVTTLEWTITIAATVAVLLFDVVVIARDPHEPTMKECAVALCFYVGAALAFGAFIWLHHGHDYGIEFYTGWLTEYSLSIDNLFVFIILMSALKVPRKYQQEALLVGIVLALVFRGIFIALGYALIENFSWVFYIFGAFLVYTAVKLVKSYGGHDDEHPEDNAIVSFARKRMRVGEAYHGLKLWYVENGVRFVSPIVIVIIALGVTDILFALDSIPAIFGITQEPYLVFTANVFALMGLRQLYFLLGGLLQKLVYLSLGLAFILAFIGVKLVLHALHENELPFINDGHGVHGAPEISSLFSLGVIIVTLVVTAVASLVRAGKVDDHVPDHAVATREQGDVDDTQGPDWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDJ5</accession>
    <name>A0A0Q8VDJ5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Glutathione synthetase</fullName>
            <ecNumber evidence="10">6.3.2.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">GSH synthetase</fullName>
            <shortName evidence="10">GSH-S</shortName>
            <shortName evidence="10">GSHase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Glutathione synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">gshB</name>
        <name evidence="13" type="ORF">ASE19_10125</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + glutathione + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13557"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:58173"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="10">Sulfur metabolism; glutathione biosynthesis; glutathione from L-cysteine and L-glutamate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the prokaryotic GSH synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.3" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894698.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52765">
        <property type="protein sequence ID" value="KRC52765"/>
        <property type="gene ID" value="ASE19_10125"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00142">
        <property type="reaction ID" value="UER00210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004363">
        <property type="term" value="F:glutathione synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00162">
        <property type="entry name" value="GSH_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006284">
        <property type="entry name" value="Glut_synth_pro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004218">
        <property type="entry name" value="GSHS_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004215">
        <property type="entry name" value="GSHS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21621:SF4">
        <property type="entry name" value="PTHR21621:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02955">
        <property type="entry name" value="GSH-S_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02951">
        <property type="entry name" value="GSH-S_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 10" id="KW-0317">Glutathione biosynthesis</keyword>
    <keyword evidence="3 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0464">Manganese</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 10 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="12">
        <location>
            <begin position="135"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC52765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="330" mass="35219" checksum="50D40742CD7D3407" modified="2016-01-20" version="1">MSVLVVADPWATLDPAIDATVGLVAAAQDLGVAVRTCTPEDLSVVGGRVRARATPVTLGPRARGADHRWLVSTPWSRPGRPQEIDVAADTQLVLLRIDPPVDGRYLHTTYLLDLVESAGTRVVNRPEGVRALHEKLVALHFPELCPATLVTPDPAEVRRFVTAHGSAVVKPLDGFGGLDVWLLRDDGAARALAESATLAGRRHVIVQAYLPAVREGNKRLFLLDGEVVGAVLRRPDPDDFRIGAPCARAEVDDADRRIVAAVAPLLRRHGIAMAGLDVIDGRLIEVNVTCPGGTAKADALLGTDLSGTYLRRLLHLSHPTAPLPKAKVPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEK4</accession>
    <name>A0A0Q8VEK4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Citrate synthase (unknown stereospecificity)</fullName>
            <ecNumber evidence="2">2.3.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11915</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Carbohydrate metabolism; tricarboxylic acid cycle.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.16" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895018.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53088">
        <property type="protein sequence ID" value="KRC53088"/>
        <property type="gene ID" value="ASE19_11915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1412360at2"/>
    <dbReference type="UniPathway" id="UPA00223"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036440">
        <property type="term" value="F:citrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.580.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016142">
        <property type="entry name" value="Citrate_synth-like_lrg_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016143">
        <property type="entry name" value="Citrate_synth-like_sm_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002020">
        <property type="entry name" value="Citrate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036969">
        <property type="entry name" value="Citrate_synthase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11739">
        <property type="entry name" value="PTHR11739"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00285">
        <property type="entry name" value="Citrate_synt"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48256">
        <property type="entry name" value="SSF48256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="272" mass="29155" checksum="347F4F16FA3B37F1" modified="2016-01-20" version="1">MKNSERYWSSKVSVATDDKVYIRGYDLEDLIGALPFTGSVYLLIKGELPTPSQIRVLDAALNAVLDYSLEKPGTVAARFAVSANPSVAAGLAAACLSVGSHTLSTEETGIFIEGTYREFQDSSLSMAEFARNKVAQLRAERRRIPGLGHPVFKKVDPRGQLLKSIAVAEGYWPESAELYEAVHAAFVALPGKGDIPINDVGVMAAVLHGLGFTPAEGAGVAILSTMPGVIAHISEELAANRPIRVIARDQVDYDVQRGRNFADEWASVGGQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEP6</accession>
    <name>A0A0Q8VEP6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11575</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894955.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53025">
        <property type="protein sequence ID" value="KRC53025"/>
        <property type="gene ID" value="ASE19_11575"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="168" mass="18353" checksum="F7F8D94215E274FB" modified="2016-01-20" version="1">MTSGFVLFAAVDPEALTLLGEVEDAERIGAGHVVWWSALVDEDLFWAREEILRRIVEATGRPALLGLTLDSDFLGVVGRTVEGSLWDGVVDREAAEDYREEGLAEEYDVVVPEFAAPEVAVREAIAWAEAAGLSADRSALEAMFSEHEWEKPADQYWMDLLSAVGLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEX1</accession>
    <name>A0A0Q8VEX1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12375</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895095.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53168">
        <property type="protein sequence ID" value="KRC53168"/>
        <property type="gene ID" value="ASE19_12375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2071199at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359971" evidence="2">
        <location>
            <begin position="34"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="98"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="99"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="142"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="207" mass="21895" checksum="A55495A19B2F2AD2" modified="2016-01-20" version="1">MTPMKRPLVAASATVLLALSLSACGGAPTDASKDDYCKAVNSFEGNDDLIKAVTDEDWDKAADLVKDAVGEIEDVGTPEDIPDDAREGFEIQIDAAEGISGDDFEKAMKDQEDPFEAGLSGDEKKKVEAYNDYENETCSDSDSDSGSDSGSSDDATEVPSIDPEDLPSIDPDDIPSIDPSDFASIDPDDLASMQSELAELTEGIPTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEY8</accession>
    <name>A0A0Q8VEY8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894531.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52594">
        <property type="protein sequence ID" value="KRC52594"/>
        <property type="gene ID" value="ASE19_09125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2092143at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012667">
        <property type="entry name" value="CbtB_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09489">
        <property type="entry name" value="CbtB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="63" mass="6543" checksum="993E0CCE9A18C71C" modified="2016-01-20" version="1">MAHTTLVPGRYAAPTAGLALALVALLGVLFLLQENGLLLSADAASYLHEVTHDARHALGVPCH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFV7</accession>
    <name>A0A0Q8VFV7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13320</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53329">
        <property type="protein sequence ID" value="KRC53329"/>
        <property type="gene ID" value="ASE19_13320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="30"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="285" mass="31157" checksum="4452FF8C51C08AD3" modified="2016-01-20" version="1">MSPMSPMSPHDRRLRHGRVRVVDVGAGPPLVLLHGLGGTWRNWEANIPALARRHRVIAPDLPGFGDSEPYAGRVDAARYVETVVELLDQLDVGTATFVGNSMGGLITMEVAVRHPERVDATVLVCSGGLPLTSARHRLLTLPQARMMNRFLRLHAVRWVVRRSERVRLLLGGRVFHDARSVPPELLGVALRGLAGVGFDAALAAGAGYDARLRAPAIACPTLLLWGREDPLLPVAMGHELHRLIPGSSLEVWDDTGHCPMLEHPARFDERVTAFGEQVRSERPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGM1</accession>
    <name>A0A0Q8VGM1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12120</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895049.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53122">
        <property type="protein sequence ID" value="KRC53122"/>
        <property type="gene ID" value="ASE19_12120"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="66" mass="7357" checksum="76BD68187B690480" modified="2016-01-20" version="1">MQQTHRVLLVGTAGQFAVTTVSTQFGVLIFTAAMCLTDSCARERHLQDAALRPVVVDNPYAQREHW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGW1</accession>
    <name>A0A0Q8VGW1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltransf_11 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02475</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892727.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56709">
        <property type="protein sequence ID" value="KRC56709"/>
        <property type="gene ID" value="ASE19_02475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1664438at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="64"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="276" mass="28821" checksum="A40499ACEC139CB9" modified="2016-01-20" version="1">MADTDALAGLTATSFHRGNVAEDASADTAGQVFVLDMQESLPGVLRLRDWAMAALDPQPGETAVDVGSGTGAEVRRLAAAVGESGRAIGIEPHAGLRAVATERSSGTGATYLDAEATDLPFEDASVDVVRCERVFQHLTDPAGAVGEFARVLRPGGRLVVIDSDWGTAVQTPGDPELLRRLWDFRDSQSPNPHAGRHLPGQLVRTGLTVDPDVAATAVVPPPGALLVLVQKSLEDARAAGVVTQAECDQLVDEIRAAQDAGQAFMAVTMFAVLGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGW2</accession>
    <name>A0A0Q8VGW2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02500</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892732.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56714">
        <property type="protein sequence ID" value="KRC56714"/>
        <property type="gene ID" value="ASE19_02500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1425840at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="152"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="213"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="245"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="269"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="13"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="150"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="301" mass="31102" checksum="B95DD0A855DEB593" modified="2016-01-20" version="1">MSSEARRPVLLATLALLGMTACWGSTFFLIKDLLERVPTVDFLAVRFLLAGAVMLLAAPRAIARLSADVRRRALVLGALYGVAQILQTAGLAHTPASVSGFITGLYVVATPVLAAAVLRTRINAGTWAAVVLATAGLGVLTLDGLSIGYGEAITLVAALLYAAHIVGLGAWSTPADAIGMSILQVLVIAGICLVAALVSGEAGIVLPERGSDWASLIYMALVAGAAAMLAQTWAQSHLPPTRSAIIMSMEPVFAAFFAVLLGGESVTGRMVLGGVMVLMAMLVVEALPRRHIEGEVTHLAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH76</accession>
    <name>A0A0Q8VH76_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05005</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894256.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54825">
        <property type="protein sequence ID" value="KRC54825"/>
        <property type="gene ID" value="ASE19_05005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914381at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046172">
        <property type="entry name" value="DUF6174"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19671">
        <property type="entry name" value="DUF6174"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360034" evidence="2">
        <location>
            <begin position="36"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="165" mass="17401" checksum="FE89E1E0904929D1" modified="2016-01-20" version="1">MSIPRPVVRTLLAPALTAVLALGLSACSHEDDATASDPTGTDPSPTVTDDGAPTWPTFAPADYTYRLEVMCFCPMTGPVEVTVADGEVVSATGLRNPGKGRPAPEFLRLTINDVIAKANDPSVAKADVTWPDGQDHPSRVAIDQIENAVDDEVTYVIRDVRVSAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHJ2</accession>
    <name>A0A0Q8VHJ2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Prepilin leader peptidase/N-methyltransferase</fullName>
            <ecNumber evidence="10">2.1.1.-</ecNumber>
            <ecNumber evidence="10">3.4.23.43</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_03915</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Plays an essential role in type IV pili and type II pseudopili formation by proteolytically removing the leader sequence from substrate proteins and subsequently monomethylating the alpha-amino group of the newly exposed N-terminal phenylalanine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>Typically cleaves a -Gly-|-Phe- bond to release an N-terminal, basic peptide of 5-8 residues from type IV prepilin, and then N-methylates the new N-terminal amino group, the methyl donor being S-adenosyl-L-methionine.</text>
            <dbReference type="EC" id="3.4.23.43"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the peptidase A24 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="10"/>
    <dbReference type="EC" id="3.4.23.43" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892975.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56958">
        <property type="protein sequence ID" value="KRC56958"/>
        <property type="gene ID" value="ASE19_03915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2046608at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010627">
        <property type="entry name" value="Pept_A24A_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014032">
        <property type="entry name" value="Peptidase_A24A_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000045">
        <property type="entry name" value="Prepilin_IV_endopep_pep"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06750">
        <property type="entry name" value="DiS_P_DiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01478">
        <property type="entry name" value="Peptidase_A24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00864">
        <property type="entry name" value="PREPILNPTASE"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="10" id="KW-0645">Protease</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0808">Transferase</keyword>
    <keyword evidence="6 10 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="104"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="127"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="153"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="194"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="233"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="domain" description="DiS_P_DiS" evidence="13">
        <location>
            <begin position="12"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_A24" evidence="12">
        <location>
            <begin position="110"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF06750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC56958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="27065" checksum="2738B64F887B43D9" modified="2016-01-20" version="1">MLDVLVPVFAGLLGLNIGSFLNVVVHRVPAGESIVHPPSACPKCGHAIRNRHNVPVLGWLVLRGKCFDCGEPISARYPLVEAGTGVAFALVALRFGADEDGLRLLPAYLAFAGIGIALALIDLDVKRLPDVIVLPSYPVLAALLLVDGDGEALVRAAIGGAILFAFFFIVWFAAPGGMGFGDVKLAGIVGAMTAYLTWGTLLVGAFMGFLLGAVAGVMLMVSGKAGRKTAVPFGPFMILGAWAAILGAAGLGDYYLDLIGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHJ3</accession>
    <name>A0A0Q8VHJ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03960</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892982.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56965">
        <property type="protein sequence ID" value="KRC56965"/>
        <property type="gene ID" value="ASE19_03960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2080614at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="69" mass="7451" checksum="D6D64558B954E5A1" modified="2016-01-20" version="1">MKISASLPVDDVEFLDRFAAEHGDTRSGALQRAVALLRHRDLGDQYEAAWASDSADDWDATASDGLATT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHP4</accession>
    <name>A0A0Q8VHP4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">HTH gntR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13860</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897077.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53426">
        <property type="protein sequence ID" value="KRC53426"/>
        <property type="gene ID" value="ASE19_13860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1875458at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="28"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="253" mass="27089" checksum="6852A15B8F09D6E1" modified="2016-01-20" version="1">MSATSRPRSSPRHGTRTRGAIFAPLEDVGRAVRVEQRLADAIRSGVLRDGERLPSESELAAMLGVATVTAREALVALRAQGLISTVRGRNGGSYVTRANLHDPDAQAARLAAMSRVELRDRGTLHLVILTGCAELAAELADEADVDLLASLLPAADDHDPGHWRHADAELHLSLAALSQSARMTRQVVALEADFGALLRQPLGDEAFQAFTRTCHEELLAAVRAHDGEAARAAVRRQLAGALDELAVLHASYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ18</accession>
    <name>A0A0Q8VJ18_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Adenylyl cyclase class-3/4/guanylyl cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12245</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the adenylyl cyclase class-3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895070.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53143">
        <property type="protein sequence ID" value="KRC53143"/>
        <property type="gene ID" value="ASE19_12245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1635706at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004016">
        <property type="term" value="F:adenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009190">
        <property type="term" value="P:cyclic nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07302">
        <property type="entry name" value="CHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001054">
        <property type="entry name" value="A/G_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00211">
        <property type="entry name" value="Guanylate_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00044">
        <property type="entry name" value="CYCc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50125">
        <property type="entry name" value="GUANYLATE_CYCLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Guanylate cyclase" evidence="2">
        <location>
            <begin position="168"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="337" mass="36250" checksum="908A089C16B19E9A" modified="2016-01-20" version="1">MDQPHDPAPDGGVVGALEEHLLGEVPHLTQEQVAAAAGVPLGTANQLWHLLGFAHVPDDAVAFTQADVQALRLASDLVGLGILSQERQDGLVRTWGRSFARLADWQVALLADVAGELGADPTEGLLAISDEVMPRVERLQSYVWRRHLLSASARMLAESGSGASATLAVCFVDIVGYTSRSRTLSDRELVSWLESFETAVLELTVDRGGRIIKNIGDELLIVADSPEAMADIALALTTRGADPDDPFPAVRAGVAYGEVVTRLGDVFGPVVNIAARLTSVARPNSVLVDLGTYEALSGRTVEHDDDETRASSYRFRRLRRVSVKGYSRLKVWALQPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKK7</accession>
    <name>A0A0Q8VKK7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Non-homologous end joining protein Ku</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">ku</name>
        <name evidence="5" type="ORF">ASE19_04635</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer. Interacts with LigD.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the prokaryotic Ku family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894314.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54768">
        <property type="protein sequence ID" value="KRC54768"/>
        <property type="gene ID" value="ASE19_04635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1724780at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006303">
        <property type="term" value="P:double-strand break repair via nonhomologous end joining"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00789">
        <property type="entry name" value="KU_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01875">
        <property type="entry name" value="Prokaryotic_Ku"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006164">
        <property type="entry name" value="Ku70/Ku80_beta-barrel_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009187">
        <property type="entry name" value="Prok_Ku"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016194">
        <property type="entry name" value="SPOC-like_C_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41251">
        <property type="entry name" value="PTHR41251"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02735">
        <property type="entry name" value="Ku"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006493">
        <property type="entry name" value="Prok_Ku"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00559">
        <property type="entry name" value="Ku78"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100939">
        <property type="entry name" value="SSF100939"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02772">
        <property type="entry name" value="Ku_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0227">DNA damage</keyword>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="2" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ku" evidence="4">
        <location>
            <begin position="52"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="255"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="258"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="275"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="311" mass="33650" checksum="DD3896FA2B432396" modified="2016-01-20" version="1">MRAIWKGAVSFGLVSVPVKLYSATESHDVSFRQVHAKDGGRIKYQRVCAIDGEEVPYSDIAKGFETEDGEMVVLTDDDMANLPTTSSREIAVEKFVPAEQIDPLLFEKSYYLEPEGTGAKPYALLRQALLESKRMAVVTVALRQRTTTAVLRVRETEAGDVIVLQTMMWPDEIRQPDFTVEAGDVKPAEVKMAQMLIETLSGDFDASEFEDDYADAVNAVVKAKIEGGEVQRTETSAKTGGEVVDLLAALQRSVEAAKTSRGEAEPEKPASKKAPAKKAPAKKAAAKKATPAKKAAAKKTTTKKAAAKKAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL95</accession>
    <name>A0A0Q8VL95_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NAD-dependent deacetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_07095</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895279.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53847">
        <property type="protein sequence ID" value="KRC53847"/>
        <property type="gene ID" value="ASE19_07095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1264438at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003000">
        <property type="entry name" value="Sirtuin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026591">
        <property type="entry name" value="Sirtuin_cat_small_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026590">
        <property type="entry name" value="Ssirtuin_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02146">
        <property type="entry name" value="SIR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50305">
        <property type="entry name" value="SIRTUIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Deacetylase sirtuin-type" evidence="3">
        <location>
            <begin position="1"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="274" mass="28650" checksum="DD1FCCA1E1573B6C" modified="2016-01-20" version="1">MTLVDTTDPALARCATGPLVVLTGAGLSTDSGIPDYRGPGAPARMPMTYQEFVSGPAAQQRYWARSHLGWSRMRRADPNAGHRAVAVLGADLVITQNVDGLHEAAGTPHTVALHGRISDVVCLGCRRTTARAALQQRLEEANPGWAAAHADVAVRPDGDVDLEDTAGFVVPACEDCGGALKPDVVFFGENVPKPRVERCYAAVDALAGTGGSLLVAGSSLTVMSGLRFVRRAAHRGTPVVIVNRGTTRGDELATHKVDAGTSEWLTALAGLRAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLD8</accession>
    <name>A0A0Q8VLD8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-ketoacyl-ACP reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07290</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895311.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53879">
        <property type="protein sequence ID" value="KRC53879"/>
        <property type="gene ID" value="ASE19_07290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="256" mass="26218" checksum="C68B86B103ED7058" modified="2016-01-20" version="1">MFTSLAGRSVVVTGGSKGIGRGIATVFARAGARVLVTGRDEESLADACAKIGGETSYVIADVSRREDCDRMATTALERHGGIDVLCANAGIFPAARIDAMTADDLTAVMATNLNGTVFAVQACLDALTASGRGRVVVTSSITGPHTGYPGWSHYGASKAAQLGFVRTAALELAPRAITINAVLPGNIATEGLDGLGEDYLTAMAASVPQKRLGGVADIGNAALFFATEEASYITGQTLIVDGGQILPESLQALEEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLI3</accession>
    <name>A0A0Q8VLI3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Translation initiation factor IF-1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">infA</name>
        <name evidence="5" type="ORF">ASE19_06455</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Component of the 30S ribosomal translation pre-initiation complex which assembles on the 30S ribosome in the order IF-2 and IF-3, IF-1 and N-formylmethionyl-tRNA(fMet); mRNA recruitment can occur at any time during PIC assembly.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the IF-1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_028656368.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55069">
        <property type="protein sequence ID" value="KRC55069"/>
        <property type="gene ID" value="ASE19_06455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2066663at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04451">
        <property type="entry name" value="S1_IF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00075">
        <property type="entry name" value="IF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006196">
        <property type="entry name" value="RNA-binding_domain_S1_IF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004368">
        <property type="entry name" value="TIF_IF1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33370">
        <property type="entry name" value="PTHR33370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01176">
        <property type="entry name" value="eIF-1a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00008">
        <property type="entry name" value="infA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50832">
        <property type="entry name" value="S1_IF1_TYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2 3" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="2 3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="S1-like" evidence="4">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC55069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="73" mass="8412" checksum="A951D45C1F3A088C" modified="2016-01-20" version="1">MAKKEGVIEMEGSVVEALPNAMFRVELSNGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYRYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLZ5</accession>
    <name>A0A0Q8VLZ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_05880</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894390.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55153">
        <property type="protein sequence ID" value="KRC55153"/>
        <property type="gene ID" value="ASE19_05880"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1654295at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001034">
        <property type="entry name" value="DeoR_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013196">
        <property type="entry name" value="HTH_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028349">
        <property type="entry name" value="PafC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026881">
        <property type="entry name" value="WYL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08279">
        <property type="entry name" value="HTH_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13280">
        <property type="entry name" value="WYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016838">
        <property type="entry name" value="PafC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51000">
        <property type="entry name" value="HTH_DEOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH deoR-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="195"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC55153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="313" mass="34105" checksum="1F70CF4AFDF3BD30" modified="2016-01-20" version="1">MLRLLSLLQTHRFWTGGELADRLEVSERTLRRDVDRLRDLGYDVDAVRGAAGGYQLRAGGALAPLLLEDDEAVAVAVGLRAAANGGVPGFEDTTLQALTKVIALMPPRLRRRMGALQTQTEGMPWAGGPVLDPAVLTTLAQACRDDEVVSFAYTAADGSATVRRVEPHRLVNLGRRWYLAAYDRERQDWRSFRVDRVQGPPSTTGQRFGPREIPGGDAAAYVSQGLRTRPRQYQVVVTMDVPAATAEATVGRWASVEALGEAQCRMTMDTDSLDWPVLVLAGLDCDFAVEAPDELSTLLARLGDRFTAAARQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMA7</accession>
    <name>A0A0Q8VMA7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02585</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892747.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56729">
        <property type="protein sequence ID" value="KRC56729"/>
        <property type="gene ID" value="ASE19_02585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2033191at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="176"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="254"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="269"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="297" mass="31652" checksum="4C3CD5562B01CBEF" modified="2016-01-20" version="1">MPDLLEIADELYALPLAEFTPARDARAKALKGTPLAAPVKALRKPSTAAWVVNLLVRREPGQVDQLLNVGAALREAQQAMSAGELRTLTRQRRQVTAAVTTQARRLAAEEGLRVTEAVAEQVEATLTAAMVDAECGRAVRSGLLVTVLSTTGIEPMAEADLAGAVAVPDALGFAATPREAPVPGPPDLHVVPDPDRAEKARAAAAERLAEAEEEHEGAQAAYDETVAEVDRLEARQLQVQAEIDELRRALADLEEQSEGLEEELAEAEEVRDGAAADLRTASAERDSAQRALDRLSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMH2</accession>
    <name>A0A0Q8VMH2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribosome-binding factor A</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rbfA</name>
        <name evidence="3" type="ORF">ASE19_02960</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer. Binds 30S ribosomal subunits, but not 50S ribosomal subunits or 70S ribosomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RbfA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892812.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56793">
        <property type="protein sequence ID" value="KRC56793"/>
        <property type="gene ID" value="ASE19_02960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1971380at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030490">
        <property type="term" value="P:maturation of SSU-rRNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00003">
        <property type="entry name" value="RbfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000238">
        <property type="entry name" value="RbfA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023799">
        <property type="entry name" value="RbfA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020053">
        <property type="entry name" value="Ribosome-bd_factorA_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33515">
        <property type="entry name" value="PTHR33515"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02033">
        <property type="entry name" value="RBFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89919">
        <property type="entry name" value="SSF89919"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00082">
        <property type="entry name" value="rbfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01319">
        <property type="entry name" value="RBFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="116"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="16355" checksum="FCFF885B96A5342F" modified="2016-01-20" version="1">MASPRVRKIADRIQVIVAEMLERRIKDPRLGFVTVTEVRLTGDAQNATIYYTVLGEDADQQATAEALESAKGMLRSEVGKQLGMRHVPSLAFEFDGVPEIARHLDEVLAKAREADAAVAAAREGAQPAGEADPYKKPREAAPDLDEDVED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMH5</accession>
    <name>A0A0Q8VMH5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05430</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894183.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54898">
        <property type="protein sequence ID" value="KRC54898"/>
        <property type="gene ID" value="ASE19_05430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1582456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="297" mass="30920" checksum="C66FCA0948468288" modified="2016-01-20" version="1">MAIKDQVILITGGARGIGLETAKALAGKGAKLVLTDLDSPALEEAVAAIGADACEGVVADVTNLPAMEAAVATAVERFGRLDVVLANAGIASYGSVMAIDPAAFQRTLDINITGVFNTARAAIPELEKTKGYLLVVSSLAAFAAAPGLAAYNASKAGVEHLANALRLEVAHRGIAVGCAHMSWIDTPLVQDAKSDLPTFQELLSKLPPPLNKTTDVDSCVKAFVKGVDKRQRHVYCPGWVRGAGLNRNVINSAVGNIPILRLVPDLLPRMDAEVRALGRSTSARNVANDERKAAGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN38</accession>
    <name>A0A0Q8VN38_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-methyladenine DNA glycosylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22945</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892564.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58922">
        <property type="protein sequence ID" value="KRC58922"/>
        <property type="gene ID" value="ASE19_22945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1781735at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="322" mass="35176" checksum="4E8DA3DCEDE53362" modified="2016-01-20" version="1">MKAPDAERLWQPGRPVPVTAILRQQRRGGGDPTHRFDVEGRHWRASRTPEGPVALAVADQDGAGVIRAEAWGPGAAWALDQLPALLGDLDDWSGFDPRHPVLAEARRMHPHLRLGRTGRVLEAIVPAVIEQKVTGQEAFAGFRALVRRHGEPAPGPGPRVGLMVPPDAATLRAIPSWEWHRLHIDPARSRAVVTAARHADALERITLGSAVTGSETGSDTGDEAERRLRSLPGVGVWTSAEVRQRAFGDPDAVSFGDYHVAKDVGWALTGEPFDDAQLASYLEPWRGQRGRVPFLVGAAGLYRPRRGPRMAPRDHLQRDLFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP23</accession>
    <name>A0A0Q8VP23_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_22980</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892559.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58927">
        <property type="protein sequence ID" value="KRC58927"/>
        <property type="gene ID" value="ASE19_22980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360226" evidence="1">
        <location>
            <begin position="35"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="34"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="112"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC58927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="343" mass="36384" checksum="602BFAF7373B4FBB" modified="2016-01-20" version="1">MRTKHTLRAVGALVAVVAVLLTSGCSSVTGGGKMTVKAYLADSAGLFVGNDVGVLGVTVGEITAIEPAGDKVLVTMEVDSDQPIPADAGAVVVARSVATDRYVELTPVYRKGEKMADGTTIPIDKTQTPVDFDQVLSSLNEFATGIGGNKETTQAVQRFIDAGTKALQGRGPLLNQTIHSLADGVDGIASQREDVAATLKSLDVLLTTIASNESTARTFIQQVSRASKQLADERENFRSALRSLDSAVTEVAEFAVDNRQMIVDNVNGTSRLMKTLLSKQDRLEEVLRVMPLALENLKMIKGDRLPVRIDPLILDPLGGVLQTVCASLPLNLCDLIDGSQIGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQG4</accession>
    <name>A0A0Q8VQG4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00935</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896721.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59620">
        <property type="protein sequence ID" value="KRC59620"/>
        <property type="gene ID" value="ASE19_00935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="215" mass="22344" checksum="C45CDDBACEAC7CE3" modified="2016-01-20" version="1">MPSLTTTDDIAVLTLGDDENRFSTAWLDEVEAALDAVVAAGTPLVTVGAGKFYSNGLDLDWAMAHPDQFGDYVKRVERLLARVLALPVPTVAAVNGHAFGAGAMLAVAHDWRVMRADRGFFCLPEVDIQIPFSPGMAALLQAKLSPRAAVDAMTTGARFGGDDAAAAGIVDATAPEDGLLAAATARVAHLKGKSVETLEAIKATMFAGPIALLEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQJ4</accession>
    <name>A0A0Q8VQJ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01505</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59724">
        <property type="protein sequence ID" value="KRC59724"/>
        <property type="gene ID" value="ASE19_01505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="710313at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043426">
        <property type="entry name" value="MltB-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30163">
        <property type="entry name" value="PTHR30163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360275" evidence="2">
        <location>
            <begin position="31"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="283"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="303"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="371" mass="37973" checksum="DB20E337C60728F1" modified="2016-01-20" version="1">MTMNDNRSATARRIPVHRAVVLLPVALASAAWTVSVAGAGGVPVAAEPRPAPAPAAVADPVAVPDRAVEPPASVALPRTPRGVLPIISPVAAAAPIPATALAAYQRAAVVIGSADEDCHLAWPLVAAIGKVESDHGRTGGSVLGADGVARPSIVGLRLDGSRGTARISDTDAGRYDGDPAFDRAVGPMQFIPTTWGVVGVDADDDGVRNPQDVDDAALATAVYLCSGEGDLSTPAGQRQAVLRYNHSQRYADLVLSVTRSYAAASLSPLAAAGFGVPSGGLTAVPPEGRPATAHAARQPVRQARPEPAPPKPAAPKPSPQPAPTPAQPEPAAPVRQLLTRTQAVLACTVRGLTQLLQPTRFQNCVEELMNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQK3</accession>
    <name>A0A0Q8VQK3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_02060</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892657.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56640">
        <property type="protein sequence ID" value="KRC56640"/>
        <property type="gene ID" value="ASE19_02060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1529037at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="65"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="170"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="216"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="257"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="291"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="33876" checksum="5BD3262C3764BFDE" modified="2016-01-20" version="1">MGGLVFGAIYALIALGYTMVYGVLQLINFAHSEVFMYGTFAVAWVFILLHGTGSATWSLGEAVPVLLVALVAACALSAGVALLLERLAYRPLMNKNAPKLIALISAIGASFALAEAMGLRDRFAEVFGLDDNLADYVAPGKARDVYTNPVTIREHDILTIGGYTLSDVDLVIIVAALLMMVALDQFVRRTRFGRGIRAVAQDPESAALMGVNPTRVVQLTFLIGGLMAGAAATLYMMKVGVTRQNAGFILGVKAFTAAVMGGIGNLRGALLGGLILGVMENWGSALFGQNWKDVVAFVLLVLILLVRPSGLLGESLGKARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQK9</accession>
    <name>A0A0Q8VQK9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Indole-3-glycerol phosphate synthase</fullName>
            <shortName evidence="8">IGPS</shortName>
            <ecNumber evidence="8">4.1.1.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">trpC</name>
        <name evidence="10" type="ORF">ASE19_02165</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate + H(+) = (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + CO2 + H2O</text>
            <dbReference type="Rhea" id="RHEA:23476"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58613"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="EC" id="4.1.1.48"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 4/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the TrpC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.48" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892673.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56656">
        <property type="protein sequence ID" value="KRC56656"/>
        <property type="gene ID" value="ASE19_02165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1789381at2"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00043"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004425">
        <property type="term" value="F:indole-3-glycerol-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00331">
        <property type="entry name" value="IGPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00134_A">
        <property type="entry name" value="IGPS_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00134_B">
        <property type="entry name" value="IGPS_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045186">
        <property type="entry name" value="Indole-3-glycerol_P_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013798">
        <property type="entry name" value="Indole-3-glycerol_P_synth_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001468">
        <property type="entry name" value="Indole-3-GlycerolPSynthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22854">
        <property type="entry name" value="PTHR22854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00218">
        <property type="entry name" value="IGPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00614">
        <property type="entry name" value="IGPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 8" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="4 8" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="IGPS" evidence="9">
        <location>
            <begin position="5"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001633"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00218"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC56656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="262" mass="27798" checksum="735B856E29767212" modified="2016-01-20" version="1">MGTVLDEIVAGVREDLAHRQARVPESDLRAALADVAAPLDPMPHFRGAGSSVIAEVKRKSPSKGELADIPDPAALAREYAAGGAAAISVLTEQRRFNGSLDDLRAVRAAVDVPLLRKDFIVTEYQLLEARAAGADLALLIVASLPGDHLTRLHDYARELGLTVLVEVHDEPETERAIELGAELIGVNARNLKTLAVDDATFGRLAPMIPDDRVKVAESGISGPDDVRRFVAEGARAVLVGEALVKDGAPRDAVASMTGIEKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQT3</accession>
    <name>A0A0Q8VQT3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02915</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892803.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56785">
        <property type="protein sequence ID" value="KRC56785"/>
        <property type="gene ID" value="ASE19_02915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1938924at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="145"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="180"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="355" mass="38378" checksum="B8B60E1CBF9747F6" modified="2016-01-20" version="1">MNDTMKLEVRGEVDAFVAEVERRLADLTAEERDELVGGLRADLSERLADHDGPEPAEQVLGDPASYAVELRTAAGFAPVMAPRRERRPVALVVGELLDAARRTWVELVDKVPGSPRGFLESLQPAWWVLRAWVAWMVLQDMAHPYVSYGVGWALVLALLVVGSVQLGRGRGAIARVRGHAAARLVVIGLNVLAVCLLPPMVDKARWSTADQVLDDMYSEGAGEELPGLSYDGVQLTNLFPYDAQGRPLTGVQLFTADGRAVSVDDSLAEEDGSEDGIEEDGMSWVYPWLSNGSPRFNVFPLPVGPGDADLWERDPDAWSSPTPPRLPAFPFAAAPEVVLPDGGPAVEDSADVPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQW4</accession>
    <name>A0A0Q8VQW4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">ATP synthase subunit b</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">ATP synthase F(0) sector subunit b</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">ATPase subunit I</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">F-type ATPase subunit b</fullName>
            <shortName evidence="13">F-ATPase subunit b</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">atpF</name>
        <name evidence="16" type="ORF">ASE19_03215</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <reference evidence="16 17" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).</text>
    </comment>
    <comment type="function">
        <text evidence="11 13">F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12 13">F-type ATPases have 2 components, F(1) - the catalytic core - and F(0) - the membrane proton channel. F(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) has three main subunits: a(1), b(2) and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F(1) is attached to F(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 13">Cell membrane</location>
            <topology evidence="1 13">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="13 14">Belongs to the ATPase B chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892852.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56833">
        <property type="protein sequence ID" value="KRC56833"/>
        <property type="gene ID" value="ASE19_03215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1999641at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01398">
        <property type="entry name" value="ATP_synth_b_bprime"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028987">
        <property type="entry name" value="ATP_synth_B-like_membr_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002146">
        <property type="entry name" value="ATP_synth_b/b'su_bac/chlpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005864">
        <property type="entry name" value="ATP_synth_F0_bsu_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00430">
        <property type="entry name" value="ATP-synt_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81573">
        <property type="entry name" value="SSF81573"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01144">
        <property type="entry name" value="ATP_synt_b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 13" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="13" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 13 14" id="KW-0138">CF(0)</keyword>
    <keyword evidence="15" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6 13 14" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="8 13 14" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 13 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 13 14" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="22"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="15">
        <location>
            <begin position="62"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00025198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00025830"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01398"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KRC56833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="187" mass="20189" checksum="1A29976CBA87E266" modified="2016-01-20" version="1">MKSQLILAAAEAEEHNPLVPEWIEVVLALVVFAILFFAIKKFVVPNFETTFAERSAAIEGGIAAAATKQAEADAKLAELEQQLSEARHEAARIREEAREQGAAIVAEMREQAQAEATRIIEHGKTQIEAERQQAVTSLRAEVGSLATGLAGRIVGESLEDDARQSRVVERFLAELETANAADAGKDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQZ4</accession>
    <name>A0A0Q8VQZ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01500</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896616.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59723">
        <property type="protein sequence ID" value="KRC59723"/>
        <property type="gene ID" value="ASE19_01500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2210428at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360284" evidence="1">
        <location>
            <begin position="24"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="14824" checksum="473861667830DE75" modified="2016-01-20" version="1">MKSLGITLVVALLLIGGARPADALTTDQARIAATEAVGAGDGEAAARIIAANGLATRPAVLGRIIYDAGVLAVRADLGDEFSQAVATAFVDGGVSFATANSAFAHGSLLVIAGAPTDPQLLREIGPGGVAILRTELAYLGVTLPATSLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VS44</accession>
    <name>A0A0Q8VS44_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Anti-sigma factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03500</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892899.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56882">
        <property type="protein sequence ID" value="KRC56882"/>
        <property type="gene ID" value="ASE19_03500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2036019at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024020">
        <property type="entry name" value="Anit_sigma_mycothiol_RsrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014295">
        <property type="entry name" value="Anti-sigma"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027383">
        <property type="entry name" value="Znf_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13490">
        <property type="entry name" value="zf-HC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02949">
        <property type="entry name" value="anti_SigH_actin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03988">
        <property type="entry name" value="antisig_RsrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="zf-HC2" evidence="2">
        <location>
            <begin position="23"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="100" mass="11076" checksum="69A278E17059A024" modified="2016-01-20" version="1">MSTHTEGHEGHGHVHDDPSNADCADFLERIVRLIDNELEAGDCAVVRAHIDSCSPCLERYDLQRTVKAVVARSCGETAPEELRAKVRIQIQQIQVQISEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSJ2</accession>
    <name>A0A0Q8VSJ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">1-pyrroline-5-carboxylate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_23820</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="5">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893994.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57360">
        <property type="protein sequence ID" value="KRC57360"/>
        <property type="gene ID" value="ASE19_23820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="14333at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003842">
        <property type="term" value="F:1-pyrroline-5-carboxylate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004657">
        <property type="term" value="F:proline dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010133">
        <property type="term" value="P:proline catabolic process to glutamate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025703">
        <property type="entry name" value="Bifunct_PutA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029041">
        <property type="entry name" value="FAD-linked_oxidoreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002872">
        <property type="entry name" value="Proline_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01619">
        <property type="entry name" value="Pro_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000197">
        <property type="entry name" value="Bifunct_PutA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51730">
        <property type="entry name" value="SSF51730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="1 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="87"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="domain" description="Pro_dh" evidence="8">
        <location>
            <begin position="130"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="domain" description="Aldedh" evidence="7">
        <location>
            <begin position="510"/>
            <end position="924"/>
        </location>
    </feature>
    <feature type="active site" evidence="2 3">
        <location>
            <position position="712"/>
        </location>
    </feature>
    <feature type="active site" evidence="2 4">
        <location>
            <position position="746"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000197-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC57360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1142" mass="122648" checksum="77F6E067C68E08DA" modified="2016-01-20" version="1">MTQQSVDTSVLTDVEALVRQWLDEAATQPVAPAARRLADVLRDPAGLDFTVGFVDKVIRPEDLAVAAANLQQLARTAPRFLPWHLRLLVKIGAVLSVVAPGIVIPIARRALRRMVGHLLVDATDARLGRSIARIRERGVDLNINLLGEAVLGEGEAGRRLEGTQRLLARPDVDYVSIKVSATVPPHNPWAFDEAVAHIEQSLLPLFTLAAEAPTPKFINLDMEEYRDLELTIAVFTRLLDRPELEKLEAGIVLQAYLPDALSAMIRLQEWAAARRTRGGAGIKVRLVKGANLPMEHVEASLHDWPVATWSTKQESDTNYKRVLDYALRPEHVANVRLGVAGHNLFDIAFAWTLAGRRGVRDRIEFEMLLGMAEGQAEAVRRTVGGLLLYVPVVHPKDFDVAIAYLVRRLEEGASQDNFMSAVFDLHDDQRLYDREKQRFAASLAALDDTVPLPNRRQDRATGDPFAAVGTPGGFANTPDTDPALPANRAWGRAITQRVATTTAGADLVAEHTVLDAGVLDGVIATAVAAGTTWAALTGAERAAVLRRAAGTLEAARAELLEVMAAECGKTLDQGDPEVSEAIDFANYYALLAEQLDAVDGAQHRAVGLTVVTPPWNFPVAIPAGSVLSALAAGSPVVVKPATQAQRSGSVMVQALWDAGVPRDVLQLVHLEENDLGRRLVADPRVGRLILTGAFETASLFRGFRPDLPLLAETSGKNAIVVTPHADLDLAVKDLVTSAFGHAGQKCSAASLGILVGSVATSRRFLTQLVDAVTSLKVGYPSDPTVQMGPVIEPAQGKVLRALTELAPGESWLVEPRRLDDTGRLWSPGVKTGVRRGSEFHLTEYFGPVLGLIAADDLDEAIAIQNQVDYGLTAGLHSLDRGEIERWIDRVEAGNAYVNRTTVGAIVRRQPFGGWKKSAVGAGSKAGGPSYLIGLSDWAPSPATAVAPLGTTARGLLDAARKLSLAEDRIAFLERAFGSDALAWRDELGVARDVSGLMAEKNVLRHLPIPVTVRDERGDTADLLRVAGAGVLVGSEVTVSTPAPLEAAVTQLLERLGVRVRVDDDAAWQQVLRTQPPARVRLLGGSRAAFAEQSEGRADIALHAQPVLEAGRIELMTFLREQAVAVTAHRFGSPTPLAEGLFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VT91</accession>
    <name>A0A0Q8VT91_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23860</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893996.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57362">
        <property type="protein sequence ID" value="KRC57362"/>
        <property type="gene ID" value="ASE19_23860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2074294at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="66" mass="7403" checksum="53086C0678347D01" modified="2016-01-20" version="1">MEVHHDAMPEEASMFTHDCPSCGRRELIFNDQVTALENHLDGFLITFTCWCGATGTHLEERIVPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VU44</accession>
    <name>A0A0Q8VU44_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Aminopeptidase N</fullName>
            <ecNumber evidence="3">3.4.11.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_01915</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Release of an N-terminal amino acid, Xaa-|-Yaa- from a peptide, amide or arylamide. Xaa is preferably Ala, but may be most amino acids including Pro (slow action). When a terminal hydrophobic residue is followed by a prolyl residue, the two may be released as an intact Xaa-Pro dipeptide.</text>
            <dbReference type="EC" id="3.4.11.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="11">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase M1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.2" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892633.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56615">
        <property type="protein sequence ID" value="KRC56615"/>
        <property type="gene ID" value="ASE19_01915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="771837at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09599">
        <property type="entry name" value="M1_LTA4H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.320">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045357">
        <property type="entry name" value="Aminopeptidase_N-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042097">
        <property type="entry name" value="Aminopeptidase_N-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038502">
        <property type="entry name" value="M1_LTA-4_hydro/amino_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034015">
        <property type="entry name" value="M1_LTA4H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001930">
        <property type="entry name" value="Peptidase_M1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015211">
        <property type="entry name" value="Peptidase_M1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014782">
        <property type="entry name" value="Peptidase_M1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027268">
        <property type="entry name" value="Peptidase_M4/M1_CTD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45726">
        <property type="entry name" value="PTHR45726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09127">
        <property type="entry name" value="Leuk-A4-hydro_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01433">
        <property type="entry name" value="Peptidase_M1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17900">
        <property type="entry name" value="Peptidase_M1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00756">
        <property type="entry name" value="ALADIPTASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01263">
        <property type="entry name" value="Leuk-A4-hydro_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="SSF48371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63737">
        <property type="entry name" value="SSF63737"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="5" id="KW-0645">Protease</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Leuk-A4-hydro_C" evidence="12">
        <location>
            <begin position="450"/>
            <end position="592"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="10">
        <location>
            <position position="371"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="285"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="289"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="308"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012564"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00015611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR634015-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR634015-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM01263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC56615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="593" mass="65042" checksum="F5B46C75B5DC6B31" modified="2016-01-20" version="1">MTTSITDPHSRSRPNEVVVRHLGLDLDVDFATRTVSGSATLDLEHLAADATRLVLDTWQLDIASVKGADGADLPFELGTPDPVLGSALTIEVGAADRVVVHYATSPEARAMQWLEPQQTASGKPFLFTQAQPILARTWIPCQDSPGVRTTYDATVRVPADLLALMSAENPVERSADGSYRFSMPQPVPSYLVALAVGDLEFRPLGDRSGVYAEPSVVDGAAWEFADTEPMIAAAERLYGPYRWGRYDILVLPPSFPYGGMENPRLTFATPTILAGDRSLVTLIAHELAHSWSGNLVTNATWNDIWLNEGFTVYFETRIDEEMYGEAYTHMLLRLGRQDLDRAVADEVPRDTWLELDMSSRDPDDGPTKIPYEKGSLFLRLIEAKVGRERFDAFLRAYFDRFAFGSMDTATFLAYLSSELLDPAGVTFDDLQLEAWVHGPGVPSNAPEFASDAFDRVDAQAAALVAGGDVAALDTDGWVSQQWVHFVRALPESVGFPTLAAVDAQFGFSTSGNIEIATAWLELAVASGYVNASPAVDRALADFLTRHGRALYIRRVYERLAATEQGRQRAREIYATARASYHPVSQGVIDRILG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUR7</accession>
    <name>A0A0Q8VUR7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Small ribosomal subunit biogenesis GTPase RsgA</fullName>
            <ecNumber evidence="3">3.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rsgA</name>
        <name evidence="7" type="ORF">ASE19_03530</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Monomer. Associates with 30S ribosomal subunit, binds 16S rRNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.-" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892904.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56887">
        <property type="protein sequence ID" value="KRC56887"/>
        <property type="gene ID" value="ASE19_03530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="908180at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01854">
        <property type="entry name" value="YjeQ_EngC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01820">
        <property type="entry name" value="GTPase_RsgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030378">
        <property type="entry name" value="G_CP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004881">
        <property type="entry name" value="Ribosome_biogen_GTPase_RsgA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010914">
        <property type="entry name" value="RsgA_GTPase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32120">
        <property type="entry name" value="PTHR32120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03193">
        <property type="entry name" value="RsgA_GTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00157">
        <property type="entry name" value="TIGR00157"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50936">
        <property type="entry name" value="ENGC_GTPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51721">
        <property type="entry name" value="G_CP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CP-type G" evidence="6">
        <location>
            <begin position="106"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="domain" description="ENGC_GTPASE" evidence="5">
        <location>
            <begin position="115"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="155"/>
            <end position="158"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="206"/>
            <end position="214"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="289"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="293"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="295"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="302"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51721"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="333" mass="36456" checksum="AC51EBAC91C4C792" modified="2016-01-20" version="1">MGRYDENDVEHYERPRRRTRPRTKDRPAHDDAVEGLVITVDRGRFTLLIDGRTVTAMKARPLGRKGVVVGDRVRVVGDVSGADGSLARIVEVQERSSTLRRTADDDDPIERVIVANVTQLVIVTALADPEPRPRWIDRALVAAYDAGMTPLLCLTKADLEDPETLLSTYRSLGVPWEVTRRDADRTIIGLDALHDRLRGETSVLIGHSGVGKSTLVNALVPDARRETGHVNAVTGQGRHTSTSALMLPLGDGDGWIIDTPGIRSFGLAHVQPEHLIEAFPDLDEMTEDCPRGCTHGEDEPECGLDEAVAEGAADPERVASFRRLLAARSVTDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW93</accession>
    <name>A0A0Q8VW93_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ACT_7 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC59005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59005">
        <property type="protein sequence ID" value="KRC59005"/>
        <property type="gene ID" value="ASE19_23295"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004072">
        <property type="term" value="F:aspartate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027795">
        <property type="entry name" value="CASTOR_ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016540">
        <property type="entry name" value="UCP008459"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13840">
        <property type="entry name" value="ACT_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF008459">
        <property type="entry name" value="UCP008459"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT_7" evidence="1">
        <location>
            <begin position="58"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="129" mass="13752" checksum="8291EEFB1C1C0EE0" modified="2016-01-20" version="1">MFSLARYPETLAVVRLGPGAEIPMWAESSSVFSITATATETSLVCAGRSVPKKVRHEKPLTAFEVAGPLDFGLTGVLVTLLTPLAEEGISVFPLSTFDTDWILVPTGDADRAEEAWRRSGHTVAPAVPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM70</accession>
    <name>A0A0Q8UM70_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fatty acid-binding protein DegV</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19635</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895867.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46091">
        <property type="protein sequence ID" value="KRC46091"/>
        <property type="gene ID" value="ASE19_19635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1288126at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003797">
        <property type="entry name" value="DegV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043168">
        <property type="entry name" value="DegV_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02645">
        <property type="entry name" value="DegV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00762">
        <property type="entry name" value="DegV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51482">
        <property type="entry name" value="DEGV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="29410" checksum="6BB334DE9A26EC19" modified="2016-01-20" version="1">MPRSVALVTDSTAHLQAGVAESAGVTVVPLQVVIDDEVHDEGSEAATPERVAAALREKRAVSTSRPAPAVFSELYERLADEGASEIVSVHLSAEVSGTFESALVASRTAPVPVTCVDTRQVGVAIGYAVESAAAVLAAGGTTAEAAVAAKARSASATSLFYVNTLEYLRRGGRVGAAAAVFGGVLAVKPLLGIVDGVIAPRAKVRTAAKAIAQLEAMALEAAGEQQVEICVAHLAAEERALALAERLGNQLGDQLVPGRDGSPVRSVELGGVLGAHVGPGMLAICVAPVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMM2</accession>
    <name>A0A0Q8UMM2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Universal stress protein UspA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20600</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal stress protein A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896019.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46248">
        <property type="protein sequence ID" value="KRC46248"/>
        <property type="gene ID" value="ASE19_20600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2040681at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006015">
        <property type="entry name" value="Universal_stress_UspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01438">
        <property type="entry name" value="UNVRSLSTRESS"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="2"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="129" mass="13677" checksum="37C314B1C61D5E79" modified="2016-01-20" version="1">MSIVVAYSPDRFGQAALEHAAGLARKDRTRLVVVNATLGNSLVDDRFAHDADIAALQEELSAEGLEVVVRHDVVDDVADAVVAAADEEKAELIVVGIRHRTPVGKLLLGSVAQRIILDAHCPVLAVKPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMX7</accession>
    <name>A0A0Q8UMX7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L21</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rplU</name>
        <name evidence="6" type="ORF">ASE19_21155</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">This protein binds to 23S rRNA in the presence of protein L20.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 50S ribosomal subunit. Contacts protein L20.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the bacterial ribosomal protein bL21 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46346">
        <property type="protein sequence ID" value="KRC46346"/>
        <property type="gene ID" value="ASE19_21155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01363">
        <property type="entry name" value="Ribosomal_L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036164">
        <property type="entry name" value="L21-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028909">
        <property type="entry name" value="L21p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001787">
        <property type="entry name" value="Ribosomal_L21"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018258">
        <property type="entry name" value="Ribosomal_L21_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21349">
        <property type="entry name" value="PTHR21349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00829">
        <property type="entry name" value="Ribosomal_L21p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141091">
        <property type="entry name" value="SSF141091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00061">
        <property type="entry name" value="L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01169">
        <property type="entry name" value="RIBOSOMAL_L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="107" mass="11491" checksum="28BF6BD2A4BE91A0" modified="2016-01-20" version="1">MIKEPAVVYAIVRAGAKQEKVAVGDVIEIDKVSTPVGDTLTLPVVLAVDGETVTATGLDKATVTVEVLGATKGPKIIIQKYKNKTGYKKRQGHRQKYTQVKVTDISL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UND3</accession>
    <name>A0A0Q8UND3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PhoP family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20905</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896073.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46303">
        <property type="protein sequence ID" value="KRC46303"/>
        <property type="gene ID" value="ASE19_20905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1808078at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="108" mass="12417" checksum="6B363A0C19E6DAD2" modified="2016-01-20" version="1">MIEVQDVRVDPSTRRAWRGDREILLSRKEFDLVHALIARAGTVVSREELMRDVWGVTFWTSSKTIDVHLGWVRRKLGDDTRQPRLITTIRGQGLRFESGEPADLTDTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UND7</accession>
    <name>A0A0Q8UND7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22085</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896277.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46507">
        <property type="protein sequence ID" value="KRC46507"/>
        <property type="gene ID" value="ASE19_22085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1793376at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006083">
        <property type="entry name" value="PRK/URK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00485">
        <property type="entry name" value="PRK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PRK" evidence="2">
        <location>
            <begin position="5"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="209" mass="22546" checksum="0966E14D8510042F" modified="2016-01-20" version="1">MTARVIVLAGPSGSGKSRLAERLGRAHGWPTLRLDDFYRDGDEPGLPRITEGANAGLVDWDHPGSWHQDDAMAALRTLCATGAADIPVYSISESRRTGSQHLDLGGATRFCAEGIFAAEIVAECRAQGLLAAAYCITQHPAVTFWRRLTRDLREHRKPPPVLVRRGLALARAQRQVVRRAVAAGCRVATGDRAFTELGTSTEDDHAVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU55</accession>
    <name>A0A0Q8UU55_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cobyric acid synthase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">cobQ</name>
        <name evidence="7" type="ORF">ASE19_17385</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 4">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the CobB/CobQ family. CobQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917990.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48710">
        <property type="protein sequence ID" value="KRC48710"/>
        <property type="gene ID" value="ASE19_17385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="744477at2"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015420">
        <property type="term" value="F:ABC-type vitamin B12 transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01750">
        <property type="entry name" value="GATase1_CobQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00028">
        <property type="entry name" value="CobQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002586">
        <property type="entry name" value="CobQ/CobB/MinD/ParA_Nub-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033949">
        <property type="entry name" value="CobQ_GATase1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004459">
        <property type="entry name" value="CobQ_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011698">
        <property type="entry name" value="GATase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21343:SF1">
        <property type="entry name" value="PTHR21343:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01656">
        <property type="entry name" value="CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07685">
        <property type="entry name" value="GATase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00313">
        <property type="entry name" value="cobQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="3 4" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiA" evidence="5">
        <location>
            <begin position="5"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="domain" description="GATase_3" evidence="6">
        <location>
            <begin position="257"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="336"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC48710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="462" mass="49014" checksum="3E86AD5A0F75E610" modified="2016-01-20" version="1">MSGALLVAGMTSDAGKSVVTTGLCRAFARRGIRVAPYKAQNMSNNSMVVRGPDGEPGEIGRAQWVQAVAAGVEPEVAMNPVLLKPGSDRRSHVVLMGRPDGEVSARNWHDGRARLAATAFEAFDDLRGRFDLVVAEGAGSPAEINLRATDYVNMGLARHGDVPTIVVGDIDRGGWFAAAYGTLMLLDDADQALVKGYVVNKFRGDVDLLRPGLLDLEQRTGRPTYGVLPWHPDLWLDSEDALDLAGRRAEVGAGVRKVAGVRLPRISNFTDVDALGLEPGLDVEFVSDPARLADADLVVLPGTRATLADLAWLRERGLDAAVVRHAREGRPVLGICGGCQMLGARIEDPDGIEGTPGAAVDGLGLLDLTTRFGAEKRLVLHEPAGYEIHHGRITGATVEGNVSGTMVHGSLEDDATRATYLESALGITSAASFPAARAARLDLLGDLVEEHLDLDALLELAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUE2</accession>
    <name>A0A0Q8UUE2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17915</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893200.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48798">
        <property type="protein sequence ID" value="KRC48798"/>
        <property type="gene ID" value="ASE19_17915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1985755at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="15078" checksum="40B1C6BACFF0B239" modified="2016-01-20" version="1">MRSERAGDGQACLPLDLPAPAPAPAPVRRPRAARAEDRLRHRLSVDTLASRGLPAGTEVAVRAGGRRPLRGDLVLARSGEQAVVGVYDVRFGRPVLRWDRGGLWLGPTWDVVGVVTAAAPPLVAAPAFTDRTSADQPGVVPDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUW0</accession>
    <name>A0A0Q8UUW0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GDSL family lipase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22520</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46579">
        <property type="protein sequence ID" value="KRC46579"/>
        <property type="gene ID" value="ASE19_22520"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGNH_hydro" evidence="1">
        <location>
            <begin position="61"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="267" mass="27618" checksum="37F2E9DCD88095CA" modified="2016-01-20" version="1">MAVGVVLAGVGVTTGGGRELLRRQAAIARARIGKPLGEEALAADKTWKRKSYAGVPLHLLVLGDSIAAGLGAERPKDTLGARLARGLAKELQRPVSLSTAAVVGSETSALAGQLDGLPEGYRADVAVIVVGGNDVTHRVPTATSAAQLEEVVVRLLERGTEVVVGTCPDLGALRPVPQPLRSLGSRMSRQLAAAQAEVAVRNGAHAVSLASVVGPFFITNPDEMFSLDRFHPSALGYKRTAKALLPSVLLALGHSGRVPFGHHAPAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUW2</accession>
    <name>A0A0Q8UUW2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">HIT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_19015</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48987">
        <property type="protein sequence ID" value="KRC48987"/>
        <property type="gene ID" value="ASE19_19015"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01275">
        <property type="entry name" value="FHIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.428.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039383">
        <property type="entry name" value="FHIT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011146">
        <property type="entry name" value="HIT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036265">
        <property type="entry name" value="HIT-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01230">
        <property type="entry name" value="HIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54197">
        <property type="entry name" value="SSF54197"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51084">
        <property type="entry name" value="HIT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HIT" evidence="4">
        <location>
            <begin position="41"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Histidine triad motif" evidence="3">
        <location>
            <begin position="138"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-AMP-histidine intermediate" evidence="2">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR639383-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="179" mass="19554" checksum="DBE9F5470109EA41" modified="2016-01-20" version="1">MTPSVTDPDGLERLWTPHRMSYVRGEEDTDPTHADPRPACPFCRIRPDPATSTDDELVVARGETAYAVLNLYPYNPGHLMVLPYRHVADYTELDDKETDEVAALTKAALRAIRTVSQPHAFNVGLNLGGAAGGSLSGHLHQHVVPRWSGDSNFMTVVAGTKTLPQLLGDTRDLLAAAWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUW8</accession>
    <name>A0A0Q8UUW8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17820</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893185.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48783">
        <property type="protein sequence ID" value="KRC48783"/>
        <property type="gene ID" value="ASE19_17820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="13"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="198" mass="21427" checksum="4DE72A56AE99EC4F" modified="2016-01-20" version="1">MTETARRQRLSPDQRREQILVAAERLFAERPYVDVSTTELAAAAGVARGLLNHYFGDKRALYLDVVRRASLLPTLEDVPLPTGSLTERVDAAVHWFLGSITPERATYLTIGAAEGVGDDAEVRAILDEAHDLAAGRVLELVGGDPADAASRAAIRAFGELARGAIREWSRAGTLTRAQAHLLLRESLLVIVENVLPGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUZ8</accession>
    <name>A0A0Q8UUZ8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 8">Methionyl-tRNA formyltransferase</fullName>
            <ecNumber evidence="4 8">2.1.2.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">fmt</name>
        <name evidence="11" type="ORF">ASE19_19390</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 8">Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>(6S)-10-formyltetrahydrofolate + L-methionyl-tRNA(fMet) = (6S)-5,6,7,8-tetrahydrofolate + H(+) + N-formyl-L-methionyl-tRNA(fMet)</text>
            <dbReference type="Rhea" id="RHEA:24380"/>
            <dbReference type="Rhea" id="RHEA-COMP:9952"/>
            <dbReference type="Rhea" id="RHEA-COMP:9953"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:78530"/>
            <dbReference type="ChEBI" id="CHEBI:78844"/>
            <dbReference type="EC" id="2.1.2.9"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the Fmt family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.9" evidence="4 8"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893454.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49052">
        <property type="protein sequence ID" value="KRC49052"/>
        <property type="gene ID" value="ASE19_19390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2009156at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004479">
        <property type="term" value="F:methionyl-tRNA formyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08646">
        <property type="entry name" value="FMT_core_Met-tRNA-FMT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd08704">
        <property type="entry name" value="Met_tRNA_FMT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00182">
        <property type="entry name" value="Formyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005794">
        <property type="entry name" value="Fmt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005793">
        <property type="entry name" value="Formyl_trans_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002376">
        <property type="entry name" value="Formyl_transf_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036477">
        <property type="entry name" value="Formyl_transf_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011034">
        <property type="entry name" value="Formyl_transferase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044135">
        <property type="entry name" value="Met-tRNA-FMT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041711">
        <property type="entry name" value="Met-tRNA-FMT_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02911">
        <property type="entry name" value="Formyl_trans_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00551">
        <property type="entry name" value="Formyl_trans_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50486">
        <property type="entry name" value="SSF50486"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53328">
        <property type="entry name" value="SSF53328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00460">
        <property type="entry name" value="fmt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Formyl_trans_N" evidence="9">
        <location>
            <begin position="1"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="Formyl_trans_C" evidence="10">
        <location>
            <begin position="203"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="region of interest" description="Tetrahydrofolate (THF) binding" evidence="8">
        <location>
            <begin position="109"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00016014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC49052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="308" mass="32542" checksum="9F6AC1BA31A08511" modified="2016-01-20" version="1">MRVVFAGTPEVAVPALDAIAASPHELVGVVTRPDAPAGRGRKLTPSPVAQRAEELGVPVLKPVHPRDPEFQEALRALEPDCCPVVAYGALIPRSALDIPTHGWVNLHFSILPAWRGAAPVQHSLWAGDEFTGATTFRIVEALDAGPVFGVMTERIRPTDTAGDLLARLAEGGSSLLVATLDGIADGALEAREQPEEGISLAPKISVEDARVDWKEPAVGVDRRIRACTPGPGAWTTLDDERVKLGAVTIEEGVSDLPPGAIRVGKNHVLVGTSTDAVRLGEVKAFGKKQMGAADWARGVRLPDTATFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWN6</accession>
    <name>A0A0Q8UWN6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Stage II sporulation E family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21085</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896104.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46333">
        <property type="protein sequence ID" value="KRC46333"/>
        <property type="gene ID" value="ASE19_21085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1635706at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07228">
        <property type="entry name" value="SpoIIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="domain" description="PPM-type phosphatase" evidence="2">
        <location>
            <begin position="123"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="346" mass="37176" checksum="899D8C76D6201867" modified="2016-01-20" version="1">MRRWLHGDRATTLVLGLVSALVLVGIAVRPDDIPINGAFLPLVVAILMLGNRALPWFATYMLGVLTVAVLLQDSWMPRTVVSVTVMYLLTLAVLVVTRRRTGGLNVARMRGESMLVDLRDRILAQGEIPTLPEPWLVESALSSAGGSGFAGDFFVATPSEHGRRIELVVVDVSGKGEAAGTRALQLSGAMGGLVGALTPDRFLPAANEYLLQRAWEEGFATAVHVSVDLGTGVFELRSAGHPPAVQRHAGSGRWEVLQAEGPVLGIVDDVAYDAYRGRLDPGDSLLLYTDGMVEEPRRDIELGIDHMMGAAESLLRGSWDGLAQRLVGVVGSPDDDRALLLVHRRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXL9</accession>
    <name>A0A0Q8UXL9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_15515</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893496.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50027">
        <property type="protein sequence ID" value="KRC50027"/>
        <property type="gene ID" value="ASE19_15515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="7"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="131"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="238"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC50027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="401" mass="43783" checksum="0004C654B9FF1B12" modified="2016-01-20" version="1">MDLTESADDRAFREEVRTWLADHLTGEWAALRGLGGPGREHEAHDERLAWNRHLAEHGWTAVGWPTEHGGRGLSLWQQVIFHEEYARADAPAGVNHLGEQLLGPTLIAFGTEEQKARFLPEIVAVRELWAQGYSEPNAGSDLANVQTRARRDESTGEWVIDGQKVWTSLAHLSDWCFVVARTEAGSTRHHGLSFLLVPLDQEGVEVRPIEQLTGGSEFNEVFFTGARTAGDLVVGEPGRGWGVAMGLLGFERGVSTLGQTVGFARELDTVIDRAKANGSIDDPVVRDRLARMKSELAVIRSFALRSLALVEGGQDSAAGNGAGSIFKLAWANWHRDLGEVAMDVAGADGLLARPTGGYDLDDHQRLFLFSRADTLYGGSDEVQKNILAERVLGLPREPRGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXN9</accession>
    <name>A0A0Q8UXN9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15440</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50014">
        <property type="protein sequence ID" value="KRC50014"/>
        <property type="gene ID" value="ASE19_15440"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="64" mass="6829" checksum="EBBFE7646A82B890" modified="2016-01-20" version="1" fragment="single">ADGRLAWTRFEALVEGKVAAADPELAEAKETAAATDRFARLSRVNRHGIATLTIRDHAATILAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXU6</accession>
    <name>A0A0Q8UXU6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_15915</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC-2 integral membrane protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50102">
        <property type="protein sequence ID" value="KRC50102"/>
        <property type="gene ID" value="ASE19_15915"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC_2_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006648">
        <property type="entry name" value="DrrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="36"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="74"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="117"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="146"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="185"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="235"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="domain" description="ABC2_membrane" evidence="8">
        <location>
            <begin position="27"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC50102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="256" mass="25753" checksum="4801023BBD9A6087" modified="2016-01-20" version="1">MSGTFAPAPGGAPVLRQLVTQAGMEARLLLRNGEQLLIAVVIPVIVLIGAVRGADRVGLDLDGRPIDVLTPGVLALAVMSTAFTSLAIATGFERRYGVLKRLGTAPLSRTTLLGGKVAALLLVEVIQFAVIGGVGLALGWDGPSGVAGVLCAVVAALLGTAAFAALGMLLAGTLRAEATLAAANLVYLLLLAGGAVILPASAYGGLGDVVRWLPSGALGEAMRAACDGAIAGRDLVVLLAWAALGSVLTARTFKWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY08</accession>
    <name>A0A0Q8UY08_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TetR_C_16 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893489.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50020">
        <property type="protein sequence ID" value="KRC50020"/>
        <property type="gene ID" value="ASE19_15480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2064099at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041678">
        <property type="entry name" value="TetR_C_16"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17920">
        <property type="entry name" value="TetR_C_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TetR_C_16" evidence="1">
        <location>
            <begin position="8"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="18246" checksum="9F06A89E328B58E7" modified="2016-01-20" version="1">MHSLDPTEDFAIRLLRRFLLLCEHPRTRQRMLQMVRQSTRMGPGAPRLYGWINKAVLNPRFQPVLERRAMSAMKAELVASQLIGLAMTRYVLKIEPLASAPVDEVVRMAAPAIAAALQGEDAFDHVVRPEQDEPEPPRRGLRALRLPGVGAVRRTIAPGRGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY96</accession>
    <name>A0A0Q8UY96_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutathionylspermidine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19580</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895858.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46082">
        <property type="protein sequence ID" value="KRC46082"/>
        <property type="gene ID" value="ASE19_19580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="692145at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005494">
        <property type="entry name" value="GSPS_pre-ATP-grasp-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03738">
        <property type="entry name" value="GSP_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GSP_synth" evidence="1">
        <location>
            <begin position="12"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="408" mass="46541" checksum="767A9D517A60B71E" modified="2016-01-20" version="1">MWRHATTPRPGWRETVARQGLVFPMTPLPDGSGEVVYWNESAWYEFTIGEVERLEAATDELYRMCLHAGAVMAERFSDADLLLPRGTMDLVRESLRTEQPAAHARFDLVYDGELPPKMLEINGDTPTGLVETAVAQWSWLEDVFPDRDQWNSVHDRLVRWWQEQDARGLFPDHEVHFFHSGTDTSGEEEMTATYLRDTAAMAGLRTFGHVIEQVGWDDAPEARRFVDVEDVPVRAAYKLYPWEAMLAEEFGTHLLEHRERQPVRWIEPVWKLMLSTKAILPVLWELYPDHPNLLPAYLGHPGDLTEWVAKPLQGREGDNIWVHTRDGDERHPGHYDGQTLVYQQWNPAPDFDGNRAVLGSWVVGGVAAGCIVRESDGPVTDYFSRVVPHAITDAARPSDAQVQAWLDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYT7</accession>
    <name>A0A0Q8UYT7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16915</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893745.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50276">
        <property type="protein sequence ID" value="KRC50276"/>
        <property type="gene ID" value="ASE19_16915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1707924at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="169" mass="18026" checksum="91DF16335BB6CDD0" modified="2016-01-20" version="1">MTTTRRIVIIRHAKAEPYGPTDVERVLADRGRVEGRMLGEWLAAEGITPDAAWVSYAARTRETWEVVAAGAGWTLEPVYDGALYGTDEDGVLDLLQGAADDVSTAVVVGHNPTMGMLVQLLDDGEGEATGSVALGSFPTSTAAVFEYDGDWADLSATSARLRAFHVARD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYX5</accession>
    <name>A0A0Q8UYX5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">XRE family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893777.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50308">
        <property type="protein sequence ID" value="KRC50308"/>
        <property type="gene ID" value="ASE19_17090"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="17"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="78" mass="8681" checksum="F217AA5A5CEE1411" modified="2016-01-20" version="1">MPKTPVPQAALTLGERVRERRHELGLSQERLAEGTALHWSFIGRIERGQANLTLRNILRLADALQVDAGDLLRGLQAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ78</accession>
    <name>A0A0Q8UZ78_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20085</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895942.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46167">
        <property type="protein sequence ID" value="KRC46167"/>
        <property type="gene ID" value="ASE19_20085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1469203at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="122" mass="12840" checksum="92FB88AB196D4BA2" modified="2016-01-20" version="1">MRSTLVVDGANVVGARPDGWWKDRAGAALRLHDQLLVADVPYDVVVLVLEGQAKGGVRAGKDAHVRTVHAAKDGDATIVAEAAKAVEQGHRTVVVTADRALDARVHGVGATTLSPTWLLSYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZN4</accession>
    <name>A0A0Q8UZN4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">NAD-dependent succinate-semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_18505</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893843.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49113">
        <property type="protein sequence ID" value="KRC49113"/>
        <property type="gene ID" value="ASE19_18505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="384611at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="4">
        <location>
            <begin position="11"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC49113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="484" mass="50365" checksum="8DC9D9614CB0F8B1" modified="2016-01-20" version="1">MPSGLLIGGGWRAASDGATLAVVNPAAESVIARVADGTARDGVAAARAAARAQEGWSSTAPRDRSDILHRSFVAMMERQEELALVITLEMGKPLAEARGEVAYAAEFFRWFAEEAVRIDGGYARRPDGLAKTIVLRQPVGPCLLITPWNFPLAMGARKIGPAVAAGCTMVLKPAPQTPLSSLLLASILQEAGLPDGVLNVVTTSRASEVVGPILTGGEIRKLSFTGSTQVGKILLGQAAEKVVRSSLELGGNAPFLVMADADLDVAVEAAVQAKMRNMGEACTAANRFYAHAAISEEFSTRLADRLSAMQVGDGLVDGVQVGPMIDAAGRDKVLGLMADAVGRGARIVAGGSAPEGPGFFVEPTVLVDVPADSELLATEIFGPVAAIQTFETVEEVMRAANGTEWGLAGYVMTQDVDLAFEISEKLEVGMVGLNAGVVSDPSAPFGGIKQSGLGREGGRVGIDEFLDTKYISMPVREGARLPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0C0</accession>
    <name>A0A0Q8V0C0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF262 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17940</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893831.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48803">
        <property type="protein sequence ID" value="KRC48803"/>
        <property type="gene ID" value="ASE19_17940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1779628at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004919">
        <property type="entry name" value="DUF262"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03235">
        <property type="entry name" value="DUF262"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF262" evidence="1">
        <location>
            <begin position="19"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="604" mass="68742" checksum="92A15CF5BC5C8932" modified="2016-01-20" version="1">MKETQMTDDAGAFEGREVGKISGSFFVPRYQRGYRWTGLEVARLLQDINDSGTVTYYLQPIVVKAMVDGRWELIDGQQRLTTLALIVRYFKKYVPMADVKYTIEYETRPQSEKFLLEPDEATANENIDFFHMYEAWKAIGEWLDGQEDPSTSAFEIYSALSRRVKVIWYEAPAETEAVKLFTDLNTGRIPLTDAELVKALLLSRSREMDGTDRALSVAAEWDAIERDLRDPELWAFLTARSDEEATHISLLLDTIADQISDRIRASDGLKPLRGRDRPSFHTFETLRRAVVEAGELKGVLCDHEVKDGEGAAHLWDHVVDLHSLVAGWFEERETFHKIGYLTACRLPFEIVLGLAESATRSQFIDRLDTMIAAGSGVGLRMTAQDLRSLAYGEDDARIKRALLLMNVEAVRKITGSTERFSFHTYAARTWSLEHIHAQNSDGLNTAEQWTTWLRQHRDALSGMPDLTPGEVDDLTNRIDEALQGITLEKFQVLETELRAIYAPPETAGVPEEHALSNLALLERNDNSVLNNAVFEVKRQRVLELDRAGSYIPVCTRNVFLKYYTDRHVQQLHFWSLQDRLAYVEAVERELAPYLLPSTQTELAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0M6</accession>
    <name>A0A0Q8V0M6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">N6_Mtase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18765</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893349.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48947">
        <property type="protein sequence ID" value="KRC48947"/>
        <property type="gene ID" value="ASE19_18765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1178320at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003356">
        <property type="entry name" value="DNA_methylase_A-5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02384">
        <property type="entry name" value="N6_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N6_Mtase" evidence="2">
        <location>
            <begin position="18"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="495" mass="52175" checksum="ED0A3F7DB6D1B387" modified="2016-01-20" version="1">MLGRDEHDERQRTAAAADAHEQALAGQRDERRRRGAFYTPPDLVAWVLDRALADLSPGATVLDPACGAGHFLVAAARRVGVRAVHGSDLDPDAVRIARERLAAEDPSVPADEIAERVVVADGLTAWEGRRFIAVVGNPPFLGQLRRRTSGQSEGSRRGLGAYTDTSAVFLHRALDLVVDGGVVALVQPLSVLAARDAGPVRAEVARRGAVTDLWCSPRPVFDGTPVLTCVPVVRIGAGPATDPDGWGTLAAPSFGIPDARLPSGTGTVGDLATCTADFRDQYYGLVPFVRDDPSGTPLVTSGLIDPAELRWGIAATRFARQQYDVPSVDLAALRSDGGLSGWADARLVPKLLVAAQGRVIEAVVDEQGAWLPSVPVLSVVPDDPADLWRLLALTLAPPVAAHAAARYLGTGLTPGSVKVSARQLAALPLPEDATAWAEGADLAREAQQAAGDGERADLLVATARAMSAAYRGPAEVLDWWVERVSRSPARSAARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V107</accession>
    <name>A0A0Q8V107_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18345</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893837.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49107">
        <property type="protein sequence ID" value="KRC49107"/>
        <property type="gene ID" value="ASE19_18345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="81"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC49107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="539" mass="58215" checksum="E8FBFC3ABF388A67" modified="2016-01-20" version="1">MLDVPYGTQVEGATWHSAVKAHVYVGRHLPAHLAPYSPGPHTLGRFVENTLNPDSPTPNPEPTDTLEPRQLQFEAADAIAERAAAGGRQFLLADEPGVGKTISAVLGATAVGDLRGARRVLVVADRPAAITIGHWCRTITALGDGGLEWVVITWDRLEKVKDHTWDVIIADEAHALRRTTTKRWKHWTRISGHGKPHDKAPFVIATTATPGHTPLELPYLAPAYAQVLGEPMRDWISATQPGADFAAALERHGVAVEHGRYGAAWTTDAARRAADLKLVRGWLADERPPAMLHRAAPWGPVPISGMPVALTPAERSAYEAEWGAFCREMDIARRGRNVAKGRAALLRFRQKAGLIRVDSTVAWIAQQVEAERQVACSVEFVATAADPIADRLRDSGIEVATIYGRDRFDVEAERLRFQTGAAKVCVFTTVASISLHAGETLPDGRQASTAPRVGVFHQARFSGIAGRQVTGRTHRDHQVSPWHIAYAEGTVEEQVGKVMVERIAAASDTVGSDTTGLADLAALLGADWLPATSLTEEGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1N5</accession>
    <name>A0A0Q8V1N5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gluconate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896480.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51413">
        <property type="protein sequence ID" value="KRC51413"/>
        <property type="gene ID" value="ASE19_15110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1585405at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015128">
        <property type="term" value="F:gluconate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003474">
        <property type="entry name" value="Glcn_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30354">
        <property type="entry name" value="PTHR30354"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02447">
        <property type="entry name" value="GntP_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002746">
        <property type="entry name" value="Gluconate_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00791">
        <property type="entry name" value="gntP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="22"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="156"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="194"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="241"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="282"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="315"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="355"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="396"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="433"/>
            <end position="457"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="458" mass="46470" checksum="9FA703707E46AB91" modified="2016-01-20" version="1">MSTHLVLAGTDLVQPVASEGRLVLAALLGIGVIVALIIGAKLHPFLALTAGALTVGVTAGVSVEVAIASFTTGFGSTAAGVGILIALGAMFGKLLADSGGADQIVDTIIGRAAPRALPWAMAVVGAIIGLPMFFEIGLVLLMPVIYLVARRSGQSLVTIGIPALAGLSAMHGLVPPHPGPLTAIDYLGADLGTTLALGVAIAIPTVIIAGPVFGLVGRYVTVEVPDRFEGQVDEDAANRPSFLVTIASVLLPVVLMMGKALADIFIDDATDPLRRTLDILGTPLIALLIAVVVGMFTLGAGMGRDGVAKSLESSLPGVAGILLIVAAGGGFKQSLVDTGIGTIVAERVADSNISVLLLAWFVAVLIRLATGSATVATVTASGLLAPLTDQLSSGEVSLMVLAIGAGSVFFSHVNDAGFWLVKEYFGMTVGQTLKTWSAMETLLSVTGLVFVMALNLVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4F7</accession>
    <name>A0A0Q8V4F7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893411.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49009">
        <property type="protein sequence ID" value="KRC49009"/>
        <property type="gene ID" value="ASE19_19140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1581636at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="12"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="239" mass="25150" checksum="37A869E76EC89409" modified="2016-01-20" version="1">MLIAAFPAGPWGTNCYVAATAPGAECVVIDPGKDAAGGVAEVVREHNLKPVAVLLTHGHIDHMWSVTPVAGAYDATAWIHPGDRHLLADPMAGISRESASMLLGGDHTFVEPDDVQELTDGAVLELAGLEFLVDHTPGHTSGSVTFRTPWDQPGGPDISEVMFSGDLLFQGSIGRTDLPGGDHATMLRSLATKVLPLRDDVVVLPGHGEQTSIGRERATNPFLLDLLDSGDTGRVTRGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5B3</accession>
    <name>A0A0Q8V5B3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09365</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52636">
        <property type="protein sequence ID" value="KRC52636"/>
        <property type="gene ID" value="ASE19_09365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1814691at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027961">
        <property type="entry name" value="DUF4442"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14539">
        <property type="entry name" value="DUF4442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="133" mass="14270" checksum="585A082BFEC66388" modified="2016-01-20" version="1">MIPIFEAMQLEVVEAGRNTVAARLPAAPNVNHFGTSYAGSLFSVAEVLGGVYASTSLVLEGAVPLVKQVTIDFLRPATTDVVARATLTDETIERVLAETAENGKSNFDLDTEVVDAEGTVVARTRGLYQLRRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5J2</accession>
    <name>A0A0Q8V5J2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">50S ribosomal protein L1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">rplA</name>
        <name evidence="11" type="ORF">ASE19_09770</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.</text>
    </comment>
    <comment type="function">
        <text evidence="9">Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 9 10">Belongs to the universal ribosomal protein uL1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894647.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52709">
        <property type="protein sequence ID" value="KRC52709"/>
        <property type="gene ID" value="ASE19_09770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1671455at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00403">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01318_B">
        <property type="entry name" value="Ribosomal_L1_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005878">
        <property type="entry name" value="Ribosom_L1_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002143">
        <property type="entry name" value="Ribosomal_L1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023674">
        <property type="entry name" value="Ribosomal_L1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028364">
        <property type="entry name" value="Ribosomal_L1/biogenesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016095">
        <property type="entry name" value="Ribosomal_L1_3-a/b-sand"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023673">
        <property type="entry name" value="Ribosomal_L1_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00687">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002155">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56808">
        <property type="entry name" value="SSF56808"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01169">
        <property type="entry name" value="rplA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01199">
        <property type="entry name" value="RIBOSOMAL_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 9" id="KW-0678">Repressor</keyword>
    <keyword evidence="8 9 10" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="7 9 10" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="6 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 9" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="5 9" id="KW-0810">Translation regulation</keyword>
    <keyword evidence="3 9" id="KW-0820">tRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01318"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC52709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="239" mass="25589" checksum="FF2B13B29F16AC15" modified="2016-01-20" version="1">MQRSKTYRAAAETFDKNELYAPLAAIKIAKTSSKKKFDETVDVVFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFAVADKAEAAREAGADFVGGDELIDKVAGGWTDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKVGTVTPDPAKAVSDIKGGKIEFRVDRHANLHFIIGKASFSEQALAENYAAALEEVLRLKPASSKGRYLKKVTVSTTMGPGVQVDPNRIKNVAVEDEATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5K6</accession>
    <name>A0A0Q8V5K6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L33</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpmG</name>
        <name evidence="5" type="ORF">ASE19_09820</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the bacterial ribosomal protein bL33 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_028654832.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52716">
        <property type="protein sequence ID" value="KRC52716"/>
        <property type="gene ID" value="ASE19_09820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2034291at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00294">
        <property type="entry name" value="Ribosomal_L33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038584">
        <property type="entry name" value="L33_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001705">
        <property type="entry name" value="Ribosomal_L33"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018264">
        <property type="entry name" value="Ribosomal_L33_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011332">
        <property type="entry name" value="Ribosomal_zn-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43168">
        <property type="entry name" value="PTHR43168"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00471">
        <property type="entry name" value="Ribosomal_L33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57829">
        <property type="entry name" value="SSF57829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01023">
        <property type="entry name" value="rpmG_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00582">
        <property type="entry name" value="RIBOSOMAL_L33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="56" mass="6661" checksum="9A3A1E2BA6713AC9" modified="2016-01-20" version="1">MASKSSDVRPKITLACVDCKERNYITKKNRRNDPDRIELSKFCPRCRKHTAHRETR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5W0</accession>
    <name>A0A0Q8V5W0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09925</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52730">
        <property type="protein sequence ID" value="KRC52730"/>
        <property type="gene ID" value="ASE19_09925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1277822at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="250" mass="27108" checksum="B7CA17573DD49DEC" modified="2016-01-20" version="1">MMELGEGDAMTVLDMPAAVDKFDAPLYTQSEASRFLGLSETTFRNWARGYRVVRAGREVVGIPVITAVAKEGARSPDIPFVGLAEGYALAAIRRSGVPLQRIRPALEVLAKEMGLPHALASDRLFTDGAEVLFDYAATADPSESAAVRELVVVRDGQRVFADAVESYLQRIVFGDDGFAQALPLPGFSRAEVVADVRRSFGQPIFSRGGARLEDVLSLFRAERDLSVVAEEFGIPRSDLEDVLATLLPVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5Z8</accession>
    <name>A0A0Q8V5Z8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894695.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52762">
        <property type="protein sequence ID" value="KRC52762"/>
        <property type="gene ID" value="ASE19_10110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1452500at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="228"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="259"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="293"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="319"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="389"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="430" mass="46653" checksum="7CFF5F8E2438A3A5" modified="2016-01-20" version="1">MSISAEATKQRFWRRLVPPTPMSRRLATQSVLFSTGEGAFNTGSAVFLTQVVGMSASRVGLALTIVNVAEFLMAYPAGRLVDRLGPKRVWSATTWGRAACFAVLPFVGSFEEYVAVGMFFALFGSAGHSSYQAYVVDVLPPKERVETQAYLYSALNLGFTLGAIIGGVALATDSLDVIRWSPLFAAVLMGFNGFWIARLPAAPHDLRVASGEARERPTGPGPLRNPGWVLVTFCLGVLWTNQTLLNVVIPLWLVEATDAPHVLLAWLFGTNTVLCIFLPAYTSKGVKDLRDALRYVWISTGFFVVSCLITLWTHSTVGLVTVLLVWLGHVTVTGAELFISGASWSFQAELMDPRRRGEYQGVADVSRAMGSMWAPALFTYLAMEQGEAGWLVIAAIVTGATVLTGPSLGMATRFRDRHFPVTPEPEPAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V609</accession>
    <name>A0A0Q8V609_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_10690</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894802.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52869">
        <property type="protein sequence ID" value="KRC52869"/>
        <property type="gene ID" value="ASE19_10690"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1932026at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000962">
        <property type="entry name" value="Znf_DskA_TraR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020458">
        <property type="entry name" value="Znf_DskA_TraR_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01258">
        <property type="entry name" value="zf-dskA_traR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01102">
        <property type="entry name" value="ZF_DKSA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51128">
        <property type="entry name" value="ZF_DKSA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="DksA C4-type" evidence="5">
        <location>
            <begin position="44"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="dksA C4-type" evidence="4">
        <location>
            <begin position="87"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="116" mass="12423" checksum="768E45929A1D53FF" modified="2016-01-20" version="1">MEQDDVRARLDAERDAALQRLADLSCDHDAIVAASRDTNADDEHDPEGATIAFERAQVDAVARLARHQLLELDAALARLAAGTYGACEACGLPISPERLDVRPAARTCIACAAARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6A7</accession>
    <name>A0A0Q8V6A7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 10">Adenylosuccinate synthetase</fullName>
            <shortName evidence="8">AMPSase</shortName>
            <shortName evidence="8">AdSS</shortName>
            <ecNumber evidence="8 10">6.3.4.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">IMP--aspartate ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">purA</name>
        <name evidence="11" type="ORF">ASE19_10370</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 10">
            <text>GTP + IMP + L-aspartate = GDP + 2 H(+) + N(6)-(1,2-dicarboxyethyl)-AMP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:15753"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57567"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="6.3.4.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8 10">Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1 8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8 10">Belongs to the adenylosuccinate synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.4" evidence="8 10"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894744.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52811">
        <property type="protein sequence ID" value="KRC52811"/>
        <property type="gene ID" value="ASE19_10370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="232152at2"/>
    <dbReference type="UniPathway" id="UPA00075">
        <property type="reaction ID" value="UER00335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004019">
        <property type="term" value="F:adenylosuccinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044208">
        <property type="term" value="P:'de novo' AMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd03108">
        <property type="entry name" value="AdSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.170.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00011">
        <property type="entry name" value="Adenylosucc_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018220">
        <property type="entry name" value="Adenylosuccin_syn_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033128">
        <property type="entry name" value="Adenylosuccin_syn_Lys_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042109">
        <property type="entry name" value="Adenylosuccinate_synth_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042110">
        <property type="entry name" value="Adenylosuccinate_synth_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042111">
        <property type="entry name" value="Adenylosuccinate_synth_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001114">
        <property type="entry name" value="Adenylosuccinate_synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11846">
        <property type="entry name" value="PTHR11846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00709">
        <property type="entry name" value="Adenylsucc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00788">
        <property type="entry name" value="Adenylsucc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00184">
        <property type="entry name" value="purA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01266">
        <property type="entry name" value="ADENYLOSUCCIN_SYN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00513">
        <property type="entry name" value="ADENYLOSUCCIN_SYN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8 10" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 8 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 8 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 8 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 8 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 8 10" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="IMP binding" evidence="8">
        <location>
            <begin position="13"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="8">
        <location>
            <begin position="38"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="298"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="13"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="12"/>
            <end position="18"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="40"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="238"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="302"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="304"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="330"/>
            <end position="332"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="412"/>
            <end position="414"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC52811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="427" mass="46347" checksum="FADB531A52B42151" modified="2016-01-20" version="1">MPAIVIVGAQWGDEGKGKATDHLGSQVDYVVKFNGGNNAGHTVVIGDEKYALHLLPSGILTAGCTPVIGNGVVVDIDVLFHEIDGLESRDIDTSALKLSANAHVIADYNRTIDKVTERFLGSRKIGTTGRGIGPTYADKMNRIGIRVQDLFDEKILAQKVEGALELKGQILTKIYNRRAPSVQQTVEELRGHAERLAPYVCDTGLLLNEALDRGDVVLMEAGQATLLDVDHGTYPFVTSSSAVSAGACTGTGIPPTRIDQVIAIAKAYTTRVGEGPFPTELHDENGEFLRKAGWEYGTTTGRPRRCGWMDTVITRYAARVNGVTDFVLTKLDTLTGLAELPVCVAYDVDGVRHDEMPVNQTDFHHAVPIYENLPGWTEDLSGCRSFEELPKAAQEYVEFVEARSGARISVVGVGPEREQAVVRHPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6A8</accession>
    <name>A0A0Q8V6A8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15310</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896514.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51449">
        <property type="protein sequence ID" value="KRC51449"/>
        <property type="gene ID" value="ASE19_15310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1818136at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="29"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="77"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="110"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="152"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="187"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="210"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="237" mass="24886" checksum="59EFF998B45C6FE1" modified="2016-01-20" version="1">MTTQTNLPPTALDQHGAQAEPTTYRPTRWALAGLLAGVTGFGMMVTSSMVNAVYDPDIQGDADKISERLGELVPQMLAFHTFTMVSAVLMVVFAAGLYRRLRATADRDSVLPLVAFSGVLITAIVMILGAGLDTEFIFAAGDDAMVVPESAAFYNHWIGTIPWCWGLLGLSGLTLFGAARNGGVPKWIGIVGLVGGGVTLLLGVSPLQYMAGMTGPIGLIVIALGFLAGDKVFRGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6D5</accession>
    <name>A0A0Q8V6D5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NrdH-redoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10240</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894721.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52788">
        <property type="protein sequence ID" value="KRC52788"/>
        <property type="gene ID" value="ASE19_10240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2001991at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008554">
        <property type="entry name" value="Glutaredoxin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05768">
        <property type="entry name" value="Glrx-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="82" mass="9205" checksum="2E492846F336CD43" modified="2016-01-20" version="1">MSGTTARVTLYGRPGCHLCDDARAVIEAVCAELGESYVEISIDDDPELGDRFAHEIPVTFVDGRQHDFWRVSPDRLRRALTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6P7</accession>
    <name>A0A0Q8V6P7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11810</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894998.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53068">
        <property type="protein sequence ID" value="KRC53068"/>
        <property type="gene ID" value="ASE19_11810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2086241at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="72" mass="7877" checksum="B9C7C90FC892B21D" modified="2016-01-20" version="1">MPDNAPSPQDVARLLARRSVPAADAGVTRQLECLACDRFTDHAPGPATYDRDGHLLVQWWRCLACREASTVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6V1</accession>
    <name>A0A0Q8V6V1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12090</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895043.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53116">
        <property type="protein sequence ID" value="KRC53116"/>
        <property type="gene ID" value="ASE19_12090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="968232at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="212"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="23897" checksum="117B2E515E72553C" modified="2016-01-20" version="1">MTITFITGANKGLGHETARRLVEYGHTVLLGARDPQAGRAAAAALGARFVQIDVTDEVSVAEAAADVLEHEGKIDVLINNAGIFGPMVDPAILTAADVAAVLDVNVVGVVRATTAFLPLLRKSTDPAIVNVGSGMGSLELTHDLSRAEAHAIVPGYTASKAALTMLTTQYAKGIPDIRINVADPGYTATDLNGNSGPQTVTEGTDAIVKLATEGPGHGSGRLVDRHGETTWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6W3</accession>
    <name>A0A0Q8V6W3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12400</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895100.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53173">
        <property type="protein sequence ID" value="KRC53173"/>
        <property type="gene ID" value="ASE19_12400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1550636at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="382" mass="40882" checksum="55658EA79C535321" modified="2016-01-20" version="1">MSRGRAWGWAAALREGSTTRWQEWPADGTGEGDAFRDDLPGAQQLGLLRRLNVAAEGAGRRVPLATADRVLAAGVSGRGRSDLPLIGADEPGRFGARPVDPDALPDDELLRVASALIADDVASTAHDPEERTLVERALGVRRPWVRAFRVVGVQWQAEYARQGLIAQGHRPGGRRPTAYLLADDLATVLAHAWTARSFDQGGTTWGEFLGSSSAFGHLPPRADLARMARSASHKYGAARVTIVLDRAALATELGVRRLQAPPVLGAHAVDLVRRVGEPLGLLVDEADRPRLLRESLGRRLDGLGGPALTVPRPREAWLSAQAERTRHELAAAGYPVLGDLDRLVPGPLPAEPVVPVDAEVLTLALGLLLDPVTATTQEDPTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V724</accession>
    <name>A0A0Q8V724_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">SBP_bac_5 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12080</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial solute-binding protein 5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53114">
        <property type="protein sequence ID" value="KRC53114"/>
        <property type="gene ID" value="ASE19_12080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023765">
        <property type="entry name" value="SBP_5_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01040">
        <property type="entry name" value="SBP_BACTERIAL_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="SBP_bac_5" evidence="3">
        <location>
            <begin position="66"/>
            <end position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="504" mass="54405" checksum="E2BD6502CAB6EF5A" modified="2016-01-20" version="1">MLTGTLAAVGLAACGGGASSSSSSTDTLTIAIPVDSPTSFQLNQECSSPMFQLAYEPLIRTGLDGEYEPGIAESWEYSENNTVFTMKIRDGIKFADGTDVTRDSVLDTLKYYKSVPGLNDGYIKPWKVTAEGDDSVKITSPNPFIGMESILGDSGNCNNGLIISAAGLKDPEKLKTATFGAGPYVYEPSESEPGDHYTYTPNPNYYDKSRQNWKKVVLRVMADQNTALNALASGQIQVDMAGGTSLVGQAKDKGYDVTVMRKSAIAMMLWDRSGEVTKALGDVRVRRAMALALDREAIAKAVGPDVTPQDQFTLTDYVGYDADLPSKYAYDVDEAKSLLSEAGYPDGFSMTLEVNSDDPAATTAVAAAVDQLGKIGIDLKVKALPNTSFFTDFAEKKYSAGAVSYGLYGVLPGDAYRLYKSPFSDVWNPFRSVDPEIDKAYDALVTSTDATFEDAAKQFNEAMTAKVWYLPIVTIPQFVFSDGIEIGKAEPMGQFAITAWKPKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V731</accession>
    <name>A0A0Q8V731_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16165</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893613.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50145">
        <property type="protein sequence ID" value="KRC50145"/>
        <property type="gene ID" value="ASE19_16165"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047355">
        <property type="term" value="F:CDP-glycerol glycerophosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007554">
        <property type="entry name" value="Glycerophosphate_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043148">
        <property type="entry name" value="TagF_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04464">
        <property type="entry name" value="Glyphos_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="383" mass="42643" checksum="EBC9887A6F49B0C3" modified="2016-01-20" version="1">MQTSREPQVIAYFADDPTRVYQLLQWLPVLERLDASYPVGILTRDAGTRDIVSERTTLPVLFAPGFNDLAELYDELDAKVVLYCNNSMTNFNSLLDGRMMHVHINHGESDKHSMVSNNAKAYDRVFVAGEAAVQRHRAALMELDEWRLVRIGRPQLDLRPAPLLPPTERRTVLYAPTWEGDAEYNCYTSVDVFGADIVRAVLALPDVRLVYKPHPKVTTSQIAAIREGHQAILDLIERAAEQDPAAGHAAVWQGDILAVFPGCDAMITDVSSVGLDWLYLQTDKPILMTDRHADAERLRQEVPVSRCADVVDAANLAGLGELVADRLEHDEHRIARAAMRHHYFDDNGVGDSTVRFVEAIGELVELRDRLQGASPAAGFEESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7F0</accession>
    <name>A0A0Q8V7F0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19280</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49031">
        <property type="protein sequence ID" value="KRC49031"/>
        <property type="gene ID" value="ASE19_19280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2070518at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="109" mass="12133" checksum="A57BBCB24181B470" modified="2016-01-20" version="1">MPRGHQTSMNVCLVWLGDPSAARHVLGEPGPWREVREAGPGLLLVETYETVSRVYHEVKWMLPDACPLLVAPVGWRPKARGLAAGTVSWLRNRLALPDRTRPDRTEEAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Y3</accession>
    <name>A0A0Q8V7Y3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12865</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895709.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53247">
        <property type="protein sequence ID" value="KRC53247"/>
        <property type="gene ID" value="ASE19_12865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="17"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="40"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="201" mass="21310" checksum="08C7998E010C21EE" modified="2016-01-20" version="1">MAGGRSYGGMSAEQRTSTRRASLLESCRTVIGRDGVAAVTVEAVCAESALGKRYFYESFPAREDLLLAVADAFYDGLLDQLRTTIAGIDPDRRARLVVDVLVGVLGGDERLARLYVESPGTPVLAARRQRAIEEYTRFVADEVLPGTARGKRARARRLLATRLLVAGTTVLVADWLAGDAEGTQADVVAAITALGGAVATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V804</accession>
    <name>A0A0Q8V804_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5 family acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14205</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897017.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53486">
        <property type="protein sequence ID" value="KRC53486"/>
        <property type="gene ID" value="ASE19_14205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1526822at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13673">
        <property type="entry name" value="Acetyltransf_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="155" mass="16100" checksum="D2E8900869BEB228" modified="2016-01-20" version="1">MTRLRPARPGEAAALSALALRSKGHWGYDDAFLEACRAELTLRDDELAARRTLVAELDGAVAGFGTLEGAPPYGELGMLFVDPGAIGRGLGGALLAALVTAARDEGFARLAIDADPYAEAFYLAHGAVRVGEVVSGSVPGRVLPQLELELGVTRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8C8</accession>
    <name>A0A0Q8V8C8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_14445</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896973.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53530">
        <property type="protein sequence ID" value="KRC53530"/>
        <property type="gene ID" value="ASE19_14445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1596937at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018488">
        <property type="entry name" value="cNMP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012318">
        <property type="entry name" value="HTH_CRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13545">
        <property type="entry name" value="HTH_Crp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00419">
        <property type="entry name" value="HTH_CRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00889">
        <property type="entry name" value="CNMP_BINDING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51063">
        <property type="entry name" value="HTH_CRP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="2">
        <location>
            <begin position="5"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="domain" description="HTH crp-type" evidence="3">
        <location>
            <begin position="140"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="24145" checksum="8D55CDC51468461F" modified="2016-01-20" version="1">MRWAVLEGLGEAEQAEFLALGRRRTFARNEVVCHMGDPADSYHLVERGRLGVRVSLANGDEAMINIIGPGASFGELALVRTDRQRTATIVALEQVTTLAIPGSAFASLRDQKPQFRDAVVRLMADRVDDLSHRLIEEMYLGFDRRLQSRLLDLARAYAEGTGVVHVPLTQSQLAQMTGGTRPTVNLALQRLADQGIVALSRGRIEILDMEALRRKVTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8X2</accession>
    <name>A0A0Q8V8X2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">L-lysine N6-monooxygenase MbtG</fullName>
            <ecNumber evidence="5">1.14.13.59</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Lysine 6-N-hydroxylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Lysine N6-hydroxylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Lysine-N-oxygenase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Mycobactin synthase protein G</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_12560</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-lysine + NADPH + O2 = H2O + N(6)-hydroxy-L-lysine + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:23228"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57820"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.14.13.59"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Siderophore biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.14.13.59" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53656">
        <property type="protein sequence ID" value="KRC53656"/>
        <property type="gene ID" value="ASE19_12560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="324612at2"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00108"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047091">
        <property type="term" value="F:L-lysine 6-monooxygenase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044249">
        <property type="term" value="P:cellular biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901566">
        <property type="term" value="P:organonitrogen compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025700">
        <property type="entry name" value="Lys/Orn_oxygenase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42802">
        <property type="entry name" value="PTHR42802"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13434">
        <property type="entry name" value="K_oxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00016406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00029939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00031158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00032493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00032738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC53656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="463" mass="51377" checksum="1D5649FF635F8110" modified="2016-01-20" version="1">MRRPPGRRTGGGGAVTVHDFVAIGLGPFNLGLACLTDPLRGTHESPGLDGVFLEARDGFDWHPGMLLDDATLQVPFLADLVTMADPTSRWSFLSYLKQSGNLYPFYIRESFYPLRREYDDYCRWAAESLPSVRFGQRVTDVEHDGSAYLVRTATGEELRARRLVLGIGTSPRVPTALRPLLGAPGVMHSADYLAHREELQQQERITIVGSGQSAAEIYLDLLAAAPEHGYELVWLTRSPRFFPMEYTKLTLEMTSPEYGAYHRALPMETRDRLARDQRHLFKGISGDVIDAIFDLHYQQRVTGDGPRTTLMTHTEVRDARSLGRSGAELDLLHTETGEAFSVRTGGLVLATGYGPTTPGFLAGIEDRIRRDPRGRYDVADDYSVDVAGGEVFVQNAEEHTHSLLAPDLGMGAYRNSVIIAAMLGREVYPVEKRIAVQTFGVPDQFRVSRLAGARTSTTEEIFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V958</accession>
    <name>A0A0Q8V958_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">DNA helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13590</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897150.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53675">
        <property type="protein sequence ID" value="KRC53675"/>
        <property type="gene ID" value="ASE19_13590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="291634at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140658">
        <property type="term" value="F:ATP-dependent chromatin remodeler activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="3">
        <location>
            <begin position="145"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="4">
        <location>
            <begin position="507"/>
            <end position="675"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="971"/>
            <end position="1019"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1057" mass="117959" checksum="E7768C5B9E475A8B" modified="2016-01-20" version="1">MSGPPEGRVGRNADRPTLPEPGQVVEVRGSTWAVARVQVQGLPRSPADEVTAQLSHVVELQSLDEDRLGEQLSVVWELEVGHTVTPAQGLPDLIYSDAFDEPATLAGFIDAMRWGAVTSADPNRYQAPFWSGATVEAYQLEPLRRALGVPRANLLLADDVGLGKTIEAGLVIQELFLRHRARTAVIVCPPSLALKWQDEMREKFGLEFTIVNSELMALVRRTHGLHANPFQLFPRVIVSMAWLPQVRAQRLLRDVYTQATNPKTGKRYAFDILVVDEAHHVAPSSPSAIAGGRGYAVDTQRTVAVRQLAEKCEHRLFLSATPHNGHPESFTALMEMIDPRRFARGANLDSTALKDVTVRRLKTNLSGKGFKKRKVSTLDVTPSDSEQQMFSLLDDIVTKSAKQNGTKPGGDIVTMLLKKRFLSSPFAFGMSLSHYLASKAGRGLSEDEYDDIFGEGQSDEEEGLWEQDEAEKLRESKGSDPLVAAESGQLETLMEWGLGYESRADSRLDRLIHFLDAVCRPSGNSWSNERVVVFTEYAHTVDWLTRVLNQKGYTNDRLAVIQGSTATEDREYIRSQFTADPAKEPVRVLLATDAAGEGIDLQTYCHRLVNFDIPFNPSRLEQRIGRIDRYGQTAEPQVFHFVPVLDSSTYAADLNFMERIARKIAQVEYDLGSANQVVGEEIQGHFGKRTPAKAKAKGVDTNEVINSALAGGMELNARLTQLEQGYDESRTEMHLDPANLRRVVDTALRINHQSPLIENHEFAQDTDAEVFTVPSLTTGWHDTLRGLDTRLKPGELRPITFDADAAEGRADLVYVHLGHPIVQKAQRLLRRSLWSVDSPLNRVTAVVVDDLEKSFVAAVTRMVLVGRGGVRLHEEVFLAGVRLKGRRAMAEEKAEAALDKALDRERLSVADDRVRDQLCDLWNIPDAPLRLRLEESMQARAGRRHELVIEQLAKRQAADIQRAKEIFAAFRANLRDSLARLKAEEDEAEGQLFTDPDQMRQWRRDIDAMSRRLDELDDEEAREIAAITDRYADVKPHTTAAAVVFALTRADADGWVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9M6</accession>
    <name>A0A0Q8V9M6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08230</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895478.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54046">
        <property type="protein sequence ID" value="KRC54046"/>
        <property type="gene ID" value="ASE19_08230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1944338at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="110"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="136" mass="14383" checksum="71F49708E744B575" modified="2016-01-20" version="1">MTLDNAVWLLTGLAAVVVLLTRMRLSSEQFQAGHALVPLGIIKAHTVVGVLALVVWIAYLVSPGGTLGLVALAIWWIEVALGILILTRWMTGTGKHATATTGDSWGEGPALSILGHVGMLLGISFFTWIVLADKLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9X0</accession>
    <name>A0A0Q8V9X0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RNA polymerase subunit sigma</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_08200</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895474.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54042">
        <property type="protein sequence ID" value="KRC54042"/>
        <property type="gene ID" value="ASE19_08200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014325">
        <property type="entry name" value="RNA_pol_sigma-E_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02983">
        <property type="entry name" value="SigE-fam_strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="15"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4" evidence="7">
        <location>
            <begin position="106"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC54042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="168" mass="18938" checksum="88CDC54F93A9F9E8" modified="2016-01-20" version="1">MHPSARDEFERFVHARTPALTRTAYLLTGDAHLAEDLVQTALFNAARAWHRIEGDPEPYVRRILYTQNISWWRRRRLREALTPAYDDRASLAAPGDADLRISLEAALAQLTQRQRSVLVLRFFEDLTEVQAGHALGISSGTVKSTTRAALARLRALAPHLEDLLEEAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Z2</accession>
    <name>A0A0Q8V9Z2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">OmpR/PhoB-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07510</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53919">
        <property type="protein sequence ID" value="KRC53919"/>
        <property type="gene ID" value="ASE19_07510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="817710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="144"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="1">
        <location>
            <begin position="144"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="244" mass="26115" checksum="545D8BB3AE10ABDD" modified="2016-01-20" version="1">MRAYLHRWTEATGAQLLVVDPEPDEGALAEGMAGHGVHVTWVASTLDGLVEFGRTDPHAVVVAPGTPGIPAEEFVGLIRRHGAPYVIAGTEDLDELTDAAATTRRGSGVGSLMLAGASAVVLRPYAPQHLWELISHGPRSVSEHARVEVGPIELDATAFTVRVNGQRIADLPLKEFELLRTLMLHSPGVVTDDELGDALWGDNGRRPGGNTIAMHVTRLRARLGTVAVVRRIRGRGYSLTIDPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA21</accession>
    <name>A0A0Q8VA21_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15655</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50055">
        <property type="protein sequence ID" value="KRC50055"/>
        <property type="gene ID" value="ASE19_15655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2174356at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359837" evidence="1">
        <location>
            <begin position="26"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="295" mass="31649" checksum="CACCAE49F582E03C" modified="2016-01-20" version="1">MLGRLVNAAVVGVVLVSGQVAVAEASPPVSPTVTARVERVAVRTVTYAGSGRKVHLGTVGNLTGTSRSFRVFVNRQLTQLWRSVGGTAACKRAPYVTVKRWRSDGFAQISGVGTASPCPSGGHHAIWLVRGGVWRAPYLLGGHEALWCTDLRAYGVPTAVSGGSCYGDLGGYRSYANFRQPRDLRTVGYAGRIVARTVNAVQPAATARWASQSVTDRLYTMHWNDDVLTIVKCFGRTDPDYGSYLGTATKGCLLDAAYYGNGGDVPTYRAYYVLRLRPGVLGRWRVSGMVGHSST</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA66</accession>
    <name>A0A0Q8VA66_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14985</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896460.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51393">
        <property type="protein sequence ID" value="KRC51393"/>
        <property type="gene ID" value="ASE19_14985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1693052at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070567">
        <property type="term" value="F:cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034683">
        <property type="entry name" value="IspD/TarI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01128">
        <property type="entry name" value="IspD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="204" mass="21196" checksum="FA058F3C2AC12774" modified="2016-01-20" version="1">MNPHPYDVVDISAPVSGIVVEEGRGSLPFHLIHGESLVATAAWAVGEAGVDLIDQTLSWESVIERGGALVLHDPLCPMTPPDFIARCADRAAVEDRIVVGVRPVTDTVKEAHAATDAGGAVLGATVDRDGLVTVCSPVVLPHAVVADLFGDGGSLPSTDFVALVTALRDRYGDARVELADAPPEARRVAGDEDIAVLAALTDPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA69</accession>
    <name>A0A0Q8VA69_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glutamate-1-semialdehyde 2,1-aminomutase</fullName>
            <shortName evidence="7">GSA</shortName>
            <ecNumber evidence="7">5.4.3.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Glutamate-1-semialdehyde aminotransferase</fullName>
            <shortName evidence="7">GSA-AT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">hemL</name>
        <name evidence="9" type="ORF">ASE19_10185</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(S)-4-amino-5-oxopentanoate = 5-aminolevulinate</text>
            <dbReference type="Rhea" id="RHEA:14265"/>
            <dbReference type="ChEBI" id="CHEBI:57501"/>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <dbReference type="EC" id="5.4.3.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.3.8" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894710.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52777">
        <property type="protein sequence ID" value="KRC52777"/>
        <property type="gene ID" value="ASE19_10185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="493793at2"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00317"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042286">
        <property type="term" value="F:glutamate-1-semialdehyde 2,1-aminomutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00375">
        <property type="entry name" value="HemL_aminotrans_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004639">
        <property type="entry name" value="4pyrrol_synth_GluAld_NH2Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00713">
        <property type="entry name" value="hemL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 7" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="4 7 8" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="7">
        <location>
            <position position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC52777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="451" mass="46724" checksum="7DB51D308C13FB47" modified="2016-01-20" version="1">MPDLVTSGSDELFARARAVTPGGVNSPVRAFNAVGGTPRFIRSATGPWLTDVDGNRYVDLVCSWGPMLLGHGHPAVVEAISEAVSRGTSYGTPTEGEVALVEAIVARTPVERLRLVSSGTEATMSAIRLARGFTGRDVVVKFAGCYHGHVDSLLAAAGSGLTTFSIPGTPGVPASSTELTLVLPYNDREAVAAVFAEHGDRIACLITEAAPGNMGVVPPAPGFNQFLAETCRAHGALFVSDEVMTGFRVSRAGQWGTDGAVEGWVPDLMTFGKVMGGGLPAAAFGGRADVMGHLAPEGPVYQAGTLSGNPVATAAGLATLTHATDEVYARLDVVADALRAGVAETFAAAGLPHVIQSTGSMFSVFLTDEPVSNYAEAQRTDVPAYAAFFHSMLDQGVHLPPSAYESWFVSSSHDDRAVQQVLDALPAAARAAAEVSRLAGARTSTTEKADE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAD5</accession>
    <name>A0A0Q8VAD5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Acetyl-CoA acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_08865</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895584.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54152">
        <property type="protein sequence ID" value="KRC54152"/>
        <property type="gene ID" value="ASE19_08865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="550338at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="3">
        <location>
            <begin position="5"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="4">
        <location>
            <begin position="275"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="1">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="353"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="397" mass="41037" checksum="B03509A03CBFCCA0" modified="2016-01-20" version="1">MPTPVIVDVARLASGKGKPGGALSGTHPTSMLVHVLKAIVERNDLDPALVDDVITGCVMQGGEQALNIGRAAVLGAGFPESVPATTIDRACGSSQQAVHFAAQGVAAGAYDVVIAAGVESMSRVPMGSTTMGQDSSGPEVHARYPEGLVNQGVSAELVARDWKLDRATLDEYSAESHRRAAAAIANGAFDNEIVPITVTDAEGNAVEHKVDETVRASTTAEGLGGLRPAFRTDEFAARFPDVEWAIHPGNSSPFTDGASAALIMSEEMASRLGLTPRARFVSYAVTGSDPLMMLTGPIPATQKALARAGLGIDDIDAYEVNEAFAPVPLAWAHDLAADPAKLNPLGGAIALGHALGSSGTRLLTTLVNHLEATGGRYGIQTMCEAQGMANATIIEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBW5</accession>
    <name>A0A0Q8VBW5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">5,10-methylene tetrahydromethanopterin reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04325</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the NtaA/SnaA/DszA monooxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894367.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54714">
        <property type="protein sequence ID" value="KRC54714"/>
        <property type="gene ID" value="ASE19_04325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1653347at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016215">
        <property type="entry name" value="NTA_MOA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000337">
        <property type="entry name" value="NTA_MOA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03860">
        <property type="entry name" value="FMN_nitrolo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0288">FMN</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="3">
        <location>
            <begin position="28"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="153"/>
            <end position="157"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="226"/>
            <end position="229"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00033748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000337-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="457" mass="50736" checksum="27911726C0614987" modified="2016-01-20" version="1">MAKRIGLNAFNMTAAGHQSSGMWRHPESQAHRYKDLDYWLDLAKTLERGRFDALFLADVLGPYDVHGGSVDTALLNGMQIPANDPFQYISAMASVTSNLGFAVTGSATFEHPYPFARRMSTLDHLTKGRIGWNVVTSYLASASRNFGTEPLGHDDRYELAEEFMTVTYKLWEQSWEDDAVELDKERGVFVNPSKVHPIRHKGRFFDVDGFNMSEPSPQRTPTIFQAGASSRGRQFAAEHGEGLFVNVLNSNLSKVITDDIRTQAEAAGRQRNDVKIFTILTAVVADSDAEAERKYKDYQQYASPEGAMALFGGFSGVDLSQFDPNTPLEAMDTNAIQTVLNLFTKLDPSRRWTPADIANHMSIGGIEPVLVGSPETVADEIERWIDEGDLDGINLSYAVTPHDIEAFVDTVVPELQKRGRVWNEYEGETLREYIAGPGNTRLSSTHPGYRAVSKTPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCB5</accession>
    <name>A0A0Q8VCB5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Signal peptidase I</fullName>
            <ecNumber evidence="3">3.4.21.89</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_13150</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>Cleavage of hydrophobic, N-terminal signal or leader sequences from secreted and periplasmic proteins.</text>
            <dbReference type="EC" id="3.4.21.89"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the peptidase S26 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.89" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53299">
        <property type="protein sequence ID" value="KRC53299"/>
        <property type="gene ID" value="ASE19_13150"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006465">
        <property type="term" value="P:signal peptide processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06530">
        <property type="entry name" value="S26_SPase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000223">
        <property type="entry name" value="Pept_S26A_signal_pept_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019533">
        <property type="entry name" value="Peptidase_S26"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43390">
        <property type="entry name" value="PTHR43390"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10502">
        <property type="entry name" value="Peptidase_S26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00727">
        <property type="entry name" value="LEADERPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02227">
        <property type="entry name" value="sigpep_I_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359907" description="Signal peptidase I" evidence="4">
        <location>
            <begin position="22"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S26" evidence="5">
        <location>
            <begin position="4"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR600223-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF10502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="168" mass="17341" checksum="AB556BA034C61E15" modified="2016-01-20" version="1">MALAAALLAFAAAVVVPRALPWQRITVTSDSMAPWLEPGDSVWMDTRTAGGQGVARGDVVVFADPGDWSGAGAPPLLVKRVVGLPGETIACCDAAGRVLVGGEPLEEDYLPEGTRGSTLAFDVVVPAGEVWLMGDHRTSSRDSRLHELAGSHGSVPLTAVVGTVADRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCF2</accession>
    <name>A0A0Q8VCF2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04775</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894291.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54790">
        <property type="protein sequence ID" value="KRC54790"/>
        <property type="gene ID" value="ASE19_04775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1891666at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359901" evidence="1">
        <location>
            <begin position="32"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="33861" checksum="3B901E8B10AD8EEA" modified="2016-01-20" version="1">MKRYATTVVVGLAVAATVAAVGIAVLKATDAIVGGPSGDCTATVSGATVEVSAEQAENAALIASIAVRRGMPARAASIALATAYQESKLENIDYGDRDSLGLFQQRPSQGWGTREQILDPVHATNAFYDALAKVDGYENMEITVAAQHVQRSAFPDAYADHEEDGRALASSLTGFSPASFSCDLDGGAPSADTELTGTGLTPRADATRKELLEAFGRLSLGGFDADGVNSGHMEGSAHYDGRAIDVFVRPINATNKVKGWAIAHWSVANAARLDIRTVIFDDRIWTAGRDGWRDYDPPSSSGDIKILEHRDHVHVDVFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCG1</accession>
    <name>A0A0Q8VCG1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peripla_BP_4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04350</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54719">
        <property type="protein sequence ID" value="KRC54719"/>
        <property type="gene ID" value="ASE19_04350"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025997">
        <property type="entry name" value="SBP_2_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13407">
        <property type="entry name" value="Peripla_BP_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peripla_BP_4" evidence="1">
        <location>
            <begin position="65"/>
            <end position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="383" mass="40428" checksum="7117E6D9B42BBFA6" modified="2016-01-20" version="1">MLALALTACGGAGDDGGGTAETSASVIAEAKAAVAKNREGTDRALPISAPKPQAGQNVWLISCSQAGEGCSAPAEGAEEAAAVVGWDLTIVDGKGRPDVFASAIRSAVADDADGIILDAIDCIAAKSALQDARKAGTKIFAFYAFDCNDPILKDQSEPLFDAELSFGNGVSFIDYVEKVQSRSAADYIIAQTEGKAKIIEFTEDDLVITQHLKKGFEDRIKDCEGCEIVKKVPFNLDDFVTGKLGGKAEAALTQNPDANVLYSPYDSALTVGIAQAVVASGRNDDILVTGNEGLTPNIGFTQDNKGQDFITGLPARWVGWAAIDSMNRLLQGEPQVDQGMGLQNIDENGPFPTQTTFYDGNMNPDGTPKQDYAANFKKIWDVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCP9</accession>
    <name>A0A0Q8VCP9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05650</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894145.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54936">
        <property type="protein sequence ID" value="KRC54936"/>
        <property type="gene ID" value="ASE19_05650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1719670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="15963" checksum="C8E38203CD519C24" modified="2016-01-20" version="1">MPAFSQTHETTIDAPAPTVHALVADFHEWIKWSPWEGLDPDLQRTYDGAGVGASYAWAGNSKAGEGRMTFTSITPEQVVVDLEFLKPFKAQNVVTFDLAPAGAGTKVAWTMAGQRNLAFAVMGKLFFDKAIGKDFTKGLASLKAAAEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCY9</accession>
    <name>A0A0Q8VCY9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AAA family ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06630</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894504.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55102">
        <property type="protein sequence ID" value="KRC55102"/>
        <property type="gene ID" value="ASE19_06630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="688156at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011703">
        <property type="entry name" value="ATPase_AAA-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07726">
        <property type="entry name" value="AAA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_3" evidence="1">
        <location>
            <begin position="57"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_lid_2" evidence="2">
        <location>
            <begin position="268"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="341" mass="37597" checksum="97AC72AE141F3A8B" modified="2016-01-20" version="1">MTELRRAPVDSTVPLTQDELVRATERISLVSDAFSSRVVGQHNVRTALLVTLLAEGHVLLESVPGLAKTLAASTLAQAVDARFARIQCTPDLLPSDIIGTQVYDPRRHEFETQLGPVHANFVLLDEINRASAKTQSALLEAMQERQTSIAGAIHPLPDPFMVLATQNPIEEEGTYVLPHAQMDRFLLKEIVDYPSEDDELVVLERIDDGTLGQHMTDVAAAATTAEVVDLQGLVRRVYVDPAIRRYITAVVRATRDVTSLLGPELGNYVEIGASPRGSIAFFQAARAMAVVQGRHYVIPEDVRELRHSVLRHRIHLSFEALADRVRTETIVDAVFRAIPTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCZ2</accession>
    <name>A0A0Q8VCZ2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cell division protein CrgA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">crgA</name>
        <name evidence="4" type="ORF">ASE19_13375</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Involved in cell division.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the CrgA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53673">
        <property type="protein sequence ID" value="KRC53673"/>
        <property type="gene ID" value="ASE19_13375"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00631">
        <property type="entry name" value="CrgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009619">
        <property type="entry name" value="CrgA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06781">
        <property type="entry name" value="CrgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3" id="KW-0132">Cell division</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="75"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="103"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="144"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="17478" checksum="5E9FDD57F42802F4" modified="2016-01-20" version="1">MSKNKDGDVFADADRGPVVSLRFAIALLLILGGIGWIFYYYFGIRPTDGFGSIGSDGKPNQPGGPSFFADLEGKNYLIGFLALFLGLAVSAHPKTPLGRGRGVVIGMLGCFLIGLLWICVFYIFLTGDNPKDIAILNDLGQKNLFVGIGFMAVGFTFATRWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDG2</accession>
    <name>A0A0Q8VDG2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09570</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894611.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52673">
        <property type="protein sequence ID" value="KRC52673"/>
        <property type="gene ID" value="ASE19_09570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="990666at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="31319" checksum="724D2E86FC37AD9A" modified="2016-01-20" version="1">MELQQMRYVVAVAELGSFTRAAERCFVVQSALSHQVARLEEELGTRLFHRTSRQVRLSPAGEAFLPVARQCLDAAERAVAEVAAATGEIRGTLAVGLVPTVAAIDVPVVLREFREQHPQVRLRLETGGSDDFLRQVAEGALDVAFLGLPEGREVTGVGYQLLSRDRHLAVLAPDHRLAVRRRLRLADLADEPFVDFPSGTAGREQSDRAFAAAGLAREVVFEVMDMLLMARLVRSGLAVGLLPSGYVAQVPDLVTLPVQGAPSRGEHVIWSGFGPAPAAAALLAQIGVPVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDG4</accession>
    <name>A0A0Q8VDG4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04955</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894409.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55132">
        <property type="protein sequence ID" value="KRC55132"/>
        <property type="gene ID" value="ASE19_04955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1107286at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="19542" checksum="FD97976E8D8AAA97" modified="2016-01-20" version="1">MWRPVGSSYDAFASHLRRVDAFPTYLPWPLGPGWSVTDFAAVATATGAARATMTCVSGSSQLDGPVDVMVVSEEPGTGLGARIAGLPTEDGADRIDPGHEIGEGPAPVRVRVDQYPVGLWPVSISASPGEWDRSVLAGEAAGRWLWLVLRPASAILLLRDDWILRDVSATGPGLVALPFGGAAPSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDJ6</accession>
    <name>A0A0Q8VDJ6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L7/L12</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rplL</name>
        <name evidence="7" type="ORF">ASE19_09750</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. Part of the ribosomal stalk of the 50S ribosomal subunit. Forms a multimeric L10(L12)X complex, where L10 forms an elongated spine to which 2 to 4 L12 dimers bind in a sequential fashion. Binds GTP-bound translation factors.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the bacterial ribosomal protein bL12 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894643.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52705">
        <property type="protein sequence ID" value="KRC52705"/>
        <property type="gene ID" value="ASE19_09750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1822695at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00387">
        <property type="entry name" value="Ribosomal_L7_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.710">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00368">
        <property type="entry name" value="Ribosomal_L7_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000206">
        <property type="entry name" value="Ribosomal_L7/12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014719">
        <property type="entry name" value="Ribosomal_L7/12_C/ClpS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013823">
        <property type="entry name" value="Ribosomal_L7/L12_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008932">
        <property type="entry name" value="Ribosomal_L7/L12_oligo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036235">
        <property type="entry name" value="Ribosomal_L7/L12_oligo_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45987">
        <property type="entry name" value="PTHR45987"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00542">
        <property type="entry name" value="Ribosomal_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16320">
        <property type="entry name" value="Ribosomal_L12_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48300">
        <property type="entry name" value="SSF48300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54736">
        <property type="entry name" value="SSF54736"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00855">
        <property type="entry name" value="L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 7" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Ribosomal_L12_N" evidence="6">
        <location>
            <begin position="5"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L12" evidence="5">
        <location>
            <begin position="64"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF16320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="130" mass="13388" checksum="84C7508D64891119" modified="2016-01-20" version="1">MAKLTTDELLDAFKEMTLIELSEFVKQFEETFGVTAAAPVAVAAAPAAGGAAGGADEAAAQDEFDVILEAAGDKKINVIKEVRALTSLGLKEAKDLVEGAPKAILEKVNKETADKAKEALEGAGASVTLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VES8</accession>
    <name>A0A0Q8VES8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12210</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895063.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53136">
        <property type="protein sequence ID" value="KRC53136"/>
        <property type="gene ID" value="ASE19_12210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="379" mass="39273" checksum="437E70CE586FE56A" modified="2016-01-20" version="1">MPRPSRRILAALPLALVLAGCSGETSYDDRDWSAVGPVSSPVPDVREPDLATTRSRLAALDPCAVGAAGSADALAEPGQGDACTVDRGEGSVEVLTDARYFVDGSGPDAVNALDSRERIEVAGFAAWVGEGPVTSGGDDAPCAVVVPASLELALAVVDSEDDCAVAQQVAEAALADLDAVVREGRTLDPPVFYAADETDPGGEGACSELGDQIEWLCAPVGDVEVPDDPVDLIRHGEADPGLLCVPALEAARATAAGQGRSWVAVTTAVGQQELAERASYDGPRQCTLLEAKDDPDAAADADPVTIIVTARRQALGTRANTEVADHPAYHSEQSGTWEVALTDVDDHGFLRVEVLDAGRQEPDWAKAFVADLVERAFGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEZ0</accession>
    <name>A0A0Q8VEZ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12475</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AfsR/DnrI/RedD regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895111.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53184">
        <property type="protein sequence ID" value="KRC53184"/>
        <property type="gene ID" value="ASE19_12475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15831">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041664">
        <property type="entry name" value="AAA_16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005158">
        <property type="entry name" value="BTAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13191">
        <property type="entry name" value="AAA_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03704">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01043">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="1"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1004" mass="105523" checksum="9B2ADD1E8ED245BA" modified="2016-01-20" version="1">MVDYFLSGAVAASEAGTPLALGGPKQRCVLAVLLAHRGSVVSVDRIVDAVWAESAPAKTLTSVRSYVANLRRVLDATAGGAGPARLVSRPHGYQLDLLEGDTVDLFCFEDLVVTGRAALVRGDARAAEDDLVAALALWQGDPFGEFAAQEFAATEAIRFEALRAAAVEARFDAGLQLGVGADLVPELEAAVAEHPLQERLWGHLVLALHQAHRTADALRAFDRATAVLEEEVGASPGEGLRAVLRQVREEAPASPVARPVAVVPPLFVGRDAELDLVTGVGVAAGGGLMLVTGESGIGKTALVQVATDRARAAGAVVAWAGHPSGVRLPLLWTWIQVLRQAGSAAGEAGRKAVLAEAPDLVAALVPEWDDTGAVDERAPASGFALVEGIVTALRILAAHASLVVVVDDLQHADEESLDVLALVAAEFPRLPVQVVGTWTWFGSERPMNRAAFDRLARSCDRGVVHLGGLDEAAAVSLVEATAGAPVASGVAAEVWRRAGGNPFYVKEMARSLAGADAGATVPSTVVGVVGRRLDALDPACRRVLEAAAVIGPEFAVADLADVVDLPISAVRARLQPAWQAGLVDELSHRPGALRFSHGLLRDALLAQLSGAERSRVHAAIAARRAPGLASSPYELAISTADHAWQAGTELDPVVALALVEGAVRRAMDRSAYADIVDLTRKAIQVCERLPAEPAYLDRQVTLWLHLAGAQSIVGGMAGADATESVRRAFEIGQDLKGRSFYSAVAMQCQVLVAHGRIDEAMVIGAGLHEEHLRTGDPDIGLVSHIVQVMSASLRGDVDELVSAGQHMLDTFAPPETLTDPLHFFHPRVLCWMALGEACRGRAEECDAHIRHAFELAHARNSLFDVLVARIAVVESAAILGRLDGTAELADGVDRDFVAAGSEQWAAVARIIAVWARTLSGEPGEDDPRLVVRQALEDYTFDGTRVMTPFLLALIADIEAAHGDLDAARELVQRAARVARATGEQAWSGAIAERAAALAAPTATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF11</accession>
    <name>A0A0Q8VF11_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acetate permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_12580</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895127.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53200">
        <property type="protein sequence ID" value="KRC53200"/>
        <property type="gene ID" value="ASE19_12580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="278483at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1730.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038377">
        <property type="entry name" value="Na/Glc_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001734">
        <property type="entry name" value="Na/solute_symporter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00474">
        <property type="entry name" value="SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50283">
        <property type="entry name" value="NA_SOLUT_SYMP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="47"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="76"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="118"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="157"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="188"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="245"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="279"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="338"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="389"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="413"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="448"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="500"/>
            <end position="517"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="546" mass="56861" checksum="994D69906DD0031D" modified="2016-01-20" version="1">MDHQLLTAILFLSVVALTLFITIRASRNSSGTADFYAGGRSFSGFQNGLAIGGDYMSAASFLGISGAIALAGYDGFLYSIGFLVAWLVALLLVAEMLRNSGKFTMADQLAFRMKQRPVRTAAATSTVVVSVFYLLAQMVGAGSLVVLLLGIDKTNTLAISAVIAGVGALMIVYVTVGGMKGTTWVQIVKAILLMVGSALIVVLVLAKFDFNLSELLGAAQSNSGKPGFLEPGLKYGIDQTHKLDFLSLGIALVLGTAGLPHILVRFYTVPTSRDARKSVLWAIGLIGVFYLFTLVLGFGAAALLKGDKAADVAASSGNLASPLLAEAVGGGGGSTGGAILLAVISAVAFATILAVVAGLTLTSSTSVAHDIYNAVIRKGTATEEEEIRVTRYAAAGLGIIAILLAIPARNLNIAFLVGLAFAVAASANLPAIVYNMFWRRFNTRGATWSIYGGLVSCITLVFFSPVVSGKTGLDADGNVISAALFPLGVDFHWFPLENPGLISIPLGFFFGWLGTVTSKEPAAEDRFTELEVRALTGAGAEQAVQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGB1</accession>
    <name>A0A0Q8VGB1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11580</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53026">
        <property type="protein sequence ID" value="KRC53026"/>
        <property type="gene ID" value="ASE19_11580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2172789at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="185" mass="20944" checksum="E4DD9934E8683FA2" modified="2016-01-20" version="1">MLVDAGFTRKGRKFSIEAPDGSTGEIEVVRSLQGRHEAEFQVDFFVSPRVWAEYQLCANGIQGAHLWFERLRGVGDGTPWDSQWSFDVADERAGARLREAIEQKLLEQLPLLDQANLLNYSRKPRSEARGVTARREVVVPALLAAQGPSIELDEMLAGLGNDPERREADEKFVAFIREWLAENYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGE7</accession>
    <name>A0A0Q8VGE7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ribonuclease VapC</fullName>
            <shortName evidence="5">RNase VapC</shortName>
            <ecNumber evidence="5">3.1.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Toxin VapC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">vapC</name>
        <name evidence="6" type="ORF">ASE19_14750</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Toxic component of a toxin-antitoxin (TA) system. An RNase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PINc/VapC protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896921.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53581">
        <property type="protein sequence ID" value="KRC53581"/>
        <property type="gene ID" value="ASE19_14750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1968541at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090729">
        <property type="term" value="F:toxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00265">
        <property type="entry name" value="VapC_Nob1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006226">
        <property type="entry name" value="Mtu_PIN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022907">
        <property type="entry name" value="VapC_family"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00028">
        <property type="entry name" value="Mtu_PIN_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0800">Toxin</keyword>
    <keyword evidence="1 5" id="KW-1277">Toxin-antitoxin system</keyword>
    <feature type="binding site" evidence="5">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="15478" checksum="03E772C907253CE6" modified="2016-01-20" version="1">MSRGLLDVNVLLALFDAAHADHRRAWEWLGANIAEGWASCPLTQNGFVRIISQPRYPNAVPPGRAIALLGEAAETEHHEFWPDEVSILDPGTVRSDRVHGPGQLTDLYLLALAVARGGRFVTFDDGIPLSAVPGATPEHLVVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGQ7</accession>
    <name>A0A0Q8VGQ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Integrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_04235</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894383.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54697">
        <property type="protein sequence ID" value="KRC54697"/>
        <property type="gene ID" value="ASE19_04235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="785253at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="5">
        <location>
            <begin position="75"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="4">
        <location>
            <begin position="179"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="398" mass="43970" checksum="25D8988321B7423F" modified="2016-01-20" version="1">MSRPRTPVGTFGDIHYSVLAPGKVRARTRFRDVDGQRRQVEVVGVSRTDAEHRLKQKLATRPQFSSRGHSLTADSSFGDLVTMWLDDLDLENALAASTRALYERNMRQIVLPAFEHFLLREITVARVETYLKTLASRRSYSYAKQAKTVLNLALGLAVRYEAIAKNPVRDIKRMKKPPSEAVALTLGEVADVRAAARSWRRGSGLSGPPPDGQLEDIIEVMLGTSARIGEVLAIRKCDVDVTVTPATVKICGTIVSPRGGATHRQEHPKTRASRRTIAVPSYVTAVLKKRLKVLKDESDDHLIFFTRNGTPLTTNNVRRRLRAVLEAAGIDGVTPHSFRRTVATIVDRAGGAELAAELLGHSSSDITKEHYIQPDDQVNPMTAQILEALAPEHDPDDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH62</accession>
    <name>A0A0Q8VH62_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_03180</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892845.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56826">
        <property type="protein sequence ID" value="KRC56826"/>
        <property type="gene ID" value="ASE19_03180"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="52"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="83"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="141"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="169"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="202"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="228"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="269"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="298"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="331"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="361"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="398"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="438"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="17"/>
            <end position="461"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="467" mass="46774" checksum="DA868BCA8488D082" modified="2016-01-20" version="1">MGPCADVPLASPAGRAVLAAATLGSALALLDSTVVNVALRQVGEDLDAGLGILQWVSNGYLLSLASLTLLGGSLGDRFGRRRVFVIGVVGFALTSAACGLAPTAPVLVAARVAQGIAAALLVPGSLAMIQGTLAPADRARAIGTWTGLGGVATAIGPLLGGWLVQSASWRWVFLVNLPVAALALVAARLVPESRDPEAVPGFDTRGAALGALSLGGVTYALIEWTAVPASAAVALAVGVAAGIAFVVVERRSAHPMLPLSLFGIRQFSAANAMTLLTYAALGGVLFFLVLQLQTVAGFGPLAAGLSTLPITVVMLLLAGRGGALAGRIGPRLPMTVGPLLCGLGTLGLSRVDADPTYWLDVAVPLTVFGLGLASLVAPLTATVLAAAPDHHAGVASGVNNAVARAGSLLAVAALPLLVGLSGEDYQVASVFSDGYRAAMLWCAGLLAVSGVLSWLTIRNPVSDVPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHF8</accession>
    <name>A0A0Q8VHF8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Ribosome maturation factor RimP</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rimP</name>
        <name evidence="6" type="ORF">ASE19_02975</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Required for maturation of 30S ribosomal subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the RimP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892815.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56796">
        <property type="protein sequence ID" value="KRC56796"/>
        <property type="gene ID" value="ASE19_02975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1595498at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01734">
        <property type="entry name" value="YlxS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01077">
        <property type="entry name" value="RimP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003728">
        <property type="entry name" value="Ribosome_maturation_RimP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028998">
        <property type="entry name" value="RimP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036847">
        <property type="entry name" value="RimP_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028989">
        <property type="entry name" value="RimP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035956">
        <property type="entry name" value="RimP_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33867">
        <property type="entry name" value="PTHR33867"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02576">
        <property type="entry name" value="DUF150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17384">
        <property type="entry name" value="DUF150_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74942">
        <property type="entry name" value="SSF74942"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75420">
        <property type="entry name" value="SSF75420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="DUF150" evidence="4">
        <location>
            <begin position="22"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="domain" description="DUF150_C" evidence="5">
        <location>
            <begin position="100"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF17384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="173" mass="18535" checksum="A565F5B7793AFFC9" modified="2016-01-20" version="1">MGSGQGAQRATAERIEEVLTGPLAELGLDVEAVEITPAGKRRVLRVAVDTDGGPTLDDVAAATKVIDAVLEADGADGGSDVMGELPYTLEVTSRGVDRPLTLPRHWRRNEDRLVKVTLADDSTITGRIGGSDDEGVDVAVDGAERRIPYTDVRKALVQIEFNRKAREEDKDAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHI6</accession>
    <name>A0A0Q8VHI6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03985</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892987.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56970">
        <property type="protein sequence ID" value="KRC56970"/>
        <property type="gene ID" value="ASE19_03985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1582456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047560">
        <property type="term" value="F:3-dehydrosphinganine reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006666">
        <property type="term" value="P:3-keto-sphinganine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030148">
        <property type="term" value="P:sphingolipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08939">
        <property type="entry name" value="KDSR-like_SDR_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045022">
        <property type="entry name" value="KDSR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="256" mass="27136" checksum="A6000C74B64FDC05" modified="2016-01-20" version="1">MTGCVFVFGGSEGIGLAVAARLVEDGREVVVLSRSESKLAAAVARLGPRASSRVVDVTSETGVREAVGALVADGKVPDLVVNTAGYARPGWLEDLPPDDVTGMVATNLLGTINVARAVLPHLRATRGTLVTTSSMAGLAGVFGYTVYSATKFGVIGFSEALRREVRPDGVRVLVLCPPNTLTPGFEEENRHKPAEVLAAEESVRTLTPEQVADELLRALRRRRGFLVVPGRDSRLAAVAIRHLPAVVDRALRRPVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHT7</accession>
    <name>A0A0Q8VHT7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02945</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892809.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56790">
        <property type="protein sequence ID" value="KRC56790"/>
        <property type="gene ID" value="ASE19_02945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1937748at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="113"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="215"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="278"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="339" mass="36662" checksum="ABD79044A9FA407D" modified="2016-01-20" version="1">MAAPDDLAAAERWFVEHGLPYFVDDYRAAVARGLRSGRLVPAVAVAVVLAAVAGLGTGLWLGVASALGAALTVFGVVLAVYAVAVLRAWLIVGWAVRRTFRSMGLMLPLVTRALPLLLLFITFLFINTEVWQVAASLDGGVLWVTVLLFAAIAIGFLLTRLPEELDSVDDEVEAQQLIEACAGTPLEPAARRIADRVDKVGAVDAEVAGLQKANLVLVLLVAQAVQVLLLALAVFAFFIVFGLVAMEPEVLELWLAHPVHALDGPIGHVFGERLSLELLRVSTFLAAFSGLYFTVYAVTDELYRRQFFSVVIRELERAVSARVAYRSLRDADPADEDRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHX8</accession>
    <name>A0A0Q8VHX8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_06035</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894073.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55001">
        <property type="protein sequence ID" value="KRC55001"/>
        <property type="gene ID" value="ASE19_06035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1445898at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="78"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="104"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="142"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="196"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="235"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="259" mass="26519" checksum="57B9D7288B9FDD10" modified="2016-01-20" version="1">MSDLTPQVLALLGLAAATAGFVDAVVGGGGLVQLPALLLGLPGASPVQVLATNKIASACGTAVSSATYYRRIRPDPRTFLPLMALALVGAFTGALAASRIPREAFEPIVLVALVVVGAYVLLRPELGEGTDLRFDGHRHLVAAMAVGFAIGLYDGVLGPGTGSFFVFALVGLLGYDFLQASAKARLANLATNIGALLLFIPSGAVLWDVGLLMGACNLVGGYVGARTAVARGARFVRVFFIVVVSAFIVRIGGGVLGLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHY2</accession>
    <name>A0A0Q8VHY2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07875</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895416.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53985">
        <property type="protein sequence ID" value="KRC53985"/>
        <property type="gene ID" value="ASE19_07875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1425704at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018750">
        <property type="entry name" value="DUF2306_membrane"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10067">
        <property type="entry name" value="DUF2306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="27"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="91"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="129"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="160"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="192"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="227"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="263"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="294"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="329"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="358"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="386"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="405" mass="42361" checksum="BF02AEBB16AE0D81" modified="2016-01-20" version="1">MAIATETTEARGCYNVAVSTSRTLPRIALGAVVLVAVGYFPLAFTSFWHFFDAGAPRLQDALQGRAAGHDFAYGHGSVVALRAEDYRAHRVVMLVHTSTGALALALATLQYSARLRRRPGVHRWTGRTYLLLMGVSMAAAYAFLLAAPQIAYFGGSAFDLQLWVLATSTVTSAAIALVAIRRRDLVSHRAWIGMNLAFMLTAPLLRLLWVGLGRLDHGIELMVGLDVGASTLGVVAPAGGAIAFLLTQPSRRVAPVADARRQYVAAAIVSVAGSCWLAARFAPLPAQVPGASLWIGHVVPATGLVVICLLGALRSARRGRGIAEGQWRALLWGAALATPSAALTTVLATPVYGTIDGFLAGTMVGASGPIVLAFLLVVRSASQAGLTSSTTSNSSRSAPVATGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI21</accession>
    <name>A0A0Q8VI21_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10535</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894772.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52839">
        <property type="protein sequence ID" value="KRC52839"/>
        <property type="gene ID" value="ASE19_10535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1932513at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046096">
        <property type="entry name" value="DUF6114"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19609">
        <property type="entry name" value="DUF6114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="136" mass="14693" checksum="F0C2F97D40F77A90" modified="2016-01-20" version="1">MRAAVVAGWLWFRAFRRTRPFWGGLWCILAGAWIVRSMFFSFVLAVSGGWSYSSGYILGGGLVLFGLVAWFAPHYRGLLGVLAVLLALAAFVAANLGGYLLGSVLGILGGSMVWAWGEKTPRRSRGGRRRAVVPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIC8</accession>
    <name>A0A0Q8VIC8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Protein tyrosine phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_11055</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the low molecular weight phosphotyrosine protein phosphatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894868.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52935">
        <property type="protein sequence ID" value="KRC52935"/>
        <property type="gene ID" value="ASE19_11055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2062716at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004725">
        <property type="term" value="F:protein tyrosine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006470">
        <property type="term" value="P:protein dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023485">
        <property type="entry name" value="Ptyr_pPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036196">
        <property type="entry name" value="Ptyr_pPase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017867">
        <property type="entry name" value="Tyr_phospatase_low_mol_wt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01451">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00719">
        <property type="entry name" value="LMWPTPASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00226">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52788">
        <property type="entry name" value="SSF52788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LMWPc" evidence="3">
        <location>
            <begin position="14"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="171" mass="18292" checksum="16431F629A85D570" modified="2016-01-20" version="1">MTASVPAPRSPGRYVVSVVCLGNICRSPMADVVLQARVADAGLDDRVEVLSAGTGDWHAGDRMDRRAAALLTSEGYDASRHRAQQVLPDWLDQHDLVLAMDQENLRDLRALGALAGAGPQRLRLFRDFDPAGPGDVPDPYYGGDAGFRGVLDMVERTADALVAQLAAVVPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJT9</accession>
    <name>A0A0Q8VJT9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_08550</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895530.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54098">
        <property type="protein sequence ID" value="KRC54098"/>
        <property type="gene ID" value="ASE19_08550"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="36"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="119"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="340" mass="36120" checksum="8D2DB41BEFCE4A7F" modified="2016-01-20" version="1">MNVRADAIRLAVFATVGALILVLLYLTLGETRLGPTKDYRVVMADASGLEAGDVVRVAGVRVGQVDGLSVADGGENLVEVAFHVEEDQPLTDATQVLVRYENLLGDRYLELQQPPGEGAPLAAGATIPVDRTTPALDLDVLLNGFRPLFRGLEPGQVNELASNLIATLQGRGGTVESLLARTGSLTNGLADDGKAITSLIDNLDVLLGSLDSRDAQLRQTIGKFRTLVSGLAKDKDPIAASVTSINQMAATLADLFHEGREPFKQTVIAVKDLAKLLNTNTRTLNKVLASLPGAYQTLDRIASHGNIFNFYLCSAQVAISGPGGKTIRTPVVRSQLERCN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK45</accession>
    <name>A0A0Q8VK45_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23575</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893945.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57739">
        <property type="protein sequence ID" value="KRC57739"/>
        <property type="gene ID" value="ASE19_23575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1829442at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="220"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="246"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="26548" checksum="56E85D0D7A1756F6" modified="2016-01-20" version="1">MLTGRTRLARPALAAGLALCVAAGLAGCGSDDGKDARDGKESTSPSPTESTSAPAAYLDVPDGVTLTEPGTALALGEEGVVAFQRRQDQIGVLAVTVERIERTTFQDSFVGWNVDDATAARTPYFVRVKVTNVGDTDLGGARLDNVVYANDGSTLEAPNYYTAQQQPLCVGGALPAVFANGASAELCQVYFVAPAQTLVSIDFPPYGGLDDITWTGELSPVTPLKPVKPGRKGGRKGAGKGAGATPSATATATASATATP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK48</accession>
    <name>A0A0Q8VK48_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">UPF0060 membrane protein ASE19_23705</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_23705</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the UPF0060 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893970.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57764">
        <property type="protein sequence ID" value="KRC57764"/>
        <property type="gene ID" value="ASE19_23705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1991345at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00010">
        <property type="entry name" value="UPF0060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003844">
        <property type="entry name" value="UPF0060"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36116">
        <property type="entry name" value="PTHR36116"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02694">
        <property type="entry name" value="UPF0060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="33"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="62"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="91"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC57764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="111" mass="11731" checksum="7324CB37C5652268" modified="2016-01-20" version="1">MDTLRSIALFLAAAVAEIGGAWLVWQGVREHRGWMWIGAGVVALGLYGFVATLQPDANFGRILAAYGGVFVAGSLVWGMVADGFEPDRYDVIGALVCLVGVAVIMYAPRSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKD6</accession>
    <name>A0A0Q8VKD6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Pyr_redox_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14720</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896927.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53575">
        <property type="protein sequence ID" value="KRC53575"/>
        <property type="gene ID" value="ASE19_14720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2049098at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="7"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="307" mass="31393" checksum="885677C26B2A61C3" modified="2016-01-20" version="1">MDNTSTYDVAVIGAGSAGLQAAQTLGRMHQRTLVLGTDRYRNDPTGHMHNFLGHDGAPPAELRTAGRKDAEAYDDVTFRDAEVTRISGSLGAFVLEVAGEESVHARRVLLATGVRDTLPSVPGIAGEFGDLIAHCPFCHGHEYAGTRVGVLGSAPHVAAMASMLRPIAGDLVVLTDGVALESATAESLERLGVPVEPAPLVAVRREGDGLVVELSGADPVALGGMIVKTDWALATPFAEQLGVELSEAGAVLVDAFGRTSVPGVFAAGDMAQGPGLPMPMASVLTAAAAGMVAAAGCVQDAALERIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKM9</accession>
    <name>A0A0Q8VKM9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04745</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54784">
        <property type="protein sequence ID" value="KRC54784"/>
        <property type="gene ID" value="ASE19_04745"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360122" evidence="1">
        <location>
            <begin position="19"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="152" mass="15853" checksum="9E08E754A7253980" modified="2016-01-20" version="1">MALVVGSVGALSAAPASAATQNGCSWSVPKPSVVDGKANFKLVVTCTTTMKFGTTPMREVVFDLVGDDVSFDDTIKWGWKEIPNSGTYTFDIKGWPCNEDAIGNDEIYVRVHTGTRTAAQIGAAATQGGLKPGQGYKMAAWTVGATASGACR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLY4</accession>
    <name>A0A0Q8VLY4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05205</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894404.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55137">
        <property type="protein sequence ID" value="KRC55137"/>
        <property type="gene ID" value="ASE19_05205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1989068at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="33045" checksum="DF1DDE8F739B6CDE" modified="2016-01-20" version="1">MRHRYECPLRWADVDMLGHVNNVRYVDYLQEARSALLRACLNAAGVERPEGGYVVVRHQVTFLAPLLFRSTAVSIESWVTEIRAGSFTLDHEIFHDTEDGGRVVYVRARTVLAPFMIETGAPRRISDAERTALAPYAELGERCRPVQVDVPRDDPAAHFPVHVRFSDLDIYRHVNNVMYFEYFQESRIAVFGRLREALREFPRINVVVAQTDMEYVAPITLRATPYDSWSVVTRMGNKSMVIDAEIVDGEQVLARSRNVLVFFDAATQTSVTPPPGYREAIIAALGGSLAESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM07</accession>
    <name>A0A0Q8VM07_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_05875</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894102.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55152">
        <property type="protein sequence ID" value="KRC55152"/>
        <property type="gene ID" value="ASE19_05875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1926714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="12"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="48"/>
            <end position="55"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC55152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="338" mass="35617" checksum="54BB5DBD00C17161" modified="2016-01-20" version="1">MEINSSKSGPVIRTVGLTRHYTRNKQTIEAVRGLDLEVAAGELVAFLGPNGAGKSTTLRMLTTLIAPTAGTATVAGHDVVRDRAAVRRSIGYVGQGNAAGHQFRGRDELMCQARAHGLSRRDARARTDELLDAFGLTEHADRPVAQLSGGQRRRLDVAIGLVQEPPILFLDEPSTGLDPQNRVNLQEQVRRLNADLGTTIVLTTHYLEEADALAGRVVVIDHGQVIADDSAAALKSALGDLVAMEFATAADARSAAERADRVEGAQVVVDGSRVELRAAFGRDAAPGLVADLAAAGTPVGRLEVAGPTLDDVFLNLTGRSLREDRNATTDATTEGAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMA2</accession>
    <name>A0A0Q8VMA2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_02495</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892731.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56713">
        <property type="protein sequence ID" value="KRC56713"/>
        <property type="gene ID" value="ASE19_02495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005543">
        <property type="entry name" value="PASTA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03793">
        <property type="entry name" value="PASTA"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00740">
        <property type="entry name" value="PASTA"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51178">
        <property type="entry name" value="PASTA"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="412"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="6">
        <location>
            <begin position="43"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="domain" description="PASTA" evidence="7">
        <location>
            <begin position="438"/>
            <end position="500"/>
        </location>
    </feature>
    <feature type="domain" description="PASTA" evidence="7">
        <location>
            <begin position="501"/>
            <end position="572"/>
        </location>
    </feature>
    <feature type="domain" description="PASTA" evidence="7">
        <location>
            <begin position="573"/>
            <end position="639"/>
        </location>
    </feature>
    <feature type="domain" description="PASTA" evidence="7">
        <location>
            <begin position="640"/>
            <end position="704"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="361"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="4">
        <location>
            <begin position="380"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC56713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="704" mass="75341" checksum="E797ABCC63837DBF" modified="2016-01-20" version="1">MHRRVAVHEDKRARGDAAARTGDPAGAARTEDHQYGRLLDGRYRIGPRIARGGMASVYEAVDTRLDRTVAVKIMHPGLGDATQDDDSFARRFVREAKAAARLSHPNVVAVFDQGRDESDGTTYLVMEYVPGHTLRDTISKEAPMSPERALAILDPVLSALASAHRAGLIHRDVKPENVLIADDGRIKVADFGLARAVSSETQHTATSGVLIGTVSYLAPELVVEQRADARADVYAVGVILFELLTGTKPHTGETPIAVAYRHVHHDVPLPSTVVPGIPAYVDALVARATTRDPSLRPSDATVLMHHVRRVVQALHDGVREDPELVADLLPTARAVEAAEEVGSDTTPEPVSSLWDGMPDLLPAPGREQTTVREQTTVIESGPPAPPPPTPRPSRPIPDDGGRPVQRRSRRGLALALVVVLLVAAVAAGGYWFGWGRYTSTPSVVGLEQAAAEAKLDDAGLGTDVEQVYSDSVEPGVVVSTDPRPGARILPGDDVTLTVSRGPEVYDVPDLAGLTVDQAEDRLAEVKMVLGRQVPKYSETVPKGQIVRSNPAFGTPAAKALPVSTAISVVVSKGKQPIKVGKWVGKDADKLEKALEKRGLQVKVTDTEYSDDIPEGHVISHTPASGVVYRGDKIELVVSKGPELVTVPSVRYMSTSAAIEKLEDLGFDVDKQKATIYLTGQVAWDTDPGSGTRVRKGSTVILYVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMC3</accession>
    <name>A0A0Q8VMC3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 14">Pyruvate kinase</fullName>
            <ecNumber evidence="5 14">2.7.1.40</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">ASE19_02085</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <reference evidence="17 18" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>ATP + pyruvate = ADP + H(+) + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:18157"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.40"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 14">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the pyruvate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.40" evidence="5 14"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892660.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56643">
        <property type="protein sequence ID" value="KRC56643"/>
        <property type="gene ID" value="ASE19_02085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1098983at2"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00188"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030955">
        <property type="term" value="F:potassium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004743">
        <property type="term" value="F:pyruvate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.33.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1380.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001697">
        <property type="entry name" value="Pyr_Knase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011037">
        <property type="entry name" value="Pyrv_Knase-like_insert_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018209">
        <property type="entry name" value="Pyrv_Knase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015793">
        <property type="entry name" value="Pyrv_Knase_brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015795">
        <property type="entry name" value="Pyrv_Knase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036918">
        <property type="entry name" value="Pyrv_Knase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015806">
        <property type="entry name" value="Pyrv_Knase_insert_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11817">
        <property type="entry name" value="PTHR11817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00224">
        <property type="entry name" value="PK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02887">
        <property type="entry name" value="PK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01050">
        <property type="entry name" value="PYRUVTKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50800">
        <property type="entry name" value="SSF50800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52935">
        <property type="entry name" value="SSF52935"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01064">
        <property type="entry name" value="pyruv_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00110">
        <property type="entry name" value="PYRUVATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12 14" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="9 14 17" id="KW-0418">Kinase</keyword>
    <keyword evidence="11 14" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13 17" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="14 17" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PK" evidence="15">
        <location>
            <begin position="1"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="domain" description="PK_C" evidence="16">
        <location>
            <begin position="360"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012142"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00018587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU000504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF00224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF02887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KRC56643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="487" mass="52549" checksum="876D37DA276CA990" modified="2016-01-20" version="1">MRRAKIVCTLGPATSSERRIRELVYAGMDVARLNMSHGSHADHAEVYRLVREASDASGHGVGILADLQGPKIRLERFSGGPTTLARGQRWTITTRDVDGNAEICGTTYKGLPGDVAPGDPLLIDDGKVRLRVVEVVDGTDVVTEVLVGGKVSNNKGINLPGVAVSVPALSEKDITDLRFALRLGVDFIALSFVRNAKDAEDVRVIMREEGIMLPVIAKIEKPQAIENLDEVVSAFDAFMVARGDLGVECPLEEVPFLQKKIIVAARRNAKPVIVATQMLESMITSPAPTRAEASDVANAVLDGADAVMLSGETGVGEHPIHTVETMARIISATEEHALVDDTFSRFGRIEWDPHTRGGVITKAAEEVAERVGAKYVVAFTQSGDSARRLARLRSSIPVLAFTPEARSRSQLAVTWGVEAFQTSTVEHTDEMVRQVDEELLRIGRVKEGDLVVIVAGSPPGIPGSTNALRIHRMGDAINEVAPAYRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQI5</accession>
    <name>A0A0Q8VQI5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896574.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59765">
        <property type="protein sequence ID" value="KRC59765"/>
        <property type="gene ID" value="ASE19_01735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="194"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="238"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="26906" checksum="464EC581D7A7E9F5" modified="2016-01-20" version="1">MATTITPAKVSPIRAKLTPLGSFFALAGDSLRAMFRRPFAVGEFLEQTVFIASVSFLPAIFVTIPFTVVVQFFINQLLQEIGATDLSGAGAGLVVIQELGPFCSVLVVAGAGATAVCADLGARKIREELDAMEVLGLDPMQRLVAPRILAFVVVALGLYGIVCVVGLIGTYVFAVTLGGASPGLFVSNLTLVTGFGSFVTAIIKTALFGVAAALVACHLGMNAKGGPKGVGEAVNQTVVLTLMVLLVINSTVTTVYLQLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQL0</accession>
    <name>A0A0Q8VQL0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">30S ribosomal protein S10</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpsJ</name>
        <name evidence="6" type="ORF">ASE19_06590</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Involved in the binding of tRNA to the ribosomes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the universal ribosomal protein uS10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_007078637.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55095">
        <property type="protein sequence ID" value="KRC55095"/>
        <property type="gene ID" value="ASE19_06590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2012682at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.600">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00508">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001848">
        <property type="entry name" value="Ribosomal_S10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018268">
        <property type="entry name" value="Ribosomal_S10_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027486">
        <property type="entry name" value="Ribosomal_S10_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036838">
        <property type="entry name" value="Ribosomal_S10_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11700">
        <property type="entry name" value="PTHR11700"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00338">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00971">
        <property type="entry name" value="RIBOSOMALS10"/>
    </dbReference>
    <dbReference type="SMART" id="SM01403">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54999">
        <property type="entry name" value="SSF54999"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01049">
        <property type="entry name" value="rpsJ_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00361">
        <property type="entry name" value="RIBOSOMAL_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 6" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Ribosomal_S10" evidence="5">
        <location>
            <begin position="7"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM01403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="102" mass="11603" checksum="9990AD3CE69267F9" modified="2016-01-20" version="1">MAGQKIRIRLKAYDHEVIDTSARKIVDTVTRTGAKVAGPVPLPTEKNVFCVIRSPHKYKDSREHFEMRTHKRLIDIIDPTPKTVDSLMRLDLPAGVDIEIKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQL3</accession>
    <name>A0A0Q8VQL3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Lon protease</fullName>
            <ecNumber evidence="5 6">3.4.21.53</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">ATP-dependent protease La</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">lon</name>
        <name evidence="13" type="ORF">ASE19_00795</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6 9">
            <text>Hydrolysis of proteins in presence of ATP.</text>
            <dbReference type="EC" id="3.4.21.53"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5 6">Homohexamer. Organized in a ring with a central cavity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="induction">
        <text evidence="5">By heat shock.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6 9 10">Belongs to the peptidase S16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.53" evidence="5 6"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896746.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59595">
        <property type="protein sequence ID" value="KRC59595"/>
        <property type="gene ID" value="ASE19_00795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="128102at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034605">
        <property type="term" value="P:cellular response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006515">
        <property type="term" value="P:protein quality control for misfolded or incompletely synthesized proteins"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01973">
        <property type="entry name" value="lon_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027543">
        <property type="entry name" value="Lon_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004815">
        <property type="entry name" value="Lon_bac/euk-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008269">
        <property type="entry name" value="Lon_proteolytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027065">
        <property type="entry name" value="Lon_Prtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003111">
        <property type="entry name" value="Lon_prtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046336">
        <property type="entry name" value="Lon_prtase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008268">
        <property type="entry name" value="Peptidase_S16_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10046">
        <property type="entry name" value="PTHR10046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05362">
        <property type="entry name" value="Lon_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02190">
        <property type="entry name" value="LON_substr_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001174">
        <property type="entry name" value="Lon_proteas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00464">
        <property type="entry name" value="LON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00763">
        <property type="entry name" value="lon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51787">
        <property type="entry name" value="LON_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51786">
        <property type="entry name" value="LON_PROTEOLYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01046">
        <property type="entry name" value="LON_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="evidence at transcript level"/>
    <keyword evidence="5 6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 5 6" id="KW-0645">Protease</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0720">Serine protease</keyword>
    <keyword evidence="4 5" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="Lon N-terminal" evidence="12">
        <location>
            <begin position="7"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="domain" description="Lon proteolytic" evidence="11">
        <location>
            <begin position="590"/>
            <end position="770"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 7 9">
        <location>
            <position position="676"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 7 9">
        <location>
            <position position="719"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <begin position="354"/>
            <end position="361"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR001174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR001174-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR001174-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC59595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="779" mass="83545" checksum="C22B869C7334D4A7" modified="2016-01-20" version="1">MTNPINLPVLFLSDVVVLPGMVVRVELDEPARAAIDAAQLASRESGEATRVLVAPRLEDRYASYGVVATVEKVGRFAGGEPAAVLKAGGRARIGSGVTGPGAALWVEVEEADAGPIDDDVQALADEYRQLVVGLLQRREAWQVADQVARIEDPATLADTAGYAPYLSDDRKRQLLETPEVRERLRLLVEWTRDHVAESEVSDKIDADVRESLEKNQREFLLRQQLAAIRKELGEGDAEGGDDYRARVEAADVPDAVREAMLREVDKLERASDQNPEAGWICTWLDTVLDLPWSVRTEDDTDIAAARAVLDADHHGLDEVKDRITEYLAVRARRAERGLEVVGGRGSGAVVLLAGPPGVGKTSLGESVATALGRKFVRVALGGVRDEAEIRGHRRTYVGALPGRVVRAIKEAGSMNPVVLLDEVDKVGSDYRGDPAAALLEVLDPAQNHTFRDHYLELDLDLSDVLFIATANDIGSIPAALLDRMELVSLDGYTEEDKVAIARDFLVPRQLERAALTADEVTISDEALREIAANYTREAGVRQVERLLAKAFRKATARLASGSVSRVDIDVASLKDLIGRPRFTPDLEERTSVPGVATGLAVTGMGGDVLYVETSVAEGKADLTVTGQLGDVMKESARIALSWVRSHAAELGIPASAFEQSIHVHFPAGAVPKDGPSAGVTMVTALVSLLTGRPVRSDIAMTGEVTLSGRVLPIGGVKQKLLAAQRAGVAEVFIPERNRPDLDDVPAEILEALTITPVGAVTEILERALVVAQEGATAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQM9</accession>
    <name>A0A0Q8VQM9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01495</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59722">
        <property type="protein sequence ID" value="KRC59722"/>
        <property type="gene ID" value="ASE19_01495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2076485at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="138" mass="15391" checksum="AD8BA6CDDB853520" modified="2016-01-20" version="1">MRQPDRAPGDLVMFLLSIVAVVIGVVAAVLSFPASQNKGTPGTFTAREESCDRHGGCWWDGTFVSDDGRTWSDESMKSQELHQNGDKVRAQRVNGEVFRRDSKAWVVFSVPATAALAYVIWFLRARTLFRRRTTRSGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQQ7</accession>
    <name>A0A0Q8VQQ7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01570</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896603.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59736">
        <property type="protein sequence ID" value="KRC59736"/>
        <property type="gene ID" value="ASE19_01570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="16"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="24277" checksum="761F5C7B778517D6" modified="2016-01-20" version="1">MVDGAKRVRRTRRAPFEVRDLVLKAASELFAERGYHGTKTREIAERAQVAEPVIFRNFGSKAEIFEASILAPFTAFAHAWAASWRAEPLAAADEYELTHTFVKGFYDLALEHREVLRTLVAARTKGGDPALAEVADRVVDQLAELLTLVRELLVEHRDARSWGIIDPPVTVAVAFGAILAVVVLDEWVFPAGERRPGRARQVEELTQMLLNGVAHREA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQV0</accession>
    <name>A0A0Q8VQV0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01835</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917916.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59784">
        <property type="protein sequence ID" value="KRC59784"/>
        <property type="gene ID" value="ASE19_01835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1694750at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="120" mass="12264" checksum="6D3E682780B0440C" modified="2016-01-20" version="1">MTVHVIRDEAATPRMLVVLVAPTHALRQCDAAVDNVVLAGAVTLTCEVDVSDRMLTSAVGEVLRTVDDAAADFPGLPIVIVGHGDAAGVASMAADACGDEISGLVLTHPRAQQDPTSHAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRA0</accession>
    <name>A0A0Q8VRA0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04090</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56989">
        <property type="protein sequence ID" value="KRC56989"/>
        <property type="gene ID" value="ASE19_04090"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360294" evidence="2">
        <location>
            <begin position="22"/>
            <end position="1208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="288"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="333"/>
            <end position="360"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1208" mass="129512" checksum="212796D6E4DAA2B7" modified="2016-01-20" version="1">MLAAAVALTTTQVVSAPAAHAEGEPITVITSPPLNVGIQPPPLIVQKTDPVGHSTPIIVDNPGGTAPTAKECIPLDTEQEMFCLGESGDMLYPSGTPMAPIVVTNGFTAPGELPGDQLDWIITEAYDTISDVHGVLNDDLVKAFARPEVRAAVASRIEVIINKKLYGEPMTPQEEAAFEAIEGYYKQNQVNSATAALAEYDAWDKNPCGYLPPAPPAGSGLPAVPNPVAGTAMCSAANKVDLFRITRNTPPAETFEKWGSYRHPRAMMRHANDPQVRYMTGKTRGAGIALSATAVLATAGVGVGISLSASIAVANAANALLLGEGAASGSSALFTSATAAVAGPAIIIVIALIILAVAIWQFDADLKPGEQITDRATQAVNNTDPLGVRARIGDYASLTHQDFLDRKDPAGQDPAVVHTQAFADGLEAQVADWMMFDQAGDVLPDPVLGYSPEASGPDDIHFAEGGNTLPSVDVAAPAGATNRDGQPVSTYRVLFSRNWLMVSERRTATGVWSPYRPRLTLEYVDPTGEIAQMSLLRHQEGDQPVKIDFQLIRPDLPVAERVTVAPLWTFSKPGGGTRTVGMLPFDLTLRPVNLVPSVQGILIADNVVRLSANLSTPGQGLPGSYAWTLERLDDDGTVAETIPLPAVASVTKRLTVAGRYRATPSYTVDGPPSFTRSGVIEFTMSPPAPEVLSAKIRDERVLDGSLFLDLRLLQATRTDTFTVDVEWANDARGDVVRKTYTVHCQDSGGDVPTCDTGAMIVPSSAPTNENWSESPTFRIPDDQDFLPQVTVKVTNGYGQVTTKSFPIEGDHRPSYDTMTPRVEMPAGTFSRVDVVEVFPSPLLVESQDLTIFPYVTTIASQLPEGVHPDIEERNGHWYLQIAGTPQADAIGSYTFYFPFEQEPLGKALRPAPALATVEIKAATQPGYRSVLRSTPTAFLDRQYRNVYPPYSVQVAEVLPTDEGDFGTFQGTVKCRLTAGPTVVFDKPCANNAPFPWPAEKVSDTMVASTYLESDTQQVSQDGPYEVDLFTKFVDPQVALVATSATRARFQLSLRDLNIVLPPYAGYTVKCSQDGGAYAACFADGFLSLLRRPGAHTLRVRVTAPDGATTTTTKPWTVATPKATFKVNVVQTAQKRGRQILVTGSRLLPGERYVITIGTRQVGTGVATSTGTVRRYVTVPKGIPLGPKTVKLRGATLQRFGTDTFRVIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSI7</accession>
    <name>A0A0Q8VSI7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA polymerase IV</fullName>
            <shortName evidence="3">Pol IV</shortName>
            <ecNumber evidence="3">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">dinB</name>
        <name evidence="5" type="ORF">ASE19_02435</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 3">Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="3">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the DNA polymerase type-Y family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893061.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57026">
        <property type="protein sequence ID" value="KRC57026"/>
        <property type="gene ID" value="ASE19_02435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="442163at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd03586">
        <property type="entry name" value="PolY_Pol_IV_kappa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01113">
        <property type="entry name" value="DNApol_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036775">
        <property type="entry name" value="DNA_pol_Y-fam_lit_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017961">
        <property type="entry name" value="DNA_pol_Y-fam_little_finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022880">
        <property type="entry name" value="DNApol_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001126">
        <property type="entry name" value="UmuC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00817">
        <property type="entry name" value="IMS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11799">
        <property type="entry name" value="IMS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100879">
        <property type="entry name" value="SSF100879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50173">
        <property type="entry name" value="UMUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3" id="KW-0234">DNA repair</keyword>
    <keyword evidence="3" id="KW-0235">DNA replication</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0515">Mutator protein</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="UmuC" evidence="4">
        <location>
            <begin position="1"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="5"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="site" description="Substrate discrimination" evidence="3">
        <location>
            <position position="10"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00025589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC57026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="413" mass="44421" checksum="A18D81C51325F340" modified="2016-01-20" version="1">MLHIDMDAFYASVMIRDRPELHEVPVVVGGGHRGVVLSANYPARRFGIRSGMSGTEARKLCPQAVTMPPDFAVLTPVSKAIMETFRTVTPVVEVTSLDEAFLDVRGAGRLFGSPEAIAERLRSRIRAEHGITCSVGIAATVSVAKLGSRLAKPDGVRVIAPDRFAAEVHPLDVGVLHGVGEATRQRLHRLGLMTVGDVAAVPVDQLRRMLGGHLGGHLHSLVWGTDRSELRPGGAGVFGFGEGEPEGSMGSQHTLAVDLTDRARLHRELLRLTSKVAARARSAGRVGRTVAVTVRFSDFTTVNRSRTLPEPTDVTQEVYDVAVSLLDTLLDAMAPRWPSVRLVGVRIEGLRRVRDGDSRQLALGERDPGWPDADRAVDLAAGRFGSSAVRRASLLSAADSSPRPPGWPVQAIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VV08</accession>
    <name>A0A0Q8VV08_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01265</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896658.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59683">
        <property type="protein sequence ID" value="KRC59683"/>
        <property type="gene ID" value="ASE19_01265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1571811at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016084">
        <property type="entry name" value="Haem_Oase-like_multi-hlx"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48613">
        <property type="entry name" value="SSF48613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="335" mass="36792" checksum="DC28E37F5DF64A24" modified="2016-01-20" version="1">MRVPEPCGPLSEGVVRALTHEPSGPRPVLERAVGDVLDPLTDRDLQLALWTLYELHYRGFDGVDPDAEWDPLLLVSRAAMERVFEHAVRALPTDADASAEQDVVMALTRMTVREGPSDLARFLERHATRDEFVEYLSLRAVHHLRESDPHSFVLPRLDGAAKVALAELQYDEYGSGRPDRLHQDLFARGLRSLDLSTDVSAYAEKADGATLASVNVMSLFCLNRRLRGAALGHLAAFEATSALPCDRIAKGAQRLGLPEVADYYEEHVVADAVHEQLAIRSICGTLVEAEPALAADVLLGATACLTLDGRAGQQALDGWRERRRHPRRTTVRAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXS2</accession>
    <name>A0A0Q8VXS2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Exodeoxyribonuclease 7 large subunit</fullName>
            <ecNumber evidence="5">3.1.11.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Exodeoxyribonuclease VII large subunit</fullName>
            <shortName evidence="5">Exonuclease VII large subunit</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">xseA</name>
        <name evidence="9" type="ORF">ASE19_00500</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates.</text>
            <dbReference type="EC" id="3.1.11.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5">Heterooligomer composed of large and small subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the XseA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.6" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896791.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59549">
        <property type="protein sequence ID" value="KRC59549"/>
        <property type="gene ID" value="ASE19_00500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1371775at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009318">
        <property type="term" value="C:exodeoxyribonuclease VII complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008855">
        <property type="term" value="F:exodeoxyribonuclease VII activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006308">
        <property type="term" value="P:DNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04489">
        <property type="entry name" value="ExoVII_LU_OBF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00378">
        <property type="entry name" value="Exonuc_7_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003753">
        <property type="entry name" value="Exonuc_VII_L"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020579">
        <property type="entry name" value="Exonuc_VII_lsu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025824">
        <property type="entry name" value="OB-fold_nuc-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30008">
        <property type="entry name" value="PTHR30008"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02601">
        <property type="entry name" value="Exonuc_VII_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13742">
        <property type="entry name" value="tRNA_anti_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00237">
        <property type="entry name" value="xseA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5 6" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3 5 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5 6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA_anti_2" evidence="8">
        <location>
            <begin position="13"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="Exonuc_VII_L" evidence="7">
        <location>
            <begin position="129"/>
            <end position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004355"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF13742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="411" mass="44488" checksum="0151D829ECA32432" modified="2016-01-20" version="1">MTLETSLEKPAPVRAIANAISGWIDRLGAVWVEGQVTQVSRRPGLNTVFLTLRDSVADISVPVTCSRVLFDGLAAPLQEGASVVIHARPSYYANRGTLSLQARDIRMVGLGELLARLEQRRQLLAAEGLFAQELKRPLPTLPARVGLVTAPNSAAERDVVENATRRWPAVAFEIAYAAMQGHRSAAEVIEAVRRLDAHPEVDVIVIARGGGSVEDLLPFSDEGLIRAVAAVRTPVVSAIGHEPDSPLLDLVADVRASTPTDAAKRVVPDMAQERARVVEARGRLRQAVLARLDREQAQLDAIRSRPALADPTTLLDARSGELDDWRARIRRQLEWQLDRAADDVHHHRARVQALSPLATLQRGYAVLQDADGHVVTSVHGVAAGAAVSVRVADGRVHATATETEPIEESHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXY9</accession>
    <name>A0A0Q8VXY9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_00900</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59613">
        <property type="protein sequence ID" value="KRC59613"/>
        <property type="gene ID" value="ASE19_00900"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="11"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="151"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="222" mass="23690" checksum="CE3E11B72DB2B951" modified="2016-01-20" version="1">MPNPLTTQPLRAVLAEDQALLRVGLTRILEAGGIEVVEAVDNAPSLARALARDDIDIAVVDVRLPPTHTTEGLEAATAVRAARPAFPVLVLSQWVEPLYARQLLAGGEGSIGYLLKDRVADVDAFLAAVQQVAGGGTVLDPEVVAALVSARSRPLDRLTEREREVLTLMAEGRSNAAIAARMVVTEKAVGKHTNNIFTKLDLPQASDDNRRVLAVLAWLDGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYR5</accession>
    <name>A0A0Q8VYR5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phosphate ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_00185</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59793">
        <property type="protein sequence ID" value="KRC59793"/>
        <property type="gene ID" value="ASE19_00185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015415">
        <property type="term" value="F:ATPase-coupled phosphate ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03260">
        <property type="entry name" value="ABC_PstB_phosphate_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005670">
        <property type="entry name" value="Phosp_transpt1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43423">
        <property type="entry name" value="PTHR43423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00972">
        <property type="entry name" value="3a0107s01c2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="17"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="49"/>
            <end position="56"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="270" mass="29416" checksum="87CB606247CF9E28" modified="2016-01-20" version="1">MTDVIAQRVGAGNAAELRADDITAWFGERKVLDRVSLTMPAGEVTALIGPSGCGKSTFLRILNRMHELVPSASLSGQVLLGDEDIYGPDQRVTHARRRIGMVFQKPNPFPAMSIYENTIASLALTGLKASKGEKDFLVEDSLRKASLWDEVKDRLHQPGGGLSGGQQQRLCIARAMAIAPEVLLMDEPCSALDPTSTRRVEETIAELRGQVTIVIVTHNMQQAARVSDRCAFFLAAMNTPGVIVEHGDTEAMFNSPRDPRTSDYVHGRFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYU5</accession>
    <name>A0A0Q8VYU5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AMP-dependent synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01655</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896879.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59825">
        <property type="protein sequence ID" value="KRC59825"/>
        <property type="gene ID" value="ASE19_01655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="164380at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="18"/>
            <end position="466"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="597" mass="63325" checksum="80BB29BBFB1EAA0F" modified="2016-01-20" version="1">MNDAPPTPLSAGTVPEAFQRTVAQHGDKVALRNIDGSVSLTWSELDARVRSIAAGLAAAGLGKGDTIAMLLPNTPECHQVDFAAVHLGAIPFAIFNSSPAEQIAHQLSNADARFVVTEQAFLPKVLEAASQLDGQIETVIVVDGEAEGTTSLAAVEAGADASFDFDAAWRAVTPDDLVTLIYTSGTTGPPKGAQWSHRTVMAEQRALDAALPLPVDGIISFLPMAHAGGRITAHYMSLGYGATITACPDMKEVPVALATSRPDAFFSVPRLWEKLQVAIEAMIAGQPDEQRVALQEVVDLGLERVRAVEAGSGVPADEAAALVERHDAILDRITPLLARLGLDNIKAAFVGGAPSSPELSQFFRAVGVPMLEAYGLTEGSLNVFNRVEDYKTGTAGKPLPGVEVKLAEDGELLCRAELNFSGYRKQPEATAEALDADGWLHTGDIATIDEHGFIKIVDRKKEIIITSAGKNMSPANIESAVRGESSLVGQVVAIGDARSYVTALITLDPEAAPVHAKNLGLEGLSLEELVASPVLLAEVEGIVDRANKRLHGNEQIKKFTVLGSAWLPDTDELTPTAKLKRRVIHVKYADEIEGMYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMJ2</accession>
    <name>A0A0Q8UMJ2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">30S ribosomal protein S16</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpsP</name>
        <name evidence="5" type="ORF">ASE19_20070</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the bacterial ribosomal protein bS16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895939.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46164">
        <property type="protein sequence ID" value="KRC46164"/>
        <property type="gene ID" value="ASE19_20070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1937072at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00385">
        <property type="entry name" value="Ribosomal_S16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000307">
        <property type="entry name" value="Ribosomal_S16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020592">
        <property type="entry name" value="Ribosomal_S16_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023803">
        <property type="entry name" value="Ribosomal_S16_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12919">
        <property type="entry name" value="PTHR12919"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00886">
        <property type="entry name" value="Ribosomal_S16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54565">
        <property type="entry name" value="SSF54565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00002">
        <property type="entry name" value="S16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00732">
        <property type="entry name" value="RIBOSOMAL_S16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 5" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="114"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="122"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="17836" checksum="8D4F28E3B001F606" modified="2016-01-20" version="1">MAVKIRLKRLGKVRVPQYRIVIVDSRKKRDGAVIEEIGKYHPKEDPSYIDVVSERAQYWLGVGAQPSEAVEAILKVTGDWQKFKGIDGAEGTLKVKEPKRDKLEVFNEALKEAANEPKGAAVTTKKKAEKKVEEAPVEAAAEETPAEEPAAEAEAPAAESTEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNA2</accession>
    <name>A0A0Q8UNA2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21885</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896243.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46474">
        <property type="protein sequence ID" value="KRC46474"/>
        <property type="gene ID" value="ASE19_21885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2133549at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="199" mass="23294" checksum="6ADEB41F4AD147F0" modified="2016-01-20" version="1">MTNERAKQDALDEYHRVVALHDEWYANGWPTDNEELETELGRQIRFDDFRNRSAAVRAAFDESLVEVIADASAAGIPQWMFTEFRGWLSHNDVRRLLERARKPYDVHPEDEWPQTATLKAVKADSARIALRDPVAALMLEKSARALLRRWAKEVPREPGEEAVRWVASRWRAEHVKKWKEARRKLLKDIDALGRTEVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNH4</accession>
    <name>A0A0Q8UNH4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Bmp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_22135</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the BMP lipoprotein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056918008.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46516">
        <property type="protein sequence ID" value="KRC46516"/>
        <property type="gene ID" value="ASE19_22135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="603910at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003760">
        <property type="entry name" value="PnrA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02608">
        <property type="entry name" value="Bmp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359242" description="Bmp domain-containing protein" evidence="4">
        <location>
            <begin position="26"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="domain" description="Bmp" evidence="5">
        <location>
            <begin position="54"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="23"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="367" mass="38244" checksum="E0A2C6E559A3F3A9" modified="2016-01-20" version="1">MRKTARIVAVATIAALSLTACGSREDDDKADDKSSTPTSSAPTEAAEQFPDFKACMVSDSGGFEDKSFNQTSKKGLDDAVAKYGMQEADAESTDPSQFADNIQSLIDAKCNQITTVGFLLGDDTLKKAKANKDVDFAIVDYAYFDDKGKNLAPANLQGLTFDTAQPSFLAGYLAAAKSQSGVVGTFGGLNIPTVTIFMTGFAQGVAYYNEENGKDVKVLGWDVDKKQGSFTDTFEDKGAGKSVAETQISQGADIIFPVAGPAGLGGLQAAKDAGKFAIWVDTDGCVSAAEYCDVLLTSVVKGMDVAVEAAILAAAKGETTNELYNGTLENGGVGLADFGPNADVDDELAAKIEDLKAKIISGEIKVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNM0</accession>
    <name>A0A0Q8UNM0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22535</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896351.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46582">
        <property type="protein sequence ID" value="KRC46582"/>
        <property type="gene ID" value="ASE19_22535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1551263at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359252" evidence="1">
        <location>
            <begin position="26"/>
            <end position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="408" mass="43970" checksum="C9178EF33129EE94" modified="2016-01-20" version="1">MRRFLRLLTAVALGAALVCAPSAGAAEATWLNVSGHDPLLNENGDGYWESATVTVTTDADAVHWSLLSAGGQAVAEADLTPDQLVTAHGPGGVALPISSATTGAPLPAGTYAFSVTATAAGKAPAAASTPIFVSTAPPLTALTPSAPTIYPRDTHPGVPHTIAFRHHLDTTITQSTSVMFQVLGPDDFVDGAWIVDGDEPLLRWNGMYQPPGGGMSLAPEGTYRIRILLSDGDHWADGPLSKPFTVSWDYRALVTTAITRPAAATRTATLTQRHARVRAVDGSLRYRAFNTSWRQEALARTAHRVGVPRNRVPGYPVLLVVRGRYQWDIDTDLEVVTPDGRVRDIDLFAAKDRRRLIYPIPRSLVRADGTFRFRLLWTSHGPTGAPGRTGRTDTVGVQYTRYVWRGPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNM2</accession>
    <name>A0A0Q8UNM2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Trehalose-phosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22580</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyltransferase 20 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896359.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46590">
        <property type="protein sequence ID" value="KRC46590"/>
        <property type="gene ID" value="ASE19_22580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="556566at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005992">
        <property type="term" value="P:trehalose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03788">
        <property type="entry name" value="GT20_TPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001830">
        <property type="entry name" value="Glyco_trans_20"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10788">
        <property type="entry name" value="PTHR10788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00982">
        <property type="entry name" value="Glyco_transf_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="479" mass="54179" checksum="9E1828DA64A126F4" modified="2016-01-20" version="1">MTTVAHDLVIVANRLPVDRVAGPDGRTTWRRSPGGLVSAIEPVMRAHDGVWVGWPGGTEQRLRAFKDDGLSLVPLSMTAEEIEEHYEGFSNGTLWPLYHDVVAKPEFHREWWDTYVKVNRRFAEKAADLAAKGATVWVHDYQLQLVPQMLRELRPDLRIGFYLHIPFPPAELFQQLPWRRQILEGLLGADLVGFQLPGAAQNFIRLVRQRVGHKTHRDLVYLPDGRTVRAAAFPISIDASGFEELARSEGVVERAAAIREALGNPRKIFLGIDRLDYTKGIYARLRAFGELISDGRVTVDDAVFVQVAVPSRERVEHYRNLRDDIERLVGRLNGDLGRIGRPAISYLHTSYPREEMAALYRAADVMVVTPYRDGMNLVAKEYVACRVDDDGALVLSEFAGAADELRQAWLVNPYDMNGMKGALLEAYEADPKELSKRMKAMRKQIAQHDVKAWADSFMTELEDESHHNHTKSLRPADRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNM5</accession>
    <name>A0A0Q8UNM5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">LytR_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_22555</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46586">
        <property type="protein sequence ID" value="KRC46586"/>
        <property type="gene ID" value="ASE19_22555"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027381">
        <property type="entry name" value="LytR/CpsA/Psr_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13399">
        <property type="entry name" value="LytR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="domain" description="LytR_C" evidence="3">
        <location>
            <begin position="100"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="57"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="187" mass="19145" checksum="D2E14E12612C9212" modified="2016-01-20" version="1">MAVTFPAWPARNERGAVLPSPVVLLSVVAVILAAVAFVTTRGDEPAERDISATTAAADPTDDASSDGTDAPSEGATTGAPTDTATTEAPAPKPVVRSEHSVVVFNNTAIAGLAGRVSEKVKEAGWTVAAADNWYGTVPATTVYFPKGKKAAAQLLALDLGVARIKPADTDSDMSDTKLTLILTGELD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNM6</accession>
    <name>A0A0Q8UNM6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">SSD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_22435</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896333.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46564">
        <property type="protein sequence ID" value="KRC46564"/>
        <property type="gene ID" value="ASE19_22435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="149255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="16"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="184"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="209"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="242"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="285"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="318"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="376"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="522"/>
            <end position="539"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="546"/>
            <end position="567"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="579"/>
            <end position="597"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="617"/>
            <end position="644"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="656"/>
            <end position="677"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="7">
        <location>
            <begin position="207"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="711" mass="74803" checksum="D2D785F2AAD35AD4" modified="2016-01-20" version="1">MHRQIAGKLTGPVTKWIVLVAVIVIAGGLASFAGKLIDVQNNETESWLPESAESTKAFQKLEAFQDPYDVGTTVVYYREAGLTPGDLAAIEEDAAEIAKLDGVSDVISPKGASSAGIPTPFVSEDGQVAKLEFTVNYGDKLWEELPDLKPEVDKIIKIDGVESYLAGAGGQSADAATIFSSGDGNLLLITLGVVILILLVTYRSPILWLLPILSAVVGLGASMGLLYFLAKNTSLTVNGQTQFILTVLVIGAGTDYALLLVARYREELRRHEDRHEAMAFALHRAAPAILASAATVVVGLLCLMFADLNSTAGMGPANAVGVAVTFVVMVTLLPALLVICGRWVFWPFVPRLGSKEPTASGLWARVGNAISPRPRIVWVGTAAVLAILCLGFLRLDTSGIPSDEQYTQDQDSVTGQTILIEHGLVDASTPIQVVANADKADAVVAAMEGVQGIAAPVKVAEKDGVALIVAELTSDPYSDKAFDAVHAVRAAVHDVPDADALTTGMSAVTVDIMDASSRDNKVIIPIVLGAVLLILIGLLRSIVSPVLLIGTVILSFGAALGISGLVFDFLYGREHTDPGFPLFAFVFLVALGIDYNIFLMTRVREEAAIHGTRKGSLIALASTGGVITSAGLVLAATFAMLGTMPMTFTLQLGTTVALGVLLDTIIVRSVLVTALNLDLGRKVWWPSKLDQAEASTEQPPAAEPDKVPAGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNP0</accession>
    <name>A0A0Q8UNP0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Probable nicotinate-nucleotide adenylyltransferase</fullName>
            <ecNumber evidence="6">2.7.7.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Deamido-NAD(+) diphosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Deamido-NAD(+) pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Nicotinate mononucleotide adenylyltransferase</fullName>
            <shortName evidence="6">NaMN adenylyltransferase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nadD</name>
        <name evidence="8" type="ORF">ASE19_19745</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP + H(+) + nicotinate beta-D-ribonucleotide = deamido-NAD(+) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22860"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57502"/>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <dbReference type="EC" id="2.7.7.18"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Cofactor biosynthesis; NAD(+) biosynthesis; deamido-NAD(+) from nicotinate D-ribonucleotide: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the NadD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.18" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896369.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46600">
        <property type="protein sequence ID" value="KRC46600"/>
        <property type="gene ID" value="ASE19_19745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1433958at2"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00332"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004515">
        <property type="term" value="F:nicotinate-nucleotide adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02165">
        <property type="entry name" value="NMNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00244">
        <property type="entry name" value="NaMN_adenylyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005248">
        <property type="entry name" value="NadD/NMNAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00482">
        <property type="entry name" value="TIGR00482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0520">NAD</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4 6" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CTP_transf_like" evidence="7">
        <location>
            <begin position="2"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="197" mass="21748" checksum="767D1470D8D724AC" modified="2016-01-20" version="1">MGGTFDPIHHGHLVAASEVQGWFGLDEVIFVPTGQPWQKADRDVSPAEHRYLMTVIATAANPRFTVSRVDIDRSGPTYTVDTLRDLRAERPDADLYFITGADALTDIFSWHDAEDAFDLAHFVGCTRPGADMDPATLAKIPHDRVTMVEVPALAISSTDCRERQRAGQPVWYLVPDGVVQYITKHGLYAPTTGTEPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNP4</accession>
    <name>A0A0Q8UNP4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">FO synthase</fullName>
            <ecNumber evidence="9">2.5.1.147</ecNumber>
            <ecNumber evidence="8">4.3.1.32</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="18" type="primary">fbiC</name>
        <name evidence="18" type="ORF">ASE19_22440</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <reference evidence="18 19" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the radical-mediated synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) from 5-amino-6-(D-ribitylamino)uracil and L-tyrosine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>5-amino-5-(4-hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil + S-adenosyl-L-methionine = 5'-deoxyadenosine + 7,8-didemethyl-8-hydroxy-5-deazariboflavin + H(+) + L-methionine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:55204"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:59904"/>
            <dbReference type="ChEBI" id="CHEBI:85936"/>
            <dbReference type="EC" id="4.3.1.32"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>5-amino-6-(D-ribitylamino)uracil + L-tyrosine + S-adenosyl-L-methionine = 2-iminoacetate + 5'-deoxyadenosine + 5-amino-5-(4-hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil + H(+) + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:55200"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:77846"/>
            <dbReference type="ChEBI" id="CHEBI:85936"/>
            <dbReference type="EC" id="2.5.1.147"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; coenzyme F0 biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">In the C-terminal section; belongs to the radical SAM superfamily. CofH family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">In the N-terminal section; belongs to the radical SAM superfamily. CofG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.147" evidence="9"/>
    <dbReference type="EC" id="4.3.1.32" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896334.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46565">
        <property type="protein sequence ID" value="KRC46565"/>
        <property type="gene ID" value="ASE19_22440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="419725at2"/>
    <dbReference type="UniPathway" id="UPA00072"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044689">
        <property type="term" value="F:7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01611">
        <property type="entry name" value="FO_synth_sub1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01612">
        <property type="entry name" value="FO_synth_sub2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019939">
        <property type="entry name" value="CofG_family"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045567">
        <property type="entry name" value="CofH/MnqC-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019940">
        <property type="entry name" value="CofH_family"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034405">
        <property type="entry name" value="F420"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020050">
        <property type="entry name" value="FO_synthase_su2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43076">
        <property type="entry name" value="PTHR43076"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19288">
        <property type="entry name" value="CofH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00293">
        <property type="entry name" value="((2_3_4_5-tetrahydroxypentyl)a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00294">
        <property type="entry name" value="7_8-didemethyl-8-hydroxy-5-dea"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03550">
        <property type="entry name" value="F420_cofG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03551">
        <property type="entry name" value="F420_cofH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00423">
        <property type="entry name" value="TIGR00423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="14" id="KW-0408">Iron</keyword>
    <keyword evidence="15" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="16" id="KW-0456">Lyase</keyword>
    <keyword evidence="13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="18" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="18" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Radical SAM core" evidence="17">
        <location>
            <begin position="63"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="17">
        <location>
            <begin position="530"/>
            <end position="771"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00003692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00010051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00010826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00012126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00012289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="KRC46565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="848" mass="91921" checksum="7CFBFD7621A34936" modified="2016-01-20" version="1">MTDGPTPQQVRRALARAERGAALDVAEAEALLAATGEELDRLCVVAARVRDAGLVAAGRPGVVTYSPKVFIPITKLCRDRCHYCTFVETPAQAAREGRAPYLSPDEILDIARQGAELGCLEALFTLGDRPEDRWPEAQAWLDEQGYDSTLAYIRAMAIRVLEETGLLPHLNPGVMTWEELNRLKPVSPSMGMMLETTSTRLFETKGEAHHGSPDKDPAVRLRVLEDAGRHGIPFTTGLLVGIGETLTERAETIFALRATTRAYGAVQEVIVQNFRAKPDTAMRHVDDLDLAEYRAAIAVTRIVLGPKTRIQAPPNLVDLTECKALLDAGIDDWGGVSPLTPDHVNPERPWPSLDRLRSITASCGFELKARLTVHPEYVVGSLQRGEAWIDPRLHAHVRALAAPDGLAVPEVRPTGLPWQEPDQALESAGRTDLFEAVDTEGRTADRRSDFASVYGDWDSVQEAASRTGLIDGAPAVLHAEGGDALRAAEADPGNLSDEHALTLMTASGALLESVVRLADDLRREVVGDPVTYVVNRNINFTNVCYVGCRFCAFAQRKTDADAYSLSYDEVADRAQEAWDLGATEVCMQGGIDPELPATAYFDIAAAVKKRVPGMHVHAFSPMEVVNGTARTGLSIEDFLIKAREAGLGSLPGTAAEILDDEVRWVLTKGKLPTSTWIEIVSTAHRVGLPTTSTMMYGHVDNPRHWVGHLNVLKGVQDKAQEFGSGGFTEFVPLPFVHTSAPIYLAGVARPGPTHRDNLAVHAMARILLHGRIDNIQTSWVKLGVEGTRAMLNAGANDLGGTLMEETISRMAGSEHGSAKTVAELEEIGAGIDRPVRERTTLYGVPARD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUG7</accession>
    <name>A0A0Q8UUG7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyoxalase_6 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18130</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893239.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48838">
        <property type="protein sequence ID" value="KRC48838"/>
        <property type="gene ID" value="ASE19_18130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041581">
        <property type="entry name" value="Glyoxalase_6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18029">
        <property type="entry name" value="Glyoxalase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyoxalase_6" evidence="1">
        <location>
            <begin position="81"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="189" mass="20242" checksum="62B47EF9819E0F3C" modified="2016-01-20" version="1">MFFENVVFDAADPHALGRAWEARLGTETLTDDAGGYETRLEVPGGPVLDLCFQPVAGATGEPGRLRLVVDETGERPVLAAITLDVADPAAERDFWAWLTGWVPVGAHGLQHPSSVGPVLELRAESAPKGARKNEIHLDVRLEAGDDADAVAREIAGRGGAELHLGFGDLPWRHFADPSGNEFCVLPYRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUM1</accession>
    <name>A0A0Q8UUM1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_18495</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CdaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893303.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48902">
        <property type="protein sequence ID" value="KRC48902"/>
        <property type="gene ID" value="ASE19_18495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1439158at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041522">
        <property type="entry name" value="CdaR_GGDEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17853">
        <property type="entry name" value="GGDEF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF_2" evidence="3">
        <location>
            <begin position="180"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_30" evidence="2">
        <location>
            <begin position="341"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="404" mass="44080" checksum="6EE29C5EE16ACD0C" modified="2016-01-20" version="1">MEYLDLSPDERAALAGAGRALLKRKSDMLEGLHSALERAVPGYLLVPERAEMESMEANLALLFTMLEHGAWKAGTPADALEAARLAARLGLTQVDLARIYHYGQDVLWNDFLAPALAVECSDADMLSRSSRVAFRVLSEFLTRVERDVSEQMRRELVTVGSPAERIDAVKSVLTGSDPGADLLGYPLLGRHLAFICWATPGDGADHATVLDAATAVARVLPARARLVVQASARTAYGWANVRPSEKVNTAHVESLLRERAMGVHVAIGTGTTGVNGFRAGHEEARIVFEHVSRGLRPAPSVTDYDRIALLSLLLADRDQAVTFARRQLGDLAGEGIELRQLRDTVRIYLGAHLSPLRTAQALHLHRNTVNNRIKRAEAMLGYPLADSRFELQAALTVLHSLEKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUR2</accession>
    <name>A0A0Q8UUR2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">NADH_4Fe-4S domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_18680</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the complex I 51 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893335.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48933">
        <property type="protein sequence ID" value="KRC48933"/>
        <property type="gene ID" value="ASE19_18680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="688908at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011538">
        <property type="entry name" value="Nuo51_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037225">
        <property type="entry name" value="Nuo51_FMN-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019575">
        <property type="entry name" value="Nuop51_4Fe4S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037207">
        <property type="entry name" value="Nuop51_4Fe4S-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01512">
        <property type="entry name" value="Complex1_51K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10589">
        <property type="entry name" value="NADH_4Fe-4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00928">
        <property type="entry name" value="NADH_4Fe-4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140490">
        <property type="entry name" value="SSF140490"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142019">
        <property type="entry name" value="SSF142019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADH_4Fe-4S" evidence="6">
        <location>
            <begin position="304"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC48933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="388" mass="39426" checksum="319A1AB11360B278" modified="2016-01-20" version="1">MTTTALPAATAERLLANPVPDGPIGRPDRRQLAALLAEAGLTGRGGAGFPTARKLGVLLARPGDRVVVVGNAMEGEPLSHKDAVLLQSAPGLVLDGLQVVARALGGARAILALGPQVPPGPARLAAAAPHRADLPVEVRTLAGGFVAGQETALVRALDGGPPLPRDRRDPMARRGADRLPRLVLNAETLAHVALLVRYGAGWWRATGTPDDPGTMLVTVSGSRSSVVPRPGVVETERGASITAVLARAGTDLAQVRAVLVGGYHGAWVPASALDLPLSRAGLAPWGATPGAGVLHALAREDCPLEAVARITAYLAGEGAGQCGPCVNGLPALARAVGAANAGRAAELASLVDGRGACAHPDGTARLVRSTLHVFADHVRAHAEGRCPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUV6</accession>
    <name>A0A0Q8UUV6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18970</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893383.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48981">
        <property type="protein sequence ID" value="KRC48981"/>
        <property type="gene ID" value="ASE19_18970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="685227at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01590">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GAF" evidence="1">
        <location>
            <begin position="95"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="388" mass="41685" checksum="14EFAB6572B3D855" modified="2016-01-20" version="1">MATHDLAMRARDLVRIHDAVLSGSAPPERPRAVVARSWSRVLGLGVDPDGRNGRDPLSPADVDARRRTSRLALVIDEIRELLLSAADASNYLVVVTDADGIVLWRSGSPRVKRQADGLGFAEGALWTERAVGTNAIGTALEEGTPVQLFSAEHFENAQVPWYCTASPIHDPIDGSLLGIVDVSGPALTLHPAIEALVTASVRLAEARLWRHHEERLEQLRRTAEPLLSGANGPLLVVDDHGWVAAHQGVSVRDRVEAPRADRAVAVPGLGLCVPERLRGGWLIRPSTGETVLRATLDRSTTPAMLEVRGVEAPWRVALSPRHADVLALLGAAGRGGLTAGVLSHRLYGDGEHQVTVRAEISRMRRALGALLATNPYRLGEGVELTIVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUZ4</accession>
    <name>A0A0Q8UUZ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19085</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893402.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49000">
        <property type="protein sequence ID" value="KRC49000"/>
        <property type="gene ID" value="ASE19_19085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2172284at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359456" evidence="1">
        <location>
            <begin position="32"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="174" mass="18216" checksum="436BBC63647D8C4E" modified="2016-01-20" version="1">MHLRSLIRLAVVAISLSIAGLAALPQAPSKAATSTATVVVPDGPVAARGICGNWKGAVAGYTGWATSKSECNVFGSSSTPAKPYQWGYTWQIPPYSNGRICVQGLGYKWSATKKKTVSTWVSLGCGTSGGGKVPWYGPKRTLNGKTYYLGVAATPKVRAKVQLGFLGGAYSWKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV28</accession>
    <name>A0A0Q8UV28_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Probable primosomal protein N'</fullName>
            <ecNumber evidence="9">3.6.4.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">ATP-dependent helicase PriA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">priA</name>
        <name evidence="11" type="ORF">ASE19_19380</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Component of the primosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the helicase family. PriA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.-" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893452.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49050">
        <property type="protein sequence ID" value="KRC49050"/>
        <property type="gene ID" value="ASE19_19380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1132322at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006269">
        <property type="term" value="P:DNA replication, synthesis of RNA primer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006268">
        <property type="term" value="P:DNA unwinding involved in DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1440.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00983">
        <property type="entry name" value="PriA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005259">
        <property type="entry name" value="PriA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041222">
        <property type="entry name" value="PriA_3primeBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042115">
        <property type="entry name" value="PriA_3primeBD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17764">
        <property type="entry name" value="PriA_3primeBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 9" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 9" id="KW-0347">Helicase</keyword>
    <keyword evidence="5 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 9" id="KW-0639">Primosome</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <keyword evidence="9" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="PriA_3primeBD" evidence="10">
        <location>
            <begin position="48"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="9">
        <location>
            <begin position="418"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF17764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC49050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="686" mass="72406" checksum="9DB40C9007DC99F0" modified="2016-01-20" version="1">MTPTPDEQALDLPGLVRDRAAEGRVKAAATRARKVAEAEIAEVDPVAQVVLDLALAHLDRTFDYAVPVAMADGAVPGARVKVRFGGQDVDGFVVARTAASEHEGRLAPLRRLVSPEPVLSPAVAALCAQVAERYAGVGADVRRLAVPPRHATTEKEPSPPEPPLAADAGACDAAWAPYPAASAFIAHLRSGSAPRAVWGAGPGEDWPHLLAELAASALAAGRGTVLCLPDHRDVARVDAALTALLGQGHHVTLQAEPGPAARYRDFLAVSRGTRRIVVGTRSAAFAPVRDLGLVVIWDDGDDLHAEPRAPYPHAREVLLLRSELEGAAALVGGFARTVEAEQLLRSGWAHEVALPRAELRHRALVGVTGASDHALARDPFASTARIPREAFEAVRWGLERGPVLVQTPRAGYAVKLACERCRTPARCGACAGPLELTGPTSPPRCRWCATEAPDWTCPECGSAGLRAPVLGDARTADELGRTFPSISVVTSSGDRIRASIDASPRIVVATPGAEPPAEDGYAVVVLLDTWWALSRDSMRAQEEALRRWCNAIGLVRPGGRALAVGDPALPVLQALVRWDPAGFATREAEERRAARLPPAARVATLTGTPGALDDLRALLALPEAADVLGPVPVPARASDEEAEERLVVRVPRAQGAALAHALGEAQRLRSARKLEPVRVQVDPPEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV46</accession>
    <name>A0A0Q8UV46_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21925</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S58 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896412.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46643">
        <property type="protein sequence ID" value="KRC46643"/>
        <property type="gene ID" value="ASE19_21925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2000083at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016117">
        <property type="entry name" value="ArgJ-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005321">
        <property type="entry name" value="Peptidase_S58_DmpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36512">
        <property type="entry name" value="PTHR36512"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03576">
        <property type="entry name" value="Peptidase_S58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56266">
        <property type="entry name" value="SSF56266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="373" mass="38807" checksum="26AD0F4811ECB25F" modified="2016-01-20" version="1">MTHPRARDLGIALGSFPPGPNNAITDVPGVRVGHCTLIEGDGTLAVGQGPVRTGVTVIEPRPEVWASPVFAGFHLLNGNGELTGLSWIQENGQLTTPVGLTNTHAVGVVRDAIATEIHRARVGEDHFFALPVVGETYDGTLNDINGGHVRPEHVERAFAALSGGPVTEGAVGGGTGMICHEFKGGIGTSSRVVPSIGRDYTVGVLVQANHGRRERLRVDGVPVGERIGKDVLPSPLDQEMAMAKAGSGSIIVVIATDAPLLPHQCTRLAQRGALAIGRTGGAGETLSGDIMLAFSTGNTGLPAMTLIEPEARTLPVQMATDPLVDRLFDATIDATEESILNAMLAARTMTGRDGITAPALDHDLLRAAMSAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UW88</accession>
    <name>A0A0Q8UW88_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22400</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896328.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46560">
        <property type="protein sequence ID" value="KRC46560"/>
        <property type="gene ID" value="ASE19_22400"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="51"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="96" mass="10499" checksum="6458970F7B3FC6C7" modified="2016-01-20" version="1">MSTHEQDATGRRTGWHPVNTGHLVMGVAFVGLVVVWALVTGDVVEIEHHGWMMGLPWLAAGAVGLVATVLRGARHHDHPDHPDHPDHRSGTMHGWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXY9</accession>
    <name>A0A0Q8UXY9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glycine cleavage system H protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">gcvH</name>
        <name evidence="6" type="ORF">ASE19_16205</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>(R)-lipoate</name>
            <dbReference type="ChEBI" id="CHEBI:83088"/>
        </cofactor>
        <text evidence="3">Binds 1 lipoyl cofactor covalently.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">The glycine cleavage system is composed of four proteins: P, T, L and H.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the GcvH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893618.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50150">
        <property type="protein sequence ID" value="KRC50150"/>
        <property type="gene ID" value="ASE19_16205"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005960">
        <property type="term" value="C:glycine cleavage complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019464">
        <property type="term" value="P:glycine decarboxylation via glycine cleavage system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06848">
        <property type="entry name" value="GCS_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00272">
        <property type="entry name" value="GcvH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003016">
        <property type="entry name" value="2-oxoA_DH_lipoyl-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002930">
        <property type="entry name" value="GCV_H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033753">
        <property type="entry name" value="GCV_H/Fam206"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017453">
        <property type="entry name" value="GCV_H_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11715">
        <property type="entry name" value="PTHR11715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01597">
        <property type="entry name" value="GCV_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00527">
        <property type="entry name" value="gcvH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00189">
        <property type="entry name" value="LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0450">Lipoyl</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="5">
        <location>
            <begin position="25"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-lipoyllysine" evidence="3 4">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR617453-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="129" mass="13354" checksum="298CE8B5EA17EFFA" modified="2016-01-20" version="1">MTNPADLKYTVEHEWLRSPGEAAGSVRVGITDFAQDALGDIVYVSLPEVGAAVTAGDACGELESTKSVSDVYAPVTGEIVAVNEALDATPELVNNDPYGAGWLFEVVPATPADVDGLLDAAAYEAQLDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYK3</accession>
    <name>A0A0Q8UYK3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TGc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17595</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893820.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48745">
        <property type="protein sequence ID" value="KRC48745"/>
        <property type="gene ID" value="ASE19_17595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="670657at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013589">
        <property type="entry name" value="Bac_transglu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002931">
        <property type="entry name" value="Transglutaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08379">
        <property type="entry name" value="Bact_transglu_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01841">
        <property type="entry name" value="Transglut_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00460">
        <property type="entry name" value="TGc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TGc" evidence="1">
        <location>
            <begin position="168"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="280" mass="30477" checksum="8191628351F7F2CD" modified="2016-01-20" version="1">MQLRIVHTSEYTYDGGAMASYNQARMTPVTTPEQIVVHHRLDVSPKPWTYSYTDYFGCAVTAFEVVDPHDSMAVTATSTVQVNRTGAEPEARSSWSSYAEREVRDRWTEYLVVSDVVAPPVDFAELVNDIGAGADLPGDAARAVCRLVTAQIDFLPGVTDAESTAAEAWGQRAGVGQDMVHLAIGGLRTLGIPARYVSGYVHPVDSPVVGETVVGSPFAWLEWWDDGWQPFDPTTDRSPGERYVAIGHGRDYADVPPLRGIYTGAETAALDVNVEITRLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ21</accession>
    <name>A0A0Q8UZ21_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">Glutamine synthetase</fullName>
            <ecNumber evidence="5">6.3.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_18515</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + L-glutamate + NH4(+) = ADP + H(+) + L-glutamine + phosphate</text>
            <dbReference type="Rhea" id="RHEA:16169"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.1.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the glutamine synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.1.2" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893306.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48905">
        <property type="protein sequence ID" value="KRC48905"/>
        <property type="gene ID" value="ASE19_18515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="416474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004356">
        <property type="term" value="F:glutamate-ammonia ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006542">
        <property type="term" value="P:glutamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008147">
        <property type="entry name" value="Gln_synt_b-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036651">
        <property type="entry name" value="Gln_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008146">
        <property type="entry name" value="Gln_synth_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027303">
        <property type="entry name" value="Gln_synth_gly_rich_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004809">
        <property type="entry name" value="Gln_synth_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027302">
        <property type="entry name" value="Gln_synth_N_conserv_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00120">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03951">
        <property type="entry name" value="Gln-synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01230">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54368">
        <property type="entry name" value="SSF54368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00653">
        <property type="entry name" value="GlnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00180">
        <property type="entry name" value="GLNA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00181">
        <property type="entry name" value="GLNA_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gln-synt_C" evidence="6">
        <location>
            <begin position="104"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-AMP-tyrosine" evidence="3">
        <location>
            <position position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR604809-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC48905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="473" mass="53224" checksum="0B26044CF29BDED1" modified="2016-01-20" version="1">MFNNSEELLKFIKDEGVEMIDVRFCDLPGIMQHFTVPTSSFDQSVFDDGLGFDGSSIRGFQAINESDMQLYPDPTTAYLDPFRKAKTLNVNFFIHDPITGEAYSRDPRNIAKKALAYLSSTGIADTAFFAPEAEFYIFDNVRYSTGVNEGYYHIDSVEGWWNSGKEEENNKGYKTRLKGGYFPVEPYDHYSDLRADMVKNLELCGLQVERAHHEVGTAGQAEINYRFDTLLKAADDVMKFKYLIKNTAWEQGKSVTFMPKPIFGDNGSGMHVHQSLWKDGSPLFYDETGYGGLSDMARWYIGGILQHAPALLAFTNPTVNSYHRLVPGYEAPISLVYSSRNRSASVRIPITGTNPKAKRIETRFPDPSANPYLAFSALMLAGLDGIQNKTEPAAPIDKDIYELPPDEMAEIAQVPTSLGAVLDALEEDHDFLTVGNVFTPDLIETWVDFKRANEIAPVQLRPHPHEFELYYDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ99</accession>
    <name>A0A0Q8UZ99_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22035</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896268.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46498">
        <property type="protein sequence ID" value="KRC46498"/>
        <property type="gene ID" value="ASE19_22035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2077178at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="85" mass="8907" checksum="120320AA889E0FD1" modified="2016-01-20" version="1">MHALAVTVVNALVDARVLAEDKAPDDNDVVAGWTAFWIFIGLIVAVAVIGVALTRSLRTAQKAKDAGVYGDEPAPSESDAADRTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZJ7</accession>
    <name>A0A0Q8UZJ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_19585</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0719 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896363.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46594">
        <property type="protein sequence ID" value="KRC46594"/>
        <property type="gene ID" value="ASE19_19585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1874412at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007140">
        <property type="entry name" value="DUF350"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03994">
        <property type="entry name" value="DUF350"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="46"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="74"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="116"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="137" mass="14029" checksum="CA7F945F8A677957" modified="2016-01-20" version="1">MLPALGYGIAYGLLGTLVLAAGWFVLDLLTPGRLGEHLRTSHSAGLVAATWMLAQGLIVFTAIWTNASSGFGDALVWTAAFSVLGVLLQTVAWRLVDLVTPGSLGEEVCVAGETQPLAKVTAGVIVAVALVVVASIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V157</accession>
    <name>A0A0Q8V157_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">MFS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_14855</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51372">
        <property type="protein sequence ID" value="KRC51372"/>
        <property type="gene ID" value="ASE19_14855"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359607" description="MFS domain-containing protein" evidence="6">
        <location>
            <begin position="39"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="46"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="78"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="103"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="135"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="165"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="196"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="221"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="273"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="307"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="339"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="363"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="405"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="431"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="7">
        <location>
            <begin position="12"/>
            <end position="458"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC51372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="460" mass="47123" checksum="4AB452A61A87E8F6" modified="2016-01-20" version="1">MRVRTQTEDRWRFATLAAVTVVTAVVSSLGAPLVPSIAERYDVPLATAQWILTATLIAAAAATPAFGRWGSGRLRRPVILGALTVVLFGCVLAALPLGMGPLIVGRACQGMGLAVAPLTLAVARDLWIGERLVSRLSLLSIATVAGAGLGYPFTGLVAEHAGISGAYGMGAVLVAGTLALAYRFLPRTAYGEPQHVDLASVVLVATGMVSTLLAVSQGESWGWASVRVVALTSAGLLLLTGWVARTLQVTRRGGQPLVDLRLAGRRGVLGPNAVAFALAIGMYGLLTVVVLLVRADGSAGWGLGRGAAAAGLVLVPYAVLSVTGSRVALRVARRFGPHLLLPIGSTVFASSMVLLAVRHDTLVQALVAMAVGGLGSGFTFSSLPSLIVPHVPPEETGSAMAFNQLLRYLGFSVGSAVTVALLQLYGGHEAAFRSTTLTMAGICLLAGCAVAVGGRSRPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1T1</accession>
    <name>A0A0Q8V1T1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896486.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51419">
        <property type="protein sequence ID" value="KRC51419"/>
        <property type="gene ID" value="ASE19_15140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1865374at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="45"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="23187" checksum="5258B7AB3F715C7C" modified="2016-01-20" version="1">MSTGRGTRGQRFFARWYPSVMGRAEEAGQAAIRARHLAHASGRTLDLGTGNGYSVPHYPPAVTELVMVEPNPALREQLQRRTQDIRARAWQILDGDAYDLPFADASFDTVSASLVFCSLERPEAALAELARVLRPGGSFLFHEHVRGTGLRRVLQEVATPLQVRVADGCHPNRDFLGMFRDSPFRVAEVEHLRMPGGAATVVPMVVGTAVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1V1</accession>
    <name>A0A0Q8V1V1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metallophosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15030</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896541.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51477">
        <property type="protein sequence ID" value="KRC51477"/>
        <property type="gene ID" value="ASE19_15030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="764005at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="134"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="486" mass="51364" checksum="6B31DC4378419771" modified="2016-01-20" version="1">MAWAALALTIAAVIFAGSERTVDLASHEATVSPDFSGEIVLRTGPVLPDLRAPSDTVLGLDIELGKTDTTSLQELMSRYAAIASQPDGQIAVVARAVRTMALAALVQGAALAALPFVLWFVVGRERWGVLLRGLPTGPGTIAGLLVLVLVAALVAPFTWGRQDPLPQRWMPLADFVGDDVPLPEQARDVEIMGDVTTGETQRLIASAVSSYQQGQAFYSKAADDAAALDLREPADDETVVLLVSDRHLNVGMDEVARAIGDRGGATAVLDAGDDTSTGERWEAFSLDSVSAAFDDLEERWAVAGNHDNGTFVRAHMTDLGWQYFDGTVLRGPGSSRILGVDDPRSSGLGNWRDETGLTSAEVAERLTEAACDADADGRRVNTLLVHDADFGDQALERGCVDLVVGGHTHVQDGPTAVTGSNGDVGWTYTVGTTGGAAYAIAIGSKLRRPAGVALITYRDGRPVGIQSVTLQTNGRYDVDPWVALTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2C7</accession>
    <name>A0A0Q8V2C7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17635</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893155.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48752">
        <property type="protein sequence ID" value="KRC48752"/>
        <property type="gene ID" value="ASE19_17635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1938183at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="73" mass="7925" checksum="07C09E04AFCA93FF" modified="2016-01-20" version="1">MTTAVAPSAQLTAEDRCDRCGAQAYLRVELTTGGELLFCAHHAREHGDRLREIAANVHDETHKLTDKPAPAAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3Y6</accession>
    <name>A0A0Q8V3Y6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16280</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50163">
        <property type="protein sequence ID" value="KRC50163"/>
        <property type="gene ID" value="ASE19_16280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1878940at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="231" mass="26062" checksum="D3E67A40625801BF" modified="2016-01-20" version="1">MTPPSPLIEPTVPPEPRWVWKRSTAQFLRAVRNVNKRRLVNAKHRVRFYRDDIVAARKSHVDVGVVIGRGTRMSEPSYLEPCTIGSYCAIGGRLIVRSGNHLMNYLNIEEDLQVRTIGAKSILGPREPVNIGNTVWIGDSVIILPGVQVGDGAIIGAGSVVTRDVPAYAFVAGAPARFIRWRYPEPVIEVITGFDWWNWDDDRLRRNRDLFEIDLDTVDPAELAERIRNAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V567</accession>
    <name>A0A0Q8V567_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NAD(P)H dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18200</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the WrbA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893251.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48850">
        <property type="protein sequence ID" value="KRC48850"/>
        <property type="gene ID" value="ASE19_18200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="796211at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003955">
        <property type="term" value="F:NAD(P)H dehydrogenase (quinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010089">
        <property type="entry name" value="Flavoprotein_WrbA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01755">
        <property type="entry name" value="flav_wrbA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50902">
        <property type="entry name" value="FLAVODOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin-like" evidence="2">
        <location>
            <begin position="4"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="198" mass="21055" checksum="ECA3F50E24509846" modified="2016-01-20" version="1">MVKLAIVYYSSYGTAHAMASRLAETAEKAGAEVRLRRVRETAPREVVEGVEAWAAHAASVADQPVAEPDDLAWADAVVMGSGTRYGHVTSQLQAFIDTLGPLWQEGALEDKVYAAFTSSSTPHGGQESTILAMLTTFCHFGGIIVPPGYTDDVKFRDGNPYGVGVVTEGQEGLTDTDHAALDHLVTRVLTVAEGLHLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5K7</accession>
    <name>A0A0Q8V5K7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Sugar ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_09885</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894660.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52725">
        <property type="protein sequence ID" value="KRC52725"/>
        <property type="gene ID" value="ASE19_09885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1200451at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015408">
        <property type="term" value="F:ABC-type ferric iron transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03259">
        <property type="entry name" value="ABC_Carb_Solutes_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015853">
        <property type="entry name" value="ABC_transpr_FbpC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="4"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="347" mass="35127" checksum="A0847820D0BAAA16" modified="2016-01-20" version="1">MTALEIRGLAAGYGRTTVLQGLDLTVAAGVTAILGSSGCGKTTLLRAVAGFVEPSAGSITVAGTPVVGDGRTVPARRRGLGYVPQEGALFPHLTVARNIAFGLPRATRRGASVAGVVEEALAMVELDPSTASRYPHELSGGQQQRVALARALAPRPSLVLLDEPFSSLDAGLREETGRAVVRALRAASAAAVLVTHDQGEALSLADQVAVMAAGQFLQVAPPATVYLEPADPRVASFLGHASLLPGTVDGEGSGTCALGVVRVRVAAGQGAGAAQLAVRSEQLQIRTDGSGTPGEVVDVSFFGHDATIRLRLASGEEVAARTPADSVPQAGDRVGVGVVGEVVAFPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5Z9</accession>
    <name>A0A0Q8V5Z9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">50S ribosomal protein L11</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rplK</name>
        <name evidence="11" type="ORF">ASE19_09775</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the ribosomal stalk of the 50S ribosomal subunit. Interacts with L10 and the large rRNA to form the base of the stalk. L10 forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex.</text>
    </comment>
    <comment type="PTM">
        <text evidence="6 8">One or more lysine residues are methylated.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uL11 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_036550298.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52710">
        <property type="protein sequence ID" value="KRC52710"/>
        <property type="gene ID" value="ASE19_09775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1702697at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00349">
        <property type="entry name" value="Ribosomal_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.250">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00736">
        <property type="entry name" value="Ribosomal_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000911">
        <property type="entry name" value="Ribosomal_L11/L12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036796">
        <property type="entry name" value="Ribosomal_L11/L12_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006519">
        <property type="entry name" value="Ribosomal_L11_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020783">
        <property type="entry name" value="Ribosomal_L11_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036769">
        <property type="entry name" value="Ribosomal_L11_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020785">
        <property type="entry name" value="Ribosomal_L11_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020784">
        <property type="entry name" value="Ribosomal_L11_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11661">
        <property type="entry name" value="PTHR11661"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00298">
        <property type="entry name" value="Ribosomal_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03946">
        <property type="entry name" value="Ribosomal_L11_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00649">
        <property type="entry name" value="RL11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46906">
        <property type="entry name" value="SSF46906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54747">
        <property type="entry name" value="SSF54747"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01632">
        <property type="entry name" value="L11_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00359">
        <property type="entry name" value="RIBOSOMAL_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0488">Methylation</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6 8" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L11_N" evidence="10">
        <location>
            <begin position="11"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L11" evidence="9">
        <location>
            <begin position="73"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003978"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC52710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="15152" checksum="DF0C77744309BD21" modified="2016-01-20" version="1">MPPKKKIAALVKVQLQAGSATPAPPVGTALGPHGVNIMDFCKAYNAQTESMRGNVIPVEITIYEDRSFDFITKTPPAAELIKKAAGLKKGSGVPHKEKVGKLTKDQVREIATTKLPDLNANDIDAAMKIVEGTARSMGVTIDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V685</accession>
    <name>A0A0Q8V685_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-oxoisovalerate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10995</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894856.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52924">
        <property type="protein sequence ID" value="KRC52924"/>
        <property type="gene ID" value="ASE19_10995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="900125at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033248">
        <property type="entry name" value="Transketolase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02780">
        <property type="entry name" value="Transketolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transket_pyr" evidence="1">
        <location>
            <begin position="4"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="325" mass="35254" checksum="05905BD5FECC516E" modified="2016-01-20" version="1">MVTMTVAKALNAGLRKALEDDEKVLVMGEDVGTLGGVFRITDGLQKDFGDDRIIDTPLAESGIVGTAVGLALRGYRPVVEIQFDGFVYPAYDQIVCQVARFHFRSQGRVKVPMVIRIPYGGGIGAVEHHSESPEAQFVHTPGLKVVTCSNPADAYGMLQQAIAADDPVIFLEPKRLYHSTKGEVDESAPLPPLWHSRVVRPGSDVTLVGYGPTMSTCLDVAAVAEEEGRSIEVIDLRTLSPLDLAPVIESVRRTGRLVVVHEAHQTLGLGAEVAARVTEECFHSLEAPVLRVGGYDTPYPAARIEEAWLPDLDRVLDAVDRTFGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6B0</accession>
    <name>A0A0Q8V6B0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidyl-prolyl cis-trans isomerase</fullName>
            <shortName evidence="1">PPIase</shortName>
            <ecNumber evidence="1">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_16265</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the cyclophilin-type PPIase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893628.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50160">
        <property type="protein sequence ID" value="KRC50160"/>
        <property type="gene ID" value="ASE19_16265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1861282at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000413">
        <property type="term" value="P:protein peptidyl-prolyl isomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002130">
        <property type="entry name" value="Cyclophilin-type_PPIase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044666">
        <property type="entry name" value="Cyclophilin_A-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45625">
        <property type="entry name" value="PTHR45625"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00160">
        <property type="entry name" value="Pro_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00153">
        <property type="entry name" value="CSAPPISMRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="SSF50891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50072">
        <property type="entry name" value="CSA_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0697">Rotamase</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006519182" description="Peptidyl-prolyl cis-trans isomerase" evidence="1">
        <location>
            <begin position="30"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="PPIase cyclophilin-type" evidence="3">
        <location>
            <begin position="93"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="23"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="34"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="243" mass="23946" checksum="D2A67F919E26A68B" modified="2016-01-20" version="1">MRSRLLAGVPALLLLATLSACSDDGDEKATDTSTDASSDSTGTPSDPATTETADGGAPGSASCTYTPDGSGGDVELPPATAAYSGKVGAKVTTSIGTLQFTLDADNAPCTVNSFLSLAGQGYYDGTSCHRLTVADGFKVLQCGDPTGTGAGGPGYAYADELSGSETYGSGTLAMANAGPDTNGSQFFIVYGDTGLPPSYTVFGTVDKAGLKAIDAAAAAGVTPAGAQDGAPVTPVKIESVKKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6I6</accession>
    <name>A0A0Q8V6I6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SMI1_KNR4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11550</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894950.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53020">
        <property type="protein sequence ID" value="KRC53020"/>
        <property type="gene ID" value="ASE19_11550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="751346at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018958">
        <property type="entry name" value="Knr4/Smi1-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037883">
        <property type="entry name" value="Knr4/Smi1-like_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00860">
        <property type="entry name" value="SMI1_KNR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160631">
        <property type="entry name" value="SSF160631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SMI1_KNR4" evidence="2">
        <location>
            <begin position="301"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="494" mass="51766" checksum="6E8064F0117807C0" modified="2016-01-20" version="1">MFGRRRREQARSTSESVGAAGPDNPDVVLAQTIARHFEGAEVSGSAAAIGLGGVIIDCRVDQLVPTNGQVAASLFFNISGGALGTAPIFASSSGYGTSDLEAIVEGGCAWSCSFGPVLRSALADEPEPDVDTFDVALDGRPFRAHVAALNRLMGTPGIGEPGDVIRRTREALVGDDRWLTRKVLDSGTLPLVSTATATVLSAFVMELSDHRTVEVKVNGREWVASNLDAFAGPHVGAEGTATLMRELAVLVPQGGRVARSVPFRRDSLQRTLDGFEPATAEPWRADGWQGWSAHRGALGRPLDVAEVRALEAAAGQLPPDYRAFLVDVAGSGAGPGYGLIRPAVVGDGVIPLAHAGCGVTWILRLDPDHRGEVWVDAAGADETFTQVAPTFSEWYDDWLESALRGGVWSQWDNSACATTGVLNQLITSLDERGELGPRPINLQGRIGPGGIALSLGAGYLPEGSAGDPCHPCVALASRFGLGPAIFSPGVLLQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6L3</accession>
    <name>A0A0Q8V6L3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">SGL domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_10785</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894820.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52888">
        <property type="protein sequence ID" value="KRC52888"/>
        <property type="gene ID" value="ASE19_10785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="966287at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001258">
        <property type="entry name" value="NHL_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013658">
        <property type="entry name" value="SGL"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01436">
        <property type="entry name" value="NHL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08450">
        <property type="entry name" value="SGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51125">
        <property type="entry name" value="NHL"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359749" description="SGL domain-containing protein" evidence="3">
        <location>
            <begin position="38"/>
            <end position="680"/>
        </location>
    </feature>
    <feature type="repeat" description="NHL" evidence="2">
        <location>
            <begin position="50"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="repeat" description="NHL" evidence="2">
        <location>
            <begin position="139"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="SGL" evidence="4">
        <location>
            <begin position="155"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="repeat" description="NHL" evidence="2">
        <location>
            <begin position="186"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="repeat" description="NHL" evidence="2">
        <location>
            <begin position="234"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="680" mass="68939" checksum="0F2ADA4FAAA9FF38" modified="2016-01-20" version="1">MSTVNAASRAGTRSRLILTSLLAGVSLLTGLLPAAWAAPSDPPVLVRTWGGSGAGEGQFDFPYGIAVGGASDVYVADTGNHRIQRFTAEGEFVGQWGGTDLLPAPVAVATDETGYVYVVDYYLGVLKFTASGASVASWGSHGSAEGQLSGALGIAVAPDGSVYVADSDNDRVQKFTSSGVFLAGWGSAGSADGQFSSPSGIAVDTSGKVYVVDTFNNRVQKFTSSGGFLARWNVEGDLDGGTVVPHGAAVDAAGNLYVADAFSSRIQQFSITGTLVSTWTVPNGTTTTAPFGVAVDATGGIYVSDFHGHVQKFVARDSVIVNTVPPAIVGTPSVGAQVASTSGSWDPAPTTFAYQWVVDGTVIAGATASTYTPGPADAGRALTVWVQARKDGREPRWAPSASKVVQAGVVSNVELPTIAGAAEPGGTLTAAAGSWTPSGTSPTYQWLRNGGAISGATANSHTLVAGDVGTTVSVRVTASKAGFAPASATSSGVVVSEQGGLPMTALSQPKVSGTPRVGVRLSASPGTWNPAGSYAYQWQANGSAISGATGSTYTPTAGVRGMRISVRVTASKGGYATGTATSAQTGAVAAGILTNSAAPSVTGTRHVGHVLTANRGTWTPGGLTYRYQWFRGSTAIKGATARTLKLPASTRGHKIRVRVTAARAGYTSLARYSAYTVAIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6M0</accession>
    <name>A0A0Q8V6M0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cobalt-precorrin-6X reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_17390</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893116.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48711">
        <property type="protein sequence ID" value="KRC48711"/>
        <property type="gene ID" value="ASE19_17390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1726104at2"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016994">
        <property type="term" value="F:precorrin-6A reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003723">
        <property type="entry name" value="Precorrin-6x_reduct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018126">
        <property type="entry name" value="SASP_alpha/beta-type_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36925">
        <property type="entry name" value="PTHR36925"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02571">
        <property type="entry name" value="CbiJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00715">
        <property type="entry name" value="precor6x_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51014">
        <property type="entry name" value="COBK_CBIJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00304">
        <property type="entry name" value="SASP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="244" mass="25679" checksum="7F010643F6CFD77D" modified="2016-01-20" version="1">MTGPRVLLLGGTGEARALAARLVDDGVPVVSSLAGRVVRPRLPVGDVRIGGFGGVPGLQAALADFDVVVDATHPFAAGISRNAAAACAAAGVPLLRLERPGWADRATPSWIWVATHEQAATVAGELGSRPFLTVGRQELARFVPALEEREVLARVVDVPDLEVPRAWEILTSRGPYTLDGERAVMADRDVLVTKDSGGELTWPKMEVAAELGIPVVVVRRAPAPDGVDTVRDVDAVVAWLRAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6V3</accession>
    <name>A0A0Q8V6V3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 14">Undecaprenyl-diphosphatase</fullName>
            <ecNumber evidence="4 14">3.6.1.27</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13 14">Bacitracin resistance protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12 14">Undecaprenyl pyrophosphate phosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">uppP</name>
        <name evidence="15" type="ORF">ASE19_16685</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>di-trans,octa-cis-undecaprenyl diphosphate + H2O = di-trans,octa-cis-undecaprenyl phosphate + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:28094"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60392"/>
            <dbReference type="EC" id="3.6.1.27"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="14">Cell membrane</location>
            <topology evidence="14">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="14">Bacitracin is thought to be involved in the inhibition of peptidoglycan synthesis by sequestering undecaprenyl diphosphate, thereby reducing the pool of lipid carrier available.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the UppP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.27" evidence="4 14"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893706.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50237">
        <property type="protein sequence ID" value="KRC50237"/>
        <property type="gene ID" value="ASE19_16685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1826154at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050380">
        <property type="term" value="F:undecaprenyl-diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016311">
        <property type="term" value="P:dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01006">
        <property type="entry name" value="Undec_diphosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003824">
        <property type="entry name" value="UppP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30622">
        <property type="entry name" value="PTHR30622"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02673">
        <property type="entry name" value="BacA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00753">
        <property type="entry name" value="undec_PP_bacA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 14" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="6 14" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14" id="KW-0133">Cell shape</keyword>
    <keyword evidence="14" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="8 14 15" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 14" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="88"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="118"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="186"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="225"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="259"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00021581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00032707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00032932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC50237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="280" mass="30273" checksum="C2394EECC59C5B57" modified="2016-01-20" version="1">MADFLQAVFLGILQGLTEFLPISSSAHLRIFPELFGWGDPGAAFTAVIQIGTELAVLLYFRKDIWRIARAWVLSLFKPEYRGALDARMGWYIIVGSLPIVILGVLFKDVIERDFRNLWLIGTTLVVMGIVLGVADRVGRTDRAIKQMTLRDAALMGGAQALALVPGVSRSGATLSMGRFLGYDREAATRFAFLLAIPAVVGAGVFELKEIANVGEAHAGEAAYGWGPTITATIVSFLVGYAAIAWLLKYVSTRSYTPFVVYRVLLGLGVFVLLGVGALNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Y4</accession>
    <name>A0A0Q8V6Y4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12200</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895061.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53134">
        <property type="protein sequence ID" value="KRC53134"/>
        <property type="gene ID" value="ASE19_12200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1351747at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359758" evidence="1">
        <location>
            <begin position="36"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="domain" description="Aldo_ket_red" evidence="2">
        <location>
            <begin position="23"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="331" mass="35343" checksum="B4C31A0973287431" modified="2016-01-20" version="1">MSTSSYTPSQRRLGRSGLVVSAVGLGCNNLGRTGAATESQRGTDRVVRAALDAGITFFDVADNYGATPGLAEERLGKALGTRRADVVVATKFGMDVGDLNGPDFGARGARRYVRKAVEGSLRRLGTDWIDLYQFHTPDPGTPIDETLSALDDLVREGKVRYVGHSNRSGWQIAQAEYVARELGVERFVSAQNNYNLTDRRAELEVLPASAELGLGVLPYFPLANGLLTGKYASGNAPEGSRLARTRQHLLEDAVSPTLQAYSAFAADRGVSEVTVAIGWLLAQHPVASVIAGATSVEQVAANAQADQWVPTAEDLAELDALFPAPERIALF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V785</accession>
    <name>A0A0Q8V785_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895023.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53094">
        <property type="protein sequence ID" value="KRC53094"/>
        <property type="gene ID" value="ASE19_11950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="275153at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018580">
        <property type="term" value="F:nitronate monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04730">
        <property type="entry name" value="NPD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004136">
        <property type="entry name" value="NMO"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03060">
        <property type="entry name" value="NMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NMO" evidence="1">
        <location>
            <begin position="23"/>
            <end position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="371" mass="39740" checksum="C7C0ACB6DB5FC7BB" modified="2016-01-20" version="1">MRTDVAKALDIEVPIFAFSHCRDVVAAVTKAGGLGVLGAAWMTPEELEMSIEWLEKEVDGKPFGVDLVFPGTGEDEKEADEYLASIPPSYMDFVTGMLDEAGLSDVAADDRDAFMADNAQKMTMTNEKSARQLKISLAHPSVRLIVGALGVTPKWVVEEAHAKGVMVGALVGSARHAAKQVEVGVDLLVAQGTEAGGSVGDVASMVLWPQVVEAAAGVPVLGAGGVSRGSHVLAALSLGCQGVWLGSLWLGTAEGELSLEARDKLFQAKSEDAVIAKVMTGKQGRMLRTPYVDAWQAPDAPSPLQWPMQSILNGYSYMRAERAHELDYWTYAVGQVIGDMQRSTTVKSEMTRLLDEYVEALEALETRTSLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7S3</accession>
    <name>A0A0Q8V7S3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13755</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897096.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53406">
        <property type="protein sequence ID" value="KRC53406"/>
        <property type="gene ID" value="ASE19_13755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2060858at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009937">
        <property type="entry name" value="Phage_holin_3_6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07332">
        <property type="entry name" value="Phage_holin_3_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="15103" checksum="BF0E3F6C98111371" modified="2016-01-20" version="1">MQHDVRERHDTTAEPTIGQLVSDLSTEVSQLVHDEMRLARVEMTEKAKGLGVGAGMFGAAGLLALYGGATLVATAVLALALVVDAWLAALIVTVALFGAAGVVALRGRHRVQVATPPLPTRAVENVQRDVAAVREAREHSHQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7U5</accession>
    <name>A0A0Q8V7U5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">Single-stranded DNA-binding protein</fullName>
            <shortName evidence="2">SSB</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_13830</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Homotetramer.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897083.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53420">
        <property type="protein sequence ID" value="KRC53420"/>
        <property type="gene ID" value="ASE19_13830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1942216at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04496">
        <property type="entry name" value="SSB_OBF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00984">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000424">
        <property type="entry name" value="Primosome_PriB/ssb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011344">
        <property type="entry name" value="ssDNA-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10302">
        <property type="entry name" value="PTHR10302"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00436">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00621">
        <property type="entry name" value="ssb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50935">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="118"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="195" mass="19649" checksum="262933651A2B8E45" modified="2016-01-20" version="1">MAGDTVITVIGNLTDDPELRFTPSGAAVANFTVASTPRQFDRQTNEWKDGETLFLRCSIWRQAAENVAESLQKGMRVIAQGRLVSRSYEDREGQKRTVNELQVDEVGPSLTWATAKVTRANRSGGGGGGGYGGGGNQGGGQGGFGGGGGQGGGARPAGGDPWGGQPSGGSNSGGGAPAGDPWAAPGVSGGDEPPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7W1</accession>
    <name>A0A0Q8V7W1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidase_M15_4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13170</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53302">
        <property type="protein sequence ID" value="KRC53302"/>
        <property type="gene ID" value="ASE19_13170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009045">
        <property type="entry name" value="Hedgehog_sig/DD-Pept_Zn-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039561">
        <property type="entry name" value="Peptidase_M15C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13539">
        <property type="entry name" value="Peptidase_M15_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55166">
        <property type="entry name" value="SSF55166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M15_4" evidence="2">
        <location>
            <begin position="332"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="42702" checksum="0A6FBCC529F03AC5" modified="2016-01-20" version="1">MLVAALASGCGSSGKDPEQGAPSKPAAASTKPAPKDSLDPAHAVSAPGRFDGTQYGDDLLLVSEDSLTDDDMEQLLSVTVGKGRDRKKGIAAYSKLAYGNFTTDGKFYNIAAVDPGQYRAFTGSRSAEFQEQWDRIAGGEIAIMDRLQKELPVDGDGYVDIGKQRIHVGAWSPAEVDAIDVMVNAKWGEELGLKSDNAVLINTGIASPQAVREVIEKRFGKKRFSITALDIVAQEGIDLGTFQTVVPVGAFSDAVGSFRYTPIGGGRIAPDPAWVRSHIVTEQVPILGSVTCNKYLIPQLRAALIEVVNRGLAKEIHANEYAGCYYPRFIAGSTKLSNHSFGLALDFNVPGNQRGTVGQMNREVVSIFKYWGFAWGGDWAWTDPMHFEMARIVNPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V814</accession>
    <name>A0A0Q8V814_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two-component system response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_13440</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895812.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53350">
        <property type="protein sequence ID" value="KRC53350"/>
        <property type="gene ID" value="ASE19_13440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="817710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="3"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="126"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="126"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="228" mass="24796" checksum="4ECBC09D9F539F8E" modified="2016-01-20" version="1">MAKVLVVDDDPTVREVAVSYLRAGGHRVADVGTGEAALAAMHAEGADLVVLDLMLPGIDGLEVCRRLRAQGEVPIIMLTALGEEADRVVGLEQGADDYVTKPFSPRELVLRVDSVLRRAGEPSRTRTEPVHDGALVVDGGSRVATIRGTPVALTAREFDLLHFLVSHPGIAHSREELLSEVWGWSFGDHSTVTVHVRRLREKVEADPTHPVHLVTVWGVGYRWEGFAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V833</accession>
    <name>A0A0Q8V833_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zn-dependent hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15805</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893550.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50082">
        <property type="protein sequence ID" value="KRC50082"/>
        <property type="gene ID" value="ASE19_15805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1581636at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="33"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="222" mass="23542" checksum="4983B341A81635FD" modified="2016-01-20" version="1">MTYTGEVTAGGAPDVRELAELTITKLAVDEKMSNNCYLLTCRSTGENLLVDAADQPESLFQLADGSLATIVTTHQHWDHHRGLASLVSLTGATTVAGGPDADAITEQTGVEVTRRVSDGDTVTVGSCSLEVIRITGHTPGSICLLYRDPAGHGHLFTGDSLFPGGVGNTFGDSAAFATLIDDVETKIFGALPDDTWFYPGHGNDSTLGAERPHVAEWRERGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V864</accession>
    <name>A0A0Q8V864_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_09030</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53589">
        <property type="protein sequence ID" value="KRC53589"/>
        <property type="gene ID" value="ASE19_09030"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="23"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="57"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="89"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="114"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="147"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="177"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="229"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="261"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="291"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="316"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="351"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="376"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="19"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="412" mass="42030" checksum="720ECD9EA2C15DC0" modified="2016-01-20" version="1">MSERAGAPVVDGHAPGSAGYRRVMAAMFAAGLGTFVLLYATQALLPELHTTFGVSPAQATLSVSLTTAGLALGLLVAGPASEVLGRTPLVVGSVWLATAVAWLCPFAWSWSSFLALRLVEGLALAGLPAVATAYLREELQPSAVARATGLYIGGTAIGGMAGRLVTAPVADVAGWRWAMAAAAALALLCALAVTVWLPPSRRFTPRPHDRARFLAMSGIALRDPALRSLYLLGACSVGTLVAVFNALGFRLTSSPYHLSLGAISLLYLVYPLGTVSSSVSGALADRFGRRSVLPFGCLLSVLGVLCTLLPSLPAVVVGLACLTAGFFVMHGLASSWVAVRAHLAGASSSQAAAFYLCSYYVGSSVFGSLGGTAWSAGGWGGVGVLALVLLGVAGAAVARLCRTPNLTVPHPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V875</accession>
    <name>A0A0Q8V875_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14455</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the adenylyl cyclase class-3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896971.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53532">
        <property type="protein sequence ID" value="KRC53532"/>
        <property type="gene ID" value="ASE19_14455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004016">
        <property type="term" value="F:adenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009190">
        <property type="term" value="P:cyclic nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07302">
        <property type="entry name" value="CHD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1230">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001054">
        <property type="entry name" value="A/G_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041664">
        <property type="entry name" value="AAA_16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13191">
        <property type="entry name" value="AAA_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00211">
        <property type="entry name" value="Guanylate_cyc"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50125">
        <property type="entry name" value="GUANYLATE_CYCLASE_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Guanylate cyclase" evidence="2">
        <location>
            <begin position="28"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="domain" description="Guanylate cyclase" evidence="2">
        <location>
            <begin position="307"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1200" mass="128473" checksum="8757FBFFDE2FC670" modified="2016-01-20" version="1">MLDPASYVPRLLRSRTPDAPPGWTHEATAVLVDLSGFTSLSEQLAARGRIGTEELIAELTTVFTALLTASDDGGDVVKFAGDALLVAYDGEDHAARACHAADAMRATLDRIGSVRLAGARARLRMSVGIHSGAYHCLLTGGVHRNLVLHGAAVDRLLELQDHARPGEILLSDETAAQLPPGWADAGRLVTTTTIAGQPARPEGTTDVAPYLPACFAERPDLLGAESDHRRAAMGFVQVALGEGDHAERIEELTAQVERACAETGATLLDTDLARGGFRYFLTAGAPVALEDPEGRLVQALLGIVGSDAGLRVRAGVAAGQVLAGSVGAPFRRTWTVMGDATNLAARLTARADDGTVLVHLPVLDRARLDVEADELRELALKGKAEPVEAAVVRRSRGHRERSTSDAAFVGREAELTELRTTVTRFADGADRAEGAVEVVGEPGIGKSRLVREALASVDLPLATITLDPYGAAVPHATTGRLLRTLLGIPLDATARDAGERLAGLVPHPWAPLVAAVVDAEVAMTDEVLELDKRFVVARTAAVVADVLRAHVAPTLVVIDDAQWADAASTELLQRVFAADLPMLVLLTRRDVDGGLRGTRSIALEPLAPALAGRLLSAASASALRPSEIELLVGRAVGNPLFLLELARAGSLATVPATVEELVAARVDALAAGDRDLLRRASVWGGRVPRALFERLAGGLPTERLADFLGVVDGDVVFHREVHREVAYEQLTFRRRRELHRAAAAVITDHADLVGSARLPMLSLHSFAGEDWPAAFAWSRDAAAAATERHAPQEAAEFCRRAITAGRRSGLGMPDLRELYVQEGAASVVLGSYADAARCYAVARRGVTDPELATSLTYELGMVRREDGHYEAALRAAHRARALARPLHGERRLEWSAEIDLLEAGVRYAQGRSADCLRVARRASETAARLAESPQRTRLLARAYALHDTAAVEIDGTDGEYGDLPLRMFEEIGDLYHLTRFAVNVGYALFYAGDWNGAVERWRLSLDIAERIGDVSNVAINEMNIGELLGYQGQLAEARELLERARATLIALDMPLAAAHAACFLGIVLRLAGDLEEADRRLSESAARFAEAGRHDGFIIDELATRQVEVMADRGRVVDALERATGLLARDDLTSLHRMRVCTTLATIDDGTVDAEHFREEALRLAAADPSPYDRALTLRALGSAEQQLEADQVLDGLGCV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8F6</accession>
    <name>A0A0Q8V8F6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 14">Pyruvate kinase</fullName>
            <ecNumber evidence="5 14">2.7.1.40</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">ASE19_11235</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <reference evidence="17 18" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>ATP + pyruvate = ADP + H(+) + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:18157"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.40"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 14">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the pyruvate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.40" evidence="5 14"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53630">
        <property type="protein sequence ID" value="KRC53630"/>
        <property type="gene ID" value="ASE19_11235"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00188"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030955">
        <property type="term" value="F:potassium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004743">
        <property type="term" value="F:pyruvate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.33.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1380.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001697">
        <property type="entry name" value="Pyr_Knase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011037">
        <property type="entry name" value="Pyrv_Knase-like_insert_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018209">
        <property type="entry name" value="Pyrv_Knase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015793">
        <property type="entry name" value="Pyrv_Knase_brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015795">
        <property type="entry name" value="Pyrv_Knase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036918">
        <property type="entry name" value="Pyrv_Knase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015806">
        <property type="entry name" value="Pyrv_Knase_insert_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11817">
        <property type="entry name" value="PTHR11817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00224">
        <property type="entry name" value="PK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02887">
        <property type="entry name" value="PK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01050">
        <property type="entry name" value="PYRUVTKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50800">
        <property type="entry name" value="SSF50800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52935">
        <property type="entry name" value="SSF52935"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01064">
        <property type="entry name" value="pyruv_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00110">
        <property type="entry name" value="PYRUVATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12 14" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="9 14 17" id="KW-0418">Kinase</keyword>
    <keyword evidence="11 14" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13 17" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="14 17" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PK" evidence="15">
        <location>
            <begin position="5"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="domain" description="PK_C" evidence="16">
        <location>
            <begin position="361"/>
            <end position="472"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012142"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00018587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU000504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF00224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF02887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KRC53630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="477" mass="51258" checksum="7265EFCF1DB92F8B" modified="2016-01-20" version="1">MPRGRRAKIVCTLGPATASERRIRALVDAGMDVARLNMSHGTHADHSEVYRRVREASEATGHAVAVLADLQGPKIRLRRFSSPAVLRRGQRWTITTREVDGNGEICATSYAGLPGDVRPGDPILIDDGKVRLRVVEVSETDVVTEVLVGGPVSDHKGINLPGVAVSVPALSEKDAEDLRFALHLGADVIALSFVRNASDAADVRAIMAEEGIEVPVIAKIEKPQAVENLDDIVRAFDGVMVARGDLGVECPLEEVPFLQKQIIVAARRNARPVIVATQMLESMITSPAPTRAETSDVANAVLDGADAVMLSGETSVGAHPITTVETMARIVAATERSALDEQHFGRFDRIEFDPHTRGGVITKAAEEVAERMGAAYVVAFTQSGDSARRVARLRSRIPVLAFTPDLKVRSQLALSWGVETFLTAPPVDTDHMVAQVDEELLRSGRVREGDLVVIVAGSPLGVPGSTNALWIHRIGQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8H2</accession>
    <name>A0A0Q8V8H2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14340</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896991.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53512">
        <property type="protein sequence ID" value="KRC53512"/>
        <property type="gene ID" value="ASE19_14340"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="118" mass="11862" checksum="52D499B143AA8F3B" modified="2016-01-20" version="1">MTSAQLSRRPAEPRLVDEPSVRLGLGGFALFAAAGLVAAIAPPAVPAATALVVLAAAWSLTLPRAQACLLGLAGWAFAEGFALHQYGELQLAPSDLALLGAAVLACLAASMVTAVGER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8H7</accession>
    <name>A0A0Q8V8H7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Potassium-transporting ATPase potassium-binding subunit</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">ATP phosphohydrolase [potassium-transporting] A chain</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Potassium-binding and translocating subunit A</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Potassium-translocating ATPase A chain</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">kdpA</name>
        <name evidence="10" type="ORF">ASE19_14330</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds the extracellular potassium ions and delivers the ions to the membrane domain of KdpB through an intramembrane tunnel.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">The system is composed of three essential subunits: KdpA, KdpB and KdpC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the KdpA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896993.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53510">
        <property type="protein sequence ID" value="KRC53510"/>
        <property type="gene ID" value="ASE19_14330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="296671at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008556">
        <property type="term" value="F:P-type potassium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030955">
        <property type="term" value="F:potassium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00275">
        <property type="entry name" value="KdpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004623">
        <property type="entry name" value="KdpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30607">
        <property type="entry name" value="PTHR30607"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03814">
        <property type="entry name" value="KdpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001294">
        <property type="entry name" value="K_ATPaseA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00680">
        <property type="entry name" value="kdpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0630">Potassium</keyword>
    <keyword evidence="3 9" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="62"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="137"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="176"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="252"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="280"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="367"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="413"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="476"/>
            <end position="501"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="522"/>
            <end position="544"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="552" mass="57162" checksum="E6F785DCE7E22994" modified="2016-01-20" version="1">MSDTLAGLLQVGALIAALGLCYVPLGTWMARVFTSERDLTVERGIYKVVGVDPRADQAWRTYALSLVAFSVAGLVLLYALQRLQSHLPWSLGFPDVAPDLAFNTAASFVTNTNWQAYSGEATMGHLVQMAGLAVQNFLSAAVGLCVAVALIRGFVRARTGRLGNFWVDLVRGVVRILLPLAVVAAVALVLLGVVQNLSGGVDATTLTGAHQTLPGGPVASQEAIKELGTNGGGFYNANSAHPFENPNPLSNVFEIFLLLLVPVCLTRTFGVMVGSVRQGYAILATMAVLWIVLLAAVWAIEAAHPSPAFDVAGAAMEGKETRFGIPGSSLFAVSTTGTSTGAVNSFHSSFSPVAGGLLILNMGLGEIAPGGVGTGLYGLLVLAILTVFIAGLMVGRTPELLGKKITAREIKLVALNILTMPLVVLGFTALALSLDGPRGSILNPGPHGLSEVLYAYMSGANNNGSAFAGLSANTPFYNITIGLAMLIGRFVPIVLTLALAGALARQTPVPRTEGTLPTHGPLFVGMLATVAVIVAGLTFFPALALGPLAEGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8N3</accession>
    <name>A0A0Q8V8N3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Maltose acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11680</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895197.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53642">
        <property type="protein sequence ID" value="KRC53642"/>
        <property type="gene ID" value="ASE19_11680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1878940at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016407">
        <property type="term" value="F:acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024688">
        <property type="entry name" value="Mac_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12464">
        <property type="entry name" value="Mac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01266">
        <property type="entry name" value="Mac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Mac" evidence="4">
        <location>
            <begin position="2"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="182" mass="19453" checksum="1C8AEBE282B22150" modified="2016-01-20" version="1">MRERMDAGEMYLADDPELVEAYLRAQELTEAYNATGVRERERRTSLLRELLGAIGEDTAIRPPFHVDYGTQIRIGARCFANFGLVALDVAAITIGDDVQLGPNVQLLTPIHPLEAGPRRDKWEAAKPITIGDNVWLGGGVIVCPGVTIGADTVVGAGAVVTKDLPAGVLALGNPARVVRSLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8W2</accession>
    <name>A0A0Q8V8W2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RHH_1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896952.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53551">
        <property type="protein sequence ID" value="KRC53551"/>
        <property type="gene ID" value="ASE19_14565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2044244at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002145">
        <property type="entry name" value="CopG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01402">
        <property type="entry name" value="RHH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RHH_1" evidence="1">
        <location>
            <begin position="9"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01402"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="75" mass="8421" checksum="B8BC124E3828FAE4" modified="2016-01-20" version="1">MTDILIRNVPDDDLRRIDEKARRLGLSRSEFLKRQIAQEAARDSSDDGATVDVFSRLADLAVDLASDEVMDDAWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V925</accession>
    <name>A0A0Q8V925_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07135</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895286.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53854">
        <property type="protein sequence ID" value="KRC53854"/>
        <property type="gene ID" value="ASE19_07135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2063007at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="17"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="122"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="153" mass="16129" checksum="944BEA624AFDF286" modified="2016-01-20" version="1">MAKGKVVKTVGSLGDYLKEQRVSSRLSLRQLADQAGVSNPYLSQIERGLRKPSAEVLQQIAKALRISAEQLYIRAGILSPDDGVGGSVELAILGDSGLTERQKQSLLDVYASFLALNAADAPEGADTVDGAEGSAPITTEIDPDSDDRTTNEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9A0</accession>
    <name>A0A0Q8V9A0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895284.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53852">
        <property type="protein sequence ID" value="KRC53852"/>
        <property type="gene ID" value="ASE19_07125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2058880at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019662">
        <property type="entry name" value="DUF2516"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10724">
        <property type="entry name" value="DUF2516"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="14"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="99" mass="10625" checksum="133A77DF13F5B4BD" modified="2016-01-20" version="1">MDAVFVPPASEAELWIMLGISFVLLAVKIFALVNALLYSSESYDAAGKLNKTTWCALLGVGLLLQLVPVPIGLVNLIMTIAALVYLADVRPALAGLRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9V5</accession>
    <name>A0A0Q8V9V5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Phosphoribosylaminoimidazole-succinocarboxamide synthase</fullName>
            <ecNumber evidence="8">6.3.2.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">SAICAR synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">purC</name>
        <name evidence="10" type="ORF">ASE19_07830</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + ATP + L-aspartate = (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate + ADP + 2 H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:22628"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58443"/>
            <dbReference type="ChEBI" id="CHEBI:77657"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the SAICAR synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.6" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895407.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53976">
        <property type="protein sequence ID" value="KRC53976"/>
        <property type="gene ID" value="ASE19_07830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1345271at2"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00131"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004639">
        <property type="term" value="F:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00137">
        <property type="entry name" value="SAICAR_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028923">
        <property type="entry name" value="SAICAR_synt/ADE2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001636">
        <property type="entry name" value="SAICAR_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018236">
        <property type="entry name" value="SAICAR_synthetase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01259">
        <property type="entry name" value="SAICAR_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00081">
        <property type="entry name" value="purC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01057">
        <property type="entry name" value="SAICAR_SYNTHETASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01058">
        <property type="entry name" value="SAICAR_SYNTHETASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SAICAR_synt" evidence="9">
        <location>
            <begin position="18"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="299" mass="32608" checksum="4380F89DCB88D630" modified="2016-01-20" version="1">MTLANIPPAPELPGTRHLHSGKVRDLYEVTEGAHTGKLLMVASDRLSIFDFVLETTIPDKGEILTRMSLWWFEQLASLVPNHVVSSDVPDAVRGRAVICERLEMFPVECVARGYLTGSGLLDYRASGEVCGIALPAGLEDGSRLPEPIFTPATKADLGDHDENVSYDAVVATVGADSAAALRDLTLQVYGRAEEIAREQGIILADTKFEFGVASAGGPIVLADEVLTPDSSRYWPADDWQPGRAQPSYDKQIVRNWALSAESGWDKASGEAPPPLPAEVIERTRSRYIEAYERLTGERF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA02</accession>
    <name>A0A0Q8VA02_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08405</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895506.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54074">
        <property type="protein sequence ID" value="KRC54074"/>
        <property type="gene ID" value="ASE19_08405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1884964at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="156"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="244" mass="26936" checksum="214067DC4EFF917E" modified="2016-01-20" version="1">MLDSRLLRPFVLCALVLLAGHLLGLVAREAYDVNPRIGIVRQFDLNAEGNLAAWFSSFLLLLSAGLCLLVARIRALRDEPLAGRWAAFAAFFLLMAIDETSQLHDLATRPVRNALGLDFGILYFAWLLPALLVVAAAAYWFRPLVAAMSDAVRPRLVIAAIVYLTGAVGFEMLGGEVVADGHYTLRYLLTMTCEESLEIAGGLLFLAALLAQVRELRPELVVRWTGPLPEVVELHERQPRTSER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBF0</accession>
    <name>A0A0Q8VBF0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">acidPPc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11310</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894910.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52979">
        <property type="protein sequence ID" value="KRC52979"/>
        <property type="gene ID" value="ASE19_11310"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036938">
        <property type="entry name" value="P_Acid_Pase_2/haloperoxi_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000326">
        <property type="entry name" value="P_Acid_Pase_2/haloperoxidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01569">
        <property type="entry name" value="PAP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00014">
        <property type="entry name" value="acidPPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48317">
        <property type="entry name" value="SSF48317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="129"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="160"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="acidPPc" evidence="2">
        <location>
            <begin position="54"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="221" mass="23030" checksum="056891C3CB4FCAEB" modified="2016-01-20" version="1">MSLDRLDRLGRPASEWAVDHGLVPFLHAVEVVLGQRPLVACAAVVAAVLLALRVRRAAALVALTTPATVVLTSALKTLVDRPRPPWQVTAHLLHSPAFPSGHTSGTTALVLSLVLATAAVARQRGWRPLVVRVASVAAVLVVALVGADRVLLGRHYPSDVLGGLLVGGAVAWGAAVLLGTGRRADQRRVARAAAARTARSAASDSAANQIAWTRTPLPVDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBQ6</accession>
    <name>A0A0Q8VBQ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Polyketide cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04300</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894371.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54709">
        <property type="protein sequence ID" value="KRC54709"/>
        <property type="gene ID" value="ASE19_04300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1746344at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030638">
        <property type="term" value="P:polyketide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009959">
        <property type="entry name" value="Cyclase_SnoaL-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07366">
        <property type="entry name" value="SnoaL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="138" mass="15002" checksum="8997D3EDF48CE959" modified="2016-01-20" version="1">MTDIGEIAKRFFEACEAGGGWEDCEQYCHPDATFRAQAAALEGVDSLPAYTEWMKGFFTPVPDGDAEISSLGVDAARNKVLVYGVFRGTHTGEGGPAAPTGKTLETDSVYEMTFDGGKIRHITKIWNDMASMQQLGWV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBT0</accession>
    <name>A0A0Q8VBT0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13195</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53305">
        <property type="protein sequence ID" value="KRC53305"/>
        <property type="gene ID" value="ASE19_13195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2042987at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="100" mass="11855" checksum="92C178FD8C095475" modified="2016-01-20" version="1">MSTMTWSETHRRWQALRAVEEELARTESPVLPWREEYAELFGDRAGLLAALRYRWELTVNTQMDTHLPERELEEHRLRLARRARGVLRVLVAEDVTRVVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCH8</accession>
    <name>A0A0Q8VCH8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05310</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894205.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54876">
        <property type="protein sequence ID" value="KRC54876"/>
        <property type="gene ID" value="ASE19_05310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="939031at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359902" evidence="1">
        <location>
            <begin position="33"/>
            <end position="514"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="514" mass="55518" checksum="68D958776AFC5CD8" modified="2016-01-20" version="1">MVAPSRLSRGVVAAAALLAAVVPIVVVPSASADDDGKQKVLTSSVARDERRVRANAALDRVEKIADGTASEAEKASYTIARRDLRVALRDLGRADQARAAAILARPATDQVLCSATTCVRWATGVATPQFAQLALTTVDQVRAKYQAAGYRAPLGDGTSGGDARTDVYLEDSGSEGLYGYCDSDDPKISTPGAVGFDVSAYCGLDNDFSTSQFPGNPTNNLKVTVAHEFFHAVQFAYDFLEDGWFMEGTAAWVEDEMYTAVNDNRQYLWTSQLRAPGRSLDLFGGGYHYGTWLFFRYLTERFPGKSGGLPSLVRRMWELADGAVGGPDYYSISAVAQALAERGTNLTTQYSRFAMANRSPRSFYREGAAYPKAVASSVVVRASRPNAPATARTLDHLTSATVRYVPSRTTARSWKLKLTLNMADRVRGSAAIVRVFYRSGAVKTINVALSSTGGGVVRVPFSTRTVLSVEVTMANASRRFYGNTCFSYETPLSCGGATPMDDNLRQVVDPVAYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCN7</accession>
    <name>A0A0Q8VCN7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Ketol-acid reductoisomerase (NADP(+))</fullName>
            <shortName evidence="8">KARI</shortName>
            <ecNumber evidence="8">1.1.1.86</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Acetohydroxy-acid isomeroreductase</fullName>
            <shortName evidence="8">AHIR</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Alpha-keto-beta-hydroxylacyl reductoisomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ilvC</name>
        <name evidence="12" type="ORF">ASE19_05580</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>(2R)-2,3-dihydroxy-3-methylbutanoate + NADP(+) = (2S)-2-acetolactate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:22068"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:49072"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58476"/>
            <dbReference type="EC" id="1.1.1.86"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>(2R,3R)-2,3-dihydroxy-3-methylpentanoate + NADP(+) = (S)-2-ethyl-2-hydroxy-3-oxobutanoate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:13493"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:49256"/>
            <dbReference type="ChEBI" id="CHEBI:49258"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.86"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 2/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 8">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 2/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8 9">Belongs to the ketol-acid reductoisomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.86" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894157.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54924">
        <property type="protein sequence ID" value="KRC54924"/>
        <property type="gene ID" value="ASE19_05580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="188901at2"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00056"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004455">
        <property type="term" value="F:ketol-acid reductoisomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00435">
        <property type="entry name" value="IlvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013023">
        <property type="entry name" value="KARI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000506">
        <property type="entry name" value="KARI_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013116">
        <property type="entry name" value="KARI_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014359">
        <property type="entry name" value="KARI_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21371">
        <property type="entry name" value="PTHR21371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01450">
        <property type="entry name" value="IlvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07991">
        <property type="entry name" value="IlvN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000116">
        <property type="entry name" value="IlvC_gammaproteo"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00465">
        <property type="entry name" value="ilvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51851">
        <property type="entry name" value="KARI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51850">
        <property type="entry name" value="KARI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 8 9" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="12" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 8 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 8 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0521">NADP</keyword>
    <keyword evidence="8 9 12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KARI N-terminal Rossmann" evidence="10">
        <location>
            <begin position="2"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="domain" description="KARI C-terminal knotted" evidence="11">
        <location>
            <begin position="183"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="25"/>
            <end position="28"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="227"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010318"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC54924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="341" mass="36788" checksum="39B8A73DB7BB6CF1" modified="2016-01-20" version="1">MAEIFYDDDADLSLIQGKNVAVIGYGSQGHAHALNLRDSGVDVRVGLRPGSKSIAKAEEEGLKVLPVAEAVEEADVIVILAPDQFQRTIYAEDIEPHLAAGDTLVFGHGFNIRFGYIKAPEGVDVIMVAPKAPGHTVRREYVAGRGIPDIIAVEQDASGKAWDLAKSYAKGIGGTRAGVIKTTFTEETETDLFGEQAVLCGGVSQLIQYGYETLTEAGYQGEIAYFEVLHELKLIVDLMWEGGIAKQRWSVSDTAEYGDYVSGPRVIDPSVKANMQAVLADIQSGAFAERFIADQDAGAPEFLELRAKGAAHPIEAVGKTLRGHFSWKQQDDDYTEGSAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDG8</accession>
    <name>A0A0Q8VDG8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07105</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53849">
        <property type="protein sequence ID" value="KRC53849"/>
        <property type="gene ID" value="ASE19_07105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="24542" checksum="C92C28ACE6AC15E2" modified="2016-01-20" version="1">MTSLTIPHRFNGPPRSGNGGWVSGALAARLPGQGIGRAVTVTLRMPPPLEVPLPVTATAAGAVLTHDGRPVAEASYAGLAPTPVAPVPVKRAAEAEASYAGHRVHPFPTCFVCGPDRRPGDGLRIFPGPVGDREHVAATWTPYESSVPLAWAALDCPGGWSSDLEGRPSVLGRITVEVRRVPRTSERYVVVGEQRLVEGRKTLTAATLYGPGDDVVATAEHVWIAIDPEEFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDY6</accession>
    <name>A0A0Q8VDY6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Multidrug MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_10405</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894750.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52817">
        <property type="protein sequence ID" value="KRC52817"/>
        <property type="gene ID" value="ASE19_10405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1108236at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004638">
        <property type="entry name" value="EmrB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00711">
        <property type="entry name" value="efflux_EmrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="56"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="86"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="111"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="144"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="174"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="206"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="231"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="273"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="308"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="338"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="361"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="462"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="20"/>
            <end position="484"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="490" mass="51971" checksum="019D1EA2980F6195" modified="2016-01-20" version="1">MTQSAPPTSTQTEVSNPWPALWALVIGFFMILVDLTIVTVATPTIIEDLDASVNDVVWVTSGYMLAYAVPVLIMGRLGDRFGSKNLYLVGLTVFTLASLWCGLTSTVEALILARVVQGFGASMMTPQTMAIITRIFPPASRGSAMAVWGATAGVAMVVGPILGGLLTDGLGWEWIFFVNIPFGIIAFTMAWRLVPALPTHAHRFDWLGVALSGAAMFLLCFGIQEGHQEDWAGWIIAMITGGLVLFVVFVVWQRLNRAEPLVPLSLFKDRNFSVSNVAIACMGSIAAAFGFPLMLFAQAVRGYSPTEAALLMLPMAVMSIFLAQPIGKLTDRVHPRSVTGAGFGISLVGFLLLLWRLEPDVAIWEIGLAMAIIGIGNAAIWAPTAATANRNLPMQLAGAGAGVYNATRQVGSVLGAAAIAVLMDSRLAHFLPGAAAHGDAGAAKIADPHAAELFSRAMQDSLWLPAAMYAVGLVAVMFYEAPKHAGYGGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEI0</accession>
    <name>A0A0Q8VEI0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_07965</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895435.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54003">
        <property type="protein sequence ID" value="KRC54003"/>
        <property type="gene ID" value="ASE19_07965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1968136at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002656">
        <property type="entry name" value="Acyl_transf_3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043968">
        <property type="entry name" value="SGNH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01757">
        <property type="entry name" value="Acyl_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19040">
        <property type="entry name" value="SGNH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="173"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="200"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="235"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="327"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="366"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl_transf_3" evidence="2">
        <location>
            <begin position="11"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="domain" description="SGNH" evidence="3">
        <location>
            <begin position="458"/>
            <end position="682"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="697" mass="74952" checksum="D92D5E13F779A8F1" modified="2016-01-20" version="1">MVNGDGHRTRTDIQGLRAIAVAMVVVYHLHHPLLPGGFVGVDVFFVISGFLITAHLISRPPRRPRDLADFWGRRIRRLLPASLLVLSCTLVAAWLVAPETQWEATARDVQLAAVYVLNWGLAGQAVDYLAADNVPTAVQHFWSLSVEEQFYFIWPLLIAGTVLAARRRPRATTTALAATLGTVVVASFVFSVARTASDPAAAYFITPTRIWELGTGGLVALLVSHRALPVTDARLRAIGSWVGIAMMVVTGFLYSSATPFPGYQAALPVLGTALVIACRPDADLPFSPGRLLALSPVRWLGDVSYSVYLWHWPLIVLAPDVLGHEPGWRALVVIAALTLVLAAASERIVERPFRSSSLVRFRRTTYLSAVAAMGVVLTLGSVVIHQVRDTEGRDRQQLAEALRNGGPCFGAAALDAGQDCAPTAYDELVPSPALAAKDKSKAYPDIGGRNCWSFTPRFPDKRCTFGDPDSTVTIALVGNSHAGHWLPALERIADEHGWRIQTYLASQCAFSEIAQAFDTDAHSQACLAWVTRTAAALVRDAPDLVVTSNRVSVRAAGQSDLASSLPAYADGFRSVFGTLLDAGLPVIDIRDTPATRMATPTCIADAGDDYAECDGTRGDWLPADPSVDVVAELDSPRLRLVDLTDHICDGDTCRVVNGGVITYFDASHLTATYAYTLGPYLAPPIEAMLAGAQDKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH23</accession>
    <name>A0A0Q8VH23_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phosphonoacetate hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_02850</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the YjdM family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892791.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56773">
        <property type="protein sequence ID" value="KRC56773"/>
        <property type="gene ID" value="ASE19_02850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1507972at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004624">
        <property type="entry name" value="YjdM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013988">
        <property type="entry name" value="YjdM_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013987">
        <property type="entry name" value="YjdM_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30305:SF3">
        <property type="entry name" value="PTHR30305:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03831">
        <property type="entry name" value="YjdM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08274">
        <property type="entry name" value="YjdM_Zn_Ribbon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00686">
        <property type="entry name" value="phnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YjdM_Zn_Ribbon" evidence="3">
        <location>
            <begin position="5"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="YjdM" evidence="2">
        <location>
            <begin position="50"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="119" mass="12357" checksum="B5801424E8A30AC7" modified="2016-01-20" version="1">MTDGLPACPECSGEYTYEMGELMVCPECAHEWSPAEAAAAADEAASAGVVRDANGNPLADGDDVIVVKDLPVKGAPKPIKSGTKVRSIRLVSGVGDHDIDCKVDGFGPMQLKSTVVRKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH63</accession>
    <name>A0A0Q8VH63_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03145</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56821">
        <property type="protein sequence ID" value="KRC56821"/>
        <property type="gene ID" value="ASE19_03145"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="73" mass="8022" checksum="925E82AE762CC34F" modified="2016-01-20" version="1">MAYARPVGKDKKKSQGKQKLPKTKCCVSKSKCGRCPLRMLKEGTLPDGFTVKRRVLVTTSGKKVTKKALQKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH84</accession>
    <name>A0A0Q8VH84_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Glutamate synthase</fullName>
            <ecNumber evidence="6">1.4.1.13</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">gltD</name>
        <name evidence="6" type="ORF">ASE19_02090</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.1.13" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892661.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56644">
        <property type="protein sequence ID" value="KRC56644"/>
        <property type="gene ID" value="ASE19_02090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="671513at2"/>
    <dbReference type="UniPathway" id="UPA00139">
        <property type="reaction ID" value="UER00341"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004355">
        <property type="term" value="F:glutamate synthase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006537">
        <property type="term" value="P:glutamate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028261">
        <property type="entry name" value="DPD_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006005">
        <property type="entry name" value="Glut_synth_ssu1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14691">
        <property type="entry name" value="Fer4_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01317">
        <property type="entry name" value="GOGAT_sm_gam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0314">Glutamate biosynthesis</keyword>
    <keyword evidence="2 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="41"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="489" mass="52809" checksum="C6BC93FA5D831962" modified="2016-01-20" version="1">MADPKGFLKNTREVASRRPVDERVGDWNEVYPGGIGRALLPIISVQASRCMDCGIPFCHSGCPLGNIIPEWNDLVWRDDWEGAIERLHATNNFPEFTGRLCPAPCETACVLGINQPAVTIKNIEVSIIDKAFESGFVRPQPPEWLSGRTVAVIGSGPAGLAAAQQLTRAGHTVAVYERADKPGGLLRYGIPEFKMEKKHLDKRLEQMKREGTVFRSGVEVGRGNLTGTALKDRYDAVVIAVGSTVPRDLPVPGRELKGIHQAMEFLPQANRVALGEEVEGQIRADGKHVVIIGGGDTGADCLGTSTRQGATSITQLEIMPQPTEDRPDGQPWPTYPMTYRVSSAHEEGGERVYAVSTKEFLGDDEGNVRALRLVEVSFEGGKLVEHEGTEREIPADLVLFAMGFVGPEQPGLVEQLGVELDERGNIKRDNDYATNVDGVFVAGDAGRGQSLIVWAIAEGRAAAAGVDKFLTGSTRLPAPIPPTARPLVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHE7</accession>
    <name>A0A0Q8VHE7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ArsR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03660</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AHA1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892927.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56910">
        <property type="protein sequence ID" value="KRC56910"/>
        <property type="gene ID" value="ASE19_03660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2055578at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013538">
        <property type="entry name" value="Activator_of_Hsp90_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017517">
        <property type="entry name" value="CHP03083_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017520">
        <property type="entry name" value="CHP03086"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024344">
        <property type="entry name" value="MDMPI_metal-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08327">
        <property type="entry name" value="AHSA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11716">
        <property type="entry name" value="MDMPI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03083">
        <property type="entry name" value="TIGR03083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03086">
        <property type="entry name" value="TIGR03086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MDMPI_N" evidence="2">
        <location>
            <begin position="153"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006817"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="324" mass="34100" checksum="B3120293384DC2A2" modified="2016-01-20" version="1">MTYSKTVALPVTPDEAFALVTRPDRLRRWMTVTARIDLRAGGDWRWTVTPGNVAAGTVAEVEPGRRLVLDWGWDQMPGDDGALGTVTITVEPADGGSTVTLVHEGLSAEQEVSHAEGWNHFLGRLELAAAKGDAGPDEWAAAPDPIDELVSAEACLAVLQQVLRQVGDADGDRPTPCAEFTVDQLVDHLLDSLVSFGTMAEAELVRPSGADLEDTVSILAAEVIEAWRRRGLDGMARSPFGEAPAPVLAGIVSIELLLHAWDLARAVGATITVSDALAEYVAGLAANVVPGARGRAFAEEVAAPVDADALTRLAAYSGRVVDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHI1</accession>
    <name>A0A0Q8VHI1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DM13 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04760</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894294.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54787">
        <property type="protein sequence ID" value="KRC54787"/>
        <property type="gene ID" value="ASE19_04760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1709958at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019545">
        <property type="entry name" value="DM13_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10517">
        <property type="entry name" value="DM13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51549">
        <property type="entry name" value="DM13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360047" description="DM13 domain-containing protein" evidence="2">
        <location>
            <begin position="27"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="domain" description="DM13" evidence="3">
        <location>
            <begin position="63"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="158" mass="15754" checksum="5070122637C1FBF7" modified="2016-01-20" version="1">MRIRNLTSVVLLTAALTLSACGSDDGDTSSTAESSTGATTSPSTGTSADTDTSTDTSTGERTGTFEGLNGKSVAGTVTVTADAVSLAGFSSDEGPDLHVYLTNGTDEAAVSAGKEVDAIAYDEASQSFTLDGIDPGSYTDVVIHCDKAKAVFGAAPLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHR1</accession>
    <name>A0A0Q8VHR1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Phosphate transport system permease protein PstA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_07520</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895353.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53921">
        <property type="protein sequence ID" value="KRC53921"/>
        <property type="gene ID" value="ASE19_07520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1763210at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035435">
        <property type="term" value="P:phosphate ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005672">
        <property type="entry name" value="Phosphate_PstA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00974">
        <property type="entry name" value="3a0107s02c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="46"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="79"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="129"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="171"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="201"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="253"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="319"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="8">
        <location>
            <begin position="133"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="351" mass="37089" checksum="E5B7CD2273EB8F6B" modified="2016-01-20" version="1">MTTVQEVQERVHIPLVHPRLPRTAPVIVAGIAVALGLLLLVLGMGLVPAVVIAAVAHLVVLPLWSVFVEGRRGATDRMMTGLIWATFLVAVVPLVSLLWRVVAKGAGRIDGTFLSYSFFKTQVDQPVGIYHAIIGTLIITIGAAVISVPVGVMAAIYLVEYGKKNKLAKAITFLVDVMTGIPSIVAGLFAFAVFTLVFGPAYVSGFGGSVALSLLMIPIVVRATEEMLMLVPDDLREAAYALGTPKWKTIVRIVLPTALGGILTGITLATSRVIGETAPLLLIAGATDRTNMNPFDGAMTTLPVLIYGQNLRGDAPAEAIAWGAAFILIIIVMVLNLVARIVGKIFAPKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIA2</accession>
    <name>A0A0Q8VIA2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_09730</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895154.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53602">
        <property type="protein sequence ID" value="KRC53602"/>
        <property type="gene ID" value="ASE19_09730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="41"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="122"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="351" mass="38278" checksum="2D06B55BFD2ECB2A" modified="2016-01-20" version="1">MRGLDKRTSADLIRLVIFMVTTALATGVLIITIGNLSFGPKTEYAAQFVDATGVNKGDDIRIAGVKVGSVQKVEVLNADRALVTFQVDSDTVINDATHATIKYRNLLGQRYISLTQSGDAGTKLKEGGQIPTGRTKPALDLTLLFNGFKPLFEALSPDDINKLSYEVVQVFQGEGGTLEGLLSSTASITQTLADRDQVIGDLLENLDYVLDHVADRDQQLTRLIDSFRSLVGGLNEDREAILSSLDSISELSVQTASLVTDIKDPFVKDIKELRAVTTTLDKNRKEIDRALQVLPIKLRKIGRTATYGSWFNFYLCHFTTTILVPGKGADPPPLTIPINAPRCSLAKEVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIW4</accession>
    <name>A0A0Q8VIW4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PepX_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11960</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53095">
        <property type="protein sequence ID" value="KRC53095"/>
        <property type="gene ID" value="ASE19_11960"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008239">
        <property type="term" value="F:dipeptidyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005674">
        <property type="entry name" value="CocE/Ser_esterase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000383">
        <property type="entry name" value="Xaa-Pro-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013736">
        <property type="entry name" value="Xaa-Pro_dipept_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02129">
        <property type="entry name" value="Peptidase_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08530">
        <property type="entry name" value="PepX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00939">
        <property type="entry name" value="PepX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00976">
        <property type="entry name" value="NonD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PepX_C" evidence="1">
        <location>
            <begin position="329"/>
            <end position="559"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="565" mass="62384" checksum="D7E84A332FCF5B91" modified="2016-01-20" version="1">MGQQVDDLDRASCSSVLVDFDVPARMRDGVVLRADIYRPAGEGSWPTLVVRTPYGKGSITENAWNGVSPTEAARRGFLVVVQDVRGRFASDGVWEVLRHEGHDGADTIAWAARLAGSNGRVGMVGGSYCGNTQWQAAIEQPPALKAITPLLTWADPRDGLVSRGGAMELAIATSWPLAQGFDWMTRLGLPDDELGERAGTLIRDYDRLTDEGLWDLPVTALPVMQRHAPPLFVELDAVNDFEATNHLAITGHERVEVPTLQTAGWFDALLKGTLDNYLAMRVLGRETRLIIAPWTHMEFGDKVGDQMFGVMSMRDAFAFPNGSWSDEVLTFLRSHLVNDAPTAETPPVQLFVMGRNEWRFEEAWPLERARSEQWHLHADGSLSTAAPAVDAAPSEVVYDPADPVPTHGGTLILHPFERGPVDQARIEARPDVLLFTSEVLEEDLEVTGPLRVRLHVESSAPSADWVARLCDVGPDGRSLNLADGIFRIDSGADSCREIEIDLWATSNVFLAGHRIRVQITNSCFPRWDRNLNTGDQDNPNFTSALQRVHHDARWPSYIELPVVPC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJB0</accession>
    <name>A0A0Q8VJB0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Type II secretion system protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_23975</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894016.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57382">
        <property type="protein sequence ID" value="KRC57382"/>
        <property type="gene ID" value="ASE19_23975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2079512at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018076">
        <property type="entry name" value="T2SS_GspF_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00482">
        <property type="entry name" value="T2SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360093" evidence="7">
        <location>
            <begin position="26"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="48"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="211"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSF" evidence="8">
        <location>
            <begin position="106"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC57382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="240" mass="23984" checksum="FA337E5CA865C098" modified="2016-01-20" version="1">MALLVALAAAGAVVLLLGPPPPAAAPSPPPPVAAPSPDADGVLRRGRWLWAVLAGGGAAAFLGGALALPAGVAVGVVVGVVAGRLEPAAVRRRRDEVRRDLPHVVTLLAAALRSGVAPVEAIDLVCRALPGSAADRLGPIAARLRLGGDPSTIWGALASDPELAPLGRTLARAHRTGAPVVGAVERLGEELARRGRAEVEDRARAIGVRAAVPLGVCLLPSFLVLGIVPLAVALASTITG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJK7</accession>
    <name>A0A0Q8VJK7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_23495</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893932.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57726">
        <property type="protein sequence ID" value="KRC57726"/>
        <property type="gene ID" value="ASE19_23495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1953080at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026004">
        <property type="entry name" value="Septum_form"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13845">
        <property type="entry name" value="Septum_form"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360097" evidence="2">
        <location>
            <begin position="28"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="Septum_form" evidence="3">
        <location>
            <begin position="48"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="Septum_form" evidence="3">
        <location>
            <begin position="52"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="274" mass="29344" checksum="E47044DF0E550D31" modified="2016-01-20" version="1">MNARTRSLLVVLTLGLALVLAACSDDGAPKPDATPTARQSSAPAPPASPKLGACYELPFETAVAPTSEIKPVPCTQEHTSETIAVGRIDALVDGHLLAVDSDRVQDQVAATCPKALSAYVGGNRELLRLSMIRPVWFTPTVEDSDAGADWYRCDAVVLAGTSTLADLTTGIKGVLGRAKGRDRYAMCGTAAPDAKNFERVLCSARHSWRATEVVTFQQGAYPGEKKVRAAGRTQCEDAGADAAEDPLSFEWGYEWPTKEQWDMGQDFGRCWAPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKC1</accession>
    <name>A0A0Q8VKC1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04525</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894333.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54749">
        <property type="protein sequence ID" value="KRC54749"/>
        <property type="gene ID" value="ASE19_04525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275789at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="273" mass="29006" checksum="9F0AD51B9C66483C" modified="2016-01-20" version="1">MSETALNSPRPPELTHLRLERPSEGVALLVLDQPDLRNAMSDEMTASWVAAVDHLAADPSVRAVVVTGEGKAFCSGGNLSWLASEPDATVDDLRNRMLPFYRAWLSIRRLEVPTIAAINGAAIGAGLCMALACDIRYAARGARMGVPFTKLGIHPGMAGTYLLPDTVGPAAARDLFLTGRLVDAEEALGLGLVSRVMEPADFRAQALAVAADIAGAAPIATKLTKRALQRGHASIETALEWEGLAQPVTLATEDLLEGIRAAQEKRPPVFRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKJ5</accession>
    <name>A0A0Q8VKJ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_04640</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894313.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54769">
        <property type="protein sequence ID" value="KRC54769"/>
        <property type="gene ID" value="ASE19_04640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="596146at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SMART" id="SM00240">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="288"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="domain" description="FHA" evidence="4">
        <location>
            <begin position="21"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="domain" description="FHA" evidence="4">
        <location>
            <begin position="194"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="104"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="318"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="106"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="321"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="572" mass="59206" checksum="617CC77EB96C18BF" modified="2016-01-20" version="1">MVGLVAELDGRVLRLDGKTSYRIGRAIEADVVLTAGSVSRQHAEIRLVGGLWVLVDAGSNFGTYVDGERITEYGIEQRITVRCGPPAPGAELVIIPADQYDEVLAAPPAPPAPPVAPPPPPAPASASASAPVPDRPVAPPAAAPVMAGNEATQILAAAPPSVPGQVGPPPVRSGPDLLLVAEGREHRFRHPAQITVGRRSDCTVVIGDPACSRVHGRIDAHPGGWTWTNLSSEGTWLDGRRVDRRPFDERVSLRLGHPVAGTELTLVPILSAAEEERRIARRRWGRRLVVVGAVAAGLLLVGGLLGAAWLVLRDDDSSTTAGERSSSGGPSSMDTLTNDELDSAKAAAVKITADTVDLADQPVSYGGSGSIIRADGLILTNAHVAAPESPGLAEQYVGLDLRDPDFLLIHLTDGRTDTNSPAAYRARVVEADGYLDVAVIQVYARADGSPLGGDLSLPTVPMGDSDALRAGDDVTVLGFPAIARSEDSITVTTGVVSTVINDGTLGPRSELDTDARIAPGNSGGMAINNDGELIGIPTALLPDQGGSSVLSGRIRSIDPVKELITAAEAAVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM06</accession>
    <name>A0A0Q8VM06_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Methionine aminopeptidase</fullName>
            <shortName evidence="2">MAP</shortName>
            <shortName evidence="2">MetAP</shortName>
            <ecNumber evidence="2 3">3.4.11.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Peptidase M</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">map</name>
        <name evidence="5" type="ORF">ASE19_06475</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 2">Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 3">
            <text>Release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.</text>
            <dbReference type="EC" id="3.4.11.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 3">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="2 3">Binds 2 divalent metal cations per subunit. Has a high-affinity and a low affinity metal-binding site. The true nature of the physiological cofactor is under debate. The enzyme is active with cobalt, zinc, manganese or divalent iron ions. Most likely, methionine aminopeptidases function as mononuclear Fe(2+)-metalloproteases under physiological conditions, and the catalytically relevant metal-binding site has been assigned to the histidine-containing high-affinity site.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.18" evidence="2 3"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895139.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55169">
        <property type="protein sequence ID" value="KRC55169"/>
        <property type="gene ID" value="ASE19_06475"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070084">
        <property type="term" value="P:protein initiator methionine removal"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01086">
        <property type="entry name" value="MetAP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01974">
        <property type="entry name" value="MetAP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001714">
        <property type="entry name" value="Pept_M24_MAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002467">
        <property type="entry name" value="Pept_M24A_MAP1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00599">
        <property type="entry name" value="MAPEPTIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00500">
        <property type="entry name" value="met_pdase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 5" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M24" evidence="4">
        <location>
            <begin position="1"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC55169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="257" mass="26923" checksum="51D59988CA36EF86" modified="2016-01-20" version="1">MRAAGLVVGRTLTRLRDAVRPGVSTGELDALAEQSIREQGGVPSFLGYGEPPFPASICASVNDEVVHGIPGHRVLAEGDVISIDCGAIVEGWHGDAAITVAVGAVPVDVQELMRVTEESLWRGLAAARIGGRVGDISYAVESFVRGAGDYGIVDGYTGHGIGSEMHMEPDVPNEGRPGRGPRLKRGTALAVEPMISLGTADTVVADDDWTVITADRSWAAHYEHTFALTDAGVWVLTAEDGGRARLEALGVPYGGED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMD7</accession>
    <name>A0A0Q8VMD7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Virulence factor Mce</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_08940</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895599.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54167">
        <property type="protein sequence ID" value="KRC54167"/>
        <property type="gene ID" value="ASE19_08940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="15"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="3">
        <location>
            <begin position="47"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="406"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="433" mass="45468" checksum="365F3C386B8561BC" modified="2016-01-20" version="1">MSDTDQIGLEPRSRMLIVVAFAAFCGLIFGFLWTHSGGKLPVVASTGYTVQVDVPRVGNLVYFSDVMVAGVKVGKVAEVSEQGDHARVVLELDDAVVPLHEGATVQVGAKSLVEESFVEVTDGTGAELESGAVLAAGAGKGPVQLDDVLKTLDAPTRKSVRAVLRSLGSVGDGNEKAVADAIRGLGDLGRNGTTVLDALAAQGQDIKGLTRNAARVLAALSERRTQLSALVDDASTVVAATAGQADDVREVMRALPPLMTTARDSSDDLTRLSTALAPVARNLTAAAPDLTRALRQLPATSRDLRATLPALSHVLDRAPATLDRVPGLADDVDGLIRPAEDVLADLNPMLGYLAPYDRDLAAWFTNFAQTIGLGDVNGKAFRVMPVLNEQSFTGWPFSTNIGPLDRYNPMPAPGSLDSPGPYGSAKYPRIGRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMD8</accession>
    <name>A0A0Q8VMD8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894215.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54866">
        <property type="protein sequence ID" value="KRC54866"/>
        <property type="gene ID" value="ASE19_05240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1626415at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026898">
        <property type="entry name" value="PrsW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36844">
        <property type="entry name" value="PTHR36844"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13367">
        <property type="entry name" value="PrsW-protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="139"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="180"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="213"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="244"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="373" mass="39400" checksum="43BC686D47596AFF" modified="2016-01-20" version="1">MSAGPRNSVAFTVVVTVAVTVGALLTLLVLALSGAPGATLLATGLAALPVGPVLAAYLWLDRYEPEPRILLVSGLAWGAFVATMAALVIQGVGGLVVPITDNASLAVAAPVVEEASKGLFLVLLLWWRRAEVDGILDGIVYAGMVGVGFAFTENILYLVAAWNGTDGVGPGGVEAVTGTFVMRCLFSPFAHPLFTAFTGVGIGLAVASRSRAVRWIAPVGGYLLAVLAHGIWNGSSVFGLGGFAVVYVVIMAPAFIGMVALAWWARETEAHVLRMALTDAADRGLLPATDIGWVVDLRARRAARRHARRQGGPAAERAMRDYQQAAIELGYLHHRLLRGTAPRDWQARGQDFLGRIQAARPRIAFPGQVVPQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN71</accession>
    <name>A0A0Q8VN71_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04180</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CdaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893098.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57065">
        <property type="protein sequence ID" value="KRC57065"/>
        <property type="gene ID" value="ASE19_04180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1439158at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041522">
        <property type="entry name" value="CdaR_GGDEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17853">
        <property type="entry name" value="GGDEF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF_2" evidence="3">
        <location>
            <begin position="181"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_30" evidence="2">
        <location>
            <begin position="347"/>
            <end position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="44693" checksum="98EE87A3A3FB1CDF" modified="2016-01-20" version="1">MEADLPESVVVELRRTAAELLGEVSSYADDMLSYIVERIPEASADDELRGLTLGSCSSNLEAALSMVRHGIDVSAASAPVTALEHARAMAARGYSVDVMLRFYRVGHAYFTERILAGITELVPDPGLAVGVLDSLQRYAFAYVDRISSEVAAEYVAELDRIQTRARAVRTDAVRALIAGERVDLRHAERTLSHRLTGWQTAFVCWTERDDVDLMRLGAVVGAQLGSSRPLLVPDGARALWGWVSTPGAPAATESDLRPLAEQVPDTVRVTVGMPAQGAVGFRESHLRAQRGRRIVDLGGRSAPVTSYAEIALADTMSGDLDLARSFVATELGALAVTGQREEEERRALLAVLDAQGGLAAAAEALGVHRNTVLQRVRRAEERRGRAATERVAELHAALRLVQVLGPVVLAPAAPQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN76</accession>
    <name>A0A0Q8VN76_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Riboflavin biosynthesis protein RibBA</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="13">3,4-dihydroxy-2-butanone 4-phosphate synthase</fullName>
                <shortName evidence="13">DHBP synthase</shortName>
                <ecNumber evidence="13">4.1.99.12</ecNumber>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="13">GTP cyclohydrolase-2</fullName>
                <ecNumber evidence="13">3.5.4.25</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="13">GTP cyclohydrolase II</fullName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="13" type="primary">ribBA</name>
        <name evidence="15" type="ORF">ASE19_23205</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 13">Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.</text>
    </comment>
    <comment type="function">
        <text evidence="13">Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>D-ribulose 5-phosphate = (2S)-2-hydroxy-3-oxobutyl phosphate + formate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18457"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
            <dbReference type="ChEBI" id="CHEBI:58830"/>
            <dbReference type="EC" id="4.1.99.12"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12 13">
            <text>GTP + 4 H2O = 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + formate + 3 H(+) + 2 phosphate</text>
            <dbReference type="Rhea" id="RHEA:23704"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58614"/>
            <dbReference type="EC" id="3.5.4.25"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="13">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="13">Binds 2 divalent metal cations per subunit. Magnesium or manganese.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="13">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 13">Cofactor biosynthesis; riboflavin biosynthesis; 2-hydroxy-3-oxobutyl phosphate from D-ribulose 5-phosphate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 13">Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 1/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="13">In the C-terminal section; belongs to the GTP cyclohydrolase II family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 13">In the N-terminal section; belongs to the DHBP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.99.12" evidence="13"/>
    <dbReference type="EC" id="3.5.4.25" evidence="13"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892521.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58965">
        <property type="protein sequence ID" value="KRC58965"/>
        <property type="gene ID" value="ASE19_23205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="900513at2"/>
    <dbReference type="UniPathway" id="UPA00275">
        <property type="reaction ID" value="UER00399"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008686">
        <property type="term" value="F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003935">
        <property type="term" value="F:GTP cyclohydrolase II activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00641">
        <property type="entry name" value="GTP_cyclohydro2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10990">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00179">
        <property type="entry name" value="RibA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00180">
        <property type="entry name" value="RibB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01283">
        <property type="entry name" value="RibBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017945">
        <property type="entry name" value="DHBP_synth_RibB-like_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000422">
        <property type="entry name" value="DHBP_synthase_RibB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032677">
        <property type="entry name" value="GTP_cyclohydro_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000926">
        <property type="entry name" value="RibA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036144">
        <property type="entry name" value="RibA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016299">
        <property type="entry name" value="Riboflavin_synth_RibBA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00926">
        <property type="entry name" value="DHBP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00925">
        <property type="entry name" value="GTP_cyclohydro2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142695">
        <property type="entry name" value="SSF142695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55821">
        <property type="entry name" value="SSF55821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00505">
        <property type="entry name" value="ribA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00506">
        <property type="entry name" value="ribB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 13" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="9 13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11 13 15" id="KW-0456">Lyase</keyword>
    <keyword evidence="13" id="KW-0460">Magnesium</keyword>
    <keyword evidence="13" id="KW-0464">Manganese</keyword>
    <keyword evidence="7 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="8 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 13" id="KW-0686">Riboflavin biosynthesis</keyword>
    <keyword evidence="13" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="GTP_cyclohydro2" evidence="14">
        <location>
            <begin position="213"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="region of interest" description="DHBP synthase" evidence="13">
        <location>
            <begin position="1"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="region of interest" description="D-ribulose 5-phosphate binding" evidence="13">
        <location>
            <begin position="31"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="D-ribulose 5-phosphate binding" evidence="13">
        <location>
            <begin position="144"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="region of interest" description="GTP cyclohydrolase II" evidence="13">
        <location>
            <begin position="206"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; for GTP cyclohydrolase activity" evidence="13">
        <location>
            <position position="337"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for GTP cyclohydrolase activity" evidence="13">
        <location>
            <position position="339"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>D-ribulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>D-ribulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="259"/>
            <end position="263"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="264"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="275"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="303"/>
            <end position="305"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="325"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="360"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="365"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="site" description="Essential for DHBP synthase activity" evidence="13">
        <location>
            <position position="130"/>
        </location>
    </feature>
    <feature type="site" description="Essential for DHBP synthase activity" evidence="13">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00029293"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC58965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="415" mass="45107" checksum="2596104F5C7C3E90" modified="2016-01-20" version="1">MSDKVRLDDVERAIADIAAGKAVVVVDDEDRENEGDIIFAASKATPELMAWTIRYSSGVICAPMPGAMLDRLEIPLMTPHNKDAYRTAYTISVDARDGTTTGISAADRARTVRTLADSATEPWELTRPGHVFPLRYREGGVLVRRGHTEAAVDLCRLAGLTPTGVLVEVVNDDGTMKRAPELRAFADEHGLAMISIEDLVRYRRRVERHVVREAETSLPTSHGDFTAIGYTITVDGSEHVALVYGDPETLGESGPVLTRVHSECLTGDVFGSSRCDCGPQLEEAMDRIVENGSGVVVYLRGHEGRGIGLVAKLQAYQLQDGGRDTVDANLDLGLPADARHYGAATQILKDLGVDEVRLLTNNPDKVSSLEDYGIKVAERVPLTPHPNGHNLAYLLTKRDRMGHQLPGLNDLEGDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNX5</accession>
    <name>A0A0Q8VNX5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22715</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892604.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58879">
        <property type="protein sequence ID" value="KRC58879"/>
        <property type="gene ID" value="ASE19_22715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2064731at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025447">
        <property type="entry name" value="DUF4192"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13830">
        <property type="entry name" value="DUF4192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="339" mass="35993" checksum="4E227B8B062444E2" modified="2016-01-20" version="1">MTTTPSRTPLTARCSEDLIALAPVVLGFWPEESIVLLTFGAARPFHARVDLPPREVQDKKVRGEVCRMLLGPAQRYGVRAVVLLYFTSDLLAAEAVHTTLARGCRRARIQVVSGVVADGHAYVDLGAGGGRLGPPTPYDVTIHPFVLDALVSGQLPHRSRDEMAAGLELDPVLAAPVLAALADGGLLDTGPPADGRAIGTQGAWVEQTVARAVATGELPRPGELARLLWTLQVPLVRDAAWSLLDRAGATAHVRFWTDVLRRAPDPVAAAPAALLGWSAWQAGDGALAWAAVDRCRRSEPAYPLAADLAKLLEHAVPPESWTGVPDWRIGLPRGGGDAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP73</accession>
    <name>A0A0Q8VP73_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04310</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54711">
        <property type="protein sequence ID" value="KRC54711"/>
        <property type="gene ID" value="ASE19_04310"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="74" mass="8263" checksum="AF779CB4F74A5A25" modified="2016-01-20" version="1">MLDGEGFWDRNDNLFGWTALLGERRGGPDVSSYAAPARAEDLAGLPRTFIDVGSVETLTRYCLRWQAFGGRRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPW5</accession>
    <name>A0A0Q8VPW5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896861.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59480">
        <property type="protein sequence ID" value="KRC59480"/>
        <property type="gene ID" value="ASE19_00090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="489714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="33"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="292" mass="32520" checksum="3057561F4DF94FCA" modified="2016-01-20" version="1">MDTRVAELARRLGETGYLCDDDLATVLFLSLEMGRPLLLEGEPGTGKTALAEAIAEALDRPLIRLQCYEGIDATQALYDWDFPRQILHLRALEALSGGERGDVEEAEKSLYDERFLLARPVLAALQRSPAVLLVDEVDRADDEFEAFLLEVLSTFQVTIPELGTVQAATPPTVVLTSNRTRELHDALKRRCLYHWIDHPGLEREVAIVRSRAPEVSAELARQVVEVVQQLRAGTELLKPPGVAETLDWARALHHLGTVDLDVETAARTLGALVKYRDDAERVRAALDRMLTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ47</accession>
    <name>A0A0Q8VQ47_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Phosphomethylpyrimidine synthase</fullName>
            <ecNumber evidence="10">4.1.99.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Hydroxymethylpyrimidine phosphate synthase</fullName>
            <shortName evidence="10">HMP-P synthase</shortName>
            <shortName evidence="10">HMP-phosphate synthase</shortName>
            <shortName evidence="10">HMPP synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Thiamine biosynthesis protein ThiC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">thiC</name>
        <name evidence="12" type="ORF">ASE19_00595</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 10">Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>5-amino-1-(5-phospho-beta-D-ribosyl)imidazole + S-adenosyl-L-methionine = 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine + 5'-deoxyadenosine + CO + formate + 3 H(+) + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:24840"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:17245"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:58354"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:137981"/>
            <dbReference type="EC" id="4.1.99.17"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="10">Binds 1 [4Fe-4S] cluster per subunit. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="10">Cofactor biosynthesis; thiamine diphosphate biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the ThiC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.99.17" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896774.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59566">
        <property type="protein sequence ID" value="KRC59566"/>
        <property type="gene ID" value="ASE19_00595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="505395at2"/>
    <dbReference type="UniPathway" id="UPA00060"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016830">
        <property type="term" value="F:carbon-carbon lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00089">
        <property type="entry name" value="ThiC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037509">
        <property type="entry name" value="ThiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038521">
        <property type="entry name" value="ThiC/Bza_core_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002817">
        <property type="entry name" value="ThiC/BzaA/B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30557">
        <property type="entry name" value="PTHR30557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01964">
        <property type="entry name" value="ThiC_Rad_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00407">
        <property type="entry name" value="phosphomethylpyrimidine_syntha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00190">
        <property type="entry name" value="thiC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 10" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7 10" id="KW-0408">Iron</keyword>
    <keyword evidence="8 10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6 10" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="5 10" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="82"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="282"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="323"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="197"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="262"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="362"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="366"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="389"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="430"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="510"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="513"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="518"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC59566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="556" mass="61155" checksum="7FA975060FDDE835" modified="2016-01-20" version="1">MTVHPVHPAHTRIEVGDLAVPFTRVALTNGETFDRYCTSGPGSDPEVGLPPLRAAWIEGRADTTSYDGREEQLLDNGRSAVRRGEAQDPWRGARRRPRRGGNVTQMAYARAGTVTEEMRYVAAREQCDVELVRSEVAAGRAIIPANVNHPESEPMIIGKRFLVKVNANIGNSAVTSSIAEEVDKLTHAITWGADTVMDLSTGEDIHTTREWIVRNSPVPIGTVPIYQALEKVNGEADKLTWEVFRDTVIEQCEQGVDYMTIHAGVLLRYVPLTANRVTGIVSRGGSIMAGWCLAHHEENFLYTHFDELCEIFRQYDVSFSLGDGLRPGATADANDEAQLSELRTLAELTERAWAYDVQVMVEGPGHVPLNLVEENVRLQQDWCHGAPFYTLGPLATDIAPGYDHITSAIGAAAIAMHGTAMLCYVTPKEHLGLPNRDDVKTGVITYKLAAHSADVAKGHPGARDWDDALSKARFEFRWHDQFALSLDPVTAESFHDETLPAENAKTAHFCSMCGPKFCSMRISQDVRERFAADGMAQKSAEFVELGGTVYVEPEAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQF6</accession>
    <name>A0A0Q8VQF6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01555</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896606.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59733">
        <property type="protein sequence ID" value="KRC59733"/>
        <property type="gene ID" value="ASE19_01555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="997616at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008279">
        <property type="entry name" value="PEP-util_enz_mobile_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036637">
        <property type="entry name" value="Phosphohistidine_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002192">
        <property type="entry name" value="PPDK_AMP/ATP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00391">
        <property type="entry name" value="PEP-utilizers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01326">
        <property type="entry name" value="PPDK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52009">
        <property type="entry name" value="SSF52009"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPDK_N" evidence="2">
        <location>
            <begin position="18"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilizers" evidence="1">
        <location>
            <begin position="778"/>
            <end position="848"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="861" mass="91844" checksum="34662CE6DD7C5DE0" modified="2016-01-20" version="1">MTELVLPLADCTADLSGQVGGKAIGLGALLRDGHPVPAGFTVTTAAYRAALGALDEQIAALVPASEGATNDRAASDAIRQLVEGQAIPDAVLDAVRAAYLALDPAGEVLVAVRSSATAEDLPDASFAGQQDTYLGVRGADAVVAHVRRCWSSLFSPQAIGYRRRFGIAPDDLAMAVVVQTMVGAEAAGVMMTLDPTDGDRSTVFISAAHGLGEGVVKGDVEADSTWVDKASLAVRASEVLTQTTRHRYDEASGTVVVEPLDPDVGRTPAITDAEASELAAIALRMEEAQGVPQDLEWAVGRDPDGARTLFLLQARPETVWANRSPLAVVPPALHDTSRPDSTWTTTNVGESVPGIPTPLGWSMWKVAGEHAMRSAFHAIGALDDAERELPEDPEDWLLAIFHGRASLSVSLVCEWTERVPGTDPAAAAQQIFSAIPPGYVSRSQRRYYPRVLAKAGLPLLRVKRMVLDDRRDAEAFRSATLAELPTADERRTRQLLEDALAMHRRCLSTQTLLTMAVCQPITDRFLALAASVGMSGEELMAGYGGHDETAAVTDLWACSRGRLDLDTFLARHGFHAWQEGELSSRSWREDPTPVHHLVASYRRQDDAADPALAEVARSARRTELEREFLSRLSPLVRPAGRLVLRLTHTFIPLRGIAKGSFVQSLDVVRAAARRLGTLLAERGMLADREDVFYLTLPELRGGEVLDTAVPVTELVAARRAERAGYEGLRVPSAFTGVPDASPVVPVAGRDLIVGTGASPGVVEGRARVVTRPEDAVVDDGDILVARDTDPSWASLMFLSSALVADIGGVMSHTAIVARELGLPCVVNAGDASSTLTTGDLIRVNGSQGTIEVLERAVRQDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQQ3</accession>
    <name>A0A0Q8VQQ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ketosteroid isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01860</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896551.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59788">
        <property type="protein sequence ID" value="KRC59788"/>
        <property type="gene ID" value="ASE19_01860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1644255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12680">
        <property type="entry name" value="SnoaL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="12"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="133" mass="13799" checksum="C8A4602F72EC50B8" modified="2016-01-20" version="1">MSEQTPAAVAATYFDALGRGDVPAAIAQFDEAVVWHQPGANQFSGDHVGIGGVGALLGGMMETSQGSFQLAVTGPAMVNGDLVAVPVRFTGHRDGVSMDMAGVDLLTVRGGRIVEVHLFSEDGAAEDQFWGRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQT6</accession>
    <name>A0A0Q8VQT6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01755</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896571.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59768">
        <property type="protein sequence ID" value="KRC59768"/>
        <property type="gene ID" value="ASE19_01755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275789at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="265" mass="28347" checksum="C17F2D2260745F70" modified="2016-01-20" version="1">MTDGYQTLQLAIDDDGVCEIVLSRPELMNRFDPELHHELTRALRDIAADRSVRAVVLASTGRAFSAGGDFELMESANKDADVRRGIIGDARHLLDAFLALPQPIVVAVQGAAIGLGATVAMLCDAVVASRNAVLADTHVAIGLVAGDGGCLVWPQAMGMTRARRHLLTGDPLDADTALRLGVVTDLVETPEEAHPAATEIARRMARLAPLAVQGTKRALNQVSRQRADEVVDLALAFEEQTLASEDLLEGVASFKERRSPRFAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRF4</accession>
    <name>A0A0Q8VRF4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5 family acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03015</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57041">
        <property type="protein sequence ID" value="KRC57041"/>
        <property type="gene ID" value="ASE19_03015"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025289">
        <property type="entry name" value="DUF4081"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016794">
        <property type="entry name" value="UCP21603_acetyltransf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13312">
        <property type="entry name" value="DUF4081"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF021603">
        <property type="entry name" value="UCP21603_acetyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="147"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="280" mass="30502" checksum="3A3B2C457E1CC4F6" modified="2016-01-20" version="1">MTTRHGVRVLAAADVPAFVDLANQDPVVNVFALHRAHTTNLEPRWLGGEMWGRFDGGRLVAACHVAANLVPVQASAEDAVVFAERALSRRRSASTIVGPQSAVRPFWDEVAPQWGQPRDVRWDQRHLVLDGPPVVQPDHGVRAGVQGDISTLYPACVAMYTEEVGVSPEAGGGGDLYRARVAQLIGRGWSFVRYDGDELVFKAEVACATENAAQIQGVWVPPHRRGEGLASAGMAAVVHQVRARISPTVSLYVNDWNVAARKVYERVGFVETTRFATVMF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRH6</accession>
    <name>A0A0Q8VRH6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">OmpR/PhoB-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04195</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AfsR/DnrI/RedD regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893025.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57008">
        <property type="protein sequence ID" value="KRC57008"/>
        <property type="gene ID" value="ASE19_04195"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15831">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041664">
        <property type="entry name" value="AAA_16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005158">
        <property type="entry name" value="BTAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13191">
        <property type="entry name" value="AAA_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03704">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01043">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1117" mass="119529" checksum="327DAF1AFF9DFF5B" modified="2016-01-20" version="1">MTTTAVHVGVLGPTTIKVAGQEVDLGSLKQRALLAVLALGEGHPVSTDRIIHALWHDSPPSGVTTTLHGYIASVRRLLEPSRAPRTAPSILVTAPGGYALRLGRAGTDVAVLATAVERATTALRVIPETQRPVAAPQHHESLRACHDDLAQAVALWRGSPYADLGDTELVEAERQRLRELLLTARTQQCVIELAVGDHAAAAPTLQRLTTEHPLREQLWILHAVALTRAGRQADALAALQQLRDVLVDELGIDPSPQVQALQRDILRQDASLVERAPSAVVSAASVPPRSIPSFPWPLVGRRAEIRSLEAALDRAAGARQQLAHIVGEPGIGKSRLTRELATLAAHRGFVHVEGRCSPDDGAPPLWAWQQVLRAVAEVCQVEVPDLAATVQDSTAEQAAIQFLMNEAIAEALRQAAAVAPLMIAIEDVHWADASTLRVLRHLAEHGGRERILLCVTQRPDDGSGATLELGYAFARADATRLDLVGLDATESAMLVTHVAGARAEGVDGRRLQERTGGNPFFLSEVARSRDPLGGAATAPLSELVAQRVRTLAAPTRELLEAAAVVDRVVNASLVAAAAHVEDASLIDRLAPAQAAGLLVTEPDGRLAFAHAIVREAVLGAMRPVVVEQWHARVARALESRQLRGASERSALAYHWREAGYAHAGRAWRAAVSAAEAAREVHATEEAAVLLAQALESQRLDATSADIQRYELLMQLASARRVAADWAGAAAAVTQAIATAERMGEPELAARASVGSVEGAVWHARTYGTVQDDLVAALRRALNNLPAGDSELRCRAMLCLAVEAYYLAPPAETDALVEEALAIAERIADPRLLVVALQLAFSARWRPATAEWRLSTIRRGHEIATALGDVHLEVTCRAFLAIVLVELGHVDEGRELIGPTIELASRHGILTAVTILEMLRAPMLLLSGEDEAAEVCIDHVIELAQRVTVPNMDHATAALKSVQVLWQGRFDELSAVLTQLIANQTVPVDTFVVAMLLRVGDVSKAREVFDATFVEPGDRDYMGVIQHCLAGEVALGLGESALAARTYRWLKPYAGRISSAGSTTIMGPVDAFLALAAAATGDLEAAAGHADDAMHLCDKWGFHRVSAWLEALRAQHRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRP9</accession>
    <name>A0A0Q8VRP9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GIY-YIG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01790</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896564.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59775">
        <property type="protein sequence ID" value="KRC59775"/>
        <property type="gene ID" value="ASE19_01790"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000305">
        <property type="entry name" value="GIY-YIG_endonuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035901">
        <property type="entry name" value="GIY-YIG_endonuc_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01541">
        <property type="entry name" value="GIY-YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82771">
        <property type="entry name" value="SSF82771"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50164">
        <property type="entry name" value="GIY_YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GIY-YIG" evidence="1">
        <location>
            <begin position="1"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="110" mass="13029" checksum="741A580E862A9E05" modified="2016-01-20" version="1">MPWTYMLRCSDDSYYVGSTWDIEGRVWQHQQGELGAVYTYRRRPVELVWCVWYDRVEDAFRFEKQVQGWSRKKREALINGAWNELPDLSRRLAVQKRLAAEKDADDAPGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRY0</accession>
    <name>A0A0Q8VRY0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03010</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892821.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56802">
        <property type="protein sequence ID" value="KRC56802"/>
        <property type="gene ID" value="ASE19_03010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="15"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="21959" checksum="C216BB898C30AAA9" modified="2016-01-20" version="1">MATTTDTVRRRLSAPARRQRIEAAAVEVFADRGYDATSVGEVATAAGVTRTVLYDHFRSKRELYLQVLDSQNSAMLAEVGAGITGAGAGDDRLRATVTAYLSFARQRPAARRLLVDPIPTGDAELDQVLSAYRTARTQAVAAMLAPDLARSGVVAGSTAAAVVVELLITGVDGVARWWQDHPGASLDEVTDIASRLLWNGLPRLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VS14</accession>
    <name>A0A0Q8VS14_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">ATP synthase subunit c</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">ATP synthase F(0) sector subunit c</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">F-type ATPase subunit c</fullName>
            <shortName evidence="13">F-ATPase subunit c</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Lipid-binding protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">atpE</name>
        <name evidence="15" type="ORF">ASE19_03220</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12 13">F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.</text>
    </comment>
    <comment type="function">
        <text evidence="13">Key component of the F(0) channel; it plays a direct role in translocation across the membrane. A homomeric c-ring of between 10-14 subunits forms the central stalk rotor element with the F(1) delta and epsilon subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cell membrane</location>
            <topology evidence="13">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the ATPase C chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_036542107.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56834">
        <property type="protein sequence ID" value="KRC56834"/>
        <property type="gene ID" value="ASE19_03220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01396">
        <property type="entry name" value="ATP_synth_c_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005953">
        <property type="entry name" value="ATP_synth_csu_bac/chlpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000454">
        <property type="entry name" value="ATP_synth_F0_csu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020537">
        <property type="entry name" value="ATP_synth_F0_csu_DDCD_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038662">
        <property type="entry name" value="ATP_synth_F0_csu_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002379">
        <property type="entry name" value="ATPase_proteolipid_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035921">
        <property type="entry name" value="F/V-ATP_Csub_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10031">
        <property type="entry name" value="PTHR10031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00137">
        <property type="entry name" value="ATP-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00124">
        <property type="entry name" value="ATPASEC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81333">
        <property type="entry name" value="SSF81333"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01260">
        <property type="entry name" value="ATP_synt_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00605">
        <property type="entry name" value="ATPASE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 13" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="13" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 13" id="KW-0138">CF(0)</keyword>
    <keyword evidence="6 13" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="8 13" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 13" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="10 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 13" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="45"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-synt_C" evidence="14">
        <location>
            <begin position="10"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="site" description="Reversibly protonated during proton transport" evidence="13">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00025198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC56834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="72" mass="7202" checksum="EF495A86E46AE01D" modified="2016-01-20" version="1">MGGSLNMIGYGLAAIGPGIGIGLIFAAYINGVARQPEAQSRLQSIAILGFALAEALAIIGIALAFVLKASNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VT04</accession>
    <name>A0A0Q8VT04_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23670</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57757">
        <property type="protein sequence ID" value="KRC57757"/>
        <property type="gene ID" value="ASE19_23670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="380718at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360350" evidence="1">
        <location>
            <begin position="20"/>
            <end position="623"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="623" mass="63886" checksum="7C214136F3B4B00E" modified="2016-01-20" version="1">MLLVTTLVSAGSALLPAQAQTTLSPTEAAGPGNPPVVRGDSISISVDRAALAFTRSLTSQNFAPASSVAMALGGCRGDNPAGTNASARTEVTVTAPDGSAVLTQVSPVRNLTTAGFFTTPPNQPLNPQPAPGNTNYRGDFTSNTYHGMSATLSLAGRPAGIYTVTTSDFNTVRTGSGACAFGTPDTVGTGYGKVVTPGPVVTTKTFEYRPWAVTFKDVFGKGGVRANVVPSEYQYSVDTEDSPIIAGDQTSSGTGHNQQFYALPGSFALPSDPQACVDDPSSCLPSNAVPCTPSAGCTPRVMFIEDPVSDVDKQGLVGVFDLDTKAFVAYATLNGTTRTLMSLGTANDAYYHDLLAQLSAGAAAQGIDLATILATEVRVGTQDKRLTLSLLNGLQIDPSTSPGGVQIASDATVQAGIVLDIYSSLRLTGGACVANSASSTTEPDRYTPKENNGYTVTKSDLLPEVPAVGPLGAIVGGPLYHVTGKFNSDALVNTASTVIGVDTAADEPNGYPVWVAPFLSGIHTAHPRTMDFLGTGTWSASETPVLAGCLVVDFLLGTGVAVYNNPLPVGIGTVFDPLAKPTPAAEQLTDAINTAVDDVVSQVSANPTVSSLLNQVTALLPLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUW4</accession>
    <name>A0A0Q8VUW4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ATP-dependent helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_01015</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896706.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59635">
        <property type="protein sequence ID" value="KRC59635"/>
        <property type="gene ID" value="ASE19_01015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="679382at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016818">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006139">
        <property type="term" value="P:nucleobase-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006555">
        <property type="entry name" value="ATP-dep_Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045028">
        <property type="entry name" value="DinG/Rad3-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014013">
        <property type="entry name" value="Helic_SF1/SF2_ATP-bd_DinG/Rad3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11472">
        <property type="entry name" value="PTHR11472"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13307">
        <property type="entry name" value="Helicase_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00491">
        <property type="entry name" value="HELICc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51193">
        <property type="entry name" value="HELICASE_ATP_BIND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="5">
        <location>
            <begin position="17"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="156"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC59635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="654" mass="70023" checksum="C8A55C921295DE3F" modified="2016-01-20" version="1">MSTESAVDSTPVRDLLATAVAALGGQERSGQVAMAEAVAQAFADREHLLVQAGTGTGKSLGYLVPALLHDKRVVIATATLALQHQLVERDLPRLVKAVGSIPGLDASYAVLKGRSNYACLHRIREGAPDDQGELIQIPEGSMGAKVIELRKWAESAAEDGGSGERDDAPRHTEKEWRTVSVSARECLSASKCQFGQECFAERAKEKAHKSHLIVTNHSLLAIDAIEGIPMIPDYDAVVIDEAHELAARVTQAATDELWAAEVERAARRSVRHVEGNEADDLADAADALRAAVSEAPAGRFERLPEDLADALALVRDAARACISAFPKGDAKSGQEPDAAMTQAKGMVQEVFATAERMAANSEHDVLWRTEGTDRLPPTLAIAPLQVWGQMRDKLLADNTVVMTSATLMLGGDFNSVARSVGLKPMPDAEQPWRGIDVGSPFDYGKQGILYVARHLPPPGRDGLVKAQLDEITELVDAADGRTLGLFSSRRAAEAAAEHVRKALPHLTTLAQGEAQLPELARQFLEDPHTCLFGTLGLWQGLDVPGDTCQLVLIDRIPFPRPDDPLMSARQKAADQAGGNGFMQVAATHAALLLAQGAGRLIRTTSDRGVVAVLDPRLATARYGSFLKASLPPMWPTTDPAVVRQALTRLSSSPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUX7</accession>
    <name>A0A0Q8VUX7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01095</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896690.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59651">
        <property type="protein sequence ID" value="KRC59651"/>
        <property type="gene ID" value="ASE19_01095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="150800at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021941">
        <property type="entry name" value="DUF3556_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12077">
        <property type="entry name" value="DUF3556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="182"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="238"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="300"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="328"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="358"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="390"/>
            <end position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="623" mass="68988" checksum="DADBD090E5D75148" modified="2016-01-20" version="1">MGFIKPEPEPMEPDDFLVLPFQERIKVLSTNWVTAGFNTPRMLHVVYILKMLGLYFAVGLAITSWTTDYVHFTDPGTWFDNVVVYQKLAVWLMLLEVIGLGGAFGPLCGHFVPMLGNIRYWLRPGTIRMAPWGRHVPLTGGDERTVADVVLYVGVLAALVVPLVAHADTVDILPAGTGPQELVPPLAFVPILVLMPLMGLRDKVVFLAARSEQYLPIMLFSATLGALVFSDAADAGDFVNLVVAFKVIICVVWIGAGTSKIGEHFINVVPPMVSNSPGQLNVIKRLHYRNAPDDIRPSRLAWFMAHVGGTTVEIIIPVVLLLTTNDTIAMLGAIAMLVFHIFITSTFPLAVPLEWNVYFGYIALVLWGGTDLGAGFDASTYNIWDFSEPLLLLPIFGLLLFGPVLGNFRPDLVSFLPSMRQYAGNWASAVWAMKPGVEQRLNELPVVEVQNDQLQRMAPMPYTADEAEMTIQKALAWRSMHSQGRGLFSVLLEHLDDIETRDVREGEFMCNILVGWNFGDGHLHDERLIAAVQKRLNLAPGDLVVAYCESQATPWRTSRPQQYRVIDAALGIVERGGWDVRDCVKEQPWLPNGPVPLQVGWTADGYRRKQTLTTPVTGKDPVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVM0</accession>
    <name>A0A0Q8VVM0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MDMPI_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00880</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896732.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59609">
        <property type="protein sequence ID" value="KRC59609"/>
        <property type="gene ID" value="ASE19_00880"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2054078at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017517">
        <property type="entry name" value="CHP03083_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024344">
        <property type="entry name" value="MDMPI_metal-binding"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11716">
        <property type="entry name" value="MDMPI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03083">
        <property type="entry name" value="TIGR03083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MDMPI_N" evidence="1">
        <location>
            <begin position="11"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="22854" checksum="98FE263F6B88BC6D" modified="2016-01-20" version="1">MDKAAIWAHIHAERAALAATLAELDAADWAHDSLCPGWTVHDVAAHVISNPQIGWGQMAGLTARNLGRGYNTMIFREVKRLGARETRESILGDFERYAASTRHVPTTTSVEPLIDALLHHQDIVRPLGRTRAMAPEAAAVAADRVRRLAPLMGTGRLVRSIRLVATDVDWSRGTGPEVRGPVQELLMLASGREPDRALVEGEGLAAVPTRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVQ6</accession>
    <name>A0A0Q8VVQ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_01045</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896700.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59641">
        <property type="protein sequence ID" value="KRC59641"/>
        <property type="gene ID" value="ASE19_01045"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07389">
        <property type="entry name" value="MPP_PhoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018946">
        <property type="entry name" value="PhoD-like_MPP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038607">
        <property type="entry name" value="PhoD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032093">
        <property type="entry name" value="PhoD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09423">
        <property type="entry name" value="PhoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16655">
        <property type="entry name" value="PhoD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PhoD_N" evidence="3">
        <location>
            <begin position="52"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="PhoD" evidence="2">
        <location>
            <begin position="155"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="380"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="537" mass="59763" checksum="E2059698BFE1F8D6" modified="2016-01-20" version="1">MTLLWDDRNRLGELRVGRRTSIVAGLTGASIPALGMLRFPSLVERRRDLTSGVRSGEVTTSSAVLWSRAVEPSRMMVRLGSGPRVRVVRGRWADPRTDFTARMHLTDLAPGREYDAEVWFETPEGERSAPQRLSFRTAPVHAAAQSIVWSGDANGQGWGIDKGRGGMTTFRMMLDLRPDLFVHVGDTIYADEPMPETRLLLENGTTWRNELTEEVLAPAETLADFRGRHRYSLRDDNVRAFHAAVPSVVQWDDHETCNNWYPGETIDADGYTERRADVLALRGRRAWQEYQPVPVGRLVAADGNGFAPRRIYRKVPRGQHLDLFLLDMRSWRGPNPDADPAVAAQRGEAGLLGPTQEAWLIEGLRRSTATWKVISIDQPLSSPASHTQDLDGVSNGDDGPPLGREPEIGRILSAIKRHRIRNVVWITADVHYTAANHYSPERASFTDFDPFWEFISGPLHCSPFTAKPDQLDRTFGPLVHFTHGKDEALPVKIAPRPDNQHVGHLAIAATGLLTVSLYDGGGTVLWQKSLEPEGVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VY91</accession>
    <name>A0A0Q8VY91_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896614.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59725">
        <property type="protein sequence ID" value="KRC59725"/>
        <property type="gene ID" value="ASE19_01510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1641547at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="139"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="210"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="259" mass="28507" checksum="405160D3133BEE22" modified="2016-01-20" version="1">MPAAPSLFSEKSQRAILWWGIGLAVVYAVALIFLMKMVPPPDADWSAERVAEFYRDNSTSIRWGAVISGWTGAFMMPILAVVAIQMARVETGGAKIWAALSLVSGAVMSIWLALPPIFWGAAAFSADRNPEITAMTHEIGLLTLVTTDQFYVFLWVGVTVLCLRPATQLVKHNPFPRWWGYLSLWITIMFEAGAFAFVPKTGLLSWNGLLVFWSPLSLFGVWISIQSWLLFRALRGQEAEKLATGTTGAPVSEPAEALL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYQ8</accession>
    <name>A0A0Q8VYQ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_00915</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896725.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59616">
        <property type="protein sequence ID" value="KRC59616"/>
        <property type="gene ID" value="ASE19_00915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1181903at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="12"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="48"/>
            <end position="55"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="253" mass="26700" checksum="1D9D21A93647E1BB" modified="2016-01-20" version="1">MNLTRTASSTALAVEGLTRTYGDGDATITALAGIDLAFARGSFTAVMGPSGSGKSTFLSCAAGLDRPTSGRVLIGGEDVTDWDEERRTRLRRERIGFVFQGFHLLPYLSAAQNVALPARLAGRKPDRARVRGLLERVGLGDRTHHLPGSMSGGQQQRVAIARALATEPEVVLADEPTGALDSATAREVLGLLRTSVTELGQTVVMVTHDPVAASYADEVVFLVDGRVAGRMSHPTADAVAGQMAHLDDLVVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZ89</accession>
    <name>A0A0Q8VZ89_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_00715</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896896.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59808">
        <property type="protein sequence ID" value="KRC59808"/>
        <property type="gene ID" value="ASE19_00715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="498436at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010290">
        <property type="entry name" value="TM_effector"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05977">
        <property type="entry name" value="MFS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="55"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="88"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="115"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="237"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="272"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="298"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="324"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="358"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="386"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="1"/>
            <end position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="428" mass="44800" checksum="E19FC2BCBB640585" modified="2016-01-20" version="1">MTEPNQGATTSPRFRSLAHHNYRLYFAGSLVSNVGTWMQRVAQDWLVLTIPGNGGTALGITTGLQFLPVLLLSPYAGVVADRFSKRRLLQVTQTVMALAALALGAIAASGAAETWHVYLLAFVFGIGAAFDAPARQAFVSEMVGPDDVANAVSLNSAAFNTARMVGPGIAGLLIGIGGGGMRATGWVILANAVSYAAVILQLRRMDPDELQSPRPVAREPGMLRAGVAYVRTQPKMVMILVLVFFVGTFGMNFQLTSALMATEVFGKGAEEYGVLGSFLAIGSLSGALLAAGRARVRVRLLMGAAVAFGLLEVVAGFAPSYLLFVLVCPLLGLSVITVMNSCNALLQVESDPAFRGRVMAIYMTIVMGGTPLGSPFIGWIGDTYGARWTLVVGGVLVLVGVGLAVLVGVVARRGSPRAVRSAPAMLPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMA4</accession>
    <name>A0A0Q8UMA4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Kynureninase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19940</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895918.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46142">
        <property type="protein sequence ID" value="KRC46142"/>
        <property type="gene ID" value="ASE19_19940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1474443at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="378" mass="41161" checksum="A8922F09BEC3AB76" modified="2016-01-20" version="1">MGDPERDVSLATHYTHFRVAERLLLTGHAHQAWPDVARDAVLEAYDDAALAVDEKWARAEVRAERLRTGVRTLLDDPGAEVTLGASAHELLVRFLSALPLRARPRLVTTDGEFHSTRRQLDRLEEEGVEVVRVPTAPAETLAERLAGAVDDRTAAVVVSSVLFETARIVPGLAAVAQACERSGTELLVDAYHQLGVVPLSVRDDGLAEAWVVGGGYKYLQLGEGCCFLRVPPHAAGTRPVVTGWFAHDGDRFAGSTYDPTSHYRAARVLDFFDEQGLTPAVLRETSRRQRGILTDAFDALDLPEDVVTRDRDTPAEEFGGFLALSSPHAARLRATLAERGVRADHRGPYLRLGPAPYLSDEQLTTAVALLGEVGQKTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMD6</accession>
    <name>A0A0Q8UMD6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Bifunctional uridylyltransferase/uridylyl-removing enzyme</fullName>
            <shortName evidence="7">UTase/UR</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Bifunctional [protein-PII] modification enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Bifunctional nitrogen sensor protein</fullName>
        </alternativeName>
        <domain>
            <recommendedName>
                <fullName evidence="7">[Protein-PII] uridylyltransferase</fullName>
                <shortName evidence="7">PII uridylyltransferase</shortName>
                <shortName evidence="7">UTase</shortName>
                <ecNumber evidence="7">2.7.7.59</ecNumber>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="7">[Protein-PII]-UMP uridylyl-removing enzyme</fullName>
                <shortName evidence="7">UR</shortName>
                <ecNumber evidence="7">3.1.4.-</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="7" type="primary">glnD</name>
        <name evidence="10" type="ORF">ASE19_20105</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[protein-PII]-L-tyrosine + UTP = [protein-PII]-uridylyl-L-tyrosine + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:13673"/>
            <dbReference type="Rhea" id="RHEA-COMP:12147"/>
            <dbReference type="Rhea" id="RHEA-COMP:12148"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:90602"/>
            <dbReference type="EC" id="2.7.7.59"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[protein-PII]-uridylyl-L-tyrosine + H2O = [protein-PII]-L-tyrosine + H(+) + UMP</text>
            <dbReference type="Rhea" id="RHEA:48600"/>
            <dbReference type="Rhea" id="RHEA-COMP:12147"/>
            <dbReference type="Rhea" id="RHEA-COMP:12148"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:90602"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="7">Uridylyltransferase (UTase) activity is inhibited by glutamine, while glutamine activates uridylyl-removing (UR) activity.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">Has four distinct domains: an N-terminal nucleotidyltransferase (NT) domain responsible for UTase activity, a central HD domain that encodes UR activity, and two C-terminal ACT domains that seem to have a role in glutamine sensing.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the GlnD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.59" evidence="7"/>
    <dbReference type="EC" id="3.1.4.-" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895946.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46171">
        <property type="protein sequence ID" value="KRC46171"/>
        <property type="gene ID" value="ASE19_20105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="162558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008773">
        <property type="term" value="F:[protein-PII] uridylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006808">
        <property type="term" value="P:regulation of nitrogen utilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00277">
        <property type="entry name" value="PII_uridylyl_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010043">
        <property type="entry name" value="UTase/UR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47320">
        <property type="entry name" value="PTHR47320"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 7" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="2 7" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="1 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HD" evidence="9">
        <location>
            <begin position="397"/>
            <end position="501"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="8">
        <location>
            <begin position="674"/>
            <end position="745"/>
        </location>
    </feature>
    <feature type="region of interest" description="Uridylyltransferase" evidence="7">
        <location>
            <begin position="1"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="745" mass="80222" checksum="C908823F13240F81" modified="2016-01-20" version="1">MTAADRVARTEAADALCVKAYDDAGGPDTGVALVAVGGYGRGDMAPFSDLDLVLVSDEGVAQAQGEAWAEFAGQVWYPLWDTGVKLDHSVRSLSEMLTAAESDVRVASGLLDVRHVAGDHSLSLRLRTTVLAQWRRQARERLPELHEMVRTRHRLIGELAHLSMPDLKEAEGGLRDATVLKSLTATWLVDVPAADLQRCRVQLLDVRDVLHAAAGRATDRIAPEHWAALAEGLDLPDERTAQRHVRELGRRLTHLSRLAWRRADDALRRTPAAKPRRPELERLAPGVALSKGEVVLDKGARPADDPVLLLRAAAEAATRDLVLAPPTAARLVRESPPLPTPWPTEARQQMVRLLAAGRGLLGVWETLEETGALSRILPEWERIRLLPHASVIHRFTVDRHVVETCVEASALIRHVARPDVLVVAALLHDIGKGGLTEHSVAGSPIAREIAERMGFAADEVELIAQLVRWHLLLADIATTRDPDDPATIDALTEHIDTPEALALLTALTEADAKAASAKAWSSWRAGLVLDLSRRARASLERGSVPPPFRVEEIEVPAAALAGGTSIVVEPVGDGARVTTVAPDRVGLLADVAAMFALRRVPVRAARIWSQGDYGVSVWDVADEFLDAGALRNQLDGIAARRVDPATRLAPRLVNEGELAPTVVVRPEASDHATVVEVRAGDRLGVVYQVSAALAGLDMTVRSAHVSTLGPQAVDVFYVQEASAGALSETRAAEAAHAVRRAISSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMW9</accession>
    <name>A0A0Q8UMW9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">S1 motif domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_21160</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896118.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46347">
        <property type="protein sequence ID" value="KRC46347"/>
        <property type="gene ID" value="ASE19_21160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1209444at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019307">
        <property type="entry name" value="RNA-bd_AU-1/RNase_E/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004659">
        <property type="entry name" value="RNase_E/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30001">
        <property type="entry name" value="PTHR30001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10150">
        <property type="entry name" value="RNase_E_G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00757">
        <property type="entry name" value="RNaseEG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="S1 motif" evidence="7">
        <location>
            <begin position="477"/>
            <end position="561"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="855"/>
            <end position="937"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="998"/>
            <end position="1091"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="46"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="170"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="201"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="260"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="287"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="318"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="367"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="884"/>
            <end position="899"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1019"/>
            <end position="1033"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1091" mass="114764" checksum="B0ECD8D91EAC7FD4" modified="2016-01-20" version="1">MTDAPTDALNETPESVPASATATETPAPAAEAPAAEAPAKPAKKAAAKKAPAKKAPAKKAAAKKTTAKAAPAEGADGEAPAKPARKAPAKKAAAKKTTAKATAKAKPADSEQLVLTPEVEAPAEAAAAAETSGATEAPSAAVLFQAPPKVTTRKRSQAKPKPKVEEPTEEPAEDPVDDEAAEAVEAVETPEVADAETPETPETLETPEADADGEESDEDDDEDDETEGADGPNGPARRRRRRGGRRRRKPAGAGQGGQDGDDAEGDEDEDDESTEAAADAPAEGQAGNRSGNRSGNANSNRNGNRNGPKSGNAAGDKPGDKAGDKAAAKSDGEGESAESGDDAEDNEGGQGGQGSSSSRRRRRRRRAGEGGGGDDSGDDPENTVTRVRKPRSADDEITSIAGSTRLEAKKQRRREGREAGRRRVPIVSEAEFLARRESVERVMAVRQRKDLTQIAVLEDKVLVEHYVARESQTSLIGNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEVNWAALGHKEGAPRKIESVLQSGQTVLVQVSKDPVGHKGARLTSQVSLAGRFLVYVPDGTTSGISRKLPDTERSRLKNLLKEIVPDTAGVIVRTAAEGASEDELTRDVERLKARWEDIEAKVAKGNAPQLLYGEPDLTLKVVRDLFTEDFAKLVVQGDEAWKTVSDYVDQVAPDLAERLERHDPSGGAPDLFSQYRIDEQIAKGLDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRMVECLGRDRTRHQVAEVTSLGLVQMTRKRIGTGLLEAFSENCSHCQGRGIVVHDLPVEPKRSAGGNGGGNGGNAGNAGNSGGDGDEPRRNNRRRKGRGQGGENAADSTSEGSDAAPKPVPTPKDVAAMAKHHDDEAPAEGEVAAVPVPEVVEAAAEVEVVVEDAPVEEAPVEDAPVEDAAVEDAPVEDAPAEEVVEAAAPLEEPEAVVPEPEVEPTPEPVATTTVVTRTRTRRSAASRPAGPPPAVEAAEETPAETPAETSDGSADADEPAATDEPHVEHVPIKKKGGARKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN12</accession>
    <name>A0A0Q8UN12_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 6 7">50S ribosomal protein L19</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6 8" type="primary">rplS</name>
        <name evidence="8" type="ORF">ASE19_20040</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 6 7">This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6 7">Belongs to the bacterial ribosomal protein bL19 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895934.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46159">
        <property type="protein sequence ID" value="KRC46159"/>
        <property type="gene ID" value="ASE19_20040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1698718at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00402">
        <property type="entry name" value="Ribosomal_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038657">
        <property type="entry name" value="L19_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001857">
        <property type="entry name" value="Ribosomal_L19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018257">
        <property type="entry name" value="Ribosomal_L19_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15680">
        <property type="entry name" value="PTHR15680"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01245">
        <property type="entry name" value="Ribosomal_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002191">
        <property type="entry name" value="Ribosomal_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00061">
        <property type="entry name" value="RIBOSOMALL19"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01024">
        <property type="entry name" value="rplS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01015">
        <property type="entry name" value="RIBOSOMAL_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 8" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00402"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="120" mass="13343" checksum="5FC9AF292DEAC6D6" modified="2016-01-20" version="1">MSKPSPAVVTEIGNAAKRDDVPAFRAGDTIKVHVKVVEGSRSRVQVFQGVVIRIHGSGVGRTFTVRKVSFGVGVERTFPLHSPIFEQIEVVTRGDVRRAKLYYLRNLTGKKAKIKERREA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN21</accession>
    <name>A0A0Q8UN21_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">SsrA-binding protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Small protein B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">smpB</name>
        <name evidence="4" type="ORF">ASE19_21425</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA; the nascent peptide is terminated with the 'tag peptide' encoded by the tmRNA and targeted for degradation. The ribosome is freed to recommence translation, which seems to be the essential function of trans-translation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="3">The tmRNA-SmpB complex associates with stalled 70S ribosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the SmpB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896164.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46394">
        <property type="protein sequence ID" value="KRC46394"/>
        <property type="gene ID" value="ASE19_21425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1720952at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070929">
        <property type="term" value="P:trans-translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09294">
        <property type="entry name" value="SmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00023">
        <property type="entry name" value="SmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023620">
        <property type="entry name" value="SmpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000037">
        <property type="entry name" value="SsrA-bd_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020081">
        <property type="entry name" value="SsrA-bd_prot_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30308">
        <property type="entry name" value="PTHR30308"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01668">
        <property type="entry name" value="SmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74982">
        <property type="entry name" value="SSF74982"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00086">
        <property type="entry name" value="smpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01317">
        <property type="entry name" value="SSRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0694">RNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="170" mass="19047" checksum="A5D39D7121FAC057" modified="2016-01-20" version="1">MAKGKSGASGSKGDEGGRKLVASNKKARHDYHIEDTFEAGLVLQGTEVKSLRLGRASLVDGFVDIDRGEAWLHAVHIPEYAQGTWTNHAARRKRKLLLHREEIDKIERKVSEKGHTVVPLALYFVKGRAKIEIGLAKGKKSWDKRQAIAERTADREKEEAIGRRLKGMRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN54</accession>
    <name>A0A0Q8UN54_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DUF3817 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_21570</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46422">
        <property type="protein sequence ID" value="KRC46422"/>
        <property type="gene ID" value="ASE19_21570"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023845">
        <property type="entry name" value="DUF3817_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12823">
        <property type="entry name" value="DUF3817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03954">
        <property type="entry name" value="integ_memb_HG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="51"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="84"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="135"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3817" evidence="8">
        <location>
            <begin position="17"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="17189" checksum="466254EF82D935F1" modified="2016-01-20" version="1">MEGRAGRRGDQVTTPTRLFRTVAIAEAVTWTGLLFGMFLKYGPAENETGVRIFGMAHGVVFVAYVVTTVVVWVDRRWSAGRGLLALFAAIPPLATLPLEWWAVRKGWLGDAWRLPAGATTSLPDRVVAWLLRNPLRGLAVGLVAVAALTGLALVVGPPTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN59</accession>
    <name>A0A0Q8UN59_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21615</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896198.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46428">
        <property type="protein sequence ID" value="KRC46428"/>
        <property type="gene ID" value="ASE19_21615"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275789at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="259" mass="26403" checksum="2C1521B6428A8253" modified="2016-01-20" version="1">MTTQSVLVDRTAAVATITMSAPALSLDSKVALRDALEDVAKDPAIRAVVLTGGGKAFCVGQDLAEHSAGLADGAEAAFATVREHYSPIVRSLLTMPKPVIAAVGGACVGAGLGFALACDYRVFAAGAKLGTAFTGIGLTFDSGLSFTLPRAVGDARAKELMLFGQMFTAEDGIAWGITGETVDTDQVLERAVALARQLAQGPTVAFAESKRLIVEGSGLGLDAALEAEAGAQTRCGETADHGGAVSAFLGREKPTFTGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNA1</accession>
    <name>A0A0Q8UNA1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21760</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896221.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46452">
        <property type="protein sequence ID" value="KRC46452"/>
        <property type="gene ID" value="ASE19_21760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1819702at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026928">
        <property type="entry name" value="FAX/IsoI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033468">
        <property type="entry name" value="Metaxin_GST"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012336">
        <property type="entry name" value="Thioredoxin-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17171">
        <property type="entry name" value="GST_C_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17172">
        <property type="entry name" value="GST_N_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01200">
        <property type="entry name" value="SUF1.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin-like_fold" evidence="2">
        <location>
            <begin position="19"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="domain" description="GST_C_6" evidence="1">
        <location>
            <begin position="172"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="240" mass="27441" checksum="14FF7ABB29C81E32" modified="2016-01-20" version="1">MTITLYGYGPAWGLACVSPFVTKVTNYMTMAEIPFTFVQQDPTTLHKDSPTAKLPRIVDEDGTQVHDSTRIIQYLKDKYGDKLDASLSPAEHAQGLAFQRMVEEYTYWTGIIQPRWRYPAEFEKYIPFMVGTDNPPPPVREFLYALRDRIADQQDKQGTGKRPDEDVLASLKEDLDAIEAFIGDKQFLLGDQATSYDATVYSTLRQITDPTPWDWAGRDYARSKTGLVAYENRMRDRFGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNL2</accession>
    <name>A0A0Q8UNL2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF5709 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22485</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896341.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46572">
        <property type="protein sequence ID" value="KRC46572"/>
        <property type="gene ID" value="ASE19_22485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1593638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043763">
        <property type="entry name" value="DUF5709"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18970">
        <property type="entry name" value="DUF5709"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5709" evidence="2">
        <location>
            <begin position="98"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="153" mass="16387" checksum="5986A943945DD61F" modified="2016-01-20" version="1">MSTNEPQDYSDDYSADDEDQLQPEDTLADDDVDDELDRGYSPPEGYSAAQKYGTTPWEQAHDRPLDDRLAEEVPEPDPLAEPEDEDGQPHDADEEGFEVGDARAGRLVAPDAGLGDDLEKDLVAEDVGIDGAAASAEEAAMHVVPDDALGASD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNW9</accession>
    <name>A0A0Q8UNW9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Abhydrolase_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_21975</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 'GDXG' lipolytic enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896414.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46645">
        <property type="protein sequence ID" value="KRC46645"/>
        <property type="gene ID" value="ASE19_21975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1587940at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002168">
        <property type="entry name" value="Lipase_GDXG_HIS_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033140">
        <property type="entry name" value="Lipase_GDXG_put_SER_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01173">
        <property type="entry name" value="LIPASE_GDXG_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01174">
        <property type="entry name" value="LIPASE_GDXG_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Abhydrolase_3" evidence="4">
        <location>
            <begin position="75"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="297" mass="31048" checksum="84EEF877B950DE04" modified="2016-01-20" version="1">MRAVHVPLPAARVLVRRVVRPVLGTRLTPARQRQVLDTLMRFAVLPEGTVRSAATLGGVPAERIVTAASNPSRALLYLHGGAYLVGSPVTHRAVAAHLAHATGAVAHVLDYRLAPEHPYPAAVDDALAAYRALLDSGLTPEQVVVAGDSAGGGLTLALALRARSVGVPLPAALGLISPWVDLSLTGLDETVDDPLLSLPWLELGASSYAGSSVALPEVSPLHADLTGLPPLFVHAASDEMILPVVESFVAAARSAGVDVTYERLEGHWHVTHLFAGMVREATDVVQQLGGWLRGALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UP43</accession>
    <name>A0A0Q8UP43_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22590</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46591">
        <property type="protein sequence ID" value="KRC46591"/>
        <property type="gene ID" value="ASE19_22590"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015293">
        <property type="term" value="F:symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039672">
        <property type="entry name" value="MFS_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11328">
        <property type="entry name" value="PTHR11328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="175"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="225"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="256"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="289"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="312"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="352"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="397"/>
            <end position="420"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="436" mass="45072" checksum="BF39302E13B33CA6" modified="2016-01-20" version="1">MSPRIGYGAGSVATGAFGTVPGLMLLPYLTDTLAVPALLAGAIVFLPKAWDVVLNPVAGRISDRTVDPRGPRRPWLLRAGFALAACFALLFAAPDLGSQAFDAAWVLVAFLACATAYAFFQVPYVAMPAEIATTSAERTRLMTWRVAILAFTILLAGASAPAIRDAIGGRDGYRAMGVVMALLILTGALLAYRGTRAAPIGTVAPGAGTLRDQLRIVAGARDFRVLLTTFVLQALATGCMLAAVDYVAGDVLERDGAATVLFVCFVGPALLLTPAWATIGRRTGKRRGYLLASLVLASGAALVLPASSGSAVLVYVAVGLVGVGYAGVQVFPMAMLPDVAAVDARRTGSSRIGVYTGVWTAGETLGLALGPGLFAVVLALGGYVSSDADDVLQPDSAVTAITLGFSLLPALLVLLSLLWLRGYTLDETEVDRVDVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UQU8</accession>
    <name>A0A0Q8UQU8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">UPF0102 protein ASE19_20005</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20005</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the UPF0102 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895929.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46153">
        <property type="protein sequence ID" value="KRC46153"/>
        <property type="gene ID" value="ASE19_20005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2044249at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00048">
        <property type="entry name" value="UPF0102"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003509">
        <property type="entry name" value="UPF0102"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34039">
        <property type="entry name" value="PTHR34039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02021">
        <property type="entry name" value="UPF0102"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="122" mass="13501" checksum="0FA68C992806818D" modified="2016-01-20" version="1">MTTTAQARRAIGAYGEERAARYLVALGMMVLERNWRCDEGEIDIVLRDGATLVVCEVKTRTSDVAGTPHEAITATKLARLQRLGERWAAAREIHPDGIRIDLVAVLRPRRGAPVIEHVPGLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UQZ1</accession>
    <name>A0A0Q8UQZ1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L28</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpmB</name>
        <name evidence="5" type="ORF">ASE19_20195</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the bacterial ribosomal protein bL28 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_038680308.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46185">
        <property type="protein sequence ID" value="KRC46185"/>
        <property type="gene ID" value="ASE19_20195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2062238at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.170.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00373">
        <property type="entry name" value="Ribosomal_L28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034704">
        <property type="entry name" value="L28p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026569">
        <property type="entry name" value="Ribo_L28/L24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037147">
        <property type="entry name" value="Ribo_L28/L24_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001383">
        <property type="entry name" value="Ribosomal_L28"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00830">
        <property type="entry name" value="Ribosomal_L28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143800">
        <property type="entry name" value="SSF143800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00009">
        <property type="entry name" value="L28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00373"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="61" mass="6887" checksum="20C59501FB914852" modified="2016-01-20" version="1">MAAVCDICDKKPTFGNNRPWSRKITKRRFDPNIQRVRAVVNGTPKRLNVCTGCIKAGKVTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUV4</accession>
    <name>A0A0Q8UUV4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Polysacc_synt_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_18290</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893269.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48868">
        <property type="protein sequence ID" value="KRC48868"/>
        <property type="gene ID" value="ASE19_18290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1385025at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029303">
        <property type="entry name" value="Polysacc_synt_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14667">
        <property type="entry name" value="Polysacc_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="53"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="90"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="119"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="174"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="304"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="338"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="368"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="394"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="427"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="456"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="domain" description="Polysacc_synt_C" evidence="7">
        <location>
            <begin position="341"/>
            <end position="476"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC48868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="497" mass="51419" checksum="124695B98F024148" modified="2016-01-20" version="1">MSLTAGADVGGHLRAVARGSAGTMAGAVLSTVAGFGLVLVVTRSVSPDTAGRFFAASAVFLVALAASGLGTDTGLARFVLRSGDPAPAVWLLRIAAVPVLVTSGLVALALALAWPDTRWFVWALPLAAASDLCLATVRAHAQFRSTVLIDRVVRPLVQLGSVAVVVTIDQSGAVLGGAWAAGYAVSALLSVRALRPVLRRGANRIGVGEERTSPRAFWQFTWPRAVARIAQMAVQKLDIVVVAWLLSPTDAALYAVATRFVVFGQLANQAVSTVVQPRFTMILAARGEEDPAALSRIFAVTTGWSMLLAWPVYLGVAAAPAGYLGWFGDAYVSGGTRAVAVVMCCGMLVAVASGPVDTLLLMTGRSGLSLANTLVALVLDMGLCLVLVPRMGIAGAATAWVAAVVVRCLLAMRQLRTDIGLAVEGRALLGTAALPIGCILVPVGAAQLAVGLTPTTWLLACAGAGTVYLWAMWRLRRPLSVDVFVSGLRPGGERVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUY5</accession>
    <name>A0A0Q8UUY5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptide ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_19170</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893416.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49014">
        <property type="protein sequence ID" value="KRC49014"/>
        <property type="gene ID" value="ASE19_19170"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1101128at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="20"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="357"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="56"/>
            <end position="63"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC49014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="376" mass="40668" checksum="29B639D0BFAEA010" modified="2016-01-20" version="1">MTTSVTPAATSAGTAAETFLSVRDLMVHFPTSDGLVKSVDGLSFDLQRGQTLGIVGESGSGKSVSSMAIMGLHWGTGAKISGQIVLDGTDLLELTPDQMRRKRGQDVAMIFQDPLSAMHPYFTVGNQIMEAYQVHNDVSKGDAKKRAIEMLDRVGIPNPDRRFSDYPHQFSGGMRQRAMIAMGLINNPGLLIADEPTTALDVTVQAQILDLLQDLQREFNSAIIIITHDLGVVAEMADDVLVMYAGRAVEHGPCRELLTHPEMPYTWGLLSSVPDVTGDTDARLIPIPGSPPSLLNPPTGCAFHPRCLHRDKVPGDLCRTTMPDLVPGQRGAHHTKRCHLADSDSIYQTEVLPEIAPDLAEEPAGPLVGEAPEEQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UW12</accession>
    <name>A0A0Q8UW12_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aminoglycoside resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19575</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895857.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46081">
        <property type="protein sequence ID" value="KRC46081"/>
        <property type="gene ID" value="ASE19_19575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1457558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019748">
        <property type="term" value="P:secondary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006748">
        <property type="entry name" value="NH2Glyco/OHUrea_AB-resist_kin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04655">
        <property type="entry name" value="APH_6_hur"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="277" mass="30128" checksum="78CA83E21CEF453E" modified="2016-01-20" version="1">MAGRVSLPPGLLDEWELTADGEPWTGFHASVVPVTTADGEPAALKVGLHDNEHLALQHWHGRGAVRLLRADPGRGLLLLERLPGPDLADHWDVEACEVVAGLYRDLHRPAVPQLRRLSSYAGEVAAALVDLSRDVPLPPRLVQQAGLLAARFAADPATDGTLVHTDLHYGNVLAAHRAPWLAIDPKPLSGDPHYEVAPLLWNRYDELSGRVRDGLRARFHAAVDAGGLDEHRARDWVVVRAMDLARQRLADPPGTPRRTPTPALLTMCVSIAKAVQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWL0</accession>
    <name>A0A0Q8UWL0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_22410</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896425.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46656">
        <property type="protein sequence ID" value="KRC46656"/>
        <property type="gene ID" value="ASE19_22410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014325">
        <property type="entry name" value="RNA_pol_sigma-E_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02983">
        <property type="entry name" value="SigE-fam_strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="17"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="102"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="168" mass="19025" checksum="878198F2885E442A" modified="2016-01-20" version="1">MPLEAVPDDGFDGFVAARGDALWRSAWLLTADRHGAEDLVQTALAKSWRAWERVGPDGFEAYVRRVMYTTYVSWWRRKWRGERPTEHLPEQAAAAEDRDTRNDLVAALDRLPRGQRAVVVLRYFEDLTEQQTAAVLGIGVGTVKSQCSRALTALRSSPHLRREESSDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWL6</accession>
    <name>A0A0Q8UWL6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">bPH_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20985</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46317">
        <property type="protein sequence ID" value="KRC46317"/>
        <property type="gene ID" value="ASE19_20985"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005182">
        <property type="entry name" value="DUF304"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03703">
        <property type="entry name" value="bPH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="domain" description="bPH_2" evidence="2">
        <location>
            <begin position="70"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="17543" checksum="BE37BEA0DFFA1D13" modified="2016-01-20" version="1">MNQLRDPAHRVSPRARTMWQLEAAVEAAVAVLAGGIASVVWVPGPWRWLLLGVLVVVSVASALVVPRWRYQVHRWEVSPTAVYTQRGWWARERRIAPMSRVQTVDFAQGPLARLFGLATVTVTTASAAGPLQIEGLDRDVALGLVDELTRKADLVEGDAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXP8</accession>
    <name>A0A0Q8UXP8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-nitropropane dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893506.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50037">
        <property type="protein sequence ID" value="KRC50037"/>
        <property type="gene ID" value="ASE19_15565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="275153at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018580">
        <property type="term" value="F:nitronate monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04730">
        <property type="entry name" value="NPD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004136">
        <property type="entry name" value="NMO"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03060">
        <property type="entry name" value="NMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NMO" evidence="1">
        <location>
            <begin position="8"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="355" mass="36926" checksum="D2D228197D0C1F04" modified="2016-01-20" version="1">MSEQLIRTPFTDLVGVPHPVVQTGMGWVSGPRLVSGTANAGGLGILASATMTFAELEQAIIEVKGRTDKPFGVNLRADAGDAGDRCQLLIDHGVKVASFALAPKPELIAKLKEHDIVVMPSIGAAKHAVKVASWGADAVMIQGGEGGGHTGAVPTTLLLPTVLDAVDIPVIAAGGFFDGRGLAAALSYGAAGVGMGTRFLLTQDSAVPDAVKELYLSKGLTDTVVTAKVDGMPHRMLRTELVESLEETSAVRRLGPTARRTLEFKKSSGMSWTELLKDGRAMKKAQGRTLGQMALAANTPTMLRAGLVEGDTSAGVLASGQVVGVIDDLPTCKELVERIVVQAAAELRRASAYVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXX9</accession>
    <name>A0A0Q8UXX9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16135</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893608.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50140">
        <property type="protein sequence ID" value="KRC50140"/>
        <property type="gene ID" value="ASE19_16135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1222882at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="132"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="166"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="195"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="24998" checksum="496A43DFC5246FE3" modified="2016-01-20" version="1">MTPLLSVLAPTEPAREALAMLRDPSNLHWYVVTFFGIVMYVYAAEVERRRYDVVAAGLAFFLMDVFNELVNSAWFHASDRAPLWIVTGDTAYLVLIGWSVEIIFLFLISGIEFVKFLPADRGMRILGVPNRWVFITWWSCVCVFVEVLLHRAGIFHWSWWYWDEPFLLPVVVLGYGTFFWIAATVFDMDSHRKRFAVVGAMFAVDVVLAVGLGFAGWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYA9</accession>
    <name>A0A0Q8UYA9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Long-chain-alcohol oxidase</fullName>
            <ecNumber evidence="4">1.1.3.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_15785</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a long-chain primary fatty alcohol + O2 = a long-chain fatty aldehyde + H2O2</text>
            <dbReference type="Rhea" id="RHEA:22756"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:17176"/>
            <dbReference type="ChEBI" id="CHEBI:77396"/>
            <dbReference type="EC" id="1.1.3.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.3.20" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893547.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50079">
        <property type="protein sequence ID" value="KRC50079"/>
        <property type="gene ID" value="ASE19_15785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="365211at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046577">
        <property type="term" value="F:long-chain-alcohol oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012400">
        <property type="entry name" value="Long_Oxdase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028937">
        <property type="entry name" value="Lg_Ch_AO"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="8">
        <location>
            <begin position="157"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="domain" description="GMC_oxred_C" evidence="9">
        <location>
            <begin position="505"/>
            <end position="635"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF05199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC50079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="646" mass="67836" checksum="045DB6BF572D8533" modified="2016-01-20" version="1">MVFTPRQVRAMGLIADTFATGGDGVPSPTQVGSHELALRIAEANPRAGELRQLKALLDLWDTRALGLALTGRPRRFSQLDQAGREQVLLSLSDAKVGAKRALFQGLKTASLFPYYMTGGDALWDGIGYPGPLGTADTPPPAVLTPEQVTRDSDLSCDVVVVGSGAGGGTAAGVLAASGLDVVVLEAGGFHDERDFDGGEETGFLQLYALAPQSTAEGQVQLVAGRGLGGGTVVNYTTSFRTPDHVREEWASHGATQFSGEEYAASMDAVCARLGVNTDHDKAAPRDAILERGARALGWDVDAMPRNVQGCDQDVECGRCGMGCRIGAKQSTAKTWLADAAAAGARILTGVDVRTVSTSFGRATGVVATTAEGHRVRVRARAVVVAAGAVQTPALLQRSGLSNPNIGRYLRLHPATAVWGRMDEPVDGWVGSMQSRYVDAHTDLDGTGYGVLYETAPLTPGFGTGFVNWRGSDDFRRRMVELKHTLGVAVIVRDRDPGGTVRIGRDGEPVVRYQLSPRDTDHLVQGLVGGARIAEAAGANWIATTHHRTVSYEPGRRGSIDTFESDIRTAGAAPATMALAALHIMGTARMGGSALSSAVDPDGQTWDVPGLYVADASCFPTASGVNPMISIESIAHMTATRLAARLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYB9</accession>
    <name>A0A0Q8UYB9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">rRNA methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893730.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50261">
        <property type="protein sequence ID" value="KRC50261"/>
        <property type="gene ID" value="ASE19_16835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1422015at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029064">
        <property type="entry name" value="L30e-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001537">
        <property type="entry name" value="SpoU_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00588">
        <property type="entry name" value="SpoU_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55315">
        <property type="entry name" value="SSF55315"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SpoU_methylase" evidence="1">
        <location>
            <begin position="121"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="267" mass="28773" checksum="9D8EF97DC2207DB3" modified="2016-01-20" version="1">MAELVEITSADDPRLADYRDLRDVELRKALEAEHGLFLAEGEKVVRRALEAGYDARSFLMAPRWLDGLADVLDRSPAPCYVISEALAEEVTGFHVHRGALASLHRRPLPSVDEVLAGARSVLVLEDLVDHTNVGAILRSGAALGFDAVLLAPRCADPLYRRSIKVAMGAVFSLPWTRLPDWYDALPDLSARGYTTVALTLAPDAVPIEEAVAGLDKVALVLGSEGHGLTSRWEQTADRRAIIPMAAGIDSLNVAAATAVACYVTARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYM6</accession>
    <name>A0A0Q8UYM6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">tRNA (adenine(58)-N(1))-methyltransferase TrmI</fullName>
            <ecNumber evidence="4">2.1.1.220</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_16600</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>adenosine(58) in tRNA + S-adenosyl-L-methionine = H(+) + N(1)-methyladenosine(58) in tRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:43152"/>
            <dbReference type="Rhea" id="RHEA-COMP:10365"/>
            <dbReference type="Rhea" id="RHEA-COMP:10366"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74491"/>
            <dbReference type="EC" id="2.1.1.220"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homotetramer composed of a dimer of dimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the class I-like SAM-binding methyltransferase superfamily. TRM61 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.220" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893890.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50362">
        <property type="protein sequence ID" value="KRC50362"/>
        <property type="gene ID" value="ASE19_16600"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031515">
        <property type="term" value="C:tRNA (m1A) methyltransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016429">
        <property type="term" value="F:tRNA (adenine-N1-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014816">
        <property type="entry name" value="tRNA_MeTrfase_Gcd14"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12133">
        <property type="entry name" value="PTHR12133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08704">
        <property type="entry name" value="GCD14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017269">
        <property type="entry name" value="GCD14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51620">
        <property type="entry name" value="SAM_TRM61"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0819">tRNA processing</keyword>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="5">
        <location>
            <begin position="109"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="265"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR017269"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR017269-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC50362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="298" mass="32343" checksum="FEBC3C64CF4B5B4F" modified="2016-01-20" version="1">MHRGPLRTGEWVRLVDGKGRRHNFALEPGKKFFSNKGHLEHDELIGREEGFTVTSSAGGEYLVFRPLLSEYVVSMPRGAAVVYPKDSAQIIAMADIFPGAHVVEAGVGSGALTCSLLRAVGPHGKVSSYERREEFADVARRNVTQFFGGDHPAWQLTLGDLAEALPASGERCDRIILDMLAPWDCLDAAADALLPGGIVCAYVATTTQLSKFVEAVRFHGGFTEPAPWESLVRDWHVEGLAVRPGHKMIGHTAFLVTARRMAPGERAPLKKRRPAPGAYGPDYDGPRPPGVPELATDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYV9</accession>
    <name>A0A0Q8UYV9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methionine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21115</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896109.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46338">
        <property type="protein sequence ID" value="KRC46338"/>
        <property type="gene ID" value="ASE19_21115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="605503at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003871">
        <property type="term" value="F:5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002629">
        <property type="entry name" value="Met_Synth_C/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038071">
        <property type="entry name" value="UROD/MetE-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01717">
        <property type="entry name" value="Meth_synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51726">
        <property type="entry name" value="SSF51726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Meth_synt_2" evidence="1">
        <location>
            <begin position="111"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="334" mass="33967" checksum="73F7FB29BDE5604C" modified="2016-01-20" version="1">MRATGIGSFPGDSQHAYDDALALVLGEVAVDGGLPYVPEVPGRGAIAAMTGRTLGLVAELDADLQPAGWRLTGTSGAPSLDQRRARSLLAQDLDALEERAADYTGPFKVQVTGPWTLAATVERPRGDKLLADHGARRELAQALAVAVADHVCDVRRRVPGATELVLQLDEPALPAVLAAAVPTASGFGRHRTVHPPEASAALEGVLSAAVGAGAVPWVHCCAPDVPVGLLRGAGAQGVLLDLGLLGADGHDAAAEALEAGATVALGVVPTSGELPTDKAVVERVLRWLDMLGLDPGTVGAQLLVTPTCGLAGATPADARRATELVRSVARSLSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5D7</accession>
    <name>A0A0Q8V5D7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CinA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18665</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893333.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48930">
        <property type="protein sequence ID" value="KRC48930"/>
        <property type="gene ID" value="ASE19_18665"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036653">
        <property type="entry name" value="CinA-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008136">
        <property type="entry name" value="CinA_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02464">
        <property type="entry name" value="CinA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142433">
        <property type="entry name" value="SSF142433"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00199">
        <property type="entry name" value="PncC_domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CinA" evidence="1">
        <location>
            <begin position="6"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="166" mass="16465" checksum="A3E6B165403EE649" modified="2016-01-20" version="1">MGSPADLVARLKELGATVATAESLTGGQVAARVTGVPGSSAVYAGGVVSYMTEVKVSVLGVRPATVAEHGVVSAQCAREMAEGVRRLLGTTYAVSTTGVAGPDRQEGKPVGTVFVGVAGPGGVQSFELALDGDRATIQHASVAAALSALADMIGSDGRPAEDSGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5H2</accession>
    <name>A0A0Q8V5H2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893380.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48978">
        <property type="protein sequence ID" value="KRC48978"/>
        <property type="gene ID" value="ASE19_18950"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359718" evidence="1">
        <location>
            <begin position="16"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="62" mass="6636" checksum="C6C2300FD4CB8051" modified="2016-01-20" version="1">MMRRLIQHRSVQSSACTAVILGASSTIGMPWALWVIWAALASIAVIQALRGDVNEGAEPSDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5W6</accession>
    <name>A0A0Q8V5W6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Steroid delta-isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10375</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894745.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52812">
        <property type="protein sequence ID" value="KRC52812"/>
        <property type="gene ID" value="ASE19_10375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1644255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12680">
        <property type="entry name" value="SnoaL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="13"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="124" mass="13326" checksum="A3CF187DDABF5E4C" modified="2016-01-20" version="1">MGASREKILETIQQYVDLVATGASADVVALYADGATVEDPVGTDVRTTRESIAEFYGALDGLEQSAKLLHVRVAGNEAAFAFELVTKAGDQTYTLAPIDVMTFDDDGRILSMRAFWSGEDMVVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V623</accession>
    <name>A0A0Q8V623_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF4190 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_09800</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894649.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52712">
        <property type="protein sequence ID" value="KRC52712"/>
        <property type="gene ID" value="ASE19_09800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2178365at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025241">
        <property type="entry name" value="DUF4190"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13828">
        <property type="entry name" value="DUF4190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="84"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="132"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4190" evidence="3">
        <location>
            <begin position="72"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="166" mass="16873" checksum="5EC0058ACE1342A5" modified="2016-01-20" version="1">MSEQPPLASPSGPDPAFEQYAAPAWGQASPEPGAGQPQGGPAPYPVGPPAGQQPYQVPPQYMSHPGATTHPLAVTSLVLGISSIVGIVLTPFLGVTLLAGVCSPFAIWLGVRSRREIRADPRRYGGEGIATGGLVTGIVGLVLGVIALLVVAAFVIFLVAIFDGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6A0</accession>
    <name>A0A0Q8V6A0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Demethylmenaquinone methyltransferase</fullName>
            <ecNumber evidence="4">2.1.1.163</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">menG</name>
        <name evidence="5" type="ORF">ASE19_10070</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a 2-demethylmenaquinol + S-adenosyl-L-methionine = a menaquinol + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42640"/>
            <dbReference type="Rhea" id="RHEA-COMP:9539"/>
            <dbReference type="Rhea" id="RHEA-COMP:9563"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18151"/>
            <dbReference type="ChEBI" id="CHEBI:55437"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="2.1.1.163"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Quinol/quinone metabolism; menaquinone biosynthesis; menaquinol from 1,4-dihydroxy-2-naphthoate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the class I-like SAM-binding methyltransferase superfamily. MenG/UbiE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.163" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894689.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52756">
        <property type="protein sequence ID" value="KRC52756"/>
        <property type="gene ID" value="ASE19_10070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1431378at2"/>
    <dbReference type="UniPathway" id="UPA00079">
        <property type="reaction ID" value="UER00169"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043770">
        <property type="term" value="F:demethylmenaquinone methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102094">
        <property type="term" value="F:S-adenosylmethionine:2-demethylmenaquinol methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102955">
        <property type="term" value="F:S-adenosylmethionine:2-demethylmenaquinol-7 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102027">
        <property type="term" value="F:S-adenosylmethionine:2-demethylquinol-8 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009234">
        <property type="term" value="P:menaquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01813">
        <property type="entry name" value="MenG_UbiE_methyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004033">
        <property type="entry name" value="UbiE/COQ5_MeTrFase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023576">
        <property type="entry name" value="UbiE/COQ5_MeTrFase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01209">
        <property type="entry name" value="Ubie_methyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01934">
        <property type="entry name" value="MenG_MenH_UbiE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51608">
        <property type="entry name" value="SAM_MT_UBIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01183">
        <property type="entry name" value="UBIE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01184">
        <property type="entry name" value="UBIE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0474">Menaquinone biosynthesis</keyword>
    <keyword evidence="1 4 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 4 5" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0830">Ubiquinone</keyword>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="4">
        <location>
            <begin position="102"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="229" mass="25121" checksum="5FAF30490E9573AE" modified="2016-01-20" version="1">MPRAELDKQPADVRRMFDAVAKRYDLTNDILSFGQDRRWRKEVLAAVDPSYGDRVLDLAAGTGTSSQPFRDAGATVIPCDFSVGMLQVGKQQLPHLPFTAGDGTKLPFRDDTFDAVTISFGLRNIVDPLAGLAEMRRVTKPGGRLVVCEFSHPTWKPWRTVYIEYLMKALPPVARAVSSAPDAYVYLAESIRAWPDQAGLAAMIGDAGWTGAEWRNLSGGIVTLHRATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6I5</accession>
    <name>A0A0Q8V6I5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sulfotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10620</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894789.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52856">
        <property type="protein sequence ID" value="KRC52856"/>
        <property type="gene ID" value="ASE19_10620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1555988at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="385" mass="43470" checksum="DDED5C973642BB12" modified="2016-01-20" version="1">MSEARQRADIGTFEDICDAATRTTGLTDFGFADAPGHEEAFRVLVEDLAAPTAGLTGVGNYFMRSQVKSALVARQLTQARFAEFPQHADVRIERPIFVLGLPRTGTTALSRLLCADPGHQGLEMWLTEFPQPRPPRETWEDDPIFNAMQGAFKEHHITNPEFMGIHYSDATEPEECWRVLRQTGKSIGFESLAHVPEYSRWLATQDWTDAYERHRQNLQLIGLNDQDQRWVLKNPSHLIALDALMTVYPDALVVMTQREPVTSVASACSLSAEATAGHSTTFVGETLGRDQLGHLTRQWHAFWQARAKYDESQFFDVDYRDFVTDPVGTVGAIYDAFGLEWSDAAQDAVRQLDEESRNGPRRPSHKYDLADYGITEDEVRESFTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6J7</accession>
    <name>A0A0Q8V6J7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_10720</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; fatty acid beta-oxidation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894807.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52875">
        <property type="protein sequence ID" value="KRC52875"/>
        <property type="gene ID" value="ASE19_10720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="UniPathway" id="UPA00659"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006635">
        <property type="term" value="P:fatty acid beta-oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045002">
        <property type="entry name" value="Ech1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43149">
        <property type="entry name" value="PTHR43149"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="28615" checksum="6B7EB67D6F59AD3D" modified="2016-01-20" version="1">MSTVSCTITDGIAHVRLDRPDKLNALTLETLEDLVSTAQRLRRDKTLRAVIVSGEGDAFCAGLDFASVMRNPAGIAKAFLPRPLRGTNTFQEAPWAFRRIPVPVIAAVHGHCLGGGLQIALAADFRIATPDSRWSVLEGKWGLIPDMSGIQALKELVGIDQAKLLTMTAEVFDGSRALELGLVTRLDNDPLAGALRLANELSQKSPDAVAAAKRLFNDTWASSPRRTFARERVEQAYLLAARNTKAAREAAFKKAEAVYGPRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6W5</accession>
    <name>A0A0Q8V6W5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chemotaxis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15710</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893534.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50065">
        <property type="protein sequence ID" value="KRC50065"/>
        <property type="gene ID" value="ASE19_15710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1869017at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012853">
        <property type="entry name" value="CPT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF007531">
        <property type="entry name" value="CPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="11"/>
            <end position="18"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR007531-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR007531-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="20153" checksum="2A8B9EB78AB71734" modified="2016-01-20" version="1">MARGRIILLNGTSSSGKTSLGEALLGLLPDPWFLVPVDALGALRSTVHSRELDDDEVAAMLRRTRLGYHRAVAGLASVGNDVVMDYPLSEAWRLDDLLDVLDGYDVTLVDVRCDPAELERRERARGDRPVGLARSQELVHAHGDRDVTVDTTHASARECAAQVVAAMAALSGPKAFDRLRARRASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Z1</accession>
    <name>A0A0Q8V6Z1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two-component system response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_12635</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895668.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53205">
        <property type="protein sequence ID" value="KRC53205"/>
        <property type="gene ID" value="ASE19_12635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1020672at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="9"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="135"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="135"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="236" mass="26095" checksum="04981814404F8D3B" modified="2016-01-20" version="1">MSGTAAPARILVVDDDRAVRESLRRSLAFNGYDVHLAADGAEALAGIGAIAPDVVVMDVMMPKLDGLEATRALRAAGNDVPVIVLTARDAVGDRVEGLDAGADDYLTKPFALEELLARLRALLRRVIPAEDGGEEEVLSFADLTMNVTTREVVRGTRHIELTRTEFTLLEMFLRRPRRVLDRSFILEEVWGYDFPTTANSLEVYVGYLRRKTEADDEPRLIHTVRGIGYVLRATES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7F1</accession>
    <name>A0A0Q8V7F1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12335</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895087.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53160">
        <property type="protein sequence ID" value="KRC53160"/>
        <property type="gene ID" value="ASE19_12335"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1889094at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="48"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="173"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="226" mass="24841" checksum="5720E8E811A475B9" modified="2016-01-20" version="1">MTAPSEVPQPRSFLRNLIPILLFMLLCGIVGPIFLVAGLAVPDDEPDTGWLLPTGIAITALDVVIALAIANARTTKQRKMYQLRTHGRRAQGRVLSFEQTNVRVNDQPMLVIRLRIEGEGVTPFEAQVRSVVPDIQIPLLHAGTLPVLVDPETDEWEIDWEAARVITPTTAAAGISLTPPVPPADERPADERPAADRLAGLDDLLRRDLVSRDEYDAARARILDEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7T8</accession>
    <name>A0A0Q8V7T8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13085</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53286">
        <property type="protein sequence ID" value="KRC53286"/>
        <property type="gene ID" value="ASE19_13085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024520">
        <property type="entry name" value="DUF3558"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12079">
        <property type="entry name" value="DUF3558"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359791" evidence="2">
        <location>
            <begin position="38"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="217" mass="22335" checksum="75A42C0E4505F702" modified="2016-01-20" version="1">MKATADGYCAAMRRSGTTLATLLLLCGAGLSSCSSDGAEKTADKPADKPAGLPSVLPTDDPCQWFSTDEATDALTDAGAPASGDAIKATPDPLGPSDDRAECWYFGDSGDGGRLTLSLINSADGADNWRTSIEDLRQAEGGTIADDSMGFRTTLDEIGGLPALVRTALDGHGDCEAYVPTGEDAFLAVDLGVPGDDTPAECDAVRRTTSTVLDRLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V807</accession>
    <name>A0A0Q8V807_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">RNA helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_13160</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895762.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53300">
        <property type="protein sequence ID" value="KRC53300"/>
        <property type="gene ID" value="ASE19_13160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="643629at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014014">
        <property type="entry name" value="RNA_helicase_DEAD_Q_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51195">
        <property type="entry name" value="Q_MOTIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 10" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Q_MOTIF" evidence="9">
        <location>
            <begin position="3"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="7">
        <location>
            <begin position="34"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="8">
        <location>
            <begin position="220"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="385"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Q motif" evidence="5">
        <location>
            <begin position="3"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="432"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="462"/>
            <end position="494"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="494" mass="50604" checksum="20257A270007D3C1" modified="2016-01-20" version="1">MSSTFADLGVPSDLVAVLTADQITVPTPIQAATLPDSLKGRDVLGRGRTGSGKTYAFGIPLVARLAEGRTRPAPKRPRALVLAPTRELASQIAATIAPLAKAAGMSTTTVFGGVGQGPQVNALRNGVDILIACPGRLEDLIGQGHCSLADVQVTVLDEADHMADLGFLPAVRRLLDQTPKGGQRMLFSATLDGAINVLVKRFLANPAVHEADSAQSPVAKMDHHVLHVEREQRIPVLLDLVSAPGRTVVFTRTKHGAKALARQLNKNGVPAVDLHGNLSQGARTRNMEAFHSGAATTLVATDIAARGIHVDDVSLVVHADPPAEHKAYLHRSGRTARAGAAGTVITLMTSEQRRDVSDLTRAAGIKPTTTRISGSHHPVLLELAPGERSRPGGIDLGPSQPQGGNGGGGGGRRSGGGAKKPAAKKSGGQGGQAKGQGGQGGQRSGGQARSGQGAAKPAGQRSGGNRSRSRSRAAGSGSGSGSSHSASSFSSGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V844</accession>
    <name>A0A0Q8V844_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_13130</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53295">
        <property type="protein sequence ID" value="KRC53295"/>
        <property type="gene ID" value="ASE19_13130"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="43"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="87"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="128"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="156"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="197"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="231"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="274"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="321"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="354"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="383"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="416"/>
            <end position="435"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="468" mass="48016" checksum="602CBDF3AAFCD7E8" modified="2016-01-20" version="1">MFDGLDRRSVGYGDLVAHSVAVICPSASALSTAFSLHRVVGPGAWLSVLIGVGLCWVLAAAFGEFASRFTATGSLYTYAAKGLGPTAGLVVGCALLLGYLSLVDYGLADASNQVGRAAVAFGGAQPSAPVLALLVVLGAGVCLLVLWRGIRWSSRFAFSAEAVALATLLVVLATIAARHGVDLPAALSLEGAEPGKVLRGAAMVMTVVIGFESCAALAVEAEQPFRSVPRAMRTSVLITGGLLLGSTLVAGPIADHRLRGRWFAPGEVVSFPDGLVLLAIALSYVALAVCAWTALSRLVFAFAREGILPAVLGRTGRRSAIPGAALVATLPVVLAPPLVALARGDAPGAASYDMLVWATVILMTAYGITALAVVPFTHRLGEFTARTTTLACTGVVGTAVLTWVDLRTNFAQGDHDVLTVLAAVAVAGLCWRAVLARRDAVSGIGLHEAPLRSEVLVPGEPPGGEQRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8D6</accession>
    <name>A0A0Q8V8D6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_14090</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897039.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53464">
        <property type="protein sequence ID" value="KRC53464"/>
        <property type="gene ID" value="ASE19_14090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2018019at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032808">
        <property type="entry name" value="DoxX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13564">
        <property type="entry name" value="DoxX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="70"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="99"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="125" mass="12815" checksum="966DC2ECF309E619" modified="2016-01-20" version="1">MNVVVWIVTGLLAALFLMAGTTKLAKSREQLGTDPRMGWSQDLPAGMIKLIGAAEVLGGLGLVLPGALEVATWLVPAAAIGLAVLMAGAVVTHARRNEAASAGFNVVLLALAVFVAVERIGPQAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8H3</accession>
    <name>A0A0Q8V8H3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5 family acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897059.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53444">
        <property type="protein sequence ID" value="KRC53444"/>
        <property type="gene ID" value="ASE19_13975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1526822at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="221" mass="24014" checksum="477E14A81AACEA31" modified="2016-01-20" version="1">MARTTVPLTLDLLDALDAPCRSCLFWEREPVRRDGLSPAERAREKEAWVSEVLREWGSCGRVAVVDGEPVGYLTYAPAAFVPGAAAFPTAPVSADAVLLTTAWIRPGYAGGGLGRLLVQGMARDLTGRDGIRAVEAFARTGRAPAPPGGTSECVVPAEFLARVGFKTHRPHPRTPRMRMEMRSLVTWRGEMEAAWEKIVGVVRRPHGATAPVPREARNPRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V905</accession>
    <name>A0A0Q8V905_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06995</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895260.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53829">
        <property type="protein sequence ID" value="KRC53829"/>
        <property type="gene ID" value="ASE19_06995"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="213" mass="24127" checksum="7F7631D6407B0219" modified="2016-01-20" version="1">MSDPTAQLTRAEIEEFWATWLQINRDVEATGDWRPMAEWYAEDATYGWMYAPDEHFMAVGRDQIRDWAIGIEMDGLDGWHYDYVCTVIDEQKAMVVGFWKQRSGILDDDGKEFEILGLGGSWFGLKRVTEGADAGLVKIDWQRDWFDMPSTAHTFLEIIKADKAPDTLLKRMSVSGHGVPGHYRHEDLPSTVWPPPVEAGQYVTQAAAPEAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9A8</accession>
    <name>A0A0Q8V9A8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 9 10">Chromosomal replication initiator protein DnaA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dnaA</name>
        <name evidence="15" type="ORF">ASE19_14030</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'-TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 11">Belongs to the DnaA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53684">
        <property type="protein sequence ID" value="KRC53684"/>
        <property type="gene ID" value="ASE19_14030"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003688">
        <property type="term" value="F:DNA replication origin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006270">
        <property type="term" value="P:DNA replication initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006275">
        <property type="term" value="P:regulation of DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06571">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1750.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00377">
        <property type="entry name" value="DnaA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001957">
        <property type="entry name" value="Chromosome_initiator_DnaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020591">
        <property type="entry name" value="Chromosome_initiator_DnaA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018312">
        <property type="entry name" value="Chromosome_initiator_DnaA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013317">
        <property type="entry name" value="DnaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013159">
        <property type="entry name" value="DnaA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038454">
        <property type="entry name" value="DnaA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010921">
        <property type="entry name" value="Trp_repressor/repl_initiator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30050:SF2">
        <property type="entry name" value="PTHR30050:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00308">
        <property type="entry name" value="Bac_DnaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08299">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00051">
        <property type="entry name" value="DNAA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00760">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48295">
        <property type="entry name" value="SSF48295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00362">
        <property type="entry name" value="DnaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01008">
        <property type="entry name" value="DNAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9 10" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8 9 10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="13">
        <location>
            <begin position="185"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_DnaA_C" evidence="14">
        <location>
            <begin position="397"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="105"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="193"/>
            <end position="200"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="SMART" id="SM00760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC53684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="494" mass="55064" checksum="F0A4CF33FCACCB32" modified="2016-01-20" version="1">MVGDLQAHQRAWLQASKPVTLHGSTAIVAVPDDFTRKRLEGRLRGQLEDALTERFGHEVQLAVTVDSSLHHEPGFESTPRFDPVRYDDGPAYEPAEVDVPKVDLSTSRQVDSSTHDAPRTAAPAFETGYDAPERPAVLPSPGASTPGGGESRLNPKYTFETFVIGSSNRFPHAAAVAVSEAPGKSYNPLLVYGESGLGKTHLLHAIGHYVRTIYAGSKVRYVSSEEFTNEFINAIRDDRQDRFKRKYREVDVLLIDDIQFLAGKTQTQEEFFHTFNTLHNANKQIVLTSDRPPKLLEALEDRLRNRFEWGLITDVQAPDLETRIAILRKKAAMDRLTAPSDVLEFIASKIQTNIRELEGALIRVTAFANLNRQDVDMTLAEIVLKDLIPDGGEPEITAPLIIAQTAAYFGLTIEELTGPSRGRHLVMARQIAMYLCRELTGLSLPKIGAQFGNRDHTTVMYAERKINQLLGERRAVFNQVSELTNRVKMQARQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9G8</accession>
    <name>A0A0Q8V9G8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07390</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895330.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53898">
        <property type="protein sequence ID" value="KRC53898"/>
        <property type="gene ID" value="ASE19_07390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1890403at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="35007" checksum="FC0B2176CAFF6A61" modified="2016-01-20" version="1">MPSDFAYSSLRRLASAPGARHVIQRMRGEQDEIRLAIGRLESHLLDVRKPSRLEDAEFKVFSQFGEDGIIQHLVRSVAPAETTFVEIGTGDYRESNTRFLLQNNNWRGVVIDGGEAHVQFVTGTEMAWRYDVEPVSAFVTKENVNALISDNGLRGPIGLLSVDVDGIDYWLWDAIDVVEPAIVVSEYNALWGPDATITVPYDPSFVNVEAHYSMLYFGASLGALVHLAGKKGYRFVGCASNGANAFFVREDLAGDLPAHTARSGFREAHFLTGRNPDRTLSRERSIAKRLALIGQQPVIDVTTGQETTVAAAVGARGVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9I6</accession>
    <name>A0A0Q8V9I6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07480</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895346.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53914">
        <property type="protein sequence ID" value="KRC53914"/>
        <property type="gene ID" value="ASE19_07480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1819758at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="501"/>
            <end position="652"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="787"/>
            <end position="830"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1082"/>
            <end position="1335"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="681"/>
            <end position="733"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="896"/>
            <end position="1061"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="33"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="151"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="270"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="296"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="518"/>
            <end position="610"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="788"/>
            <end position="830"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="1094"/>
            <end position="1113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="1131"/>
            <end position="1184"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="1209"/>
            <end position="1226"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="1244"/>
            <end position="1259"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="1268"/>
            <end position="1294"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="1311"/>
            <end position="1327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1495" mass="158120" checksum="627C59445202EF34" modified="2016-01-20" version="1">MSSVTDDEPGSEDSGLDESRSERGKGRRGRLWRRHDKETAPPVGELDADDLQELLRRSHTSGMVVGEDSPEPTTPAVHEPPAELLGDASPDDVEGAPDAADDIAARVGSRTGPLDAVDHDDIDWGALVSPADSGGAQESDDVAGAKPEPDVDPEVDDEVEAVDEVEAVDEPVAEEAEETDAALEPEPEPEPTTTPAAEGESAADWAALIDRAVHREEPPAPAEGGLAARMARVRQEPSVAEYDGEAPPAWPAPRPLTDEGGESYDGNDWSAIISRATRTSMGDPLTDPLTDPLTDPLDEVADDPVDEPATQVLEEVAEEPDAEEPAAEEPAAEEPAAEAGPTEEPVTEDTVEADVPADDPAPRPSSLTGQLGDHHASDEEAGQRIIAAAFDGGFAEPTPVAAPKGLARLRRRNSPGAAPRPEARPLQEFVEPPMLEEPIAGIDQQADVPRRPAEVLAHVRAEIEAELTPTVDPEAQDTEGVTEAPANADVVAALAARLRRDAEMAAAEQAAERIAAEEAAQRASEARAEADRLAQEQAETAEAAHRARAEAEELARAEAAARLAAEQAARERAELADAESARREEAERHAVEQAERAAAAHAEREAAEATARQQADLAAAAAAARQEAEAAASTYADAARQAHEERAAAEDRARVMAEAAAVSAAEHAEFARRMLEEREAAERTSAEIAQARALAEEAARQQAALAQEAHRAAEAAEERARLLAEQAAASAEEHGALARQAVDERAAAEQAAAEHARLAQESHVARQAAEQAAMEQADLARIALETAEAAEQRSEEAAARAAEQAEARVAADESAAEHAQRAQQAHEARRLAEVAAREQLELASEAQAAAAAAHASAAALAEEKKAATEALALAAEFAADATRARSEAEARATSALAELGQAAANHQAALDALQTELVEARATALEHARARVDAEAAAAEQAAARAEAEARAAEFAEERERALAEANQAREAAKARAAELNLAREQAVADALQAREAAEARAAEQAAARAEAEARAGELAQERQDALAEAARVRAEAEAKASDLAHQVAQIRARLEAQQEAAVEPTPVPAPAAVWPVAVVQPEVSPQPEPEPEPELAAEPEPEIEEEPVAGLVEVEPVEEPAAEVEPFVVPEPEPEPEPEPEPEPEPEAIVEPEPEPEPEPEPEPEPEPEALVEPEPEALVEPEPEAVEFDRPPTLVEQWRAGIETVDETEDLVDIDADAADADPEPDLETPSPVGEDEPVQEPTQVAELDEEPTEEPAAEVEPFVVPEPEPEPEPEPEPEPEPEPEPEPEASVEPEVEPFVLPEPTVETAVEPEPTPEPEPAPVPVRRPSHADAGRDAVAAFASERPATTGRVVPFHSKRGNSSLAVIALLLAVACAAVVGQMAVKKTILDDVPLSATLTVVATILLMYALKAINSTRTVAIDEQGVLKVTFGDFSSQFDLTSPNTKIEQTGTPGSRNWRINILRRSMSPVAIDSRSVDAHTFLEALRQWRPDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Q8</accession>
    <name>A0A0Q8V9Q8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08375</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895501.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54069">
        <property type="protein sequence ID" value="KRC54069"/>
        <property type="gene ID" value="ASE19_08375"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="255" mass="27615" checksum="02425153948ABB4A" modified="2016-01-20" version="1">MTLLLTTVLVGATLSGCGDDGSQDGERRSVLVDPPDTPSEDECTQLAGDRSAGAATTEDPPAPGRYAFASRGVIETRRDGKVVERRQLPKTMDAYVTDARTVGGVSCFRVQNRLTGEIADTATFALRGEELFLVAVELQSGGDLVTYVPNPAIRSLDPKELEWTGTFAGTTQGDYQASVVGRRTIKVGGRRVRTVGVELRSTFAGDLQGWQTATTWLSVDEKLPVIIDSETVREYGLDQYRAKYHAVLLSVEPEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9S8</accession>
    <name>A0A0Q8V9S8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07550</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895358.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53926">
        <property type="protein sequence ID" value="KRC53926"/>
        <property type="gene ID" value="ASE19_07550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1271038at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="263"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="284" mass="30996" checksum="D40D63738D30E27F" modified="2016-01-20" version="1">MSTWQRVAGFAVAVAVVFAASFGIGRAVGPLDADTEEHGHDDRLSVTPASGLELDLARTRYDAGSQRLLFTIRDGSGEPVTAYDVQHEKQLHLIAVRRDLVGYHHVHPTLDTQTGQWQVPVDLTDGDWRLYADFLPTGGKAQVLEADIEVGTGRPTELRAVNDTAVLPGGYEVHLERTDDMATFHVTRDGEEVTDLEPYLGAYGHLVAIRAGSLEYVHAHPEDGEPGPEVGFHVELPEAGTYGLWLDFQHDGVVRTAAFMVEQGESADVPTEETTEQEGEGHDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAC5</accession>
    <name>A0A0Q8VAC5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15355</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896522.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51457">
        <property type="protein sequence ID" value="KRC51457"/>
        <property type="gene ID" value="ASE19_15355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="687646at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011044">
        <property type="entry name" value="Quino_amine_DH_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50969">
        <property type="entry name" value="SSF50969"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359843" evidence="2">
        <location>
            <begin position="24"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="411" mass="42979" checksum="62DA26C656D4979B" modified="2016-01-20" version="1">MLIKSGVLVVLSSLASASLVACGAESSPSSSPDPSKEPAEQAVGTEVSAPQPRLALSYDGGVLVLDATDGEVLLDQEVDGFVRLNPAGDGRHVLVSATGGLTALDTGAWTDEHGDHGHSWTTAPRLTDFTIAATEPGHVVPHDGRTTVFDDGTGAITAFDPADLADGVPELETFRAQEAHHGVAVQDGHGNLLMTVGDEESRSGIRLVTAAGNELASSDECPGVHGEAFAGDVALFGCEDGVLLVDGREITKVDAPDAYGRIGNQAGHATSPYVLGDYKVDPDAELERPTRVSVIDTRDASLRLVDLPASYTFRSLGRTPDGDALVLGTDGHLHVIDVRRATVVASVPVTASWREPLDWQQPRPLLEVVGGTAYVTEPATRQVHVVDLATRKVVDSLDVPQVPVELRAVSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAE9</accession>
    <name>A0A0Q8VAE9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08760</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895566.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54134">
        <property type="protein sequence ID" value="KRC54134"/>
        <property type="gene ID" value="ASE19_08760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1814691at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="215" mass="23014" checksum="3AEC152F06F363E7" modified="2016-01-20" version="1">MSTSGTWPFTLLEPADDFDEASYVALLGELRGFLDAFAGSSPDPAGTARLAADLRRWRTALAERHAPASSVPYGQLHGADDHGLAAVPAVEVHTEAPGTLDATVRFSRWYVGGGGAVHGGHLATTIDGLMGRTQMADGWIARTARLDVSYRALTPVDEPVHCEIRTRRTEGRKSFLHGRLFHGSTTYVEAEALFVRVARYPGSAREPGAGTLEAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAI7</accession>
    <name>A0A0Q8VAI7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08935</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895598.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54166">
        <property type="protein sequence ID" value="KRC54166"/>
        <property type="gene ID" value="ASE19_08935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="149255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="261"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="287"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="312"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="341"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="366"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="408"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="595"/>
            <end position="613"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="620"/>
            <end position="637"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="649"/>
            <end position="669"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="681"/>
            <end position="703"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="751" mass="77121" checksum="16D12759AB5871EC" modified="2016-01-20" version="1">MRMRVGLGVVGAVLVAAAAVLGLARLDVRTSLTSFLPAHDEQLASYQAVGEEFGAEPVVVLVETGERADPVLTTDRMPGLVRLEGELAGLPGVASVYGPGTTLNQVAGRAKDLLSELVGRRDAEIALARAKAHARGLSSAGVRTAGELARTRFDARYGPLLVSGMGGGLPTLGNQRFIDGVVYGDDGNPRGRWQFVVPRPQTVAILVRPSAGLDAAGLARLVDRVDGVVGGRTPDGTTTTVTGTAVIVAALSDRALADAPLLAVLAVAGLALCFAAAVWIRRWHRLLPLAVTLAGLAVSLSVFGWAGRPVTLGMIAFASVLLGVGSYYPTYALTGASRRTVVVVAGASAGSLGTLALSPMPLVHDIGLLLGVGVVVCLLLTLAVSPMVEVRRAPAQSLETARRGAPGLVRALALLSIVLAAWGWRVLPDIPVVTDVDHFAGGLAALDDARHAEDVLGSSGEIDVVLRGADTLTPATLAWMRDVEGVIARQHGDVMRAVIAPTTFLDFLGDEPTQEQVDAAVRLLPSYLSGAVLAPDRSVALMTYGVRLDDVSGLQALRTELVRSLPAPPDGAEVQLVGLPLVLAQGQDLLDEDRYTASLLGIAVAAAVLLLGLRRRADAVRAVVAALVATGWGFLLLDLSGRGLDPVTIALGTLTVAVGAEFTVVLAEASRQGSSVLARTVGLMAAASAIGYLVLLASGLAAVRTFGAELALGVGLAYAAARLVVAASTHVAAPPDAAVVVPVPEKELVDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBR2</accession>
    <name>A0A0Q8VBR2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminoglycoside phosphotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13100</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895751.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53289">
        <property type="protein sequence ID" value="KRC53289"/>
        <property type="gene ID" value="ASE19_13100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1457558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05154">
        <property type="entry name" value="ACAD10_11_N-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041726">
        <property type="entry name" value="ACAD10_11_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="32"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="356" mass="39339" checksum="31E465A4C6C8A933" modified="2016-01-20" version="1">MTAGDESRPVRSEDAFDVDAVAAWLGRGPVAEVRQFPGGASNLTYLLRMAEGPDLILRRPPAGTKARGAHDMGREFRIQSALAPVFPQVPTMVAYCTEDDSPIGSELYVMERLDGLIPRSEFGFPVSADQAGRLCDAAVDTLVALHSIDVAAVPGLAALNKGEGYVARQVGGWIQRLANARTDDTGDWSDITSWLQDNQPADVAQAMIHNDYRLDNMVLAPELLSDPTRIEIVGVLDWELATVGDPLMDLGCALAYWVQADDDDFFRLTRRQPTADPGMWTRQQVIDAYLARSGRSLTAEEWRFYEVFGLFRFAVIAQQIWYRYFHGQTTNEAYAAFGPAVAGFEARCRRILSGTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCA9</accession>
    <name>A0A0Q8VCA9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_05410</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894187.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54894">
        <property type="protein sequence ID" value="KRC54894"/>
        <property type="gene ID" value="ASE19_05410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1926714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043215">
        <property type="term" value="P:daunorubicin transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1900753">
        <property type="term" value="P:doxorubicin transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005894">
        <property type="entry name" value="DrrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025302">
        <property type="entry name" value="DUF4162"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13732">
        <property type="entry name" value="DUF4162"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01188">
        <property type="entry name" value="drrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="7"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="39"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="34550" checksum="2ADA8879D61C94FA" modified="2016-01-20" version="1">MTATNAVQAHGLVKTFGAFRAVDGIDLEVRRGEIFGVLGPNGAGKTTTLKMLATLLPIDGGEAEVFGVDVRREPHRIRQLVGVTGQYASVDENLTGAENLILFARLLGQRTPQARRTAADLLGRFGLEEAADRQIKNFSGGMRRRLDLAASLIARPPLIFLDEPTTGLDPRTRGQMWDTIRELVAQGSTILLTTQYLDEADQLADRIAVIDRGRKVAEGTPDQLKASVGSSTLHLRVADRDQTARAAAIVEQVLGEQPVLTPEAGGLTIALTDANRAADVLIALRQGEVDITTAAVRQPTLDEVFLTLTGHHADDENKEVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCB2</accession>
    <name>A0A0Q8VCB2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">YkuD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_04925</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894269.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54812">
        <property type="protein sequence ID" value="KRC54812"/>
        <property type="gene ID" value="ASE19_04925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="975147at2"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd16913">
        <property type="entry name" value="YkuD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005490">
        <property type="entry name" value="LD_TPept_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038063">
        <property type="entry name" value="Transpep_catalytic_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03734">
        <property type="entry name" value="YkuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141523">
        <property type="entry name" value="SSF141523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="29"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="domain" description="YkuD" evidence="5">
        <location>
            <begin position="124"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="58"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="64"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="247" mass="25372" checksum="9F5AC7A8425CDCEA" modified="2016-01-20" version="1">MGAHRAGPQGRHRAPVAGKRRAARVRPRYGRIAAFGAALSVTAVAVAGGFGLLPSGPDGAGAAASVSRTTTQAPAGSPTDTPTGTRTDARTTTPSPLADADGRSQVAAVSGSTSLPPASGKGRRVVFSEGRQRVWLVDAAGKVVRTYLVSGSLTDNLFEGTYAVYSRSRNAIGIDDSGTMEYFVRFTQGTGGAAIGFHTIPVDDGKPVQTLAQLGTPRSHGCIRQERGNAIALWEFAPIGTTVVVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCM8</accession>
    <name>A0A0Q8VCM8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">KAP NTPase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13785</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897091.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53411">
        <property type="protein sequence ID" value="KRC53411"/>
        <property type="gene ID" value="ASE19_13785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1668340at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011646">
        <property type="entry name" value="KAP_P-loop"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07693">
        <property type="entry name" value="KAP_NTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KAP NTPase" evidence="1">
        <location>
            <begin position="27"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="687" mass="75118" checksum="577476A1E1ECA682" modified="2016-01-20" version="1">MTTSSTSEPRWHDDPITDAGEDRFQRADFANHWAQLIRREHQPGSSIVYGLTGAWGSGKSSVLNLIANALAADASEWAVVYFTPWSTSDPDSLLAEFYVALSSALPANDRGKEARKKLMACATKALPLTRAIPYAGEAIASFGEQFLQDKPWSDAFGEASAQLQGLGIRVLVIVDDIDRLQPSELLDLLKVVRLLGRFPGVDYLLAYDEATLVASLQDSSRGEVTTAHARAYMEKIVQYPLALPELLASKIIALVDAGLTGILGAERAGRLDVSRIHKVVTDVLPSQLRTPRAVERFLAQVRQQFRLHDDGEIDDVDLILVTLLRMEFPDLFASLQGWRDELTGSSTRRWISKEKPDWSELFAKTDDGRDRKDAVTVVGAIFPATLHEGAGQVRRGRMAHKDYFDRYLVQSVPEGDIKDSAVATALSAAASGDGELLRALVLQPNVETRTLALRKINDRLFGHGDHPSTSVTPDLVRVLASIAAGTDEFDGGFLISPRRQATTALQGAAIQLLAVAPDADLLGLISTTEDPMLAMEVLWGLVRDESVPEDARERITDASREAAARVAPTVLANLRARDRANPAERVHFMINFVRSCGDFQSLRESVEAGIRAEEFTLADVAARFVHFSYPVGVTNPQPSGAGFSGSEFTELTGQAARDQDTTHGVAWDANSWEERRLFAESYLDGAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCN9</accession>
    <name>A0A0Q8VCN9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05190</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894222.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54859">
        <property type="protein sequence ID" value="KRC54859"/>
        <property type="gene ID" value="ASE19_05190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2068384at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="97"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="123"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="206"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="234" mass="23719" checksum="464A0EFE9917DFBA" modified="2016-01-20" version="1">MSNHRTERLRVAAPTLEPDPVFLGVLTELGASSRAAAPSTARSAGLRMIVATASVGVIATATWAAGAPIGRDTPLSPTDSPTQVEPSGPPSPGNVGTPQPDVSTSPGSPLSPGLPGKSTSRSDRAGDAPRHGRQDDRPGKHKGDDKGHKLGHDDDQGGTRDDDAPGNDQRRPGPDDDSQQGGPEGEGPEAKVDPSGDRNGSAALLPSTDDRGNSGHGQGSGSAGDRGQGRGHRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCP0</accession>
    <name>A0A0Q8VCP0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SGNH_hydro domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14730</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896925.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53577">
        <property type="protein sequence ID" value="KRC53577"/>
        <property type="gene ID" value="ASE19_14730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1247435at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01823">
        <property type="entry name" value="SEST_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037460">
        <property type="entry name" value="SEST-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37981">
        <property type="entry name" value="PTHR37981"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359933" description="SGNH_hydro domain-containing protein" evidence="1">
        <location>
            <begin position="31"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="SGNH_hydro" evidence="2">
        <location>
            <begin position="37"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="268" mass="27897" checksum="15AEB474FC3B836B" modified="2016-01-20" version="1">MSRSLRLLLSLGSVLSAAIVGLVAVPPAHAASPVYVALGDSYSSGVGTRSYIDDGTSCQRSTYAYPKLVATARAYALTFKACSGATTSTVTSSQLSALSTATDYVTLSVGGNDAGFTSVITECAQPGWMSDCDGSVNTAQSFINNTLPGRLSTLFASIKSKAPNAVVVIVGYPRLFMGEDCNAATFFSPAEETRLNATADLLNSKLSAAASAKGFKWANPTSRFVTHAVCDDVEWLNGLSNPISESYHPNKLGHSSGYKPLVQGLLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCS7</accession>
    <name>A0A0Q8VCS7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Response regulatory domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_14065</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897044.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53459">
        <property type="protein sequence ID" value="KRC53459"/>
        <property type="gene ID" value="ASE19_14065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="15"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="228" mass="24794" checksum="191832D471DD5865" modified="2016-01-20" version="1">MSSPAERGARRYEWRVAIVEDHMMQRKRTEELITAQAGLQVVWSGDTLPDFLGWVGTAPDQLRPHLLVLDLMVERGPSVNPDVVRALTRSGIKVLVLSAMASPELVRKILRAGIGGIAGKRDSEEDIVAAMWTVIGRGQWLTPELASVIAGDSDRPQLSDQEERALVLYASGLTLDAVAEALGVKKDTAKKYLSRVKAKYAAAGRPASTKLDLNAVAQQDGYLDPPSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCT3</accession>
    <name>A0A0Q8VCT3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05455</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894179.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54902">
        <property type="protein sequence ID" value="KRC54902"/>
        <property type="gene ID" value="ASE19_05455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1602415at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="225"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="376" mass="40600" checksum="39C6D992A0B968E0" modified="2016-01-20" version="1">MTVQQATATSPTAPGKLGDALDPAAIQTYLGELDTWLRVRRSELDELDRAALGAGRGGELAGDMSLALALWKAISDRYQLVFATWDGGRVLQQERERISALVWGRLDGATELPGGLAVSLPEAGRLCDALTGQLRTRLSLAPDADRSAARIRDLRAQLERIRDQVGLEPANSRDAAIATLAGLMSRLEALTAKAERGGDVGGMLGPLETEATTFERDLIVGNARRRDARSKVLSARELRADLEAREAALAKLAQTCVDTVDPAPRYAVPDVDLLGPVPVTPDEIEPYLQRLDRVSQAMEVAQHAYSAALEEHTQLVGLLDGYVTKARASGVAGHPDLAESERAARALLERRPCPMVVARQLVTTYQTWLSSTKETK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDS0</accession>
    <name>A0A0Q8VDS0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FmdB family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06890</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895242.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53811">
        <property type="protein sequence ID" value="KRC53811"/>
        <property type="gene ID" value="ASE19_06890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914830at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013429">
        <property type="entry name" value="Regulatory_FmdB_Zinc_ribbon"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09723">
        <property type="entry name" value="Zn-ribbon_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00834">
        <property type="entry name" value="CxxC_CXXC_SSSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02605">
        <property type="entry name" value="CxxC_CxxC_SSSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CxxC_CXXC_SSSS" evidence="2">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="114" mass="11364" checksum="259C64CE4A2A5478" modified="2016-01-20" version="1">MPTYQYRCSECGHAFEQVQSFSDDALTVCPECNGVLRKVFNSVGVVFKGSGFYKTDSRSSTTATTPAASSTSSDAGSSSSSSSTSSSDSSSKSSSGSSSSSSSSTSSGAAASPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE04</accession>
    <name>A0A0Q8VE04_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10505</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894766.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52833">
        <property type="protein sequence ID" value="KRC52833"/>
        <property type="gene ID" value="ASE19_10505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1528451at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025506">
        <property type="entry name" value="DUF4393"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14337">
        <property type="entry name" value="Abi_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="303" mass="32883" checksum="907CBB62E1DF6DC8" modified="2016-01-20" version="1">MTEDLDKDGLPRLPALTRPAVAESLPGLARVAGSAAMHTASWGVRTTTRNWLRVGKAVTSRDEAVSLIRDVGSYVNALGEVARQVSGGVPVAEALTRAGESLGATSERPVPIASPVVDGHVVASRPQTLRERGNELLEKSRDVWSKDDRHPAFDRILDELAPDEARILVMLLRNGPQPSVDIRTGGPIGMVSSQLVAPGLNMVGPRAGLRYLEQVPSYLNNLFRLGLVWFSREAVHDHMEYQVLEAQPDVLAALHSVKFAKVVRRSIHLTPFGEEFCKLALVDETVATSPDLPEHEAPPEIDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE21</accession>
    <name>A0A0Q8VE21_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Sulfotransfer_1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07355</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895323.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53891">
        <property type="protein sequence ID" value="KRC53891"/>
        <property type="gene ID" value="ASE19_07355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1555988at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037359">
        <property type="entry name" value="NST/OST"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000863">
        <property type="entry name" value="Sulfotransferase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10605">
        <property type="entry name" value="PTHR10605"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00685">
        <property type="entry name" value="Sulfotransfer_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Sulfotransfer_1" evidence="2">
        <location>
            <begin position="78"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="353" mass="39097" checksum="BDE16AA543381ECC" modified="2016-01-20" version="1">MVVLAEVPGAQVSLQCDVCIPPVLTVGTPEQMTKLGWSLRSEGHPLDACVNCSAHFAPRNRVARADAVPTTPDPDRLPNVIVIGAMKAGTTSMHNYLDVHPDVAVSTEKEMRFFSDPGALGWVGRYQDHFPTGTRIRVESSPHYTKFPVVPGVVDRMADLVPDAKLIYLVRDPVDRIVADYVEQLQWHHAHRTLDEEAVDAADPANAVMASSRYATQLEEFLRRYPAEQILVLDLADLGADVVGTMARVFTFLGLTPPDVSAEDYGRHNTLEEKYQIPAWVLKLRRGPLLRAVRRLPAGPRKMISMAAWRRSGNLVERPTLAPGTEARLKELLAPEAARLRALTGLPFEHWSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF69</accession>
    <name>A0A0Q8VF69_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895710.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53248">
        <property type="protein sequence ID" value="KRC53248"/>
        <property type="gene ID" value="ASE19_12870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2065424at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="152"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="19109" checksum="A935D9558A524046" modified="2016-01-20" version="1">MACCAAIAAVIGLVRAAWFRLLPDRRPVEPTFAPPAHRSADGTAPLRAEPAGVPRRRGLTGSALVGVAVGTAAYALAITILRATPVVRTLDGPWVVRDAGLVALVAVTLLAGLAGGGARSVPAVLLGAGVAWTELGLLDMHLLGLFELRVAALPLDLLLHGSGPLLVVLAAQRLARPRPRLETSTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGQ9</accession>
    <name>A0A0Q8VGQ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="17">Glutamate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">ASE19_02095</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <reference evidence="17 18" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[3Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:21137"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="14">Amino-acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the glutamate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892662.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56645">
        <property type="protein sequence ID" value="KRC56645"/>
        <property type="gene ID" value="ASE19_02095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5568at2"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00321"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051538">
        <property type="term" value="F:3 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015930">
        <property type="term" value="F:glutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006537">
        <property type="term" value="P:glutamate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00982">
        <property type="entry name" value="gltB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02808">
        <property type="entry name" value="GltS_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002489">
        <property type="entry name" value="Glu_synth_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036485">
        <property type="entry name" value="Glu_synth_asu_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006982">
        <property type="entry name" value="Glu_synth_centr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002932">
        <property type="entry name" value="Glu_synthdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001202">
        <property type="entry name" value="WW_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00310">
        <property type="entry name" value="GATase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04898">
        <property type="entry name" value="Glu_syn_central"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01645">
        <property type="entry name" value="Glu_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01493">
        <property type="entry name" value="GXGXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69336">
        <property type="entry name" value="SSF69336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50020">
        <property type="entry name" value="WW_DOMAIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0003">3Fe-4S</keyword>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-0288">FMN</keyword>
    <keyword evidence="12" id="KW-0314">Glutamate biosynthesis</keyword>
    <keyword evidence="8" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="10" id="KW-0408">Iron</keyword>
    <keyword evidence="11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="16">
        <location>
            <begin position="20"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="domain" description="WW" evidence="15">
        <location>
            <begin position="316"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00029440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KRC56645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1523" mass="164155" checksum="A375D9A94CD2519D" modified="2016-01-20" version="1">MHSFPPPQGLYDPRHEKDACGVAFVATLTGEASHDIVAKALTALRNLDHRGAAGAEANSGDGAGILLQVPDAFLRAVAADAGITLPVAGTYAVGTAFLPGDEGQVTKTRARIEEIASEEGLVVLGWREVPVNPDILGTMALSVMPTFTQLFVQAPGGAHGAGPLGGMDLERLAFCLRKRAERETEVYFPSLSSRTLAYKGMLTTDQLDNFFPDLRDERMASAIGVVHSRFSTNTFPSWPLSHPFRFIAHNGEINTVMGNRNWMRAREALLDSVTIPGDLERLFPICTPGASDSASFDEVLELLHMGGRSLPHAVLMMIPEAWENHTEMDAKRRDFYRFHSTMMEPWDGPACVVFTDGTQIGAVLDRNGLRPSRFWVTDDGLVVLASEVGVLDLDPATVVRKGRLQPGKMFLVDTEEHRIVEDDEVKAQLADENPYGEWLHAGMIQLDEIPDREHIVHTHASVTRRQQIFGYTEEELRVILTPMANTGGEALGSMGTDTPIAALSDKPRLLFDYFSQLFAQVTNPPLDAIREELVTSLYGSIGPEANLLQPTAASCRQISLPFPVISNDDLAKIRHINREGDHPGFITHVSRGLYDVHGGGAAMAARIDEICQEVSEAIAGGARIIVLSDRHSTADLAPIPSLLLTGAVHHHLVREKTRTQVGLLVEAGDVREVHHVALLVGYGAAAVNPYLAMETVEDLAREGYYVKTEPEQAVKNLIKALGKGVVKVMSKIGVSTVASYTGAQIFECIGLSQTVVDKYFTGTTSKLGGVELDVIATEVAARHAKAYPPAGIAPAHRELEIGGEYQWRREGEPHLFNPETVFRLQHSTRTGRYDIFKQYTSAVDEQSEKLMTLRGLFRFKDAGAFGRTPIPIDEVEPVSAIVKRFSTGAMSYGSISREAHETLAIAMNRLGAKSNTGEGGEDADRLHDPERRSAIKQVASGRFGVTSEYLTNADDIQIKMAQGAKPGEGGQLPGNKVYPWVAKTRHSTPGVGLISPPPHHDIYSIEDLAQLIHDLKNANPSARVHVKLVSEVGVGTVAAGVSKAHADVVLVSGHDGGTGASPLTSLKHAGGPWELGLAETQQTLLLNGLRDRIVVQTDGQLKTGRDVVIAALLGAEEFGFATAPLVVSGCILMRVCHLDTCPVGVATQNPTLRSRFSGKAEYVVNFFEFIAEEVRELLAQLGFRSIEEAIGQVEVLDTVEAVNHWKAQGLDLAPILHKVDIAATHFPDQDLRNTGTQDHALEKSLDVTEILPLAAAAIESGEPVRAQLQIRNVNRTVGTILGHEVTKKYGGAGLPDGTIDLTFVGSAGQSLGAFVPKGITLRLEGDANDYVGKGLSGGRIAIRPDRAAGFRAEEHIIAGNTIAYGATSGEIFIRGGVGERCCVRNSGATVVTEGVGDHGCEYMTGGRVVVLGKTGRNFAAGMSGGIAWVLDLKDFRVNGELVDLRPVSAEYAGELEGIVRKHFEETGSEVAEALLADWEAALPRFTEVMPRDYAKVLAVQAEAKAEGLDDDQTANKVMEVLHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGR8</accession>
    <name>A0A0Q8VGR8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_13770</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897149.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53677">
        <property type="protein sequence ID" value="KRC53677"/>
        <property type="gene ID" value="ASE19_13770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="20"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="208" mass="22632" checksum="2D60AC423E04E0A7" modified="2016-01-20" version="1">MAAEPTTPPVRRRGGPTKGDQREVQILEATRALLADRSINDLTIDAIAKAAGVSRTAFYFYFPTKQAVVAALLDGLWDEFGSTHAWLATDGIDHDALLEHHRLVAAVWREHAAILTCTTGAVLDYEPLAEWVERAHRRLVEALAAKIERDQAAGTAPTDIAPVALAEIVSSLRDARFPVLATLRGAELEQALHDLTVVVLRVVYGRVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGS4</accession>
    <name>A0A0Q8VGS4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HNHc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02230</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Rv1128c/1148c/1588c/1702c/1945/3466 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56666">
        <property type="protein sequence ID" value="KRC56666"/>
        <property type="gene ID" value="ASE19_02230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00085">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003870">
        <property type="entry name" value="DUF222"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002711">
        <property type="entry name" value="HNH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003615">
        <property type="entry name" value="HNH_nuc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02720">
        <property type="entry name" value="DUF222"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01844">
        <property type="entry name" value="HNH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00507">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNHc" evidence="2">
        <location>
            <begin position="334"/>
            <end position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="415" mass="45094" checksum="62544195327DBB77" modified="2016-01-20" version="1">MASAASVSLAVLDDEQLAAAVQGAARLRSQTDVLELALAAEAERRAVARDSGDTGTDEWLARLTGDRREVLRGGLRIARLLQERYATTAAALSAGEIRLEQARVIVNGLDVSADDATPAQQREAEERLLAKATGAATRSGVPMPPARLRRAVRRAYDQIDADLARRHFERSVRANHHRGASNTWLTLHDRGDGTFDGRFSIPELHGQILAGVLDRLTAPRRHGRDAVGAPVLDDVAGAEGSGLGWADKLGLAFCELIEHLPSDRLSRSLVTVMAMVDLDVLRSGLGVATTTTGADLTAGEVRRLACEAGIVPAVMGGASMPLDLGRTRRLHNDKQRQAYAVLHDTCAIASCDRPFAWCEIHHPQPWAHGGRTDLTNGLPLCWHHHRAAHDPTFELRSHSPTEWVLVRRPPPNRRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHB7</accession>
    <name>A0A0Q8VHB7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_03520</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892902.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56885">
        <property type="protein sequence ID" value="KRC56885"/>
        <property type="gene ID" value="ASE19_03520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2084223at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032808">
        <property type="entry name" value="DoxX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07681">
        <property type="entry name" value="DoxX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="170" mass="17684" checksum="61B85952FADEB5EC" modified="2016-01-20" version="1">MALSRLLARPLLASYFLANGVQDLKDAPARAKEAAPVTEVLAPAVDNATPEGLHVPQDPTTWVRISGALQLAAGAALATGKAPRLSAAVLGATLVPSTAAHHRFWEAATPEERKAQLVHFAKNASLAGGLLIAALDTAGRPGLAWRAQHAAHDARREAALLGTKVKARVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHH6</accession>
    <name>A0A0Q8VHH6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cytoplasmic protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_03865</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CsoR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892966.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56949">
        <property type="protein sequence ID" value="KRC56949"/>
        <property type="gene ID" value="ASE19_03865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1868412at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003735">
        <property type="entry name" value="Metal_Tscrpt_repr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038390">
        <property type="entry name" value="Metal_Tscrpt_repr_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33677">
        <property type="entry name" value="PTHR33677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02583">
        <property type="entry name" value="Trns_repr_metal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0186">Copper</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0678">Repressor</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="86" mass="9170" checksum="E44F9F35E3EDCD6B" modified="2016-01-20" version="1">MQLEPDEIKAIITRLKRANGHLASVIRMLEDGAECEDALMQLAAVSKAVSRGGYALVAAGLQKCLEEGGPDSVDAKKMEKLFLALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHK2</accession>
    <name>A0A0Q8VHK2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Pyridine nucleotide-disulfide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_04010</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 7">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ferredoxin--NADP reductase type 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56974">
        <property type="protein sequence ID" value="KRC56974"/>
        <property type="gene ID" value="ASE19_04010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021163">
        <property type="entry name" value="Ferredox_Rdtase_adrenod"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000362">
        <property type="entry name" value="FNR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5 8" id="KW-0521">NADP</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="9">
        <location>
            <begin position="2"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="6"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="184"/>
            <end position="185"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="349"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="356"/>
            <end position="358"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="356"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000362-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000362-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC56974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="438" mass="47230" checksum="50EAAEFFD9C0E8EB" modified="2016-01-20" version="1">MGGGPAGIYAADILTKAEDADVSVDILERLPAPFGLVRYGVAPDHPRIKEIIKALQRVLAKPEVRFLGNVEYGVDVKLEDLREFYDAVVVSTGAMADRDLGIPGEEASYGAADFVSWYDAHPDVPQTWPLEATSVAVVGVGNVALDVARVLAKTGDEMLVTDIPAHVHAGLKAKTITDVHVFARRGPAYAKFSPLELRELNHSPNVEVIVHPEGFDVDEHGMAHIAEHKSQKMVLNTLTSWVGAEPVGKPHRIHLHFAEAPTEIVTDADGRVTTLRTERTHSPNADGRVEGTGEVTDWDVQQVYRAIGYRSTALPGLPFDDRAAVIPNDGGRVLDLDGNPIPGTFVTGWIKRGPVGLIGHTKSDAAETVGHLLATTTETATARTPEDVDAYLAERDVEVVTHTSWELLDAHEIALGEAEGRARVKVATREEMLAAGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHS7</accession>
    <name>A0A0Q8VHS7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Sodium:proton antiporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_10090</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894692.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52759">
        <property type="protein sequence ID" value="KRC52759"/>
        <property type="gene ID" value="ASE19_10090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1194802at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015299">
        <property type="term" value="F:solute:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006814">
        <property type="term" value="P:sodium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006153">
        <property type="entry name" value="Cation/H_exchanger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018422">
        <property type="entry name" value="Cation/H_exchanger_CPA1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001607">
        <property type="entry name" value="Znf_UBP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10110">
        <property type="entry name" value="PTHR10110"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00999">
        <property type="entry name" value="Na_H_Exchanger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02148">
        <property type="entry name" value="zf-UBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50271">
        <property type="entry name" value="ZF_UBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0915">Sodium</keyword>
    <keyword evidence="5" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="1 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="54"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="83"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="112"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="178"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="230"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="264"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="298"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="337"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="372"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="domain" description="UBP-type" evidence="7">
        <location>
            <begin position="552"/>
            <end position="618"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="618" mass="65740" checksum="2A01A9920FF48AD7" modified="2016-01-20" version="1">MEIAFLLVAIAVVVLTVTALSERVEIPAPLTLVVVGVAASYVPGVPELRLEPEVVLLGLLPPLLYSASVNTSLVDFNANRGPILLLSVGLVAFTTVGVGVVVKLVIPDLHWALALAIGAVVAPPDAVAATAIGRRIGLPRRVVTILEGESLLNDATALVALRTALAASAVAWEVGLEFVVAAGGGAAIGGVVFVVVGFIRKKVTDPLLDTAISLVIPFAAYIVAEEIHASGVVAVVVAGLLLGHVAPILQTAPSRIAERTNWRTIAYVLENTVFLLIGLQADWLLAEVGDSEFGAGRIALACVAALATCVVLRLAWVFAASGLLLRRSSSQRTEEPVLWRSSFLIGWAGMRGVVTLAAAFTVPEDTAHREVLLVIAFAVVAGTLLGQGMTLPLLARRLDVEGPDPQDDALARATLLQQAAKKGLIRLNELAEDCDDPHQVKALIIQRIEQRNFAAWERLGTTEGQESPSDLYSRWRGEMIEAERRRVLEIRSTGAVPSEIVSEVLAMLDVEESMLDAADAARAELRTSSRMQRLDGCEDLATIPLLDPPPTLACAACLADGTAWVALRMCLSCGNVGCCDSSVGRHATAHFRATQHPVMRSVEPDEDWRWCYVHHQTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIH3</accession>
    <name>A0A0Q8VIH3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-oxoacyl-ACP synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08735</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895561.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54129">
        <property type="protein sequence ID" value="KRC54129"/>
        <property type="gene ID" value="ASE19_08735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="245" mass="24779" checksum="F7E1169F57552EEC" modified="2016-01-20" version="1">MTGLLEGRSAIVTGAAQGIGLAIATVLAEHGARVSIADLDGEKAAAAAAGIAGEARGVACDVTDEASVAGLVTGAVEAYGGLDVLVNNAGITRDASLRKMTLENFQAVVTVHLQGTWLGIRAASEVMREARAGSIINISSMSGKVGNPGQTNYSAAKAGIVGMTKAAAKELAHHGVRVNAIQPGLIRTPMTEAMTPEAWAATEATIPMRRAGEPEEIANVVAFLASDLASYMTGAVLEVSGGRGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VII3</accession>
    <name>A0A0Q8VII3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894913.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52983">
        <property type="protein sequence ID" value="KRC52983"/>
        <property type="gene ID" value="ASE19_11330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1054546at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="1">
        <location>
            <begin position="16"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="334" mass="35369" checksum="8D806F6AFF4F1730" modified="2016-01-20" version="1">MEQRTFGRTGRAASVVGLGTWQLGADWGDVSEADARAVLEASAEAGVTFYDTADVYGDGRSEQIVGRFLADHADDEGAGFTAVTKMGRRAEQVPASYVLDNFRAWLDRSRRNLGVDTIDLVQLHCPPSEVIDDDATYDALDTLVADGVIAAYGVSVETCAQALSAIARPGVQSVQIILNAFRLKPLDEVLPAAAAAETAIIARVPLASGLLSGRYDESTVFAADDHRSYNRDGSAFDVGETFSGVDYRTGIAAAADFTRLVDATFGGDVTPAQAAIAWCWQQPGVTTVIPGARSVAQAEANAAAGLVGALPADFLDGVRAIYDRDLREAIHPRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIM1</accession>
    <name>A0A0Q8VIM1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08905</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895592.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54160">
        <property type="protein sequence ID" value="KRC54160"/>
        <property type="gene ID" value="ASE19_08905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="787596at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="11"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="349" mass="37105" checksum="1E5FB7A60BBC403D" modified="2016-01-20" version="1">MSTMKAAVLKGPHTVVLEDIARPTITEPTDVILKVERTAICGTDLHPYESRLELEDDVVLGHEFLGTIVAAGPGVANFSEGDRVVASCVVSCGACYWCRRGNPGRCAGVRIFGMGITFGDLVGGQAEYVLVPNADLTLKAIPEGADDDDMLFVGDIITTGYEAVRRSIRPGDTVAIVGAGPVGLCAAMSAEVLGASQVFVVDRVPARLKEAEQYGAIPVNFDEVDPQDAVYDLTDWRGADLVIDAVGHETALQSATRLVAGGGTISIPGAYVEESIPLPFGELWIKGVTIEGGVANIVNYMDEVTTLIMAGKLRPSSLISHRMGLSEVSEAYRMFHEREATKIVLDPSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIQ2</accession>
    <name>A0A0Q8VIQ2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peroxynitrite isomerase</fullName>
            <ecNumber evidence="1">5.99.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Ferric nitrobindin</fullName>
            <shortName evidence="1">Nb(III)</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07185</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Heme-binding protein able to scavenge peroxynitrite and to protect free L-tyrosine against peroxynitrite-mediated nitration, by acting as a peroxynitrite isomerase that converts peroxynitrite to nitrate. Therefore, this protein likely plays a role in peroxynitrite sensing and in the detoxification of reactive nitrogen and oxygen species (RNS and ROS, respectively). Is able to bind nitric oxide (NO) in vitro, but may act as a sensor of peroxynitrite levels in vivo.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>peroxynitrite = nitrate</text>
            <dbReference type="Rhea" id="RHEA:63116"/>
            <dbReference type="ChEBI" id="CHEBI:17632"/>
            <dbReference type="ChEBI" id="CHEBI:25941"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
        <text evidence="1">Binds 1 heme b group per subunit, that coordinates a highly solvent-exposed Fe(III) atom.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Nitrogen metabolism.</text>
    </comment>
    <comment type="domain">
        <text evidence="1">Forms a 10-stranded antiparallel beta-barrel structure able to accommodate a hydrophobic ligand in its interior. In fact, this fold hosts the heme group, which is located in a wide surface cleft.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the nitrobindin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.99.-.-" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895624.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54192">
        <property type="protein sequence ID" value="KRC54192"/>
        <property type="gene ID" value="ASE19_07185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1524197at2"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0062213">
        <property type="term" value="F:peroxynitrite isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07828">
        <property type="entry name" value="lipocalin_heme-bd-THAP4-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01297">
        <property type="entry name" value="nitrobindin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012674">
        <property type="entry name" value="Calycin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022939">
        <property type="entry name" value="Nb(III)_bact/plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045165">
        <property type="entry name" value="Nitrobindin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014878">
        <property type="entry name" value="THAP4-like_heme-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15854">
        <property type="entry name" value="PTHR15854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08768">
        <property type="entry name" value="THAP4_heme-bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50814">
        <property type="entry name" value="SSF50814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0349">Heme</keyword>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="THAP4_heme-bd" evidence="2">
        <location>
            <begin position="13"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="GXWXGXG" evidence="1">
        <location>
            <begin position="21"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="1">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01297"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="164" mass="18488" checksum="D81006F4F3757E29" modified="2016-01-20" version="1">MAFELPDNLHPNCGPIAWMLGTWRGNGHGDYPTIDAFQFGQELIFTHDGRPFFHYMARAWIIDEAGEKVRDAAIETGFIRAVGEGRFEILLTHNTGIAEIWEGEADNGKFEWTTDAVARTETAKEYVAGKRLYGNVEGDLLYAFDMAAMGQPLQPHLWARLKRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIR4</accession>
    <name>A0A0Q8VIR4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MBL fold metallo-hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08215</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54208">
        <property type="protein sequence ID" value="KRC54208"/>
        <property type="gene ID" value="ASE19_08215"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041516">
        <property type="entry name" value="LACTB2_WH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17778">
        <property type="entry name" value="BLACT_WH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="13"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="257" mass="27450" checksum="71807A8E0000C8DA" modified="2016-01-20" version="1">MLAPNPGLMTLDGTNTWVLREPGSDRSIVVDPGPLADEHLDAVAAVAGQVDQVVVTHHHYDHTEAARSFAERMGCGVRGLDPVQCWRADPLRDGEVLSVGGLEVEVLTTPGHTTDSISLLVEADGALLTGDMVLGRGTTVIVHPDGDLGQYFDSIARMRALITDGRAASLWPAHGPVLPDGAAVLDHYVVHRRERLAQVESALTRLGLSPSALPADVAEDPVLPRQVVEVVYADVDESLWGAAEWSVRAQLAYLASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ02</accession>
    <name>A0A0Q8VJ02_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Polyketide cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23870</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893998.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57364">
        <property type="protein sequence ID" value="KRC57364"/>
        <property type="gene ID" value="ASE19_23870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1942328at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="170" mass="18913" checksum="D967A55106D18B33" modified="2016-01-20" version="1">MWGDRWGVTDDEVVRRYPCDELVPDPTLSAWRAVTVAAAPERVWPWIVQVRLAPYSYDWIDNLGRRSPRELRALPDPVPGDPFTASAGRPLGRVLAVVPGEHLTARIMGATMTYLLVPADAGRTRLVLKIVAAVPRWQAPLIAVGDLVMARRQLLNLKRLAEGRPDPPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ66</accession>
    <name>A0A0Q8VJ66_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Methylcrotonoyl-CoA carboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12415</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895102.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53175">
        <property type="protein sequence ID" value="KRC53175"/>
        <property type="gene ID" value="ASE19_12415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="123223at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034733">
        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011763">
        <property type="entry name" value="COA_CT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011762">
        <property type="entry name" value="COA_CT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045190">
        <property type="entry name" value="MCCB/AccD1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22855">
        <property type="entry name" value="PTHR22855"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01039">
        <property type="entry name" value="Carboxyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50989">
        <property type="entry name" value="COA_CT_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50980">
        <property type="entry name" value="COA_CT_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA carboxyltransferase N-terminal" evidence="1">
        <location>
            <begin position="12"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="CoA carboxyltransferase C-terminal" evidence="2">
        <location>
            <begin position="272"/>
            <end position="512"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="518" mass="55999" checksum="4223F0BB94025625" modified="2016-01-20" version="1">MSETPSTETELSLRELSADLRERLARVRQGGSEAARTKHTDRGKLLPRDRVDGLLDPGSPFLEVAPLAAYGMYGKDGDEYAVPSAGVVAGIGRVQGRNCLVVANDATVKGGTYYPVTVKKHLRAQTIAAENDLPCIYLVDSGGAFLPMQDEVFPDKEHFGRIFFNQANMSARGIPQLAAVMGSCTAGGAYVPAMSDETVIVRNQGTIFLGGPPLVKAATGEVVTAEDLGGGDVHARKSGVVDHLADDDAHALRILRGIVDTLPAPARRDAVEVEEPLEDPESIYDVVPSSTRTPYDVREVIRRLVDGSRFQEFKQLYGETLVCAFARIHGHQVGIVANNGILFSESALKGAHFIELCNQRGIPLLFLQNITGFMVGREYENRGIARDGAKLVTAVACSVVPKLTVVIGGSFGAGNYGMCGRAYDPRFLWMWPNSRISVMGGDQAANVLATVAGREDDDEFKAPIREQYERQGSPYYASARLWDDGVIDPADTRRILGMALEVTSAVESPAPHYGIFRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJD6</accession>
    <name>A0A0Q8VJD6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23935</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57414">
        <property type="protein sequence ID" value="KRC57414"/>
        <property type="gene ID" value="ASE19_23935"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041664">
        <property type="entry name" value="AAA_16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13191">
        <property type="entry name" value="AAA_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="781"/>
            <end position="846"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="848" mass="90839" checksum="19DFA0F4FF18F11B" modified="2016-01-20" version="1">MTAVLAALADAATGQGAGVALTGESGAGKSTLLEAALGEPSTLRVLRGHCDPLRTPRPLGPFRDLWTAGDLAAPPAGADLILPELCEQVFRALAEEPTVLAVEDLHWADGATVEVLRYLARRVEALPLALLVTYRDVEVGPRHAARPLLGEFARSEGLTTLALAPLSREGVATLVSDTGLDPDRVHALTGGNPFFVAEVAKDPGRPLPGSVRDAVLARTAEIDMHDFEVLQLVASAPDRLDDRVLPALGVDLPTLRRIDQTALLVRTPGGIVFRHELARQSIESTIPPGGGPPLHARLLDALERLEPREPAVLTHHAIAARDAVRAARYAREAATEAIRAGAHSDAAAFLEIALDNLSSAPAAERAALLLELSFQQYMTSRLPEALATVRATFPLWHESGDRAGLAAAHQAVAIYEYYSARRIPAESHVDQAAEIAREAGDVLLFGGARATRAYLAYFRGDVDLASDYLAEASTVAAEEQDAALEHRARLFSAASALAIRGDEARAELVASTEAARAAGYDELASTGYSNTAYLDVEQARYRAAERVLESSLPFAAERDIPICGHWQTGVRSRLNFQQGHWSAALEDAGTVLDAQGMPLATLWPLLVSGLVPMRRGERYDRAWFERALDLAGLLHEPNRWLAVYAALAEQEWTTGQPDARLGLPVVAELLAASDATSSWSAGALAVWLTRLGRPPAEVVAVAEPYRLALDGRPRDAASWWHRAGDPFAEAMALADVPDEEERLRAVKQLDRLGAVGTADRVRSDLRRDGVAAVPQRPRTSTRANPAGLTNRQLDVARLAARGLSNGEIASRLFISPKTVDHHVSAVLAKLDLPGRRAIVVQAEELGLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJE6</accession>
    <name>A0A0Q8VJE6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07795</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895401.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53970">
        <property type="protein sequence ID" value="KRC53970"/>
        <property type="gene ID" value="ASE19_07795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1241692at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360089" evidence="1">
        <location>
            <begin position="22"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="347" mass="36421" checksum="332572FC9B7F7DAD" modified="2016-01-20" version="1">MRLRRTAAATLGLLALVPALAACGDDGAAIAVGDVVEARQDDQFVGTGTESIVALPIGRLEISAGKPTTQLTADDTHQLEAIEAPAGSAFVPITWQYDAGTFGDYADYADTDTNPTIDLVADKASYRIPAPETSGRGAESFYVLVSGDGEDASLAVDFDGVTQTVVLGTGERDEGRAAPLYDLRAPSSQTTSCTAATKFTFEGVGRLPDYECKVGKPFRLPYAGGAWAEDGGTWYVVTLKTTLRRFNQASADLKSGGVYVAAGVDSSFKLGKLKPTKVIVDKTETVCPDGHLGGCSIQYLLVFGAGKKAPGTLRLAQTYDMALAQVFGEGDPAEELQITSKASIKLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK35</accession>
    <name>A0A0Q8VK35_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">DNA primase</fullName>
            <ecNumber evidence="14">2.7.7.101</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="primary">dnaG</name>
        <name evidence="17" type="ORF">ASE19_23620</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <reference evidence="17 18" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.</text>
    </comment>
    <comment type="subunit">
        <text evidence="14">Monomer. Interacts with DnaB.</text>
    </comment>
    <comment type="similarity">
        <text evidence="14">Belongs to the DnaG primase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.101" evidence="14"/>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893954.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57748">
        <property type="protein sequence ID" value="KRC57748"/>
        <property type="gene ID" value="ASE19_23620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1071997at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003896">
        <property type="term" value="F:DNA primase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016539">
        <property type="term" value="P:intein-mediated protein splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03364">
        <property type="entry name" value="TOPRIM_DnaG_primases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.580.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00974">
        <property type="entry name" value="DNA_primase_DnaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013264">
        <property type="entry name" value="DNA_primase_core_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037068">
        <property type="entry name" value="DNA_primase_core_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019475">
        <property type="entry name" value="DNA_primase_DnaB-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006295">
        <property type="entry name" value="DNA_primase_DnaG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013173">
        <property type="entry name" value="DNA_primase_DnaG_DnaB-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036977">
        <property type="entry name" value="DNA_primase_Znf_CHC2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030846">
        <property type="entry name" value="DnaG_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036844">
        <property type="entry name" value="Hint_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027434">
        <property type="entry name" value="Homing_endonucl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006141">
        <property type="entry name" value="Intein_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004860">
        <property type="entry name" value="LAGLIDADG_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034151">
        <property type="entry name" value="TOPRIM_DnaG_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002694">
        <property type="entry name" value="Znf_CHC2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10410">
        <property type="entry name" value="DnaB_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08278">
        <property type="entry name" value="DnaG_DnaB_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14528">
        <property type="entry name" value="LAGLIDADG_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13662">
        <property type="entry name" value="Toprim_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08275">
        <property type="entry name" value="Toprim_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01807">
        <property type="entry name" value="zf-CHC2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00766">
        <property type="entry name" value="DnaG_DnaB_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00400">
        <property type="entry name" value="ZnF_CHCC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51294">
        <property type="entry name" value="SSF51294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55608">
        <property type="entry name" value="SSF55608"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01391">
        <property type="entry name" value="dnaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50817">
        <property type="entry name" value="INTEIN_N_TER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="5 14" id="KW-0235">DNA replication</keyword>
    <keyword evidence="12 14" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1 14" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 14" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2 14" id="KW-0639">Primosome</keyword>
    <keyword evidence="11" id="KW-0651">Protein splicing</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13 14" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 14" id="KW-0808">Transferase</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Toprim" evidence="16">
        <location>
            <begin position="574"/>
            <end position="662"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="749"/>
            <end position="788"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="15">
        <location>
            <begin position="749"/>
            <end position="768"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KRC57748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="944" mass="104896" checksum="35ADF77F485134F8" modified="2016-01-20" version="1">MVGRIRDEDIAAVRERVKIDDVVSGYVTLRNAGGGSMKGLCPFHDEKSPSFHVTPSRGFFHCLAGETRVLTWDGPREIRELDGGTHRILGARGDWIDAPFKSYGVQRLHRITLTRNRQRKELYATDGHRWFIRSGKAQTGSREVLTTDLKPGARLVAKFPRSRIRRTTPSPFGIAHGFTYGDGTLNGTGSMALVCPPKDEAMLKWFPNSHTTERGDGNLLVHHLPKFFKDRPSLDESVPYLYGWLAGYFAADGCVAADGTVIMNSADRDDLEFFRTVCTRLGIATYGITTQTRLGLGAEPSELHRVHLVNEDLQEDFFLLDAHLSRFAASTKAFARRGWVVETVEETDRVEEVFCAEVEDGHAFTLEDNILTGNCFGCQEGGDVFTFLMKIDGLSFGEAVERMADKYGVQLRRDQSGFDERPKGPRRQRLVEAHAVAQQFYAEQLGTPDALQARQFLAERGFDQQAALHFGIGFAPRDGEALWRHLSGRKFTSEEAIAAGLVAMGRSHYDKFRGRLLWPIRETNGDTIGFGARRIFDDDRIEAKYLNTGETAIYKKSQVLYGIDLARKPIALSSQAVIVEGYTDVMACHLAGVTTAVATCGTAFGDEHARVLRRFLDDHAELRSEVVFTFDGDEAGQKAALRTFEGDQRFVAQTYVAVAPEGMDPCELRMKEGDAAVRELVATRRPLYRFVLENVIGRYDLDRADSRVDALRAGARLVASVRDKSKVDAFARELAGMVGVDMEQARAEVRRAAARGPEPDRNAARDRRTPASAPEAPAPRSSLPDLRDPRFGIERETLKLVLQQPIIIGRTSADIGANDFTHPTYRAVWELIAAAGGVAAGQNDPGWVSRVREGATDAALSSTISALAVEPIPVNKEIDASYVATHLFRLQELTALRRIDEVKSRLQRTNPIEHETEFNRMFGELAALEQHRRTLREKIIGSGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK69</accession>
    <name>A0A0Q8VK69_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">K+-transporting ATPase subunit F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14335</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896992.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53511">
        <property type="protein sequence ID" value="KRC53511"/>
        <property type="gene ID" value="ASE19_14335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008556">
        <property type="term" value="F:P-type potassium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043462">
        <property type="term" value="P:regulation of ATP-dependent activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011726">
        <property type="entry name" value="KdpF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09604">
        <property type="entry name" value="Potass_KdpF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02115">
        <property type="entry name" value="potass_kdpF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="29" mass="3189" checksum="6AA563D0D67FC0A0" modified="2016-01-20" version="1">MSIENVVALMISALLLGYLVVALILPERF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLL8</accession>
    <name>A0A0Q8VLL8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glucosamine-6-phosphate deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06360</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894465.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55056">
        <property type="protein sequence ID" value="KRC55056"/>
        <property type="gene ID" value="ASE19_06360"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1828393at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004342">
        <property type="term" value="F:glucosamine-6-phosphate deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006044">
        <property type="term" value="P:N-acetylglucosamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01399">
        <property type="entry name" value="GlcN6P_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006148">
        <property type="entry name" value="Glc/Gal-6P_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004547">
        <property type="entry name" value="Glucosamine6P_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018321">
        <property type="entry name" value="Glucosamine6P_isomerase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11280">
        <property type="entry name" value="PTHR11280"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01182">
        <property type="entry name" value="Glucosamine_iso"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01161">
        <property type="entry name" value="GLC_GALNAC_ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glucosamine_iso" evidence="1">
        <location>
            <begin position="11"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="27310" checksum="DAE429F6AE98E40F" modified="2016-01-20" version="1">MEVVPLRSGSEVAALAADVVEAVVRSAASPVLGLATGSTPLPTYRELVRRHEAGVGPSYDGVRCFNLDEYVGLPAGHPESYRATIARELTDALGIPADRVHGPDPTPEGLPTAGSRYEDALVAAGGVDVQVLGIGTDGHLAFNEPGSSLGSLTRLKTLTDETRHDNARFFGSIDEVPRHVLTQGLATILRARHLLLLATGSAKADALGAAVEGPLTASCPASVLQLHPHVTVLCDPGAAEGLVRREHYRAVYDAKPAWQGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLN6</accession>
    <name>A0A0Q8VLN6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Isochorismate synthase</fullName>
            <ecNumber evidence="3">5.4.4.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_06470</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>chorismate = isochorismate</text>
            <dbReference type="Rhea" id="RHEA:18985"/>
            <dbReference type="ChEBI" id="CHEBI:29748"/>
            <dbReference type="ChEBI" id="CHEBI:29780"/>
            <dbReference type="EC" id="5.4.4.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the isochorismate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.4.2" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894479.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55072">
        <property type="protein sequence ID" value="KRC55072"/>
        <property type="gene ID" value="ASE19_06470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1469584at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008909">
        <property type="term" value="F:isochorismate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044249">
        <property type="term" value="P:cellular biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005801">
        <property type="entry name" value="ADC_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015890">
        <property type="entry name" value="Chorismate_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004561">
        <property type="entry name" value="IsoChor_synthase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00425">
        <property type="entry name" value="Chorismate_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56322">
        <property type="entry name" value="SSF56322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00543">
        <property type="entry name" value="isochor_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chorismate_bind" evidence="6">
        <location>
            <begin position="104"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="199"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005297"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="381" mass="39722" checksum="B1B9EB994D2EC820" modified="2016-01-20" version="1">MAQRPITPAALTERPMLFASGEQAYVAAQVLDTRFTPDGADPGWADEVVASLGAGERAMCALSFAAGAPGLAHRVVGSEHALQRFEQGPDVDRSYDVTEFPTPDEYAAMVRTALERIATGALHKVVLGRCLDVVSEPPLVPAEIIDRLLTTRPGRYVFSVPLVSGSADGTAPDDGPILVGASPELLVRREGLEISCTPLAGSVPRSADPDEDARRAAGLQESGKDLAEHAFVVEAIVHALKEVCVEIEYPATPELLSTDTVWHLATPIHARLAAGADGPSALRLAQLLHPTPAVGGVPTAAANAVIADLEGDLRDWFAGCVGWVDADGDGEFAVTIRAAVMDGPRLRLFAGAGIVAGSDPASEVRETGAKLATMARVTGLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLT2</accession>
    <name>A0A0Q8VLT2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 11">L-aspartate oxidase</fullName>
            <ecNumber evidence="4 11">1.4.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">ASE19_07990</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the oxidation of L-aspartate to iminoaspartate, the first step in the de novo biosynthesis of NAD(+).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>L-aspartate + O2 = H2O2 + iminosuccinate</text>
            <dbReference type="Rhea" id="RHEA:25876"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
            <dbReference type="EC" id="1.4.3.16"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="9">
            <dbReference type="Rhea" id="RHEA:25877"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 11">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Cofactor biosynthesis; NAD(+) biosynthesis; iminoaspartate from L-aspartate (oxidase route): step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the FAD-dependent oxidoreductase 2 family. NadB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.3.16" evidence="4 11"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895439.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54007">
        <property type="protein sequence ID" value="KRC54007"/>
        <property type="gene ID" value="ASE19_07990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="153138at2"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00326"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008734">
        <property type="term" value="F:L-aspartate oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044318">
        <property type="term" value="F:L-aspartate:fumarate oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033765">
        <property type="term" value="F:steroid dehydrogenase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008202">
        <property type="term" value="P:steroid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037099">
        <property type="entry name" value="Fum_R/Succ_DH_flav-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015939">
        <property type="entry name" value="Fum_Rdtase/Succ_DH_flav-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005288">
        <property type="entry name" value="NadB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42716">
        <property type="entry name" value="PTHR42716"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02910">
        <property type="entry name" value="Succ_DH_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46977">
        <property type="entry name" value="SSF46977"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56425">
        <property type="entry name" value="SSF56425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00551">
        <property type="entry name" value="nadB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0274">FAD</keyword>
    <keyword evidence="5 11" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6 11" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_2" evidence="13">
        <location>
            <begin position="23"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="domain" description="Succ_DH_flav_C" evidence="14">
        <location>
            <begin position="442"/>
            <end position="528"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="540"/>
            <end position="559"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00029281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00029426"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU362049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC54007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="559" mass="58424" checksum="1A0D7BFC3E5FBFD9" modified="2016-01-20" version="1">MPEHLRLPGRLTAPAPGWTTRADVVIVGSGIAGLTAALRLRGHVDKILVVTKDVLSAGSTQWAQGGIAAALGPGDTPDQHEVDTLVAGAGACDLDAVRVLVNEGPEAVHELIALGTNFDHTADGELSLTREGGHHRDRIAHAGGDATGAEIQRALVAAIEAAPDIEVIQHALAVDLLLAADGGVAGVTLHVMGEGQRGGVGAVHCRAVVLCSGGFGQVFSQTTNPPVSTGDGMALALRAGATLRDLEFVQFHPTVMYLGPDSHGQQPLISEAVRGEGAFLVDDEGTRFMQGVHELADLAPRDVVAKAIMKRMLETDRPHMWLDARHLGAAFWERRFPTILATARSHGVDPVTQLIPVAPACHYVSGGVRTDLDGRSDVPGLYASGEAACSGVHGANRLASNSLLDGLVFSRRIATVLPDELRAWAEPVADERPAGLVAGAARRQLQETMSSRAGVLRSSDGLAEAAVVLDKLAGDAAEVVDQEAWETTNLVTIAAALTDAAALRQETRGSHWREDFPERDDASYAGHFDVRMLDGATVVEFTPSPQTDPSAGPVAGVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM87</accession>
    <name>A0A0Q8VM87_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02400</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892715.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56697">
        <property type="protein sequence ID" value="KRC56697"/>
        <property type="gene ID" value="ASE19_02400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1993776at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="42"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="132"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="146"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="19858" checksum="C976C96EE39BBE3B" modified="2016-01-20" version="1">MSSTAPQIRRLQTVAPRLAQAALERARLTVVPRTRRRRAPRVPFVTFVSIILLAGVVGLLLFNTSMQQASFRATALQKQATDLGAQQEALELDIANLRKPSRLHQEAQRLGMVIPSTATAVIDLRTGRILGDPTPASAGDRIPLHMPGPKKPRELDPKTKYVQADAPAKTDGASGTSGASARNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMP3</accession>
    <name>A0A0Q8VMP3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">RNA polymerase subunit sigma</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_03455</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892891.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56873">
        <property type="protein sequence ID" value="KRC56873"/>
        <property type="gene ID" value="ASE19_03455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1857862at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014322">
        <property type="entry name" value="RNA_pol_sigma-B/F/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007624">
        <property type="entry name" value="RNA_pol_sigma70_r3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04539">
        <property type="entry name" value="Sigma70_r3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02980">
        <property type="entry name" value="SigBFG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00715">
        <property type="entry name" value="SIGMA70_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="RNA_pol_sigma70" evidence="5">
        <location>
            <begin position="70"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS00715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="269" mass="30491" checksum="969F9239D91A06EE" modified="2016-01-20" version="1">MTIDRSRDDRRSVSIEQTRRRSAELFVVFRDELASQAERDTARDSLVHLHLPLVEHCARRFRNRGEPYEDLVQVGTIGLIKSVDRFDTERGVEFSTYATPTIIGEIKRYFRDKGWAIRVPRRLQELRMQISATTAELTQSLGRSPTARELAEAIGCSVEEIVEGLESSNAYSTLSLDATDDDSDGGAGQSMLDAMGVDDEALEHVEIRESVKPLLENLPPREKKILLLRFFKNMTQSQIAEEIGVSQMHVSRLLSRTLEQLRQSLESEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMY7</accession>
    <name>A0A0Q8VMY7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22670</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58872">
        <property type="protein sequence ID" value="KRC58872"/>
        <property type="gene ID" value="ASE19_22670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1543355at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="993" mass="104477" checksum="2A5987D78220F839" modified="2016-01-20" version="1">MCSASVVLAHPPGPGERLRDLVTHAVVGLDLVATAPDATIERTRASVLLPSGPARGEGSGPFGQVSLSFTVEGAAAGGLLQSLVERSGGPMVRAEAMTGAGPGVTRRVRLHLGRLWDVLDAHIGAARTLRVADLARHLGELVAGGALELVELPGTLAGCEAVADIVVRRAVGVLAAVDAEPGRHRLADRRPGDMEVTAMVTLPGAPGEVLTVERPIGELLADAQVAPSSYLSLVTADGGKVNGLLPNRALPRARAGGRDRLVMLQSVDRVQPVVLAAGGELRPSVSPAAVRLDTQLAVADAVTLAIFPTDPPQSPGPVVETGGPAFWPDRFDASTHWYVPELTLVLPDPAQPAEGGPFLFDVTPSGHGLDGSEGLEATIRLTLASRMPDDVRAAWEAAGSPTVRPVSSEDLGVQLGVPFRDEDGRLQVQHHPAESITPSADFGADGGTLVAVFRLSDQWARMAYGALSTPGFQAEPARILVTTSYGGWRRETGSFPIAQPDKIAVVLKPPVERLAVLRPPVIRAVRPPRTVVPVEPEPFPPRWDVGIAVNQVKTLAKAGLTVEPRLHMNAALLAELYQERYEWAHFQAASSVPVLVPCGDHGAAYRRIVPGEDPEAIGCQDVLKLGQAPFRTYEPIEVAAAEGHATVLRSLTRPGHFLLVPDRYLVGRFAPDAGDRAFHPQLLLTSVLDTETAALRAVLAATVEADVAPGVRRAIVEELRSRSPQVTLDLPWAAGVAQVVNLAVPGHGDVQCVPTATGFTIVLTLDVSDFLVVRTMLETTGLSGSATLTLPDGQVVASAVRLGLSQVTGPYDGGPVTLRRDGARVELTNRIGSRVAATRLRAPGGAEVPVDAVLAPGESRTVAAARPEDGEYDVVTVVESSRETLEEVRVYIEDLEVEVVLVLTGSLSQDTALEIATTFLGRPDAAPLVLTATTRQGARRYQLPLTAYVADPALTYVCTLVAADGTRTSSDPVTWSLRRQGAVIPVAAPTTHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN60</accession>
    <name>A0A0Q8VN60_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">RNA polymerase subunit sigma</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_22700</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892607.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58876">
        <property type="protein sequence ID" value="KRC58876"/>
        <property type="gene ID" value="ASE19_22700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1565734at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009042">
        <property type="entry name" value="RNA_pol_sigma70_r1_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007624">
        <property type="entry name" value="RNA_pol_sigma70_r3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00140">
        <property type="entry name" value="Sigma70_r1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04539">
        <property type="entry name" value="Sigma70_r3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r1_2" evidence="5">
        <location>
            <begin position="20"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r2" evidence="7">
        <location>
            <begin position="92"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r3" evidence="6">
        <location>
            <begin position="171"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4" evidence="8">
        <location>
            <begin position="262"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC58876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="325" mass="36009" checksum="5F7A87C97882CBB5" modified="2016-01-20" version="1">MATATANRTRNTGREIEGRDSVGLYLDEIARTPLLDAAREVELAKTIEAGLYAENLLAEGRIGRRKGGAPKQATQDELEWIAEEGRKATQEFINANLRLVVSIARKYGRAQMPMLDLIQEGNTGLIRAVEKFDYAKGYKFSTYATWWVRQAITRGIAQQARVVRLPVHVVEELNQVGGARRTLERQLGRDPEPEEIAAELGIEVDRVLDLMAWGREHVSLDTPVDEDGDTSLGDLMAQETAPGPDLTVLDVEARDRLNSLVDQLDARAADIIRSRYGLTDGRQHKLADIGVKHGISAERVRQLEREALQKLRRLGDPDLASGSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP90</accession>
    <name>A0A0Q8VP90_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Enoyl-CoA hydratase 2</fullName>
            <ecNumber evidence="1">4.2.1.119</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Enoyl-CoA hydratase 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_22910</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a (3R)-3-hydroxyacyl-CoA = a (2E)-enoyl-CoA + H2O</text>
            <dbReference type="Rhea" id="RHEA:26526"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57319"/>
            <dbReference type="ChEBI" id="CHEBI:58856"/>
            <dbReference type="EC" id="4.2.1.119"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.119" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58991">
        <property type="protein sequence ID" value="KRC58991"/>
        <property type="gene ID" value="ASE19_22910"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002539">
        <property type="entry name" value="MaoC-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01575">
        <property type="entry name" value="MaoC_dehydratas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC-like" evidence="5">
        <location>
            <begin position="178"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00029334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00030115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC58991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="276" mass="29801" checksum="B904A9A892639EC9" modified="2016-01-20" version="1">MLKAALPAVPGVNQLPGIKKTGGALPDLVLERNDVLVERTAVERYAAVCGFPNRDVAPVPYLHMLAFPLHMQLMTDAKFPFPAIGSVHLENTITQHRPVAIGETVSLKLVADNLRDSTKGRAWDMNVTGTVGDEVVWESVSTYLRVGKGDKENGDPGMSLNAITAKGPVWRIPENIGRTYGAVSGDRNPIHLYPLTAKALGFPRHIAHGMWSKARCIAALENRLPDAVTVEVAFKKPIFLPGKAQFGAEQTATGYDFTLVNPKTGAPHLLGRTTAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQA7</accession>
    <name>A0A0Q8VQA7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">50S ribosomal protein L25</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">General stress protein CTC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rplY</name>
        <name evidence="6" type="synonym">ctc</name>
        <name evidence="9" type="ORF">ASE19_00870</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896733.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59608">
        <property type="protein sequence ID" value="KRC59608"/>
        <property type="gene ID" value="ASE19_00870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1673077at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008097">
        <property type="term" value="F:5S rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00495">
        <property type="entry name" value="Ribosomal_L25_TL5_CTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.120.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.240.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01334">
        <property type="entry name" value="Ribosomal_L25_CTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020056">
        <property type="entry name" value="Rbsml_L25/Gln-tRNA_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029751">
        <property type="entry name" value="Ribosomal_L25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011035">
        <property type="entry name" value="Ribosomal_L25/Gln-tRNA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020057">
        <property type="entry name" value="Ribosomal_L25_b-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037121">
        <property type="entry name" value="Ribosomal_L25_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001021">
        <property type="entry name" value="Ribosomal_L25_long"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01386">
        <property type="entry name" value="Ribosomal_L25p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14693">
        <property type="entry name" value="Ribosomal_TL5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50715">
        <property type="entry name" value="SSF50715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00731">
        <property type="entry name" value="bL25_bact_ctc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_TL5_C" evidence="8">
        <location>
            <begin position="100"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="178"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF14693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="210" mass="21938" checksum="4126D84EC5DAF893" modified="2016-01-20" version="1">MSTEKITAELRTEFGKGAARRTRREGKIPAVIYGHGNDPIHVSLPGHDTMMAIKHGGANALLELDIDGTSQLALTKAVQVDAVRRVLEHVDFVAVVRGEKVTVDVPVVIVGEAANGTLVVTENTTVQVEAEATHIPEQFEVNLDGAEAGTQFLAGQLELPSGTTLLTDPETLVVNVTEQQAEEPAAESAEGDAEAPAADAGEAAEGGDSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQI7</accession>
    <name>A0A0Q8VQI7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">Flagellar hook-associated protein 1</fullName>
            <shortName evidence="7">HAP1</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">flgK</name>
        <name evidence="10" type="ORF">ASE19_01330</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Bacterial flagellum</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2 7">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896647.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59694">
        <property type="protein sequence ID" value="KRC59694"/>
        <property type="gene ID" value="ASE19_01330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1815809at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009424">
        <property type="term" value="C:bacterial-type flagellum hook"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001444">
        <property type="entry name" value="Flag_bb_rod_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010930">
        <property type="entry name" value="Flg_bb/hook_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002371">
        <property type="entry name" value="FlgK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30033">
        <property type="entry name" value="PTHR30033"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00460">
        <property type="entry name" value="Flg_bb_rod"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06429">
        <property type="entry name" value="Flg_bbr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01005">
        <property type="entry name" value="FLGHOOKAP1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02492">
        <property type="entry name" value="flgK_ends"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Flg_bb_rod" evidence="8">
        <location>
            <begin position="11"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="Flg_bbr_C" evidence="9">
        <location>
            <begin position="410"/>
            <end position="460"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00016244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF06429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC59694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="467" mass="48237" checksum="111AA2AE6F0F9302" modified="2016-01-20" version="1">MSGSFGGITSASAALRFQQVALDVAGSNISNASTDGYVRRRVIGETISSNVPAMWSRSDNFGGTVGVGEVRRMVDPLLDTRVRREHGTLSYLQTTQTILSRVEEGIGEPGDNGVYAAILDFRNAWQDLSTNPGGDAARQQVLGSAETLAQAMRLQVGNVTGEEADQRVHLNNVVSEVNTAAAGIAELNHNILVTEQNGTDAGTLRDQRDQLALRLAELTGAVTTVRADGQFDVTVGGETLVTGREAGAFVVASGVTPAGAADGSPITFRIDASWGSTVLPTGTAGAGGELGAVTDILTTVLPSYRVGLDAIAGDLAAAMNTQHALGYDAAGAPGGTFFSYDPLVGAASLQVAITDPALVAASSVTGSGRDGVNADALSRAGDAADAYQRLVNGFGTQVASLQRQTANQTALAGSLDDAWEQQAGINLDEETVNMLTAQRSYEAAARLLTTLDEVLDTLINRTGLVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQP9</accession>
    <name>A0A0Q8VQP9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GIY-YIG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59627">
        <property type="protein sequence ID" value="KRC59627"/>
        <property type="gene ID" value="ASE19_00975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1284357at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000305">
        <property type="entry name" value="GIY-YIG_endonuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035901">
        <property type="entry name" value="GIY-YIG_endonuc_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82771">
        <property type="entry name" value="SSF82771"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50164">
        <property type="entry name" value="GIY_YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GIY-YIG" evidence="1">
        <location>
            <begin position="193"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="281" mass="30837" checksum="ED66A5BE52CAB2BE" modified="2016-01-20" version="1">MTGMSVAQDSAEQAVVITFNDLLLKGGVDPGEVKLLRHVVKGKQILEIWRSDRALFEEYQRRQGTVFFNGVSHAACFLVSRAGTEVFGGLYRVDGSTAAAPDDIDPLVGVPHGGSIYDLTREPAFAKYEDKLVVQWYLGGKHPGWWQWAKNNPKPIVEIATQQEQPFPGWLEFASPVDELDLLPRTWQEVLRSASGVYLLTDSAGKHYVGSAKGGDGFWGRWYAYRNGGTGGNVGLRGVAGPFTVAVLQTFDPGLSDQSVERVESLWKEKLGARLVGLNLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR65</accession>
    <name>A0A0Q8VR65_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03910</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892974.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56957">
        <property type="protein sequence ID" value="KRC56957"/>
        <property type="gene ID" value="ASE19_03910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2096944at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="70" mass="7788" checksum="CEA67A432CDB9DED" modified="2016-01-20" version="1">MYIGLGIVLLVLGLVFALDVITVDIKYVNDDALGTILIVAGVLAIVLSLLIAPPWRRDRVVREYDERPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRC2</accession>
    <name>A0A0Q8VRC2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Hemerythrin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893026.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57009">
        <property type="protein sequence ID" value="KRC57009"/>
        <property type="gene ID" value="ASE19_04200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012312">
        <property type="entry name" value="Hemerythrin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01814">
        <property type="entry name" value="Hemerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hemerythrin" evidence="1">
        <location>
            <begin position="26"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="237" mass="26104" checksum="8694020E9D129BCC" modified="2016-01-20" version="1">MTQTTMPPLMLPGQAAAPAGPADMTMMYVLHHAFRRDLADFVAAAQRTPAADRAAWQRLGARWTVFGELLHDHHTKEDDYVWPLLVGKVSAAGDAEALQVLEDMEEEHASIDPLMEACSDGFDRLSEAADEDARASLVVRLVRTQENLDGHLAHEEKDAIQILQKYVNGNEWAELEKTKLRGGMSLAQVKTMVPWVYKGLAPQAAAQVDRVAGPPFRVIHALGRRKFARGERAAFGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRE7</accession>
    <name>A0A0Q8VRE7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_01740</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896573.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59766">
        <property type="protein sequence ID" value="KRC59766"/>
        <property type="gene ID" value="ASE19_01740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="7"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="125"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="233"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="388" mass="41732" checksum="FE20E8F7FFA4BB65" modified="2016-01-20" version="1">MNARGFTEEQEEFAAAVRQFAAKECGSREQRAALTDDNREQHADAVYAKLAASGYLGVSIPEEYGGSGGGIIEQVVLFEELWRGMVPVHGAGTSHTVAGVYKRYASEQQKKDVLGAICAGEVMSISISEPGAGSDAAAVSCKAVRDGDVYRITGQKTWCSDAQFASKILLVARTGRGDRPHDGLTMFEVPTSTPGLEIRPIRTMGGGAEVNDLFFTDLEVPASAVVGEEGGAWKQVMSGLNGERIVCAAQGLGMAQRSFDDLLAYLRQREQFGAPIGSFQAVRHRIADLAIEIEASRALTYDTARRVAAAEGAPEELIRATSMAKVKVTETAKRVALEGIQLMGGYGYTLEFDMERHLRLAIPATIYAGTNEIQRDIISSTYGLRPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTR8</accession>
    <name>A0A0Q8VTR8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Prenyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23130</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892533.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58953">
        <property type="protein sequence ID" value="KRC58953"/>
        <property type="gene ID" value="ASE19_23130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="780613at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="377" mass="41550" checksum="EC23DCF7D974628F" modified="2016-01-20" version="1">MTRGAVPEVPLSRLPYVEGVLSAQQVADTAAAIAAMQEPWGAVPWTTGEHVDIWNHVEAAMAMLVGGQVEAAERAYAWVPTMQRADGSWPMKIVGGVADDERGEVNMSAYFAVGVWHHWLVRRDIRFVERYWPSVRAGLDFVVSLQEPFGGIRWTPVDDFCLLTGNSSIYHSLRAGVALADLMDDPQPEWELAGGRLGHAVRSHADLFEDKSTYSMDWYYPVLGGPVRGDAARSLLSKRWDQFVVPGLGIHCVDTNPWVTGAETCELAMALDVLGDQRSALTLLTDMQHLREDDGRYWTGWVYDDPSRPAPADEPRNVHWPHEHTTYTAAAVLLAVDALGETYGHATPGSGIMRGTSLAPHFDEIALECDCTSTPVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW82</accession>
    <name>A0A0Q8VW82_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Rho termination factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01225</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896887.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59817">
        <property type="protein sequence ID" value="KRC59817"/>
        <property type="gene ID" value="ASE19_01225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1882650at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011112">
        <property type="entry name" value="Rho_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036269">
        <property type="entry name" value="Rho_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07498">
        <property type="entry name" value="Rho_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF68912">
        <property type="entry name" value="SSF68912"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rho_N" evidence="2">
        <location>
            <begin position="54"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="89" mass="9739" checksum="78D3E1A446470865" modified="2016-01-20" version="1">MPGKQHGPGIKNPDLYEELRDDGASKEKAARISNAAKAEGASEIGRRGGKAGDYEDWTVDELHKRAAELDIEGRSSMDKAELIDALRHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VY24</accession>
    <name>A0A0Q8VY24_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Amino acid adenylation protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_00415</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917911.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59537">
        <property type="protein sequence ID" value="KRC59537"/>
        <property type="gene ID" value="ASE19_00415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="572620at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031177">
        <property type="term" value="F:phosphopantetheine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044550">
        <property type="term" value="P:secondary metabolite biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012728">
        <property type="entry name" value="NRPS_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020806">
        <property type="entry name" value="PKS_PP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00823">
        <property type="entry name" value="PKS_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02353">
        <property type="entry name" value="NRPS_term_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="1 3" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="629"/>
            <end position="649"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="836"/>
            <end position="860"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="880"/>
            <end position="903"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="1081"/>
            <end position="1105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="1111"/>
            <end position="1139"/>
        </location>
    </feature>
    <feature type="domain" description="Carrier" evidence="6">
        <location>
            <begin position="501"/>
            <end position="575"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1041"/>
            <end position="1060"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="3">
        <location>
            <position position="536"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1294" mass="135896" checksum="BF4D2F8D50EDF083" modified="2016-01-20" version="1">MFTCVDKDGEVILAPSPLLRGAEAPAARTLVDVFRRTAAEHPEAMALDSGNDTVTYEEFAESAEAVAADLADLGIGPGDKVGVRLPSGTTDLYVAIMGILFVGAAYVPVDADDPEERARLVFGEAQVAAVIGAGLAIEARRTAEPRQRQDPSVDDDAWVIFTSGSTGTPKGVAVSHRNAAAFVDAESLMFLQDAPIGPSDRVMAGLSVAFDASCEEMWLAWRYGACLVPAPRALVRSGVDVGPWLTANDITIVSTVPTLVSLWPDDALERVRMVILGGEALPPELAARLVRDDREVWNTYGPTEATVVACGAGPVRIGLPLAGWDLVVVDPATGEPVAEGERGELIIGGVGLARYLDPAKDAEKYAPMPALGWDRAYRSGDIVVNAAAGLLFAGRADDQVKLGGRRIELGEIDSALLALPGVTGAAAAVRRTTTGNQLLVGYVATTPEYDGAAATAHLRATMPAALVPRLAVVDDIPTRTSGKVDRDALPWPLATADPADAGLHGTAAVIADVWQKVIGAVPDGPEVDFFDLGGGSLTAAQVVTLLRAEHAELTVADLYEHPTVSALAGFLDSLEPSALAEQSRKVLPIPRKTQVGQVVAVPLLRALAAPRWLAGTLTFARVVHDLLDVAWLPAVSWWLLVPLLLLFVSPPGRMLLAAKLVQLVRAGVRPGQYPRGGKVHLRIWMAERIADELGATRLAGAPYMTWYARLLGAKVAKGSDLHSLPPVTGLLTVGKGASVEPEVDLTGYWIDGDTLHVGAIRIGQRARVGTRSMLGPDAAVGDDAEVAPGSAVFGEVPAGEFWSGAPATRASSAARGPWAERPAATKRTLRRWAVSYAAAAAALALLPALAIGAALVPALLLADLGATSGPGDAVRALLPWVVPGVLVGVVVLALLILVAVRLLGRGVKAGAHPLQSAPALCIWSTIRVLDEARTWLFPLYSSQLTPVWLRLLGARIGQDVEASTVLMIPSLTTVSDQAFLADDTLIGGYELGGGWLRAERVKVGKRAFVGNSAMAAPGRKVPKRSLVAVLSAAPARGTVKAGESWLGSPPAPLRRSEQGSADVRTYAPPRRLKVARACWEIARLVPLTLAVCLHLGVVAGTLAVWSEHGVVAGLVAVPVLLWVAGLVAAVVAVAAKWLLVGKVRAGSHPLWSSFVWRNELADTFIEVMATPWFAGLATGSPLITTWFKLMGARVGRGVWCESYWLPEADLVELGDGATVNQGSVVQTHLFHDRLLATDAVRLRRGATLGPNSVVLPAATLGKHATVGPVSLVMRGETVPDKTRWIGNPIGPWAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYL3</accession>
    <name>A0A0Q8VYL3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01620</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896594.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59745">
        <property type="protein sequence ID" value="KRC59745"/>
        <property type="gene ID" value="ASE19_01620"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="12"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="203" mass="22124" checksum="33622C8236A45AAF" modified="2016-01-20" version="1">MAEIRRRPHRRGEARAAVLAHARTVFSERGYHDASLAEVAVRAEVSETLVYRYFGSKAGLFEQSIIGPAREFVDGFLGEWEEQDDPPGLEEKVRVFVVQLLAFVREHQGLLVAWALAQRDGGPREIATDGTHGQAVRRFAAALGGEGGDDAEMAVSLSMGLILSVATFADLMFAADSPNRDPDRLTDAVTKFVLAGFLAQLDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZ08</accession>
    <name>A0A0Q8VZ08_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">MarR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00720</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59586">
        <property type="protein sequence ID" value="KRC59586"/>
        <property type="gene ID" value="ASE19_00720"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023187">
        <property type="entry name" value="Tscrpt_reg_MarR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01117">
        <property type="entry name" value="HTH_MARR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="2">
        <location>
            <begin position="25"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="17852" checksum="7E1EA9DC1FC1EE45" modified="2016-01-20" version="1">MPTREQHVRHPSRGEAAPRSTAAVATELRFSVMRLRRRLVRERHPDNDLSLSAMAVLWALHRHGDLSVGALASREQVRPPSMTRTVNCLADDGLVTREAHPTDGRQVVVRLTEEGSAVVHADAARRDRWLSRRLEELTPAERDVLRRAAPILQRIAAAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZI8</accession>
    <name>A0A0Q8VZI8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22665</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58871">
        <property type="protein sequence ID" value="KRC58871"/>
        <property type="gene ID" value="ASE19_22665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="685625at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="140"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="688"/>
            <end position="737"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="737" mass="79754" checksum="80AAEB08C78E1231" modified="2016-01-20" version="1">MGPTYAGGTQPIVKDGYAVLYLPDVMNRELIAQGEAPVFYYIPNQVRMARKEGPDKGDYLFNLVRFAGTGGEGVVGGGGDVAGGVLTFSTTGALPESTRQQAEAQITAQFADSDDAFWGIRGARKPPMFRPAIIASSTTAVSNVSPTPRGFPAMRPASRGKGSRTAYFGLPGARSGARSPRVVRDGEPPAPGAAAPAVPAAGSSNLDPWYWDMQGQGTGSIDPTGTHAFSGLVGVYPAAILWEAFHGTASPLIVIQNYKLKVWSPVVKITIDGHWDRIFEHFSAAASGRYLWAKVDLQAEFNNMRTNGTITTDVKVDTTLPGADAIAQRLQQKSDLVFNKFMEQAQKMIFDPPAPQVEAAKADTGGWGLWGVGVALKYRRDETHLDLHYEETQQFAYLQDHTVSSSLAGMYDEIKADPEAERKYFLNVDLDDWPRKLNRVVRPVAAWEDGDVEFMSVEIGYPGDDGAINWQGHAFSGDEGNDGTYKWARVQKPAGSVTSPPENWEPDKTFIKRKVHLAEPRSEVVDPYRRTQIQQNVIDIDPGPNGTPLKETILEVRADSAGKLAVGPVQLGVVLTDNTQVVEAVFEATKEDGTPLGIPPVRFRWNEGDYDKDRIWTVFTGDPTFKPYYRYKVSVTVKGTLFEPGRAWEGPWTPTQGNGPLVISVPRPDGEGVVTKSRAIPEPRIAKLRALPPSGSAPASPSKPAEAAPAAANGASADGSKDGPPAKQPTTFLSYQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W1A5</accession>
    <name>A0A0Q8W1A5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00265</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59511">
        <property type="protein sequence ID" value="KRC59511"/>
        <property type="gene ID" value="ASE19_00265"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT" evidence="2">
        <location>
            <begin position="1"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="130"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="283" mass="29226" checksum="1EDC0440E4E6B899" modified="2016-01-20" version="1">MRAGLPDRPGALAELAAACGRAGVNIQTVQVFPDGTTVTDELVLQVPQDWARDQLLQLVAGAGGQAVTAVPVTTAALEDQPTRYVQAVRAIIAQPATFPDVAAHLFDADVAPSTGSEDVLEMVVGGSATIQIRRDTPFTATERARAASLAELVGEVLDAQAPPAPYQPGAGSPEYVTSGAVVSALAGGKVAGRAEFTRADDDAPWPVDLWVDPAWHRRGVGTQLLAAVARAARGAGAEEIVLTAPSDTKAVLPMVLAAGMRGRIRMAGDTLTVRIAITELRGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W1W2</accession>
    <name>A0A0Q8W1W2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01380</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896638.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59703">
        <property type="protein sequence ID" value="KRC59703"/>
        <property type="gene ID" value="ASE19_01380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1630092at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="2"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="131" mass="14520" checksum="87D94516226FADF6" modified="2016-01-20" version="1">MRAMIIDDSRAMRSILRRIVSGLDFETTEAENGQVALDQMHAGVVPDVCLVDWNMPVMDGYTFITEVRANPEWRDVTLMMVTTESEQRNIVRALAAGAHEYVIKPFTPDAIVEKLSLLGLVPADSAQGAWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM91</accession>
    <name>A0A0Q8UM91_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glycogen phosphorylase</fullName>
            <ecNumber evidence="4">2.4.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_19800</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[(1-&gt;4)-alpha-D-glucosyl](n) + phosphate = [(1-&gt;4)-alpha-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:41732"/>
            <dbReference type="Rhea" id="RHEA-COMP:9584"/>
            <dbReference type="Rhea" id="RHEA-COMP:9586"/>
            <dbReference type="ChEBI" id="CHEBI:15444"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="EC" id="2.4.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the glycogen phosphorylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.1" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895894.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46118">
        <property type="protein sequence ID" value="KRC46118"/>
        <property type="gene ID" value="ASE19_19800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="137158at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008184">
        <property type="term" value="F:glycogen phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102250">
        <property type="term" value="F:linear malto-oligosaccharide phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102499">
        <property type="term" value="F:SHG alpha-glucan phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011834">
        <property type="entry name" value="Agluc_phsphrylas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000811">
        <property type="entry name" value="Glyco_trans_35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024517">
        <property type="entry name" value="Glycogen_phosphorylase_DUF3417"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035090">
        <property type="entry name" value="Pyridoxal_P_attach_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11897">
        <property type="entry name" value="DUF3417"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00343">
        <property type="entry name" value="Phosphorylase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000460">
        <property type="entry name" value="Pprylas_GlgP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02094">
        <property type="entry name" value="more_P_ylases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00102">
        <property type="entry name" value="PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="5" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7 10" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DUF3417" evidence="11">
        <location>
            <begin position="13"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="10">
        <location>
            <position position="616"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000460-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF11897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC46118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="861" mass="94443" checksum="F9B9D1E040E35AF4" modified="2016-01-20" version="1">MRAIRRFTVRPVLPDALASLGELAANLRWSWHPPTQALFEEIDADRWHEVGHDPLRLLGEVPGERWAELAADEGYVARVADVRADLASYLTGERWYQRASAAAPDETWPASIAYFSPEFGITAVLPQYSGGLGILAGDHLKAASDLGAPIVGVGLLYRHGYFKQALSREAWQVESYPVLDPDGLPISLLHEHDGNRATISIRMPGGPDLLARIWVASVGRVPLLLLDTDFEENPEQYRLITDRLYGGNTEHRLRQELLLGVGGVRALRAYSRITGAPAPEVFHTNEGHAGFLGVERIRELTADSDLDFATALEIGRTSTVFTTHTPVPAGIDRFPRTLVEQYLGEQGSTPGVPVELVLGLGSEDYEGGDPGVFNMAVMGFRLAQRANGVSQLHGHVSRGMFNGLWPAFDEAEVPITSITNGVHAPTWVAPEVVALASAQGADWEGDDTEAFWAAFEKVAGTDVWSTKRALRERLVADARRRLRKSWEKRGAAPAELGWIDDALDPDVLTIGFARRVPSYKRLTLMLRDPERLKALLLHPERPVQLVVAGKAHPADDGGKRLIQELVRFADAEDVRHRIVFLPNYDIALAQPLYPGCDVWLNNPLRPYEACGTSGMKASLNGGLNLSILDGWWDEWYEPEFGWPIPSADGLEDYSDKRDDLEAAALYDLIENEVAPRFYDVDADGVPVRWVEMLRHTWAQLGPKVLATRMVRDYIAKLYAPAAAYSRLLASTPDGARDLASWKARVRGAWDGVRVEHVEAAGVGDTVEVGAGLAVHAYVALGELAPGDVEVQLVHGRVDAEDDLVDTAVAPLRLVESYDGGRHRFDGDLELGRPGPFGYTVRVVPKHPLMVAPAELGVVALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMS5</accession>
    <name>A0A0Q8UMS5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">N5-carboxyaminoimidazole ribonucleotide synthase</fullName>
            <shortName evidence="3 5">N5-CAIR synthase</shortName>
            <ecNumber evidence="3 5">6.3.4.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3 5">5-(carboxyamino)imidazole ribonucleotide synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3 5" type="primary">purK</name>
        <name evidence="7" type="ORF">ASE19_20900</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).</text>
    </comment>
    <comment type="function">
        <text evidence="5">Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)- to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 5">
            <text>5-amino-1-(5-phospho-beta-D-ribosyl)imidazole + ATP + hydrogencarbonate = 5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole + ADP + 2 H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19317"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58730"/>
            <dbReference type="ChEBI" id="CHEBI:137981"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.18"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 5">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate from 5-amino-1-(5-phospho-D-ribosyl)imidazole (N5-CAIR route): step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 5">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the PurK/PurT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.18" evidence="3 5"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46302">
        <property type="protein sequence ID" value="KRC46302"/>
        <property type="gene ID" value="ASE19_20900"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00942"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034028">
        <property type="term" value="F:5-(carboxyamino)imidazole ribonucleotide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004638">
        <property type="term" value="F:phosphoribosylaminoimidazole carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01928">
        <property type="entry name" value="PurK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003135">
        <property type="entry name" value="ATP-grasp_carboxylate-amine"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005875">
        <property type="entry name" value="PurK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040686">
        <property type="entry name" value="PurK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02222">
        <property type="entry name" value="ATP-grasp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17769">
        <property type="entry name" value="PurK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01161">
        <property type="entry name" value="purK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 4 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 3 5" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="6">
        <location>
            <begin position="100"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="96"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="169"/>
            <end position="172"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="259"/>
            <end position="260"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU361200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="381" mass="40741" checksum="7B5E9A089AA8CDD8" modified="2016-01-20" version="1">MIGGGQLARMMAQPAIALGVPLRLLAEAEGVSAAQVIPDQQVGDYRDLATLREVTAGCSVVTFDHEHVPTEHLRALAADGVVAHPGPEALVHAQDKVVMREAMTRLGAPQPRWAVVTSVAEVEEFGLPCVLKTSRGGYDGKGVWFARTTDDVTEALDVAERTGVRLLAEELVEFRRELSALVARSPSGQAAAYPVVATLQVDGICSEVVAPAPDLDPALATSAQELALRIAGELGVTGILAVELFETVDAAGKPGIAINELAMRPHNTGHWTQDGAVTSQFENHLRAALDLPLGSPEPRARWTVMVNILGGDDPAVGRLYDGYPHALARDPRLRVHLYGKDLRPGRKVGHVNTFGDDLEDCLERARHAAAWFRGDLGNESE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN08</accession>
    <name>A0A0Q8UN08_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21220</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LppX/LprAFG lipoprotein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896128.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46357">
        <property type="protein sequence ID" value="KRC46357"/>
        <property type="gene ID" value="ASE19_21220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029046">
        <property type="entry name" value="LolA/LolB/LppX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009830">
        <property type="entry name" value="LppX/LprAFG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07161">
        <property type="entry name" value="LppX_LprAFG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89392">
        <property type="entry name" value="SSF89392"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359223" evidence="3">
        <location>
            <begin position="26"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="25"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="25"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="29849" checksum="D6E20BFA2DBCD6CA" modified="2016-01-20" version="1">MKRSTARISVAAFLAAATLLTGCNSDDSGSGGSAGKQTSDATSAGTDAGTTDATGSSDDTGSTGEELDKASFYKAVIDAQVEAGSYRSRSSSTTAGMSAVMEGEATYRDGKLFGHVKSSADSPQQIEGVVAAGVLYLKGTSLGLPSGKWLKLDPNDPDNADSPLAALAAVADPEAALRAMGDLTALSKVGEESIEGVATTHYKATMSTKNYADVLGLPAEAAKLMPATMPFDMWIDEENRPVKMTLEFDIAGQKSSTEQTYFDYGADIDVTVPEDADTVTPKQAGLGGLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN16</accession>
    <name>A0A0Q8UN16_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidase_M23 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21430</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896165.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46395">
        <property type="protein sequence ID" value="KRC46395"/>
        <property type="gene ID" value="ASE19_21430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1891666at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011055">
        <property type="entry name" value="Dup_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016047">
        <property type="entry name" value="Peptidase_M23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01551">
        <property type="entry name" value="Peptidase_M23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51261">
        <property type="entry name" value="SSF51261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M23" evidence="2">
        <location>
            <begin position="330"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="105"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="198"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="432" mass="46459" checksum="F1B762983FDCA6CC" modified="2016-01-20" version="1">MRSFPSAPWLRRTLDRLPAWAHPQWLVTAVAVVVAIGGLAVPLAHADDRDDLKHKQDQVKGQISNVKGEIHEASAKVAKISGQLRTAQGRLTTARTRLAGVRSQLADARKVATQLAAKLATAEQRLTVAKAELAEAVRAAQEQHDVSRDTLIEIATGSDPQLSLLAAYTDGRDLEDVMVSRTAHDLVVGRQHNTLVALIAAEERMQQRKDEVKNARDEVASAKQEADAHVATVTTLVQRAAAAESKVATLVRSTASARAAVVRARAADRAALRRLEAREARIKRKILALSQSQGGSYNGDTGGLLAKPGPGPVTSPYGWRIHPIYGYWGLHNGIDFGTGCGARLVAGESGKVIDTYYDEIYGNRLYLAIGRVNGASIVLVYNHMTSYAVGEGAHVRRGQTVGYSGSTGWSTGCHLHFIVMRNGEAVDPAPYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN38</accession>
    <name>A0A0Q8UN38_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_20225</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895964.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46191">
        <property type="protein sequence ID" value="KRC46191"/>
        <property type="gene ID" value="ASE19_20225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="6"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="150"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="223" mass="24130" checksum="2D5B3E595D87E52A" modified="2016-01-20" version="1">MTAPIRVLLVDDQELFREGVRVIVDAQEGMEVVGTAADGVEAVRLVDELEPDVVLMDIRMPEMDGVEATRQVFLPERVARRGRAVRVIVLTTFNLDDRAATAIRHGASGFLLKGTTPVMLRDAIRTVHAGNAVLAPTDLSALLDTQFRAPATPPPSYQGLTDKERDVFAAVARGLSNQEIAGVVFLSESTVKTHVGAILRKLGLRDRVQIVVFAHEHGLAHGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNB3</accession>
    <name>A0A0Q8UNB3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896264.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46494">
        <property type="protein sequence ID" value="KRC46494"/>
        <property type="gene ID" value="ASE19_22010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1818027at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="339" mass="35069" checksum="A6C05EFFC0ED7C3F" modified="2016-01-20" version="1">MTDQLRSLLEQAVPDDAPTLDPVTVAAAARQNQRRLRAVAAAGVVAVIVAGGATAALTTRGGDELTADDPAPSPYDAPACPATLPELSDARTSVDSLEGLASVRMCPDLAPGPMGGVALPDSQRKALLAGMDALVDDVSDFSDRVEETDAFDPARCATIDVLNTRQSLQLTYADGHTELVPTAACSPITVAGHEIDGQFLGEAYLAALDHQRSSADYVFHGTVPLTCDLQTTPTPARPGRDVLVAAVSCGPKGSAVALDNGAVATLAEAWGDPQPEPPYDENCNLRTDLPYLVAATDRGDVVVIRQQQCDVLMPLLAWGAVGGEEGIALPTTLEALGLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8URQ9</accession>
    <name>A0A0Q8URQ9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21340</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896148.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46377">
        <property type="protein sequence ID" value="KRC46377"/>
        <property type="gene ID" value="ASE19_21340"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="3">
        <location>
            <begin position="50"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="347"/>
            <end position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="378" mass="41403" checksum="B41080A0559244A5" modified="2016-01-20" version="1">MTRTPHEQLESTARMWQRRIHTAQVLILVILVGGVLYVADTVVGGSLFRNPYHLTVELPQAAGLHEGSVVTYRGQRIGEVTEVRLSDDEGVGAVAVLEIDSDIDIPTDSAMEVRNLSAVGEQYLDVRPRTADGPFLADGATVPVSEATVPVSVPDVLAHAQGLMSHLDVTDIRTISDETAAIFDGGEDDVDLRALAIEMETAFAMLRRLEPDLTTLARRAEKPLASVDDLSPEIRRMAADLEEIAQSLAAAAPDIRRTVVTSLDLLPRLERWWQQASPELRRMLRSGVPLTEMAARHLRGLQHWLDWAPAQADVMAGSTRGGSGRVVLVPRILKNCVYDRSIQRDAQDISRREPRTDARCTDPPDGTQGRGSANVPQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU81</accession>
    <name>A0A0Q8UU81_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Betaine-aldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_17580</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893146.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48742">
        <property type="protein sequence ID" value="KRC48742"/>
        <property type="gene ID" value="ASE19_17580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="744602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="4">
        <location>
            <begin position="31"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="497" mass="52094" checksum="888CA48DBE4F74C2" modified="2016-01-20" version="1">MTISLEIPDAVSAFLKSPVSHLIGGADVTSASGETFTTLNPCDGSLLAEVASGGPREVDLAVAAARRAFDGPWKRMPAGQRSKVLWRLADLIEERAEEFATLEALDTGKPLTLARAVDIPLVVEWFRYMAGWPTKLTGSTIPVTAPAGPGNYFAYTLREPVGVVGAIIAWNFPLLLVSWKLAPALAAGNTVVLKPAEQTPLTAALFAEVVREAGIPDGVVNIVHGGGEETGAALVNHPGVDKVSFTGSTEVGKKIIQGAAGNLKKVTLELGGKSPNIIFGDADLETAIPGAGMAIFLNQGEACEAGSRLFVHDSVYDDVVAGVADIARGFKLGNSLDPETTMGPVVSQTQLDTVLGYLDAGRAEGARAVAGGNRHGTEGFFIEPTVLVDAEPGMRVVDEEIFGPVLTVQRFTDTAQVVQAANATAYGLAGGIWTRDLALAHNVASELRAGSVWINTYHVLDPALPFGGYKQSGWGREHGAEVFDAYTETKTVVVNKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUJ1</accession>
    <name>A0A0Q8UUJ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893244.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48843">
        <property type="protein sequence ID" value="KRC48843"/>
        <property type="gene ID" value="ASE19_18155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1833659at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="88"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="110" mass="11668" checksum="D69DF4E52F536E44" modified="2016-01-20" version="1">MVLTGVTGVGWRDGELDRRAVTRCALARVCGVCGTPLGRPIAFVGDFDEDARNSFHAPPLHLACARGVIAEAGPGHVLVCTGGFEFVRPGRDDADPLPRFEPNSRLGETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUY0</accession>
    <name>A0A0Q8UUY0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_18485</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893301.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48900">
        <property type="protein sequence ID" value="KRC48900"/>
        <property type="gene ID" value="ASE19_18485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1254678at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="25"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="58"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="91"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="131"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="174"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="228"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="259"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="282"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="310"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC48900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="333" mass="34071" checksum="B3472CDF028CE6E1" modified="2016-01-20" version="1">MSATTTVTSDVPDNDSPGFDYFDWFGRYGALVVLALLVTVASAAAPETFPTLDNAINVLNQSALAAIIAMGLTFVLVTGEFDLGIGNAASLAGVAACALMVDAGFGIVAALLSVLVLGAAIGIVNGFIVTFMNVSALVATLGTGTVVIGVNYVISDGTPVALQDPDTFLDITFGRLFGVPYPVYVMVLVAAVLWWLLNRTVLGQAMQAVGGNRVAAELSGIRVDRVRIIAFAVCSMCAGLTGFLLASRTGSATLAAGDPYLLSSFAAAFFGSAVLRDGQFHIVGTLVGVITVSVGFNAIALIGLATYSQYLFQGILLIVGVGVGSLARLRAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV26</accession>
    <name>A0A0Q8UV26_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">Pyruvate dehydrogenase E1 component</fullName>
            <ecNumber evidence="2 8">1.2.4.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_17325</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 8">
            <text>(R)-N(6)-lipoyl-L-lysyl-[dihydrolipoyllysine-residue acetyltransferase] + H(+) + pyruvate = (R)-N(6)-(S(8)-acetyldihydrolipoyl)-L-lysyl-[dihydrolipoyllysine-residue acetyltransferase] + CO2</text>
            <dbReference type="Rhea" id="RHEA:19189"/>
            <dbReference type="Rhea" id="RHEA-COMP:10480"/>
            <dbReference type="Rhea" id="RHEA-COMP:10481"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:83099"/>
            <dbReference type="ChEBI" id="CHEBI:83111"/>
            <dbReference type="EC" id="1.2.4.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.4.1" evidence="2 8"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49084">
        <property type="protein sequence ID" value="KRC49084"/>
        <property type="gene ID" value="ASE19_17325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004739">
        <property type="term" value="F:pyruvate dehydrogenase (acetyl-transferring) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02017">
        <property type="entry name" value="TPP_E1_EcPDC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035807">
        <property type="entry name" value="PDC_E1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004660">
        <property type="entry name" value="PDH_E1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041621">
        <property type="entry name" value="PDH_E1_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43825:SF3">
        <property type="entry name" value="PTHR43825:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17831">
        <property type="entry name" value="PDH_E1_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00456">
        <property type="entry name" value="Transketolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000156">
        <property type="entry name" value="Pyruvate_dh_E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00759">
        <property type="entry name" value="aceE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="TRANSKETOLASE_1" evidence="10">
        <location>
            <begin position="143"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="domain" description="PDH_E1_M" evidence="11">
        <location>
            <begin position="489"/>
            <end position="716"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="266"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="268"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00033635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR000156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000156-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC49084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="913" mass="100879" checksum="DF25E38C669AEA34" modified="2016-01-20" version="1">MHEGLPTQLPDIDPEETQDWIDSFTALVDERGRERARYVMLRLLESARQKQVGVPALRSTDYINTIPPEREPWFPGDEDVERRIRAFIRWNAAVTVSSANRKGLEVGGHIATYQSSASLYEVGFNHFFRGKDHPGGGDQLFIQGHASPGIYARAFLEGRLTEEQLFRFRQEVQHGRGAGLPSYPHPRLMPDFWEFPTVSMGLTGINSIYQARFNRYLQNRGVKDTSQQHVWAFLGDGEMAEPESLGAIRIAAREELDNLTWVINCNLQQLDGPVTGNGKIIQELEANFRGAGWNVIKVVWGREWDALLAKDVDGVLVNQMNSTPDGAFQTFSVESGAYNREHFFGPDPRLRAMVEHMTDRQIEKLPRGGHDYRKVYAAFDAATKHVGQPTVILAHTVKGWTIDALEGKNATHQMKKLTKDDLKKFRDRLYLPISDRDLETAYEATGTAPFFHPGADSPEIEYMMERRRQLGGSLPQRVDRSTMLTLPGDATYAELKKGGGSHKVATTMAAVRLLRDWMKDPGIGARIVPIAPDEYRTFGMDSMFPSAKVYDPAGQTYESVDRNMLLQYKMSPQGQMLHEGISEAGAMASAIAAGSSYTTHGEPMIPFYIFYSMFGFQRTGDSIWAMADQLARGFLVGATAGRTTLTGEGLQHADGHSPLIAATNPAVVHYDPAFGYEVGHIMRSGLERMYGASETHPRGEDVIFYITVYNEPVDQPAEPEGLDVAGLLKGMHRVTAPGSHAEGPRVRLLASGVAFPWITEAARILAEDWGVQAETWSVTSWNELARDGIAAGKWNLLHPDEAHHTPYVTEALGDSPAPVVAVSDYMTAVPLQIAPWVPADYHVLGADGFGFADTRPAARRYFQVDAPSVVVQALAALADAGEIDPGRVKDALEKYRIDDPTAVAGVLQEGGDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV81</accession>
    <name>A0A0Q8UV81_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GSDH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17715</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49096">
        <property type="protein sequence ID" value="KRC49096"/>
        <property type="gene ID" value="ASE19_17715"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012938">
        <property type="entry name" value="Glc/Sorbosone_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011041">
        <property type="entry name" value="Quinoprot_gluc/sorb_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07995">
        <property type="entry name" value="GSDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50952">
        <property type="entry name" value="SSF50952"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GSDH" evidence="1">
        <location>
            <begin position="33"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="373" mass="40211" checksum="F7D635EE64D896D1" modified="2016-01-20" version="1">MLGAACAGSAEPGPADAQRVVPALDVDVVATGLDHPWEVQPLPSGQLLVTQRERRTLTLVNPTSGSKRNIAFPSSQVWAQGETGLLGLAVDPEFAANRRIYTCSGWRTTSGHDIRVIAWTLDTGLTRATFRHTLKAGLPSNSIGRHGGCRLLITRNGALLVGTGDAAHGTNPQNLRSLGGKVLRMGRFTGRPSAGNPWPRSPYPNRRYVLSYGHRNVQGLAQRADGTVWSVEHGSYRDDEINLIGAGRNYGWNPVPGYNESVPMTDPRLPGTQFAARWRSGDPTIATSGADFVKGSGWGDLAGTLAVAVLKDQRLMFVRFDSSGRLRWTRVPAELRGTHGRLRDVTALNDGSLLVTTDKGDGNDEILRVRPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVW2</accession>
    <name>A0A0Q8UVW2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19840</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895901.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46125">
        <property type="protein sequence ID" value="KRC46125"/>
        <property type="gene ID" value="ASE19_19840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1850406at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021354">
        <property type="entry name" value="DUF2975"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11188">
        <property type="entry name" value="DUF2975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="115"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="16774" checksum="F9A607BFEE7D0611" modified="2016-01-20" version="1">MGNLAVLALKVVLACALLGSLVVQGLMVPLFWIDLDDAPTSVRVPLVVVVVLGIVCLQVIAVCLWRLATMVRRGTVFSPRAFRLVDVVIGATATGAVLTFAIAVVLAPGESVAPGIVGLVCGLALVVGGVALLVLVLRMLLVQAVATDSRARVLQSELDEVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWJ2</accession>
    <name>A0A0Q8UWJ2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21815</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46640">
        <property type="protein sequence ID" value="KRC46640"/>
        <property type="gene ID" value="ASE19_21815"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359493" description="MlaD domain-containing protein" evidence="2">
        <location>
            <begin position="20"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="3">
        <location>
            <begin position="22"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="374"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="403" mass="42136" checksum="39BE327869CE42A6" modified="2016-01-20" version="1">MVGGAAALLVVGVVGTAKATDDYNVQVVLPSATNLVPGSPVKIDGFDAGKVSELEVRDGKAVVTVSVSDDFAPLHDGTTARISWKALLGERVLDLTPGADGAAELPDGAIIKGATDRVELDQVLAALDTNTRKELNGLIARLDATVSGSESDLQQTLAAAGPSLEALGQVLSAVGDDGAAIRNLVTRTADMAEIVASRDEEVRGTIDGFSSGVDAVASQQDQLRKALDELPTTLRQARQTLDNVPETVDVAQPLLDDLTPAAARLPGVAKELAPVLTDLRPVAAQLRPTLQALAPLLRVTPGLLDRTNSVLPQAENTLGSLAPAIDFLRPYTPELVGWLSNWGGAAGNYDSNGHYLRAFIQFGATSLNINPGIMPPGVTNQHQRLPGQNEDQPWTDANGSELR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWR5</accession>
    <name>A0A0Q8UWR5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20745</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46273">
        <property type="protein sequence ID" value="KRC46273"/>
        <property type="gene ID" value="ASE19_20745"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="445"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="472"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="504"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="531"/>
            <end position="551"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="571"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="607"/>
            <end position="627"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="663"/>
            <end position="684"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="691"/>
            <end position="712"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="724"/>
            <end position="746"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="758"/>
            <end position="780"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="921"/>
            <end position="943"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="952" mass="100345" checksum="9161F86773A20F13" modified="2016-01-20" version="1">MSHDGASWLPNVLAGLRAQSAPLDSVVAIDTGSKDDSAELVKDALEKHVPLAIRRLPATAGFPDAVADGLQALAEARRDPEWVWLLHDDSNPSPTALAELLAVAEQRPDADILGPKLREWPSLRRLLELGVTISGTGRRETGLERGEYDQGQHDDVHEVFAVNTAGMLVRRSVLEELGGFDAALPIFGNDLDLGWRAAAAGRTTLVVPRAVVFHAEAAHRGIRRTPLTGRHTHFQERRAALFTLLANVRSVALPFQVLRLVLGTALRALGLLCVRAVGEALDELAALVSVLRHPGKVMAARRTRAEAVQALRGADGPDRERVRRLLAPWWLPYRHGLDFFGDLVAAATNQAADVADRRRAAAAERDAATAPPAARHRDEDEDFADTGWVVRFFTNPYALATAVVVLALLIGVRDVVGGVSGGALSPTPAGAGDWWRLHLEGWHPIGFGSGLPAPAYVLPLAVLALPVGPSLLISLLMALAAPIALWGAWRFLRVAGRLVSPYGAPRWLLLWGSVTWALVPLASGAWGGGRWGVVVAAAVLPWLAHAALGFADPDAAHRWRAGWRTGLALALLTAVAPPSWLVFAVLIGVLLASAVRLIPNEVRERSVWGPPVAALVVPLLVLVPWWLPAVFEGGAGGLLLDVGRWPTAASSGWDLLTGRFGDLGAPAAVGLVLPVLALLSLIPAATRIPVVVCWVMAAVAALVGLPLALLSVDIAGGGGQQPGLGIVLLLLQGAWLTAALLGGFSLHHLGDQLRPVQAGLAAAGLVGLVAPLVGLVWFAGWGGEDLTDDPPSDVPVYMAQRAEDADQFGVLVLRGSIADGLSYEVHRGDGSTVGEDEIAALTPEDDEVTAIIRSLVTAPDPDAVQELSERGILYVVQAAPADGAVAASLDATTGLDQASSSRGTRAWQVDPAPGPLPSHHAWIRVLLLVVQAAAIPVLVVLALPPLRRSRDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXM2</accession>
    <name>A0A0Q8UXM2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15490</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893491.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50022">
        <property type="protein sequence ID" value="KRC50022"/>
        <property type="gene ID" value="ASE19_15490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="2">
        <location>
            <begin position="164"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="295" mass="31151" checksum="3383B1CC19981F82" modified="2016-01-20" version="1">MRFELTTDQRDFAASLESLLAAADTVAAARAWADGDHDAGLKLWQRLAEQGVTMLATEATPVEVCIAFEALGRHAVPGPWVESAAYLPVALGREVEGIGTVAAPRALDADIADEVYVAVDSALHTATAGAAYVSVDRSRHLFDVTPGGTVEHGDLAAAYDLAVLATAAQLLGAGERVLADAVTYVKQRKQFGREIGSYQAIKHHLADVRIALDFARPLVFGAALDPTPRSVSAAKVACADAAYLASRTGLQVHGAIGYTQEFDLSVWITRIRALVTAWGTPAEHRARILSTLVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXW5</accession>
    <name>A0A0Q8UXW5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">UvrABC system protein C</fullName>
            <shortName evidence="6">Protein UvrC</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Excinuclease ABC subunit C</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">uvrC</name>
        <name evidence="11" type="ORF">ASE19_15835</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Interacts with UvrB in an incision complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the UvrC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893556.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50088">
        <property type="protein sequence ID" value="KRC50088"/>
        <property type="gene ID" value="ASE19_15835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1036075at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009380">
        <property type="term" value="C:excinuclease repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009381">
        <property type="term" value="F:excinuclease ABC activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00203">
        <property type="entry name" value="UvrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000305">
        <property type="entry name" value="GIY-YIG_endonuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035901">
        <property type="entry name" value="GIY-YIG_endonuc_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003583">
        <property type="entry name" value="Hlx-hairpin-Hlx_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001943">
        <property type="entry name" value="UVR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036876">
        <property type="entry name" value="UVR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004791">
        <property type="entry name" value="UvrC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001162">
        <property type="entry name" value="UvrC_RNase_H_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038476">
        <property type="entry name" value="UvrC_RNase_H_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01541">
        <property type="entry name" value="GIY-YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08459">
        <property type="entry name" value="UvrC_HhH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00465">
        <property type="entry name" value="GIYc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00278">
        <property type="entry name" value="HhH1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46600">
        <property type="entry name" value="SSF46600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82771">
        <property type="entry name" value="SSF82771"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00194">
        <property type="entry name" value="uvrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50164">
        <property type="entry name" value="GIY_YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50165">
        <property type="entry name" value="UVRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3 6" id="KW-0228">DNA excision</keyword>
    <keyword evidence="5 6" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4 6" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="GIY-YIG" evidence="9">
        <location>
            <begin position="16"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="domain" description="UVR" evidence="8">
        <location>
            <begin position="208"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="UVRC" evidence="10">
        <location>
            <begin position="259"/>
            <end position="522"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="473"/>
            <end position="493"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC50088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="657" mass="73004" checksum="F6E90B81AA9C6827" modified="2016-01-20" version="1">MAPAVNYRPAPGSIPTQPGVYRFRDAKGRVIYVGKAKSLRARLSSYFQDITNLHPRTATMVTTATSVEWTVVKTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPWLAVTVSDEFPRVMVGRGAKRRGTRYFGPYSHAWAIRETVDILLRVFPMRSCSNGVFKRSGQIGRPCLLGYIDKCSAPCVGNVSPEDHRAIVDDFCEFMAGRTRPFMKRIEQEMYAASDALDFEKAARLRDDLGAMEKALEKQAVVFGDGSDADVIAVAEDPLEVAVQVFYVRGGRIRGQRGWVADRTDDGDTASLVEHFLLQLYAGVAAEDARDAIPREILVPQLPPEVATWEHLLSDVRGSKVEIRVPQRGDKRTLQETVARNATESLALHKTKRASDLTTRNIALGEIAEALELDEAPLRIECYDVSHIQGTEIVASMVVFEDGLARKGEYRRFVIRDQEGSDDVAAMHEVITRRFKRLLDEQARSELRPGDPAAGTGPMLVDPDTGRPRKFAYAPGLVVVDGGAPQVAAAKRALDELGIDDIPVCGLAKRLEEVWLPGEEDPVILPRTSEGLYLLQRVRDEAHRFAITHHRNRRSKSMVESVLDGVPGLGEVRRKTLLRHFGSLRKLRAATVEEIAAVPGVGPRTAAAIKEALDREDTGTAARKKAAPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY27</accession>
    <name>A0A0Q8UY27_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_22430</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46657">
        <property type="protein sequence ID" value="KRC46657"/>
        <property type="gene ID" value="ASE19_22430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="10"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="125"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="232"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="382" mass="42188" checksum="14037F9DCDC8D852" modified="2016-01-20" version="1">MPERPSIYETEHEDFRQTVRAFMEREVKPFHEQWEKDGVVSREVWRKAGEAGILSFEVPEEYGGLGIKDFRYNMVVAEECARAGASGPGFAVHTDIIVPYIVAIGNDEQKARWLPGTVSGETITAIAMTEPGAGSDLQGIRTTAVDKGDHYVLNGSKTFISNGILSDLVIVVARTNPEAGAHGISLLVVEEGMEGFTRGRNLEKLGLKAQDTAELSFDNVIVPKTNLLGEEGQGFVYLMQNLPQERVSIACIAIAAIEHTLDLTLDYVKTREAFGKPIGKLQNTRFTLAEMATEAYVARTFVNHCVEQLNKGEVDTALASMAKWWTTELQKKIVDQGVQMHGGYGYMMEYPIAKAYADTRIQTIYGGTTEIQKEIIGRFLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYL8</accession>
    <name>A0A0Q8UYL8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cupin_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16640</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893697.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50228">
        <property type="protein sequence ID" value="KRC50228"/>
        <property type="gene ID" value="ASE19_16640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1928636at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_2" evidence="1">
        <location>
            <begin position="49"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="17319" checksum="C96F3849C0AA9B3C" modified="2016-01-20" version="1">MQEEIAMSLAYIAQAADHDRIEWIGGHELQILLDGDQPAGQVTVVRSSLGAGSAAPLHVHRKEDEMFVVLKGHGTFWVGDARHEVGEGGAVFLPRDVPHAYRFDAPEVDLLTICTPSGMEGFFRGAGRRVTDPRPDGWEVTMEALAAAAVAGGQEILGPPPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V085</accession>
    <name>A0A0Q8V085_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MarR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21775</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896224.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46455">
        <property type="protein sequence ID" value="KRC46455"/>
        <property type="gene ID" value="ASE19_21775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1744037at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="38"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="185" mass="20977" checksum="ADC85D9DBA72C1AC" modified="2016-01-20" version="1">MSNRVKKAPVRRAGAGVDGVDAVEADWRRERPDIDVSSIGVVTRVWRVGRYLDRVRNDRLSDWDTDRATIDILAMLRRAGEPYRQSAGQLTKHSLITSGGVSQRLDKLERAGLISRHLDVNDRRRVDVQLTPEGMKLIDSVFHDVVHNENDLLGEIFDADETEQLRGLLRKFLLHFEPSGAVRAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0Q7</accession>
    <name>A0A0Q8V0Q7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Molybdopterin synthase sulfur carrier subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22540</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896352.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46583">
        <property type="protein sequence ID" value="KRC46583"/>
        <property type="gene ID" value="ASE19_22540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1995573at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="SSF54285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="92" mass="9741" checksum="9350AA0B17F3A15F" modified="2016-01-20" version="1">MAVSVRIPTILRTYTGGESEVSANGANVAEILDDLDATYAGIKGRIVDEDGKLRRFVNVYVNNDDVRFEQDLATPTPDGAEVSVIPAVAGGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0T5</accession>
    <name>A0A0Q8V0T5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cysteine synthase</fullName>
            <ecNumber evidence="4">2.5.1.47</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">cysM</name>
        <name evidence="4" type="ORF">ASE19_20555</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.47" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896384.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46615">
        <property type="protein sequence ID" value="KRC46615"/>
        <property type="gene ID" value="ASE19_20555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1033353at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004124">
        <property type="term" value="F:cysteine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006535">
        <property type="term" value="P:cysteine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001216">
        <property type="entry name" value="P-phosphate_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00901">
        <property type="entry name" value="CYS_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PALP" evidence="3">
        <location>
            <begin position="9"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="34646" checksum="F7DD38378C7E9C72" modified="2016-01-20" version="1">MRYDSLLTSVGGTPLVGLPRLSAPFNTPGAPEVRIWAKLEDRNPTGSIKDRPALRMIEEAEKDGTLRPGCTILEPTSGNTGISIAMAAKLKGYRTVFVMPENTSEERRQLLRMWGAEIVSSPAAGGSNEAVRVAKLMAAEHPDWVMLYQYGNAANALAHEEGTGPEIFADLPSITHFVAGLGTTGTLMGVSRFFRRAQPDVRIVAAEPRYGELVYGLRNLDEGFVPELYDAELIDSRFSVGPRDAVRRVRELLELEGIFAGISSGAILHAALGQAAKAAKAGERADIAFVVADGGWKYLSTGAYEGTIDEAEDRLEGQLWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1T2</accession>
    <name>A0A0Q8V1T2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF1524 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15115</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896481.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51414">
        <property type="protein sequence ID" value="KRC51414"/>
        <property type="gene ID" value="ASE19_15115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1510738at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011089">
        <property type="entry name" value="DUF1524"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07510">
        <property type="entry name" value="DUF1524"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359624" description="DUF1524 domain-containing protein" evidence="1">
        <location>
            <begin position="27"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1524" evidence="2">
        <location>
            <begin position="137"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="239" mass="25117" checksum="693EF56051C61151" modified="2016-01-20" version="1">MRNAVVVLVALAAALPLTSCRLVDDAALSVDAGGDLAAPVGTVGLPDADEARAMLAGLTVTGRPRPASDYDRDAFGSSWRDVDGNGCNQRDDVLLRDAEPGSVRTGDQGSCDHDVLAGTWTDPYTARVLVLDDLKDPAQAQAVQIDHVVPLAEAWVSGAAAWDDARREQYANDLGALLAVDGPTNASKGADDPAAWRPRKAYQCAYAARWVATKSRWSLTVDPSEVAALEEMLATCTGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1U4</accession>
    <name>A0A0Q8V1U4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8 9">Uroporphyrinogen decarboxylase</fullName>
            <shortName evidence="8">UPD</shortName>
            <shortName evidence="8">URO-D</shortName>
            <ecNumber evidence="4 8 9">4.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">hemE</name>
        <name evidence="13" type="ORF">ASE19_15245</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 9">
            <text>4 H(+) + uroporphyrinogen III = 4 CO2 + coproporphyrinogen III</text>
            <dbReference type="Rhea" id="RHEA:19865"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57308"/>
            <dbReference type="ChEBI" id="CHEBI:57309"/>
            <dbReference type="EC" id="4.1.1.37"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 8 9">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 4/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8 10">Belongs to the uroporphyrinogen decarboxylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.37" evidence="4 8 9"/>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896505.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51438">
        <property type="protein sequence ID" value="KRC51438"/>
        <property type="gene ID" value="ASE19_15245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1104410at2"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00321"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004853">
        <property type="term" value="F:uroporphyrinogen decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00717">
        <property type="entry name" value="URO-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00218">
        <property type="entry name" value="URO_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038071">
        <property type="entry name" value="UROD/MetE-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006361">
        <property type="entry name" value="Uroporphyrinogen_deCO2ase_HemE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000257">
        <property type="entry name" value="Uroporphyrinogen_deCOase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01208">
        <property type="entry name" value="URO-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51726">
        <property type="entry name" value="SSF51726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01464">
        <property type="entry name" value="hemE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00906">
        <property type="entry name" value="UROD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00907">
        <property type="entry name" value="UROD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 8 9" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="6 8 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="7 8 9" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Uroporphyrinogen_deCOase" evidence="11">
        <location>
            <begin position="23"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="domain" description="Uroporphyrinogen_deCOase" evidence="12">
        <location>
            <begin position="144"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="28"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="211"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="324"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="8">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00218"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS00906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS00907"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC51438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="348" mass="36798" checksum="22FE390288698567" modified="2016-01-20" version="1">MTTALRDSAFLKAARGEAVPHTPVWFMRQAGRSLPEYLKVREGVGMLESCMNAELITEITLQPVRRYGVDAAIFFSDIVLPLKAVGVDLDIKPGVGPVVAAPVRTLDDVAAIPDLTPEQIPYITAAVQNLVGELAGINGGTPLIGFAGAPFTVASYLVEGGPSKEHAKTKALMFGAPDVWDALMRKISDISAVFLETQVAAGASAIQLFDSWAGALTPGDYVRHVQPHSARVLARVGELGVPKIHFGVGTTNLLDLMGEAGADVVGVDWRTPLDRAIPVVGDRSVQGNLDPTLVFAPTDVMTARAAEVIEAGRAARGHIFNLGHGVIPSTDPDQLARLTEFVQGYPLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1W9</accession>
    <name>A0A0Q8V1W9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_15320</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896516.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51451">
        <property type="protein sequence ID" value="KRC51451"/>
        <property type="gene ID" value="ASE19_15320"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="9"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="154"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC51451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="223" mass="23404" checksum="F12B22CD667EEE47" modified="2016-01-20" version="1">MSDPVRPISVVVVDDHQIVRDGLVALLGALEGIEVVGTAADGREALHVVQEAAPDLVVMDIQMPHLDGIEATRFLTGRTPALRVVMLTMNEDDDTILAAIRAGACGYLLKGAGADEVQHAIRAAAAGGMVFGASLAARVAAFFAGALAQPAAAEEDAFPELTERERDILHRIAAGRTNDEIAGELYVSNKTVRNAVSAIYAKLHATGRADAIVKAREAGYGRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3Q2</accession>
    <name>A0A0Q8V3Q2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18335</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893278.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48877">
        <property type="protein sequence ID" value="KRC48877"/>
        <property type="gene ID" value="ASE19_18335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="159"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="233" mass="25605" checksum="3BAF299665836FF3" modified="2016-01-20" version="1">MSSSTFADEAARRVVLVADRRLVGQAIAAALNAQGFRSTVLEWPERRRTMVFRGRLARTGARVGVVLCDLRTPDLLHDVEVLVSRGPVRWLVLTDSALGPRWGTVLTAGAVGVLPTTTTTAGLVTGLRETMAGRSPTPDPLRTRAVREWEDVAEGQRDLVRRMELLTHREYEILGSLYDGISVREIAEASGVAEATVRSQVKSLRRKLGVDSQLAAVAMYRRSLEVFPRFGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3Z4</accession>
    <name>A0A0Q8V3Z4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pyridoxal 5'-phosphate synthase subunit PdxS</fullName>
            <shortName evidence="3">PLP synthase subunit PdxS</shortName>
            <ecNumber evidence="3">4.3.3.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Pdx1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">pdxS</name>
        <name evidence="6" type="ORF">ASE19_19025</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>aldehydo-D-ribose 5-phosphate + D-glyceraldehyde 3-phosphate + L-glutamine = H(+) + 3 H2O + L-glutamate + phosphate + pyridoxal 5'-phosphate</text>
            <dbReference type="Rhea" id="RHEA:31507"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58273"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
            <dbReference type="EC" id="4.3.3.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Cofactor biosynthesis; pyridoxal 5'-phosphate biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">In the presence of PdxT, forms a dodecamer of heterodimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 4">Belongs to the PdxS/SNZ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.3.6" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893391.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48989">
        <property type="protein sequence ID" value="KRC48989"/>
        <property type="gene ID" value="ASE19_19025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="784095at2"/>
    <dbReference type="UniPathway" id="UPA00245"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036381">
        <property type="term" value="F:pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042823">
        <property type="term" value="P:pyridoxal phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04727">
        <property type="entry name" value="pdxS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01824">
        <property type="entry name" value="PdxS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001852">
        <property type="entry name" value="PdxS/SNZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033755">
        <property type="entry name" value="PdxS/SNZ_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31829">
        <property type="entry name" value="PTHR31829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01680">
        <property type="entry name" value="SOR_SNZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029271">
        <property type="entry name" value="Pdx1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00343">
        <property type="entry name" value="TIGR00343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01235">
        <property type="entry name" value="PDXS_SNZ_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51129">
        <property type="entry name" value="PDXS_SNZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0704">Schiff base</keyword>
    <feature type="domain" description="SOR_SNZ" evidence="5">
        <location>
            <begin position="14"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="region of interest" description="D-ribose 5-phosphate binding" evidence="3">
        <location>
            <begin position="242"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with D-ribose 5-phosphate" evidence="3">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>D-ribose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>D-ribose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>D-ribose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC48989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="301" mass="31892" checksum="85D0E0D8DF172634" modified="2016-01-20" version="1">MSEQAEPTSGQGTTRVKRGMAEMLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRAQGGVSRMSDPDMIDGIIEAVSIPVMAKARIGHFAEAQVLQSLGVDYIDESEVLTPADYANHIDKWAFTVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSNAVTHMRTIRAELRRLTVLSDDELYVAAKELQAPYDLVVEVARSGKLPVVLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGNPAQRAEAIVKATTFFDDPDVVAKVSRGLGEAMVGINVDELPQPHRLAERGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V446</accession>
    <name>A0A0Q8V446_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">rRNA cytosine-C5-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_19395</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="5">Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893455.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49053">
        <property type="protein sequence ID" value="KRC49053"/>
        <property type="gene ID" value="ASE19_19395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1064993at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001510">
        <property type="term" value="P:RNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.940.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001678">
        <property type="entry name" value="MeTrfase_RsmB/NOP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035926">
        <property type="entry name" value="NusB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006027">
        <property type="entry name" value="NusB_RsmB_TIM44"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023267">
        <property type="entry name" value="RCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22807">
        <property type="entry name" value="PTHR22807"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01189">
        <property type="entry name" value="Methyltr_RsmB-F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01029">
        <property type="entry name" value="NusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02008">
        <property type="entry name" value="RCMTFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48013">
        <property type="entry name" value="SSF48013"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51686">
        <property type="entry name" value="SAM_MT_RSMB_NOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 5 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SAM_MT_RSMB_NOP" evidence="6">
        <location>
            <begin position="179"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="5">
        <location>
            <begin position="274"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="5">
        <location>
            <position position="395"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="299"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="325"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="342"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC49053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="459" mass="47858" checksum="F14DDC2AAEF2075B" modified="2016-01-20" version="1">MGPRRAAARHGHLRVKRVDPARLAAFEVLKAVRVDDGYTNLLLPAALARHGLTGRDAAFATELASGTIRRQGTYDAVLAACIDRQLRKVEAKVLDALRLGAHQLLAMRVPTHAAIDTTVTLVRAQVNQGAAGFANAVLRKVAAQDLDAWLAQVAPGSGTRDLAVAHSHPAWVVDELRTALGDAAAELPDLLAADNAAPRVTLVARPGLAARDELPGTPTPYSPFGVVLEAGDPAAVPAVVEGRAGVQDEGSQLVALALATSPLEGRDERWIDLCAGPGGKAALLAALAGERGAALTGVELHHHRARLVARAASAGAGLAGVVQSDATRAPFADAGADRILLDAPCSGLGALRRRPEARWRRSAKDVAELVPLQKALLGEAIRVLRPGGVLLYATCSPVLAETSGVVTAALAEHPEMQLDDVRACLPAVPDAEGPLPGTVQLWPHRHGTDAMFLALLRKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V587</accession>
    <name>A0A0Q8V587_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Flagellar basal body rod protein FlgB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_09235</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">The basal body constitutes a major portion of the flagellar organelle and consists of a number of rings mounted on a central rod.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894551.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52613">
        <property type="protein sequence ID" value="KRC52613"/>
        <property type="gene ID" value="ASE19_09235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914857at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030694">
        <property type="term" value="C:bacterial-type flagellum basal body, rod"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001444">
        <property type="entry name" value="Flag_bb_rod_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019776">
        <property type="entry name" value="Flagellar_basal_body_rod_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006300">
        <property type="entry name" value="FlgB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00460">
        <property type="entry name" value="Flg_bb_rod"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002889">
        <property type="entry name" value="Rod_FlgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01396">
        <property type="entry name" value="FlgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00588">
        <property type="entry name" value="FLAGELLA_BB_ROD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="7" id="KW-0966">Cell projection</keyword>
    <keyword evidence="7" id="KW-0969">Cilium</keyword>
    <keyword evidence="7" id="KW-0282">Flagellum</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_bb_rod" evidence="6">
        <location>
            <begin position="15"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00014376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00024934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR002889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="122" mass="12810" checksum="B1CF4CFFE409FE6C" modified="2016-01-20" version="1">MSFAASDAVGFVLHTAINGLSTRQNVIADNIANVDTPGFRARSVEFESALERAIERGGAMTSGPGAIGATVEATETPVGANDNNVDLRKESIAAIQTQYQYQIMGRAISDRSSRLSTMGGAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5I4</accession>
    <name>A0A0Q8V5I4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19055</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893396.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48994">
        <property type="protein sequence ID" value="KRC48994"/>
        <property type="gene ID" value="ASE19_19055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2018195at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="20691" checksum="E3FB6CC76A1E8007" modified="2016-01-20" version="1">MTTARPRDPRRRRSLVLAAAGALAAALLVLGVSGTLSSWTRAILTNDTNTLEAAQSLILEETGPGAVVCTSTDGGGSGNAFTCSTIDKYGGTASPLGPGDHQSVTVTLKNTGTTSGPLALAPGVCATSGGSPTATASICDTAEVTLVCTAPSAVDTTGSPVVLSAFGDQAVVVTLAAGASTDCTFDVALPVSASPQVAGQTATQPLVWTLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5M0</accession>
    <name>A0A0Q8V5M0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glucosyl-3-phosphoglycerate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894588.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52650">
        <property type="protein sequence ID" value="KRC52650"/>
        <property type="gene ID" value="ASE19_09435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1064289at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="28"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="295" mass="31457" checksum="35FA4045EF535F74" modified="2016-01-20" version="1">MGIHAAHWDDWSLEGLLGRKGELGQRVSLVVPARNEAATVGAVVSRVREALVDTVSLVDEIVVIDSDSVDDTYAVAESAGARVHRAAEIRPDLGSHPGKGEAMWKSLFVTTGDLLVFMDADLHDWDTHFVPGLLGPLLHAPEVQLVKGFYDRPGADGPLEGGRVTELVARPLIALLFPELGPLVQPLAGEWAVRRSWFAGLSVPTGYAVELAALVDTVRRGGPSAIAQVGLGVRAHRHQALRDLGGMATQIIAAALARSGVAAADEAVLRQYLRGLEPVEHVVPTLERPPAEDHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5S0</accession>
    <name>A0A0Q8V5S0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Nitrile hydratase</fullName>
            <ecNumber evidence="3">4.2.1.84</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_09135</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>an aliphatic amide = a nitrile + H2O</text>
            <dbReference type="Rhea" id="RHEA:12673"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18379"/>
            <dbReference type="ChEBI" id="CHEBI:65285"/>
            <dbReference type="EC" id="4.2.1.84"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the nitrile hydratase subunit alpha family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.84" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894533.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52596">
        <property type="protein sequence ID" value="KRC52596"/>
        <property type="gene ID" value="ASE19_09135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1525291at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080109">
        <property type="term" value="F:indole-3-acetonitrile nitrile hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036648">
        <property type="entry name" value="CN_Hdrase_a/SCN_Hdrase_g_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004232">
        <property type="entry name" value="CN_Hdrtase_a/SCN_Hdrlase_g"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023900">
        <property type="entry name" value="CN_Hdrtase_asu/SCN_Hdrlase_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018141">
        <property type="entry name" value="Nitrile_hydratase_asu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02979">
        <property type="entry name" value="NHase_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001426">
        <property type="entry name" value="NHase_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56209">
        <property type="entry name" value="SSF56209"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01323">
        <property type="entry name" value="nitrile_alph"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NHase_alpha" evidence="7">
        <location>
            <begin position="10"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001410"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR001426-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="199" mass="21939" checksum="4119FCFBF50B7477" modified="2016-01-20" version="1">MSSTVRTPEEIAARVKALESMLIESGVMTTQAIDRMVEIYENEVGPQLGAQVVVRAWTDPAFKARLVADASEACKELGISGLQGEDMVVVENTEAVHNVIVCTLCSCYPWPVLGLPPNWYKDPQYRAAITREPRKVLRESFGFTVPDDVEVRVWDSSSEMRYWVLPQRPAGTEGWSDEQLLALVTRDAMIGVGPVGAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6E2</accession>
    <name>A0A0Q8V6E2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_11320</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894912.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52981">
        <property type="protein sequence ID" value="KRC52981"/>
        <property type="gene ID" value="ASE19_11320"/>
    </dbReference>
    <dbReference type="OrthoDB" id="692375at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="16"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="156"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="181"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="242"/>
            <end position="439"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC52981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="439" mass="45389" checksum="B901AB7FBAE99031" modified="2016-01-20" version="1">MTGGLPARGGSFRTQLVVLTAAVTALAAVVLTIVVQLVLERATTHSLDTVLEDRTEAVIGSASAGPGGSLVVPEERLDAGVAVYDVTGRLAAGSPPASQRDAYADLSTTRRVRTVERTGDGDESRIRAEPFTTSDGAAGVVVVTERQAPYERGERLAVLVCVGAGGLMVLLAAGLAFWVSRRALAPVVAMTRAADDWSEHDLASRFDPGPGRNELASLGRTLDRLLGRVAHAIRSEQRLTSELAHELRTPLTAVQLNADLLLLDPGLSAAGREKAEEIAGAARRMGAAIESLLELARTASASALSGSCRLVDAIGEALGSPDGTAVEVDVDPELRLLLPVGLAARALGPVLDNARAVAGRVVVSAAPYRTGFVAVRVDDDGPGIGADDRERVFEPGRTTGDGAGLGLPLSRRIARSTGGDVTVADGPLSTRVEIVLPTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6M1</accession>
    <name>A0A0Q8V6M1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10965</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52918">
        <property type="protein sequence ID" value="KRC52918"/>
        <property type="gene ID" value="ASE19_10965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2022437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021530">
        <property type="entry name" value="DUF2877"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11392">
        <property type="entry name" value="DUF2877"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="256" mass="25692" checksum="10F16FD7D47018B7" modified="2016-01-20" version="1">MPGAGSPTLRRLLATGPASGRVLHSSASAAYVRFGEGPGNRVVGIVTRQAVHVPCAIATTLAELPEVMVGERVTVHDGRLLLGGLAVGVDRLVATTTPPMGDPRLAGRQLAAVLPGLDVVRSQLPAAALVALTSGSAAAVPELVGRGDGLTPVGDDVLAGWLVTTRAAGRPVHAVGTAVLGHLGRTTDLSATLLADAVAGASIPQFRAVLLAADTGRELTHAVTELLSVGHTSGAGMLLGAALSLTTTPLLERSPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V702</accession>
    <name>A0A0Q8V702_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">PAP2_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_18225</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48855">
        <property type="protein sequence ID" value="KRC48855"/>
        <property type="gene ID" value="ASE19_18225"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026841">
        <property type="entry name" value="Aur1/Ipt1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14378">
        <property type="entry name" value="PAP2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="126"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="159"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="230"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="256"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="280"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="domain" description="PAP2_3" evidence="6">
        <location>
            <begin position="123"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF14378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC48855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="317" mass="35698" checksum="49DE5CA6051421A7" modified="2016-01-20" version="1">MDLARVAGVAVFVVGLAAYMQVNGLPRQGYQVVIILWLATVAWDVRRPVREHLAFLRDWWPPFAVLLLYLYSRGVSDNLGILSVSYSWPVDADRWLFGGTLPTEFLQAHLCGVPCRQSMPPRWYDVVLTTVYYSHFFAALAIGAVLWKRNRTAWVGYMRRYLAIMLLSVAGYILYPMAPPWMAARDGYLSSDVARITGRGWFDLTASARSTTASQATTAQQDLSSIGNQVAAMPSLHSALAIFIAWWVITHFRNPWRWSVLLYPASMLFSLVYYAEHYVVDEIAGGLLVLVVVTGAAWWDRRRRSGRPAAEAVRDAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V789</accession>
    <name>A0A0Q8V789_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Disulfide bond formation protein DsbA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_11475</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894937.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53007">
        <property type="protein sequence ID" value="KRC53007"/>
        <property type="gene ID" value="ASE19_11475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1558246at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="34"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="99"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="132"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="159"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="185"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="225"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="251"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="296"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="322"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="356"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="384"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="430"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="474"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="34"/>
            <end position="500"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="505" mass="51756" checksum="EB46B6121D19FB6A" modified="2016-01-20" version="1">MPRPDRQLQGHVTSPTAAPITRASVGLRSDRGPILASVMLSTALVAIDTTILATAVPAVVEDLGGFTQFPWLFSTYLLAQAVTTPIYGKLADVFGRKPLMLLGIGLFVLGSVLCALSWSMTALIVFRAVQGLGAGAIQPAGVTIMGDIYSVAERAVAQSYVAGVWATAAVVGPTLGGIFSEQLSWRWIFWINVPLGALAAVVLARRFHETAAGDARAAQTERRPIDVTGAVLLAGAAVLLLLGLLEGGLRWAWWSPAGVGIFAAAAVLLAAFVAVEQRVADPVLPLWVFRHRVLNSANVGALIVGMLMLGVTSYVPVYAQRVLGAGAVVAGLAVAALAIGWPIAASTAGRVYVRWGFRPCLLAGSLFGLAGTTIIALVGPGSPVWLMALGCLVLGLGLGYVASPGIVAAQSAVPWHHRGVATATNMFARSVGSAIGVALFGAVANGVVASRLGGGHHAGDADLDALPVAVLDPALHAVFVGVLIASLALVVAGLVMPRKFEPAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V798</accession>
    <name>A0A0Q8V798_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11890</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895013.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53083">
        <property type="protein sequence ID" value="KRC53083"/>
        <property type="gene ID" value="ASE19_11890"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010424">
        <property type="entry name" value="EutQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06249">
        <property type="entry name" value="EutQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="115" mass="12757" checksum="32256F3832AFE59F" modified="2016-01-20" version="1">MTGVTVTKPSYSAAEDRDFGPAKIEHRTAGTALSKLGTYFMVFQEDFYSDPWQLQYEESIFVIKGQLRIREGDKVTVGDPGDLVVLPKGVIVEYGGDIGTEVVLSITPVNWRDEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7C2</accession>
    <name>A0A0Q8V7C2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Probable transcriptional regulatory protein ASE19_19080</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_19080</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the TACO1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893401.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48999">
        <property type="protein sequence ID" value="KRC48999"/>
        <property type="gene ID" value="ASE19_19080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1304328at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.980">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00693">
        <property type="entry name" value="Transcrip_reg_TACO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017856">
        <property type="entry name" value="Integrase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002876">
        <property type="entry name" value="Transcrip_reg_TACO1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026564">
        <property type="entry name" value="Transcrip_reg_TACO1-like_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029072">
        <property type="entry name" value="YebC-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12532">
        <property type="entry name" value="PTHR12532"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01709">
        <property type="entry name" value="Transcrip_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75625">
        <property type="entry name" value="SSF75625"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01033">
        <property type="entry name" value="TIGR01033"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 4" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="255" mass="27147" checksum="39EE2B8404D37811" modified="2016-01-20" version="1">MSGHSKWATTKHKKAAIDAKRGKLFAKLIKNIEIAAKMGGPDPTGNPTLFDAIQKAKKQSVPNKNIDSAVKRGGGLEGGGVDYETIMYEVYGPQGVALLVECLTDNRNRAAMEVRTAVTRNGGTMADPGSVSRLFTRKGVVVVAKQQEGKEVSEDDLLEATLDAGAEDVADHGEAFEIQSEATDVVAVRSALQDAGIDYESAEVQFVASMDIPVADPVAAGKVFKLVDAVDDLDDVQNVFSNADIPDEVLDQVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7I3</accession>
    <name>A0A0Q8V7I3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Prephenate dehydratase</fullName>
            <ecNumber evidence="3">4.2.1.51</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_12230</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H(+) + prephenate = 3-phenylpyruvate + CO2 + H2O</text>
            <dbReference type="Rhea" id="RHEA:21648"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:18005"/>
            <dbReference type="ChEBI" id="CHEBI:29934"/>
            <dbReference type="EC" id="4.2.1.51"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-phenylalanine biosynthesis; phenylpyruvate from prephenate: step 1/1.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.51" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895067.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53140">
        <property type="protein sequence ID" value="KRC53140"/>
        <property type="gene ID" value="ASE19_12230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1280729at2"/>
    <dbReference type="UniPathway" id="UPA00121">
        <property type="reaction ID" value="UER00345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004664">
        <property type="term" value="F:prephenate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009094">
        <property type="term" value="P:L-phenylalanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001086">
        <property type="entry name" value="Preph_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018528">
        <property type="entry name" value="Preph_deHydtase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00800">
        <property type="entry name" value="PDT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00857">
        <property type="entry name" value="PREPHENATE_DEHYDR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51171">
        <property type="entry name" value="PREPHENATE_DEHYDR_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="8 11" id="KW-0456">Lyase</keyword>
    <keyword evidence="7" id="KW-0584">Phenylalanine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Prephenate dehydratase" evidence="9">
        <location>
            <begin position="3"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="10">
        <location>
            <begin position="193"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC53140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="276" mass="29696" checksum="13F0F180528BFE99" modified="2016-01-20" version="1">MARIAYQGEPGANSHIVCRQHYPDAEAVPCASFEDVFAAVASGDCDLALIPIDNSIAGRVADIHHFLPDSGLHIVAEHFLRIQFHLMVNPGASVDTIRTVHSHVHALGQCRKVIRELGLTPLISGDTAGAAREVAEAADLTQAAIAPPLAAEIYGLEILREDVEDEDHNTTRFVLLSPEFVAAPQGNGPVVTSFVFNVRNLPAALYKALGGFATNGINMTKLESYMVGGEFTATQFLAEVDGHPDDPDLKRALEELTFFTTDIKVLGVYPADPFRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7S7</accession>
    <name>A0A0Q8V7S7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13095</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895750.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53288">
        <property type="protein sequence ID" value="KRC53288"/>
        <property type="gene ID" value="ASE19_13095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1122642at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="231" mass="24579" checksum="1A7E2C4EF0C01322" modified="2016-01-20" version="1">MGVLLLVRHGQASFGSDDYDVLSATGWEQGRVLGRWLAEHGPVPGSVVHGGMRRHRETWEAIASGLTATPAAGVDEVGVDQVGVDQDWAEFDHLAVLARHAELTGVVMDHGVDRRAFQEHFEVATGHWTTADVNAGYPEPYDAFVARARRALTAASTLPGPAVVVTSGGVIAALAAALVVPEGGEIGPVWARFNTVIANTSVTRVIVGATGARLLTFNEHPHLPRELVTYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8B0</accession>
    <name>A0A0Q8V8B0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16360</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893646.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50178">
        <property type="protein sequence ID" value="KRC50178"/>
        <property type="gene ID" value="ASE19_16360"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1900922at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="7"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="138" mass="14786" checksum="4D6CCE42583BB27A" modified="2016-01-20" version="1">MTAMDISIQHSFLPQTDPDASLAFYRDVLGFEVLNDVGYGDMRWITVAPAGKGGPSIVLAPPAADPGITEDEKSTIAEMMAKGTYATVVLSTSDLDGIFDRIQATGAEVIQEPIDQPYGVRDCAFRDPAGNHVRINQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8D3</accession>
    <name>A0A0Q8V8D3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">30S ribosomal protein S18</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpsR</name>
        <name evidence="6" type="ORF">ASE19_13825</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the bacterial ribosomal protein bS18 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_038682917.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53419">
        <property type="protein sequence ID" value="KRC53419"/>
        <property type="gene ID" value="ASE19_13825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1940575at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00270">
        <property type="entry name" value="Ribosomal_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001648">
        <property type="entry name" value="Ribosomal_S18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018275">
        <property type="entry name" value="Ribosomal_S18_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036870">
        <property type="entry name" value="Ribosomal_S18_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13479">
        <property type="entry name" value="PTHR13479"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01084">
        <property type="entry name" value="Ribosomal_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00974">
        <property type="entry name" value="RIBOSOMALS18"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46911">
        <property type="entry name" value="SSF46911"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00165">
        <property type="entry name" value="S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00057">
        <property type="entry name" value="RIBOSOMAL_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="78" mass="8745" checksum="9308D672906CA02B" modified="2016-01-20" version="1">MAKAVVRKPKKKVCQFCKEKATGVDYKDTALLKKFISDRGKIRARRVTGNCVQHQRDIAIAVKNAREVALLPYTSAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8J7</accession>
    <name>A0A0Q8V8J7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16905</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893743.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50274">
        <property type="protein sequence ID" value="KRC50274"/>
        <property type="gene ID" value="ASE19_16905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1407012at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="241" mass="24705" checksum="5AF0464D662B9F06" modified="2016-01-20" version="1">MSGLPASARLAWWGTAWLQGRIGPDAFLDGILGDDVAHVVGGADGSSPVLLELADARNRGATGVAAAFPVPGDPAGLRGPRELTAAAIDAGQVALLLGAERALVPVQVGRAVEWTLLPAVRRPPPDLGEADRALRAGLLTAANLLADLDVAAWRPEVADELHDLRTAVPLTAPEGTPTLCVDLAGRALHLWDVTELALADDGGALSAGEAMARRAAIEPLEQAARHALGAACSPDGWPPSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V994</accession>
    <name>A0A0Q8V994_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inorganic phosphate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_07505</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895350.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53918">
        <property type="protein sequence ID" value="KRC53918"/>
        <property type="gene ID" value="ASE19_07505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1329125at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001204">
        <property type="entry name" value="Phos_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11101">
        <property type="entry name" value="PTHR11101"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01384">
        <property type="entry name" value="PHO4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="41"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="80"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="116"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="142"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="224"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="311"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="342" mass="36018" checksum="A68212DDD71289B7" modified="2016-01-20" version="1">MDLTLAIVIAVVVIALAFDYTNGFHDAANAIATSVSTRALTPRIALTLAALMNFIGALLGQEVAKTVADVVTIEDDTGHLLVGVHHGLVIVMAGLLGAIIWNLITWYFGLPSSSSHALIGGLVGAAFAGGVEVKWDTIVQKVLIPMVISPLFGFCAAFAVMTAILWIFRRGNPHRINRGFRGMQTISAAALALGHGLQDAQKTMGVILLTLVIAYPGSYDIETLPIWVVIAAAGAISAGTYAGGWRIMRTLGRKIIHLDPPRGFAAESVGAGVLYTTAFVFHAPISTTHTITSAVMGAGATKRFSAVRWGMARTILAAWVSTFPAAALAAWGCYEVLKLVLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9C4</accession>
    <name>A0A0Q8V9C4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_06795</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895231.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53800">
        <property type="protein sequence ID" value="KRC53800"/>
        <property type="gene ID" value="ASE19_06795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="13"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="130"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="277"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="379" mass="41331" checksum="485313D3D642ED9B" modified="2016-01-20" version="1">MSSSNAVGAAPRDEHVNLRREVRALVETWRQQGRYQPRSDSWLRGFDPAFSKELARRGLIGITWPTDVGGRGLSNTARLAVTEELLRAGAPVAAHWVGDRQIGPAIIRHGSETLRKEILPGIVAADYVFCLGMSEPEAGSDLASLRTTATKVDGGWVIKGRKIWTSGAHHATHMYLLARTSRGEKKQSGLTEFILDMDTSGISVSPIVDLAGEHHFNEVLFEDAFVPDGRVLGSIDNGWAQVVEQLSFERGGPERFLSTYPVFAELLDVARDGVIDVRADLGHLVARLATLRQLAWQVARALDAGEAPVQQAATLKYLGNAFEHDVLEVARKAYSDSGLRPGRLRNDGFRQALLASPGYSIRGGAAEVLLSLIARQEVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9L1</accession>
    <name>A0A0Q8V9L1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07665</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895379.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53948">
        <property type="protein sequence ID" value="KRC53948"/>
        <property type="gene ID" value="ASE19_07665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1584591at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="244"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="269"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="32"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="131"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="385" mass="41298" checksum="A746FF61FF08FF89" modified="2016-01-20" version="1">MGSNDEFGPDTETIRAWLAKRATYAKDARVVGAPRGTLTAEVPTYTPRVPEATEPAEPTETDEPHDVVDETPAPPTAPTSRPTAGWPDTRDAGRSVLDALGDETPSRNTPAGPGSPGADSTAAGRSVVDALRADDPPRAKARPDRADKQRSGNEKPGKEKSGKEKGDQPVERPAPTGRASKSVRVSAPAGRTKYQASDRPAPHYEAPTTQPVRRGRWTEPEENLNSVEATTDVTFPVRKGARRALAWVLLASALATGAASYLASLDRTPAMIVIASVLGVLTLTVWAVRASMVTTEITIRRGKLTVTRAGHSEMVEISGNHTTIAIIGEPGHRRWTVLFERPGLPLVVVNESMVDAHWFTSALYRLRPDLRPGYDASDSYADAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9S4</accession>
    <name>A0A0Q8V9S4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_07080</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895276.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53844">
        <property type="protein sequence ID" value="KRC53844"/>
        <property type="gene ID" value="ASE19_07080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="18"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="109"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="175" mass="19477" checksum="978AB56A28AB4E6E" modified="2016-01-20" version="1">MDPENESAYADYVEQSWPSLVRAAVFLGARPDEAEDLAQTTLVRCYTGWGRVSSADNRDAYVYRMLLNCLRDTRRTRWWKDRQYDAAEALDRPATGRGSDAAERVAIADAVHRALGSLTKPNRDVVVLRYFVQLTEKQTAEALGVPPGTVKSRLSRALAHLAANDHLLDLSGDAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9T0</accession>
    <name>A0A0Q8V9T0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Flagellar biosynthesis protein FlhA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7 8" type="primary">flhA</name>
        <name evidence="8" type="ORF">ASE19_09350</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894571.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52633">
        <property type="protein sequence ID" value="KRC52633"/>
        <property type="gene ID" value="ASE19_09350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="436367at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042194">
        <property type="entry name" value="FHIPEP_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042193">
        <property type="entry name" value="FHIPEP_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042196">
        <property type="entry name" value="FHIPEP_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025505">
        <property type="entry name" value="FHIPEP_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006301">
        <property type="entry name" value="FlhA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001712">
        <property type="entry name" value="T3SS_FHIPEP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30161">
        <property type="entry name" value="PTHR30161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00771">
        <property type="entry name" value="FHIPEP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005419">
        <property type="entry name" value="FlhA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00949">
        <property type="entry name" value="TYPE3IMAPROT"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01398">
        <property type="entry name" value="FlhA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00994">
        <property type="entry name" value="FHIPEP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="7" id="KW-1006">Bacterial flagellum protein export</keyword>
    <keyword evidence="3 7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0966">Cell projection</keyword>
    <keyword evidence="8" id="KW-0969">Cilium</keyword>
    <keyword evidence="8" id="KW-0282">Flagellum</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="63"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="95"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="190"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="232"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="271"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU364093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="688" mass="72078" checksum="0E982FBD00060D4B" modified="2016-01-20" version="1">MPKSLTKLGVPLGIVLIVVMLVVPLPAVLLDLLIAMNITGALLVLMVAMFIHKPLEFAAFPSVILVMTLFRLALNVSATRLVLLDGYAGKVIDTFGHFVVGGSLIVGLIVFSILLVIQFVVITNGAGRVAEVGARFTLDAMPGKQMAIDADLNSGLIDEEEARRRRAEVHAEADFHGAMDGASKFVKGDAIAAIVITLVNLLGGFAIGVAQYGMPFGDAINTYSLLSIGDGLVSQVPALLLSVATGLIVTRSVADSDMGSDIVGQIFARKMPLRVAGFGALALCIIPGLPKLPFLVAGGVMLVAASRIDDEVAAATAADQAGTAGELAVSPDSPEALVAEIRVDPLGLELSADLIDLVDTRTGGDLLDRVKALRRKVAGELGIVIPPVRTRDNLELPPNTYAITLFGAEVARGEAPRGTVLAIGDFLGSLPGTPTQEPVFGLEAKWIPAELRHQAEIGGATVVDRASVVTTHLSEVVHQHASRLLGREDVRLLTDIVKRSHPVVIEELTPVQLPLGEVQRVLRSLLEERIPIRDLVSIFEALSVRAATSKDHDGLVEAARAALEPSLASPYVVDGALHAISLEPLLEQQMLEGLRPTDQGAVIILDPDLAQRVLLGLVQAAQAAENGGVRPVLVCAPQIRSAVRRLVAPAVDRLPVLAYSELGAAREVRSVGVVGAGGVHPALAAAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Y4</accession>
    <name>A0A0Q8V9Y4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54060">
        <property type="protein sequence ID" value="KRC54060"/>
        <property type="gene ID" value="ASE19_08330"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="21"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="171" mass="18053" checksum="C21F19F1D2B5EC2D" modified="2016-01-20" version="1">MSRRYCADMSSAATPELRGVWSVRLAEERDARAVAALAREFADANPSASASAGSDLARATEAAESVIANGGVEVLVAESDGGVGGVLTMVDMPSLVHGGRVSTFIDLLVVSNGVRRRGVGTTLVQVALERARARGAYKVSLYFHDRNDPARQLYASMGLRPTGEAHAMYLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAE3</accession>
    <name>A0A0Q8VAE3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08345</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FPP/GGPP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895495.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54063">
        <property type="protein sequence ID" value="KRC54063"/>
        <property type="gene ID" value="ASE19_08345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000092">
        <property type="entry name" value="Polyprenyl_synt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00348">
        <property type="entry name" value="polyprenyl_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="SSF48576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU004466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="363" mass="39803" checksum="2387266430510F9A" modified="2016-01-20" version="1">MNETAESGPASRWVAAQLQAFEASYRTTVRPGVDGAFGIGTSRAFGRLLRYLTEPVVWTLDQRESFFRSGFALAAADASRSAAVGPLLGATVELGWSCALVVDDLIDGGNLRDNHRCAHSEYGRVRTLVAAGSTLALMVPVLTVRMPLTWHRRGQLVRWGLLATGQALASAVPRRRWTLASYSKVGGYSNSAALWAIVAPVAGDVPDDVLRELYSCAALMCANGKLRNDLLDYTGGSTDHGDELADFASRRVTFPVLLCLEQVMDPVDRESLEAHFNLRPGAPMSLAEGIDLLERYRTFERSAEHLVANGEEAARRIRRLRARWPEGQPLLDLLHDWALAWPQAAVEQLALLPDRDAPGQDWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAJ6</accession>
    <name>A0A0Q8VAJ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08490</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54216">
        <property type="protein sequence ID" value="KRC54216"/>
        <property type="gene ID" value="ASE19_08490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="373600at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007383">
        <property type="entry name" value="DUF445"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04286">
        <property type="entry name" value="DUF445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="193"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="220"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="389"/>
            <end position="407"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="46386" checksum="131499AAD5AEB14F" modified="2016-01-20" version="1">MIPLVQSWPEIRADLAEHWYVYASMPVIAAVIGYVTKIVAIEMLYRPMRHVGIGPFGWQGLVPRRAGKVAAVTIRLLTDNLLRAEDLLARIDGADAVRELRVPLSRAVDEIAREVVDQVTPGGWNALPESVRRLVRSRVQQEAPGIVDRLLAEIRADVDQFVDLHYLTVTTLVRNKHRLNDMMRRTAGSSMLFLRRTGLVFGFGIGLVQVVAWALWHNVWIMPVFGFVTGFVSDWVALTLLFRPQAPRRILGRRFHGVLHASRDQITRDYARIMAADLFQPSALLEAVLTGGGSDRLFALVHGEVDDVLARTLGPTRVLVALGIGTARYEQAKATVARRVLALLPEMPEVEDYAARVLDVENVLAEKMAELTTEQFEGIMRPIFKDDEWLMISVGAVLGFLVGELQVEIVTHLGGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAS1</accession>
    <name>A0A0Q8VAS1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">L-ribulose-5-phosphate 4-epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11245</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894902.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52969">
        <property type="protein sequence ID" value="KRC52969"/>
        <property type="gene ID" value="ASE19_11245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="599627at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.225.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001303">
        <property type="entry name" value="Aldolase_II/adducin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036409">
        <property type="entry name" value="Aldolase_II/adducin_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00596">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01007">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53639">
        <property type="entry name" value="SSF53639"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldolase_II" evidence="1">
        <location>
            <begin position="16"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="24057" checksum="A4801846251854F6" modified="2016-01-20" version="1">MSVVADVDQTIRRVRREVAALHAELPKYGLVVWTAGNVSARVPGQDLLVIKPSGVSYDDLTPENMVVCDLDGRVVEGEHAPSSDTEAQAYVYRHLPEVGGVVHTHSPYAVAWAARGEAIPCVTTMCADEFGGEIPVGPFAIIGDDSIGRGIVETLGESRSPAVLMQNHGVFTVGPTAKAAVKAAVMCEDVARSVHLSRQLGQPIPIAQPSVDALYDRYQNVYGQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAT1</accession>
    <name>A0A0Q8VAT1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08305</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54212">
        <property type="protein sequence ID" value="KRC54212"/>
        <property type="gene ID" value="ASE19_08305"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1550">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032025">
        <property type="entry name" value="DUF5063"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038312">
        <property type="entry name" value="DUF5063_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16702">
        <property type="entry name" value="DUF5063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="195" mass="21035" checksum="CD66C992523DF8C0" modified="2016-01-20" version="1">MAVETETVRLADDIAASVRSFLDGLRVVAAEATGGQAVSLLLLQISQIALTGARLGVHRDFAPRDEYQPDDGPDPDDIDELRLQLATLLGDLDTYSYVFDPYQPEVVEGLLSDDLTSIAADLAVGVRHYEAGDVEEALWWWQFSYVSSWGALAGSAMKALLSVVAHDRLDVDLDTTQELALVEVASAVLDSAENA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC36</accession>
    <name>A0A0Q8VC36_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04400</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54728">
        <property type="protein sequence ID" value="KRC54728"/>
        <property type="gene ID" value="ASE19_04400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1989068at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="135" mass="14947" checksum="19A7378BA8C9C238" modified="2016-01-20" version="1">MNVRHIYALGVTGADLLSEQVGIDDEYRSSRRMGTFAAEHHIGFFAELHERDLFSVHPVWIDRSERAAHVLVFVLNQTTRALSSILELVVVNVDLESRSAVALPPDVAAQIDRGIAVSRSISWPLPTSGAMSVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCD8</accession>
    <name>A0A0Q8VCD8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04670</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894308.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54774">
        <property type="protein sequence ID" value="KRC54774"/>
        <property type="gene ID" value="ASE19_04670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2059690at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359920" evidence="1">
        <location>
            <begin position="24"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="119" mass="12585" checksum="DA24B9D7F493398E" modified="2016-01-20" version="1">MRLRAVGAVLTGVALLTTVTACGGDEKSGSDDKVVTIDITIKDGKVTPSGDRVDVKVDQGVDLVVTADEPGELHIHSEPEQQLDYDAGTTTLPISINRPGVVAVESHELDQVIVQLEVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCF5</accession>
    <name>A0A0Q8VCF5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Translocase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_05085</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894241.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54840">
        <property type="protein sequence ID" value="KRC54840"/>
        <property type="gene ID" value="ASE19_05085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2073616at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008320">
        <property type="term" value="F:protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043953">
        <property type="term" value="P:protein transport by the Tat complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003369">
        <property type="entry name" value="TatA/B/E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018448">
        <property type="entry name" value="TatB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02416">
        <property type="entry name" value="TatA_B_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01410">
        <property type="entry name" value="tatB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0653">Protein transport</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0811">Translocation</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="91"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="115" mass="12689" checksum="CE2A72E0A9FE8B89" modified="2016-01-20" version="1">MFGIGFGELTVIVVLAVLVFGPDKLPDLARQAGRFMRQLRGFANQARDELRSELGPEFADLELADLDPRAIVRKHIAEAMAELDDLDDAARAEESRHVQEPLAAGEWAPYDVDAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCW0</accession>
    <name>A0A0Q8VCW0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">30S ribosomal protein S5</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpsE</name>
        <name evidence="12" type="ORF">ASE19_06500</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.</text>
    </comment>
    <comment type="function">
        <text evidence="7">With S4 and S12 plays an important role in translational accuracy.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 30S ribosomal subunit. Contacts proteins S4 and S8.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 9">Belongs to the universal ribosomal protein uS5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894484.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55077">
        <property type="protein sequence ID" value="KRC55077"/>
        <property type="gene ID" value="ASE19_06500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1505038at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01307_B">
        <property type="entry name" value="Ribosomal_S5_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000851">
        <property type="entry name" value="Ribosomal_S5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005712">
        <property type="entry name" value="Ribosomal_S5_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005324">
        <property type="entry name" value="Ribosomal_S5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013810">
        <property type="entry name" value="Ribosomal_S5_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018192">
        <property type="entry name" value="Ribosomal_S5_N_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13718">
        <property type="entry name" value="PTHR13718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00333">
        <property type="entry name" value="Ribosomal_S5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03719">
        <property type="entry name" value="Ribosomal_S5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01021">
        <property type="entry name" value="rpsE_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00585">
        <property type="entry name" value="RIBOSOMAL_S5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50881">
        <property type="entry name" value="S5_DSRBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="S5 DRBM" evidence="11">
        <location>
            <begin position="32"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="13"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016778"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC55077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="214" mass="21691" checksum="460D28D7650E8767" modified="2016-01-20" version="1">MSGPQRGQRSGGDRGGRGGRDGGRGGAEKSQYVERVVAINRVAKVVKGGRRFSFTALVIVGDGDGLVGVGYGKAKEVPAAIAKGVEEAKKNFFRVPRIQGTIPHPVTGEKAAGVVFLRPAAPGTGVIAGGPVRAVLECAGIHDVLSKSLGSSNQINIVHATVEALRMLEMPETVAARRGLPVEHVAPAALLKAQAEGEAAAVAAKAAAPAAVNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD26</accession>
    <name>A0A0Q8VD26_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14785</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896915.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53587">
        <property type="protein sequence ID" value="KRC53587"/>
        <property type="gene ID" value="ASE19_14785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="8"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="194" mass="21298" checksum="A78EB13A9C3FBA61" modified="2016-01-20" version="1">MTSHRHNHDPRDGYLDAARECILDVGWRRTTLTEVARRAGVSRMTIYRAWSDMPALLADLMTREWTGLVTGQVDLSGEPTPVRVADAMTGCVEALRDNELFTRIVELDPELILPYLLARRGRSQELVIGVLAAAVTEGQRLGTVRDGNAVTIARGLVLAAHGFVLSAHTMLDDAVDTAALDAELHHLIVRSLQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD75</accession>
    <name>A0A0Q8VD75_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06680</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55112">
        <property type="protein sequence ID" value="KRC55112"/>
        <property type="gene ID" value="ASE19_06680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1632510at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="13"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="344" mass="37548" checksum="26A73219FA0A10B6" modified="2016-01-20" version="1">MLAVVVAGLTACDDGQKADPEPSSNATAGESDLRPLGEPIDVGGLRVRVTVKEVGSDKDGPWVTTTMRVKNVGQKRIALPMLGLDCAEPMTSGYATGPSSLIAPGRSKTVEVPLYVRGMSDDYYAPVQPCGASGSISMLVSSGQPDYTMSESDGWRLDPDSLSDLNALLPFTPPGGEPKDPDRPYAWTEGEYAPEAYQVVSIPGMTYEQAIRILDPVRGSPTWDDYDRVIVAEHERGVVLFTYGYLPDRYVRALSREGVAASFASSINADTHILVARRGRVVRSFEPMLGQDFKKSKPLPEEKGLDLEYDTWPASWTLLERITGIHITEEWLLGADHPGFRLRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDZ0</accession>
    <name>A0A0Q8VDZ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10730</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894809.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52877">
        <property type="protein sequence ID" value="KRC52877"/>
        <property type="gene ID" value="ASE19_10730"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012156">
        <property type="entry name" value="Cold_shock_CspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010718">
        <property type="entry name" value="DUF1294"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06961">
        <property type="entry name" value="DUF1294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002599">
        <property type="entry name" value="Cold_shock_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="99" mass="10843" checksum="7A777CB5737B82F4" modified="2016-01-20" version="1">MVIERGDVLLALATASVVLSLVALFLYRADKRAAQRGTWRTRESTLHLVALLGGWPGALVGRRLFRHKTRKQPFVTILWLTVVAHCAGAVSLLVAARPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF24</accession>
    <name>A0A0Q8VF24_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Enoyl-CoA hydratase</fullName>
            <ecNumber evidence="4">4.2.1.17</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_08830</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; fatty acid beta-oxidation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.17" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895579.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54147">
        <property type="protein sequence ID" value="KRC54147"/>
        <property type="gene ID" value="ASE19_08830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275789at2"/>
    <dbReference type="UniPathway" id="UPA00659"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004300">
        <property type="term" value="F:enoyl-CoA hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006635">
        <property type="term" value="P:fatty acid beta-oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045002">
        <property type="entry name" value="Ech1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43149">
        <property type="entry name" value="PTHR43149"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="272" mass="28413" checksum="FC56A448336CC2F3" modified="2016-01-20" version="1">MSDEKRFTLTRDGHVATVELAGPGGKAVMDERFFAELAETFTALDADADVRAIVVTGAGPHFSFGLDLAGAAATFVPMRTATHAGARQELLALIRRWQAALDVVAGVRKPTVAAVTGWCIGGGVDLAVACDVRIASADAQFSVREAKVGIVADLGSLQRLVGVIGDGHLRELALTGDDIAADRAAAVGLVNHVHADAPAALAAAQDLAARMAANSPLVLRGVKDVLDAERGPRVEAGLRYTAVWNAAFLLSNDLDEAITSFVERRPPEFTGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFR3</accession>
    <name>A0A0Q8VFR3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_13685</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897110.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53392">
        <property type="protein sequence ID" value="KRC53392"/>
        <property type="gene ID" value="ASE19_13685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="149255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="167"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="190"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="224"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="266"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="294"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="357"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="500"/>
            <end position="517"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="524"/>
            <end position="545"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="557"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="597"/>
            <end position="622"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="628"/>
            <end position="658"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="7">
        <location>
            <begin position="202"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="7">
        <location>
            <begin position="525"/>
            <end position="655"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="675" mass="69867" checksum="4BB30EF941FC824D" modified="2016-01-20" version="1">MPASLLPIVRPRVAWLVALAPLLLAVLAIGLLGEGERAQQPTDSLPRGLDSTLAAQLDAQLGDDEQDVAIVLFTADDAGPMTADALAPAVRAAGGVPQSLTIAPDGGAAFAVVPVTAASATDTVDKVDALRTTLADAVPEGVRAQVTGPAGIQADLAKVFDGANTRLLLATAAVVAVLLVLTYRSPVLWLVPLLVVGVADRLAAILATQAMAALDVAWNESTVGILSVLVFGAGTNYALLLISRYRDELGRHESRHEAMSLALRRTAEPVLASATTVVLGLLTLLLSLTPSTRGIGLACAVGIVVAASFVLAVLPALLVLFGRWVFWPRAPRVGTTPLAERTSLWHRVGGVVRRRPGVLVAATTAVLAVLAVGLLRVETGLGRADQFLDEPEAISAGERLAESFPAGTSSPTEVLTRADAADVLATVEQTPGVVSAQVAGEGGGVSRIDVVLDATPGSAAARACLEDLRSALEEYDDTHVAGEEAEALDERDGAARDRKVVLPLILAVVLLALLLLLRSLVAPVLLVATVLATYAASMGASWWLFTGPLGFAALDVQVPLFAFLFLVALGVDYNIFLVTRAREEAREHGTRDGMLRALAATGGVITSAGVLLGAVFAVLGVLPLVVLAQLGVVVCLGVLLDTLVVRTVLVPALAVLLGDRFWWPSSSRRQAGTAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG46</accession>
    <name>A0A0Q8VG46_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14115</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917974.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53469">
        <property type="protein sequence ID" value="KRC53469"/>
        <property type="gene ID" value="ASE19_14115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0349">Heme</keyword>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="21"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="468" mass="51812" checksum="57FA25A54B2D47BE" modified="2016-01-20" version="1">MVPWHARPATGGELAPAVPVPSEAGPLPPGSTGRPAPASGHPSRLRQSLRITADLGREFFAGAELGDAFSFASLLDPKPVVVTQHPDHVRSLFTADPEMVPSLAGESPVRPVVGLSVLTAIGAQHRRRRKLMMPSFHGEAIARYREEIRDATARHLDRWQTGTAFPLAATTQAITLDVIMSGVFGIDHRADPAEARLRHVMKRTLALSVSPVARFGELLNLDREESIGPQKWVIRRLDNAMYDVIRRRRETHEPGARHDILSLLLDVHDEDGRPLTDLELRNELLTLVLAGHETTANSIAWTFERLLRNPRTYGVLREVVRSGEDPDGYLEATITESLRVRPVVPLIGRRVQVPWQLGEVVVPPGSRLLIGIVLVHHRADLYPDPFRFAPERFVGRRPGTHEWLPFGGGTRRCLGAALALEELRIVVAEIARRTDLVADDPAPERPISRNVTMIPGRGGRVRATSIRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH73</accession>
    <name>A0A0Q8VH73_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_02030</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the bacterial solute-binding protein 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892652.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56635">
        <property type="protein sequence ID" value="KRC56635"/>
        <property type="gene ID" value="ASE19_02030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="847343at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018313">
        <property type="entry name" value="SBP_3_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01039">
        <property type="entry name" value="SBP_BACTERIAL_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360032" evidence="4">
        <location>
            <begin position="25"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="5">
        <location>
            <begin position="41"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="262" mass="27873" checksum="AB5EF434182A609E" modified="2016-01-20" version="1">MNKLRLPVLAVVAVASLSLSACGSDDGGTTKSGANLVKDGTLSVCSDIPYAPFEDIDESTPTGYKGFDIDIVSEIAERLDLKIAIQDSAFDPLQNGQALNSGQCDLAASAMTITDDRKKALAFSDGYYDSKQSLLVPADSDIAGIGDLDGVKVGVQKATTGETYTTQNAKGAEVVVLPGDPEMFQALKAGQVDALLQDLPVNLVHTTDGAYKIVETYDTDEQYGLAMAKTNTALVDDVNEALADMREDGTYDEIYNKYFEVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHN7</accession>
    <name>A0A0Q8VHN7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RcpC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02665</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56742">
        <property type="protein sequence ID" value="KRC56742"/>
        <property type="gene ID" value="ASE19_02665"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017592">
        <property type="entry name" value="Pilus_assmbl_Flp-typ_CpaB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031571">
        <property type="entry name" value="RcpC_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16976">
        <property type="entry name" value="RcpC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03177">
        <property type="entry name" value="pilus_cpaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360045" description="RcpC domain-containing protein" evidence="1">
        <location>
            <begin position="22"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="domain" description="RcpC" evidence="2">
        <location>
            <begin position="114"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="240" mass="25304" checksum="D983B99377DF5936" modified="2016-01-20" version="1">MLLVVAAVIAAVGVALVFAYARSADTRAADKYDTVEVLTASKDIEPGESLDDALENGKVQLTHVAKAQLLEGASDDSDPLRDKVALTTVYAGEQLIPAKFGALEDVEARATLPIPEGKLAISILVKDDGRVGRFTKAGAEVSIISTLLDDSQHPILTRVLLDRVTVLADGTQTVDPEDGTDGGDNVTDTELQRLVTVAVTQKQAEKVRFAEKSGELTIALLNDASNVKGGPPVNADNLFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHW9</accession>
    <name>A0A0Q8VHW9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Protein meaA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_03155</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(R)-methylmalonyl-CoA = succinyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:22888"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:57326"/>
            <dbReference type="EC" id="5.4.99.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>adenosylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Metabolic intermediate metabolism; propanoyl-CoA degradation; succinyl-CoA from propanoyl-CoA: step 3/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Heterodimer of an alpha and a beta chain.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57048">
        <property type="protein sequence ID" value="KRC57048"/>
        <property type="gene ID" value="ASE19_03155"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00945">
        <property type="reaction ID" value="UER00910"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004494">
        <property type="term" value="F:methylmalonyl-CoA mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006159">
        <property type="entry name" value="Acid_CoA_mut_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016176">
        <property type="entry name" value="Cbl-dep_enz_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006099">
        <property type="entry name" value="MeMalonylCoA_mutase_a/b_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006098">
        <property type="entry name" value="MMCoA_mutase_a_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01642">
        <property type="entry name" value="MM_CoA_mutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51703">
        <property type="entry name" value="SSF51703"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00640">
        <property type="entry name" value="acid_CoA_mut_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00641">
        <property type="entry name" value="acid_CoA_mut_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0846">Cobalamin</keyword>
    <keyword evidence="8" id="KW-0170">Cobalt</keyword>
    <keyword evidence="7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="9">
        <location>
            <begin position="523"/>
            <end position="652"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC57048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="656" mass="70335" checksum="4EC08966E56E68D8" modified="2016-01-20" version="1">MRTYAGHSTAEASNALYRTNLAKGQTGLSVAFDLPTQTGYDPDSPLSRGEVGKVGVPVPHLGEMRKLFKDIPLTEMNTSMTINATAMWLLAMYQVAAEEQNPDLSPSEVAHKLAGTTQNDIIKEYLSRGTYVFPPEHSLRLIGDMIAYTVHEIPKWNPINICSYHLQEAGATPVQEIAYAMCTAIAVLDQVKNSGQVSDDDFEKVVGRISFFVNAGVRFVEEMCKMRAFVELWDEITRERYGVTDEKMRRFRYGVQVNSLGLTEAQPENNVQRIVLEMLAVTLSKNARARAVQLPAWNEALGLPRPWDQQWSLRLQQVLAFESDLLEYEDIFDGSPVVKAKVDELVAGAKAEIDRVQAMGGAIAAVDSGYMKQELVSSHARRRAAIEAGDEIIVGVNKFDTTEPSPLTADLDGAIMVADPEAEKAALASVEAWKAQRDQAEVDAALARLAEDAKTGTNLVAATLAAARAGATTGEWAGVLREVFGEFRAPTGVAGAVGVAEAGAELTAVREAVRTTGEELGGRLRLLVGKPGLDGHSNGAEQVAVRARDAGFEVIYQGIRLTPEQIVAAAVAEDVHCVGLSILSGSHMELVPAVLDGLKAAGMGDVPVIVGGIIPDSDGKALMDLGVAAVYTPKDFGLTEIMGGIVQVIRKANGLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIH1</accession>
    <name>A0A0Q8VIH1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cyclopropane-fatty-acyl-phospholipid synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12965</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CFA/CMAS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895846.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53666">
        <property type="protein sequence ID" value="KRC53666"/>
        <property type="gene ID" value="ASE19_12965"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003333">
        <property type="entry name" value="Mycolic_cyclopropane_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003085">
        <property type="entry name" value="CMAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="431" mass="46692" checksum="3A5BD4AA7A41FFFA" modified="2016-01-20" version="1">MHHRPSAAPADGGVAARLEGALRPFVGGSLPVRLVAWDGSQAGPDLAPVVELRSPDALRRLLWHPGELGAAQAYVAGELDVPGDLDAALTHAFAVAAERGLSGRRPGLRALTGAVRAAFGLDLVGRPPAPPATQARIRGRLHSKDRDRQSISHHYDTTADFYAQILDPETMAYSCGYHSSPEQPLAEAQHAKLDLVGRKLGLKPGMRLLDVGCGWGSLSLHAAEQFGARVTGVTISKEQKQFAEAAARRRGLSDLVEFRLCDYRDAVPLRGAEYDAVASLEMGEHVGQANYPTYAQVLHDSVRPGGRVLVQQMSRTGRWPGGGPFIESFIAPDMHMRPVGETVGLLEASGLEARDVHALREHYVLTVAGWLERFEANIDAITALVGEELVRVWRLYLVGGSMAFRDGRMGVDQILLVRPGGDHHLPWTRSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIN9</accession>
    <name>A0A0Q8VIN9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DNA topoisomerase 1</fullName>
            <ecNumber evidence="8">5.6.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">DNA topoisomerase I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">topA</name>
        <name evidence="11" type="ORF">ASE19_23895</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP-independent breakage of single-stranded DNA, followed by passage and rejoining.</text>
            <dbReference type="EC" id="5.6.2.1"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the type IA topoisomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.1" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894002.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57368">
        <property type="protein sequence ID" value="KRC57368"/>
        <property type="gene ID" value="ASE19_23895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="223233at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003917">
        <property type="term" value="F:DNA topoisomerase type I (single strand cut, ATP-independent) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00186">
        <property type="entry name" value="TOP1Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03363">
        <property type="entry name" value="TOPRIM_TopoIA_TopoI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00952">
        <property type="entry name" value="Topoisom_1_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000380">
        <property type="entry name" value="Topo_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003601">
        <property type="entry name" value="Topo_IA_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023406">
        <property type="entry name" value="Topo_IA_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013497">
        <property type="entry name" value="Topo_IA_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013824">
        <property type="entry name" value="Topo_IA_cen_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013825">
        <property type="entry name" value="Topo_IA_cen_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013826">
        <property type="entry name" value="Topo_IA_cen_sub3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023405">
        <property type="entry name" value="Topo_IA_core_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003602">
        <property type="entry name" value="Topo_IA_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005733">
        <property type="entry name" value="TopoI_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028612">
        <property type="entry name" value="Topoisom_1_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025589">
        <property type="entry name" value="Toprim_C_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034149">
        <property type="entry name" value="TOPRIM_TopoI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42785">
        <property type="entry name" value="PTHR42785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01131">
        <property type="entry name" value="Topoisom_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01751">
        <property type="entry name" value="Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13368">
        <property type="entry name" value="Toprim_C_rpt"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00417">
        <property type="entry name" value="PRTPISMRASEI"/>
    </dbReference>
    <dbReference type="SMART" id="SM00437">
        <property type="entry name" value="TOP1Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00436">
        <property type="entry name" value="TOP1Bc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56712">
        <property type="entry name" value="SSF56712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01051">
        <property type="entry name" value="topA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00396">
        <property type="entry name" value="TOPOISOMERASE_I_PROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7 8 11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="Toprim" evidence="10">
        <location>
            <begin position="3"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="region of interest" description="Interaction with DNA" evidence="8">
        <location>
            <begin position="177"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="857"/>
            <end position="905"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="864"/>
            <end position="905"/>
        </location>
    </feature>
    <feature type="active site" description="O-(5'-phospho-DNA)-tyrosine intermediate" evidence="8">
        <location>
            <position position="325"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="8">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="8">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="8">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="8">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="8">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="8">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="8">
        <location>
            <position position="327"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="8">
        <location>
            <position position="525"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC57368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="905" mass="98534" checksum="2F3B82480E99D3EC" modified="2016-01-20" version="1">MAHKLVIVESPAKARTIGGYLGSGYVVESSIGHIRDLPNNAADTPAKIKDKPWGRLAIDVENGFEPYYVVPRDKKSHISKLKQLLKDADELYLATDEDREGEAIAWHLLDELKPKGIPVHRMVFHEITKAAIQEAAANPRELDMDLVEAQETRRLLDRLYGYEVSPVLWRKVMSGLSAGRVQSVATRLVVDREKERMAFRAASYWDLEGTFDAGSGHDQRMFPAKLHTIDGTRVASGSNFGQDGQLKAKSDVVHLDQRRAEALVSALSDTSYDVRSVEAKPYRRSPYAPFRTTTLQQEASRKLGMSASVTMSVAQRLYENGFITYMRTDSTTLSGSAIGAARAQVQELYGAEYLPDAPRTYASKVKNAQEAHEAIRPAGDSFRTPAQTGLTGDQFRLYELIWQRTVASQMKDAVGQSVTIRLGGSAATGEDVVFSASGRVITFHGFLKAYVEGTDDSAAAKDDQETRLPNLQQGDPVQAASLTANGHETKPPARYTEATLIKELEDREIGRPSTYASIIGTILNRGYVYKKGTALVPAWIAFSVVRLLTEHFTRLIDYDFTAGMETVLDDIARGDKSRVAELTEFYYGSDRLAGLQRLVTELGDIDAKELATFPVTGPDGAESGIDLRVGKYGPYLEGPDDGSGTRVRANVPDDLPPDELTVDKAKELLANPAGEEIDLGVHPESGLQVVAKNGRFGPYVTEVLPEDAPKSAKPRTGSLFKSMSLDTITLDDAVKLISLPRIVGAGEDGEEITAQNGRYGPYLKKGTDSRSLTSEDQIFGITLDEALKIYSQPKQRGRAAAAPPLKELGNDPVSGQPVVVKAGRFGEYVTDGEYNATLRKDDSVESITIERAAELLAERRAKGPAKKTAKKGAKKAPAKKAAAKKTTAKKAPAKKTAAKKAAKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK67</accession>
    <name>A0A0Q8VK67_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04260</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894379.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54701">
        <property type="protein sequence ID" value="KRC54701"/>
        <property type="gene ID" value="ASE19_04260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="452986at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="467" mass="51583" checksum="5DF7021F9880A96D" modified="2016-01-20" version="1">MKLETDYLVVGAGASGMAFVDALVDQSSADVIMVDRRHRPGGHWHDAYPFVRLHQPAACYGVSSTDLGADRIDARGNNAGMYELSSAAEICSYFAEVMERVLLPSGRVRFMPMSEYRTTATGEHVVTSLLNGEEVEIVVRRKIVDATYIEPTIPSTHKPAFDVDPGVRVIPPNDLVKVRTTSAGFTILGAGKTAMDTCTWLLEKGVDKESITWIRSRDVWSINRSWTQPLDLVESRARFSAAWLEAAAVAATGTEMALKLEEMGVFLRLDRDVVPSAFRGATISESEIESLRSITNVVRAGRVTRVREDGVDMVDGTINLPRDQVFVDCTASGLRTLEVRRVFEPDRITLQYVTPGYACWSAATLAVIEANVQDDDDKEYLALPVVYTGDVKDLLSFSRDQMVSARRRGEVAAIRAWSGATRLNPSRGLRERVADPQVKAALDAAREWMEPAMRNVEERVGPVEQLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKL6</accession>
    <name>A0A0Q8VKL6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05025</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894252.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54829">
        <property type="protein sequence ID" value="KRC54829"/>
        <property type="gene ID" value="ASE19_05025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="191889at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="5"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="124"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="221"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="316"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="345"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="374"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="396"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="423"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="691"/>
            <end position="714"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="732" mass="78634" checksum="B724075F8B18782C" modified="2016-01-20" version="1">MIKRLAWPSAVVIVTTLCGLIPLLGSRDVYLRGDSAAQFAPTWWYFGTTVRDSGLPIGMDPNAFAGGNYPAEALFGIWNPVNMLIWLVVSGFGSLLVSVVLVKVAIMVMIALGAYLVAREYDAAPWAAAAVATALPFSGFTLWWDAGSWPAGLAAFAYAPWVWWAFRRTLRGAMNPWWAFVVGALAITQGNPYGTLAVVIVGGGLVVEGLVTRNLPGVRRLVLTGGCVAALLPLVYLPLVRASELAARADGPMFGNNGKLRPELGDLLGMSSPTFVPSIISITGPTQVPVAYFCWFVLPLLPWLQYRVLRERSRELTGIGVIGLVYLAATLGPSNLWLFRWPLRLIEYSYLALGVALAVVLSKGLARDRWRARSIGTGAIVAALAFQTWAEHPTRVVASVAGIGLLAALSAALVVVHRRSTTSTALVAAVLIGGTALTLGLQARVYEENNGARLYHVPTDVSALQERFGDLDGRVMQFADLRPLQEKAQRTGNDRKLRAAWDNFLPGSMYRVAGVDAVNNYTGMGFVPFEKTLCLHYEGFTRPCGYQRVWEPVTAGGPPLADLLKLQTMVVQPKQAIGVLRGPGWTQREDGKRIVLVRDAPLPWPDSELSWATPGVDVASAQRDGLSETVRLKAAEGGELTFARLAWPGYSATLDGKELEVGRDDAGLLTVAVPRGADGTVEVTYDRPGRAISTLGVGVGVLGALLLGAADVVVRRRRRAAAPQPQTADPLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLU5</accession>
    <name>A0A0Q8VLU5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04970</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55133">
        <property type="protein sequence ID" value="KRC55133"/>
        <property type="gene ID" value="ASE19_04970"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="13"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="201" mass="21768" checksum="47BFF866F0C65334" modified="2016-01-20" version="1">MSAKGTRLNRRGRETRKLLLREAVHCLAEGGPDAVSANAVARRAGATWGTIQHQFGDADGLWAAVLEHIAGQAGFAAIPVPTHPGITERVDAVVDLMWRAVQLPSAVAFYQLRAGLPHRREQLEEGFPRTAQAIARWDEEWAALCERSFAGLGIEAGKLMRVRHLLPGALRGLFAEGDLGGYVDVDEARIGLRDALTAYLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM72</accession>
    <name>A0A0Q8VM72_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02310</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Responsible for synthesis of pseudouridine from uracil.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a uridine in RNA = a pseudouridine in RNA</text>
            <dbReference type="Rhea" id="RHEA:48348"/>
            <dbReference type="Rhea" id="RHEA-COMP:12068"/>
            <dbReference type="Rhea" id="RHEA-COMP:12069"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RluA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892699.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56681">
        <property type="protein sequence ID" value="KRC56681"/>
        <property type="gene ID" value="ASE19_02310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1714699at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd02869">
        <property type="entry name" value="PseudoU_synth_RluA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006225">
        <property type="entry name" value="PsdUridine_synth_RluC/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006224">
        <property type="entry name" value="PsdUridine_synth_RluC/D_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00005">
        <property type="entry name" value="rluA_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01129">
        <property type="entry name" value="PSI_RLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="4">
        <location>
            <begin position="18"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR606225-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="311" mass="33969" checksum="99FBB8E25A3C1EB5" modified="2016-01-20" version="1">MTTVDHRSLNVPDSLEGERVDVVLAQLFGVSRTRAAELVADGRVQLDGSPVGGKSDRVFAGSVLDVEIPAEADPLEVVPEIVEGIKIIHDDDAIVVIDKPVGVAVHPSPGWRGPTVVGHLAGAGFRISTSGAKEREGIVQRLDVGTSGVMVIAKSEHAYSVLKNAFRQRTVDKTYHALVQGHPDPHEGTIDAPIGRHPRFDYKFAVMDDGRHSVTHYETLEAHRFASLLEVHLETGRTHQIRVHMSALKHPCVGDITYGADPVLARKVGIERQWLHAVKLGFEHPDGGYVEYESSYPDDLARALDIIRDSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMJ0</accession>
    <name>A0A0Q8VMJ0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glyceraldehyde-3-phosphate dehydrogenase</fullName>
            <ecNumber evidence="4">1.2.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_08485</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.-" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54215">
        <property type="protein sequence ID" value="KRC54215"/>
        <property type="gene ID" value="ASE19_08485"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004365">
        <property type="term" value="F:glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020831">
        <property type="entry name" value="GlycerAld/Erythrose_P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020830">
        <property type="entry name" value="GlycerAld_3-P_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020829">
        <property type="entry name" value="GlycerAld_3-P_DH_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020828">
        <property type="entry name" value="GlycerAld_3-P_DH_NAD(P)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006424">
        <property type="entry name" value="Glyceraldehyde-3-P_DH_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02800">
        <property type="entry name" value="Gp_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00044">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00078">
        <property type="entry name" value="G3PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00846">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01534">
        <property type="entry name" value="GAPDH-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00071">
        <property type="entry name" value="GAPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gp_dh_N" evidence="5">
        <location>
            <begin position="109"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU361160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="459" mass="49494" checksum="DE0DAD10375607A3" modified="2016-01-20" version="1">MIPIVGKLHREKDVTILLHSRSLVNKSVIDILKTHRYARQIDGVELSVADTFPFLETIAGLDLGAVKIDLALLIRAYRASGEGTAIPEFTAAALAEATGDNKIAGPGSQDVVLYGFGRIGRLVARLLVEKSGSGNGLRLRAVVVRKAKGDDLKKRASLLRRDSIHGAFNGSITVDEEKNQIIANGNVIQVIYSNSPEEIDYTEYGINDAILIDNTGIWRDREGLSQHLRPGIAKVLLTAPGKGDVPNIVHGVNHLTVDASEKVLSCASCTTNAIVPPLKAMEDAFGISRGHVETVHSFTNDQNLLDNFHKADRRGRSAPLNLVITETGAASAVAKVLPDLDAKITGNSIRVPTPDVSIAILSLQLKRETTREEVNEHLRQASLVGPLARNLDYTTATDAVSTDFIGARAASIVDGGASIVDGDSAILYVWYDNEFGYSCQVLRTVQYISGVEYRTFPTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMM6</accession>
    <name>A0A0Q8VMM6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02840</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the glycerate kinase type-1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892789.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56771">
        <property type="protein sequence ID" value="KRC56771"/>
        <property type="gene ID" value="ASE19_02840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1292731at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008887">
        <property type="term" value="F:glycerate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031388">
        <property type="term" value="P:organic acid phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1510.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018193">
        <property type="entry name" value="Glyc_kinase_flavodox-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004381">
        <property type="entry name" value="Glycerate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018197">
        <property type="entry name" value="Glycerate_kinase_RE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036129">
        <property type="entry name" value="Glycerate_kinase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21599">
        <property type="entry name" value="PTHR21599"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02595">
        <property type="entry name" value="Gly_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006078">
        <property type="entry name" value="GlxK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110738">
        <property type="entry name" value="SSF110738"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00045">
        <property type="entry name" value="TIGR00045"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR006078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="361" mass="36074" checksum="269C48D1534049CF" modified="2016-01-20" version="1">MRVLVAPDKFAGTLTAVEAAEAIAAGWRRQAPDDEVVLAPMSDGGPGFVDVLHATLGGELLAVVAEAPQGHEVPATILTVGDTTYIESAQACGSHLTGGKLGEFGTTVGVGQLLLEAVNSGSTRVVVGLGGSGTNDGGAGLLAALGADADVALDVGGIFLDGVTQVDLSIARGLVDGVEIIAATDVDSPLTGLFGASKTFGAQKGLDEEMQVAMDGYLEQWAAATDRRLSLEPGAGAAGGLGFALMLLGGRRVSGIELVAEAVGLARQAAAADLVITGEGAFDFSSRAGKVPAGVAAVAADALRPCVALAGQVLVGQREMRALGMDAAYSLVDAVGEQRAFQDPVGALGELAARVARTWSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN04</accession>
    <name>A0A0Q8VN04_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Coproporphyrin III ferrochelatase</fullName>
            <ecNumber evidence="7">4.99.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">cpfC</name>
        <name evidence="9" type="ORF">ASE19_22760</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in coproporphyrin-dependent heme b biosynthesis. Catalyzes the insertion of ferrous iron into coproporphyrin III to form Fe-coproporphyrin III.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>Fe-coproporphyrin III + 2 H(+) = coproporphyrin III + Fe(2+)</text>
            <dbReference type="Rhea" id="RHEA:49572"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:68438"/>
            <dbReference type="ChEBI" id="CHEBI:131725"/>
            <dbReference type="EC" id="4.99.1.9"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="6">
            <dbReference type="Rhea" id="RHEA:49574"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 7">Porphyrin-containing compound metabolism; protoheme biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7 8">Belongs to the ferrochelatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.99.1.9" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892595.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58888">
        <property type="protein sequence ID" value="KRC58888"/>
        <property type="gene ID" value="ASE19_22760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="780534at2"/>
    <dbReference type="UniPathway" id="UPA00252"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004325">
        <property type="term" value="F:ferrochelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006783">
        <property type="term" value="P:heme biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00419">
        <property type="entry name" value="Ferrochelatase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03411">
        <property type="entry name" value="Ferrochelatase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00323">
        <property type="entry name" value="Ferrochelatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001015">
        <property type="entry name" value="Ferrochelatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033644">
        <property type="entry name" value="Ferrochelatase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033659">
        <property type="entry name" value="Ferrochelatase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11108">
        <property type="entry name" value="PTHR11108"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00762">
        <property type="entry name" value="Ferrochelatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00109">
        <property type="entry name" value="hemH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 7" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="2 7" id="KW-0408">Iron</keyword>
    <keyword evidence="4 7" id="KW-0456">Lyase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 7" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>Fe-coproporphyrin III</name>
            <dbReference type="ChEBI" id="CHEBI:68438"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>Fe-coproporphyrin III</name>
            <dbReference type="ChEBI" id="CHEBI:68438"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC58888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="354" mass="37831" checksum="7EAE2CFB8CCD16A7" modified="2016-01-20" version="1">MPNPDPYDALLLLSFGGPEKPDDVVPFLENVTRGRGIPRERLEEVGQHYFLFGGKSPINDQNRALISALEADLAAAGVDLPVYWGNRNWAPYLDDTVAQLAADGRQRVLCIATSAYSSWSSCRQYWDNIDAALAALPEGTPAPRIDKVRAYFNHPGFVAANVDGVLDALADLPDEVRDAARLVFVTHSIPTAMSDESGPEGGAYVAQHLDVAAVVADAVRDATGVERPHELAFCSRSGSPRTPWLEPDVNDRLEELAAAGTTAVVLIPVGFVSDHMEVVYDLDTEALATAERLGIAARRAASAGTHPAFVAALRDLVVERAAAERGEQVERPACGTRGPSHDRCPAGCCLGSRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN91</accession>
    <name>A0A0Q8VN91_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Thiamine_BP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22865</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0045 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892576.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58908">
        <property type="protein sequence ID" value="KRC58908"/>
        <property type="gene ID" value="ASE19_22865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2054097at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029756">
        <property type="entry name" value="MTH1187/YkoF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002767">
        <property type="entry name" value="Thiamine_BP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01910">
        <property type="entry name" value="Thiamine_BP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89957">
        <property type="entry name" value="SSF89957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thiamine_BP" evidence="2">
        <location>
            <begin position="3"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="99" mass="10460" checksum="3EC299FBAA0E3F68" modified="2016-01-20" version="1">MLVAFSISPSVADDTGGVSEAVAAAVRVVRESGLPNETTSMFTTIEGEWDEVMAVVKRAVDVVAATSPRVGLVLKADIRPGFTGELTAKVERVERALEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN96</accession>
    <name>A0A0Q8VN96_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893012.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56995">
        <property type="protein sequence ID" value="KRC56995"/>
        <property type="gene ID" value="ASE19_04125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="152"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="194" mass="19527" checksum="68339AD2E6DA4146" modified="2016-01-20" version="1">MAGVLSPVRGGTRASSSADVDLVTRCVVASALVGSAVIHGTVAGEHFGEWVLAGAFFLAVQAVELVLALLAVRAWTRVAALVVVVTGVLTVATWLVSRTSGMPVGPADFRVPEPVGVPDVACGVLELMSVVAALVALPLLRPGSRRHPGPSRRGVAIATTAVWAAVVLTIWGSAPIVLGADGHSHGAEAGSPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNA1</accession>
    <name>A0A0Q8VNA1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05230</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894403.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55138">
        <property type="protein sequence ID" value="KRC55138"/>
        <property type="gene ID" value="ASE19_05230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="397852at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005662">
        <property type="entry name" value="GTP-bd_Era"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42698">
        <property type="entry name" value="PTHR42698"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="413"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="451"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="domain" description="G" evidence="2">
        <location>
            <begin position="57"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="522" mass="55074" checksum="A2BD9DD78AA6DC3D" modified="2016-01-20" version="1">MGDLATRGTPVGDRLSGLGDAVTAARGRVPDAILDEVAAAADRATGRLKLSARHTVVAIAGATGSGKSSTYNALTGLELSSVGIRRPTTSWATAVVWGSQGAEELLDWIGIPPRHQTMRDSMLDSRREDSSFDGVVLLDLPDHDSTEVAHHLEVDRLVAVADLMVWILDPQKYADAAVHDRYFKPLATHQGVMLVALNHIDTVPAERRQAMVDDVRRLLAEDGLPDVPVLAISAKEGIGMAELRAEIQRRVKDKHSTTARVEADIAAAAGRLEGAAGSTPARELPAQRYDDLEGRVADAAGISAVVDGIERTLGSRARSAVAWPPLLLAGRADPEVAALDAAPQVAPVDRATVDTSVRALADEASEGVGAGWAPTVRAAATGRLAEVADKLDRELGKVDLGGRLPFWLNLVRLLHWLLLIALVGGLGWWGYAAVRGTTDDLTQVAGFPLPAVLAVAGLVLGLVLAVVGRSLVGGLARTRAEEADERLRAVVHQVVEAEVTQPVSKELAAYAAFRRGIATARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNC5</accession>
    <name>A0A0Q8VNC5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23185</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC59000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893035.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59000">
        <property type="protein sequence ID" value="KRC59000"/>
        <property type="gene ID" value="ASE19_23185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1328358at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008535">
        <property type="entry name" value="DUF817"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05675">
        <property type="entry name" value="DUF817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009141">
        <property type="entry name" value="UCP009141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="160"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="197"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="236"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="271" mass="30243" checksum="362C3FE683A81C40" modified="2016-01-20" version="1">MGRGPVLTVRRLVTQLVRFGWLELQSCAFAIGVFAGLALAFVVPLPVARYDALLVWCVALTLGFWAVGLETWREVLVIVAFHALGLGLELFKVHVGSWVYPGDAVTKVGGVPLSSGFMYAAVGSYICQAWRRFDLRVSHYPPVPVTLVAIGIYANFFTHHWIVDLRVVLAVVGLWVLRRCQVHFTVGDARYRMPLSLSFLLIGFFLWLAENLATLLNAWRYPGQVEVWEVVHTSKLGAWALLVTMSFVLVATVKAQEGRLYHVPGEPHVTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP52</accession>
    <name>A0A0Q8VP52_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04225</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54695">
        <property type="protein sequence ID" value="KRC54695"/>
        <property type="gene ID" value="ASE19_04225"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="128"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="129"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="147" mass="15288" checksum="9A81CBBB277C1504" modified="2016-01-20" version="1">MRLAVAEVEVDGADDGEGAVAGRDREAFPDGMDHPRAAVEDAGERDSFDEGAAVEAFDDDVGDALVDGVEQRLKGADLTWVEDGVAVDALEAADGIGAFGGGESALAQVASDVAELLLDEGVNRPGFRGGSVTWNQPRSGRVFQRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ00</accession>
    <name>A0A0Q8VQ00_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00630</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59573">
        <property type="protein sequence ID" value="KRC59573"/>
        <property type="gene ID" value="ASE19_00630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="950128at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="412" mass="41789" checksum="A28C87425474375B" modified="2016-01-20" version="1">MGLVAVPSPAQAAPVEWSYAASTGGTYIKVLDGVVQSDLTAQSGVTGGAKSSSSKNSTLAAKVAGLAEVGAIETTTSATVNPTNTVLKSWARTAHVSLLNGLITADAVETNISTTGQKATGTGTYTASSRLAGIKIIGINLPLNIPKNYSVTVPGVANITLNYAINGKVDRVLGTMGWAIGVTLLKPFGSYSAGVTLLVNPVNQYLSEVDPSEGAGLFGTAYGTRVQADVGDTVSIVSDPTARVGTPVGSSNGKTLTNSTLSVKVPGLLTTGVVSSTTTSTKDAFGNAEITNTNQTAGVNLLGGLIKADAIKVTAYGKADEGKWTSKMELKLVNLVIAGQKIPIDVSPNTIINVANLGQVAINRQEVHPGGAWMNRIDAVRITLSTAQAGLPVGAVIEIGVASTAIAPPGTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ48</accession>
    <name>A0A0Q8VQ48_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00570</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59562">
        <property type="protein sequence ID" value="KRC59562"/>
        <property type="gene ID" value="ASE19_00570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1303718at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01547">
        <property type="entry name" value="SBP_bac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360262" evidence="1">
        <location>
            <begin position="32"/>
            <end position="444"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="444" mass="47401" checksum="905C7B180F292239" modified="2016-01-20" version="1">MIWTMTSRRGTRCRSLAVSIAGVLAAGGLAACGGSGKPVLNWYVNPDGVDVFQDYAKQCSTGDYDIEVQLLPTGATDQRTQLARRLAAEDSSTDLMNLDPVFVAEFANAGWLREVTGDLATEVEKSVDGSGNYLSGAADTVTWDDKVYAIPLWANTQLLWYRKSLAKAAGLDMTKPVTWDQVIDAAAQQGGTVGVQADKYEAYMVWINALIQGAGGDIVSDTEAGRDAKVDIDSDAGRKAAAVIEKLADKAAQPDLSVSREGTSLGQMYPAKGPGEFMVNWTFVYKNYAGLVGAPDGITEDQLADLGWARYPETVEGEPSKPPVGGIDIGVGAYSEHPDWAEEAARCITSEQAQVDLALKAGLMPSTNSAYDKVAASGEYPKDLVELFRTSVDEGGPRPKSAFYAMISGAIQSRWHSPTSVDPDSTPEESAKYLKDVLEGKALL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ49</accession>
    <name>A0A0Q8VQ49_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00345</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896816.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59524">
        <property type="protein sequence ID" value="KRC59524"/>
        <property type="gene ID" value="ASE19_00345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1196738at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="92"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="364" mass="38599" checksum="CA611750A607AE1A" modified="2016-01-20" version="1">MSRRGRVLGSVAGALGLAAGTAAVGVVRQQRQISRRAGESVPFGTLRAEPVSVVADDGVALHVEVDELDAPATTAVDRLLRRTHSGAPRVTVVFVHGYCLNLDCWHFQRAAYRGLVRAVYYDQRSHGRSGNSDRAHSTIEQLGHDLHAVLEAVVPDGPVVLVGHSMGGMSIIAFAELYPELIGTRVVGVGLVSTTAGGLDPGRMLLPMLPARLTGPLASSAMRTLHLGHRAIDVLRRAGSAVATVATDRFAFGEEVPQGYVEFVDEMLSATPFEVVADFFPNFAGLDKFDGVGALGAVPVSVICGTADKMTSIGHSRKLQSRIPGSRLLECEGAGHMVIMERHELVNAELDQLITAAAARAVHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQB7</accession>
    <name>A0A0Q8VQB7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00970</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59626">
        <property type="protein sequence ID" value="KRC59626"/>
        <property type="gene ID" value="ASE19_00970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="958012at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="31662" checksum="008068354DBA8ED6" modified="2016-01-20" version="1">MAYPALAVLMLISAPSDVPDEDLATVKRTVGQWNLSMGRASNVAVLPTSWSEHAVAEFGERPQAVLNDQLVDDADMALALFADRLGTPTGEADSGTLEEIDRLVEAGKPVCVLLNRAPRSLAGTAATQEKERLERAIEALYQRAIVLPYLNQAELVGHLNNMLSRAAGKVEGSADARAVPQASSESVGVWPHIVRETYQETDNRGNLKTRSRYFLELRNETGRPVLDVTHEIPGGESLRLGGEDSAIARMAPGQVARFGITLMMGSNTQGLTCTVTWRFPDGEPQHSSASLVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQN2</accession>
    <name>A0A0Q8VQN2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribose-phosphate pyrophosphokinase</fullName>
            <shortName evidence="2">RPPK</shortName>
            <ecNumber evidence="2">2.7.6.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">5-phospho-D-ribosyl alpha-1-diphosphate</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Phosphoribosyl diphosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Phosphoribosyl pyrophosphate synthase</fullName>
            <shortName evidence="2">P-Rib-PP synthase</shortName>
            <shortName evidence="2">PRPP synthase</shortName>
            <shortName evidence="2">PRPPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">prs</name>
        <name evidence="4" type="ORF">ASE19_00890</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + D-ribose 5-phosphate = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15609"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.6.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="2">Binds 2 Mg(2+) ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route I): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.6.1" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896730.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59611">
        <property type="protein sequence ID" value="KRC59611"/>
        <property type="gene ID" value="ASE19_00890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1011035at2"/>
    <dbReference type="UniPathway" id="UPA00087">
        <property type="reaction ID" value="UER00172"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004749">
        <property type="term" value="F:ribose phosphate diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006015">
        <property type="term" value="P:5-phosphoribose 1-diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009165">
        <property type="term" value="P:nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009156">
        <property type="term" value="P:ribonucleoside monophosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00583_B">
        <property type="entry name" value="RibP_PPkinase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029099">
        <property type="entry name" value="Pribosyltran_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005946">
        <property type="entry name" value="Rib-P_diPkinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037515">
        <property type="entry name" value="Rib-P_diPkinase_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10210">
        <property type="entry name" value="PTHR10210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14572">
        <property type="entry name" value="Pribosyl_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13793">
        <property type="entry name" value="Pribosyltran_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01251">
        <property type="entry name" value="ribP_PPkin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 2" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran_N" evidence="3">
        <location>
            <begin position="12"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="Ribose-5-phosphate binding" evidence="2">
        <location>
            <begin position="234"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="202"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="45"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="104"/>
            <end position="105"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="204"/>
        </location>
        <ligand>
            <name>D-ribose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="230"/>
        </location>
        <ligand>
            <name>D-ribose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="326" mass="35682" checksum="464420771FDF4D94" modified="2016-01-20" version="1">MSGLKKTTEKNLMVFSGRAHPELATEVAEILDQQLVPTDAREFANGEIYIRYEESVRGCDAFVIQSHTTPINEWIMEHLIMVDALKRASAKRITVVMPFWGYSRQDKKHRGREPISARLMADLFKTAGADRIITVDLHADQLQGFFDGPVDHLMALPLLTDYIKQKYGDQELAVVSPDAGRIKVAERWAARLGGAPLAFIHKTRRTDVANEVVANRVVGDVKGKICVLTDDMIDTGGTIVKAADALMAEGAAGVIIAATHAILSDPAVDRLKNSVATEVVITNTLPVPPEKQFDKLTTLSIAPLVARAIREVFEDGSVTSMFDGHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRT3</accession>
    <name>A0A0Q8VRT3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56754">
        <property type="protein sequence ID" value="KRC56754"/>
        <property type="gene ID" value="ASE19_02735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="190667at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="781" mass="81345" checksum="84E9F460DDB983A7" modified="2016-01-20" version="1">MVGGATLAVGPGSPPAVADVTSPAAGTALDLPSGVTVSGMSGDPASRAIADTLVDPIVGFNDFPSKGSSYLMLSSGNASQAFQGSASAQLSTDFGNDAAPDSSSISLTVAQGTAGAGCLFLDFALGTEEPTGYTAGVPDDELNIELNGVEYAVNAGDGYFTQNDPDTVKSPDWPVDAAATYYHVNQIEYWHQPGSRKDPEPGTAETPHLPAVTGLNNLTSLDTARIPLDLATSNAVITVTVRDAPGALNGDLDSVGFVDNVRLGASCANGSGVEPIAPDNQEPGNACCGIIRGTRGVGNTLTYDPVPSTTAIERYDSAQNGWRSPSGTPVGLRFRWYSTTTSYRYSGDMRHWTALPNADRQTYVPTPSDRARVLIVLVTGVVDGRRYETFPSTDAAPNWYVTTTIQNGTFLEGVAPVISGPEDGTASVGDTLTAQVGDTVPRQDTWDWQWYAKTPGQSGDGAAISGATGQTFVIGEAQAGKMMMVKATAKRDNFDSKTWPSAFYGPIDLQAWQQTPKPAIVHDGTPAVNEELSVATGAWNPVPASYSYQWKRDGVVISGAVYDKYTVKAADVGKGLTVDVSGVITGYPQLPQTSAAVTPAGGVLPGGTAAIIGTAKVGSKLTASLSGWPTGLTYTYSWYAGSTVLQSGTSRYYSLPASVLGKQITLKVTGTKSGFEPTVVASAPTAVVARGSLISGSVRMSGTLRVGYTLRAYVASWGPSPVVYRYRWKIGSSYVAGSAGTRSSLKLPSRARGKRITLEVAVSKTGYASVVKRVVSTSTVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VS81</accession>
    <name>A0A0Q8VS81_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HxlR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03680</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892931.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56914">
        <property type="protein sequence ID" value="KRC56914"/>
        <property type="gene ID" value="ASE19_03680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1919329at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="8"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="26345" checksum="A9D2DD8008899D6F" modified="2016-01-20" version="1">MPDYGNYCPVSMAAEVVADRWTPLIIRELVLGNTRFNDIARALPGISRSLLVQRLRHLEKRGVLEMWPAPTGRGSEYHLTPAGRDLERVIDSLGRWAIEWLFEELRPHDVAPTTLMWWMHRRVDHDRLPPGRTVIAFRHTAPDPVTIWLVMAPNEVSVCLQHPGFEVDVEVAGPTPVLADVFQGYSTWSEAVDAGRLEVAGPPRLVRALPRWFLWSPWAGVTRERADRVPAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VT68</accession>
    <name>A0A0Q8VT68_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23005</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892555.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58931">
        <property type="protein sequence ID" value="KRC58931"/>
        <property type="gene ID" value="ASE19_23005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="18"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="199" mass="21725" checksum="BA3D1E80EBC8C9D7" modified="2016-01-20" version="1">MSTLPRGRHGLSRAEVESVQRERIFHGMAQAMAERGYVGTPVAEIIRRAGVSRETFYQQFDSKQDCFLAAYEWATDVLRDGFAEGLAAVGTPLDRFADLLESYLDALADDPGRSRLFLVEAWAAGPEVMRRRLEVQREAAVVLAEVLGAHDDRGRFACEALLAAIVQLVTAQVVLDDAAGLAALHPRLVALAASLFPES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUP0</accession>
    <name>A0A0Q8VUP0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="16">Alpha-ketoglutarate decarboxylase</fullName>
            <ecNumber evidence="16">4.1.1.71</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="16" type="primary">kgd</name>
        <name evidence="16" type="ORF">ASE19_03340</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <reference evidence="16 17" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(R)-N(6)-dihydrolipoyl-L-lysyl-[2-oxoglutarate dehydrogenase complex component E2] + succinyl-CoA = (R)-N(6)-(S(8)-succinyldihydrolipoyl)-L-lysyl-[2-oxoglutarate dehydrogenase complex component E2] + CoA</text>
            <dbReference type="Rhea" id="RHEA:15213"/>
            <dbReference type="Rhea" id="RHEA-COMP:10581"/>
            <dbReference type="Rhea" id="RHEA-COMP:10582"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="ChEBI" id="CHEBI:83120"/>
            <dbReference type="EC" id="2.3.1.61"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>(R)-N(6)-lipoyl-L-lysyl-[dihydrolipoyllysine-residue succinyltransferase] + 2-oxoglutarate + H(+) = (R)-N(6)-(S(8)-succinyldihydrolipoyl)-L-lysyl-[dihydrolipoyllysine-residue succinyltransferase] + CO2</text>
            <dbReference type="Rhea" id="RHEA:12188"/>
            <dbReference type="Rhea" id="RHEA-COMP:10483"/>
            <dbReference type="Rhea" id="RHEA-COMP:10484"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:83099"/>
            <dbReference type="ChEBI" id="CHEBI:83120"/>
            <dbReference type="EC" id="1.2.4.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Carbohydrate metabolism; tricarboxylic acid cycle; succinyl-CoA from 2-oxoglutarate (dehydrogenase route): step 1/1.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.71" evidence="16"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56855">
        <property type="protein sequence ID" value="KRC56855"/>
        <property type="gene ID" value="ASE19_03340"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00997"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004149">
        <property type="term" value="F:dihydrolipoyllysine-residue succinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004591">
        <property type="term" value="F:oxoglutarate dehydrogenase (succinyl-transferring) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001078">
        <property type="entry name" value="2-oxoacid_DH_actylTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032106">
        <property type="entry name" value="2-oxogl_dehyd_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011603">
        <property type="entry name" value="2oxoglutarate_DH_E1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001017">
        <property type="entry name" value="DH_E1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031717">
        <property type="entry name" value="KGD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042179">
        <property type="entry name" value="KGD_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23152">
        <property type="entry name" value="PTHR23152"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00198">
        <property type="entry name" value="2-oxoacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16078">
        <property type="entry name" value="2-oxogl_dehyd_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00676">
        <property type="entry name" value="E1_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16870">
        <property type="entry name" value="OxoGdeHyase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000157">
        <property type="entry name" value="Oxoglu_dh_E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00239">
        <property type="entry name" value="2oxo_dh_E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="11" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="13" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="16" id="KW-0456">Lyase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="11" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Transket_pyr" evidence="15">
        <location>
            <begin position="912"/>
            <end position="1105"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="76"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="851"/>
            <end position="870"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="13">
        <location>
            <begin position="822"/>
            <end position="849"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="14">
        <location>
            <begin position="88"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="14">
        <location>
            <begin position="103"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00033664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="SMART" id="SM00861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KRC56855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1248" mass="137057" checksum="E1C7B712177C3F86" modified="2016-01-20" version="1">MTQSSDQSHGSPEPVDFGANEWLVEEMKEQFEADPNSVDPAWAAFFKGAATNGTTPATAAAPAAAAAPAPAPAAAPAAQATPAAPAAAPAPAAAPTPKATPAPQVSPASTTTPTPKADAEKPTPKDAPRPAPVTASDEPTLTVLRGIPAATAKNMDISLSVPTATSVRNMPVKLLWDNRIVINSHLKRARGGKVSFTHLIGYAIVKAIKAQPAMNNTYDEINGKPTMVTPAHINLGLAIDQVKADGSRQLVAPSIKACESMDFAQFWTAYEEIVRKAKDNKLTMEDYSGTTVSLTNVGGLGTNNSVPRLMQGQAAIIGVGSMDYPPEFQGASEETIARNAISRIMTMTSTYDHRVIQGAQSGEFLGQVHKYLLGQDGFYDEIFRALRIPYEPIRWNADVATSHDDEIDKQARILELIHAYRVRGHLMADTDPLEYKQRSHPDLRIESHGLTLWDLDREFPTGSFGGGDRRFMKLRHILGILRDSYCRTTGIEYMHIMDPEQRRWIQERVEQPHTKLPREEQLRILLKLNQAEAFETFLQTKFVGQKRFSLEGGETTIPVVDEIAEAAAQEGLEEVAIGMAHRGRLNVLANIVGKSYNQIFREFEGNIDPRTVQGSGDVKYHLGAEGAFVAGTGETIAVSVAANPSHLETVDPVLEGIARAKQDVLNRGEEFPVLPVLLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHVVINNQVGFTTSPGSSRSTLYCTDVARMVQAPIFHVNGDDPEACIRVARLAFEYRQTFKSDVVIDLVCYRRRGHNEGDDPSYTQPLMYDLIEQKRSVRKLYTESLIGRGDITIEEAEQVLRDYQQQLERVFTEVREADTKPDEWTTVPDYPDKSVGETQTSVTPEVMKRIADAYVTPPEGFTVHPKVMPQLQRRAAAIADGPIDWGTGEILAFGSLLMDGRPVRLAGQDSRRGTFVSRFATIIDRHNADEWTPLANLTEDQAKFFVYDSLLSEYAALGFEYGYSVARPDALVLWEAQFGDFVNGAQSVIDEYISAGKTKWGQDSGVVMLLPHGYEGQGADHSSARIERFLTLCADEAMVVAQPSTPASYFHLLRQHSLGGEHKPLIVFTPKSMLKRKEAASQPSDFTSGEFRPVIGDDTVDPAKVTTVLLVSGRLTWDLVVERQKSNREDVAILRVEQLYPWPVEAIKAELAKYPDAKVKWVQDEPYNQGPWPSYYLNVVPQLDRAIEPVTRKASSTTAVGTAKRHLEEAKVLIGEAFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUT4</accession>
    <name>A0A0Q8VUT4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_03610</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892920.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56903">
        <property type="protein sequence ID" value="KRC56903"/>
        <property type="gene ID" value="ASE19_03610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Protein kinase" evidence="8">
        <location>
            <begin position="19"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="325"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="390"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="483"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="502" mass="53506" checksum="46562728B301932B" modified="2016-01-20" version="1">MNQQTNQQMSQNAPQIPGFRFIDHIGEGGFADVFRYEQELPTRQVAIKVLRNSSDTAALELFRAEANVMAQLSNHPSIVPIYQAGVSSDGRAFLVMEFCPPPHVAQRYRAQPLAVGEVLDIGVKIASAVETAHRAGILHRDIKPHNILTSTFGVPLLTDFGIASVVGEAGAAGQGLSIPWSPPEALTADSHDVRSDVYSLAATLYSLLIGHPPVERRDAPNDNASLMHRIERGQLTPLRRPDVPASLLDVLRRAMSVEVGKRPVSAMVLGRQLQDVQIELRQSPTRLEVMDASPSALSEEHPNDARTLVRPVSVIIPAAVSARPHPVAPEVDDRTRVPGAAPVATGGGTEGATPPRRTDDGGPGRGGRIAVGVVAALVAAGIGFALLAGGSDDEDPRQGPIHGEGPADPHKAIDVPEAPVVTVSHRGNRWTFSWAQEKPREGDEFKVVMTGDGYEDAEPDWTRDSSRTITVPRDATVCVQVSVSRPGSQVSEASAPKCGVGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW04</accession>
    <name>A0A0Q8VW04_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58909">
        <property type="protein sequence ID" value="KRC58909"/>
        <property type="gene ID" value="ASE19_22870"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021454">
        <property type="entry name" value="DUF3105"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11303">
        <property type="entry name" value="DUF3105"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360422" evidence="1">
        <location>
            <begin position="27"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="195" mass="20198" checksum="D49ED15606A94AD2" modified="2016-01-20" version="1">MLPVVIAGVIAVGLVTAAVAVPLALADDDSTTAGEDIDTSDLSAVRTYDGLTYQHLEVGEEHDYPQSPAVGGDHAPVWLECGAYDEPLPEVNAVHDLEHGSTWLTYRPDEVDDAGVAKLEELLPANGLLSPYPDQEAPVVITVWGRQLDLVGPDDPRIGLFLAAYGAGTTAPEPFASCNGGVDPDDLAGSGGVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW63</accession>
    <name>A0A0Q8VW63_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L35</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpmI</name>
        <name evidence="6" type="ORF">ASE19_23255</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the bacterial ribosomal protein bL35 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_028654205.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58973">
        <property type="protein sequence ID" value="KRC58973"/>
        <property type="gene ID" value="ASE19_23255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2046660at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.410.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00514">
        <property type="entry name" value="Ribosomal_L35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021137">
        <property type="entry name" value="Ribosomal_L35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018265">
        <property type="entry name" value="Ribosomal_L35_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001706">
        <property type="entry name" value="Ribosomal_L35_non-mt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037229">
        <property type="entry name" value="Ribosomal_L35_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33343">
        <property type="entry name" value="PTHR33343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01632">
        <property type="entry name" value="Ribosomal_L35p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00064">
        <property type="entry name" value="RIBOSOMALL35"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143034">
        <property type="entry name" value="SSF143034"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00001">
        <property type="entry name" value="rpmI_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00936">
        <property type="entry name" value="RIBOSOMAL_L35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC58973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="64" mass="7070" checksum="04139090539F3765" modified="2016-01-20" version="1">MPKNKTHSGASKRFKVTGSGKILREKAGKRHNLEKKASKVTRRLTGTVEVAKNDVPRAKKMLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXJ8</accession>
    <name>A0A0Q8VXJ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_00015</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896873.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59469">
        <property type="protein sequence ID" value="KRC59469"/>
        <property type="gene ID" value="ASE19_00015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1309950at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041642">
        <property type="entry name" value="KstR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17925">
        <property type="entry name" value="TetR_C_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="19"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="22729" checksum="73DEC3CD2AF2A223" modified="2016-01-20" version="1">MPRIAEARQPAEPTSAEQKDRYRRILRAASKLGAEHGLERMQMNDVAKEAGVAIATLYRYFPSKTDLFVGVLHSQIQRLSDAGDGDGVVPSAPAGERAAAVADVLIGAGRGMLARPQLAMAMLQANNAAQLQGGREYTEANAAFHGVLLRALGVEEPADEDFRMVRITEQTWYGVLVSVLNGVITIDQADADIRLATKLLLGPRYDEEAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXV9</accession>
    <name>A0A0Q8VXV9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA (guanine-N(7)-)-methyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.33</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">tRNA (guanine(46)-N(7))-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA(m7G46)-methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">trmB</name>
        <name evidence="3" type="ORF">ASE19_00685</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>guanosine(46) in tRNA + S-adenosyl-L-methionine = N(7)-methylguanosine(46) in tRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42708"/>
            <dbReference type="Rhea" id="RHEA-COMP:10188"/>
            <dbReference type="Rhea" id="RHEA-COMP:10189"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="ChEBI" id="CHEBI:74480"/>
            <dbReference type="EC" id="2.1.1.33"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">tRNA modification; N(7)-methylguanine-tRNA biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.33" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896759.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59581">
        <property type="protein sequence ID" value="KRC59581"/>
        <property type="gene ID" value="ASE19_00685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1025521at2"/>
    <dbReference type="UniPathway" id="UPA00989"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008176">
        <property type="term" value="F:tRNA (guanine-N7-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01057">
        <property type="entry name" value="tRNA_methyltr_TrmB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003358">
        <property type="entry name" value="tRNA_(Gua-N-7)_MeTrfase_Trmb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23417">
        <property type="entry name" value="PTHR23417"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02390">
        <property type="entry name" value="Methyltransf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00091">
        <property type="entry name" value="TIGR00091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51625">
        <property type="entry name" value="SAM_MT_TRMB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0819">tRNA processing</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="1">
        <location>
            <begin position="225"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="157"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="247" mass="27676" checksum="EE7818133E2BA41A" modified="2016-01-20" version="1">MNDEQDQAGGVRPARPHHKLTDDGRRVREVLTYARRGSRFTPKQQAAWDGYADRWVIPDAAVDAPDFSWAQWFGREAPLVVEIGGGVGEATAALAAARPEVNVLALEVWLPGVAEGLGRVAEAGATNVRFSSVDAVWTLEHLVAEGSISELWTFFPDPWHKTRHHKRRLVNEEHSRLVASRLAPGALWRLATDWAEYADQMVEVLDAEPQLEGGIVERWAERPVTKFERKGLAKERTITDLAYRRVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VY97</accession>
    <name>A0A0Q8VY97_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">LexA repressor</fullName>
            <ecNumber evidence="12">3.4.21.88</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">lexA</name>
        <name evidence="17" type="ORF">ASE19_01005</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <reference evidence="17 18" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>Hydrolysis of Ala-|-Gly bond in repressor LexA.</text>
            <dbReference type="EC" id="3.4.21.88"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="12">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 12 13">Belongs to the peptidase S24 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.88" evidence="12"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896708.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59633">
        <property type="protein sequence ID" value="KRC59633"/>
        <property type="gene ID" value="ASE19_01005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1933795at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06529">
        <property type="entry name" value="S24_LexA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00015">
        <property type="entry name" value="LexA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006200">
        <property type="entry name" value="LexA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039418">
        <property type="entry name" value="LexA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006199">
        <property type="entry name" value="LexA_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006197">
        <property type="entry name" value="Peptidase_S24_LexA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015927">
        <property type="entry name" value="Peptidase_S24_S26A/B/C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01726">
        <property type="entry name" value="LexA_DNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00717">
        <property type="entry name" value="Peptidase_S24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00726">
        <property type="entry name" value="LEXASERPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00498">
        <property type="entry name" value="lexA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 12 13" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="4 12" id="KW-0227">DNA damage</keyword>
    <keyword evidence="10 12" id="KW-0234">DNA repair</keyword>
    <keyword evidence="3 12" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8 12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 12 13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 12" id="KW-0678">Repressor</keyword>
    <keyword evidence="11 12" id="KW-0742">SOS response</keyword>
    <keyword evidence="9 12" id="KW-0804">Transcription</keyword>
    <keyword evidence="7 12" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="LexA_DNA_bind" evidence="16">
        <location>
            <begin position="21"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S24" evidence="15">
        <location>
            <begin position="123"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="12">
        <location>
            <begin position="47"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="active site" description="For autocatalytic cleavage activity" evidence="12">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <feature type="active site" description="For autocatalytic cleavage activity" evidence="12">
        <location>
            <position position="202"/>
        </location>
    </feature>
    <feature type="site" description="Cleavage; by autolysis" evidence="12">
        <location>
            <begin position="130"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU003991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF00717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF01726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KRC59633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="241" mass="25908" checksum="5D1A0A8F8A22EFED" modified="2016-01-20" version="1">MAERKAGRGVTELPDGPPDATGLTPRQQRVLAHIKDSIEKRGYPPSMREIGQAVGLTSTSSVAHQLRVLEEKGYLKRDPNRPRALEVFLPEVMAARRAMGSAEETTYDETGIGDAAPVPANVPVVGRIAAGGPILAEERVTDVFPLPRQLVGDGQLFLLEVSGESMIEAAICDGDYVVIRQQPTAENGEIVAAMIDGEATVKTFQRTGGQVWLLPHNPAFEPIDGTHATILGKVTAVLRRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYS1</accession>
    <name>A0A0Q8VYS1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminoglycoside phosphotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00145</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896850.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59490">
        <property type="protein sequence ID" value="KRC59490"/>
        <property type="gene ID" value="ASE19_00145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1457558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05154">
        <property type="entry name" value="ACAD10_11_N-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041726">
        <property type="entry name" value="ACAD10_11_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="61"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="373" mass="41103" checksum="889F70A39D068F2B" modified="2016-01-20" version="1">MTLQRSSRDADDVRARLTGWLATVLPEGADPEVTVHEGIQTNGMSSETVLLGVTATEDGRRVTKEYVARVAPAAGDLPVFAEYRLTDQYDAMRLAGELAGVPVPPVGLNETTGEVLGTPFFLMERLDGAVPPDVLPYPFGDNWLFDASPEQQARLQRTSVEVLAKLHGIPAAATTFAFLDPAVTGHEGATPLARNLAKTRAWYDYAITTREASPRSPLIERGLDWLEANLPADEGEPVLVWGDSRIGNMMYRDFEPVAVLDWEMATLGPREMDLAWMVFAHQVFQEIATMLGLPGMPDFLATDDVVATYRELTGVETGDLTWYLLHAAVNWGCVFLRTSARQIHFGEIEVPADPESVFHHRPLFERLLEEVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYX4</accession>
    <name>A0A0Q8VYX4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sodium:proton antiporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01245</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896661.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59680">
        <property type="protein sequence ID" value="KRC59680"/>
        <property type="gene ID" value="ASE19_01245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2003359at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046291">
        <property type="entry name" value="DUF6328"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19853">
        <property type="entry name" value="DUF6328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="132"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="156" mass="17066" checksum="2D4DA4D26C042036" modified="2016-01-20" version="1">MRPPSALRDQRPPEQITRNLAELLQELRVMQTGVQILTGFLLTVPFTERFSTLTETQQRIYLGILLGAVATTLVIVAPVSFHRLLFRQGEREWLVHAAHLCCLAGLLGLSLVSVAVVFLVFDVVLGSAEATIAAAAAALAFIVMWAAVPFSRSRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZK0</accession>
    <name>A0A0Q8VZK0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Acetyl-CoA acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_01805</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896561.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59778">
        <property type="protein sequence ID" value="KRC59778"/>
        <property type="gene ID" value="ASE19_01805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="550338at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="5">
        <location>
            <begin position="274"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="2">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="352"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC59778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="41045" checksum="15DD68C7491594DC" modified="2016-01-20" version="1">MPTAVIVDAVRSPLGRGKPAKDGKPGGVLSSLHPADLLGQVMRQLIERSGIDPALVDDVITGCVSQVGEQSGPVGRWAWLAAGLPESVPSVAVHRACGSSQQAVEFAAQGVIAGVHDIVVASGVESMSRIPMGAGRIGMDPFGPSVAERYAPGLVPQGVSAEIIAHEFGLSRSRLDTFSALSHELAVASDASAEIVPVTLPDGTVVTLDETPRPGTTVEGLAGLPTVFATDEYRARFPEIAEWKITPGNSSQLTDGAAAILIMSEERAAELGLTPRARIHTMAVAGDDPIRMLTGPIPATEKALKRSGLSLDAIDHYEVNEAFAPVPLAWAQHFGADESRLNPRGGAIALGHPLGGSGARLMTTMLNGLEATGGRYGLQTMCEAGGMANATIIERI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZK4</accession>
    <name>A0A0Q8VZK4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">MFS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_22755</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892596.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58887">
        <property type="protein sequence ID" value="KRC58887"/>
        <property type="gene ID" value="ASE19_22755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="626204at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="107"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="147"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="171"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="211"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="248"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="279"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="303"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="338"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="367"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="215"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC58887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="401" mass="40905" checksum="E6E79F4414A23F16" modified="2016-01-20" version="1">MLQTYRQIFTPPTALFSLSGLVARLPISMVGLGIVLLAEHETGSYGFAGSVSAVALIANALFAIPQGRLIDRLGQGRVLSVVITVWGIGLALAMGSLEWDWPHWSTYLLAAVAGAALPSVGTCVRARWSHTLADQPERLHTAFSFEAVADETVFLVGPIAVTMLATGVHPAAGLIAALVTGVIGTYVFAAQRATEPPAHPPVSAEVVRPPIPWGAIVPLTAVGTALGILFGAAEVVTVAFSEEEGTKAAAGFLLAIWAFGSLVAGLVSGAISWRRGPLFRLRLGALGMLVAMVPLPFVPSLPVMGAVLLVGGLAISPTLIAALSLAERVLPTERLTEGMAFIQTGIAAGLAPGAAIAGVVIDAHGASPAYLVCVAGGALGLAGALATRVPATVADHEQQLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMB0</accession>
    <name>A0A0Q8UMB0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20020</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46156">
        <property type="protein sequence ID" value="KRC46156"/>
        <property type="gene ID" value="ASE19_20020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="846054at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="572" mass="58424" checksum="933366BF604EC194" modified="2016-01-20" version="1">MVTLLMAFVIVLIMIGSAFVLDIGLQRVARTDMQAVADLVALDLARELDGRSVGELTPVMNAELTRSRTRNASAVGDEPPQLSYQLGRMATSGFAPMTSGVPSAVRVVAQTDVTFAFASVTGADSGGARRSAAAESASTACFRLGSFVAAIRASDSTVLEPLNDLLGVNLTLVSYQGLAFADVRLDQLTSTSAIGSPEALLNGSITYAQLINATIEALTREPGDNTVALQALSRIASSAVTASIGPINLSNVLHVAPTDNAAMDVELDVLDLVGSARLSDGKHFLGVPNIQGQVPGVGYQYTGGINLVSAAELACGTPNSAQAKADTAQLDGTLGIEFTNLPSISVPTLGTLQTPKGSGNLQVVAGSGTGQLVAPPAGHCGDGSVVDPSTFSVQVATGLASYQMHADVSVAADVKLTDLVSLGLTSVLTNLLGNILTLGSKISLEVDVRLTVGTVAGAGGGRADLKIPPNDQTPISTGYAMTLDPSTIIPTVLSVKLNGKSAQLPLVTAITNPIANVLVTTGKGFVEKTLTPLINNINNMFIGPVARMIGLRLGGADVYGVGITCARPRLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMC5</accession>
    <name>A0A0Q8UMC5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20015</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46155">
        <property type="protein sequence ID" value="KRC46155"/>
        <property type="gene ID" value="ASE19_20015"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012495">
        <property type="entry name" value="TadE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07811">
        <property type="entry name" value="TadE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="158" mass="16678" checksum="357B6B0AD6F5F5AE" modified="2016-01-20" version="1">MLWGRARERRAHDEGQRGAAAVEFALILPILMILIFGIISYGMMLSFRQAISQAAAEGARAAAVAQRDADQVPNARAAVNEALEGYGVTCSGSSLTRDGVTVGSCAVTIATCDGEPATVKCASVRITYDYADHPLLGVPMMGMVLPDELEYTAVARVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMJ4</accession>
    <name>A0A0Q8UMJ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pirin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_20410</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the pirin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895991.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46220">
        <property type="protein sequence ID" value="KRC46220"/>
        <property type="gene ID" value="ASE19_20410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="833478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012093">
        <property type="entry name" value="Pirin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008778">
        <property type="entry name" value="Pirin_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003829">
        <property type="entry name" value="Pirin_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13903">
        <property type="entry name" value="PTHR13903"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02678">
        <property type="entry name" value="Pirin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05726">
        <property type="entry name" value="Pirin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006232">
        <property type="entry name" value="Pirin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pirin" evidence="3">
        <location>
            <begin position="42"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="Pirin_C" evidence="4">
        <location>
            <begin position="203"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="317" mass="33963" checksum="1EE54280AE548E43" modified="2016-01-20" version="1">MPAITVDDLTVLPRLKSPGLGDQPRPVWQVTTAPTGYEGEGFPVRRAFAGIDMKHLDPFIMMDQMGEVEYAPGEPKGTPWHPHRGFETVTYIIDGVFDHQDSHGGGGTITNGDTQWMTAGSGLLHIEAPPEWLVQSGGLFHGIQLWVNLPRDSKMNDPRYQDIRSGEVALLTTDDAGALVRVIAGAVDGHDGPGSTFTPMALVHATIEPGARLDLPWNVDHNALVYVLNGSGSVGTTDASPVRTGQTAVLGAGDFLTITADERQESRSPKLDVVIVGGQPIREPIAWAGPFVMNTKAEVLAAYEDFQKGRFGLPIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMP4</accession>
    <name>A0A0Q8UMP4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Phosphoglucosamine mutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">manB</name>
        <name evidence="9" type="ORF">ASE19_20725</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the phosphohexose mutase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896041.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46270">
        <property type="protein sequence ID" value="KRC46270"/>
        <property type="gene ID" value="ASE19_20725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="256504at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016868">
        <property type="term" value="F:intramolecular transferase activity, phosphotransferases"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005844">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016055">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I/II/III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005845">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005846">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005843">
        <property type="entry name" value="A-D-PHexomutase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036900">
        <property type="entry name" value="A-D-PHexomutase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005841">
        <property type="entry name" value="Alpha-D-phosphohexomutase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02878">
        <property type="entry name" value="PGM_PMM_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02879">
        <property type="entry name" value="PGM_PMM_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02880">
        <property type="entry name" value="PGM_PMM_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00408">
        <property type="entry name" value="PGM_PMM_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00509">
        <property type="entry name" value="PGMPMM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53738">
        <property type="entry name" value="SSF53738"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55957">
        <property type="entry name" value="SSF55957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PGM_PMM_I" evidence="6">
        <location>
            <begin position="13"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_II" evidence="7">
        <location>
            <begin position="160"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_III" evidence="8">
        <location>
            <begin position="270"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_IV" evidence="5">
        <location>
            <begin position="379"/>
            <end position="455"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="459" mass="48508" checksum="06258382B621CFEF" modified="2016-01-20" version="1">MAHATTSPENLSKVFKAYDVRGIVGEQLDEDLARAAGAAYVEVLGADAIVVGFDMRPSSPSLAGAFADGATNAGADVTMIGLASTDQLYFASGHLELPGAMFTASHNPAAYNGIKLCRSFAQPVGMESGLAEIRDRVAAGTPVASGGRVGSIGSHDVLQAYAAHLLALAPVKGRTLKVVVDAGNGMAGHTAPAVFDRLAGQVEMVPMYFELDGTFPNHEANPIEPANLVDLQKRVISERADIGLAFDGDADRCFLVDERGELVSPSTLTALIAARELAKEPGATVIHNLITSRAVPEIVEELGGTPVRTRVGHSYIKATMAETDAIFGGEHSGHFYFRDFWRADSGMLAALHAMAALAEADVPLSDLLASYERYPLSGEINSTVADQAAVLAELESTWGAREGVSIDKLDGLSVTHADWAFNVRASNTEPLLRLNAEGKDEPTMARVRDEVLATIRGER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN63</accession>
    <name>A0A0Q8UN63_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20430</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895994.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46223">
        <property type="protein sequence ID" value="KRC46223"/>
        <property type="gene ID" value="ASE19_20430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1606159at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="109"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="137" mass="14595" checksum="AC1FE0E6B1517691" modified="2016-01-20" version="1">MTLAQNLARIALGATMTAAGLTHLTVARDEFRAQVPSWFPVDEDIVVLASGAVEIGLGAAFAALPKRRRLVGGLLAAFFVAIFPGNIAQYVEGTSAFGLDTDQKRFARLFFQPVLVLWALWGGGLLRGRRGAVGDLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN89</accession>
    <name>A0A0Q8UN89_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Carnitine dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21770</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896223.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46454">
        <property type="protein sequence ID" value="KRC46454"/>
        <property type="gene ID" value="ASE19_21770"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="414" mass="44835" checksum="869A4AA851D25E99" modified="2016-01-20" version="1">MTGPLTGIRVLDLSAMLSGPWAASILGDQGAEVIKVEPPRTGDHVRSLPNRSGGLASMFLNVNRSKRSLTLDLKSEDGKKVLFDLVRRADVLVQNFRPGVVERLGISFDDLIAINPKLVYLSISGFGEGGPYSERRAYDPIVQAVSGLTTIQAGSDEDRPRLIRTVLPDKLTAITGAQAVCSALVARATTGEGQHVRLSMLDSVLAFMWASDMNAYTFVDKPVTPEKAASFIDLIYETADGYITVSTMSNKEWTAFCKAAERPDLLEDERFDTPAKRDANVNERLAEIQKILLERPGKEWLELLTEHDVPCAPALRRFEVIEDPQVIASGTIIETDHPIAGRLRQARVAARFSHTPVATPVGAPGLGQHSVEVLAEAGFDTSTIDRLLAEGVVGNETGEVPASDDETHVITQGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNI5</accession>
    <name>A0A0Q8UNI5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RNA polymerase subunit sigma-24</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_22345</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46550">
        <property type="protein sequence ID" value="KRC46550"/>
        <property type="gene ID" value="ASE19_22345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="26"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="115"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="185" mass="20247" checksum="8210BE3F875AC4AE" modified="2016-01-20" version="1">MTAPDGAPDRSERRVGVEASEFDEFYTASFRRVTGQVYAMIGDFEEATECTQEAFARAWAHRRKLDKAEYPEAWVRTTAYRLAVSRWRRRKRGERSPDRALQGAGAVAAVDESHVALVAALRQLPEAQRQALVLHHIADLPVQQVAAEVGVPEGTIKARLSRGRAALAELLADETGLAGGGVTHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNS4</accession>
    <name>A0A0Q8UNS4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Radical SAM protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21205</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896399.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46630">
        <property type="protein sequence ID" value="KRC46630"/>
        <property type="gene ID" value="ASE19_21205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="970297at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023862">
        <property type="entry name" value="CHP03960_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045784">
        <property type="entry name" value="Radical_SAM_N2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19864">
        <property type="entry name" value="Radical_SAM_N2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03960">
        <property type="entry name" value="rSAM_fuse_unch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="1">
        <location>
            <begin position="260"/>
            <end position="502"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="646" mass="72509" checksum="155467428EE104A0" modified="2016-01-20" version="1">MSVESVFPRLEPHLLSVSKPIQYVGGELNMVTKDWDAAEVRWVLMYPDAYEVGLPNQGVQILYEVLNEREWILAERTYAVWPDMEKLLREQQIPQFTVDNHRPVGAFDLFGVSFSTELGYTNLLNALDLAGIPLHAVDRDETHPVVIAGGHAAFNPEPISDFVDAAVLGDGEEVVLKISELVREWKGEGRPGGRTELLRRLAVSGTVYVPRFYDVSYAPTGEIAAVVPNHPEAPDRVRKHTLMDLDQWPYPRNPLVPLAETVHERFSVEIFRGCTRGCRFCQAGMITRPVRERSIETIGDMVENGIRKTGFEEVGLLSLSSADHTEIGDVATGLADRYEGSNISLSLPSTRVDAFNITLANEFSRNGRRSGLTFAPEGGSERMRKVINKMVTEDDLIRTVATAYSHGWRQVKLYFMCGLPTETDEDVLQIAELAKRVIATGREVSGRNDIRCTVSIGGFVPKPHTPFQWASQLDVETTDERLRKLRDNVRADKKYGRAIGFRYHDGQPGIIEGLLSRGDRRVGRVIEQVWRDGGRFDGWSEHFSYERWVSSAEAALEGTGVDLDWFTTRERGYDEVLPWDHLDSGLDKDWLWSDWEDALAVGDGSSDVEVEDCRWTPCYDCGVCPEMGTEIQIGPTGHKLLPLSVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8URZ9</accession>
    <name>A0A0Q8URZ9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH araC/xylS-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21690</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46441">
        <property type="protein sequence ID" value="KRC46441"/>
        <property type="gene ID" value="ASE19_21690"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035418">
        <property type="entry name" value="AraC-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14525">
        <property type="entry name" value="AraC_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="214"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="34976" checksum="444CF865F72CA040" modified="2016-01-20" version="1">MATTALQDGRDERGFEAWEDQICHTFVPLRARCADDADGFSGEVDSTMLGSVMLAEVSASHALVERTPRLIRSDDPELYKFGLQVSGTSVIEQDDRQAHLGPGDLAIYDTSRPYRITFSDDFRMTVAMFPRSLVRLPAQRMAAMTAVRLAGDSGLGALIAPLMKGIGAELNASRPVIATHLGDAVVDLVTAAFAQQLGRALEPDSPSSYCALIAKVRKFVDDRLHEPSLTSKAVADAHFVSVRYLQKVFATEGISVSTLIRTRRLEQCRRDLVDPTCEHLSIAQIGCRWGFPDAAHFSRLFRATYGLSPREFRKASLSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UTL8</accession>
    <name>A0A0Q8UTL8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_20450</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S45 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895998.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46227">
        <property type="protein sequence ID" value="KRC46227"/>
        <property type="gene ID" value="ASE19_20450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="186419at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017000">
        <property type="term" value="P:antibiotic biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.439.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043147">
        <property type="entry name" value="Penicillin_amidase_A-knob"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023343">
        <property type="entry name" value="Penicillin_amidase_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043146">
        <property type="entry name" value="Penicillin_amidase_N_B-knob"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002692">
        <property type="entry name" value="S45"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34218">
        <property type="entry name" value="PTHR34218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01804">
        <property type="entry name" value="Penicil_amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0865">Zymogen</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359423" evidence="4">
        <location>
            <begin position="35"/>
            <end position="806"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="806" mass="86428" checksum="5664A817AC6E6D80" modified="2016-01-20" version="1">MRSPRVAALLAATLAVPALALAGPADAGPEPAAAATSPYDATIRITEHGIPHITATDWGSLGYGSGYATASSSICNLADTVLTARGQRSRELGGEGRYLDGVSLDASNLQVDAFVTDLHQRKVVENLLVSKAGPSARAKAMVKGYTAGINRWLRDNTITDPACRDQDWVKPDATEIDLWYGVYMANLIASSGNFLKEIVEADPPTLADPGLPDLGIDLPLPTTKAEVPAYAKQVDRAALLRSLGQDGDFGSNATAIGGDKSSTGRGLLLGNPHFPWVGRYKFTQQHLTIPGTYDVAGASLIGSPVVNIGWNKDVAWSHTVSTAYRFTPYEYFTVGPGPLYLTANGLLRKAEQRFVDVVVKQADGSLKTVREDVWRTPQGYVIDSPSQFMGWSPLSFWAIRDANAEHLRTIDTFLAMGEATSSRDLLARQDAGGGMPWVNTTAADRRGEVLYADHSVVPNVTNAMATRCLTPVGLLLKSVAGLPGLNGLLADGLCKWGTDADAQRPGILGPAKLPAVVRRDWVMNANDSYWTPNDKVRLEGYANIIGCEKCVRTMRTRMVQQYVIDRLAVGKETPVTLRGHEHENRVRAAEVMRAGGRLDEVCARTGETQACAVLKAWDGHSDTTSVGTHLFEAFVKRAPTGDNLWTVPFDAKDPINTPRGLRTDATVVKAMKDAIASVRAAGVAFDAPWGSLQVAGDRGAPAYPIGGGDGDLAGNANAVASRNPASNTDRYKPVSYGSSHIQAISYLANGTVDARTILTYSQYEDPASPWSSDQTRLFSEEKWVQFPWTPVQVAAATVRTVHLSGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUB6</accession>
    <name>A0A0Q8UUB6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17685</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893162.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48760">
        <property type="protein sequence ID" value="KRC48760"/>
        <property type="gene ID" value="ASE19_17685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="191097at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002591">
        <property type="entry name" value="Phosphodiest/P_Trfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01663">
        <property type="entry name" value="Phosphodiest"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="378" mass="39823" checksum="AEDBBCCEBA82857A" modified="2016-01-20" version="1">MAEVNGFCEPAYGVRSLGDLVPAAAHALGSPLGPAPSGLTLPDAASYVVFLIDGLGARLLERHAHAAPYLASLLAGSSPATAGVPSTTSTSLTSLGTGLTPGAHGLVGFTTRVPGTSDLLNALVWDQDVEPTQWQPHTTAFSSLQNAGVRVTVVNKREFNGSGLTVAAHRGADYVGVDRVGERIAAVIAASRPDPRQPALTYVYDGDLDWTGHRWGVASSQWLQQLAMIDHEAEQLREALPADRRLVVVADHGMVDVPDGSRLDVSAHDDLRDGVAIVGGEARFRHLYCTGGAVPDVVATWREVIGERAEVLTRAEAIGRGWFGPVDPSVLPRIGDVVVACRGDFAVLSTDGFPYEAKLIGMHGSLTPDEMLIPVLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUC8</accession>
    <name>A0A0Q8UUC8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 9">Thymidine kinase</fullName>
            <ecNumber evidence="2 9">2.7.1.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_17700</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + thymidine = ADP + dTMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19129"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17748"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.21"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the thymidine kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.21" evidence="2 9"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893165.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48763">
        <property type="protein sequence ID" value="KRC48763"/>
        <property type="gene ID" value="ASE19_17700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1279539at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004797">
        <property type="term" value="F:thymidine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071897">
        <property type="term" value="P:DNA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001267">
        <property type="entry name" value="Thymidine_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11441">
        <property type="entry name" value="PTHR11441"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00265">
        <property type="entry name" value="TK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF035805">
        <property type="entry name" value="TK_cell"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0237">DNA synthesis</keyword>
    <keyword evidence="6 9 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR035805-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC48763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="221" mass="24410" checksum="8426E7230F644CC7" modified="2016-01-20" version="1">MAELTFRTGTMDAGKSTLALQTNHNHAARGRVGRLFTSHDRAGVAIVSSRLGLTALAEEVEPDFDFWRYTVDALTQGARIDYFICDEAQFYTPAQVDQLAKVVDELQIDVFCFGILTDFRTRLFPGAARLVELADRTEVLQVEALCWCGKRATHNARTENGVMVTEGEVIVVGDVDNEPVSAPDDDVEVAYEVLCRQHHRRGLTAARARAVSLSPEPLPFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUP6</accession>
    <name>A0A0Q8UUP6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">RDD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_18525</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48907">
        <property type="protein sequence ID" value="KRC48907"/>
        <property type="gene ID" value="ASE19_18525"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010432">
        <property type="entry name" value="RDD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06271">
        <property type="entry name" value="RDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="23"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="55"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="RDD" evidence="6">
        <location>
            <begin position="16"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF06271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC48907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="15297" checksum="EA95AAEDAE84E0B0" modified="2016-01-20" version="1">MPSPTANRPAAPSFETASWGRRIIALLIDWMLCTVAVIAVYGLDEYTATGSVASLMVLPLFIVESTLLTWLGGGSIGQLLTGLCVVPAHGRLHRLNPVKVFGRQLLIALVIPPLVFRADGRGLHDLFAGTSTVTFATLRSLTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV04</accession>
    <name>A0A0Q8UV04_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Dihydroorotase</fullName>
            <shortName evidence="5">DHOase</shortName>
            <ecNumber evidence="5">3.5.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">pyrC</name>
        <name evidence="7" type="ORF">ASE19_19300</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>(S)-dihydroorotate + H2O = H(+) + N-carbamoyl-L-aspartate</text>
            <dbReference type="Rhea" id="RHEA:24296"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30864"/>
            <dbReference type="ChEBI" id="CHEBI:32814"/>
            <dbReference type="EC" id="3.5.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 3/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.3" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893437.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49035">
        <property type="protein sequence ID" value="KRC49035"/>
        <property type="gene ID" value="ASE19_19300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1319925at2"/>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004151">
        <property type="term" value="F:dihydroorotase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01317">
        <property type="entry name" value="DHOase_IIa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00220_B">
        <property type="entry name" value="PyrC_classI_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004722">
        <property type="entry name" value="DHOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002195">
        <property type="entry name" value="Dihydroorotase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00483">
        <property type="entry name" value="DIHYDROOROTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="6">
        <location>
            <begin position="46"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="56"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="320"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="302"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="148"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="275"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="302"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="306"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC49035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="427" mass="44391" checksum="9A442FCFABF8083A" modified="2016-01-20" version="1">MTTLIKGATLPDGTTADVLVADGTIAEVGTVTTKADDTIDADGLRLLPGLVDLHTHLREPGREDAETVLTGSRAAAVGGYTAVLAMANTNPVTDTAEAAERVLDLGRQAGLVDVQPVGAVTKGLAGAELAELGLMARSRAKVRVFSDDGKCVHDARVMRRALEYVKAFGGVVSQHSQDPALAGPTACCHEGELSGRLGLPGWPGIAEEVIVARDVMLARHTGSRVHVAHVSTAGSVEVVRWAKAQGIDVTAEVTPHHLLLTTDLLSGYDPTFKVNPPLRPAEDVEALRAALADGTIDAVATDHAPHARHDKEHAFVDAAFGMLGLETALSVVTTVMVEGGLLDWAGVARVMSANPAHIAGLDGHGRPIAVGEPANLTLVDPAAQVVVDRAASVSLSRNNPWHDRKLTGRVVATLLRGTPTVLEGALV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV51</accession>
    <name>A0A0Q8UV51_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">FAD-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18965</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893382.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48980">
        <property type="protein sequence ID" value="KRC48980"/>
        <property type="gene ID" value="ASE19_18965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="324612at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="607" mass="67445" checksum="289EA359539B82D9" modified="2016-01-20" version="1">MTQLDERPLTADTTDPATAWFAAFEDALAARDVDRAAGLFAATSFWRDLIAFSWNLTTVENPDGVADLLHATLDRVDPSCFRLTEPAATADGVTTAWFEFETAVGRGRGLVRIVDEDGPKAWTFLTTLYELKDHEEPKGVRRPMGAEHGATRERVTWLEKRQAEDAALGVDTQPYVLVVGGGQGGIALGARLRQLGVPALVIDKHPRPGDQWRNRYKSLCLHDPVWYDHLPYLKFPENWPVFAPKDKVGDWLEFYTRVMEVPYWSNTIATSAAYDEEAGEWTVHLEREGKPLVLKPSHLVMATGMSGKPNVPSYPGSDIFQGEQHHSSQHPGPDAYAGKKVVVIGSNNSAFDICGALWETGADVTMVQRSSTHIVKSDTLMDIGLGDLYSERALEAGMTTEKADLVFASLPYKIMHEFQIPLYDQMRERDKDFYDRMTAAGFDLDWGDDGSGLFMKYLRRGSGYYIDVGAAELVADGEVKLAHGQVSRLTETAVVLEDGTELPADLVVYATGYGSMNGWAADLISQEVADRVGKVWGLGSDTTKDPGPWEGEQRNMWKPTQQENLWFHGGNLHQSRHYSLYLALQLKARHAGIDTPVHRLQQVHHLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVB2</accession>
    <name>A0A0Q8UVB2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893345.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48943">
        <property type="protein sequence ID" value="KRC48943"/>
        <property type="gene ID" value="ASE19_18735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2040341at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007076">
        <property type="entry name" value="TfoX_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04993">
        <property type="entry name" value="TfoX_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TfoX_N" evidence="1">
        <location>
            <begin position="26"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="115" mass="12163" checksum="FCA7134D73508F9D" modified="2016-01-20" version="1">MAYDEALAQRIRDLLHDEPAVDGHELAEKRMFGGLAFLVGGNMAVAASGQGGLMVRVDPAEGDALVASTPAYPMEMRGRSMTGWLRVDLGDVASDDALAAWVRRGSSYAATLPAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVW4</accession>
    <name>A0A0Q8UVW4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21740</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46448">
        <property type="protein sequence ID" value="KRC46448"/>
        <property type="gene ID" value="ASE19_21740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275789at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="249" mass="25887" checksum="6B14468BDF31473A" modified="2016-01-20" version="1">MARSGHPVDAWGRTMSAQVVTSVGGSVATITINRSASPSDLDGAARAQLMLSLAAVAVDRTVLAVVLRGDGDDFCRGRDLDEYAARMAADLVMGSRELEAQTAQVVHALAAVPQPVIAAVRGRCAGEGLALALACDLRVMADDASLNVATCSMGERPDQRLREALERVVGVERGRELALSGRDFTAREAVEWGIVADVVPSAQVTDLALGQAAMLTRLPIGDLVGAKVKLAGAATRELERAMGAGSSNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXZ1</accession>
    <name>A0A0Q8UXZ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Fe-S cluster assembly ATPase SufC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">sufC</name>
        <name evidence="6" type="ORF">ASE19_15955</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily. Ycf16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893577.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50110">
        <property type="protein sequence ID" value="KRC50110"/>
        <property type="gene ID" value="ASE19_15955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1214676at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03217">
        <property type="entry name" value="ABC_FeS_Assembly"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010230">
        <property type="entry name" value="FeS-cluster_ATPase_SufC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43204">
        <property type="entry name" value="PTHR43204"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01978">
        <property type="entry name" value="sufC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="4"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="252" mass="27225" checksum="89E8AE2898E29CDB" modified="2016-01-20" version="1">MSTLEIKNLQVSVDTEDGAKEILKGVTLTIKDGETHAIMGPNGSGKSTTAYSIAGHPKYTITGGEVLLDGENLLEMSPDERARAGLFLAMQYPVEVPGVSMANFLRTAKTAIDGESPKLRTWVKDVNGALDRMKLDPAFSSRSVNEGFSGGEKKRAEIAQLDLLDPKFAILDEIDSGLDIDALKVVSDGINDYAARDGKGLLLITHYTRILRYVKPDVVHVFVDGRIAESGGPELADELEANGYERFLEAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYF5</accession>
    <name>A0A0Q8UYF5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16370</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893648.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50180">
        <property type="protein sequence ID" value="KRC50180"/>
        <property type="gene ID" value="ASE19_16370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377545at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="283" mass="30635" checksum="2C74FEE63C1C6A99" modified="2016-01-20" version="1">MSELSGRTFLVTGGNTGIGKETVRDLAGRGARVVIAGRSEEKNRAVIREIAAQTGNNDLDWIPLDLGDLDSVRAAAATFLAAGEPLHVLINNAGLAGKRGMTASGFELAFGTNHVGTFLFTELLRDHVVASGPGRIVNVASTGHYRAKGIDWDAVRRPSVTRTAFDEYCVSKLANVLHARELGRRLEGTDVTTYSLHPGAIASDVWREVPPGLRHVMKLFMKNTTQGAQTSLYCATSPDVAGQTGLYYDDRKVKQLSRVVTDELALELWERSEAWVDVARSDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYV4</accession>
    <name>A0A0Q8UYV4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16995</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893761.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50292">
        <property type="protein sequence ID" value="KRC50292"/>
        <property type="gene ID" value="ASE19_16995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2068436at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="81" mass="9262" checksum="6D6433C1D7BA89FE" modified="2016-01-20" version="1">MMWNDGPYHFGSAAMLAAMVLSWVVVGAAVYLGVRWLGRDRASADPLQIIDERLARGEIDVEEYDRLWQAITDRRQTARPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0L3</accession>
    <name>A0A0Q8V0L3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18670</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893334.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48931">
        <property type="protein sequence ID" value="KRC48931"/>
        <property type="gene ID" value="ASE19_18670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2063007at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="12"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="100" mass="10611" checksum="A538359D7FA0C696" modified="2016-01-20" version="1">MVLFRRSLGDILRSRRTELGLTLREVSGAARVSLGYISEIERGQKEASSELLSSLCDALEMPLSDVLREVADAVALEEAALVGATPITPRRTGAVVASAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1E0</accession>
    <name>A0A0Q8V1E0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_15325</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896517.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51452">
        <property type="protein sequence ID" value="KRC51452"/>
        <property type="gene ID" value="ASE19_15325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1616312at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010644">
        <property type="entry name" value="ChdC/CLD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36843">
        <property type="entry name" value="PTHR36843"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06778">
        <property type="entry name" value="Chlor_dismutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0349">Heme</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC51452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="243" mass="28053" checksum="AC1BE6AACBCB20BE" modified="2016-01-20" version="1">MSDQDPQGHIKTNAAKINELNDTIRFTMWSVFKLEQPLGADEVVRKAELAELEALAAELAAEDVVIRGVYDVAGLRADADLMLWWHAETSDQLQDAYHRLRRTAFGARLAPVWSQMALHRPAEFNRSHLPAFLADERAHAYVAVYPFIRSYEWYLLEDAERRRLLAEHGQMARDYPDVRANTVPSFALGDYEWMLAFEADDLTRIVDLMRHLRGSETRRHVREEVPFYTGRRVSFADLVARLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1H9</accession>
    <name>A0A0Q8V1H9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Succinate-semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">gabD2</name>
        <name evidence="5" type="ORF">ASE19_15420</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51484">
        <property type="protein sequence ID" value="KRC51484"/>
        <property type="gene ID" value="ASE19_15420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="293754at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="4">
        <location>
            <begin position="36"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC51484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="526" mass="56472" checksum="3C71B6073FA109A1" modified="2016-01-20" version="1">MVTGTTTTPLQRPASVTDELLERLVARVPGRTGATWKLTEVYTGEVLVELPQSTEQDIEQAFADARAAQDLWAQWPVEKRLEVFERAHTLLIDNAHTTADLIQVESGKNRRMAIEETCDPPMVMSYYLKRAKKLLAPAKHGGPVPFLSSSTEVRVPKGVVGIIAPWNFPFATGLSDAIPALIAGNAVVVKPDNKTALSPLFGISLLEEAGLPKGLFQVVCGEGPDIGPTLIDNADYVMFTGSTATGRVIGERAGRNLIGCCLELGGKNPMIVLDDVNVEEWVEGTTFGVFGNTGQICMHIERIYLPESRYDELKSAFVERAANLVIGAAYDFGPEIGSLVSPEHRDRVASHVEDAVAKGATVLTGGRARPDIGPAFFEPTVLEGVTKDMLAGATETFGPVVGLYPYRTVDEAIHLANDTDYGLNASVWSGDISRAEAVAARIESGNVNINDALATAYASKASPSGGVKNSGVGARHGDQGLLKYTDAKNVAVLKKQVMGPRPGQGYDAYVKQMLSSLKLMRRLRVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1P5</accession>
    <name>A0A0Q8V1P5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LLM class F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14845</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896437.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51370">
        <property type="protein sequence ID" value="KRC51370"/>
        <property type="gene ID" value="ASE19_14845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019919">
        <property type="entry name" value="Lucif-like_OxRdtase_MSMEG_2256"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03617">
        <property type="entry name" value="F420_MSMEG_2256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="10"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="337" mass="36437" checksum="2C76EEEECC213A18" modified="2016-01-20" version="1">MLVDLQLDARPDQALTRARELSEAGAAGLFTFEGPHDVFLPLAAVAGQVDADLMTNVAIAMPRSPMHLAHTAWDLQLMTGGRFRLGLGSQIRPHVEKRYGARWSPPAARMREIVSAVRAILTSWQHGTRLDFRGEHTTHTLMPPTFVPGPNPYGPPPILLGALGPLMTRTAAEVADGLLVMPFHSHRHFRERTLPAVAEGLSAAGRSVADFDVFPQAILAMGRTDEELTTARNGVRALLAFYGSTPSYRPVLDVEGWGELQPELNRLSKTGDVAAMIGLVDDTMLATLAVTGTPEECAAEIRRRFGDVPGVADRVCCYFPGHDPAADQVSDLVAALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2V1</accession>
    <name>A0A0Q8V2V1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16940</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893750.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50281">
        <property type="protein sequence ID" value="KRC50281"/>
        <property type="gene ID" value="ASE19_16940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1978329at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021449">
        <property type="entry name" value="DUF3099"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11298">
        <property type="entry name" value="DUF3099"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="34"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="58"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="88"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="113" mass="11882" checksum="6EA5930CDE17D0B2" modified="2016-01-20" version="1">MSSSRHGRSEPEAIRITTAGSDPQADIARRQKKYAIAMTIRTLCFIGAAITGAAGWNWVWPFLILASLFLPYVAVVLANANDSRSLDLPLTGGGGDAQRQLGPGVAPADGSDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3M8</accession>
    <name>A0A0Q8V3M8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Amino acid permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_18165</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893246.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48845">
        <property type="protein sequence ID" value="KRC48845"/>
        <property type="gene ID" value="ASE19_18165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="527053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="23"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="58"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="100"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="137"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="160"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="206"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="246"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="291"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="346"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="369"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="402"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="426"/>
            <end position="444"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC48845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="460" mass="47786" checksum="457E0B2A02C95B2C" modified="2016-01-20" version="1">MAVSQEPAELAPPAQTVRHLTPVLGLAGAVLMTVSCITPTSSLFIIVPEVLASQGSGAVIALVVGVVISVAVGACYAELGTRTPSSGGEYAMITHTLGRTLGWLTFTLTAALLVVIPPIIALGTADYLSSIVTVDRAAAGAVVMLLATFTAILDMRSNAFVTAIFLGIETVAATVVAYLGFTHAERGVGSLLKPHALDGSGALNPYTLGVLMAGLAVAMFVVNGFGTASYLAEEIIEPRKNVARAVFLSLFISAVIIIVPTAAVIIGAGSLTDLGELGFPDFVEAWAGSDVAAAVSVGIAIAIFNAVIVMMVQNGRVIYATGRDRTWPEPINKALTRMHPRFNTPYVATLVVGGAGALLAYLVDIEALLGVTSVIVSVVFILLAVGALTVRRTPHAGWHMPLWPLAPVVVIGALGYALLGSAAVDLVITGVIVVVALAYELLYLRPRRDERFLVDALEER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3Y0</accession>
    <name>A0A0Q8V3Y0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ion channel protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18925</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48973">
        <property type="protein sequence ID" value="KRC48973"/>
        <property type="gene ID" value="ASE19_18925"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013099">
        <property type="entry name" value="K_chnl_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003148">
        <property type="entry name" value="RCK_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07885">
        <property type="entry name" value="Ion_trans_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02254">
        <property type="entry name" value="TrkA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51201">
        <property type="entry name" value="RCK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="RCK N-terminal" evidence="2">
        <location>
            <begin position="145"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="371" mass="39957" checksum="EA2DFDFE082D24DE" modified="2016-01-20" version="1">MGDVPGGPAKSPSVGVVALPERIRSPWWELGRRLLAALAILVGTVMLVYFDREGYRDSGDATADNPYGVISLVDAIYYTTVTLSTTGYGDISPVSDPARLVNAFIITPLRIAFLVLLIGTTLEVLAQRGRELFRIARWRKQMGHHVVVIGYGTKGRSAVETLVNNGLDREHVVVVDPSPVALADAHADQLAVITGDATRRGVLQRAGVADADQVIITTGRDDSNVLAALTVRQLNPDAWIVAAVSEQENAPLMRQSGADSVITSSDAVGRLLGLSTLSPTLGTVMEDLLTYGEGLEVAERELLVNEVGMPPQSLPDQVIAVVRDEKVYRYFDPVVTLLARGDRLVVVRPAKELPWAPRPGTHNEAFAADED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4N5</accession>
    <name>A0A0Q8V4N5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_17470</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893816.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49089">
        <property type="protein sequence ID" value="KRC49089"/>
        <property type="gene ID" value="ASE19_17470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1195697at2"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030788">
        <property type="term" value="F:precorrin-2 C20-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11645">
        <property type="entry name" value="Precorrin_2_C20_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd11646">
        <property type="entry name" value="Precorrin_3B_C17_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006363">
        <property type="entry name" value="Cbl_synth_CobJ/CibH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012382">
        <property type="entry name" value="CobI/CbiL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006364">
        <property type="entry name" value="CobI/CbiL/CobIJ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003043">
        <property type="entry name" value="Uropor_MeTrfase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01467">
        <property type="entry name" value="cobI_cbiL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01466">
        <property type="entry name" value="cobJ_cbiH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00840">
        <property type="entry name" value="SUMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="4 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="8">
        <location>
            <begin position="8"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="TP_methylase" evidence="8">
        <location>
            <begin position="276"/>
            <end position="485"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC49089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="518" mass="55337" checksum="84BE7879D96DEE67" modified="2016-01-20" version="1">MDKAVGHFHVVGIGPGDPELITRKAERLIGAAGVVAFHAGVRKESHARRIAAHLIPADAVEEELRYPVTTGSTDHPGGYVGAMAEFYDDCEARLAAHLDAGRDVVLLAEGDPLFYGSSMYLLDRFRDRFPVEVVPGVPAFTAATATIPAPLVRQNDVLTVLPGTLPEPELARRLADTDGAIIMKLGRTFPAVRSALAQAGRLEGAMYVERASQPEERWLPVAEVDADSVPYFSLIVVPGDSTQPSTAARMRADWSRTAAQEPELLRFGTKPQPSELLVIGLGPGPDGWLTPEASAALAEVEHVVGYAPYVNRVPQRPGLQRHASGNTVEVDRARFALDLALRGERVAVVSGGDAGVFGMAAAVFEAAADPAHPEHAAVPVRVLPGISAVQAVAARAGAPIGADFAVVSLSDRLKPWAVVERRLRAIAEADLVLGIYNPASRSRREQVVETQKILLEHRSPDTVVVVGRDVGRDEESLTVTTLGTLDTDSIDMKCLLIVGASSTRVEPNGTVWTPRWVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4Z9</accession>
    <name>A0A0Q8V4Z9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">TGc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17740</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893172.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48770">
        <property type="protein sequence ID" value="KRC48770"/>
        <property type="gene ID" value="ASE19_17740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1134099at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002931">
        <property type="entry name" value="Transglutaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01841">
        <property type="entry name" value="Transglut_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00460">
        <property type="entry name" value="TGc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="domain" description="TGc" evidence="2">
        <location>
            <begin position="607"/>
            <end position="664"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="711" mass="76746" checksum="BE9F2405A183A79C" modified="2016-01-20" version="1">MSGGRQRGFPWLAVLGSLALVVVLVVGVAVVLVLDRDDDAPGDERDGGTSAEAARERLLGDGRTVLPTTASAQEAVPGFDYTAPVDGAAIDEDLVIPARYDAEAEDLWKGDPGRIEVYADQGLTRHVPFDILPDLTASDDDPRLALKPLRVRSTHIVREGGQVGAKPTWTLADVGTYWSLNPRVYVVQYLEPDGAQRARPLVTEVHFASETPAPEQVTASVTGQGDALVEWSPVAGATEYAVVVQRRTGDTLNGSVQVVGRTTKTSWSSEEVRQCHGSTCDQNEVLKLTTGDASLMASTPELVSDDVEVQLGVVAVVDRQPSVLAPVDLAGLEALPVRSDDGWDAGADVDNDGLAGLPSRFLFVSVDGSTRATGAYVERGEVRRQGRLWLVPVRGRGTRLSHVVRIPADAVGNIDADVRAFNTRAQRAYPKAGLGQTKVVIDVNHPKRPAPELPAPDLPVFGSNELSRFIAGQLVAGSTSIDLSRFEGKPGLPGFQDALDEAILQNPYALATFDEFSFDGSVLYVDPAFDAAELRVRQRSIADAAERIAKDETRPGMSVSDKVAAINRYLVDQADYDHVALAAAEKARARDKETPKRFQYAWTVDGILLDRSGVCMSYSFAFQAIAKEAGIESVIVTGDLANGGRHAWNKVKDGRSWRSVDVTWNDPGGPWRSGDGTRYLMIRDGQFTGNALRSEDDAWMADAYLRQYATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5P1</accession>
    <name>A0A0Q8V5P1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_09535</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894604.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52666">
        <property type="protein sequence ID" value="KRC52666"/>
        <property type="gene ID" value="ASE19_09535"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00391"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025993">
        <property type="entry name" value="Ceramide_glucosylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12726">
        <property type="entry name" value="PTHR12726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13506">
        <property type="entry name" value="Glyco_transf_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359723" evidence="4">
        <location>
            <begin position="34"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="376" mass="40677" checksum="C0289995B9AD240D" modified="2016-01-20" version="1">MSRRLTTLAGVGYLALQAGKAAVTLRAASRAPAATAPTDEAIAKVVVVQPILSGDPGLEDALRDNLLSLDGARFCWLVDEDDAEAQRVVDRIGAVDRVEVVLCPPAPDGVNPKLAKLQPALDAAAPDEVFLVLDDDTRLPRESLGALLAGLERATLATGLPAYLPGGTVWAQLVEQFVDNNAAMTYLTLDPVTINGMTWAMRVGDLRELGGFTPVLRNLTDDLAVAGAVLRSGGTICQTASPQWITTTVAGPGPYVRLLHRWMLFANLLLRRQPLRTVAAISVLHGTHPNLLWATVVGSVRTRRPAFLLAVLCGRALLLRHVQRRVYGRPLHRPAVSLVSELVQPAHLGHGAVQRTIRWRTRTYRVRSDDDFSPVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5V4</accession>
    <name>A0A0Q8V5V4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_09325</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894566.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52628">
        <property type="protein sequence ID" value="KRC52628"/>
        <property type="gene ID" value="ASE19_09325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022781">
        <property type="entry name" value="Flagellar_biosynth_FliO"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04347">
        <property type="entry name" value="FliO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="14"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="111"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="156" mass="15769" checksum="0210051A06E089B2" modified="2016-01-20" version="1">MIALSASDPSIGALAFRLLGSLAVVVGLLLLIARCVNRRFKTPAGAAIQVVHRQALGRGQGVAVVSVGTRVLVLGTTEQQVTLLAEVEPDEVGLDVLADGGLGPIGVVPDADTDADAETAAPAPRRTTATGPLAGSILSADTWKQTLAAVTGRRAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6C6</accession>
    <name>A0A0Q8V6C6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_11220</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894898.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52965">
        <property type="protein sequence ID" value="KRC52965"/>
        <property type="gene ID" value="ASE19_11220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="744602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="28"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="263"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="507" mass="54805" checksum="1B8E920ADD1B611C" modified="2016-01-20" version="1">MTVYAAPGQPDSLVTVASRYGHYIGGQWVDPIKGGYFENISPVNGKPFTEVGRGTEEDIEAALDAAHAAAPAWGKASATVRANILNKIADVMEAHLTEIAVAETWENGKPVRETLAADIPLAVDHFRYFAGVLRAQEGSAGELDETTVAYHFHEPLGVVGQIIPWNFPILMAVWKLAPALAAGNAVVLKPAEQTPWSILKLMELIGDLLPAGVVNVVNGFGVEAGKPLASSSRVAKVAFTGETTTGRLIMQYASQNIIPVTLELGGKSPNIFFESVADERDAFYDKALEGFTMFALNQGEVCTCPSRALVQRSIYSDFVHDAVKRVEQVKQGNPLDDTTMIGAQASNDQLEKILSYIEIGKEEGAKLLTGGERAILDGDLAEGYYVTPTVFEGDNSMRIFQEEIFGPVVSLTGFDEEADALKVANDTLYGLGAGVWTRDGAQAYRAGREIQAGRVWTNCYHLYPAGAAFGGYKQSGIGRENHKMMLDHYQQTKNLLVSYSPDALGFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6E0</accession>
    <name>A0A0Q8V6E0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sulfurtransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15345</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896545.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51481">
        <property type="protein sequence ID" value="KRC51481"/>
        <property type="gene ID" value="ASE19_15345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2056793at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="96"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="146" mass="16077" checksum="56B3E66035459B7F" modified="2016-01-20" version="1">MQREQKRQVARPAPRYDGVDALLADARSRLDRITARAAFQELITLDALIVDIRPAAQRAAEGEVADWLPLRVIERNVLEWRFDPRSDARIPEATYDRRVIVLCQEGYTSSLAADALQGLGIHRATDVIGGFAAWRAAGMPVAGVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6J6</accession>
    <name>A0A0Q8V6J6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Polyketide cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11690</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894975.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53045">
        <property type="protein sequence ID" value="KRC53045"/>
        <property type="gene ID" value="ASE19_11690"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1644255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12680">
        <property type="entry name" value="SnoaL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="30"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="171" mass="18818" checksum="AD38ECFCDF672F4A" modified="2016-01-20" version="1">MTGTPTATFTEGEIADAYAAFHEKVAVMATTGDWTGYADLFTPDAEYVEHAMGTFRGRDEIRAWAVRTMTSYPGRVMTGFPISWQVVDADAGRLVCEVLNPMPDPGDGTMLTEPNITIMTYAGDGLFSREEDVYNPLRFHAMAQRWARIAAAHGNADEDVLAWLDRFGGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6S3</accession>
    <name>A0A0Q8V6S3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">YCII domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11075</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the YciI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894872.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52939">
        <property type="protein sequence ID" value="KRC52939"/>
        <property type="gene ID" value="ASE19_11075"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2051456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005545">
        <property type="entry name" value="YCII"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03795">
        <property type="entry name" value="YCII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YCII" evidence="2">
        <location>
            <begin position="4"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="125" mass="13711" checksum="D25AEB0A17C6460E" modified="2016-01-20" version="1">MPRFMGFVRMEEGQGMPPQALFDAMDVYIGEQAQQGHFLDGGGLFGLEDAVNFVVRTGEVTRVDGPYAEAREAVGGWALLQYDSLEEAIAGQEEFAQLHAKHWPECTMVATLRQVPDEPPTPADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6U7</accession>
    <name>A0A0Q8V6U7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">FAD-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12320</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895084.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53157">
        <property type="protein sequence ID" value="KRC53157"/>
        <property type="gene ID" value="ASE19_12320"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1741250at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="18143" checksum="8E4100A1EB3D5C71" modified="2016-01-20" version="1">MTATTTRYDGELLRGAQWRGRAFTGLSVAVIAPGREAAVIVPEVVRTARAVKVFQEEPDWLLPLPLPLPRALAVPAARLSLRLRVRDPWTRRRLTPDARFNRHRPRVDGRYYAALQEPHCTLISWPVYALVPGGLRSAEGIEHRVDCIILGTTAAHREDLLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V734</accession>
    <name>A0A0Q8V734_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12905</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895715.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53253">
        <property type="protein sequence ID" value="KRC53253"/>
        <property type="gene ID" value="ASE19_12905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1114675at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="253" mass="26077" checksum="5892415E7327304F" modified="2016-01-20" version="1">MTDAPAELVHLDVADGVATITLDSPHNRNALSRQLVTELIAHLATVDAADDVRVVLLKSSGRVFCSGADLSEAATVPMQEGARAIVGVQRQIVALSKPVVTVVEGAARAGGIGIVAASDVVVVASDATFALTEVKLGLTPAVISLTVFPRLTPRGLAWTALGGEVFTGAEAADFGLATFAVPADALDAKVAEVVGQLATGAAQGLRETKKLLAADLLERIDTKGEELVELSARLFGSDEAREAMTAFLTRKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7I0</accession>
    <name>A0A0Q8V7I0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17265</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50337">
        <property type="protein sequence ID" value="KRC50337"/>
        <property type="gene ID" value="ASE19_17265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="591335at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008323">
        <property type="entry name" value="UCP033563"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36454">
        <property type="entry name" value="PTHR36454"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06245">
        <property type="entry name" value="DUF1015"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="359" mass="38967" checksum="17578AE71E1AA301" modified="2016-01-20" version="1">MLSPGRVGNPTTGRAFARPYKDVSARLLRWQARGYVRQDAAPALYLHEYTSAGMTVRGLVGALDVSRRATRPADRAVLPHEGIHPAQADDLADRMAEMELNPAPILLVHRGTDRLRTVLAEVARSSPQHAFTDRSEQQHRIWAIRDDETLAAIAAELADSRALIADGHHRYAAYLRLQRRLATDTPGPATTDFGLAMLVDQDTTPLFLGPIHRTLAGTSLDDLRDAVQSVGLGYQDHTQAEAVAALSATRLAATDGKQWAVVSLNPSLREAAVETLHRRIVPALPHGPSSIAYHHSVDDALGSARTDAISVLMPAPSVDLVLEIAEADRLLPEKATSFQPKPSLGVLIRSLRDESPDTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7I6</accession>
    <name>A0A0Q8V7I6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Nitrite reductase small subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_12510</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895117.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53190">
        <property type="protein sequence ID" value="KRC53190"/>
        <property type="gene ID" value="ASE19_12510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1681886at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008942">
        <property type="term" value="F:nitrite reductase [NAD(P)H] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042128">
        <property type="term" value="P:nitrate assimilation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017881">
        <property type="entry name" value="NirD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012748">
        <property type="entry name" value="Rieske-like_NirD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40562">
        <property type="entry name" value="PTHR40562"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13806">
        <property type="entry name" value="Rieske_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02378">
        <property type="entry name" value="nirD_assim_sml"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0534">Nitrate assimilation</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rieske" evidence="5">
        <location>
            <begin position="11"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="130" mass="13772" checksum="823A9D6FB61CD94C" modified="2016-01-20" version="1">MTTEAQTGTETVVCRLDQIRPESGVTALVDGSAVAVFRTYDDEVFALSNFDPFGKASVLSRGIVGTRTVVAEAGEEQVPFVASPLLKQPFDLRTGVCLDDPTVAVPSYDVRVVDGVVLVGAARPPQCETL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V866</accession>
    <name>A0A0Q8V866_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13430</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895810.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53348">
        <property type="protein sequence ID" value="KRC53348"/>
        <property type="gene ID" value="ASE19_13430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052699">
        <property type="term" value="P:ergothioneine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024775">
        <property type="entry name" value="DinB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017806">
        <property type="entry name" value="EgtB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005532">
        <property type="entry name" value="SUMF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042095">
        <property type="entry name" value="SUMF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12867">
        <property type="entry name" value="DinB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03781">
        <property type="entry name" value="FGE-sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="SSF56436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03440">
        <property type="entry name" value="egtB_TIGR03440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DinB_2" evidence="2">
        <location>
            <begin position="15"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="FGE-sulfatase" evidence="1">
        <location>
            <begin position="181"/>
            <end position="421"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="427" mass="48060" checksum="E6925006567E9B8F" modified="2016-01-20" version="1">MTATTWTADSLLTRFDEVRSHTELLAAPLSPEDQTVQSMPDVSPTKWHRAHVTWFFETFLLADNEAGFAPFQDKYWFLFNSYYEAVGPRYNRAERGVISRPGAHDVGVYRANVDDRVRDLVSTLDQGTIDKLAGTIELGFHHEQQHQELLLMDIKHVLSLNPLLPAYAGRPAPSVDATELGWVEVEGGLVEIGHRDAGFSFDNELPLHRVHLEPYRLADRLVTNGEWRAFMDDGGYRRPELWLSDGWAQVRTHGWQAPFYWTEVDGVWFEHTLHGTFPVDPALPVSHVSHYEADAYAAWAGKRLPTEAEWEHAVRTDEQEVPDGANLADTETWHPRAAGALTGRLRQAFGDCWEWTSSAYLPYPGFHPAEGAIGEYNGKFMSNQMVLRGGCALTPPGHARASYRNFFPPGARWALSGVRLADGGEPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V885</accession>
    <name>A0A0Q8V885_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_16175</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893614.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50146">
        <property type="protein sequence ID" value="KRC50146"/>
        <property type="gene ID" value="ASE19_16175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1155802at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04590">
        <property type="entry name" value="CBS_pair_CorC_HlyC_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002550">
        <property type="entry name" value="CNNM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044751">
        <property type="entry name" value="Ion_transp-like_CBS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005170">
        <property type="entry name" value="Transptr-assoc_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03471">
        <property type="entry name" value="CorC_HlyC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01595">
        <property type="entry name" value="DUF21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01091">
        <property type="entry name" value="CorC_HlyC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51846">
        <property type="entry name" value="CNNM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0129">CBS domain</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="CNNM transmembrane" evidence="10">
        <location>
            <begin position="1"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="9">
        <location>
            <begin position="221"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="9">
        <location>
            <begin position="285"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC50146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="453" mass="48307" checksum="01F94686AB8A2AC2" modified="2016-01-20" version="1">MTAWLLLGLAILLVLACGLFVAAEFALVTVDRNQVDRDAAAGDATAIGVQKALRALSTQLSGAQVGITITNLAIGFLAEPAIAELLRGPLEDAGVSEGAVGPIAVTTGLVLSTLLTMLIGELVPKNVAISLPYATARLTQGPMRGFTAVARGPIKVLNGSANAIVRRFGIEPQEELRSARSVTELASLIQRSADEGTLDADTAELMERSVEFGTRTAGEIMTPRVRTRSLEINDRASAVIALARETGNSRFPVLDDTDAVVGTVHVKNAVALPLHERATTKVKHLMAKPIVVPDSLRLDPLLALLRADGFQMAIVLDEYGDHAGIVTLEDVIEEIVGDIADEHDRLGSRGRLRRDGTWSLSGLLRPDEVEDLTGVQLPENEDYDTVAGLVLKVLGRIPSTGDHAVVPLPVVGDDEDVPPRRAVLTVDHMDGLRIDRLTLRVEDVPHEEDPTDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8L7</accession>
    <name>A0A0Q8V8L7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Tyr recombinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_17075</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893775.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50306">
        <property type="protein sequence ID" value="KRC50306"/>
        <property type="gene ID" value="ASE19_17075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="3">
        <location>
            <begin position="158"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="361" mass="40617" checksum="2727838372EDFAA8" modified="2016-01-20" version="1">MATIEKRGASYNVRYRVEGKSRRKAFTRHQDALTFKAQVETEQATGRGIDPVSARTTFKAFYPLHVKSRVNVKQVTLTTSKTLYDNHVNRWDDWPLERITQAAVQDWIASMVLEARVSASTIRACYKEFSAAMKTAVAGRYIRETPCVGINLPTVDRDPMVVLDHAEIHQLAEAINPRFKALVLFLAYSGFRIGEASALRWSDVDLLKGTATVHNTVTEVVGKGLVLERPKTRAAHRTVPLPQHVTEALKEHQSRFGGQWVFTTSNGTQVNPRTFNRRAFATALTKAKLSCRVHDLRHTAISLWIRQGVDLPRIKAWAGHTDAAFTLNTYAKFFPTDDTGIMDMLNKNIANALEQSKNQEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8U5</accession>
    <name>A0A0Q8V8U5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Luciferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14470</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896968.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53535">
        <property type="protein sequence ID" value="KRC53535"/>
        <property type="gene ID" value="ASE19_14470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022290">
        <property type="entry name" value="CHP03858_lucif-like_mOase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03858">
        <property type="entry name" value="LLM_2I7G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="22"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="350" mass="38489" checksum="D807E4112698EC73" modified="2016-01-20" version="1">MTDLVFGLDTFGDVTLDPTTGERLDHPQVIRNVVEQAVLADQVGVDVFGIGEHHRADFAVTSPEMVLATIAARTERIRLGTAVTVLSSDDPVRLYERFATLDALSDGRAEITMGRGSFTESFPLFGFDLAHYDQLFSEKIDLWAALQGEQEVTWDRGELRPPLRNARLYPTTERGSIPTWIGVGGSPESVVRAATYGFPLAIAIIGGEPARFAPFTDLYRRALKEFDRPALPIAVHSPGFVADTDEEARESMYPHFQESRNRIGAERGWGPGTRAQYDAEVDDGALFVGAPETVARKIAKAVQDLGIQRFDLKYSNGAMPHPQLLHSIELFGTQVIPRVRELLAEAPVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9M0</accession>
    <name>A0A0Q8V9M0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07650</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895377.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53946">
        <property type="protein sequence ID" value="KRC53946"/>
        <property type="gene ID" value="ASE19_07650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2051039at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="127" mass="15033" checksum="327ACABFE09C5D91" modified="2016-01-20" version="1">MFTLHTTSYRHFNPRMGTAIRTSIGHPRWRLPYALDIKLTELMPSRAMLNLPYGEYEDRYLRQLEEVGVEHLEQRFQAIAVAVADTRLVLLCFESLAEPGDWCHRRMFADWWEVQTGEPVRERRGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Q6</accession>
    <name>A0A0Q8V9Q6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CarD family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14980</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_028654642.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51392">
        <property type="protein sequence ID" value="KRC51392"/>
        <property type="gene ID" value="ASE19_14980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1942592at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036101">
        <property type="entry name" value="CarD-like/TRCF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003711">
        <property type="entry name" value="CarD-like/TRCF_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042215">
        <property type="entry name" value="CarD-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02559">
        <property type="entry name" value="CarD_CdnL_TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01058">
        <property type="entry name" value="CarD_TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141259">
        <property type="entry name" value="SSF141259"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CarD_TRCF" evidence="1">
        <location>
            <begin position="2"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="161" mass="18280" checksum="1B1CDD40853E0D5A" modified="2016-01-20" version="1">MTFTVGETVVYPNHGAAVIENIEMRTIKGQERQYLVLRIVAQQDLVVRVPADNLDLVGVRDVVDKDGLDRVFGVLRAEHVEEPTNWSRRYKANLEKLHSGDVMKVAEVVRDLWRRERDRGLSAGEKRMLAKARQILVSELALCENTNEDKAETILDEVLAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA14</accession>
    <name>A0A0Q8VA14_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">PpiC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_08930</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895597.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54165">
        <property type="protein sequence ID" value="KRC54165"/>
        <property type="gene ID" value="ASE19_08930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1838755at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000297">
        <property type="entry name" value="PPIase_PpiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13145">
        <property type="entry name" value="Rotamase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50198">
        <property type="entry name" value="PPIC_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0697">Rotamase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="domain" description="PpiC" evidence="4">
        <location>
            <begin position="188"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="327"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="358" mass="37666" checksum="FB888D086CB9F95F" modified="2016-01-20" version="1">MPELFSRPSPRLALAGVAVVLLTVIGGGAWWMRRGLPDDVAVRVGSTDVTVGELRDRMATVEALYGVAVPDDDSDADAFWRDAAHSVAVGLVLDRAADEADVSISGQEVDASLQQVISSFFGTGTAGEAAFTQALGTAGTSEKAVRDELRRQLEVNALFASVTSDVASPSAADVASAYDERRCTLRLPEKRRLRNIVVASEDDARDALRRLRRGESFASVVAALSIDASTRDTAGDLGLVARSDLEAGYAKAAFGAATAQLYGPVRGEFGWNVGRVEAVRAGRVPTLEEARDGLRQKLFSEGQSTVWRRWLGKELKDADVRYAADYTPKDPLALPSDGPGATPPGGTSSGGSAPAAGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA47</accession>
    <name>A0A0Q8VA47_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Peptidase S1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_08175</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895470.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54038">
        <property type="protein sequence ID" value="KRC54038"/>
        <property type="gene ID" value="ASE19_08175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="741829at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009403">
        <property type="term" value="P:toxin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003825">
        <property type="entry name" value="Colicin-V_CvpA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02674">
        <property type="entry name" value="Colicin_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="56"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="99"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="394" mass="40778" checksum="5831FAA3EEE61116" modified="2016-01-20" version="1">MNVLDWLLVLLVLAYALSGYWQGFVTGAFATVGLLAGGLAGIFLAPLLLSKLDPSLAVSLGALFIVILCASLGQALLQYAGARVRERITWQPARALDAVGGALLSALAVLLVAWALGVAISGTRIGSVTSMVRSSVVLGKVNDALPDAAPNVLQAFNNVVGTGFFPRYLEPFAPEQIVEVQPGPSNLPRTAAVRAVRPSVVKIRGGNKCGRGVEGTGFVYAPDRVMTNAHVVAGVQDPEVSIGGGTELARVVYYDRKLDIAVLALDTGDAPVLAFDQTTEAEDPIAIIGYPQDGPFDVQTGRVRAMQNLRSPDIYGAGTVVREVFSLRGLVRPGNSGGPIVTPQGKVAGVVFAASVTDPETGYALTAKQVAETAERGAAAGSDGREADTGNCAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAG5</accession>
    <name>A0A0Q8VAG5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Cytochrome aa3 subunit 3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_08510</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the cytochrome c oxidase subunit 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895650.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54218">
        <property type="protein sequence ID" value="KRC54218"/>
        <property type="gene ID" value="ASE19_08510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1502742at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004129">
        <property type="term" value="F:cytochrome-c oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019646">
        <property type="term" value="P:aerobic electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024791">
        <property type="entry name" value="Cyt_c/ubiquinol_Oxase_su3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000298">
        <property type="entry name" value="Cyt_c_oxidase-like_su3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035973">
        <property type="entry name" value="Cyt_c_oxidase_su3-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013833">
        <property type="entry name" value="Cyt_c_oxidase_su3_a-hlx"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11403">
        <property type="entry name" value="PTHR11403"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00510">
        <property type="entry name" value="COX3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81452">
        <property type="entry name" value="SSF81452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50253">
        <property type="entry name" value="COX3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="26"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="66"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="98"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="136"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="180"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="domain" description="COX3" evidence="9">
        <location>
            <begin position="26"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00031400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC54218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="200" mass="21775" checksum="3F2FBF598851895E" modified="2016-01-20" version="1">MATLHAPPGSGSPAPRRGGRIPGEEGLWVFILGDMAIFALFFGTIAVTRGQDPAMFDAAQQHLHPWLGIVNTALLLTGSLLVVHGVRRLGDGTAASSRLFALTLVCALGFVAIKVAEYSLLVGEGHTGATNDFFMYYFVFTGIHLAHLVIGTVVVAFLLRVARTPEPTEGQRRFVECGGIYWHMVDLLWLVLFPLLYLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAI0</accession>
    <name>A0A0Q8VAI0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Acetoacetate decarboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_09220</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894549.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52611">
        <property type="protein sequence ID" value="KRC52611"/>
        <property type="gene ID" value="ASE19_09220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="978501at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010451">
        <property type="entry name" value="Acetoacetate_decarboxylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023375">
        <property type="entry name" value="ADC_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06314">
        <property type="entry name" value="ADC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160104">
        <property type="entry name" value="SSF160104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0704">Schiff base</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="273" mass="29810" checksum="53FB7D69BE2E803E" modified="2016-01-20" version="1">MNNTKGFFYPRTATGQSSVIPSPPWYYSGDLLTVEYRTDPGRVAELLPEPLELAPEDPGAVALIWADWQSCSGSREELLDPVRSQYKEAFVVVRCAYEGVTYSRCVHIWVDKDFAIARGIHQGYPKKLGSMWQTRPHPFSQGAPQVAAGGVFGATLAAGDRRLAQAVLTLKEESPTNGFVNGHPMAHHRVYPGIARNSPDAYGELIASGGASFEGGPTWTGDVEVELFESPTEELHRLPVQEVIGGYYRQVGVVWDGGSTLATNTDGTWEPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAQ1</accession>
    <name>A0A0Q8VAQ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GNAT family acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54187">
        <property type="protein sequence ID" value="KRC54187"/>
        <property type="gene ID" value="ASE19_06855"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="194" mass="21859" checksum="71E4C3B5BF188CEE" modified="2016-01-20" version="1">MISGTDPVVRLRPISLRDARAWRSARRRNALWLARWDATAPPGADARPMSFRALVKRLRKSARQGTTYPFVVEVDGRFAGQVSVNNIVRGSAQFASVGYWIDQEFAGRGVIPRAVAMVIDHCFFTAGLHRIEICIRPENTNSLRVVEKLEIREIGYAPLFLHIDGEWRDHRIFAVTREEAPRGVLVRLDAPATG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAQ2</accession>
    <name>A0A0Q8VAQ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17205</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893796.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50327">
        <property type="protein sequence ID" value="KRC50327"/>
        <property type="gene ID" value="ASE19_17205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1955392at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="105" mass="11771" checksum="CA1AFB4063983DD2" modified="2016-01-20" version="1">MPRRVSLPAADDLFRATSEPAVRAVPDPPQEAQKGPSGRIRHDEKITVYITSDELMELERARLTLRGEHGLAVDRGRLVREALHLVLADLETAGEESPLVRRLRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VB00</accession>
    <name>A0A0Q8VB00_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11715</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894979.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53049">
        <property type="protein sequence ID" value="KRC53049"/>
        <property type="gene ID" value="ASE19_11715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="972769at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ADH_N" evidence="2">
        <location>
            <begin position="24"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="ADH_zinc_N" evidence="1">
        <location>
            <begin position="175"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="386" mass="40829" checksum="4EBE23643EE49C72" modified="2016-01-20" version="1">MRAVVCHQAELTVQDLPDLTPSAGQLLLSVERCGICGSDLHARTHCDETAADVAELGYDAFMRSTDHVVMGHEFVGTVLDHGSRTSRRQFPVGSRVVALPVLKAGDSVHLTGLSEQASGGYAEQVLVTASMTMRVPDALDADAAALTEPMAVALHAVRRGEVGARDTAVVIGCGPIGLAVIAMLKATGVRHVIASDFSPGRRTLAEQMGADVVVDPAVDSPWASFAESKRYLTEAIALAELGIDAMDKLRAVPLLPWAHVMRAADKLGATPRGPVVFECVGVPGMIEHVVANAPLLTRVVVVGVCMGQDSFRPSMAINKEVDLRFAFAYDPSEFHQTLQWIASGKVDVRPLITGTVGLDGVAGAFTDLADPERHAKILVDPALPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBU9</accession>
    <name>A0A0Q8VBU9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ANTAR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_13280</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895783.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53321">
        <property type="protein sequence ID" value="KRC53321"/>
        <property type="gene ID" value="ASE19_13280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1958442at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005561">
        <property type="entry name" value="ANTAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012074">
        <property type="entry name" value="GAF_ANTAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03861">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036625">
        <property type="entry name" value="GAF_ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01012">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50921">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="ANTAR" evidence="3">
        <location>
            <begin position="167"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="239" mass="25358" checksum="43B87A18424F553C" modified="2016-01-20" version="1">MTSSVPLDQAAVAFQQLAQLVYQGESFAGIYDEICRIAVQVVPGCDHACITTISAGRSPTLEATTDDVAALIDRTEWEVREGPCVDAILTDRFDCDPDITRNPTWPRLAERVLAQTPVRGMVGYRISAGPQKVGALNLFSDTAGALTQEGAEVGAILASFASVAITAAREKTGAQNLLEGLINNREIGKAVGVLMVTEGISDAEAFEKLRTASNHLNVRLAEVARRVVADSDVGQTASD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCG8</accession>
    <name>A0A0Q8VCG8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Enolase</fullName>
            <ecNumber evidence="8">4.2.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">2-phospho-D-glycerate hydro-lyase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">2-phosphoglycerate dehydratase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8 13" type="primary">eno</name>
        <name evidence="13" type="ORF">ASE19_04890</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>(2R)-2-phosphoglycerate = H2O + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:10164"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58289"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="EC" id="4.2.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="8">The covalent binding to the substrate causes inactivation of the enzyme, and possibly serves as a signal for the export of the protein.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 4/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Secreted</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Cell surface</location>
        </subcellularLocation>
        <text evidence="8">Fractions of enolase are present in both the cytoplasm and on the cell surface. The export of enolase possibly depends on the covalent binding to the substrate; once secreted, it remains attached to the cell surface.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the enolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.11" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894275.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54806">
        <property type="protein sequence ID" value="KRC54806"/>
        <property type="gene ID" value="ASE19_04890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="533698at2"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00187"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009986">
        <property type="term" value="C:cell surface"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000015">
        <property type="term" value="C:phosphopyruvate hydratase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004634">
        <property type="term" value="F:phosphopyruvate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03313">
        <property type="entry name" value="enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00318">
        <property type="entry name" value="Enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000941">
        <property type="entry name" value="Enolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036849">
        <property type="entry name" value="Enolase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029017">
        <property type="entry name" value="Enolase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020810">
        <property type="entry name" value="Enolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020809">
        <property type="entry name" value="Enolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020811">
        <property type="entry name" value="Enolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11902">
        <property type="entry name" value="PTHR11902"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00113">
        <property type="entry name" value="Enolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03952">
        <property type="entry name" value="Enolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001400">
        <property type="entry name" value="Enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00148">
        <property type="entry name" value="ENOLASE"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00002">
        <property type="entry name" value="enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01192">
        <property type="entry name" value="Enolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01193">
        <property type="entry name" value="Enolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51604">
        <property type="entry name" value="SSF51604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54826">
        <property type="entry name" value="SSF54826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01060">
        <property type="entry name" value="eno"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00164">
        <property type="entry name" value="ENOLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="7 8 13" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Enolase_N" evidence="12">
        <location>
            <begin position="4"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="Enolase_C" evidence="11">
        <location>
            <begin position="138"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8 10">
        <location>
            <begin position="361"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8 9">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8 9">
        <location>
            <position position="334"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="154"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="241"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="282"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="309"/>
        </location>
    </feature>
    <feature type="binding site" description="covalent; in inhibited form" evidence="8">
        <location>
            <position position="334"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="385"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00318"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001400-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001400-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM01192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC54806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="425" mass="44706" checksum="3C442629E322E694" modified="2016-01-20" version="1">MAAIEAVGAREILDSRGNPTVEVEVLLEDGSFARAAVPSGASTGAFEAVELRDGGDRYVGKGVQQAVTAVIQVLGPAIEGLDAADQRLIDQTLLEADGTPNKAKVGANAILGVSLAVARAAADSADLPLYRYVGGPNAHLLPVPMMNILNGGSHADSNVDIQEFMIAPIGAPTFREALRVGAEVYHALKSVLKDKGLATGLGDEGGFAPNLESNRAALDLIGEAVAKAGYELGKDVVLALDVAASEFFEEGGYAFEGATKSADEMIAYYADLVANYPIVSIEDPLNEDDWDGWKAITDALGDKTQLVGDDLFVTNVERLQRGIEGGQANALLVKVNQIGSLTETLDSVELAHRNGYRCMMSHRSGETEDTTIADLAVATNCGQIKTGAPARSERVAKYNQLLRIEDELGDAARYAGAAAFPRYKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCL0</accession>
    <name>A0A0Q8VCL0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Hemin ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_05895</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894100.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54974">
        <property type="protein sequence ID" value="KRC54974"/>
        <property type="gene ID" value="ASE19_05895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1752365at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="4"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="265" mass="28509" checksum="78EB4DFBB4BB9B53" modified="2016-01-20" version="1">MNALTTRGVTLSYGHRPVLDAVDLDVRRREVLALVGPNGAGKSTLLAVLAGDVVPDEGVVELDGRPLREWRLRTMARRRAVLTQEHRISFPFPAADVVRMGRAPWRGLPEEDEDDRVVAEAMATTDVGRLAHQPFSLLSGGEKGRTSFARVLAQRTGILLLDEPTAALDIGHQEAVLARARAEAAGGAAVVVVLHDLSLAAAWSDRVALLHHGRVTAEGTPAAVFTAPLLSLVYDHPIDVLTHPATGELLVLPDRRTPLSREETA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCS4</accession>
    <name>A0A0Q8VCS4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Sulfate transport system permease protein CysT</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_09955</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.</text>
    </comment>
    <comment type="function">
        <text evidence="8">Part of the ABC transporter complex CysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">The complex is composed of two ATP-binding proteins (CysA), two transmembrane proteins (CysT and CysW) and a solute-binding protein (CysP).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53609">
        <property type="protein sequence ID" value="KRC53609"/>
        <property type="gene ID" value="ASE19_09955"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015419">
        <property type="term" value="F:ABC-type sulfate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011865">
        <property type="entry name" value="CysT_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005667">
        <property type="entry name" value="Sulph_transpt2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30406">
        <property type="entry name" value="PTHR30406"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30406:SF8">
        <property type="entry name" value="PTHR30406:SF8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00969">
        <property type="entry name" value="3a0106s02"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02139">
        <property type="entry name" value="permease_CysT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0764">Sulfate transport</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="44"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="78"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="112"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="161"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="217"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="10">
        <location>
            <begin position="40"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU366001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC53609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="247" mass="26085" checksum="4FC51000A1A5C2C0" modified="2016-01-20" version="1">MVWFSVLVLIPLAAVIGAAAAGGWGAFWDTLTDAQTFAALRLTVVEALLVTLANAVIGTIVAWVLVRDQFFGKRLLDVVIDIPFALPTIVAGLILLSLWGPDSPVGVNIVNTRQGIFLALLFVTLPFVVRTVQPVLIELDADVEEAAASLGASRFTTFRRIILPSLVPAIAAGSSLGFARAISEFGSLVLISGNTPYETEVASLKILKFLEGDNQDGAAAVAVLLLIVAVLTIVALDVISRRVARRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCZ7</accession>
    <name>A0A0Q8VCZ7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA helicase</fullName>
            <ecNumber evidence="3">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_04545</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the helicase family. UvrD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894422.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55118">
        <property type="protein sequence ID" value="KRC55118"/>
        <property type="gene ID" value="ASE19_04545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="137860at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013986">
        <property type="entry name" value="DExx_box_DNA_helicase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014017">
        <property type="entry name" value="DNA_helicase_UvrD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000212">
        <property type="entry name" value="DNA_helicase_UvrD/REP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010997">
        <property type="entry name" value="HRDC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002121">
        <property type="entry name" value="HRDC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044876">
        <property type="entry name" value="HRDC_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014016">
        <property type="entry name" value="UvrD-like_ATP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070">
        <property type="entry name" value="PTHR11070"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00570">
        <property type="entry name" value="HRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13361">
        <property type="entry name" value="UvrD_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00341">
        <property type="entry name" value="HRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47819">
        <property type="entry name" value="SSF47819"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50967">
        <property type="entry name" value="HRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51198">
        <property type="entry name" value="UVRD_HELICASE_ATP_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51217">
        <property type="entry name" value="UVRD_HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 10" id="KW-0347">Helicase</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UvrD-like helicase ATP-binding" evidence="8">
        <location>
            <begin position="12"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="domain" description="UvrD-like helicase C-terminal" evidence="9">
        <location>
            <begin position="294"/>
            <end position="545"/>
        </location>
    </feature>
    <feature type="domain" description="HRDC" evidence="7">
        <location>
            <begin position="614"/>
            <end position="693"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="33"/>
            <end position="40"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC55118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="693" mass="75807" checksum="10ED055EDFEB561A" modified="2016-01-20" version="1">MADADSIERLLSALDPEQRQVAETLRGPVRVLAGAGTGKTRAITHRIAHGVLAGVYAPTEVLAVTFTTRAAGELRQRLRQLGAPGVQARTFHSAALRQLRYFWPHVHGTELPELTESKLGMMAAACRAIGVRTDQALLRDLASEIEWAKVSNVGPDDYARLAPGKGRAVADQTPETVARVFASYEDVKRAQGRMDMEDVLLLTAGVLATDERVAAQVRRQYKWFVVDEFQDVSPLQSALLDLWLGGRDELCVVGDPAQTIYSFAGADAGYLRDFPKRYPGTTSIELVRNYRSTPQVVGDANRLLAGTASAGVELRSQHAAGSAVRYVGEPDEVAEARTVADRIARLHRAGTPYGEMAVLFRINAQSETFEDALTDRAIPYVIRGAARFFERREVREAVTRLRGAARSGEADGHPWVTVVRDVLSGMGWTTEPPTARGQARDRWESFQALVDQAEDFATERGIEASVGTFVDDLDRRAAEQHAPTADGVTLATFHAAKGLEWDAVFCCGVQDGTVPITYASQEGAPPGAVEEERRLLYVGMTRARKELMVSWAAARNPGQAPRRQPSRFLVPMLPASQQPQATRGRTKVARCRDCLQPLSSAAEKKRGRCAHHPVRYDEALFDRLKAWRLETAKEAGEDGKPLPAYVVFTDATLELIAEQKPTSIKALAKVNGVGPNKIERYGEAVLALVSEKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD16</accession>
    <name>A0A0Q8VD16_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">5-carboxymethyl-2-hydroxymuconate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09205</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894546.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52608">
        <property type="protein sequence ID" value="KRC52608"/>
        <property type="gene ID" value="ASE19_09205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="775108at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.850.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011234">
        <property type="entry name" value="Fumarylacetoacetase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036663">
        <property type="entry name" value="Fumarylacetoacetase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01557">
        <property type="entry name" value="FAA_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56529">
        <property type="entry name" value="SSF56529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAA_hydrolase" evidence="2">
        <location>
            <begin position="47"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="263"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="286" mass="31353" checksum="929F6DCD2786F85F" modified="2016-01-20" version="1">MTTEYRRILLDGNAVDVRREGETLVAGDGRTVAIADAVHLPPVTPSKIVCVHLNYSSRVEEMLTTLPPAPTYFHKPVSALNAHDSAVVRPQGCKWLNYEGEIAIVIGRTARNISPEEAGDYIRGYSVGNDYGLHDFRDTDSGSMLRVKGADTLCPIGPGIVEGWDFRDKQIRTIVNGEVRQDGNTREMKWDMHYLVADIARTITLHPGDILLSGTPAISRTVHPGDVVEVEVEGLGTLRNHIVEGPTPIRSDVGAQPTESEEVLSTAQGGDWEFRGIRKPDLSNTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD43</accession>
    <name>A0A0Q8VD43_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">30S ribosomal protein S8</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsH</name>
        <name evidence="6" type="ORF">ASE19_06515</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 30S ribosomal subunit. Contacts proteins S5 and S12.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uS8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894487.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55080">
        <property type="protein sequence ID" value="KRC55080"/>
        <property type="gene ID" value="ASE19_06515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1692188at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01302_B">
        <property type="entry name" value="Ribosomal_S8_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000630">
        <property type="entry name" value="Ribosomal_S8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035987">
        <property type="entry name" value="Ribosomal_S8_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11758">
        <property type="entry name" value="PTHR11758"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00410">
        <property type="entry name" value="Ribosomal_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56047">
        <property type="entry name" value="SSF56047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="134" mass="14563" checksum="F9DD6FCEEA9DDB7B" modified="2016-01-20" version="1">MTMTDPIADMLTRLRNANQAYHDAVTMPYSKLKEGVAEILKQEGYITSYGVADNENGVGKLLTVTLKYGRNRERSIAGVRRISKPGLRVYAKHTGLPKVLGGLGVAIISTSQGLLTDRQANQKGVGGEVLAYVW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDB3</accession>
    <name>A0A0Q8VDB3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04420</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894425.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55116">
        <property type="protein sequence ID" value="KRC55116"/>
        <property type="gene ID" value="ASE19_04420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="961884at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="9"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="412"/>
            <end position="487"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="511" mass="54732" checksum="889496CA8A3C33C8" modified="2016-01-20" version="1">MTNVVRNIWEHAESTPEHIALRVDDQAWSYAELQANVARAALGLKDRGVNRGDRVLMVVPSSAEFVFVYYGILSIGATAVTVNTLCTAPEIEYYLSDAQCTLAVGYDDTSDALSVAAARVTTPTWILSPGSVARDVTDETGGLPEYVDLDDSDSAAILYTSGTTGRPKGAVLSHRNLISTAQAASIGLEVGPDDRMGTALPLFHVFGQVSAMGAIHYVGGGLSLLRRFDAEAMLKLAVSHRLTAMAGVPTMWNEMLHAETSYTPADLAGLRLCLCGGAPLPTAVKDAFLARFGAHMVDGYGLTETSAAATCGSVHHQTKEGSVGRAVHGTRIAILDNDLQPAPLGEVGQVAVDGPGVMREYWKRPEATASVRSGPWFLTGDLGTMDADGDLWIVGRLKDLIIRGGYNVYPTEIEDVLYRHPSILECAVVGVPDDRLGEEVAAVLVPQQGSDIDLVELREWLAERLAAYKVPRIFQLSEGLPKGTTGKILKREIDQQDLLSDGVRPPKPART</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDF1</accession>
    <name>A0A0Q8VDF1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07020</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895264.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53833">
        <property type="protein sequence ID" value="KRC53833"/>
        <property type="gene ID" value="ASE19_07020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1309950at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="18"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="191" mass="20389" checksum="48AA7773D3A59E59" modified="2016-01-20" version="1">MSSQVFEAPRQGLNPRQAETVEKLLVAGLEELRAVGHEALTVRTVAQRAGVSPATAYTYLASKNHLFAELFWRHLTAGGPARASGTTALERLQATMRALTARIVEEPELAAAVTPALLGTDPDVARLRLRIGAEFLARFEAALGDKADPAVLEVLVLTFSGALLQAGMGLMTYDEIAERLVSAADVILRGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDG0</accession>
    <name>A0A0Q8VDG0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15385</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896528.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51463">
        <property type="protein sequence ID" value="KRC51463"/>
        <property type="gene ID" value="ASE19_15385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1639867at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="550" mass="55903" checksum="F2E4F38B69D84B38" modified="2016-01-20" version="1">MVRRDVPGSGRAGRLQRGMVLAAFGSLALGGLQLGLASGSSAEPAPVEDPAASSGARTVVLTATGDTWVQSGLTPKSQPASPELRVGTKNSGVNQAKSYLRFDTTALGDVQPSWVVDAKVGLSNFSAGSCSGNAIRMSQVTKAWSLTTMTWGTQPTVATAGASTNDKARGFTGCVAEGVVDFDATAIVKAWTGGAANHGVQLASVKPGANGSYRLYRSLENSDPAKAPTLTVTISAPPAIPTGLAVTPNEYGNFVTSRTPTLSAVVSDPDGGEVKGHFEVLKGTTLVWSGSSAAVASGEAATVDVPAGTLDEGAYTVNVWGVDDIGIRSAFAASKSITVDTVVPTVTLTSAQFTDGAWTPTVPASDTITMDGSADTGAFHLDYDGVTNSVGANTSGDKVQTYTPAPGWHVLKVTPVDRAGNVGEPVTFSYGTGAPALAKPTIWTASSTSFPVEFSGPAGATGATLEWRVAGTTPWRTAAKLTTSDGTAWTGAVLGTGRSTTGVLTWNATQETYGTGKLTGPVLLEVRGCFQYGASPASCTGSTYVSLTKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDH8</accession>
    <name>A0A0Q8VDH8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09660</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894627.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52689">
        <property type="protein sequence ID" value="KRC52689"/>
        <property type="gene ID" value="ASE19_09660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1247435at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359935" evidence="2">
        <location>
            <begin position="31"/>
            <end position="707"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="206"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="210"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="707" mass="73618" checksum="C4BC660225002C2B" modified="2016-01-20" version="1">MRTLLRTVVALLLGCTASLGLAAAPSTAAATVTVRSLTAYPQVGGELTLLARADGTTAPSPADVRVERWSVGPTWTRVDSDARVLSDGSLAIAVPLKGAMGVTATAGLRVVTPAATSDRLDVYVFADGSPTMTSAPAPVVTGTLTVGSVLTATTGTWAPTPSFIGLQWNRNGVKTSTGGPTYTVTAADLGQLITVTAVAFPPAGSGGSFTARDSRPTQPITRGTFTAPQPLVVGRAAVGETLRADTSAWRPTPVTTSYRWTRNGTAIAGASALTYTVTAADAGAGLAVSVRGEAENVEPVEVTSATVTVPAVPPGPRLGDLMRPATASPLPADAVQFTHGTTAPGWTSTVRTRWDDRTAFTHAGAPQPFLTMTSAVTGQDLADPTRGGEYDGTNASVKNIDVAFTITARRFAIAYRATRTHDAMVWLDDRPISARPIVAQSANDTTYTANWVVIELPARATTRVRFAGPLNFVGVDVPAAEAAVIKAAPPRLTVGVLSDSYFDVCAQSVCMSRAAVPTLGTQTGWRVWNLAEVGTGYLSASNGPTYGSFKPGPFGGSRRLAAVERAPLDLLLVNGSINDASTPSYSAETHRAAVDKLLDDLARLRPDLPVVLIGIEPLGRFQTGIWDERSRSMNATLASMVGRHANVIAFIDPLTDRWLTGTGSISEPKGDGNQDEYIGTDGVHPSIAGVSYYVGRVVAGLKDVRLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDI0</accession>
    <name>A0A0Q8VDI0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5 7">50S ribosomal protein L3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplC</name>
        <name evidence="8" type="ORF">ASE19_06585</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 7">One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 7">Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L19.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uL3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894497.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55094">
        <property type="protein sequence ID" value="KRC55094"/>
        <property type="gene ID" value="ASE19_06585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1270636at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01325_B">
        <property type="entry name" value="Ribosomal_L3_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000597">
        <property type="entry name" value="Ribosomal_L3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019927">
        <property type="entry name" value="Ribosomal_L3_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019926">
        <property type="entry name" value="Ribosomal_L3_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11229">
        <property type="entry name" value="PTHR11229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00297">
        <property type="entry name" value="Ribosomal_L3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03625">
        <property type="entry name" value="L3_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00474">
        <property type="entry name" value="RIBOSOMAL_L3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00019301"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC55094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="216" mass="22687" checksum="55CEFA42A2848A09" modified="2016-01-20" version="1">MTIERNVKGLLGTKLGMTQLWDENNRIVPVTVVAASTNVVTQVRQPEPDGYNAIQIGYGEIEGRKVTKPQAGHFAKAGTTPRRHVVEIRTADASEYTVGQELAVDTFEAGQAIDVTGTSKGKGFAGVMKRHGFAGVSASHGAHRNHRKPGSIGACATPGRVFKGLRMAGRMGSDTVTTQNVTVHAVDVEKGLVLIKGAVPGPKGGLVVLRTAAKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDN2</accession>
    <name>A0A0Q8VDN2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Proline dehydrogenase</fullName>
            <ecNumber evidence="3">1.5.5.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_10290</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a quinone + L-proline = (S)-1-pyrroline-5-carboxylate + a quinol + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23784"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17388"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="1.5.5.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="7">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid degradation; L-proline degradation into L-glutamate; L-glutamate from L-proline: step 1/2.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.5.5.2" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894730.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52797">
        <property type="protein sequence ID" value="KRC52797"/>
        <property type="gene ID" value="ASE19_10290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1746057at2"/>
    <dbReference type="UniPathway" id="UPA00261">
        <property type="reaction ID" value="UER00373"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004657">
        <property type="term" value="F:proline dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010133">
        <property type="term" value="P:proline catabolic process to glutamate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029041">
        <property type="entry name" value="FAD-linked_oxidoreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008219">
        <property type="entry name" value="PRODH_bac_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002872">
        <property type="entry name" value="Proline_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015659">
        <property type="entry name" value="Proline_oxidase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13914">
        <property type="entry name" value="PTHR13914"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01619">
        <property type="entry name" value="Pro_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000196">
        <property type="entry name" value="Pro_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51730">
        <property type="entry name" value="SSF51730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0274">FAD</keyword>
    <keyword evidence="7" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pro_dh" evidence="8">
        <location>
            <begin position="44"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="227"/>
            <end position="228"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="289"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="290"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000978"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000196-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000196-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC52797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="309" mass="33303" checksum="8C8685773A0FFA8D" modified="2016-01-20" version="1">MGPGRGAFHALSRGSMRLVVSALPFPPALVRGYVAGVTVRDAIAAVEHLAAERIDATVEHLAPEPADEAQAIAAAQAYRVLLDRIADAGLGPRAEVSVKLGTIGLRLPDGEKIALENARKICRAAVSAGTTVTLDMEEHASVDATLAVLAALRLDFPETGVALQARLRRTESDCRRLAHEGSRVRLCKGSYDASGDVAFTDPGDIDRAFVRCLKILFGGDGHPMVATHDPRLIEITSALASRYGRAPGTYEFQLQYGVRAAEGRRLAASGERVRVAVPYGEHWYDYLVRRVAERPRDLSLFLTSLVSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDX9</accession>
    <name>A0A0Q8VDX9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Sulfate adenylyltransferase</fullName>
            <ecNumber evidence="1">2.7.7.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_07165</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.4" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895291.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53859">
        <property type="protein sequence ID" value="KRC53859"/>
        <property type="gene ID" value="ASE19_07165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="244339at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004781">
        <property type="term" value="F:sulfate adenylyltransferase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006790">
        <property type="term" value="P:sulfur compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04166">
        <property type="entry name" value="CysN_ATPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03695">
        <property type="entry name" value="CysN_NodQ_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd04095">
        <property type="entry name" value="CysN_NoDQ_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041757">
        <property type="entry name" value="CysN_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044138">
        <property type="entry name" value="CysN_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044139">
        <property type="entry name" value="CysN_NoDQ_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011779">
        <property type="entry name" value="SO4_adenylTrfase_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="SSF50465"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02034">
        <property type="entry name" value="CysN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Tr-type G" evidence="7">
        <location>
            <begin position="1"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="414" mass="45837" checksum="CD2D00CE1CA4DC00" modified="2016-01-20" version="1">MDLLRFATAGSVDDGKSTLIGRLLLDSKSIFEDQLEAVEATSEAKGYDYTDLALLTDGLRSEREQGITIDVAYRYFATPNRKFIIADTPGHVQYTRNMVTGASTADLGLVLVDARQGLTEQSRRHAVILSLLRVPHLVLAVNKMDLVGYDQAIYEKIYAEFTQFATKLNVPDLEVIPISALNGDNVVTRSENMPWYSGPTLMHHLEHVHVASDRDLIDARFPVQYVIRPKSDEFHDYRGYAGQVAGGVLKPGDEVVVLPSGMTSRIAKIDLFDQEITEAFPPMSVTVHLEDDVDVSRGDMIARVKNAPTPSQDIDAMVCWMTNAPLQPRQKLAIKHTTRTGRALVKDIQYRLDVNTLHRDQETKELGVNEIGRVTLRTTVPLLADPYSKNRTTGSFILIDEATGVTVGAGMING</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF52</accession>
    <name>A0A0Q8VF52_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12215</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895064.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53137">
        <property type="protein sequence ID" value="KRC53137"/>
        <property type="gene ID" value="ASE19_12215"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="110"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="150"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="182" mass="19619" checksum="B1ABFA4498AE39C7" modified="2016-01-20" version="1">MSDEIYVPIVKIYTAARQGIPDQAEELALIGGRLQSIVTTLDVQTAKAGDPPALRDALTIAGNIHDGIRRGVTTLNHAAFALEATGDDYVQSDTQARDEFNQWHGALKGIEPTRTTVPGDVGSPESPGAVLIDPTGHSYPHVIYSSDYDPEAPSEDKSDRDETADEDKSDLGLPYDPTAQYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFN9</accession>
    <name>A0A0Q8VFN9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10320</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894735.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52802">
        <property type="protein sequence ID" value="KRC52802"/>
        <property type="gene ID" value="ASE19_10320"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1643154at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="253" mass="28551" checksum="1BDDF80EE6CF3821" modified="2016-01-20" version="1">MPEVSLDFPRAWVEFVNPADETEVLRCDLTWLTSSYTCIFGSGCAGIYADSPDVGCCTLGAHFADKEDERRVESFVLQLTPEHWQHHPGRPVKRRDWVEKDEDGERKTRMHEVGGQRSCVFANRADFAAGAGCALHGLALEQGRNPLETKPDVCWQLPIRRTFREVERMDGTSYTEVTITEYDRRGWGPGGHDLDWYCSGNTDAHVGVEPVYVTNEAELVALMGREGYDELVRRCEAHLRSRSALALHPADPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG48</accession>
    <name>A0A0Q8VG48_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894895.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52962">
        <property type="protein sequence ID" value="KRC52962"/>
        <property type="gene ID" value="ASE19_11200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2186348at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360009" evidence="1">
        <location>
            <begin position="29"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="229" mass="23369" checksum="12EB8449AC52BA1A" modified="2016-01-20" version="1">MRSKIATFLTVIGAVTVLVLAANTAAIAATGKGFLLGKANSADRLTSIARTTNGPVLSVKTRTSTAAPFAVNGKGRVTNLNADKVDGKDASVLGTRAWVWAYAGSSTASSGHTYTLPNLPAGTYLFNYEVWLGPGSYNGAGDLDCYLNRGSLYGAEAGAPGSGTFGTGVTGSATMTLPAAANVNLICRVSSGTSTWSFSQNQPLRITAVPVTALTLKGMPSAKTVARVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG94</accession>
    <name>A0A0Q8VG94_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Thioredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_14475</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the thioredoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896967.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53536">
        <property type="protein sequence ID" value="KRC53536"/>
        <property type="gene ID" value="ASE19_14475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1630944at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005746">
        <property type="entry name" value="Thioredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000077">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01068">
        <property type="entry name" value="thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2 4" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="5">
        <location>
            <begin position="2"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="4">
        <location>
            <begin position="30"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR000077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000077-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="119" mass="12594" checksum="E0948DDFC6EAB48F" modified="2016-01-20" version="1">MSTIDLTAGNFEQTVLDNEIVFVDFWASWCGPCRNFAPIYEAAAASHGDLVFGSVNTEEEQQLAGAARVTSIPTLMAFKKGQLVFSQAGALPAPALEQVIAAVRGFDVDTARAGEAGEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH24</accession>
    <name>A0A0Q8VH24_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidoglycan glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_02395</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892714.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56696">
        <property type="protein sequence ID" value="KRC56696"/>
        <property type="gene ID" value="ASE19_02395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="213680at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005311">
        <property type="entry name" value="PBP_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036138">
        <property type="entry name" value="PBP_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03717">
        <property type="entry name" value="PBP_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56519">
        <property type="entry name" value="SSF56519"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PBP_dimer" evidence="3">
        <location>
            <begin position="45"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="2">
        <location>
            <begin position="249"/>
            <end position="557"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="580" mass="62201" checksum="009450B3270812C1" modified="2016-01-20" version="1">MHVGFLLIAIVLSVFAGRLLQLQAIDPGSYAQMAADEGTQRVVLPATRGEILDRNGEPLAETVDGRMIVADPQVTRPVAARLATVLARRLGVDYFQTLERLRIENSRFQYVARQVPAAKAEKVVADVKEMFKDEDGRPFAGLMTERDPLRVYPNDEVAANLLGFLGTPKDDGSAQALAGLEDSFNKYLSGTDGEARYEMGAGNQIPLGDNTVTPAVDGKDLRLTLDRDLQDYVQRVLQQTVVGAGGESGIAMVMDSRTGNFLALADYPTYDASDPYRYDDKLYKSSALSDVYEPGSVEKVLTVSSLVDAGLAFRTQKFRVPGKLFRQDRPIGDYWEHGTLRLTLAGIIAKSSNVGTVLAADQFGRGQLRRYLTAFGLGQRTDIGLNGESKGILPQGAAWTSQVDDRIAFGQSLSVNAVQMITAVNTIANGGVRVSPSLVMGRARTDGGQEVGTDAVTSRRVISAHAAHETMLMMERVLDPEEGVAPRAAVPGYRVAGKTGTAQRVGENGGYDGSTTVSFAGFAPADNPRFTIYVVVHSPRAGSGGGSVAGPAFSKLMSFTLRRYGVPPTGGKANQTPVEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH78</accession>
    <name>A0A0Q8VH78_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Amine oxidase</fullName>
            <ecNumber evidence="3">1.4.3.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_13145</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>L-topaquinone</name>
            <dbReference type="ChEBI" id="CHEBI:79027"/>
        </cofactor>
        <cofactor evidence="3">
            <name>Cu cation</name>
            <dbReference type="ChEBI" id="CHEBI:23378"/>
        </cofactor>
        <text evidence="3">Contains 1 topaquinone per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>L-topaquinone</name>
            <dbReference type="ChEBI" id="CHEBI:79027"/>
        </cofactor>
        <text evidence="2">Contains 1 topaquinone per subunit.</text>
    </comment>
    <comment type="PTM">
        <text evidence="2 3">Topaquinone (TPQ) is generated by copper-dependent autoxidation of a specific tyrosyl residue.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the copper/topaquinone oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.3.-" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895760.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53298">
        <property type="protein sequence ID" value="KRC53298"/>
        <property type="gene ID" value="ASE19_13145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="363966at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008131">
        <property type="term" value="F:primary amine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009308">
        <property type="term" value="P:amine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032109">
        <property type="entry name" value="Big_3_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000269">
        <property type="entry name" value="Cu_amine_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015798">
        <property type="entry name" value="Cu_amine_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036460">
        <property type="entry name" value="Cu_amine_oxidase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10638">
        <property type="entry name" value="PTHR10638"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16640">
        <property type="entry name" value="Big_3_5"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01179">
        <property type="entry name" value="Cu_amine_oxid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49998">
        <property type="entry name" value="SSF49998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0186">Copper</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="1 3" id="KW-0801">TPQ</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360067" description="Amine oxidase" evidence="4">
        <location>
            <begin position="42"/>
            <end position="662"/>
        </location>
    </feature>
    <feature type="domain" description="Cu_amine_oxid" evidence="5">
        <location>
            <begin position="70"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="6">
        <location>
            <begin position="480"/>
            <end position="567"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="6">
        <location>
            <begin position="580"/>
            <end position="661"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="123"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate; via topaquinone" evidence="1">
        <location>
            <position position="217"/>
        </location>
    </feature>
    <feature type="modified residue" description="2',4',5'-topaquinone" evidence="2">
        <location>
            <position position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR600269-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR600269-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF16640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="662" mass="69774" checksum="48007C03BDE9F419" modified="2016-01-20" version="1">MDISVRHPRTGRARRALTALATLASGAATLVAVTTAAPAGAVPVAQEPVATPAACSQQGSIVRTLENGTSWSMCWNIDSKKGLVIEALSVKAPGDTGYRRVLDSLSLAQLNVPYDSGQHQWNDITSYGFGNQYLQKLDESECPDGELIDVEQVWLQRSGTTNKYVERTIPAICVQEVATGLSYRSHEQDWGSIDDKLLFTDQGSELVVSTVSKVDWYEYQSQYRMTDNGTITARLGATGDISPEDFADPAYGWPVGAGSTDHATSHHHNAFWRVDFGIDGASSQKVRMIDSEVTGAGTRGPVLTSTITPVDTARTLEMRKRRIYNVYAPSSLNDDQHPRGYEIEFEENDPYEGNAETTPEVTFTQYNACQEFATQNQNPSCALQGVLDYAASGANLTNPVAWVNVGFHHLVRDEDQSPMPVHWQGFELVARDFWAQNPLTPSARDCVNGNPGGQVDSTTACGHATATGLALSATGQKVGTTAPATATVTVTQASAEGKVPEGTVSLVDGADLVASGPVDAEGKAALTLPATLAAGAHSLVAVFAPADGTSWMTSSSEPVPFTVTPAAPVASRTTVKLSRTTVTTAQRASARVTVTSTPTATGKVTVYAGGKAVGTGTLVKGTVSVTLAKLPAGTYRVVAKYAGSAAVKASSSAAVTLKVVRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHK4</accession>
    <name>A0A0Q8VHK4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phosphate transport regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_07500</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PhoU family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0111 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53917">
        <property type="protein sequence ID" value="KRC53917"/>
        <property type="gene ID" value="ASE19_07500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1837604at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038078">
        <property type="entry name" value="PhoU-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018445">
        <property type="entry name" value="Put_Phosphate_transp_reg"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01865">
        <property type="entry name" value="PhoU_div"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="217" mass="24066" checksum="3D46786E34C78229" modified="2016-01-20" version="1">MIAFVSASTGVHVGLRLRPVDTSFYDLFTKSAQHLVGGAELLAEMLSDNSDKASVAERMRAAEHAADETTHEIVKKVNSTFVTPFDREDIYALGSGLDDVMDMMDEAVDLILLYEVQTLPAELSEQVEVLQRCAELTAAAMPRLQSMQSLDDYWIEINRLENAGDRNHRRILASLFSGEYKTIEVLKLKDIVESLEGAIDAFEKVANTVEQIAVKEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHM3</accession>
    <name>A0A0Q8VHM3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Adenosine deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_09795</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894648.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52711">
        <property type="protein sequence ID" value="KRC52711"/>
        <property type="gene ID" value="ASE19_09795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="554648at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019239">
        <property type="term" value="F:deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009168">
        <property type="term" value="P:purine ribonucleoside monophosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006650">
        <property type="entry name" value="A/AMP_deam_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001365">
        <property type="entry name" value="A_deaminase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006330">
        <property type="entry name" value="Ado/ade_deaminase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43114">
        <property type="entry name" value="PTHR43114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00962">
        <property type="entry name" value="A_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01430">
        <property type="entry name" value="aden_deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00485">
        <property type="entry name" value="A_DEAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="A_deaminase" evidence="3">
        <location>
            <begin position="8"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="339" mass="36570" checksum="ECAA0417FC7EA167" modified="2016-01-20" version="1">MRDLHALPKAHLHLHFTGSMRHATLLELAERDGIHLPDALVAEWPPQLTAADEKGWFRFQRLYDVARSVLRTEDDVRRLVREAAEDDVADGGRWLEIQVDPSGYGGRFGGITAFTDLVLDAVRDASARTGLGMAVVIAANRTRHPLDARTLARLAAQYVDRGVVGFGLSNDERRGRTQEFAGAFAIAERAGLLLVPHGGELRGPEHIRTCLDSLHAGRLGHGVRAAEDADLLKRIVDTGVALEVCPVSNVALGVYSDLTSVPLPTLLDAGATIALGADDPLLFGSRLAGQYATMRAAHDLSDEQLAELARMSLRASRAPGELRDRALADVDAWLAAPDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHQ6</accession>
    <name>A0A0Q8VHQ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892985.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56968">
        <property type="protein sequence ID" value="KRC56968"/>
        <property type="gene ID" value="ASE19_03975"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="106"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="156"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="184"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="230" mass="22572" checksum="E6569A6820150466" modified="2016-01-20" version="1">MKKRSRNPVTPAVAELLAAAAPTPGADVPGEAEALAAFRVAQAQAQAAPVPRAGRITAARAAIVTALTTKLVAGAVAAGAVAVVAGAGVLAVSTGVVPGLPDHGTGSDHSTVSPGTDDTTDNDATDDTTGTTDGSTSVPGQGTPQGSRPTGVPSGRPSDLPTPPHPTGKPSGVPSPAQPSRKPSDLPTGPTTPTLPTQATQPTQRPTPTTGRPAELPATQPTSRIQRSGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHQ7</accession>
    <name>A0A0Q8VHQ7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 10">Histidinol dehydrogenase</fullName>
            <shortName evidence="10">HDH</shortName>
            <ecNumber evidence="5 10">1.1.1.23</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">hisD</name>
        <name evidence="17" type="ORF">ASE19_02270</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <reference evidence="17 18" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 10">Catalyzes the sequential NAD-dependent oxidations of L-histidinol to L-histidinaldehyde and then to L-histidine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>H2O + L-histidinol + 2 NAD(+) = 3 H(+) + L-histidine + 2 NADH</text>
            <dbReference type="Rhea" id="RHEA:20641"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57595"/>
            <dbReference type="ChEBI" id="CHEBI:57699"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10 15">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="10 15">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 9/9.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 10 11 16">Belongs to the histidinol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.23" evidence="5 10"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893057.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57022">
        <property type="protein sequence ID" value="KRC57022"/>
        <property type="gene ID" value="ASE19_02270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="935289at2"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00014"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004399">
        <property type="term" value="F:histidinol dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06572">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01024">
        <property type="entry name" value="HisD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001692">
        <property type="entry name" value="Histidinol_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022695">
        <property type="entry name" value="Histidinol_DH_monofunct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012131">
        <property type="entry name" value="Hstdl_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21256">
        <property type="entry name" value="PTHR21256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00815">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000099">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00083">
        <property type="entry name" value="HOLDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00069">
        <property type="entry name" value="hisD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00611">
        <property type="entry name" value="HISOL_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="7 10 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 13" id="KW-0520">NAD</keyword>
    <keyword evidence="9 10 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10 15" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Proton acceptor" evidence="10 12">
        <location>
            <position position="339"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10 12">
        <location>
            <position position="340"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10 13">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 13">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 13">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 14">
        <location>
            <position position="248"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 14 15">
        <location>
            <position position="270"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10 14 15">
        <location>
            <position position="273"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10 14">
        <location>
            <position position="340"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 14 15">
        <location>
            <position position="373"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10 14">
        <location>
            <position position="427"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 14 15">
        <location>
            <position position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004940"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00016531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRNR" id="PIRNR000099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU004175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KRC57022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="442" mass="46100" checksum="20A8264E95C9E512" modified="2016-01-20" version="1">MIRRIDLRTMPTAGDTSVDYRAAVPRADFDIEAAVPAVHAICEEVRTRGLDAIVEFGEKFDGVRVDDIRVAPEAMQAALADLDPGIRAGLEESIRRLRATCANELEQDAVTDLGPGARVTHRKVPVGRVGLYVPGGLAPLVSSVLMNVVPAQTAGVESIALASPPQKEFGGSVHPTILAACALLGVEEVYAVGGAQAIAMFAYGLNDTDPSRRVARVDLVTGPGNIWVVTAKRILKGQIGIDSEAGPTEIAILADDTGDAAFVAADLISQAEHDPLAASVLVTTSERLAGEVEVELDKQVAATKHTERITTSLGGQQSGIVLVRDLEQGLDVVNAYAAEHLEIHTEDAAAWAARVRNAGAIFVGPHAPVSLGDYCAGSNHVLPTAGCACHSSGLSVRAFTKSVHVIDYSEAALAEVAGHVVTLAEAEDLPGHGAAVTVRVSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHZ1</accession>
    <name>A0A0Q8VHZ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two-component system response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_14310</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896997.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53506">
        <property type="protein sequence ID" value="KRC53506"/>
        <property type="gene ID" value="ASE19_14310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="817710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="3"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="126"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="126"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="24761" checksum="91362BF0FD912B95" modified="2016-01-20" version="1">MTRIMVVDDEPQIVRALSINLRARGYEVTTAGDGTEALAVAELAPPDVVVLDLGLPDLDGVDVITRLRAQSAVPILVLSGRSDSADKVDALDAGADDYVTKPFGMEELLARLRVMLRRNAPADADLPVVSFGGVVVDLAATRVTVSGEEVRLTPTEWHLLEVFLRNPGRLISQRQLLSEVWGPGYENAHGNLRLYMAQLRRKLEPEPSRPVHFRNEPGMGYRFEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI65</accession>
    <name>A0A0Q8VI65_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_03085</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the autoinducer-2 exporter (AI-2E) (TC 2.A.86) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57044">
        <property type="protein sequence ID" value="KRC57044"/>
        <property type="gene ID" value="ASE19_03085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002549">
        <property type="entry name" value="AI-2E-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21716">
        <property type="entry name" value="PTHR21716"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01594">
        <property type="entry name" value="AI-2E_transport"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="27"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="83"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="215"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="246"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="270"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="317"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC57044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="362" mass="38283" checksum="92D31136B8A3BECE" modified="2016-01-20" version="1">MDPAAAAAPAESPYGEMGQPFDRRSPFYYGFVGALGALSAFWLFKAVAGIGSVLLLVVVSFFLAAGLNPSVEFLERRGLRRSFAVTLVIVLALGTVALFLVAIVPVITDQVQAITKSAPGWLDELQKNKRIQDLNDEYDIIDKLKAKITDESFVSALFGGALGFGLKLVSALFNLFVIVVLTLYFLASLKTTTGAIYNLAPASRRDRVARLGDKVIANIGGYVSGAFLVAMAAGISSLVFLSFTPIGKYAVALAFVVAVLDVIPMIGATLGAVIVCAIAFATDVKTGVICVIFYVVYQQVENYLIYPRVMSKSVDLPGAVIVIAALVGTALLGVVGALLAIPAAAAVLLVIREVVVKRQDTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIB9</accession>
    <name>A0A0Q8VIB9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02025</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57014">
        <property type="protein sequence ID" value="KRC57014"/>
        <property type="gene ID" value="ASE19_02025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="187" mass="20503" checksum="A6A21D7EFE5D2C93" modified="2016-01-20" version="1">MTTRVATREDAVALTELWSDAVRRADRSEQAADLELVIKTAAASPEQRVVVVEYDGNLAGAVYLRITTLSPLNLEPCVQSIHPRVFDHYRRHGVGHTLMEAATAFAEENGILHVVTAVPHSSRDANRFMARLGLAPVVMYRIAPTTLLRSRISPQRSAVGADSGRTKVLAARRSLRRARAERLAAAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIJ1</accession>
    <name>A0A0Q8VIJ1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">NlpC/P60 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_08820</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C40 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895577.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54145">
        <property type="protein sequence ID" value="KRC54145"/>
        <property type="gene ID" value="ASE19_08820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="682655at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000064">
        <property type="entry name" value="NLP_P60_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00877">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51935">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360075" description="NlpC/P60 domain-containing protein" evidence="2">
        <location>
            <begin position="33"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="domain" description="NlpC/P60" evidence="3">
        <location>
            <begin position="69"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="183" mass="19958" checksum="4AF88564F97B07CE" modified="2016-01-20" version="1">MSTTFSRAAARLLVVPVATSAFLASPAPVSHAETRTVAVSSPGLAADATTQARLDTRRDLRAARIAHRKRFGNRVVAKARSRAGSPYVYGATGPHAFDCSGLTQWVFRKLGKHLPRTSGAQAGAVRRVRHPRRGDLVFFTSGGHVYHVGIYAGHHMLWHASRPGHPVAKERIWTSSVFYGRVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ73</accession>
    <name>A0A0Q8VJ73_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Succinyl-CoA--3-ketoacid-CoA transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23755</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893984.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57350">
        <property type="protein sequence ID" value="KRC57350"/>
        <property type="gene ID" value="ASE19_23755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1660857at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008410">
        <property type="term" value="F:CoA-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012792">
        <property type="entry name" value="3-oxoacid_CoA-transf_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004165">
        <property type="entry name" value="CoA_trans_fam_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13707">
        <property type="entry name" value="PTHR13707"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01144">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00882">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02429">
        <property type="entry name" value="pcaI_scoA_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="254" mass="27227" checksum="9872647EF523019E" modified="2016-01-20" version="1">MDKVISSAAEAVADIPDGATLTVGGFGLCGIPSVLIAALLDAGTTDLEVVSNNAGVDGWGLGRLLAARRLRRVVASYVGENKEFARQYLSGELEVELTPQGTLAERMRAGGSGIAGFYTRTGVGTQVADGGLPWRYDDAGNVIKTSPQKPVMRFETRAGEQEFVLEEAIVSDFGLVRAWKGDRHGNLVFNQSARNFNPLAAMAGQVTIAEVEELVEPGELDPDQVHLPGVYVHRVVPLTPEQAADKRIEKRTVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJQ8</accession>
    <name>A0A0Q8VJQ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13445</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895813.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53351">
        <property type="protein sequence ID" value="KRC53351"/>
        <property type="gene ID" value="ASE19_13445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1827824at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="39"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="69"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="4">
        <location>
            <begin position="157"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="123"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="379" mass="39511" checksum="B0F77B9E065E851D" modified="2016-01-20" version="1">MSGDQLQVVLIAAGWTSLVGLGGFAVARVTARRSLRLGLVLVALVAVGVVVAGVVGTADAMFISPHDRGVVLLVCLVAGLVAVALASVVGEAVVRRARDLQDAARRFGETGEYAASAAGPAELQGLSAELERTSARLREARLRERRLEESRRELVAWVSHDLRSPLAGLRAMAEALEDGMAEDPARYHRQMRSEVDRIVRMVDDLFELSRIQAGLLPVVPARVDLGDIVSEAIAGTTPVARAAGVRIDGRVAPGTTITADAAGMSRVVANLLVNAVRHTPADGVVTVSGRVTDDAVELSVRDACGGIPAADLPRLFDVAWRGTTARTPEVDARHGAGAGLGLAIVKGIVEAHHGAVRVANEAPGCCFSVQLPLGVFGQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK37</accession>
    <name>A0A0Q8VK37_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GGDEF domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14165</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897024.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53479">
        <property type="protein sequence ID" value="KRC53479"/>
        <property type="gene ID" value="ASE19_14165"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF" evidence="1">
        <location>
            <begin position="35"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="171" mass="18323" checksum="BA595D33570EBA58" modified="2016-01-20" version="1">MTTTALYDAETGLPGRGLLTDRLLMALRGAERTGHEVGLVLLELTSIEHEDAATGTPDVLSEVLQEVAERLSACIRGVDSVGRLGPTTFALVLQGEVGEEGIRTLARRVLFELSPPILTGLRQHFVTARLGGTFAVPGLDDPRSMLRRAGVALDQARQPDAELFVLHDTGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VME0</accession>
    <name>A0A0Q8VME0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Phosphoribosyl-AMP cyclohydrolase</fullName>
            <shortName evidence="7">PRA-CH</shortName>
            <ecNumber evidence="7">3.5.4.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">hisI</name>
        <name evidence="9" type="ORF">ASE19_02190</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>1-(5-phospho-beta-D-ribosyl)-5'-AMP + H2O = 1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:20049"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58435"/>
            <dbReference type="ChEBI" id="CHEBI:59457"/>
            <dbReference type="EC" id="3.5.4.19"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="7">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 3/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the PRA-CH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.19" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892677.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56659">
        <property type="protein sequence ID" value="KRC56659"/>
        <property type="gene ID" value="ASE19_02190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1842189at2"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00008"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004635">
        <property type="term" value="F:phosphoribosyl-AMP cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.810">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01021">
        <property type="entry name" value="HisI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026660">
        <property type="entry name" value="PRA-CH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002496">
        <property type="entry name" value="PRib_AMP_CycHydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038019">
        <property type="entry name" value="PRib_AMP_CycHydrolase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01502">
        <property type="entry name" value="PRA-CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141734">
        <property type="entry name" value="SSF141734"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="5 7 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PRA-CH" evidence="8">
        <location>
            <begin position="34"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="113" mass="12551" checksum="69CC8DCFF15C1FB2" modified="2016-01-20" version="1">MTSLDPAIAERLKRTTDGLLPAIVQQHDTGEVLMLAWMDDEALHRTLTTGRATYWSRSRQEYWVKGETSGNPQHVHEVRIDCDGDTLLVKVDQVGVACHTGTRTCFDDGLLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN70</accession>
    <name>A0A0Q8VN70_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Mammalian cell entry protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23070</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892544.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58942">
        <property type="protein sequence ID" value="KRC58942"/>
        <property type="gene ID" value="ASE19_23070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="47"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="2">
        <location>
            <begin position="128"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="445" mass="47083" checksum="AA2217DB4332D8FC" modified="2016-01-20" version="1">MTRSIRSWRSALAGLLGLAVLTGCSSFDGAYDLPLPGHEVDADDAFEITVYFKDVLNVVPRSPVMVDDVTVGEVSEVERSGWNAKVKLLIRKDVELPDNAIADIRQVSLLGEKYVALEAPKEEAPTGRLAEGDTIDLAKTGRNPEVEEVLGALSFLLSGGGVAQLGTITREANQVMSGREDRLRNLLSSLDSVVGTVDQQKVQIINALESLNNLTSTLNSEKQTISDALDATGPAIEVLSAQHDELIDMLGALDRLGKVGTRVINASKEDVLAILEDLSPILRRLRQADEQLAPGLNLLVSFPFPQSANDIVQGDYADTIARVDIDLTNLFHTLGLPAIQLPDLGQVLDQVGRCLKSGSLTSTACARVLSDLDLLKQMKADCKKVALKGSPVCKLLNSLPNLDLSQLLNGGLLGPNGLLSGLTGGLAPSGSTGGGTTKQLLGATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNE2</accession>
    <name>A0A0Q8VNE2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Allophanate hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_03060</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57043">
        <property type="protein sequence ID" value="KRC57043"/>
        <property type="gene ID" value="ASE19_03060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003778">
        <property type="entry name" value="CT_A_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02626">
        <property type="entry name" value="CT_A_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00797">
        <property type="entry name" value="AHS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="SSF50891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00724">
        <property type="entry name" value="urea_amlyse_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AHS2" evidence="4">
        <location>
            <begin position="22"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC57043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="280" mass="28598" checksum="8FE0BDB806A2E0A5" modified="2016-01-20" version="1">MVTAVDGGPCLVQDAGRPGYAAIGVGVSGAADRAAYALGNRLVGNAPGAAVVEVVLGGLEVEAGEHITVCVTGAPTPLEVDGRPEPPGAVLTLRPGQRLRLGTPASGLRSYLAVRGGLDVPGVLGSRSHDTLARLGPTALAPGARLPVGRDAATEVLVDAVPPASYDGRAVVRVVRGPRDGWVRDVDRLVGQVWRVGAASDRVGLRLDGDPLTATPHRGELPSEGALRGAVQVPPDGRPVVFGPDHPVTGGYPVVAVVVDADTDRLAQLRPGDELGFRWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNE7</accession>
    <name>A0A0Q8VNE7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SseB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23245</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892514.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58972">
        <property type="protein sequence ID" value="KRC58972"/>
        <property type="gene ID" value="ASE19_23245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1461900at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009839">
        <property type="entry name" value="SseB_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07179">
        <property type="entry name" value="SseB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SseB" evidence="2">
        <location>
            <begin position="27"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="176" mass="18280" checksum="AAB2CFB0839E3045" modified="2016-01-20" version="1">MTEPPEQRRLQGSEYVDDDGSADPALAAALIGYDDGTASYPEVLGVLAGARLLVPVVALLGEVEVGDDGLARDKSSDMAAVLLTGADGRLALLAFSAMSTLAGWDPQARPVPVRADLAAQTAVQEGADALVVDLAGPRRFVLSGDDLHRIAAGWRPVRVDDGDWAWLGSTDESAGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP39</accession>
    <name>A0A0Q8VP39_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23075</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58943">
        <property type="protein sequence ID" value="KRC58943"/>
        <property type="gene ID" value="ASE19_23075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="29"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="414" mass="44217" checksum="02887B8841A68372" modified="2016-01-20" version="1">MAFVVLSAVGITYITASYLGVVDRVTGRNITVTASLPGSGGLFEGSEVTYRGVKVGKVSSMEPTEEGVDLKLELEHGTELPLDAQVFVHNLSAVGEQYLDFQPKNADGPYAADGAHYQGNADSLPVDEGDLLVDLSRFVDSVDKESLQKVVKELGVMFGDTGRDLQRLLDGGSTFIAEASEHTDETIALLDNSLTVLRTQRGQKENIRSFAADLNTITTALRGQDKNLRTVLSQTPGAARAVDQLLKELEPTLPVLLGNLVTTNQILVSELDGIEQLLVTYPALISGGPSGSTADGWGHVNLQFDYSVPPCTQGYVKPEDWRSTQTLTDATAAEVSCTAGPPYNMRGSKYAPGNRRNHASPARVYSGVYDPVTGSVPGLEDNAGNPVRLKGQEDLSVLGGDAWKWLLIGPVASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPX4</accession>
    <name>A0A0Q8VPX4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_00190</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896842.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59498">
        <property type="protein sequence ID" value="KRC59498"/>
        <property type="gene ID" value="ASE19_00190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1022681at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005754">
        <property type="entry name" value="Sortase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023365">
        <property type="entry name" value="Sortase_dom-sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04203">
        <property type="entry name" value="Sortase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63817">
        <property type="entry name" value="SSF63817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="46"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="265"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="292"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="7"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="34737" checksum="4029F82F8465B389" modified="2016-01-20" version="1">MTAAPEAPQRKDRRRERTGPGAALRARMPKVERVANPAPTDWRLVVASYALSMLSVVLLALLLNLTVISQVQHFTSQNKLYDQLRLTIAEGSVPIGQRDVDGELVEAGTPIALLEIPRLELREVVVEGSSSRQTKLGIGHRFDTPYPGQAGASVLVGRASAYGGAFRWIDKLQPGDTIRVSTGQGTSEYSVIGARHGQQDLPALEPGKDGRLTMITSSGRPFQPSGVTMVDAELTTPVFPRPSIAIAEGYVKPDERVLSGDTSRVFSLSWLIQLLVAASVAAVWAAKRWNRLATWIVFVPVIAMLALACADRVTDLLPNTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPZ5</accession>
    <name>A0A0Q8VPZ5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">YCII domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00270</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the YciI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59512">
        <property type="protein sequence ID" value="KRC59512"/>
        <property type="gene ID" value="ASE19_00270"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005545">
        <property type="entry name" value="YCII"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03795">
        <property type="entry name" value="YCII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YCII" evidence="2">
        <location>
            <begin position="18"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="101" mass="11195" checksum="A3421B6C8266C49E" modified="2016-01-20" version="1">MTMPSWVYFIHPPRERFVETITEDEAAIMQTHAGYLDQLLQDGVLVLAGPTFGDVNTGISIFDADDEDAARAIMLADPAVQAGLMTPELRPMRVSFLRGRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ64</accession>
    <name>A0A0Q8VQ64_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7 8">Elongation factor Tu</fullName>
            <shortName evidence="7">EF-Tu</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tuf</name>
        <name evidence="10" type="ORF">ASE19_00690</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896758.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59582">
        <property type="protein sequence ID" value="KRC59582"/>
        <property type="gene ID" value="ASE19_00690"/>
    </dbReference>
    <dbReference type="OrthoDB" id="621774at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01884">
        <property type="entry name" value="EF_Tu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03697">
        <property type="entry name" value="EFTU_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00118_B">
        <property type="entry name" value="EF_Tu_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041709">
        <property type="entry name" value="EF-Tu_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033720">
        <property type="entry name" value="EFTU_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004541">
        <property type="entry name" value="Transl_elong_EFTu/EF1A_bac/org"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004160">
        <property type="entry name" value="Transl_elong_EFTu/EF1A_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03143">
        <property type="entry name" value="GTP_EFTU_D3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="SSF50465"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00485">
        <property type="entry name" value="EF-Tu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 7 10" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="5 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="9">
        <location>
            <begin position="10"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="19"/>
            <end position="26"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="83"/>
            <end position="87"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="138"/>
            <end position="141"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC59582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="397" mass="43794" checksum="3F85A67779DAD985" modified="2016-01-20" version="1">MAKAKFERTKPHVNIGTIGHIDHGKTTLTAAISKVLHDKYPDLNEASPFDQIDKAPEERQRGITISIAHIEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHVLLARQVGVPALVVALNKCDMVDDEELIELVEMEVRELLSEYEYPGDDIPVVRVAAFPALNGDAKWGESVAELMSAVDEYIPQPEREVDKPFLMPVEDVFTITGRGTVITGRIERGIVKVNEEVEIIGIRDTAIKSTVTGVEMFRKLLDEGQAGENVGLLLRGTKREDVERGMVVVKPGTTTPHTNFEASVYILSKEEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDNTDMSVELIQPIAMDEGLKFAIREGGRTVGAGRVTKITK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQG9</accession>
    <name>A0A0Q8VQG9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01210</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896667.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59674">
        <property type="protein sequence ID" value="KRC59674"/>
        <property type="gene ID" value="ASE19_01210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1439833at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="27"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="287" mass="31475" checksum="C0ED12B7BF294AB7" modified="2016-01-20" version="1">MADRITTLAHDGLTFDVTDEGPVDGEPVLLFHGFPERSSCWRLVRPILHDAGYRTIAMDQRGYSPGARPRRRRDYTMGALLGDALALVEAVAPGGRVHLVGHDWGAIPSWLLAIHHPDRVASLTAVSVPHPAAFLTAMVRSRQVLHSWYMLAFQLPFLPERVLRHGALAGRMVGSFGMTEEDAERFRTEIVEYGALPTALNWYRALPFGDPQLVRGKVAAPTTMVWSDGDAAVEGWGPENSDRWVEGPFRYVALEGVSHWIPTHAADALAEAVLEQLGAASTRALSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQP6</accession>
    <name>A0A0Q8VQP6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01775</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896567.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59772">
        <property type="protein sequence ID" value="KRC59772"/>
        <property type="gene ID" value="ASE19_01775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1641547at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="168"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="194"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="234" mass="25929" checksum="DC65A1B3F8AB4EA9" modified="2016-01-20" version="1">MEARVHRVLIWTGPLMVLIWFATFIFVMGFFPPSAPSASAEEVQQLYADDPTLIRVGLVIVMAASALLVPWAAAISGQLKRIEGARILAATQLVSCGLLSLEFITPIGVWMAAAFRYDERPPAVTEALHDVGWILFVTVIWSLWMQMWCIVAAIFIDRRPEPVLPRWLGYLTAWAALLITPAGLVLFFKDGPFAWNGIVGIYIPLAAFAIWMACISYEVHRALTVQIDEGTEPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRL8</accession>
    <name>A0A0Q8VRL8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PPM-type phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57056">
        <property type="protein sequence ID" value="KRC57056"/>
        <property type="gene ID" value="ASE19_03620"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006470">
        <property type="term" value="P:protein dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00143">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015655">
        <property type="entry name" value="PP2C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13832">
        <property type="entry name" value="PTHR13832"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="252" mass="26022" checksum="FCA2A3B1C9440487" modified="2016-01-20" version="1">MVHAAATHPGRVRTVNEDSLLVAPPVFVVADGMGGYERGDAASRLVVEAFAPLAGLGVVQPADIDAAVRSAQQQVAALVGADGSAPGSTLVAAAHVIEDGRGYWLVANIGDSRAYLLANGVLEQISRDHSVVQELIDAGELTRDEALGHPERHVVTRAIGAHTLSEPDFALVPAEVGSRLLLCSDGLPTEISDTAILHILAEDGPAERTVNTLVDAAVAAGGHDNVTVVVVDVAGTADERVEHTRPNAGERS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTC5</accession>
    <name>A0A0Q8VTC5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phospholipase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23000</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58995">
        <property type="protein sequence ID" value="KRC58995"/>
        <property type="gene ID" value="ASE19_23000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1881748at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001736">
        <property type="entry name" value="PLipase_D/transphosphatidylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00155">
        <property type="entry name" value="PLDc"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50035">
        <property type="entry name" value="PLD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PLD phosphodiesterase" evidence="1">
        <location>
            <begin position="150"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="domain" description="PLD phosphodiesterase" evidence="1">
        <location>
            <begin position="322"/>
            <end position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="409" mass="47255" checksum="4EAE68811F08EDA9" modified="2016-01-20" version="1">MRTVLRRTLLTLVGVPFLVAIAMSLVDSYRRRGKRPKPFPTRDPRVVQVGDGEVTTYTYGRDLYDDMLAAIEGAERQILFETYIWKGDATGERFKRALIAAAERGVEVYCIYDAFANLVVSPAFQRFPSSVKVLRYPVYTAGWRFFDLRRYGRDHRKILVVDDHVGFVGGYNIGSAYETEWRDTHVRITGPAVWDLKRAFADFWNLNRRRRLRGSERPLLLETASTWEPRVRVQRNVPRLWMFPIRAMYIEAINRASRNVWLTQAYFLPDEDFIAAVKDAARRGVDVRLLLPLKSNHIVADWISRGYFSQLLDSGVRILRYRDAMVHAKTATVDGTWSTVGTANIDRLSLQGNFEINVEVIDESFAKELEAIFEVDQSHCLELTSGEWEARDMHRKFTELVLAPLRPLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTJ4</accession>
    <name>A0A0Q8VTJ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Flavodoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23505</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893934.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57728">
        <property type="protein sequence ID" value="KRC57728"/>
        <property type="gene ID" value="ASE19_23505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="796211at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="166" mass="17023" checksum="3A8A2FAD26F218AF" modified="2016-01-20" version="1">MPRLLVVHHSPSRSMQTLLEQVLAGAADEDVQEVAPVEVVVRPALEATADDVLAADGYVLGTTANFGYMSGALKHFFDSTFLAVGGALDPSGAPADGAGATGGRPYGLWLHGRYDLTGAQRSVQSIVGALGWRQGYDVVGVLGEVDDAAREAGYALGATIAALLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUH3</accession>
    <name>A0A0Q8VUH3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Bile acid 7-alpha dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00050</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896867.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59475">
        <property type="protein sequence ID" value="KRC59475"/>
        <property type="gene ID" value="ASE19_00050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1736098at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13577">
        <property type="entry name" value="SnoaL_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="5"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="155" mass="17790" checksum="D2570EBA015C3E2B" modified="2016-01-20" version="1">MTAHDDIAAITRLKYRYLRCLDTKQWDDFAECFAGDATADYNGLVFDDPVSLVAYMRRNMGEGVLTMHQAHHPEIDLDPEDPDRATATWYLHDKVVVDAHRFALEGGAIYGDTYVRTTEGWRILRTGYRRTFEMTWNLDEPGAVKVAGPEVRSRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXE3</accession>
    <name>A0A0Q8VXE3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22995</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58930">
        <property type="protein sequence ID" value="KRC58930"/>
        <property type="gene ID" value="ASE19_22995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1955315at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="17397" checksum="8EC05B3D45C7088C" modified="2016-01-20" version="1">MLSLGLTACGDNGSDEAGLRDQIRTLQAEKKANEDAVTAAKAFVAKVTTYSYKAGEHDFGWVEELQNEKVRSQFEERVDDLKKAIETSKTSAKGQVVEAMGRVVDETQVEVLAFVDQAITDPSGEVSVEESSITLTMKLDEDSGDWQVDTLTFLNQVDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VY63</accession>
    <name>A0A0Q8VY63_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00830</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896740.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59601">
        <property type="protein sequence ID" value="KRC59601"/>
        <property type="gene ID" value="ASE19_00830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2200344at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="106" mass="11358" checksum="5E0C57603303A877" modified="2016-01-20" version="1">MTDDTAITSWAGLAALDFAMGHLADDLRATTDHARQWVCQRDGFEPSPVCLLRPLAALMDVLADGFLALEERALADWASLRAGLGQFSDELQHLDDAVADAFGAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W1E3</accession>
    <name>A0A0Q8W1E3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00465</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896797.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59543">
        <property type="protein sequence ID" value="KRC59543"/>
        <property type="gene ID" value="ASE19_00465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="41"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="293"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="324" mass="33431" checksum="466383B9F21A8FC3" modified="2016-01-20" version="1">MSDLEQQLAGVLADVSEMAPAVSGLADGARRRHRVRRQRRLALGAGAIAVVVGAGAVLVGGLGGTDRANDPVDQQHLTPRPEGGWQDVVDSGLHFSVPADWTRRTCPDADAGASAIWAAPGGDPCADGMGALLGGPQHVDLSSTVGAVERIHDGDRTYHRGVVGVGQLYLGAADADRDVVRRILASAGVEGQPAVVADQWVSFERKGISYEIPTWWGVGESGDRSGYSVCLLPEDSPQLDGVVGDAAHYVLSDGSEPGAVIRVVAPTQAVAEMVMDTLVVRVGSAGSEDCGPEDFALGLLPGESTPGAGETGRVDRAPARPADR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM48</accession>
    <name>A0A0Q8UM48_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19650</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895870.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46094">
        <property type="protein sequence ID" value="KRC46094"/>
        <property type="gene ID" value="ASE19_19650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1294334at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="253" mass="26001" checksum="AF0B32085EE4AE94" modified="2016-01-20" version="1">MTVIDLFRLDGKVAVVTGASSGLGVDFAKALAEAGADVALGARRVERLADTAALVEAAGRRALSVQTDVADPASCQALVDAAMAEFGRVDILVNNAGVGTAVPATRETPEQFSQVIDINLNGSYWMAQACGRVMQPGSSIINISSVLGITTAGLPQAAYAASKAGVIGLTRDLAQQWTGRKGIRVNAIAPGFFASEMTETYPPGYLESQQARIPAGRKGDPRELAAALVFLASDAAGYVTGQTLAVDGGMTIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMD3</accession>
    <name>A0A0Q8UMD3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6 7">Elongation factor Ts</fullName>
            <shortName evidence="6">EF-Ts</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">tsf</name>
        <name evidence="10" type="ORF">ASE19_19975</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6 7">Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the EF-Ts family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895925.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46149">
        <property type="protein sequence ID" value="KRC46149"/>
        <property type="gene ID" value="ASE19_19975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1405357at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00050">
        <property type="entry name" value="EF_Ts"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036402">
        <property type="entry name" value="EF-Ts_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001816">
        <property type="entry name" value="Transl_elong_EFTs/EF1B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014039">
        <property type="entry name" value="Transl_elong_EFTs/EF1B_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018101">
        <property type="entry name" value="Transl_elong_Ts_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009060">
        <property type="entry name" value="UBA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11741">
        <property type="entry name" value="PTHR11741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00889">
        <property type="entry name" value="EF_TS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46934">
        <property type="entry name" value="SSF46934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54713">
        <property type="entry name" value="SSF54713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00116">
        <property type="entry name" value="tsf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01126">
        <property type="entry name" value="EF_TS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01127">
        <property type="entry name" value="EF_TS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6 7" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="4 6 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EF_TS" evidence="9">
        <location>
            <begin position="67"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="region of interest" description="Involved in Mg(2+) ion dislocation from EF-Tu" evidence="6">
        <location>
            <begin position="76"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00025453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="269" mass="28176" checksum="E699FFCF4AD842E1" modified="2016-01-20" version="1">MAFTAADVKKLRELTSAGMMDCKKALDETDGDFDKAVELLRVKGAAKAAARGAERETSAGLVANAGGALIELKSETDFVAKNEEFIKAAQQIAEAVDAGKATDTEAAKALPLGDSTVGAVVEHLAITIGEKIELGGVAYFDGPVAVYLHKRAADLPPAVGVLVEYDGNEAAARAAAMQVAALKAQYLTRDEVPADIVAAEKDVLTKKTIEEGKPEAAVAKIVEGRLGGFFKELVLLEQESVSESKKTVKAVLDEAGTTVKRFARFEVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UML7</accession>
    <name>A0A0Q8UML7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glycerol-3-phosphate dehydrogenase [NAD(P)+]</fullName>
            <ecNumber evidence="7">1.1.1.94</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">NAD(P)H-dependent glycerol-3-phosphate dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">gpsA</name>
        <name evidence="16" type="ORF">ASE19_20250</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <reference evidence="16 17" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>NAD(+) + sn-glycerol 3-phosphate = dihydroxyacetone phosphate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:11092"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.94"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 12">
            <text>NADP(+) + sn-glycerol 3-phosphate = dihydroxyacetone phosphate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:11096"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.94"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7 13">Membrane lipid metabolism; glycerophospholipid metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7 13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 11">Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.94" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895969.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46196">
        <property type="protein sequence ID" value="KRC46196"/>
        <property type="gene ID" value="ASE19_20250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1419877at2"/>
    <dbReference type="UniPathway" id="UPA00940"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009331">
        <property type="term" value="C:glycerol-3-phosphate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004367">
        <property type="term" value="F:glycerol-3-phosphate dehydrogenase [NAD+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046167">
        <property type="term" value="P:glycerol-3-phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046168">
        <property type="term" value="P:glycerol-3-phosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006650">
        <property type="term" value="P:glycerophospholipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00394">
        <property type="entry name" value="NAD_Glyc3P_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006168">
        <property type="entry name" value="G3P_DH_NAD-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006109">
        <property type="entry name" value="G3P_DH_NAD-dep_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011128">
        <property type="entry name" value="G3P_DH_NAD-dep_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07479">
        <property type="entry name" value="NAD_Gly3P_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01210">
        <property type="entry name" value="NAD_Gly3P_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000114">
        <property type="entry name" value="Glycerol-3-P_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00077">
        <property type="entry name" value="GPDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00957">
        <property type="entry name" value="NAD_G3PDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="4 7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7 10 11" id="KW-0520">NAD</keyword>
    <keyword evidence="3 7 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5 7 13" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_Gly3P_dh_N" evidence="14">
        <location>
            <begin position="4"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="NAD_Gly3P_dh_C" evidence="15">
        <location>
            <begin position="181"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7 9">
        <location>
            <begin position="256"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7 8">
        <location>
            <position position="192"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7 10">
        <location>
            <begin position="9"/>
            <end position="14"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7 10">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 10">
        <location>
            <position position="256"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="282"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000114-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000114-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000114-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU004280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF01210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF07479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KRC46196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="334" mass="34920" checksum="7B7494FA1BBE23F9" modified="2016-01-20" version="1">MGSKVAVLGAGSWGTAFSIVLADAGNDVSIWARREEVAASINERHENVDYLSGIELPRRITSTADAEQALAGADVVVLAVPSQSLRDNLPTFLPFLEPDAVLVSLMKGVELGTLKRMSEVVAEVGDIAPSRIAVVSGPNLAREIARREPAASVVACADEDVATQLQKRVHSPAFRPYTSVDVLGCEFGGAYKNVVALCVGMAVGLGFGDNTTASLITRGLAETARLAMNQGANPLTLMGLAGLGDLVATCSSPLSRNRTFGEKLGQGMTVDEIYASTRQVAEGAKSCSSLRALAAETGVEAPIVDAVDEVVQGRLTTSQLMEAFISRDTKAELS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMN6</accession>
    <name>A0A0Q8UMN6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Acyl_transf_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20710</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896038.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46267">
        <property type="protein sequence ID" value="KRC46267"/>
        <property type="gene ID" value="ASE19_20710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1221455at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002656">
        <property type="entry name" value="Acyl_transf_3_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01757">
        <property type="entry name" value="Acyl_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="181"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="227"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="254"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="291"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl_transf_3" evidence="2">
        <location>
            <begin position="7"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="356" mass="38826" checksum="5B8FCE0FE39CBC6B" modified="2016-01-20" version="1">MPATRDPWLDNAKIGLIVLVVLGHTWALLPDDVVAGHLYDFVYLWHMPAFVFLSGYLSRGFGYSPARLWNLVTGLLVPYVLFEGALAWFRLHVGGEQLGDLWLDPHFPMWYLLALVVWRLLTPLFRPVPGAFLVAVGLAVGSGYLTGEWTAWLDLPRILGFLPFFVLGLKTTPESLEWLRGRFPALLGVVAFAVLAVLAIDLDRWAGTAYLYQKPYELLGVPDTTAILTRLLVMGVGLVGTFAWLAVVPRRGGWFTRMGAATMTVYLFHGFAVKGLEYAGFPAWAAEHPVLALAAATGFGVAVALGLAAPPVQRTLRHVVDPFATAEQRVGAAVELAAVVREGEEAVEAEPVPAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMS1</accession>
    <name>A0A0Q8UMS1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20880</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896069.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46298">
        <property type="protein sequence ID" value="KRC46298"/>
        <property type="gene ID" value="ASE19_20880"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041347">
        <property type="entry name" value="MftR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17754">
        <property type="entry name" value="TetR_C_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="3"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="26"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="229" mass="24836" checksum="3940C1433C506DDA" modified="2016-01-20" version="1">MSTSARDRLVAAAFELFEGQGYDATTVDEIATLAGTGRSTFFRHFRGKEEVVLPDHEALLARLADRLTVASPGGSETALREATAMVLTQYLAEGETARARYRLASSVPAIRDREVASVQRYVRLFSQHVHGWLDQEPDGPLRAELVASSVVIAHNHVLRRWLRGETDDPHAELDGALTLALDLLRGPVAPEQPTIVITGGAEDVDEVVRRVREALGPGKNQGRSGLGPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMU9</accession>
    <name>A0A0Q8UMU9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carboxymuconolactone decarboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19655</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895871.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46095">
        <property type="protein sequence ID" value="KRC46095"/>
        <property type="gene ID" value="ASE19_19655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1893149at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051920">
        <property type="term" value="F:peroxiredoxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029032">
        <property type="entry name" value="AhpD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004675">
        <property type="entry name" value="AhpD_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003779">
        <property type="entry name" value="CMD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02627">
        <property type="entry name" value="CMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69118">
        <property type="entry name" value="SSF69118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00778">
        <property type="entry name" value="ahpD_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMD" evidence="1">
        <location>
            <begin position="17"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="154" mass="16874" checksum="ADA4CC31200CA344" modified="2016-01-20" version="1">MNQAAPRRHVFLDKAVPAAYKAAVALSEQAGAAAEAAGLDRRFVELVNLRISQINGCAFCLDLHHRNAIEAGESERRIAVLDAWSETSLFSEQEQAALQLAESITRLPEPDERTYAEDMARAVLGDEAYSAVAWVAITMNAFNRISITSHHPVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN01</accession>
    <name>A0A0Q8UN01_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribosome hibernation promoting factor</fullName>
            <shortName evidence="2">HPF</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">hpf</name>
        <name evidence="4" type="ORF">ASE19_21365</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Interacts with 100S ribosomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the HPF/YfiA ribosome-associated protein family. Long HPF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896153.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46382">
        <property type="protein sequence ID" value="KRC46382"/>
        <property type="gene ID" value="ASE19_21365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1766263at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044238">
        <property type="term" value="P:primary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00552">
        <property type="entry name" value="RaiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.505.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00839">
        <property type="entry name" value="HPF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034694">
        <property type="entry name" value="HPF_long/plastid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036567">
        <property type="entry name" value="RHF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003489">
        <property type="entry name" value="RHF/RaiA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032528">
        <property type="entry name" value="Ribosom_S30AE_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038416">
        <property type="entry name" value="Ribosom_S30AE_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16321">
        <property type="entry name" value="Ribosom_S30AE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02482">
        <property type="entry name" value="Ribosomal_S30AE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69754">
        <property type="entry name" value="SSF69754"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00741">
        <property type="entry name" value="yfiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="1 2" id="KW-0810">Translation regulation</keyword>
    <feature type="domain" description="Ribosom_S30AE_C" evidence="3">
        <location>
            <begin position="146"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="209" mass="23538" checksum="9143D1E655F932A6" modified="2016-01-20" version="1">MDVVVTGRHCEISDRFREHAAEKLTKLEKHDHRIIRVHVEVDCEPNPRQHDHSVHVELTAYSKGPVIRAEAAADDKMGALDLALDKMASQMRKAADRRRVHRGRRTPVSVGRALSDVPVEGLEVEVEAEESIERQVGPITVTGDGPLVVREKTHPATPMTLDQALYEMELVGHDFYLYVDKESERPAVVYRRRGYDYGVISLEVDVQGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN30</accession>
    <name>A0A0Q8UN30_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21315</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896143.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46372">
        <property type="protein sequence ID" value="KRC46372"/>
        <property type="gene ID" value="ASE19_21315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1177734at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="50"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="142"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="367" mass="39075" checksum="432AF3A6AF67D839" modified="2016-01-20" version="1">MSEFLFPHVRSGQRTLRLRLAAVGLGGFLALGLLAGVLALQTLGTLSSDVRVTVQLPTVGDTLGINSDVKYNGLRVGRVIEVDPVAHAAETGWDGPTAVVLVEPQHADLIPASVTARVLPGTLFGNEYVDLVTASATTTATAAHLDEGDVVRADTSKATLRLMDTFSATQRLLAAVDPAQWDTALSQLADSLDGRGAELAALVRDGEAFLGRWEDVQPQVRRDLDLLADDSDLMADIEPQLVSALRDSRPVARTLVEEQQGTTTLLQGLTRVLDGEDGVTTFLRAHGGETARLLNATAANLEVFAQRHPAFAALLRKVPVLLRNGAAAVKNGRIQMEGVLAPQLLDPYDASDPADCPTYRGLRGQCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN78</accession>
    <name>A0A0Q8UN78_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AAA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21705</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896214.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46444">
        <property type="protein sequence ID" value="KRC46444"/>
        <property type="gene ID" value="ASE19_21705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13401">
        <property type="entry name" value="AAA_22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="26"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="237" mass="25212" checksum="EC816C35EE2071C8" modified="2016-01-20" version="1">MTQGRPLTAFIGRERALREARDLIGEARLVTVTGPGGIGKTRLAYELAARVDRAFPGAHVVELAALDARADVATAVAAALSVPDQSNTPPLRQVARHLDGARTLLVVDNCEHLLDSAAATIAELLSKVSGLSVVATSREPLGVPGEHSYILRPMALPRPGSTDRGTVEEAEAVRLLVDRARGFAPTFTITDGNRGAVARLCERFDGMPLAIELAAARLRSLSAEQVLARLDQRVRTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNM1</accession>
    <name>A0A0Q8UNM1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22560</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896356.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46587">
        <property type="protein sequence ID" value="KRC46587"/>
        <property type="gene ID" value="ASE19_22560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2048400at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021678">
        <property type="entry name" value="DUF3263"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11662">
        <property type="entry name" value="DUF3263"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="98" mass="11585" checksum="591B0F1914EDAFA6" modified="2016-01-20" version="1">MSAERSHQDATPVVPADLSDRDCAILEFERQWWKYAGAKETAVREQFDMSATRYYQVLNALIDRPEALAHDPLLVRRLRRLRSQRQRQRSARRLGFEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNS2</accession>
    <name>A0A0Q8UNS2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">dITP/XTP pyrophosphatase</fullName>
            <ecNumber evidence="6">3.6.1.66</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Non-canonical purine NTP pyrophosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Non-standard purine NTP pyrophosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Nucleoside-triphosphate diphosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Nucleoside-triphosphate pyrophosphatase</fullName>
            <shortName evidence="6">NTPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_20500</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>H2O + ITP = diphosphate + H(+) + IMP</text>
            <dbReference type="Rhea" id="RHEA:29399"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="ChEBI" id="CHEBI:61402"/>
            <dbReference type="EC" id="3.6.1.66"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>H2O + XTP = diphosphate + H(+) + XMP</text>
            <dbReference type="Rhea" id="RHEA:28610"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57464"/>
            <dbReference type="ChEBI" id="CHEBI:61314"/>
            <dbReference type="EC" id="3.6.1.66"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>dITP + H2O = dIMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28342"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61194"/>
            <dbReference type="ChEBI" id="CHEBI:61382"/>
            <dbReference type="EC" id="3.6.1.66"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the HAM1 NTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.66" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896381.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46612">
        <property type="protein sequence ID" value="KRC46612"/>
        <property type="gene ID" value="ASE19_20500"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035870">
        <property type="term" value="F:dITP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036220">
        <property type="term" value="F:ITP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017111">
        <property type="term" value="F:nucleoside-triphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036222">
        <property type="term" value="F:XTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009146">
        <property type="term" value="P:purine nucleoside triphosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00515">
        <property type="entry name" value="HAM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01405">
        <property type="entry name" value="Non_canon_purine_NTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020922">
        <property type="entry name" value="dITP/XTP_pyrophosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002637">
        <property type="entry name" value="Ham1p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029001">
        <property type="entry name" value="ITPase-like_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11067">
        <property type="entry name" value="PTHR11067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01725">
        <property type="entry name" value="Ham1p_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52972">
        <property type="entry name" value="SSF52972"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="139"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="168"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="19715" checksum="288057FFEEB432D4" modified="2016-01-20" version="1">MRRILAEHLTSVEVVGLDDVAPFDEPVEDQPTFEGNALLKARAGVAATGLPTIADDSGICVDALNGMPGVLSARWSGPPKDDDRNNELLLAQLADVPDERRTAHFACAVALAHPDGRQIVVDGRMPGSVVREVRGTGGFGYDVLFVADDRPGVTTAELSREDKDAISHRGKALREIAPLVADLLGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8URL6</accession>
    <name>A0A0Q8URL6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L27</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmA</name>
        <name evidence="8" type="ORF">ASE19_21150</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the bacterial ribosomal protein bL27 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896116.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46345">
        <property type="protein sequence ID" value="KRC46345"/>
        <property type="gene ID" value="ASE19_21150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1904463at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00539">
        <property type="entry name" value="Ribosomal_L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001684">
        <property type="entry name" value="Ribosomal_L27"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018261">
        <property type="entry name" value="Ribosomal_L27_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002792">
        <property type="entry name" value="TRAM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15893">
        <property type="entry name" value="PTHR15893"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01016">
        <property type="entry name" value="Ribosomal_L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00063">
        <property type="entry name" value="RIBOSOMALL27"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00062">
        <property type="entry name" value="L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00831">
        <property type="entry name" value="RIBOSOMAL_L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50926">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 8" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="TRAM" evidence="7">
        <location>
            <begin position="24"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="84" mass="8949" checksum="E28AD3768035D6C6" modified="2016-01-20" version="1">MAHKKGAASTKNGRDSNAQRLGVKRFGGQLVNAGEIIVRQRGTHFHPGSGVGRGKDDTLFALIPGSVDFGKKRGRRVVNILPGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUK3</accession>
    <name>A0A0Q8UUK3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ANTAR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18245</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893260.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48859">
        <property type="protein sequence ID" value="KRC48859"/>
        <property type="gene ID" value="ASE19_18245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1958442at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005561">
        <property type="entry name" value="ANTAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01012">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ANTAR" evidence="1">
        <location>
            <begin position="166"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="235" mass="24328" checksum="1718B2059F1D1872" modified="2016-01-20" version="1">MTQILAAISAPDEAGRSLPELLCIDCAETVRTAGVGMALMNDDGHQAVLGASGPLATQLEELQFDLGEGPALDASRTGRTVVHDDLGIDALARWPGFASAAVAAGVRAVTALPLQVGGIRLGSLCLYRSSSERLDDDQAGTARAYAEAGVAVLLDLQGQVGQNGILHPDLGEPVGYRAEVHQATGFLSVTASVGMAEALLLMRAHAYATERPLLDVARAILSGRLHIDPEEGDDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUM8</accession>
    <name>A0A0Q8UUM8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cellulase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_18310</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the glycosyl hydrolase 5 (cellulase A) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893273.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48872">
        <property type="protein sequence ID" value="KRC48872"/>
        <property type="gene ID" value="ASE19_18310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="809637at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071704">
        <property type="term" value="P:organic substance metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001547">
        <property type="entry name" value="Glyco_hydro_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00150">
        <property type="entry name" value="Cellulase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cellulase" evidence="3">
        <location>
            <begin position="250"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="440" mass="47580" checksum="A3173AD21FC5C6A7" modified="2016-01-20" version="1">MHTSTFERRLDGFAGVADSRVALSRVGVGHHGTRALVLRAVRTGPASVQAGRRVGAHRAGARYVVRGWARASARRTVALVVQEVKAGRVLQTRRVRLVAGPAVWRRLPVSITTRAVDSALRVRVRAPRLVMGNRVFVDDLTVTRVFRSAAPAPSTTTPPSGCTLSARGIPSCGVYVGAAHGSNTDPSTLESTLGGRLAVRRTYFTASGVDKAIATARTDLAAGRLPWISFKLPRSWEEMAAGRGDAWAKDIAQRLEALGGPVWVAFHHEPEGDGDIQAWRRMQEHLAPLVRTTAPHVAFTVVVTGWNQFYGAAQYRLSEIWPRGVKVDVAGFDIYQQYGVTKDGRTTTKWTDFADYYGKISTWAKSVGVSWGLGETGVTDAAAAARPAVISDSVDLMRTYGGIAYSYFDTTLNSVANWSLSTAAKRQSFASALTGTTRLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUS8</accession>
    <name>A0A0Q8UUS8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18120</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893237.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48836">
        <property type="protein sequence ID" value="KRC48836"/>
        <property type="gene ID" value="ASE19_18120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2097768at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="85"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="105" mass="11484" checksum="FF48EE90AB144484" modified="2016-01-20" version="1">MSIDQSLFGDDPEPEPAAAPAPAVAAITDWQVDLLRKALDARALPDMAARQAAIEQAAGRSLASLRELTFDEANAVLVRLAEDAPRRDGTSLWDQREDDTWIDRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUX3</accession>
    <name>A0A0Q8UUX3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19010</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893388.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48986">
        <property type="protein sequence ID" value="KRC48986"/>
        <property type="gene ID" value="ASE19_19010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="22"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="242" mass="27000" checksum="68DF6348B8FB55C3" modified="2016-01-20" version="1">MGVDDSGELLDGRRRRWQEHNQVRRQVIIDAAIAVLERQAPGEEFQVQAVADEASMSRTVIYRHFEDRSDLDRAVQRQICDDVGDQLLPALSYDGTPDQIIHRIVGNFIRWAEAHPALYWFADRDLSDWGPSPLSLAVQQVAEGIEGIMAVVVAALGVELSDDDRAALDPWVFGMIGAVFAAVRRWLERDVREPSIETCIDILSESIWLQINGMALSRGLNLPDLPVSDLLQTLSPSGSDEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV69</accession>
    <name>A0A0Q8UV69_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ZIP family zinc transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18425</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893840.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49110">
        <property type="protein sequence ID" value="KRC49110"/>
        <property type="gene ID" value="ASE19_18425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1469769at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="170"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="199"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="228"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="249" mass="24952" checksum="F35D14A17E2F1AC8" modified="2016-01-20" version="1">MPVWLQAGAWGLFAGGALVVGALVAWFVSVPQRVVASVMAFGAGVLISALAFDLVDEAERGGGLVATAVGFLAGASIYVTANVLLARRGAAHRKRSGDQQPSEQEHTGSGAAIAVGALLDGIPESVVLGLSLLSGNGVGVPVLAAIVISNLPEGLSSAAGMKRNGRSARYVFGVWTAIAVASGVAGLLGAALLEGASPELVAVITALAAGAILAMVSDTMIPEAFERTHLYAGFIATAGFMLAFAIERS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV70</accession>
    <name>A0A0Q8UV70_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19550</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49080">
        <property type="protein sequence ID" value="KRC49080"/>
        <property type="gene ID" value="ASE19_19550"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025361">
        <property type="entry name" value="DUF4265"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14085">
        <property type="entry name" value="DUF4265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="153" mass="16715" checksum="3982C8315749575B" modified="2016-01-20" version="1">MVFELETDAGGWPPVSSERVWAIGLGNDLYRVDNVPWFVRDLSVGDVVRAKAAGPDLNPVFVEMVERSDHVTIRLICRRQGPLEGDLARSLQPFTALGVYGEGAPQYGMLALDIAPSAPLDAIVATLRRGSEDGSWEYEEGRITQAWIEATAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UX53</accession>
    <name>A0A0Q8UX53_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_21380</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896156.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46385">
        <property type="protein sequence ID" value="KRC46385"/>
        <property type="gene ID" value="ASE19_21380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1827824at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="28"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="235"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="302"/>
            <end position="523"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="561" mass="61293" checksum="E5CD826CEA16910D" modified="2016-01-20" version="1">MLRDLWTRIAPAVRRALTFWRRSIQARVVASTVVLSAVIVSGVGWILLQQTRQGLLEHRVDVVLGEVDAEMGDARDRLEAASGREVNVGRQQRDLVDPIIDRGTSRGYSVVLAGPEGEDIPLREGGGEYTSGLDLVSVPEDLEAHFDGVSRTTAWTYTDIVSHPGGDDDADVESVPGIIVGSQVQLPSDGKTYTLYYLFPLTEEQETLGLVTRALLTAAGLLLALVAGLTWLVTRQVVTPIRMARQVAERLAAGRLQERLQVTGEDDIARLAYSFNQMATSLQRQIRQLEELSWVQRRFVSDVSHELRTPLTTVRMASDLIHDARTDFDPATARAAELLQAELDRFESLLVDLLEISRFDAGAAVLVPEDVNLDDVVNRVVTAAQPLADQRGVRVVVEHPDDPVRAQVDSRRVERILRNLVTNAIDHALADDPTEVVVVRLASDDEAAAITVRDHGIGLAPGEAAMVFNRFWRSDPARARTSGGTGLGLAIAQEDAHLHGGWLQAWGRTGQGAQFRLTLPRHEGITLRHSPLPLIPGDAVSSEAAVVAAPDTVVPTREVER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXX6</accession>
    <name>A0A0Q8UXX6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16105</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893602.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50134">
        <property type="protein sequence ID" value="KRC50134"/>
        <property type="gene ID" value="ASE19_16105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1384440at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.620.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025859">
        <property type="entry name" value="AurF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012348">
        <property type="entry name" value="RNR-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11583">
        <property type="entry name" value="AurF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="322" mass="37062" checksum="AB1FB33D998DBD8F" modified="2016-01-20" version="1">MGSIGTSQQDYQDLLRTLSEASVDHHFDAFVDIAWDAPENRIDPLDPRWILPKVDALGRTEWYRSLPRERQIEVGFYRQTNVVKVGLQFEQVLIAGLMMYCLDLPNGRPEFRYSTHEATEECHHTQMFQEFVNRTALDVAGSHSLFRALGPFLPLAAKHLPFIFFIGVLGGEEPIDYVQKVMLRSGEDMHPLLERISQIHVAEEARHIGFAHQYLEHRAPRLGRFHRAFASVLTPVLMRVLCDAIVVPGKKAVRDMGIPPEVVREVWWESPESREFLRDMFGDVRMLAEELGLMNPVSRRIWRRLGIAGRPNRFRSEPARAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY06</accession>
    <name>A0A0Q8UY06_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16225</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893622.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50154">
        <property type="protein sequence ID" value="KRC50154"/>
        <property type="gene ID" value="ASE19_16225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1748559at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="2">
        <location>
            <begin position="48"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="170"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="199" mass="21286" checksum="C00AF070E7978D6C" modified="2016-01-20" version="1">MNEQQPEKVGQDTAAATAVAEEQGLLFTDDVSPLPSDLGYRGPTACNAAGITYRQLDYWARTGLIEPSVRGAKGSGSQRLYSFRDILILKIIKRLLDAGISLQNIRTAVSHLRERGTDDLTQVTLMSDGASVYECTSNDEVIDLLQGGQGVFGIAIGGVWREIEGTLAQLPSESASETEQAEDVSGDELAARRAARNAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYL7</accession>
    <name>A0A0Q8UYL7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Exlusion protein FxsA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16430</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893660.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50191">
        <property type="protein sequence ID" value="KRC50191"/>
        <property type="gene ID" value="ASE19_16430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2002498at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007313">
        <property type="entry name" value="FxsA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35335">
        <property type="entry name" value="PTHR35335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04186">
        <property type="entry name" value="FxsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="9"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="84"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="133"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="154" mass="16913" checksum="47F18054020BEAF6" modified="2016-01-20" version="1">MSRRRSRRAAVLLFLAFVVMPVLEIYVLIQVGQAIGPWWTILLLVLDSILGAWLIKREGRRAWQALRTRIETGQMPHRELADGALVVLGGAFMLSPGFVTDALGILLILPVTRPVFRGLLTSYAVNQVAKRATTMPGNGTRPGPDVVQGEVVDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYQ9</accession>
    <name>A0A0Q8UYQ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Dihydrodipicolinate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_16830</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893729.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50260">
        <property type="protein sequence ID" value="KRC50260"/>
        <property type="gene ID" value="ASE19_16830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="803114at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008839">
        <property type="term" value="F:4-hydroxy-tetrahydrodipicolinate reductase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045760">
        <property type="entry name" value="DAP_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000846">
        <property type="entry name" value="DapB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19328">
        <property type="entry name" value="DAP_DH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01113">
        <property type="entry name" value="DapB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DapB_N" evidence="3">
        <location>
            <begin position="10"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="DAP_DH_C" evidence="4">
        <location>
            <begin position="155"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF19328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="368" mass="38463" checksum="2A44EFD2CCD77BC3" modified="2016-01-20" version="1">MADENTFYPIPVLVWGTGNMGRASIRAVVANPGLELAAVVVSDEAKAGRDAGDLADLGRTTGVLATRDADAALATLKGGGAVAYTASGELRPEEAAVDIARALAGGAVVVSPSVYALYDPRNAPAELREPLEKACAEGGSALFMSGIDPGWGNDLLPALVSGLASEVDQVRCQEIFDYSTYDAEDSVRYIVGMGQPMDYEPMMVAPGIPSMVWGGQVQLIARALGVEVDELRETVDRQALDATVTTALGDFEAGTQGALRFEVQGIVDGEPRIVIEHVTRITNACALDWPLPPDGGDGAHRVIIEGRPRIEINVEATDEGGNRAAGGNATAANRLVNAIPWLRTAAPGLYDGLDVPLLPSTYLSKQVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZY8</accession>
    <name>A0A0Q8UZY8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21330</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896146.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46375">
        <property type="protein sequence ID" value="KRC46375"/>
        <property type="gene ID" value="ASE19_21330"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="40"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="2">
        <location>
            <begin position="119"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="377" mass="39818" checksum="D0F75599E63E9D2C" modified="2016-01-20" version="1">MITRRNVFLGLGAALVLAVALSGVRLVGWLGGDDPEALVVTADFADTTGVYVGNEVTYLGVHVGEIVDVEPHGTTMRVVMHLDPDTRVPADAGAEILQGSLVTDRFIEIGPAWDGGPTLADGAHIDTDHTRSPATVDEIAKAIDDLVVALDSGKGRDGAAGLGDMLSTTAAALEGNGAHLRRALSESRDALEVVNAKDADLTAVSKNLVSLVTTLSRRDRRLRDFTRAAADTTGVLADQRQELVATLDGLDQLTRLTNRFLKDNAGVLGEDLAGLADVVDIVRNRQDSLEEAFDTMPTMAENFARAYDWELGRLRVQFAFSAGPFSAAFRSHTCRVFVAQLGPTGSGVCNLLFTTAGTGLLDPLLDGIYDGIPGGIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0F8</accession>
    <name>A0A0Q8V0F8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18205</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893252.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48851">
        <property type="protein sequence ID" value="KRC48851"/>
        <property type="gene ID" value="ASE19_18205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1347413at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="200" mass="21891" checksum="046D174393A8BFF9" modified="2016-01-20" version="1">MYARSSTFRGRPEGIEAGIRFVEDEAGPKLAGTEGCRGLSLLVDRTTGYCIATSSWDTEEAMTDSDGSLRPVRERGRDLLGASMQVDSWEIVVMHRTHHGACCRVSWLDGDVDAMAETFRTALLPRLEEVDGFCSASMLVDRLGGLCCITTAWASEEAMTASRTTADTLRERLATEVSGIVVEVHEFDLAYAHLHVPEMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0W4</accession>
    <name>A0A0Q8V0W4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AAA family ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19425</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893461.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49059">
        <property type="protein sequence ID" value="KRC49059"/>
        <property type="gene ID" value="ASE19_19425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1833499at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038729">
        <property type="entry name" value="Rad50/SbcC_AAA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13304">
        <property type="entry name" value="AAA_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13476">
        <property type="entry name" value="AAA_23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="46"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="244" mass="27104" checksum="8F2B1AC90D7ABDD5" modified="2016-01-20" version="1">MDFDQPPVVRVVADRGGLPRHGLRDDEWPFTVPAIAQVLREDLDLSPGVTFLVGENGSGKSTLVEAIAVAYGLSPEGGTRHGQHSTRATESPLHRVLRLQRGIGTGRWGFFLRAETMHGWFTFAEQHASSGDPVFHEMSHGESFLAVLRSRFDSPGFYCLDEPEAALSFSSTLGLMSRLQDLVDDGGQVLCATHSPVLASLPGASILEVGDWGLRRTTWEELELVQHWRRYLDDPQRYLRHFLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0X5</accession>
    <name>A0A0Q8V0X5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19525</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49075">
        <property type="protein sequence ID" value="KRC49075"/>
        <property type="gene ID" value="ASE19_19525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914252at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="105" mass="11443" checksum="55630E9CED81774C" modified="2016-01-20" version="1">MTVTRPFTRQSTVLELATTLPGRAFKAMIVRQLPPVATEKERQELEDMTLGLPLETLVELSEGKLTWGIADSLLDLANRKPHRVIGRGVGAGAGALKKVTRPIRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1C2</accession>
    <name>A0A0Q8V1C2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15235</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51436">
        <property type="protein sequence ID" value="KRC51436"/>
        <property type="gene ID" value="ASE19_15235"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="79" mass="8693" checksum="3EE187541EA66E72" modified="2016-01-20" version="1">MDISAPRVVGIAVAAATSAESGISRPGVTSRSWAIRSRVSHRDRTAPRVRRPRTLCRPDVRRHASTRTVGSKPRRFSNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1X2</accession>
    <name>A0A0Q8V1X2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_14820</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51470">
        <property type="protein sequence ID" value="KRC51470"/>
        <property type="gene ID" value="ASE19_14820"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="69"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="100"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="130"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="178"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="235"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="65"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC51470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="269" mass="28094" checksum="CD6F8E579A069F7E" modified="2016-01-20" version="1">MGMAWLTVVLGAAVLAPLLPLGNADDSVKGLTAPIFASPEGLGGAYPLGTNNYGLDVLARVVYGARTSLLVALLAVLIGTCVGGLVGLVSGFVRGTTDRVVGILSNALLAVPPLILLIALGTVLDPSVRSIAFALSLLTIPSMVRLARANTITVAQREYVLAARALGAGRLRLMLREVLPNVVLPVLSLAVVMISVLVVAEASLSFLGIGIEQPRPTWGNMIAEGQGGVMEQHPYIVVVPGICLFLTVFSFNLLGEKAQQRWDPRSAKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4J3</accession>
    <name>A0A0Q8V4J3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Orotidine 5'-phosphate decarboxylase</fullName>
            <ecNumber evidence="3">4.1.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">OMP decarboxylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_19330</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H(+) + orotidine 5'-phosphate = CO2 + UMP</text>
            <dbReference type="Rhea" id="RHEA:11596"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57538"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="EC" id="4.1.1.23"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 2/2.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.23" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893443.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49041">
        <property type="protein sequence ID" value="KRC49041"/>
        <property type="gene ID" value="ASE19_19330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1181405at2"/>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00120"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004590">
        <property type="term" value="F:orotidine-5'-phosphate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011995">
        <property type="entry name" value="OMPdecase_type-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001754">
        <property type="entry name" value="OMPdeCOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43375">
        <property type="entry name" value="PTHR43375"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00215">
        <property type="entry name" value="OMPdecase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00934">
        <property type="entry name" value="OMPdecase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02127">
        <property type="entry name" value="pyrF_sub2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OMPdecase" evidence="7">
        <location>
            <begin position="16"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00033428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC49041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="277" mass="28781" checksum="0275938F4112D186" modified="2016-01-20" version="1">MTFGARVAAAMEERGQFCVGIDPHSALLHDWGYDDDVAGLEAFALGAVEAVAPYASVVKPQSAFYERFGSRGVAVLERVITESRAAGALVLLDIKRGDIGSTSQAYADAYLDPSSPLASDAITISPYLGFGSLLSFVDTARRFDAGLFVLAATSNKEGPEVQEAVTSEEYGARTVASAMLDHLRELNAGATPLGSFGAVVGATIDGNGLDFALNGPILAPGYGEQGGTSADILRIFGSSARHVLASSSRGVLRLGPDPVAMRDAVLRANDELRGLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5M9</accession>
    <name>A0A0Q8V5M9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09935</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894667.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52732">
        <property type="protein sequence ID" value="KRC52732"/>
        <property type="gene ID" value="ASE19_09935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1719670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="161" mass="17483" checksum="4F6BB8D4DBF50715" modified="2016-01-20" version="1">MNPSASITIDAPIDQVWAVMLDTERYGEWNPFVERADTAQPAAVGNPIVLHVVWANGRRTRSPERITALDGPTTDPATGTTTAVMSYVYEGLPSRLGLVRGVRHQRLTQQAGGPTSYDTVEEFSGPLVKLAGPGRVADGFRRHAEGLKRRAEEWTASTPEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5N9</accession>
    <name>A0A0Q8V5N9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_19420</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893460.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49058">
        <property type="protein sequence ID" value="KRC49058"/>
        <property type="gene ID" value="ASE19_19420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014325">
        <property type="entry name" value="RNA_pol_sigma-E_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02983">
        <property type="entry name" value="SigE-fam_strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="19"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="7">
        <location>
            <begin position="107"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="83"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC49058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="172" mass="19243" checksum="19C5BB3F12552EDA" modified="2016-01-20" version="1">MGVKAHSSGRQAAEFTAFVRETGTQLHHAAMLLTGDHHLAEDLTQATYAKVFVHWRRVQAADSPLAYARTTLLNTFLSHRRLRRSTERPAELTPVDTGHEPDPGTRLDLLAALGTLPPLDRAIVVLRYWEDRSVAETATDLGLAETVVRTRARRALQRLRPLIDPIHERTSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5Q7</accession>
    <name>A0A0Q8V5Q7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">UDP-glucose 4-epimerase</fullName>
            <ecNumber evidence="5">5.1.3.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_09445</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>UDP-alpha-D-glucose = UDP-alpha-D-galactose</text>
            <dbReference type="Rhea" id="RHEA:22168"/>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
            <dbReference type="ChEBI" id="CHEBI:66914"/>
            <dbReference type="EC" id="5.1.3.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Carbohydrate metabolism; galactose metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.2" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894589.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52651">
        <property type="protein sequence ID" value="KRC52651"/>
        <property type="gene ID" value="ASE19_09445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1597849at2"/>
    <dbReference type="UniPathway" id="UPA00214"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003978">
        <property type="term" value="F:UDP-glucose 4-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006012">
        <property type="term" value="P:galactose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005886">
        <property type="entry name" value="UDP_G4E"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01179">
        <property type="entry name" value="galE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0520">NAD</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="8">
        <location>
            <begin position="3"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00018569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC52651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="334" mass="36597" checksum="21EAA5F1F24DB196" modified="2016-01-20" version="1">MKVLVTGGAGYLGSITAKALEESGHVPVVLDSLLTGPRQYVGDRIFYEGDIADRALLRRIIEEHPDLDATIHMAARIVVPESVALPYEYYRDNVAKSLEMFDELTTLGKPRILFSSTASLYALKPAFEVTEEDPVDPTSPYARTKRMMEMVLEDLSKATDLRAIILRYFNPIGADPQLETGYHLRDATHVVPLMAQTALGIRDTFTLTGTDHPTRDGTGIRDYIHVWDLARAHVRAVEEFDAVLSKVDATFTYINLGSGDGVTVRELLAAVERVVGKPVPVTEAPARPGDAAGAFANADKARELLGWQTELSLDEAIASALAWGEKREDVLGYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5S8</accession>
    <name>A0A0Q8V5S8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">LacI family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_10335</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894738.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52805">
        <property type="protein sequence ID" value="KRC52805"/>
        <property type="gene ID" value="ASE19_10335"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1796334at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="4">
        <location>
            <begin position="8"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="HTH cro/C1-type" evidence="5">
        <location>
            <begin position="9"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="344" mass="36376" checksum="86A664DDC8CDE078" modified="2016-01-20" version="1">MENPRPPATLADVAERAGVSRQTVSNAINNPDLLRPETLVRVQDAIDALGYTPNHAARHLRTRSSRLVGLRLTPAQEFTANMAMDRFVRALVEAAREVGYHVLLFSGGPVAEGDVPDPLGGYDDLLRSTAVDAFVVTDTYLGNPQTVELARRRAPFVAFGRPWDDPDATHPWVDVDGSSGVAAATTHVRGQGHERIAWLGWEPGSRIGEDRRAGWFRAMAAHGLPTAGLEAAVADSVDAGRAAAGVLLDNGATAFVCASDTLAVGALHALGDRGIAPGRDVAVVGFDDSQVAQVMGLTSVRQPLEQVAVELVGALTDLLSAAEHPDAEVLLTPSLEVRRSSTRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5V8</accession>
    <name>A0A0Q8V5V8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type III secretion protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09345</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894570.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52632">
        <property type="protein sequence ID" value="KRC52632"/>
        <property type="gene ID" value="ASE19_09345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1424100at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1690.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006135">
        <property type="entry name" value="T3SS_substrate_exporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029025">
        <property type="entry name" value="T3SS_substrate_exporter_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30531">
        <property type="entry name" value="PTHR30531"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01312">
        <property type="entry name" value="Bac_export_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00950">
        <property type="entry name" value="TYPE3IMSPROT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160544">
        <property type="entry name" value="SSF160544"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="84"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="144"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="183"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="377" mass="40838" checksum="03C60E205EC10E97" modified="2016-01-20" version="1">MSDQEKTEKPTPKRKKQARKDGQVPRTPELGSWLGLFMVTLAMGPLLDHEGDALRTMLTTHLRAAQDPSVPLALSLLGDAARHVFLTLVLLGSMALVVGVVSALAQGGFYLSPKLAKPDPKKLNPIQGAKRAFGMHALWEGVKVLVKSSVVALIAWGAIRSIMPLVGGLLPIDNVIAHATAEVSHLLMTVSVAGLAMAAADYAMMRRKIGKQIRMSHSEIKQEHKQAEGDPMVKSAIRSRQLAAARNRMFADVGTADVLLVNPTHVAVALRYDPERGAPRVVARGAGAIAAKIRERAAEERVPLVQDVPLARALYRHCQVGQEIPRELWAAVAQVLAFVLSRRNAGQYGGEHRTPRRTDELPEVLAHARRRRVAGGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V648</accession>
    <name>A0A0Q8V648_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nitrogen fixation protein NifU</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15965</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893579.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50112">
        <property type="protein sequence ID" value="KRC50112"/>
        <property type="gene ID" value="ASE19_15965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1793654at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06664">
        <property type="entry name" value="IscU_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002871">
        <property type="entry name" value="NIF_FeS_clus_asmbl_NifU_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10093">
        <property type="entry name" value="PTHR10093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01592">
        <property type="entry name" value="NifU_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NifU_N" evidence="1">
        <location>
            <begin position="10"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="156" mass="16747" checksum="0EB9FBC24D912FA4" modified="2016-01-20" version="1">MTAQDLDALYQEIILDHYKHPHGKGLREADPDHSAEVHHVNPTCGDEVTLRVHLADGVVEDVSYDSVGCSISQASASVLHDLVVGKSVDEAMAIHQEFLTLMQGKGTVEPDEDVLEDGIAFAGVAKFPARVKCALLSWMAWKDATAQVVAGDGDKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V676</accession>
    <name>A0A0Q8V676_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase</fullName>
            <shortName evidence="3">SEPHCHC synthase</shortName>
            <ecNumber evidence="3">2.2.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Menaquinone biosynthesis protein MenD</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">menD</name>
        <name evidence="6" type="ORF">ASE19_10095</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>2-oxoglutarate + H(+) + isochorismate = 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylate + CO2</text>
            <dbReference type="Rhea" id="RHEA:25593"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29780"/>
            <dbReference type="ChEBI" id="CHEBI:58818"/>
            <dbReference type="EC" id="2.2.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
        <text evidence="3">Binds 1 thiamine pyrophosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Quinol/quinone metabolism; 1,4-dihydroxy-2-naphthoate biosynthesis; 1,4-dihydroxy-2-naphthoate from chorismate: step 2/7.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Quinol/quinone metabolism; menaquinone biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the TPP enzyme family. MenD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.9" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894693.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52760">
        <property type="protein sequence ID" value="KRC52760"/>
        <property type="gene ID" value="ASE19_10095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="897995at2"/>
    <dbReference type="UniPathway" id="UPA00079"/>
    <dbReference type="UniPathway" id="UPA01057">
        <property type="reaction ID" value="UER00164"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070204">
        <property type="term" value="F:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009234">
        <property type="term" value="P:menaquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01659">
        <property type="entry name" value="MenD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004433">
        <property type="entry name" value="MenaQ_synth_MenD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012001">
        <property type="entry name" value="Thiamin_PyroP_enz_TPP-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42916">
        <property type="entry name" value="PTHR42916"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02776">
        <property type="entry name" value="TPP_enzyme_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004983">
        <property type="entry name" value="MenD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00173">
        <property type="entry name" value="menD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 3" id="KW-0464">Manganese</keyword>
    <keyword evidence="3" id="KW-0474">Menaquinone biosynthesis</keyword>
    <keyword evidence="1 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TPP_enzyme_N" evidence="5">
        <location>
            <begin position="12"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="176"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="546" mass="57194" checksum="5DDE972A00A9383B" modified="2016-01-20" version="1">MSPDDPGSAAALAEACVAWLVRAGVTDVVAAPGSRNAPLLYAVWAAAQSGGPRLHTRIDERTAGFLALGLTKSGARAAVVTTSGTAVANLHPAVLEACHSGIPLVVVSADRPARLRGTGANQTTDQVGIFSPFVTTHDVVSLADLAAVVAPDDAPTHLNLQLDAPLVPTAPAALVPAHQHRDRPNSRALRPGPPSTTLEPGPRTVVVAGDDAGPRARQLAEAAGWPLLAEPSSGARTGELALRTYRLLLGTELGGRIERVVVFGRPTLSRPVTRLIERSDVEVLVVPCPGVWPPAPPGSTRIDGAWWEGDEPDDPAWLEEWRAADRALARRIDRFLAEQPTLTPYDVAAATHAALPAGGLLVVGASSPIRDLDLVARPTPVGSRRKVIANRGLAGIDGTISTAIGAALGRRDSTRNLALMGDLTFLHDQTALVLGPEEARPDLTIVVPNDDGGAIFSMLEQGAPEHAASFERLFGTPHGTDLGSLCAAARIPHLRVTSRPELDQALASPNGGIEVVEAVVSRTDRRQLDARIRELTTEPGEQVPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V699</accession>
    <name>A0A0Q8V699_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RNA polymerase subunit sigma-24</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_11080</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894873.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52940">
        <property type="protein sequence ID" value="KRC52940"/>
        <property type="gene ID" value="ASE19_11080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1469807at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="20"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="7">
        <location>
            <begin position="117"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="391"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="391"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="419" mass="45371" checksum="1D2CE85276238195" modified="2016-01-20" version="1">MADATTADAITATWRLESARLVGALARMTRDVELAEDLAQDALVAALEHWPTSGVPENPAAWLMTTAKRRAVDTFRRAETLRRKTDELGHAAREVSTMPDLDAQVDHIEDDVLRLVFLCCHPALTPESRAALTLRLVGGLTTDEIARGFLVPSTTMGQRISRAKKTLAEAGAELELPTGDERTRRLDDVMAVVYLVFTEGYVATAGDDWTRPDLAQEGIRLARLLAGIAPEEPEVHGLQALLELQGSRIPARTDADGEPVLLDDQDRDRWDQLLVRRGLAALTRAEELASRGLPVGRYYLQAAIAAVHARSASAKDTDWTRIARLYDVLAAAAPGPVVEVNRAVAHGRAAGPAAGLAVLDAIDPGALRDSPLVPSVRGDLLERAGRQAEAAEQFDEAARRTRNEGERALLQRRAASNRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6J5</accession>
    <name>A0A0Q8V6J5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Triosephosphate isomerase</fullName>
            <shortName evidence="3">TIM</shortName>
            <shortName evidence="3">TPI</shortName>
            <ecNumber evidence="3 4">5.3.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Triose-phosphate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">tpiA</name>
        <name evidence="5" type="ORF">ASE19_15865</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>D-glyceraldehyde 3-phosphate = dihydroxyacetone phosphate</text>
            <dbReference type="Rhea" id="RHEA:18585"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="5.3.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate from glycerone phosphate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 4">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the triosephosphate isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.1" evidence="3 4"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893560.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50093">
        <property type="protein sequence ID" value="KRC50093"/>
        <property type="gene ID" value="ASE19_15865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1266295at2"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00189"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004807">
        <property type="term" value="F:triose-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00311">
        <property type="entry name" value="TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00147_B">
        <property type="entry name" value="TIM_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035990">
        <property type="entry name" value="TIM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022896">
        <property type="entry name" value="TrioseP_Isoase_bac/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000652">
        <property type="entry name" value="Triosephosphate_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020861">
        <property type="entry name" value="Triosephosphate_isomerase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21139">
        <property type="entry name" value="PTHR21139"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00121">
        <property type="entry name" value="TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51351">
        <property type="entry name" value="SSF51351"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00419">
        <property type="entry name" value="tim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00171">
        <property type="entry name" value="TIM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51440">
        <property type="entry name" value="TIM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 3 4" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="3 4" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="2 3 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="12"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="243"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="active site" description="Electrophile" evidence="3">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="176"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="182"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="265" mass="27965" checksum="71E5D52EE98E756F" modified="2016-01-20" version="1">MVSTRTPLMAGNWKMNLNHAEAVVLVQKLAWTLSDKRHDYGKVEVVVVPPFTDIRSVQTLVDGDRLSIRYGAQDVSQHAGGAYTGEISAAMLAKLGCSYVVVGHSERRQYHGETDAVVNAKAKAALGEKITPIVCVGEGLDVRQAGEHVPYTMAQVEGSLAGLSKKQVAGLVIAYEPVWAIGTGEVATPDDAQEVCAAIRGQVRESYGDEAADSVRILYGGSVKAANVAGIMTKADVDGALVGGASLEADEFGGICRFYDMPVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V747</accession>
    <name>A0A0Q8V747_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_11780</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894992.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53062">
        <property type="protein sequence ID" value="KRC53062"/>
        <property type="gene ID" value="ASE19_11780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="12"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="139"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="253"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="412" mass="45660" checksum="01BD542C35CBC4EA" modified="2016-01-20" version="1">MDFAFDARTEGLRENLLDLMESHVLPAEQVFHEQLGELDDRWAWDSTPVMKELRAEARSRGLWNLFLPGEHADVEGAGLTNVQYAALAEISGRSIHLAPAMMNCAAPDTGNMEVLHMFGTPEQKAQWLEPLLNGDIRSAFAMTEPDVASSDATNIELSIVRDGDEYVLNGRKWWITGAMNPNCQIFIVMGKTDPTADRHRQQSMVLVPRDTPGLEVLRGMEVYGYDDHEHGGHAELRFTDVRVPVSNLIGEEGGGFGVAQARLGPGRIHHCMRSIGIAERAIEMMCERSQERVAFGRPIADQGTVRTWIAESRVKLEQLRLLVLKTAWLMDTVGNKGAHTEIQAIKIATPETVQWILDKAIQVHGAGGLSQDFPLANMYAGIRTLRFADGPDEVHKNALAKAELSRQAARRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V781</accession>
    <name>A0A0Q8V781_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Carnitine dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13165</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895763.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53301">
        <property type="protein sequence ID" value="KRC53301"/>
        <property type="gene ID" value="ASE19_13165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="969868at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="387" mass="41092" checksum="B25B794EADDB408D" modified="2016-01-20" version="1">MTFELGQGTGPLKGLKVVEIAGIGPSPHACMILADLGADVIRVERPGGQMLTGGSHDLLNRGRPSVALNLKDPEAVATVLDLVEQADVLVEGMRPGVAERLGFGPDECLARNPRLVYGRMTGWGQDGPWSQAAGHDMNYIAITGTLHGLGQTKDKPQFPTNLVGDFGGGSTYLVIGILAAVFEAKASGRGQVVDAAIVDGTANLNAMTSAFLAGGGFKEERAANLLDGGAPYYDIYETSDGEHMSVGALEPQFYDLFVKLLGIEGTAPDRWDLARTDELRELIAATFLTRTRDEWCAIFDGTDACVAPILRISEAPDHPHIKAREIFVEHEGIVQPQPAPRFSRTKATLSHPPAPGAGAHTREALAAWGIKDVDGLVERGAAVQITE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7B1</accession>
    <name>A0A0Q8V7B1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">FAS1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12940</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895722.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53260">
        <property type="protein sequence ID" value="KRC53260"/>
        <property type="gene ID" value="ASE19_12940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1776069at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036378">
        <property type="entry name" value="FAS1_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000782">
        <property type="entry name" value="FAS1_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02469">
        <property type="entry name" value="Fasciclin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00554">
        <property type="entry name" value="FAS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82153">
        <property type="entry name" value="SSF82153"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50213">
        <property type="entry name" value="FAS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359767" description="FAS1 domain-containing protein" evidence="2">
        <location>
            <begin position="25"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="domain" description="FAS1" evidence="3">
        <location>
            <begin position="78"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="222" mass="22401" checksum="0D0DD380F16F894F" modified="2016-01-20" version="1">MKLQKIRRSAGAGIAVLALTATFAACSSEDDEPKSGSDDTSSDTSDSPMAEGAAADTFGPGCSAIPTSGKGSFDGMVKDPVATAASNNPLLSTLVTAVTSIDGLADTLNGAEALTVFAPYNDAFAEIPAKDLNGLVMEGKEKGDQSTLYKILAHHVLGANDKADAVVGKQDTLVGDQLTISGDAESGMTVSDGTVTANVLCGNIPTANATVYVIDKVLTGVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7D0</accession>
    <name>A0A0Q8V7D0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Exopolyphosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13035</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895738.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53276">
        <property type="protein sequence ID" value="KRC53276"/>
        <property type="gene ID" value="ASE19_13035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="361195at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010839">
        <property type="entry name" value="AtuA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07287">
        <property type="entry name" value="AtuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="574" mass="60828" checksum="4260ABA43354B8A4" modified="2016-01-20" version="1">MNPLKVANCSGFYGDRLSALKEQLEGGDVDVITGDYLAELTMLILGMDTLRDADLGYARTFLKQLEGTLGLALDKGVRIVSNAGGLNPAGLATQIQKLAAELGLDAKVAYVEGDDLRQANLFDAALTANAYLGAFGIASALTRGADIVVTGRVTDASVVVGPAIAHHGWLPTDHDALAGAVVAGHVIECGTQATGGNFSGFTDLFRAGAPMTKPLGFPIAEIAADGSSIITKHDGTGGAVTVDTVTAQLLYEIQTTRYLNPDVTTHLDSIRLRDVGPDRVEISGVTGGPPPEKLKVAVNTLGGYRNQVEFVLTGLDIEAKAEWLRSQLDPQLTAADVTWTQTPSRGGDADTEEGASVILRCIGKDPEAGPLGKPFTGPAVELALASYPGFTMTTPPQKPSPFGIYKPEYVERSAVEHTVVHHDGSREVIADPTTFVDPAELDTELGKRPSPYPAPADTITRRMPLGSFVHARSGDKGGNANLGLWVKNDGSPKYEARVQWLAKIVKDRKVRELVPEAKDLDVDVYVLPNLGAVNIVIHGLLGDGVAASTRFDPQAKGLGEWVRSRIVHIQEDLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7K3</accession>
    <name>A0A0Q8V7K3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12105</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53119">
        <property type="protein sequence ID" value="KRC53119"/>
        <property type="gene ID" value="ASE19_12105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="176" mass="18946" checksum="E3BBC879536326AB" modified="2016-01-20" version="1">MIRTDGISAVSYRGVAAHAEVPLGSMTYYFPTLEGLILSALDSTRSDLEPRYAAPLRGARTPADVVDALVDATIGSTSPSLTDIRLYEEIRHYGARDPKVAAVLQAVEDDALAMLQPVVPTSIALAINALLWGWWSHRLAHPDTSLDEATVRRPYEAIVALAGPDHPFQAEGLNDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7R0</accession>
    <name>A0A0Q8V7R0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_13010</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895734.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53272">
        <property type="protein sequence ID" value="KRC53272"/>
        <property type="gene ID" value="ASE19_13010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="10"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="124"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="238"/>
            <end position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="389" mass="41644" checksum="2B3A25CCC43C1FEA" modified="2016-01-20" version="1">MTQTAFTEPEERVALREAVKKLAGKYGREYVDKQAREGGKMTEMWLEMGQAGFLGVNIPEEFGGGGGGMSDLAAVLEESAAAGAPLLMMVVSPAICGSIISRCGTEEQKQRWLPSIADGTHLMAFGITEADAGSNSHQITTTATRDGDHWVLKGQKTFISGVDEAQSVLIVSRTEDAKTGKLKPALFVVPTDAPGFTKQPIPMSWNAPEKQFTLFLDDVRVPVDALVGDEDGGLWQLFAGLNPERIMGGAMSCGLARYALDKAVAYAKERSVWKDQPIGAHQGIAHPLAKVKIELEQARLLWQKAAALYDAGDDFTAGEYANMAKYAGGEVACNATDVAVHTHGGNGLTQEYGLGNMLVAARLGRIAPVSREMILNFVAMHSLGLPKSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V895</accession>
    <name>A0A0Q8V895_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Heme ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_16275</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893630.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50162">
        <property type="protein sequence ID" value="KRC50162"/>
        <property type="gene ID" value="ASE19_16275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1112046at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="345"/>
            <end position="546"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="383"/>
            <end position="390"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="546" mass="58718" checksum="3B487C891A11D25B" modified="2016-01-20" version="1">MSATLKVDGLSAGHGATALFSGLDLVVAPRDVIGLVGPNGAGKSTLLRTLAGELSPEDGSVTLAPASATIGYLPQETERRVGETVREFLARRTGVAAAQAAFDHATAQLEAEEPGADDAYAEALDRWLALGAPDLDERAEAVCADVGLAVDLVQPMTSLSGGQAARAGLASLLLSRYDVFLLDEPTNDLDLDGLARLERFVLDLSVAAVIVSHDREFLARTVNRIVELDLHQRAINVYGGGYESWLQEREIARRHAREAYDEYAGTVAQLQARASTQRAWAAQGVRNARRNINNEPDKSVRRFRAESSEKQAAKVRQSERALERLEEVEEPRKEWELRLEIAAAPRSGAVTAALREAVVQRGAFTFGPVSLELGWAEKIAITGPNGAGKSSLLAALLGRLPLTSGEAFLGPGVVVGEVDQARRLFEGDVPLVDAFQAQVPDWAPEPVRTLLAKFGLKTDHVVRPASTLSPGERTRAALALLQARGVNLLVLDEPTNHLDLPAIEQLEEALSSYPGTLLLVTHDRRMLAAVATTRELHVEAGRVSER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V903</accession>
    <name>A0A0Q8V903_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Diacylglycerol kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14795</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896914.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53588">
        <property type="protein sequence ID" value="KRC53588"/>
        <property type="gene ID" value="ASE19_14795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="869726at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003951">
        <property type="term" value="F:NAD+ kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017438">
        <property type="entry name" value="ATP-NAD_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001206">
        <property type="entry name" value="Diacylglycerol_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016064">
        <property type="entry name" value="NAD/diacylglycerol_kinase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045540">
        <property type="entry name" value="YegS/DAGK_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00781">
        <property type="entry name" value="DAGK_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19279">
        <property type="entry name" value="YegS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00046">
        <property type="entry name" value="DAGKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111331">
        <property type="entry name" value="SSF111331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50146">
        <property type="entry name" value="DAGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359829" evidence="1">
        <location>
            <begin position="21"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="DAGKc" evidence="2">
        <location>
            <begin position="3"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="306" mass="30895" checksum="362792AB329352C6" modified="2016-01-20" version="1">MSVASRSFAFLVNPSSGGGAAPKVVVPLTRALREAGATVEVTYTTSVAETPALVDAAVASGAVVVAVGGDGMLSSVAGAVAARDGVLAVVPAGRGNDFARMLGVPHTTAEQAALLLEGAERRVDLLRATSGDGTTHVVAGSVYAGVDARAGEIVDRSHWLPSKLQYPVAAVRALATYRPMDCVLEVDGVTSRHVAATVVVANSRYYGKGMAIAPDASVSDGLLDVIVIEAASRSGLIRSLPKVYDGGHVALDEVKVHTGHRVTLTGAYAGGGLVPVGADGEALPPLPASGAPLTVELLPEALRIIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V943</accession>
    <name>A0A0Q8V943_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CTP_transf_like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895293.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53861">
        <property type="protein sequence ID" value="KRC53861"/>
        <property type="gene ID" value="ASE19_07175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1465613at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CTP_transf_like" evidence="1">
        <location>
            <begin position="5"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="155" mass="17525" checksum="E1D63DD0E8297960" modified="2016-01-20" version="1">MTTVLTYGTFDLFHIGHLRLIERLAAMGDRLIVGVSTDEFNAGKGKKSVVSYDDRAAIVQAIKGVDLVLPERAWEQKRADIIEHEVDVFVMGDDWTGKFDELSDVCEVRYLPRTSGVSSTDIKEMLRTLDPVHIEEMQTALGTLTRLLEHYRDLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9C9</accession>
    <name>A0A0Q8V9C9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Thioesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07675</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895381.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53950">
        <property type="protein sequence ID" value="KRC53950"/>
        <property type="gene ID" value="ASE19_07675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1814691at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="213" mass="22915" checksum="8472608B4DD7002A" modified="2016-01-20" version="1">MNWHLPSDAPVDETAEVERQARVWRPLAAAARELVDLCVMSDVDEDEVRAAQADVEAAVARLRKVRRTQTLGQEHLTGGRRRPWGNPVIGLRNPIAPPIEVHSDPSGRAEADFHCGPAFEGPPGLVHGGVVSLVLDQVLGHAVGAAGRPGMTGTLTIVYRQGTPLGDLRIEAWVDREDGIKTWAKAHIIGPNGVTAEAEGVFILPRAFRTEGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9J4</accession>
    <name>A0A0Q8V9J4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07580</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895363.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53932">
        <property type="protein sequence ID" value="KRC53932"/>
        <property type="gene ID" value="ASE19_07580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1300218at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="843"/>
            <end position="863"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="520"/>
            <end position="547"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="915" mass="96117" checksum="FFEC49926C8A7423" modified="2016-01-20" version="1">MSEAQSLYVILSANATQYQRVMEAASREMRKFGGDVDDSSRKLDDAGQALDRYSGRLRIVLDALGAAGSAFIPLGGVAAAGAAGLGGLLGAAAVGAGGLLVATRGVGDALKEVEKARLEPTVANLQAAELALDRIAPAAREWVREFEQLMPLLEGIRDSGAQELFPGLTESLRNVEQLASVLEDIVAATSRAGGDAAASATASLTTDRWAPFLGFLENEAPAAIRDVTELVGTLAHAGAELWMSFDPGNDRFVSWLKDVANGFDEWASSPQGRQDVERFLDYVQQNGPAVEEFVVAIAEAFAQVTQAAAPLGGPVLQILTGFAKAVAAIADSDLGTPIFTAIAGYTALNRVLQVTAGLQTRIAGSSALGDGLRAGGVVGGIKALRGQERDIRATAAAAAKGTAALAGLTVAATGAADGVGLSNTASLAMLGTLAGPWGAAVGAGAGILLDFASAGDKAADGLKLVNDGLAATELETKKAALAQLKEQYADFLEPSSGWWDGFTDDFKAGLIVLGGGGDEAAATADKMRRLAREIRELEDTERGVAAQERVVEHLRVNRQAAMDTAASFITLGKSLNDSEVSLGDWIGELEEQTRALRDFRINAEEAADRGLRRGLIRELEAAGREGALRLAQLADASETEIRRANRAWAAGRREAELYGTGVYAAVEAFRDLPKEARTYIRAMGIPETMAEVEDLVTLYDLTGKERKALIRLVDHASGPIQDVIDKLNGVDGKSVDTFINVFKRNLTTGGGGRQPGGIDELLGADPKREDANGGLYDGPRRAFAGGGYGSGGRYYDRVSQIVKGGANILWGEQETGWEAYISGKPSQRERNLGIWAETGRRLGVERGPRGRESASGGRSGSRTVVVQAAMPDAVELVVDGHSFTAYVRGHAADVASRQLDVADRNGESNERMNWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA46</accession>
    <name>A0A0Q8VA46_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pyridine nucleotide-disulfide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15830</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893555.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50087">
        <property type="protein sequence ID" value="KRC50087"/>
        <property type="gene ID" value="ASE19_15830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1207398at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033891">
        <property type="entry name" value="TTC38"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16263">
        <property type="entry name" value="PTHR16263"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="437" mass="47386" checksum="8ACB20EBE5187B09" modified="2016-01-20" version="1">MGCCRDSYGYPLTTSRPAAEAYVDGVRDLLCLRTGAAHRIATAITLDPTFALGHATLALLGHEMCVQVDVRARLADARLHARRATGRERSHVHAVERHLAGDSAPLVAHVAAYPRDAVLLSVAMPTIAFAGVTDVPEQAWRIVEDAAPAYGDDPWINGLLAFVRQEQRRFDEAMDLSCRSLAAEPGGGHAAHARAHAHYETGDHAAGLRWMDAWVLGDGAATDSLTHFSWHAALHELSLGDVAAVRRRYDEQLQPRHAVGCRALVDTGSLLFRWALTPGGADVPTLDEVVRLTGPETLERPATAFLGMHAAVALLAVDDSSGLDRLARWCETRAGATHREVVAPLARAFALLAAGRWNEGADHLGRLGPQVWRVGGSDAQREIVEEARIAALLRAQRYDEARLLLDVRLDRRPAARDERWRAEAVAAADQAARILSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA58</accession>
    <name>A0A0Q8VA58_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08395</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the FPP/GGPP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895504.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54072">
        <property type="protein sequence ID" value="KRC54072"/>
        <property type="gene ID" value="ASE19_08395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1861068at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00685">
        <property type="entry name" value="Trans_IPPS_HT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000092">
        <property type="entry name" value="Polyprenyl_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033749">
        <property type="entry name" value="Polyprenyl_synt_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00348">
        <property type="entry name" value="polyprenyl_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="SSF48576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00444">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="306" mass="32958" checksum="82C032745CFDF302" modified="2016-01-20" version="1">MLATSRVREIVGRPEQPTLDENCRHLLSTKGKQVRATLLLEAARLGAGVDEEKAELAATVVEVVHLATLAHDDVIDDCQVRRGSPTVGARAGNVAAGITGAWLFARALELIAECGDRATERFAEAAKHIVDGEILEIKDLHNVDRTRERYLRSIDGKTAELFALSAHLGALLGGCSDEVVSAMEAYGRALGMAFQINDDLLDLLSVSAVMKKPTGKDLLQGVYTLPVIYAIAESDELRGQLLAGVTEANIRSVTQLVKSTSGVAMAEAECGEHFRAAEEALATVDEARVFHDLLHRSVPAMRQEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAU4</accession>
    <name>A0A0Q8VAU4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Protein rarD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_09975</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the EamA transporter family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894674.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52739">
        <property type="protein sequence ID" value="KRC52739"/>
        <property type="gene ID" value="ASE19_09975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1391352at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004626">
        <property type="entry name" value="RarD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22911:SF114">
        <property type="entry name" value="PTHR22911:SF114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00688">
        <property type="entry name" value="rarD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="70"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="102"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="126"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="149"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="177"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="209"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="240"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="265"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="9">
        <location>
            <begin position="6"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="9">
        <location>
            <begin position="150"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC52739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="302" mass="32185" checksum="670C788BA88DFF18" modified="2016-01-20" version="1">MDDARRGFLLGVTAYALWGAFPLFWPLLEPSGAVEILAHRIVWSVVVMGLLVVVLGRGPALRALVRDRRTVLLLVVAAITITSNWGTYIYGVNNGRVVETSLGYFINPLVTVLMGVLVLGERLRPLQWWALAVGFVAVAVLTLDYGRPPVVALVLAFSFGTYGLAKKAAGAGAIESLAFETAVIAPFALVYLTWLGAAGRGHFTGEGAGHVALLLASGVVTAVPLLCFGAAATRVSMTTLGLLQYLAPVIQFVLGITLLDERMPPGRWAGFGLVWLALTIFTVEALRHHRRVLAEAAEACAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VB43</accession>
    <name>A0A0Q8VB43_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_10680</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894800.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52867">
        <property type="protein sequence ID" value="KRC52867"/>
        <property type="gene ID" value="ASE19_10680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1107373at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005000">
        <property type="entry name" value="Aldolase/citrate-lyase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011206">
        <property type="entry name" value="Citrate_lyase_beta/mcl1/mcl2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03328">
        <property type="entry name" value="HpcH_HpaI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015582">
        <property type="entry name" value="Cit_lyase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HpcH_HpaI" evidence="5">
        <location>
            <begin position="33"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 4">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR015582-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR015582-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="362" mass="39156" checksum="5D561BEDE45DD808" modified="2016-01-20" version="1">MSHKSAKDFFRPLAVGAPAPLREIPARPSRAIHFFDPSNEKMAAKIPDMVGTVDVLLGNLEDAVKADNKVAAREGLVRIAQATDFGPTQLWTRINSLDSPWVLDDLTTLVPAIGDKLDVIMVPKVQGAEDIHYVDRILAQLEAKAGITRPILIHAILETARGVANVEEICGASPRMQGLSLGPADLAADRKMKTTRVGGGHPGYLVREDAPRGDDGLPIVDAPRAIFQQDLWHYTIAKMVDACATHGIYPYYGPFGDIKDTVACEDQFRNAFLLGCVGTWSLHPVQIKIANRVFSPSVEDIAHARRVVAAMGDGTGAVMIDGKMEDDASLKQCLVLVELAEKLAEIDPDLKATYDAIPTPEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBI6</accession>
    <name>A0A0Q8VBI6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aldehyde dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_12750</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3 6">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895688.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53225">
        <property type="protein sequence ID" value="KRC53225"/>
        <property type="gene ID" value="ASE19_12750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="293754at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006081">
        <property type="term" value="P:cellular aldehyde metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012394">
        <property type="entry name" value="Aldehyde_DH_NAD(P)"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036492">
        <property type="entry name" value="ALDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="7">
        <location>
            <begin position="14"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="active site" evidence="4 5">
        <location>
            <position position="248"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR036492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR036492-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="511" mass="54942" checksum="A919FCD5A56113F0" modified="2016-01-20" version="1">MARSTPPATRTAASTSSMIEVRNPATGRVIDRVPSRTPDEVARAAAAARAAQPAWEQLGFEGRARVLRRMQRWIVAHTDEIVSTICAETGKAYEDALLAEISYGAAAFGFWAESAPRYLADTRIRSRQPLVLGKRLVQRFRPIGLVGVIGPWNYPLTNSFGDCIPALAAGNAVLLKPSEITPLTSLLLARGLRECGLPDDVFTVVTGAGQTGAALVDEVDMVMFTGSTATGRRVAVQAAARLVPVSLELGGKDPMIVLADADIERAATHAAYYAMLNCGQTCISVERCYVEAPVYDEFVAAVTAKVRALRQGVPGGPGTVDVGSLTFPPQVDVVDRHVQDALARGARALTGGERPTGPGLFYPPTVLVDVDHDMAIMREETFGPTLPVMRVQDAAEAIRLANDSEYGLCASVFGRDLAAAEAVARRLEVGAVCVNDAVVNYTALELPMGGAKPGSGIGRRHGRDGITKYCRQQSLLVSRWHPRRDVHTYPYRRTRTRLLASALRLFNRGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCG4</accession>
    <name>A0A0Q8VCG4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Dimethylhistidine N-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_13425</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895809.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53347">
        <property type="protein sequence ID" value="KRC53347"/>
        <property type="gene ID" value="ASE19_13425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="775492at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035094">
        <property type="entry name" value="EgtD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019257">
        <property type="entry name" value="MeTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017804">
        <property type="entry name" value="MeTrfase_EgtD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10017">
        <property type="entry name" value="Methyltransf_33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018005">
        <property type="entry name" value="UCP018005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03438">
        <property type="entry name" value="egtD_ergothio"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_33" evidence="3">
        <location>
            <begin position="21"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF10017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="35236" checksum="368361D48C31A88E" modified="2016-01-20" version="1">MNARHEPDTETAQQADASLVDDVRRGLTRHPRTLPPRWLYDDHGSALFDEITRLPEYYPFTAEHSILQAHADEIVTASGATTLVELGSGTSEKTRLLLDAFTSTGQLARFAPVDVSEATLRSAAEQIAGTYPGLEVVPVVGDFTLHLAQLPQGGRRMVAFLGGTIGNLYLEERKAFLGALADLLQPGDSLLLGTDLVKSADRLIAAYDDSQGVTEAFIRNSLTVLNRELGGDFDQAGFSYIPFWDAHMERMDMRLRSEVPQRITLPGADLVLDLAVGEELRVEISTKFRVSKIAAELETAGLAVARVWTDEPGEFALTLAVKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCY1</accession>
    <name>A0A0Q8VCY1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L5</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplE</name>
        <name evidence="9" type="ORF">ASE19_06525</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uL5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894488.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55082">
        <property type="protein sequence ID" value="KRC55082"/>
        <property type="gene ID" value="ASE19_06525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1456375at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01333_B">
        <property type="entry name" value="Ribosomal_L5_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002132">
        <property type="entry name" value="Ribosomal_L5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020930">
        <property type="entry name" value="Ribosomal_L5_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031309">
        <property type="entry name" value="Ribosomal_L5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020929">
        <property type="entry name" value="Ribosomal_L5_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022803">
        <property type="entry name" value="Ribosomal_L5_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031310">
        <property type="entry name" value="Ribosomal_L5_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11994">
        <property type="entry name" value="PTHR11994"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00281">
        <property type="entry name" value="Ribosomal_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00673">
        <property type="entry name" value="Ribosomal_L5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002161">
        <property type="entry name" value="Ribosomal_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55282">
        <property type="entry name" value="SSF55282"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00358">
        <property type="entry name" value="RIBOSOMAL_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="5" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L5" evidence="7">
        <location>
            <begin position="33"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L5_C" evidence="8">
        <location>
            <begin position="93"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029522"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC55082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="189" mass="21375" checksum="3EE4A377A9236D4D" modified="2016-01-20" version="1">MTESTIEKVTPRLKTKYREEILPALRTEFEIANVMQVPGVVKVVVNMGVGEAARDSKLIEGAIRDLTAITGQKPAVTKARKSIAQFKLREGMPIGTHVTLRGDRMWEFLDRLLSLALPRIRDFRGLSPKQFDGRGNYTFGLTEQVMFHEIDQDKVDRQRGMDITIVTTATNDEQGRALLKQLGFPFKEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCY5</accession>
    <name>A0A0Q8VCY5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C</fullName>
            <shortName evidence="1">Asp/Glu-ADT subunit C</shortName>
            <ecNumber evidence="1">6.3.5.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">gatC</name>
        <name evidence="3" type="ORF">ASE19_05740</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + L-aspartyl-tRNA(Asn) + L-glutamine = ADP + 2 H(+) + L-asparaginyl-tRNA(Asn) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14513"/>
            <dbReference type="Rhea" id="RHEA-COMP:9674"/>
            <dbReference type="Rhea" id="RHEA-COMP:9677"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78515"/>
            <dbReference type="ChEBI" id="CHEBI:78516"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + L-glutamine + L-glutamyl-tRNA(Gln) = ADP + H(+) + L-glutamate + L-glutaminyl-tRNA(Gln) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17521"/>
            <dbReference type="Rhea" id="RHEA-COMP:9681"/>
            <dbReference type="Rhea" id="RHEA-COMP:9684"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:78521"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterotrimer of A, B and C subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GatC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.-" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894126.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54950">
        <property type="protein sequence ID" value="KRC54950"/>
        <property type="gene ID" value="ASE19_05740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1780195at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050566">
        <property type="term" value="F:asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050567">
        <property type="term" value="F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006450">
        <property type="term" value="P:regulation of translational fidelity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00122">
        <property type="entry name" value="GatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003837">
        <property type="entry name" value="Asp/Glu-ADT_csu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036113">
        <property type="entry name" value="Asp/Glu-ADT_sf_sub_c"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02686">
        <property type="entry name" value="Glu-tRNAGln"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141000">
        <property type="entry name" value="SSF141000"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00135">
        <property type="entry name" value="gatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="76"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="99" mass="10614" checksum="01BC59D842AAFA22" modified="2016-01-20" version="1">MAQISRDEVAHLADLARIDLDDAELDHLAPQLNVILEAVASISGVAGDDVPPTSHPIPLTNVFREDVVVPGLTAEQALSGAPEAEEQRFRVPRILGDEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCZ0</accession>
    <name>A0A0Q8VCZ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Twin-arginine translocation pathway signal protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06220</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894442.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55032">
        <property type="protein sequence ID" value="KRC55032"/>
        <property type="gene ID" value="ASE19_06220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1635706at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027939">
        <property type="entry name" value="NMT1/THI5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015168">
        <property type="entry name" value="SsuA/THI5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31528">
        <property type="entry name" value="PTHR31528"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09084">
        <property type="entry name" value="NMT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359929" evidence="1">
        <location>
            <begin position="38"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="domain" description="NMT1" evidence="2">
        <location>
            <begin position="60"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="371" mass="39156" checksum="49A60E2F3CFB1223" modified="2016-01-20" version="1">MTHPSARSRRRGLRLAAAGLATAVGLLGLAACGSDDAEDGSGTAGADHGTISVQYSWIKNEEFAGEFYADDKGYYDDAGFAGVNGVSGPDTGVAKLLSGTVQVALSDAASIGAAIANEDAPLKIIGATFQKNPFTILSLKDGADITTPEDLKGKKIGVQDSNASVFEAILNANGISKDEVEVVPVDFDPTPLMEGKVDGFMAYLTNEAITVELAGHEVTNLPYADNGVPYVAETFSVTDQYLAENRGLLKDFLVAEIKGWTDVFKNSTEDTVGLITKFYNKAASDNADGLEATFGALDPEKTGKGLEAEKLLISTPDTEANGLFTITDELKAQTVASLKAAGWEVSVDDLFDTSIIDEIYEEQPELKAYLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD94</accession>
    <name>A0A0Q8VD94_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MPAB_Lcp_cat domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06705</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895216.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53785">
        <property type="protein sequence ID" value="KRC53785"/>
        <property type="gene ID" value="ASE19_06705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="624204at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037473">
        <property type="entry name" value="Lcp-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018713">
        <property type="entry name" value="MPAB/Lcp_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37539">
        <property type="entry name" value="PTHR37539"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09995">
        <property type="entry name" value="MPAB_Lcp_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MPAB_Lcp_cat" evidence="1">
        <location>
            <begin position="124"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="431" mass="48608" checksum="DA6DE2CFDD1801BD" modified="2016-01-20" version="1">MTLISTEAVTDVPADLPAGRNLGRTVNYEQAVGKFGRGPVNHLTDHFNIGDELGYRAFAAMKRESLGRDAWMQAINKGIDAVDSAPDELIELFNHVDAVPDWVDWNQLRRGSTAYWRPGKLVIMALAYAAIGAGFRTYGGSRELVLSRRLIDRDQVGRRLIETLRWAANASKPDGMRRNGDGFRMTMEVRYIHAAVRYHCSRDKNWDWNDWGISVDNGSAVYTMGTLFSESVIKALQKVGIKYTAQEIDDIVALWRYIGHVMGIPEDINFTGWSDLRRKSDIIRMVEHPADDGCRTLMKSLSDYMCEETIEGYEVLPPFLDKRLSPDQKRQLTYGLMRGWAGDEICEQLDIPNNRLRVAVPIMRPIVGTYDWINRRRPGYDPERAALDALDEFGVAIQLHDGDTEVAAADDVVARLAANSDRSAAAMRSHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDB4</accession>
    <name>A0A0Q8VDB4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Osmotically inducible protein OsmC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06065</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894067.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55007">
        <property type="protein sequence ID" value="KRC55007"/>
        <property type="gene ID" value="ASE19_06065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1831709at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036102">
        <property type="entry name" value="OsmC/Ohrsf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82784">
        <property type="entry name" value="SSF82784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="131" mass="13765" checksum="3F8686060CF864C4" modified="2016-01-20" version="1">MADPTPFGVRAASGTLREGEGVVLPHAWTEEGVLAGPATNGAQLLHLAVALCVLNDTYREAQRLDVPVAGVRVTTDGGFDDVWTSTGITYDIAVDTTAPAETLGLLLEVVDEVAEIPRVLRAGADVRREGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEY5</accession>
    <name>A0A0Q8VEY5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ferredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_08640</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895547.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54115">
        <property type="protein sequence ID" value="KRC54115"/>
        <property type="gene ID" value="ASE19_08640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1873445at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001080">
        <property type="entry name" value="3Fe4S_ferredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00352">
        <property type="entry name" value="3FE4SFRDOXIN"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="2 4" id="KW-0408">Iron</keyword>
    <keyword evidence="3 4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="2"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU368020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="65" mass="7093" checksum="CDAFA5E23439E853" modified="2016-01-20" version="1">MKCVTVDFDKCTGLGICESLAPDFFEVNDDGELLLLKAEISDTELQEVEEAVNGCPTEALKIVDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFT2</accession>
    <name>A0A0Q8VFT2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897094.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53408">
        <property type="protein sequence ID" value="KRC53408"/>
        <property type="gene ID" value="ASE19_13765"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="409" mass="44534" checksum="6C61C103D3994398" modified="2016-01-20" version="1">MIDRDPGPATDGAWRRTGVMQGDSPHAWRGQVVRAMVEEMPDVVERLRAEGARLGEMPGMPGLVTAMFARRPLVERVLRETAQAEPRVRWRTGHAECLLLEDGRARGAVVDDDPVWADLVVVATGRGSHLGDELRGPVEGGTCGTSYVFATYRTREHAAAYDAPFPSFVTGPDYASLVMPADNRTHHVLLICPSDAEELAVLRTEDGFRRAVAAVPHTAPWSDVDTHEPITRVQVGSNLTNTYRLQGPALGLPPARGLYFLGDSVCTLNPANGRSLALHVPHAKVLLDHVEDDATDLSLLLDQWAEEHIRPWWADHVLTDGSLLRRFHGEPLSVDEPLPSDVILAAGAVRPEWMPVIGPCAGMHAGPAILDQLREPVAQLLRDGWEPPVEGPRRAALVAETRSALATAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG05</accession>
    <name>A0A0Q8VG05_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">30S ribosomal protein S6</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rpsF</name>
        <name evidence="9" type="ORF">ASE19_13835</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 8">Binds together with S18 to 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the bacterial ribosomal protein bS6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897082.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53421">
        <property type="protein sequence ID" value="KRC53421"/>
        <property type="gene ID" value="ASE19_13835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1776954at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00473">
        <property type="entry name" value="bS6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00360">
        <property type="entry name" value="Ribosomal_S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000529">
        <property type="entry name" value="Ribosomal_S6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020815">
        <property type="entry name" value="Ribosomal_S6_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020814">
        <property type="entry name" value="Ribosomal_S6_plastid/chlpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035980">
        <property type="entry name" value="Ribosomal_S6_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014717">
        <property type="entry name" value="Transl_elong_EF1B/ribosomal_S6"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21011">
        <property type="entry name" value="PTHR21011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01250">
        <property type="entry name" value="Ribosomal_S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54995">
        <property type="entry name" value="SSF54995"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00166">
        <property type="entry name" value="S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01048">
        <property type="entry name" value="RIBOSOMAL_S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="6 8 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 8" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="95" mass="10754" checksum="FF50BA8E660CE36B" modified="2016-01-20" version="1">MRNYEVVVILDPSLDERTVQPSLDKYLNVVRNDGGTVDNVDVWGKRRLAYEIKKNAEGIYAIIKLTAAPATVDELDRQLTLNESVLRTKVLRPTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH71</accession>
    <name>A0A0Q8VH71_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02415</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892718.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56700">
        <property type="protein sequence ID" value="KRC56700"/>
        <property type="gene ID" value="ASE19_02415"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011703">
        <property type="entry name" value="ATPase_AAA-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07726">
        <property type="entry name" value="AAA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_3" evidence="1">
        <location>
            <begin position="61"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_lid_2" evidence="2">
        <location>
            <begin position="254"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="337" mass="35363" checksum="6B3FB81C0D46CECD" modified="2016-01-20" version="1">MSPPPGPAAPPAPVAGAAGAAADVDTVARVAGQIRANVEKVIEGKSEVVGAAIVVLLAEGHLLIEDVPGVGKTMLAKALARSIDSTVRRVQFTPDLLPSDITGVSVFNQSTRTFEFRPGGVFANIVIGDEINRASPKTQSALLECMAERQVTVDNVTYQLESPFMVIATQNPVEMEGTYPLPEAQRDRFLARVSIGYPVPAAEIAMLASHGTVNPLDDLEPVTDSAEIRKLCGIVAQVHVSDAVQRYAVSLIAATRNNPELLLGASPRATLHLIRAAKARAALHRRDYVLPDDVRALLQMVLAHRLLPSAEAAVGGRGAAAILDGIAAQVPVPDAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHB8</accession>
    <name>A0A0Q8VHB8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Molybdopterin molybdenumtransferase</fullName>
            <ecNumber evidence="7">2.10.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_06870</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>adenylyl-molybdopterin + H(+) + molybdate = AMP + H2O + Mo-molybdopterin</text>
            <dbReference type="Rhea" id="RHEA:35047"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:36264"/>
            <dbReference type="ChEBI" id="CHEBI:62727"/>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.10.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 7">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 7">Belongs to the MoeA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.10.1.1" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895239.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53808">
        <property type="protein sequence ID" value="KRC53808"/>
        <property type="gene ID" value="ASE19_06870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="651103at2"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061599">
        <property type="term" value="F:molybdopterin molybdotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032324">
        <property type="term" value="P:molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00887">
        <property type="entry name" value="MoeA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008284">
        <property type="entry name" value="MoCF_biosynth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038987">
        <property type="entry name" value="MoeA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036688">
        <property type="entry name" value="MoeA_C_domain_IV_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005110">
        <property type="entry name" value="MoeA_linker/N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036135">
        <property type="entry name" value="MoeA_linker/N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10192">
        <property type="entry name" value="PTHR10192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03453">
        <property type="entry name" value="MoeA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="SSF53218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63867">
        <property type="entry name" value="SSF63867"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63882">
        <property type="entry name" value="SSF63882"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01079">
        <property type="entry name" value="MOCF_BIOSYNTHESIS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 7" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="6 7" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MoCF_biosynth" evidence="8">
        <location>
            <begin position="175"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="387" mass="39813" checksum="44321B6B76873B1A" modified="2016-01-20" version="1">MSDPSVTEHRNRIRTAITPLPPVDVPLARARNRVLAADVTAVLSVPPFDHSAMDGFAVRAEDVVEVPVELPVAGVVAAGDPVTPLKAGTAIRIMTGAEVPPGADLVVPFEWTSGTDPVRVLQTAAAGRHIRRQGEDVAAGDIALTAGTLLGPAQLGLLTSIGRTTVPVRARPRVGIVSTGAELVNGHVPDSNSATLAAAAADLDADVACFGPAPDDPDGFLVQLREAAAASDLVVTTGGVSAGDHDVVKAALRDLPGFWFGPVAMKPGRPQGFGVLDVDGRQVPVLCLPGTPVAAYASFLLYGSGAVAALADPDRIEVRLARLAVPVQAGDRTVLLPGVYDENDHVVPLPGHAGHSQRLLAQAEVLLVVPPHEQEIPAGGAIEVLFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHE9</accession>
    <name>A0A0Q8VHE9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Sugar ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_02555</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892742.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56724">
        <property type="protein sequence ID" value="KRC56724"/>
        <property type="gene ID" value="ASE19_02555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1074175at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="72"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="103"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="132"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="180"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="238"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="68"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="274" mass="29830" checksum="070388BEAEF89136" modified="2016-01-20" version="1">MNRRPGFLVYGLLAAFVLGSALPLYWSFVIGSHTKAEAEQFPPPILPGGHFLENARKVLDTIDFWQSLANSLIVSTACAASVVFFSTLAGYAFAKLRFRGSNVLMGFVVLTMAVPVQLAMVPLFILMRDYQLLDTLAAVALPTLVTAFGVFFMRQYLVDAVPEELIEAARMDGCTMLRTFWTVAVPAARPAMAILFLFTFMQVWTDYMWPLVALDTKNTLQTALDALAVTGQGQTTDYALVLAGTGMATLPLLLLFVLAGRQLVTGIMQGAVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHI4</accession>
    <name>A0A0Q8VHI4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">AAA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_05470</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CbxX/CfxQ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894176.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54905">
        <property type="protein sequence ID" value="KRC54905"/>
        <property type="gene ID" value="ASE19_05470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1115436at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041627">
        <property type="entry name" value="AAA_lid_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000641">
        <property type="entry name" value="CbxX/CfxQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17866">
        <property type="entry name" value="AAA_lid_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00819">
        <property type="entry name" value="CBXCFQXSUPER"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="3">
        <location>
            <begin position="266"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="182"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="479"/>
            <end position="523"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="523" mass="54425" checksum="8F94B9913952CE78" modified="2016-01-20" version="1">MSTLAEALDALVALARDAGLDEAAARAEGEAVAATVSERSRGAFVTWSEQTGRAVSAEEHQLAAKRGNRFRAGPTPLMAQLLLAKSAASAGYAGALADVALAGARLGEPGPEALGAATTVTTAQLGGGAAGLTPPGGGPGAFDLPVRQPVPGLGDEMLDQVRRVGEQVRRQLSAIGGADPSVVEVRGAPAPSLETSEAPRTQAAEPETPAAEPAKDPEPTKTVEELLAELDALVGLANVKGEIHRQAAVLRVEGLRKKAGLESPTITRHLVFNGNPGTGKTTVARLVAGIYRALGLLTKGQLIEVDRSELVAGYLGQTAAKTAEVVASAEGGVLFIDEAYSLSGDQYGKEAIDTLVKEMEDKREDLVVIVAGYPLPMAIFISENPGLESRFRTTIDFSDYTDDELADIFASMVGGADYDAGEPVLARLREILAGTERGPSFGNARFVRNLMEAAIGRHAWRLRDVAEPTLEQLRTLEPADLVVDPNDQPAAPAAAEGEVVPPADAPPAEPVDPFVAAPEEESE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHJ0</accession>
    <name>A0A0Q8VHJ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892696.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56678">
        <property type="protein sequence ID" value="KRC56678"/>
        <property type="gene ID" value="ASE19_02295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2022470at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="187" mass="19318" checksum="C374A2A0596DCCBD" modified="2016-01-20" version="1">MKVDAVVRAIVAPVLLAVALGAAGGWLWWTWWGPAPKGQIYDTTAGPTWYPNPFDPGITRDFSGTAEYVVIGFGLALLVGLVGGMLARNEALVGLGAALVGSVAAAALMTAIGLWQSPSDPQDQAAKVKIDTVLPGNLEVTGWTPYLAWPVGCLLGYLVVMLALNQASVRAGSARPEQPSAAPAPQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHQ0</accession>
    <name>A0A0Q8VHQ0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Response regulatory domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02755</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56758">
        <property type="protein sequence ID" value="KRC56758"/>
        <property type="gene ID" value="ASE19_02755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1950078at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="25"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="16314" checksum="49F9D055C9F23713" modified="2016-01-20" version="1">MRRPPDPARRNPSSIARVSSPKSLKVLVYSDDVHTREQVILALGRRPHPDLPELEYVEVATEPVVIQNMDAGHLALAILDGEAVPAGGMGIAKQLKDEIYDCPPLLVLTGRPQDAWLATWSRADAAVPHPIDPIQLAEAVVSLLRSRVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHY7</accession>
    <name>A0A0Q8VHY7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_04170</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893021.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57004">
        <property type="protein sequence ID" value="KRC57004"/>
        <property type="gene ID" value="ASE19_04170"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1108236at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004638">
        <property type="entry name" value="EmrB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00711">
        <property type="entry name" value="efflux_EmrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360054" evidence="6">
        <location>
            <begin position="34"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="43"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="73"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="97"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="131"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="163"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="195"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="225"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="263"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="298"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="326"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="349"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="464"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="7">
        <location>
            <begin position="7"/>
            <end position="491"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC57004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="508" mass="52659" checksum="A1E667800A37467A" modified="2016-01-20" version="1">MSRKSLILATVCLATLAINISAMVVNVALPTLAEELDASTRDLLWIVDGYNLAFAALVLAMGSLSDKYGRRPALIVGLAGFAASSAAAALVDNSSALIAARVAMGVFAALIFPTTLSIISNTFVDRRERAAAIGLWGAASGVGVALGPVTGGLLLEHFSWNSIFWLMVPIGLATMVLAVAFVPESRDPDVPRIDRPGFVISVAALGLLTWTIIEAPGHGWDSVETLTGFALSAVLVVVFVLVERAVDNPMIDVTLFLDRRFSAASATVTIAFFALFGFVFLITQFFQFVRGYTALETGVRFLPVAFSIAAASIASGQLAHRFGTKALVAPGMLLMGAGFLWISTVPADVSYATVVVPQMVMLGLGLGLVSTPATESILRVLPPSRAGVGSAVNDATRELGGTLGVAIVGSVFASQYADRLVELFGNQVDGATTDKAADSVGFAHALAAQVPALRHAVDVAFLDGFQIACITSGLLCLVGVVVALLALPGAGHDPVVDEDVEESAATLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI93</accession>
    <name>A0A0Q8VI93_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">HTH araC/xylS-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_04050</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892999.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56982">
        <property type="protein sequence ID" value="KRC56982"/>
        <property type="gene ID" value="ASE19_04050"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032687">
        <property type="entry name" value="AraC-type_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12625">
        <property type="entry name" value="Arabinose_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="234"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="337" mass="36738" checksum="D0CBEA292EC6FDBF" modified="2016-01-20" version="1">MTLIRGTSLQGFIELVRELGTDPLPLLAAAHLSPDAIGDHDTFIGYRNVVVVLETAASVTRVGDLGRRLADRQGLEILGPVGVAARTAATVGDALQAVEQFMAVYSPAIAVSVRVPERERLASFSWRLVVDRPPPHRQAAELALGVALRVFRLLAGDDFRPTTLQLQHQPLTDAASYRRWAGCRVDFGVDDYGFRFRPSVLARRLDADSAVHAVVRDYLDTIATGTGSGSGTTDDVVRLVRRMLPTGGLSLELVAEQLAQHPRTLQRHLAAQGITFAELVDGVRRDEAERCLRDTDLPLGQLSGMLGFSEQSVLSRACRRWFGAAPREVRRSSRSTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIG0</accession>
    <name>A0A0Q8VIG0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pilus assembly protein PilB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03940</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57062">
        <property type="protein sequence ID" value="KRC57062"/>
        <property type="gene ID" value="ASE19_03940"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037257">
        <property type="entry name" value="T2SS_E_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007831">
        <property type="entry name" value="T2SS_GspE_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05157">
        <property type="entry name" value="T2SSE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160246">
        <property type="entry name" value="SSF160246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00662">
        <property type="entry name" value="T2SP_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="2">
        <location>
            <begin position="315"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="500" mass="54123" checksum="5556C1D0260F527F" modified="2016-01-20" version="1">MADFRTLTPAPEAIALLTRDQATALQVLPVAIDDEAVTVAVLDPAPERVAAIAAVLERPVRAAVVTARDLERGLATSYRATQEVGGQVQVFEARDALRKEASALDEVSASEDAPVVRVVQSIITQALRDRASDIHVEPTGERVRVRYRIDGALTEVLDLPASIGPGIVSRVKILGGMNIVERRRPQDGQISMEIEGREVDIRVSTTAVVGGEKIVMRVLDKSRPLFKLEQLGMPAETAVRYSQLIHSPFGMVICAGPTGGGKTTTLYASLGELNSPEKNLMTIEDPVEYTFDSINQIQINEQAGITFAGGLKSILRQDPDVILVGEIRDVDTARIAVQSALTGHFVLSSLHATEAVSALYRLLDMGIEAFLIASSVTAVVAQRLVRRSCTSCLEPYQPSPDELAFLQQFGGGEPIGGFQHGTGCHFCAHTGYLERIGVYEMLVITDEVRELIVDRAPHDQMRKLARNQGMRTLQEQAAQLVTHGTTTAAEVMRSIYVAGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIJ6</accession>
    <name>A0A0Q8VIJ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23970</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894015.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57381">
        <property type="protein sequence ID" value="KRC57381"/>
        <property type="gene ID" value="ASE19_23970"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025338">
        <property type="entry name" value="DUF4244"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14029">
        <property type="entry name" value="DUF4244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="63" mass="6640" checksum="8D165A1F9EC92F92" modified="2016-01-20" version="1">MSRPLPSRLRPGSERGVTTAEYAVATAAGAGFAGLLFKLLSGDFGDHLIKTLFDHVLGLLGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIP6</accession>
    <name>A0A0Q8VIP6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pirin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_24100</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the pirin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894040.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57406">
        <property type="protein sequence ID" value="KRC57406"/>
        <property type="gene ID" value="ASE19_24100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="729805at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012093">
        <property type="entry name" value="Pirin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003829">
        <property type="entry name" value="Pirin_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43212">
        <property type="entry name" value="PTHR43212"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02678">
        <property type="entry name" value="Pirin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pirin" evidence="3">
        <location>
            <begin position="19"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="229" mass="23578" checksum="BCBC1E6D76A2E56D" modified="2016-01-20" version="1">MSAEIRRGTDRFTERVAGRLSQHAFSFGPHLDPERISFGPMVCHDDHVLGRGTGFEEHPHAALEIVTWVVSGSVVHRDGAGGSAVLRAGECGVLSAGSGVRHSEVAGDDGPARFVQVWLTPDDPEGSPHYAKASAHAVPGAGWVRVVGPGGPLSVGVAGAALDVARLAAGETLALPSAGRVHAFVATGALLRSSLAEPLSAGDAFALADRPSYDVTAAIPTELLVWTFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKW8</accession>
    <name>A0A0Q8VKW8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">D-3-phosphoglycerate dehydrogenase</fullName>
            <ecNumber evidence="8">1.1.1.95</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_05495</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L-serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>(2R)-3-phosphoglycerate + NAD(+) = 3-phosphooxypyruvate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:12641"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18110"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="EC" id="1.1.1.95"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(R)-2-hydroxyglutarate + NAD(+) = 2-oxoglutarate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:49612"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15801"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.399"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 8">Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 8">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.95" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894172.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54909">
        <property type="protein sequence ID" value="KRC54909"/>
        <property type="gene ID" value="ASE19_05495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1638924at2"/>
    <dbReference type="UniPathway" id="UPA00135">
        <property type="reaction ID" value="UER00196"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004617">
        <property type="term" value="F:phosphoglycerate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006564">
        <property type="term" value="P:L-serine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029009">
        <property type="entry name" value="ASB_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029752">
        <property type="entry name" value="D-isomer_DH_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006236">
        <property type="entry name" value="PGDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045626">
        <property type="entry name" value="PGDH_ASB_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19304">
        <property type="entry name" value="PGDH_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143548">
        <property type="entry name" value="SSF143548"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01327">
        <property type="entry name" value="PGDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00065">
        <property type="entry name" value="D_2_HYDROXYACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0520">NAD</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0718">Serine biosynthesis</keyword>
    <feature type="domain" description="ACT" evidence="9">
        <location>
            <begin position="456"/>
            <end position="529"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00021582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC54909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="529" mass="55196" checksum="952AAFDD7BA23EAF" modified="2016-01-20" version="1">MTDRPVVLIAEELSPATVEALGPDFEIRHCNGADRGELLPAIADVDAILVRSATKVDAEALAAAKRLKVVARAGVGLDNVDVKAATQSGVMVVNAPTSNIVSAAELAVALMLAAARHVSPAHAALRNGEWKRSKYTGIELFEKTVGIVGLGRIGVLVAQRLAAFGMSVIAYDPYVQPGRAAQMGVRLVDLDTLMAESDFMSVHLPKTAETVGLIGAEQLARAKPQLVLVNAARGGIVDEDALYDALKTGRIGGAGLDVFAKEPCTDSPLFELENVVATPHLGASTDEAQEKAGIAVAKSVRLALSGELVPDAVNVQGGVIAEDVRPGIALTEKLGQIFTGVAGEVAQSLDVEVRGEIAEHDVTVLELAALKGVFSGVVEDQVSYVNAPLLAAERGVAVRLVTESESPDHRNLITLRGTLADGSQVSVSGTLVGIHQRERLVEVNGYDIDIEPTDHLALFTYVDRPGMVGTVGQVLGQAQVNIASMQVSRETKGGEALVALSVDSAIPAETLAEIEAAIEATSIRAVDLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLI4</accession>
    <name>A0A0Q8VLI4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06265</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917945.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55041">
        <property type="protein sequence ID" value="KRC55041"/>
        <property type="gene ID" value="ASE19_06265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="951478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017685">
        <property type="entry name" value="ArgP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03298">
        <property type="entry name" value="argP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="3"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="292" mass="31538" checksum="AD14C610D42F6903" modified="2016-01-20" version="1">MRFDPAQLETLVAISEEGTFEAAARRLHVTPSAVSQRIRALERAAGQVLVGRTTPAAVTTAGEPLVRLGRQLRLLAAEAAATLGGEDVVELPVAVNADSLATWLRPVLSAVARTPGVALRLRVEDQAYSDDLLRRGEVLAAITGEPDAVQGCAVVPLGRVRYTPAAAPWLVDAHRRGRSVDWQRLPMVVFNEKDHLQDEVLAARRATRPPVVHRVPSTADFHEAVRAGLGWGMVMDPQLEPDLAAGDLVRLPGARPVDVPLYWQRWRLDSPVLAAFTDAVLTAAAQCLRPLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMX6</accession>
    <name>A0A0Q8VMX6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03980</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892986.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56969">
        <property type="protein sequence ID" value="KRC56969"/>
        <property type="gene ID" value="ASE19_03980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="724641at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="430"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="466"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="496"/>
            <end position="519"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="621" mass="67209" checksum="057A5F1B7ABCEAAF" modified="2016-01-20" version="1">MIATLGVVVLCTALMWMTAVGLLWLAPTTRRAVCMAAIVAAAGAGAALAHLAWPDRAALLPAGTVALTAVVLTMARGERDELSPAGRTAWVAWLLFGASTLVWAVLFVAGLELSTMSTGLLWLAMGVSALTLPSAAVTTREGWEPLLQRRRRSSSLRVVRADVRPRVSIHVPCHAEPPELVISTLERLAALDYDDFEVLVIDNNTTDPALWLPVQEHCRLLGDRFRFFHVEGITGAKAGALNWALPHTDPAAEVIAVVDADYHVEPGWLRDTVGRFADPQLGFVQCPHAYRDHEHSRFATWANWEYAVFFQTGMVSLDNRGAGLTVGTMSLIRKQALVDAGGWAEWCLTEDSELSIRIHAAGYSSVYLTEAYGRGLVPETFEAYRRQRFRWTYGPVQELRHHWRLFLPGWLGGRPSRLTKSQRLHHANHGIDVIGIGVRAVVLVLGIATGFSLIAHGETLQMPFELWFASTAALLGSWLMRLLVYRRCVGATVAQTVGAIVAFAALSLVITVATLRATIGLSSAWHRTSKFQERRNWRSALAGARTETLAGGACAAVALGLFVFAPGSGGVVVMLGIALLAKGLAFLSSPVLALVADRDLPGVVPAPVAVRRDAELLSQVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMZ5</accession>
    <name>A0A0Q8VMZ5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA polymerase IV</fullName>
            <shortName evidence="3">Pol IV</shortName>
            <ecNumber evidence="3">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">dinB</name>
        <name evidence="6" type="ORF">ASE19_22710</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 3">Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="3">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the DNA polymerase type-Y family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892605.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58878">
        <property type="protein sequence ID" value="KRC58878"/>
        <property type="gene ID" value="ASE19_22710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="442163at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd03586">
        <property type="entry name" value="PolY_Pol_IV_kappa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01113">
        <property type="entry name" value="DNApol_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036775">
        <property type="entry name" value="DNA_pol_Y-fam_lit_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017961">
        <property type="entry name" value="DNA_pol_Y-fam_little_finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022880">
        <property type="entry name" value="DNApol_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001126">
        <property type="entry name" value="UmuC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00817">
        <property type="entry name" value="IMS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11799">
        <property type="entry name" value="IMS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100879">
        <property type="entry name" value="SSF100879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50173">
        <property type="entry name" value="UMUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3" id="KW-0234">DNA repair</keyword>
    <keyword evidence="3" id="KW-0235">DNA replication</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0515">Mutator protein</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="UmuC" evidence="5">
        <location>
            <begin position="7"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="358"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="411"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="4">
        <location>
            <begin position="432"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="site" description="Substrate discrimination" evidence="3">
        <location>
            <position position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00025589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC58878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="448" mass="48311" checksum="C8D51C5660C780C4" modified="2016-01-20" version="1">MRAQASILHLDLDAFFAAVEQRDKPSLRGKPVVVGGTGGRGVVSTASYEARVFGVRSAMSTREARARCPHAAYLSGRFEAYRSTSAAVMGVLRSCSPLVEPLSLDEAFVDLAQADLPDLEVATVTAFAEDLRSRVHEVTGGLTASVGLASSKFLAKIASDLRKPDGLVVVEPGTELTLLRPMHVSVIPGVGPATVERLRRAGIHTVAELEQVTEDELVRQLGKSLGHGLFQLARAEDDRPVVPDRETKSVSVEGTYEHDLTDRRQMEAIVVRQAGEVARRMRSSGLSGRTVSLKVRMYDFTTLSRSATLPAPTEDSATIARLARTLLADLDTSGGVRLLGVGVSGLADWVQEDLFAVEEDEDEPEQPDEQPEEAGARPRGTTWAPGMDVVHDEHGRGWVWGSGRGVVTVRFETADTPPGPVRSFPADDPALQRWHPPAPPAEEQPEAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VND2</accession>
    <name>A0A0Q8VND2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895140.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55170">
        <property type="protein sequence ID" value="KRC55170"/>
        <property type="gene ID" value="ASE19_06620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1745181at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002798">
        <property type="entry name" value="SpoIIM-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01944">
        <property type="entry name" value="SpoIIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="166"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="255"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="284"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="331" mass="36091" checksum="C08F8C01A357FCD5" modified="2016-01-20" version="1">MDLDAYVAAHSHSWARLEQLVRQRRRNGAEADELVDRYQQVATHLSVVRTSAPDGQLVAYLSSLLARARISMLAARVPSWRGVVHFFTDRFPAALFQLRWWWLGCVAGNVVVTGVMMAWLAQHPEVEQNLLDPQAVDQLVNSDFESYYSENAASAFATHVWLNNTWVSGLCIALGILGLPVLWLLFQNVLNLAIIGSIMERHDRAEVFWGLILPHGLLELTCVFVAGGVGLRLFWSWIEPGGVSRATALARAGRTAVTVALGLGVVLAISGIIEAFVTPSPLPTWARIGIGIVAEVAFLAYVFVVGRAAASRGQTGDIGAELLEDRVATQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPB1</accession>
    <name>A0A0Q8VPB1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04495</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894338.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54743">
        <property type="protein sequence ID" value="KRC54743"/>
        <property type="gene ID" value="ASE19_04495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2035297at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="48"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="115" mass="12703" checksum="B68325BDFB4E8A25" modified="2016-01-20" version="1">MEVLFWLLPAGIATAVAMLWVGWWGREGRGQVDRETAARRLGEALSREQRTRPGYAVPPRERDRSTGIALRPSKARPVVVPAAVEEPVVEESVVEESVVVKEPASETSARDRRAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPW4</accession>
    <name>A0A0Q8VPW4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00450</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896799.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59541">
        <property type="protein sequence ID" value="KRC59541"/>
        <property type="gene ID" value="ASE19_00450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1526822at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="342" mass="36894" checksum="3BCA088FC5CA1457" modified="2016-01-20" version="1">MSVRLVEVTGSDPVQVEAWAAVTELSLRHEVGDAATAWAHQELLAVLRNPSSKRDEHFWAAYDGERLVGTAWLAVPLLDNLDGATIDVHVHPDLRRRGAGTLLLQQAESVARAAGRTLIDAEVQFAHDDPADGAGTPGREFLSAHGYAFGIANVQRSAPLPMPGEVLDALAAEAAPHHAAYRLESWAGPVPDELVEGWLAVASVLGTEAPTGDMEREPETVDVAAHRDDEALVAAQGRTCWRTAALTADGEVVAYTEIVVPDHDPRFVYQWGTLVRTDHRGHRLGVAVKVANHRALQEGADLGSRRVVTWNAEGNAPMIAINELMGFVPSARMAEMQKRLTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPZ0</accession>
    <name>A0A0Q8VPZ0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Phosphate transport system permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_00205</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896840.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59500">
        <property type="protein sequence ID" value="KRC59500"/>
        <property type="gene ID" value="ASE19_00205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1325025at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011864">
        <property type="entry name" value="Phosphate_PstC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02138">
        <property type="entry name" value="phosphate_pstC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="43"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="84"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="126"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="186"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="248"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="307"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="10">
        <location>
            <begin position="90"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC59500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="341" mass="36068" checksum="80FFE9CB8EE16DE2" modified="2016-01-20" version="1">MTATVLPDYPEAGADDAVARKVPVIHAPTDQVFRHTSRAAGGIVLALMVLIGVFLTVNSVDAISSVGVGKWVTTQEWSPENNSFGIAAVLPGSIVIALVALTVAVPLSIGAALFITEVATGRLRRLMTGMVDLMAAVPSLVYGVWGLAYFQTHVVPFAEFLAKYFGWIPIFDVRGVDPSNALPNPALYTSSFFIAGIIVSLMVIPIQTSIMVESFSRAPQGEKEGAFALGATKWGMIRNVVLPFGKGGMIGAVMLGLGRALGETIAVYLIISPLFEIKFRILENGAVTIAAMIAQRYGEANDFSMSALMSAGLALFILTMFVNFTASSIISRSRSGADSEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ15</accession>
    <name>A0A0Q8VQ15_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">FHA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_00760</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59589">
        <property type="protein sequence ID" value="KRC59589"/>
        <property type="gene ID" value="ASE19_00760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1438033at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FHA" evidence="3">
        <location>
            <begin position="222"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="54"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="81"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="103"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="32673" checksum="95AFCEA58B6C6F3F" modified="2016-01-20" version="1">MVEEIVVAEPDPEPEPEPEPQPDPELEPDPEPEPAPFDEDPVTEVLEEVPDPLSDPIPSAPASPPESPDDWMTPADATGDIADEPADEPADEPADQPADELPTPRDIPLPPPPPGATPVGWIPPPPSAPPVGLPGAPEVDAPPLAIGTWEPVGAAPTTPPPPVAPEPTPFDADHDGQTVSGPGIAAPVLPGIPGQPQAPAVTQPVAKLLVSDGQTIVVDRAVLIGRAPEARRFSSTEQPTLVTVPSRLHEISSTHVEVRPGTGADHGSAVVTDMGSTNGTVLVQPGLGPEDLKPGIAVQLIPGAVINLGDGVTIQVTRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ99</accession>
    <name>A0A0Q8VQ99_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AAA_16 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00885</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59610">
        <property type="protein sequence ID" value="KRC59610"/>
        <property type="gene ID" value="ASE19_00885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1080661at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041664">
        <property type="entry name" value="AAA_16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13191">
        <property type="entry name" value="AAA_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_16" evidence="1">
        <location>
            <begin position="19"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="394" mass="41496" checksum="0590B76BC142EAA6" modified="2016-01-20" version="1">MEAVVPDNPYTPGQVPRILAGRTAEMRRIEDRLARVQSFGELGGPLLVFHAPRGIGKTSLLRAGQRRAIESGFVTAWVACSRQQPVLAEIAHKVGRALEQADAVPAGAAGHRWRGQLERLTVEVGLPGAKVQAELSRRETTAPPYAAIGVLEGLLHDAATAVRERGGAGLLLLLDELHTASADEMSVLLNTLQNLDGERTENPLAAVAAGLPVTPEALTRAATFGERSTFVPLDVLNEADARAVLTAPAEAAGVSWTDGALTAIVTEARGYPYLLQLIGSSTWDAARPAAGDRLGLPDVRRGLPAAREQLTAMHRARWGAATPTEQSFLAAMAAAGTDNVTRAAIAAGMGRDSRSISAPRERLIEKGVIEPVGHGLVRFTLPGFGAFVRSLDGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQB2</accession>
    <name>A0A0Q8VQB2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Molybdenum cofactor sulfurylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06205</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894441.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55031">
        <property type="protein sequence ID" value="KRC55031"/>
        <property type="gene ID" value="ASE19_06205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1879870at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014308">
        <property type="entry name" value="Xanthine_DH_XdhC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003777">
        <property type="entry name" value="XdhC_CoxI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027051">
        <property type="entry name" value="XdhC_Rossmann_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13478">
        <property type="entry name" value="XdhC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02625">
        <property type="entry name" value="XdhC_CoxI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02964">
        <property type="entry name" value="xanthine_xdhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="XdhC_CoxI" evidence="1">
        <location>
            <begin position="11"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="domain" description="XdhC_C" evidence="2">
        <location>
            <begin position="112"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="271" mass="28571" checksum="491B5C9EC695B077" modified="2016-01-20" version="1">MDWLRALLSCREQRVAAVLVTVADVRGHAPRAAGAKLVVSADAVWGSVGGGNLEESAVRRARALIEAGLADAAAVTERHDLSDRAPAEHGVQCCGGEVTLLYEPQPVRPAIAIFGLGHVGLELALLLSRHDLDLHLVDSRADQLAPERLASVLTGPADVHVHREPVLPELAIALLPPGVEALVLTHDHAEDLALLDALLRSDVPASIGLIGSSAKWTRFRARLAELGHDASAVDRVRTPIGDPAVTGKEPARIALAVALELLGRQGAFRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQB3</accession>
    <name>A0A0Q8VQB3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">PBP_domain domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_00195</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896841.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59499">
        <property type="protein sequence ID" value="KRC59499"/>
        <property type="gene ID" value="ASE19_00195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1222928at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024370">
        <property type="entry name" value="PBP_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12849">
        <property type="entry name" value="PBP_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360268" description="PBP_domain domain-containing protein" evidence="3">
        <location>
            <begin position="34"/>
            <end position="592"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="538"/>
            <end position="561"/>
        </location>
    </feature>
    <feature type="domain" description="PBP_domain" evidence="4">
        <location>
            <begin position="39"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="406"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="449"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="560"/>
            <end position="592"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="453"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="575"/>
            <end position="592"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="592" mass="60989" checksum="0A32A9FC029244DF" modified="2016-01-20" version="1">MTDRTPRSRTRRLRVGVVAAALVALSAAAPALAMPRAAAPTAPISGSGSSWAGNAVDDWKAAIKAQSVTVNYNNAGSSQGRKDFANGLADFAVSEIPYTGDTADPKDNVRPDFSYAMLPVVAGGTAFMYNLKVTGQQFKELKLDQLTLAKIFSGQITQWNDPAIKATNPGKAIPQQRITVVVRADGSGATAQFTLWMLRQFPAQYKALCSTTGGCDGKHATSYFPTKNLSNFVAQTGSVGVTTYTSNTEYTINYDEYSYAQNLGFPSAQIKNAAGYFTLPDQYAVAVALTQAKINNNKASDNYLSQDLAAVYPYKDPRSYPLSAYSYMIEPTETRGNFDKAKGTTLAYFEQFVLCEGQQTMGRLGYSPLPMNLVLAALDQVQKVPGIGADTKAKIAATKNGVKTGGANPCNNPTFKPGDSPSNNQLIKSAPFPEGCDAACQAPWINAIGTGGPGKNPTGNGTGTTGGTGTSGPGTTGTGGDGTGAGPGAGPAAGGTSCDPVTGLCTGDQGSGAGTGDPNASANPYNLTRQKTWGTAQLALLISALLVALLVLGPPIAARALDGGTRAPRRVAGTPPVSADPPAPPTASPGAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQL5</accession>
    <name>A0A0Q8VQL5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_01590</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59740">
        <property type="protein sequence ID" value="KRC59740"/>
        <property type="gene ID" value="ASE19_01590"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="2"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="110"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="218"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="373" mass="39701" checksum="0E0479EAE06EF775" modified="2016-01-20" version="1">MRDAVRRITAPFGPGWFQEQVDTGGNGAELWHALGDAGYLGVHLPERHGGGGAGLRELAIVVEETAMAGVPVMTILFSPGVTGTILERSATEEQKQRWLPAIASGRERWSFAITEPEAGCNAHRIATSAARDGDSWVLNGQKHYITGVENASKVVVVARTGTDERTGRGRLSVLVVDADAPGLSFEPIRTVMNQPERSSVVRFDDVRVPAANLVGEEGRGLAVAFTGMNTERILASSICTGLGRYALARAASYARDRQVWGTPIGAHQAVAHPLATAHIRLAAAVEMTDRACRLYDAGSDLGDLANHAKFLGAEAGLEALDAAIAVHGGHGVAVDTHLAGFFWIVRMLNMGPVSKEMILNFVAERALGLPRSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQS2</accession>
    <name>A0A0Q8VQS2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Aldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_01660</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896587.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59752">
        <property type="protein sequence ID" value="KRC59752"/>
        <property type="gene ID" value="ASE19_01660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="293754at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="6">
        <location>
            <begin position="26"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="254"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="526" mass="56708" checksum="812612D6C5E4F0AA" modified="2016-01-20" version="1">MSASPDTSSIPKARKARAAEPTAAAPVEVRNPANDTVVGTVPDMSAGDVAELAARLRAAQPAWEALGPEGRKKHLLAWLDWLVDNKERILGLVHREAGKSWGDAQIELLVAVEVINYYAKNAAKFLADERPSPHNVSAITKKLRLIRRPHQLVGVITPWNYPLAMPMMDVPGALMAGAAVLTKPSEVTPLAWAEAVRGWEEIGAPPVLGIATGLGETGAAVVDQVDMVQFTGSTATGRRIGIRCAERLIPASLELGGKDAMVVLSDADLDRAVQGAVWGGLFNAGQSCIAIERVYVEAPIHDEFVSRLVKAVGELRVGHDAQGAFEADYGAMANENQMAIVERHVADAVAKGATVLTGGERRTDGLFYPPTVLVDVDHTMLAMTEETFGPLLPVMKVEDEGEAVRLANDSPYGLAGSVWTTDPERGLRVGRQVETGGMNINNAMTNVFQFPLPMGGWKSSGLGHRFGGANGIRKYCRQQAFVSEKVHLKSEIHWYPNTSKKAALTDKALRLLGMHDWRRRLGRPAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR10</accession>
    <name>A0A0Q8VR10_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01585</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59739">
        <property type="protein sequence ID" value="KRC59739"/>
        <property type="gene ID" value="ASE19_01585"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="118"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="153"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="179"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="219" mass="23782" checksum="859CAEC41C84B55B" modified="2016-01-20" version="1">MMVMWVGAFMALAGYLPPSDPLDSAQAIATTYDDHAVAIKLGMVVSMAGSALLVPFGVALSGQLKRIDGAKALADTQMVSCALLSLEFITPIGVWMAAAYRSDDRPVDVTRAIHDLGWILFMTVIWSLWVQLVAVGVGALLDRGPTPVLPRWYAYLSLWESFMILPAGLVLFFKDGPFAWNGLFGIWVPLVTFATWILATVLCVHRALDRQIAEGSQPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRR4</accession>
    <name>A0A0Q8VRR4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_02540</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892740.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56722">
        <property type="protein sequence ID" value="KRC56722"/>
        <property type="gene ID" value="ASE19_02540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1200451at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03301">
        <property type="entry name" value="ABC_MalK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015855">
        <property type="entry name" value="ABC_transpr_MalK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040582">
        <property type="entry name" value="OB_MalK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17912">
        <property type="entry name" value="OB_MalK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="4"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="369" mass="39369" checksum="0A1D14A6B8154E30" modified="2016-01-20" version="1">MAEVRFDQATYRYPGAERPAVDALDLTIEDGEFMVLVGPSGCGKSTSLRMLAGLEPVTSGSIRIGEQDVTDVAPKDRDIAMVFQTYALYPHLSVADNMAFALKIAGVPRAERRARVAEAARLLDLEGVLDRKPRALSGGQRQRVAMGRAIVRQPQVFCMDEPLSNLDAKLRVSTRTQIAALQRRLGVTTVYVTHDQVEAMTMGDRVAVMKDGVLQQVDTPLALFDRPANAFVAGFIGSPAMNLLSGRTSGDGVAVVDGVDFVIPRAAAAQASGAVTLGVRPEAWRVVGPQEDGFAVTVQVVEELGADSYLYATPPGVDLAARPAGELVPQIVVRLDQRTGLRRGQEVRLAVDPAAVHVFDGASGLRLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRS7</accession>
    <name>A0A0Q8VRS7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02645</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892756.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56738">
        <property type="protein sequence ID" value="KRC56738"/>
        <property type="gene ID" value="ASE19_02645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2048742at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="112"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="140" mass="14496" checksum="15D5183D87F8A256" modified="2016-01-20" version="1">MNDEPRNPSADQPPVGSVGEEAMKLFGALADLARQQTGEAAGGIGDLAGQAAAMAHDVNEHIATGSAECRYCPVCRVVHAVRQTSPEVRVHLMTAASSLLQAAAGLMETLPAAQTTTPGQPRGPEVEKIDLDDEPDGDTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSJ8</accession>
    <name>A0A0Q8VSJ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SIMIBI class G3E GTPase family. ArgK/MeaB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893076.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57042">
        <property type="protein sequence ID" value="KRC57042"/>
        <property type="gene ID" value="ASE19_03045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1134430at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005129">
        <property type="entry name" value="GTPase_ArgK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00750">
        <property type="entry name" value="lao"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="316" mass="33420" checksum="8DD0A70831B451F0" modified="2016-01-20" version="1">MTAAAVPALVEKAREGDPRSVGRLVSQVEDESPLLPELMRALAPHTGRARIVGITGSPGVGKSTSTNALIGELRRRGHRVAVLAVDPSSPFSGGALLGDRIRMGDHVLDPGVFIRSMAARGHLGGLAWTTPQALRVLDAAGFDYVLVETVGVGQSEVEVAGQADSTMVLLAPGMGDGIQAAKAGILEIGDLYVVNKSDREGADKVRRDLRSMLGLAERREGSWRPPVLKTVASKGEGVADVVDALEEHGTWLRESGELHRRRVRRARNEIETLALTALRRRWGAVGEGDRLDTLAAAVVAGETDAYAAADELTGTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VU19</accession>
    <name>A0A0Q8VU19_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23515</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893936.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57730">
        <property type="protein sequence ID" value="KRC57730"/>
        <property type="gene ID" value="ASE19_23515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1196738at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="55"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="30939" checksum="955C174B527324EA" modified="2016-01-20" version="1">MAGRAALASEQVGQFFVEGARGRDRLEFTEYGAGEAWVVLLPPLLVPRSVHDHAARTLAASGLHVLVLDPLGHGGSDRPADPLSYSVPAFADQVVALLDHVGASRAVVGGSSLGANVALEVAVAAPERVAGLLLDGPVLDNALAAQLAVLAPVMYAARFAPLPLRLVRLASRPLPSRLLPEWVRLARETLDQKPGTVAAVIHGVLFGRLAPSATERSAITARALVLSRPRDPFHPVGDAEQLAGEIAGATLEHAEVPLEWRRRPERLDLVVTRFARECSRGSLRGRRTRSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUW1</accession>
    <name>A0A0Q8VUW1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03795</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892952.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56935">
        <property type="protein sequence ID" value="KRC56935"/>
        <property type="gene ID" value="ASE19_03795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="52"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="405" mass="43511" checksum="26174B7E60185FFE" modified="2016-01-20" version="1">MKRSLSKFWERARSEPGLGRNLVAFAVLVVLGTAVGGYFLAHERFNPPWEDRYTLYVDLHEAAGVSPGNGQEVRIAGVPVGDIRSAEITADGKARLELRIDNGQEVHQDAQVLLRPKSPLNDMYIEISPGTPDAPVLADGDTVPVDRTVSPIQVDDVLAHLDSNTQAAMSSLFAESDVALVNAPKRLPAGLDRTNELLKDLQPVMDKLETRRKNLARLVDALADVSDAAGTNDVRLERMASSLSVTLGTLSGERGNLDATLAQLPELSRQLRETSGSVVELAGQLDPTLADVRKASDELPGALKSFNGSVDELDDFLREAQPVLDRAGPVVGDLRAAAPDLRTVAGDLRPISADARPLTQMLVPRLDDLAAFVYNTNSVVSLRDANRGILRGLFQLSPETIGGLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VV95</accession>
    <name>A0A0Q8VV95_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molybdopterin-guanine dinucleotide biosynthesis protein MobA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00095</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896860.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59481">
        <property type="protein sequence ID" value="KRC59481"/>
        <property type="gene ID" value="ASE19_00095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1432587at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025877">
        <property type="entry name" value="MobA-like_NTP_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12804">
        <property type="entry name" value="NTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NTP_transf_3" evidence="1">
        <location>
            <begin position="5"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="183" mass="18488" checksum="7956CC46E08C99EC" modified="2016-01-20" version="1">MTVTGLLLAAGAGRRMGMPKALVRDDDGPWLSRSAQVLLDGGCPQVVVVLGAGADDAAPLLDGMAGVTAVRSADWAEGMGASLVAGLAAVVTEAALVHLVDLPDVPAAAVARVLASGGDAHDALARASYDGRPGHPVLIGRDHWDGVRAAAIGDRGAREYLATHITALVECGDLATGTDVDRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW03</accession>
    <name>A0A0Q8VW03_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01575</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896602.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59737">
        <property type="protein sequence ID" value="KRC59737"/>
        <property type="gene ID" value="ASE19_01575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1641547at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="14"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="174"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="207"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="242" mass="27279" checksum="C380D4647F9EB672" modified="2016-01-20" version="1">MEPKRGIDSTLMKAAVWSGIVLIVAMVIAQGLLMHFIPAPSPALSAQELADKFIERKNEIRLGALLQCMAWSFWATWTMAITVLIRRTEGAFPILTYCSIALNGGGYVFFILIPMTWAVIAFRPETLDPQIMQIMNDWVWFDFLFTWPPFAVFMIIIGIAIVKDRTAPAIYPRWVAYLNFWCAILIFPAGLIAFFHDGLFAYNGVGAFWMPFFVFFGWMVAMTVVTLQSINRQKAAGLATVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWT0</accession>
    <name>A0A0Q8VWT0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Lactamase_B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23375</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893909.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57703">
        <property type="protein sequence ID" value="KRC57703"/>
        <property type="gene ID" value="ASE19_23375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="775108at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="19"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="258" mass="27569" checksum="A829FDB2CCDD3C34" modified="2016-01-20" version="1">MPFTEVADRVWQLRVPSYDVNLTVVGGERGLVVVDTLATAAEARAAINAIGDLRAGSVVAVVNTHAHFDHVLGNATFRDQYDDPPVHATEDAAAATDPEAPPADHVFSSAAVIDLGDRQLELVHPGRGHTSGDLVVRVPDADVVLIGDLVEESAPPSLGSDSYPLDWPQTLDLVLGLITPGTVVVPGHGAVVDRRFVEQQCDDLRAVAETIRDLATRGVPEDEALAGAEWPFPRDALHHAIPRGYAQLPRARRQLPLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMG5</accession>
    <name>A0A0Q8UMG5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19885</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917999.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46132">
        <property type="protein sequence ID" value="KRC46132"/>
        <property type="gene ID" value="ASE19_19885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1843957at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="348"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="441" mass="47973" checksum="CB9F42C97472C3A2" modified="2016-01-20" version="1">MISDPSTHAPASLLARAEDLVTERRLVEIEALQVLLAWADVFSGDPQAEPGAVPVRRGGPKLVHPGGEGTPGISDLALDEIAIARCEGVGATRRALADALDLRHRLPLIWAGAQKLECETWVVRRVATLSRKLTRDQARIVDVAVAAALGQAPNRILAIAEAKIIEADTTTHQNRIEHNQRHNGVWYSKPKPGDQIAGVDNAAGVATAYARLDEADARVHEAFIEQLAVALAEHGSPEEQDLGMDHWRAEAFAMSADPXXSAAEVVVHVATTDTGDLAPVARVEDLGPRTLTQVQALLARHTNVTITPVIDLHTGRSVNGYEHPIDVKKRSEYRTLGDVFPHATTLFGQSKRSPDHDHTVAYDKDGPPGQTGDHNDTPLTRHAHRAKTHLGYEVHQLGPDRWIWRTPHGLHRLVTSEGTSTIAPAEYSFLRCFRIELALAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMX6</accession>
    <name>A0A0Q8UMX6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20940</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896079.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46308">
        <property type="protein sequence ID" value="KRC46308"/>
        <property type="gene ID" value="ASE19_20940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="520320at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010281">
        <property type="entry name" value="DUF885"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33361">
        <property type="entry name" value="PTHR33361"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05960">
        <property type="entry name" value="DUF885"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="556" mass="61623" checksum="7B4C38E10D9B8DA5" modified="2016-01-20" version="1">MTRLVDARTEQLVEDLAALDPLTATFAGIAGHDGELPDLSPDGFAAREELHRRALADVAALDVTDEREQVAKDAFLERVGLTVERADAGVERSEFSVISSAIHAVREVFDLMPTETPEHWEAIGSRLAAVPQALDGYRTTLLEEAAAGRVSARRQYAEVAGQVRGWTGQEGAAGDYFQRAVSSAPAEVRDQLSRAAQQASAAYAEFGRFIETDLQPRGREVDGVGREAYALNSRYFLGAAVDLEETYAWGWEELKRIEDDMAATAQRIVRGGSVADAVAALDADPARDCGSREAFQEWMQATSDEILRTFDGVHFDIAEPIRTLQCKVAPVNDGGAWYSPPSEDFSRPGTMWFSFTDDHERYSTWRETTTVFHEGVPGHHLQCAQVVHQAELLNRWQRLLCWVSGHGEGWALYAERLMDELGYFEDPGDRLGFLDMQGFRAARVIVDIGVHLGLEVPEDNPFGWRPGEVWDADRVLEFMRAHSRMDDGSLRFEVNRYLGWPGQAPSYKVGERIWLDARADAQARHGSAFDLKAFHTAALDLGSIGLDPLKAALARL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNA0</accession>
    <name>A0A0Q8UNA0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aldehyde dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_21905</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3 7">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896247.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46478">
        <property type="protein sequence ID" value="KRC46478"/>
        <property type="gene ID" value="ASE19_21905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="293754at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006081">
        <property type="term" value="P:cellular aldehyde metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012394">
        <property type="entry name" value="Aldehyde_DH_NAD(P)"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036492">
        <property type="entry name" value="ALDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="8">
        <location>
            <begin position="15"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="active site" evidence="4 5">
        <location>
            <position position="245"/>
        </location>
    </feature>
    <feature type="active site" evidence="4 6">
        <location>
            <position position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR036492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR036492-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="500" mass="52840" checksum="B67F86F04BCF8D14" modified="2016-01-20" version="1">MTSTDAPAASSASAAATFTSLSPATGEVVGTHPIHTAADVQAAVATARKEAERWRALGFDGRKKALVKWRKVIARRMDELAALMARETGKPQGDALLETALAIDHLAWAASHAEKVLKRRSVSPGLLMVNQAASVEYRPLGVVGVIGPWNYPVFTPMGSIAYALAAGNAVVFKPSEYTPGVGEWLAETFREAVGRPVFQVVTGYGETGAALTTAGVDKVAFTGSTATGKRVMAACAQTLTPVVIEAGGKDALLVADDADLDDAAEAALWGAAANAGQTCAGVERVYVHDRVYDEFLGKLVDEARKIKAEPGGQVGPITMPSQVEIIRRHIDDALARGGRALVGGPVPEGARFVQPTVLVDVPEDSAAVQEETFGPTVTVTRVRDMDEAIERANGTRYALGSTVFSKDHGMEIAERLRAGMTAINGVISFAGIPTLPFGGVGDSGFGRIHGPDGLREFTYPHAIARQRFKPAIALTTFRRTAKEEQQLTKVVRGLYGRGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNB8</accession>
    <name>A0A0Q8UNB8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glutamate--cysteine ligase</fullName>
            <ecNumber evidence="1">6.3.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21855</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + L-cysteine + L-glutamate = ADP + gamma-L-glutamyl-L-cysteine + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13285"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58173"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.2"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.2" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46468">
        <property type="protein sequence ID" value="KRC46468"/>
        <property type="gene ID" value="ASE19_21855"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004357">
        <property type="term" value="F:glutamate-cysteine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006750">
        <property type="term" value="P:glutathione biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035434">
        <property type="entry name" value="GCL_bact_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006336">
        <property type="entry name" value="GCS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011556">
        <property type="entry name" value="Glut_cys_lig_pln_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34378">
        <property type="entry name" value="PTHR34378"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34378:SF1">
        <property type="entry name" value="PTHR34378:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04107">
        <property type="entry name" value="GCS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00029283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="406" mass="44471" checksum="A4881E10C2C674ED" modified="2016-01-20" version="1">MFAPTSEDLIGLECEWPVRRVDNPLARPDLHVLQRISDAPLPSAGIVTIEPGGQIELSSAPEDCVEDAIHAVDADATTLHARLRQAGLEPEVTAVDAIRSPRRILERPRYRCMEAHFDRAGAAGRWMMCNTASVQVNISNDPVDPHARWRVLNHISPVLLAMFANSGAIDAGGTTWASSRQGIWWNIDRSRTRPVPMTQDPAHDWLSYAMAAPVFFIQTQGPSSPCGVGVTTGMTFADWFRNGHLLGWPTLDDFRYHLTTLFPPVRPRGWVELRVLDALPPMIRAAAALAVATASAEGVREEILEHIPSTSDLWLVAARDGLNSERLRAAAVRLADILAANVERVADRDSADVLIEFLDTYTRAGLTPGSHRWLPLPITLAGPHAGTMLPMPESPTAVADEILWTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUC9</accession>
    <name>A0A0Q8UUC9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17695</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893164.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48762">
        <property type="protein sequence ID" value="KRC48762"/>
        <property type="gene ID" value="ASE19_17695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="357" mass="37352" checksum="04AD796E34CFC24A" modified="2016-01-20" version="1">MTEKLKNLMDTAADLDFDAVDLAAVMDSGDRVVRRRRIGLVGGVAALAVVVGGIALAAGGSDEAADRAPYTGAPANEVTWAVGTRILTSGSSIEVGHVVHSFVRTGTGFVVADDAGEVWSVARGTVTSIGRVDPRTARLAADVETSVVGWREPDGAGARWVAYDQAAGRRVLSRAIDQPSDDADVVAVDQRSLYVHNRGWDVLDVDGNDVWKVGPPAPGGELMAVEDDVMVWSTGEAYVVERAGDGAVEIGDPAGTTAVLSPDGRRVSFDADELRVHNVATGDEERIDVDGRSFAAGFEWLGNDTLAVIASRDGSMAELLACTVSSGRCREVVADVGTFDELTEGSFALPVGEPVED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUH7</accession>
    <name>A0A0Q8UUH7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18220</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893255.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48854">
        <property type="protein sequence ID" value="KRC48854"/>
        <property type="gene ID" value="ASE19_18220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359430" evidence="2">
        <location>
            <begin position="26"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="110"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="166" mass="16752" checksum="6383E9AEDB662F01" modified="2016-01-20" version="1">MNLSRTWMVRGGAGVALAVISGAWALSIAATGGPSAHGRDDNVAPESSVAPAADPTPEEGEDPLPQDAASTAPTGAVPALETAAGEATDEATDIVVIDPATGEPVVEPSSKPSKPKPPRDTPTSKPTPQPTPTPTQPSPTPTQPRNECTDLVSGLNCILAPITKRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUJ5</accession>
    <name>A0A0Q8UUJ5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyco_tran_28_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18260</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48862">
        <property type="protein sequence ID" value="KRC48862"/>
        <property type="gene ID" value="ASE19_18260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984122at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016758">
        <property type="term" value="F:hexosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007235">
        <property type="entry name" value="Glyco_trans_28_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04101">
        <property type="entry name" value="Glyco_tran_28_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_tran_28_C" evidence="1">
        <location>
            <begin position="61"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="167" mass="18246" checksum="561892A931BB3196" modified="2016-01-20" version="1">MVSAQPPLVAVFLGTDHHRFDRLVHWSAELHLEGRFRFHVQHGATPLPPGLPGRAMLGADGIARLLDAADAVVTHGGPGTIMDARDRGHVPVVVPRDPRLGEHVDDHQLRFARFLGGRGVVTTANDLHQLRARLHLAALVGHAPPQDRPASPAMARFEAMIDELVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUJ7</accession>
    <name>A0A0Q8UUJ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Fatty acid desaturase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_18150</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893243.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48842">
        <property type="protein sequence ID" value="KRC48842"/>
        <property type="gene ID" value="ASE19_18150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1032884at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005804">
        <property type="entry name" value="FA_desaturase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012171">
        <property type="entry name" value="Fatty_acid_desaturase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19353">
        <property type="entry name" value="PTHR19353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00487">
        <property type="entry name" value="FA_desaturase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FA_desaturase" evidence="3">
        <location>
            <begin position="77"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="363"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="10"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="363"/>
            <end position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="406" mass="46551" checksum="02AB477960D368F3" modified="2016-01-20" version="1">MAIADVAQYAHLTEDEVEQIGRELDAIRAEIEESRGASDAAYINRVITTQRWMAALARIGMIVASPLDAKVRRPVLAASAVSLGLAKILENMEIGHNVMHGQWDWMNDPEIHSSTWEWDTGQPAEQWKHSHNYIHHQFTNVLGYDNDIGYGVLRMAREQKWHPVNLGQPVYNALLAGLFQWGVALHDLDLEAIRKGQKDPKEMKRQLRQILRKGRHQIVKDYVLYPALSGRQWRSTMKANASANLMRNLWAYLIIFCGHFPDGALHFTEDELDDESRAEWYLRQVLGTANFEGGRLLHVMSGNLGYQIEHHLFPDLPSNRYAEIAPRVRALCEKYGIPYTTGPLHRQYGQVLRVVMKLSLPNRFTRDDKPPTGVDVTVDHGRRQQEQRQQRRRELGGWSRSDQASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUP1</accession>
    <name>A0A0Q8UUP1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18585</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893319.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48918">
        <property type="protein sequence ID" value="KRC48918"/>
        <property type="gene ID" value="ASE19_18585"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="115" mass="13250" checksum="EDB195DC67B15A69" modified="2016-01-20" version="1">MSNPARDAARTGSTRVRASDRGDEEHLRTWVQERRGVEGFVEPRTAVSEITLLLVAHDGEWTRRRVPSAKWAHDFCNRHLVPSYDAAVVGVPQRMRDYNSRVRKAQKEQLRRDLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUR8</accession>
    <name>A0A0Q8UUR8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aminomethyltransferase</fullName>
            <ecNumber evidence="3">2.1.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Glycine cleavage system T protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_18595</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6S)-5,6,7,8-tetrahydrofolate + (R)-N(6)-(S(8)-aminomethyldihydrolipoyl)-L-lysyl-[protein] = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + (R)-N(6)-dihydrolipoyl-L-lysyl-[protein] + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:16945"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="Rhea" id="RHEA-COMP:10492"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="ChEBI" id="CHEBI:83143"/>
            <dbReference type="EC" id="2.1.2.10"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GcvT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.10" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893321.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48920">
        <property type="protein sequence ID" value="KRC48920"/>
        <property type="gene ID" value="ASE19_18595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="282830at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004047">
        <property type="term" value="F:aminomethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006546">
        <property type="term" value="P:glycine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006223">
        <property type="entry name" value="GCS_T"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028896">
        <property type="entry name" value="GCST/YgfZ/DmdA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43757">
        <property type="entry name" value="PTHR43757"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00528">
        <property type="entry name" value="gcvT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GCV_T" evidence="7">
        <location>
            <begin position="11"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T_C" evidence="8">
        <location>
            <begin position="293"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00031395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC48920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="377" mass="40659" checksum="BA6F5394E23FCB42" modified="2016-01-20" version="1">MADATPLQSPLHDRHEALGAKFSEFGGWLMPLEYPTGVVKEHAAVRDGVGIFDVSHLGKLVVRGPGAVDFLNATLTNDLHRIGPGKAQYSLVVDDATGGIVDDVFTYYRDDEHVLVVPNASNNEEVRRRLVEAAPEGIEILDHHRDYVVLAVQGAKSDEVVAAVGLPVGHEYLTFVETPWEAADADADPDARIIVCRTGYTGERGYELIAPSAVAPALWDALMEKGAEHGLVPAGLGARDTLRTEMGYPLHGQDIGPDITPVEARLGWAVGWKKDAFWGRDKLLAEKEAGPRRKLVGLVSTGRAIPRPHMSVRLLKDVPLGEVTSGTFSPTLKKGIALALVSTVVADDAEVTVDVRGRAEVFQVTKPPFVQPSVRES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUV0</accession>
    <name>A0A0Q8UUV0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">C4-dicarboxylate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_18910</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893373.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48971">
        <property type="protein sequence ID" value="KRC48971"/>
        <property type="gene ID" value="ASE19_18910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="781228at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015293">
        <property type="term" value="F:symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046942">
        <property type="term" value="P:carboxylic acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001991">
        <property type="entry name" value="Na-dicarboxylate_symporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018107">
        <property type="entry name" value="Na-dicarboxylate_symporter_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036458">
        <property type="entry name" value="Na:dicarbo_symporter_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42865">
        <property type="entry name" value="PTHR42865"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00375">
        <property type="entry name" value="SDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118215">
        <property type="entry name" value="SSF118215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00713">
        <property type="entry name" value="NA_DICARBOXYL_SYMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0769">Symport</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="19"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="58"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="86"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="149"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="192"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="227"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="315"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="430"/>
            <end position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC48971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="454" mass="46695" checksum="214CE70F22099B0E" modified="2016-01-20" version="1">MSTTTSATQPKHGSRATHYLYLAVIGAVLLGIATGLLFPDFAVELKPLGEGFVNLIKMMIQPIIFCTIVLGVGSVASAAKVGKVGGLALVYFLAMSTVALTIGMVVGNLLHPGDGLHITADGAAIAQEKAAEGHADTTAFLLGIIPASLFSSLTSGSVLQTLLVALLVGFALQRMGESGAPILTVVGHVQRLVFRLLGMIMWAAPVGAFGAMAAVVGTGGADALKSLAVLMVGFYITCLLFVFVVLGLLLKVTTGINIFALLRYLGREFLLILATSSSESALPRAIAKLEHAGVDRTTVGVVVPTGYSFNLDGTAIYLTMASIFIAEAIGSPLAIGEQISLLLFMMIAAKGAAGVTGSGMAVLAGGLQSHRPELVDGVGLIVGIDRFMSEARALTNFAGNAVGTVLVGHWTGSIDRAQLDRVLAGDDPFDETTMVDDHGSAPAIPAAGKEPQLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUW3</accession>
    <name>A0A0Q8UUW3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Ribosome-recycling factor</fullName>
            <shortName evidence="3">RRF</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Ribosome-releasing factor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">frr</name>
        <name evidence="5" type="ORF">ASE19_19950</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the RRF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895920.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46144">
        <property type="protein sequence ID" value="KRC46144"/>
        <property type="gene ID" value="ASE19_19950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1674344at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006415">
        <property type="term" value="P:translational termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00520">
        <property type="entry name" value="RRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.132.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00040">
        <property type="entry name" value="RRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002661">
        <property type="entry name" value="Ribosome_recyc_fac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023584">
        <property type="entry name" value="Ribosome_recyc_fac_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036191">
        <property type="entry name" value="RRF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20982">
        <property type="entry name" value="PTHR20982"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01765">
        <property type="entry name" value="RRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55194">
        <property type="entry name" value="SSF55194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00496">
        <property type="entry name" value="frr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RRF" evidence="4">
        <location>
            <begin position="21"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="185" mass="20392" checksum="AB29FE6C8178282C" modified="2016-01-20" version="1">MINDILNEADQKMGKSVDATREEFAAIRAGRAHPSMFSKILVDYYGAPTPIQQLASFSAPEPRVIIISPFDAGAKVNIEKAIRDSDLGINPSDDGQVLRCVFPELTEERRKGFIKLAKEKAEGGKVAVRQVRQKAKQGLEKLEKDGEVGKDDVTGAEKRLDGFTKKHTDAIDELLKSKEAELLEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UW47</accession>
    <name>A0A0Q8UW47_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Electron transfer flavoprotein subunit alpha</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_19775</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase).</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Heterodimer of an alpha and a beta subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ETF alpha-subunit/FixB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895889.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46113">
        <property type="protein sequence ID" value="KRC46113"/>
        <property type="gene ID" value="ASE19_19775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1400253at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01715">
        <property type="entry name" value="ETF_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014730">
        <property type="entry name" value="ETF_a/b_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001308">
        <property type="entry name" value="ETF_a/FixB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033947">
        <property type="entry name" value="ETF_alpha_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014731">
        <property type="entry name" value="ETF_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018206">
        <property type="entry name" value="ETF_asu_C_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43153">
        <property type="entry name" value="PTHR43153"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01012">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00766">
        <property type="entry name" value="ETF_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000089">
        <property type="entry name" value="Electra_flavoP_a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00893">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00696">
        <property type="entry name" value="ETF_ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0274">FAD</keyword>
    <keyword evidence="4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ETF" evidence="7">
        <location>
            <begin position="4"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005817"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011355"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="320" mass="32458" checksum="ABBBEFF2FE10AEA9" modified="2016-01-20" version="1">MSEVLVLVDHVDGAVRKPTYELLAIAKRIGSPSAVFIGGADKSAAVADAVKAYGADKVYVVDDAEIKGYLVAPKAEVLQQLAEKASPAAILIPASAEGKEIAGRLAIKLSSGLITDAVDVQVNGDDIVTTQSVFAGNFTVDAKVVKGTPIIAVKPNAAAPEEGAGAGAVEEFAASISDAAKTAQIVASQPRQATGRPELTEAAIVVSGGRGTGGDFTAVEGLADALGAAVGASRAAVDSGWKPHTFQVGQTGKVVSPQLYVANGISGAIQHRAGMQTSKTIVAVNKDEEAPIFELVDFGVVGDLHSVLPAATAEIEKRKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UW69</accession>
    <name>A0A0Q8UW69_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6 9">Malate dehydrogenase</fullName>
            <ecNumber evidence="3 6 9">1.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">mdh</name>
        <name evidence="13" type="ORF">ASE19_22310</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reversible oxidation of malate to oxaloacetate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6 9">
            <text>(S)-malate + NAD(+) = H(+) + NADH + oxaloacetate</text>
            <dbReference type="Rhea" id="RHEA:21432"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15589"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.37"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the LDH/MDH superfamily. MDH type 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.37" evidence="3 6 9"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896312.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46544">
        <property type="protein sequence ID" value="KRC46544"/>
        <property type="gene ID" value="ASE19_22310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="870724at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030060">
        <property type="term" value="F:L-malate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006108">
        <property type="term" value="P:malate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01517">
        <property type="entry name" value="Malate_dehydrog_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001557">
        <property type="entry name" value="L-lactate/malate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022383">
        <property type="entry name" value="Lactate/malate_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001236">
        <property type="entry name" value="Lactate/malate_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015955">
        <property type="entry name" value="Lactate_DH/Glyco_Ohase_4_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001252">
        <property type="entry name" value="Malate_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010945">
        <property type="entry name" value="Malate_DH_type2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23382">
        <property type="entry name" value="PTHR23382"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02866">
        <property type="entry name" value="Ldh_1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00056">
        <property type="entry name" value="Ldh_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000102">
        <property type="entry name" value="Lac_mal_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56327">
        <property type="entry name" value="SSF56327"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01759">
        <property type="entry name" value="MalateDH-SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00068">
        <property type="entry name" value="MDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0520">NAD</keyword>
    <keyword evidence="5 6 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Ldh_1_N" evidence="11">
        <location>
            <begin position="7"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="domain" description="Ldh_1_C" evidence="12">
        <location>
            <begin position="156"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6 7">
        <location>
            <position position="187"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="12"/>
            <end position="18"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 8">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="129"/>
            <end position="131"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 8">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 8">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000102-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000102-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000422"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC46544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="328" mass="33772" checksum="128008981A649057" modified="2016-01-20" version="1">MSATPLKVAVTGAAGQIGYSLLFRIASGAIAGDRPVVLRLLEIEPALKALEGVVMELDDCAFPNLAGVEIGSDPEKIFDGVNLALLVGARPRGPGMERGDLLSANGAIFTAQGKALNAVAADDVRIGVTGNPANTNALIAASNAPDIPKERFSALTRLDHNRAISQLAAKTGSAVTDIKKITIWGNHSATQYPDIFHAEIAGKNAAEVVDDQAWIADTFIPTVAKRGAAIIDARGASSAASAASATCDAARDWLNGTPAGDWVSMAVVSDGSYGVPEGIVSSFPVTTSGGNWEIVQGLEIDDFSRGKIDASVAELVDEKAAVTELGLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXD2</accession>
    <name>A0A0Q8UXD2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21745</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46449">
        <property type="protein sequence ID" value="KRC46449"/>
        <property type="gene ID" value="ASE19_21745"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="177"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="219" mass="22661" checksum="D4B9AC9A98CE1E43" modified="2016-01-20" version="1">MRSNNGNFVVIRDSGVVTVVMNWAGHRGVLGPELAVELAGLLLEIAAETDAKAVVITGVGDVFAAGRDDLLEVELLIDVVRRHPLPMVAAVQRACIGAGLALALACDLRFVAADAILCPTPGAGKRGAARDLLVEEVGTDAAQRLLGLGAVEPRALVEWGVNARIVPTSDVLGFAQEAASAAPERPASPSRGALASRRRGSLRSVWPVPATPSMRGGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXR3</accession>
    <name>A0A0Q8UXR3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15645</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893522.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50053">
        <property type="protein sequence ID" value="KRC50053"/>
        <property type="gene ID" value="ASE19_15645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="850316at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="320" mass="35347" checksum="185610FC0FF3F2D7" modified="2016-01-20" version="1">MGLFGRRRRRERDLSPVTPENPDDSLTFLGVEDAQRIRALVRRSFADRGLEVSVHADHVVDDSGRQFGLWNVAAACHQDDRGRGGWADVVDQHVDRVLAGMDAPDPFEGLTPEAARPRIYARIYERAGIPDLTGFPHREFAPGLVEMIALDMPDSVMVFNDERVEALGGYDQLRAWGMESLRREPVERHEVLDLPDGARFHVLLGGSVHTASRALLMPWLAAEVAGEEVGRHGWLLSVPNRQQVVWHLVRDISVIPTLQAMAGFAAAGFGDSPGPLSPHVYWWDGGAYQQLTQYDDEGNASIVVDATFQAVLEELAGGTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXU2</accession>
    <name>A0A0Q8UXU2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fe-S cluster assembly protein SufB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15940</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0051 (ycf24) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893574.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50107">
        <property type="protein sequence ID" value="KRC50107"/>
        <property type="gene ID" value="ASE19_15940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="635721at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010231">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000825">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037284">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045595">
        <property type="entry name" value="SufBD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01458">
        <property type="entry name" value="SUFBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19295">
        <property type="entry name" value="SufBD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101960">
        <property type="entry name" value="SSF101960"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01980">
        <property type="entry name" value="sufB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SufBD_N" evidence="2">
        <location>
            <begin position="144"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="472" mass="52339" checksum="941049BEC18C8AA8" modified="2016-01-20" version="1">MTSIEELNPELKGIGRYEFGWSDKNDVGANAKRGLNEDVVRDISSKKSEPGWMLDLRLKGLKLFDRKPMPTWGSDLSAIDFDNIKYFVRSSEKQAATWDDLPEDIKNTYDKLGIPEAEKQRLVSGVAAQYESEVVYHSIREDLEAQGVLFLDTDTALREQPELFKEYFGTVIPVGDNKFAALNTAVWSGGSFIYVPKGVHVDIPLQAYFRINTENMGQFERTLIIVDEGAYVHYVEGCTAPIYSSDSLHSAVVEIIVKKGGRCRYTTIQNWSNNVYNLVTKRAVCEAGATMEWVDGNIGSKVTMKYPAVYLMGEHAKGETLSIAFAGEGQHQDAGAKMVHAAPNTSSSILSKSVARGGGRTSYRGLIQVNEGAHGSKSNVLCDALLVDQISRSDTYPYVDIREDDVSMGHEASVSKVSDDQLFYLMSRGMEQDEAMAMIVRGFVEPIAKELPMEYALELNRLIELQMEGAVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY76</accession>
    <name>A0A0Q8UY76_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">AAA ATPase forming ring-shaped complexes</fullName>
            <shortName evidence="2">ARC</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">arc</name>
        <name evidence="6" type="ORF">ASE19_16595</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Homohexamer. Assembles into a hexameric ring structure.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893689.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50220">
        <property type="protein sequence ID" value="KRC50220"/>
        <property type="gene ID" value="ASE19_16595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1115436at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000502">
        <property type="term" value="C:proteasome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019941">
        <property type="term" value="P:modification-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010498">
        <property type="term" value="P:proteasomal protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02112">
        <property type="entry name" value="ARC_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032501">
        <property type="entry name" value="Prot_ATP_ID_OB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041626">
        <property type="entry name" value="Prot_ATP_ID_OB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022482">
        <property type="entry name" value="Proteasome_ATPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16450">
        <property type="entry name" value="Prot_ATP_ID_OB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17758">
        <property type="entry name" value="Prot_ATP_OB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03689">
        <property type="entry name" value="pup_AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0647">Proteasome</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="5">
        <location>
            <begin position="264"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="275"/>
            <end position="280"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="586" mass="65248" checksum="B29804DD18A51FED" modified="2016-01-20" version="1">MTSMGEGTGSHRSPSREELEEQVRFLEDEIHDLRRRTAETPGSNARSLEMRLADAQRSLAAVTAQNERLATTLRDARDQIMKLKEEVDRLAQPPAGFGTFLQRNDDDSVDVFTGGRKLRVTVSPAVDLDTLRRGQEVMLNEALNVVAAFEFEQVGEVVMLKEVLADGERVLVIANADEERVVKLAEPLLTETLRAGDSLLLDSRAGYVYEKVPKSEVEELVLEEVPDITYETIGGLGNQIEMIQDAVELPYLYPDLFTEHELKPPKGILLYGPPGCGKTLIAKAVANSLAKKVAAKTGAEGKSYFLNIKGPELLNKYVGETERHIRLVFQRAREKASQGTPVIVFFDEMDSLFRTRGSGVSSDVENTIVPQLLSEIDGVETLENVLVIGASNREDMIDPAILRPGRLDVKIKIERPDAESARDIFSKYLTTSLPLHPEDVAEFGGDKQATVTGMIRATVERMYTETEENRFLEVTYANGDKEVLYFKDFNSGAMIQNIVDRAKKMAIKDFIDHDQKGLRVSHLLQACVDEFKENEDLPNTTNPDDWARISGKKGERIVFIRTLITGKQGTEPGRSIDTVSDTGQYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY94</accession>
    <name>A0A0Q8UY94_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 20">Methionine synthase</fullName>
            <ecNumber evidence="6 20">2.1.1.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="19 20">5-methyltetrahydrofolate--homocysteine methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="30" type="ORF">ASE19_16650</name>
    </gene>
    <organism evidence="30 31">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="30 31" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="30 31">Root79</strain>
        </source>
    </reference>
    <reference evidence="30 31" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="30 31">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="18 20">Catalyzes the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 20">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + L-homocysteine = (6S)-5,6,7,8-tetrahydrofolate + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:11172"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:58199"/>
            <dbReference type="EC" id="2.1.1.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 20 23">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 20 22">
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4 20">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-methionine from L-homocysteine (MetH route): step 1/1.</text>
    </comment>
    <comment type="domain">
        <text evidence="20">Modular enzyme with four functionally distinct domains. The isolated Hcy-binding domain catalyzes methyl transfer from free methylcobalamin to homocysteine. The Hcy-binding domain in association with the pterin-binding domain catalyzes the methylation of cob(I)alamin by methyltetrahydrofolate and the methylation of homocysteine. The B12-binding domain binds the cofactor. The AdoMet activation domain binds S-adenosyl-L-methionine. Under aerobic conditions cob(I)alamin can be converted to inactive cob(II)alamin. Reductive methylation by S-adenosyl-L-methionine and flavodoxin regenerates methylcobalamin.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the vitamin-B12 dependent methionine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="30">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.13" evidence="6 20"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893699.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50230">
        <property type="protein sequence ID" value="KRC50230"/>
        <property type="gene ID" value="ASE19_16650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="118138at2"/>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00081"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008705">
        <property type="term" value="F:methionine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042558">
        <property type="term" value="P:pteridine-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02069">
        <property type="entry name" value="methionine_synthase_B12_BD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1240.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.196.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003759">
        <property type="entry name" value="Cbl-bd_cap"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003726">
        <property type="entry name" value="HCY_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036589">
        <property type="entry name" value="HCY_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033706">
        <property type="entry name" value="Met_synthase_B12-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011822">
        <property type="entry name" value="MetH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036594">
        <property type="entry name" value="Meth_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000489">
        <property type="entry name" value="Pterin-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004223">
        <property type="entry name" value="VitB12-dep_Met_synth_activ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037010">
        <property type="entry name" value="VitB12-dep_Met_synth_activ_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02607">
        <property type="entry name" value="B12-binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02965">
        <property type="entry name" value="Met_synt_B12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00809">
        <property type="entry name" value="Pterin_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02574">
        <property type="entry name" value="S-methyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000381">
        <property type="entry name" value="MetH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01018">
        <property type="entry name" value="B12-binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47644">
        <property type="entry name" value="SSF47644"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="SSF51717"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56507">
        <property type="entry name" value="SSF56507"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82282">
        <property type="entry name" value="SSF82282"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02082">
        <property type="entry name" value="metH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50974">
        <property type="entry name" value="ADOMET_ACTIVATION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51337">
        <property type="entry name" value="B12_BINDING_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50970">
        <property type="entry name" value="HCY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50972">
        <property type="entry name" value="PTERIN_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 20" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10 20 22" id="KW-0846">Cobalamin</keyword>
    <keyword evidence="17 20 21" id="KW-0170">Cobalt</keyword>
    <keyword evidence="13 20 21" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16 20" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="8 20 24" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="31" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="14" id="KW-0677">Repeat</keyword>
    <keyword evidence="12 20 22" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="11 20 24" id="KW-0808">Transferase</keyword>
    <keyword evidence="15 20 21" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Hcy-binding" evidence="25">
        <location>
            <begin position="13"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="domain" description="Pterin-binding" evidence="26">
        <location>
            <begin position="362"/>
            <end position="627"/>
        </location>
    </feature>
    <feature type="domain" description="B12-binding N-terminal" evidence="29">
        <location>
            <begin position="654"/>
            <end position="752"/>
        </location>
    </feature>
    <feature type="domain" description="B12-binding" evidence="28">
        <location>
            <begin position="757"/>
            <end position="892"/>
        </location>
    </feature>
    <feature type="domain" description="AdoMet activation" evidence="27">
        <location>
            <begin position="907"/>
            <end position="1239"/>
        </location>
    </feature>
    <feature type="region of interest" description="Methylcob(III)alamin binding" evidence="22">
        <location>
            <begin position="767"/>
            <end position="771"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="22">
        <location>
            <begin position="1201"/>
            <end position="1202"/>
        </location>
    </feature>
    <feature type="binding site" evidence="21 23">
        <location>
            <position position="253"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="21 23">
        <location>
            <position position="316"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="21 23">
        <location>
            <position position="317"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="22">
        <location>
            <position position="702"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="21">
        <location>
            <position position="770"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
        <ligandPart>
            <name>Co</name>
            <dbReference type="ChEBI" id="CHEBI:27638"/>
        </ligandPart>
    </feature>
    <feature type="binding site" evidence="22">
        <location>
            <position position="815"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="22">
        <location>
            <position position="819"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="22">
        <location>
            <position position="871"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="22">
        <location>
            <position position="957"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="22">
        <location>
            <position position="1146"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010398"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00025552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00031040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="PIRNR" id="PIRNR000381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="PIRSR" id="PIRSR000381-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="22">
        <source>
            <dbReference type="PIRSR" id="PIRSR000381-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="23">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="24">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="25">
        <source>
            <dbReference type="PROSITE" id="PS50970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="26">
        <source>
            <dbReference type="PROSITE" id="PS50972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="27">
        <source>
            <dbReference type="PROSITE" id="PS50974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="28">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="29">
        <source>
            <dbReference type="PROSITE" id="PS51337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="30">
        <source>
            <dbReference type="EMBL" id="KRC50230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="31">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1240" mass="135929" checksum="8F9B62EB91AF77D2" modified="2016-01-20" version="1">MNAFEPHLRPDCTEALTRALAERILIIDGAMGTAIQRDRPDEAGYRGERFRDWPSDVQGNNELLTLTQPDIITGIHREYLEAGADIIETNTFSANRVSMADYDMADLSYELNYESARLAREACDAFATPEKPRYVAGAIGPTTRTATISPDVNDPGARNITYDQLVAAYLEAANGLVDGGSDILLIETIFDSLNAKAAIFAVETLFEERGRRWPVVISGTITDASGRTLSGQTTEAFWNAMRHVKPVAVGLNCALGAPEMRPYLAEMSRIADTYVSAYPNAGLPNAFGEYDESPERQASYIAEFAEAGLVNIVGGCCGTTPAHIAEIAKAVEGKTRRPVAEVDVATRLSGLEPLNITEDSLFVNIGERTNITGSARFRNLIKAEDYDTALSVALQQVEVGAQVIDINMDEGMIDGVAAMDRFTRLIAAEPDISRVPVMIDSSKWEVIEAGLKNVQGKPIVNSISLKEGEEKFVREARLCRKYGAAVVVMAFDETGQADNLERRKEICGRAYRILTEEVGFPAEDIIFDPNCFALATGIEEHATYGIDFIEACAWIKENLPGVHISGGISNVSFSFRGNNPVREAIHAVFLFHAIKAGLDMGIVNAGALVVYDEIDPELRERIEDVVLNRREDAAERLLEIAERFNTKGEEVDPVAAEWRSLPVRERITHALVKGIDADVEADTEELRAEIAAAGGRPIEVIEGPLMDGMNVVGDLFGAGKMFLPQVVKSARVMKKAVAYLLPFIEAEKQPGDAESTNGTIVMATVKGDVHDIGKNIVGVVLQCNNYTVIDLGVMVPAQKILDAAKEHGADIIGLSGLITPSLDEMVNFAAEMERQGLEIPLLIGGATTSRAHTAVKVSPRRTGPVVWVKDASRSVPVAAALLSDEQRPALLEATEADYASLRERHAQKQERPTITLEKARANRTPIDWEGYVPPVPRQQGVRVFSDYDLSELREYIDWQPFFNAWEMKGKFPDILNNPASGEAARKLYDDAQAMLDQLIKEKWLTANGVIGFFPANAVGDDIEVYADESRTTVVTTLRNLRQQGEHREGIPNRSLGDFVAPKESGLTDYVGGFAVTAGLGSQAKIMEFKADLDDYSAILLEALADRLAEAFAERMHERVRKEFWGYQPDEDLDNDALIGERYVGIRPAPGYPACPEHTEKETLFALLDATAATGIELTESMAMWPGAAVSGWYFSHPQSQYFVVGRLAQDQVADYATRKGWTLKEAERWLGPNLGYNPED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYI0</accession>
    <name>A0A0Q8UYI0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17130</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893784.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50315">
        <property type="protein sequence ID" value="KRC50315"/>
        <property type="gene ID" value="ASE19_17130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2061109at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="63" mass="7017" checksum="41F8CBCF590403C7" modified="2016-01-20" version="1">MGHRTDDERRNAERAAERAHLLPEEVAAGSDDPEAQAEAILDESDERTDDPEGTRRESTQTPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYP8</accession>
    <name>A0A0Q8UYP8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17875</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893195.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48793">
        <property type="protein sequence ID" value="KRC48793"/>
        <property type="gene ID" value="ASE19_17875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2216280at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="99" mass="10853" checksum="2F8DBDDFD494E378" modified="2016-01-20" version="1">MGEDEAYREVSREGGAYPMMSISVAGEDAVVHLFRNPDSCFFLDRDQALDERESRLFPVLGVEVVSSGSFVCTTRRDRAVADAFASGAEPDELGTWTSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYY0</accession>
    <name>A0A0Q8UYY0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18315</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893274.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48873">
        <property type="protein sequence ID" value="KRC48873"/>
        <property type="gene ID" value="ASE19_18315"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="12"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="306" mass="33527" checksum="B0A9AA51BCCC0B58" modified="2016-01-20" version="1">MSGEHADLPDVDVVIATRDRPRLVREAITAVLSQTYAGTIRCIVVFDGTELDHSLEQRGPGRSVEVVANRRRPGLAGARNTGILAGQGELVAFCDDDDLWLPDKLGRQVELLRTGGPATCVTGIEVSYEGERHTRVPTPADLELRHLVRHRVMEAHPSTVVVRRRALLSSIGLVDEAIPGSYGEDFDWMIRAAQAGGFHLVAAPLVRVRWGTSQFSRDWTTIAAAIDYGLAKHPVFHEDRRALARLLGRKAFALAALHRREAFACALSSARASVREPRAYLAAVVALRLVSAERLLDVAHRRGHGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V284</accession>
    <name>A0A0Q8V284_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_15070</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896474.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51407">
        <property type="protein sequence ID" value="KRC51407"/>
        <property type="gene ID" value="ASE19_15070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1108236at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="59"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="90"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="119"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="150"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="178"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="210"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="241"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="278"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="313"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="343"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="368"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="403"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="448"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="24"/>
            <end position="474"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC51407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="493" mass="50801" checksum="424E334B13D4F890" modified="2016-01-20" version="1">MSSTSPATSPATGAIRWSGRTWALLITLCIVLFLDGLDVSMIGVALPSIGDELDLSTSSLQWLISGYVLGYGGLLLVGGRTADLLGRRRVFLVALAVFAAASLLGGLVSSGPLLIATRFIKGLAAAFTAPTGLSIITTNFAEGPARNKALSIYTVFGAGGYSSGLLFGGLMTGVGWRWTFLLPVPVALLALAAAWMLVPRDEPAEEGGHDLLGALTSGAAMLLLVYTVVSAPDAGWSSLRTVFSFVGVAVLFTAFVTIERRIAHPLVRLGILRKATLVRASIAIVAVGGSYFSWQFIVTLFLQDGLGWSPLRLALALLPIGLMVTLSAVFSDKLVDRFGTGPIIAVTMAVMAVGYLLFLLRLDTSPSYLTVLLPPLLLIGAGWIGFPAINIQATSGIHDDEQGLAAGVLQTSMQVGAAIVLAITTAIITSGTADATTPAAALDGFRPGLAFAAAVSALGALVAIGGLVLDRRTRLAGDEVVAGQAEPELAGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2G0</accession>
    <name>A0A0Q8V2G0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">GGDEF domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17825</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48784">
        <property type="protein sequence ID" value="KRC48784"/>
        <property type="gene ID" value="ASE19_17825"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="190"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="213"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="239"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="271"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="2">
        <location>
            <begin position="333"/>
            <end position="467"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="474" mass="50114" checksum="CAB55BAF135B385D" modified="2016-01-20" version="1">MERTVTGAAARAALPALGYATAYALAILVGRATRVEGSEVSLVWPAAAVAVLWGIHARGRSRRAAAAHWVALGTLTLAVSMATGAALDLSVWFVGVNVALAAVTTALLGYDGREIALRDPADLGRLVAALTCGTLVAAILATAFFAHQGHPELPETFALFAVRNGVTALAGVAVVLRLRAAQWRRPELSWARSLEIAGCVAVTTWVFGRVFWFNPGLPIAFAIMLPAIWVSLRFSTTTSTLFLAAAGTSIVWATLLDRGALEGIAPQEQALLAQGMVGCLAVVVLTLSLFRDSRNDLIGRLRHLALHDPLTGLANRTLLMERLEDALARSAPGTVGVILLDLDGFKLVNDAWGHGEGDLLLVEIAQRLQQTVRAGDTVARLGGDEFVVVCTRLRSADELRACADRIRAAVAEPYGDAADAPYDRITASIGAVVSERSCNARSLLSNADHAMYDVKRAIRNGTAPVTALAARSPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V311</accession>
    <name>A0A0Q8V311_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_18840</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48960">
        <property type="protein sequence ID" value="KRC48960"/>
        <property type="gene ID" value="ASE19_18840"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="56"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="87"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="111"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="144"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="182"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="244"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="280"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="309"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="336"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="376"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="402"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="18"/>
            <end position="423"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC48960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="431" mass="42437" checksum="0B75D7329EA082C5" modified="2016-01-20" version="1">MGGAGSPGERAVNAQRRTVRVLVLTQAVGAVGITIGIATASLLARDLSGSETLSGLAQTAQVLGAAVISFLLAPLMARRGRRAGLMTGYLVGAGGGLTAVLAGVVGSMPLLLVGAVMLGAGTAANSAARYAATDLATDETRARSLSLVVWATTIGAVAGPNLTGPAGSFADAVDIPELTGPFALGAIGMLAAALVVALLLRPDPLLLAQSLAAADEEAGLRPPAVVRGGSSWARAVAAIRERPVLGYAIGGLALTHATMVGVMVMTPLHMEHGGSGLEVIGIVISVHVLGMFAFSPVVGLLADRFGRPPVLGAGGATLLVALLLCASAPTGMSWQVTAGLFLLGLGWSLAMVSASTMVAEHAPLEARTDVQGASDLVMGLTAAAAGALAGVIVGIADYPALALASLLLVVGVLGAAARAAAATAATRRATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V430</accession>
    <name>A0A0Q8V430_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Carbamoyl-phosphate synthase large chain</fullName>
            <ecNumber evidence="15">6.3.5.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">Carbamoyl-phosphate synthetase ammonia chain</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15 19" type="primary">carB</name>
        <name evidence="19" type="ORF">ASE19_19310</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19 20">Root79</strain>
        </source>
    </reference>
    <reference evidence="19 20" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19 20">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>2 ATP + H2O + hydrogencarbonate + L-glutamine = 2 ADP + carbamoyl phosphate + 2 H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:18633"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="15">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="15">Binds 4 Mg(2+) or Mn(2+) ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="15">Amino-acid biosynthesis; L-arginine biosynthesis; carbamoyl phosphate from bicarbonate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 15">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15">Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 15">Belongs to the CarB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.5" evidence="15"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893439.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49037">
        <property type="protein sequence ID" value="KRC49037"/>
        <property type="gene ID" value="ASE19_19310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="48855at2"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00171"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004088">
        <property type="term" value="F:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01424">
        <property type="entry name" value="MGS_CPS_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01210_B">
        <property type="entry name" value="CPSase_L_chain_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006275">
        <property type="entry name" value="CarbamoylP_synth_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005480">
        <property type="entry name" value="CarbamoylP_synth_lsu_oligo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036897">
        <property type="entry name" value="CarbamoylP_synth_lsu_oligo_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005483">
        <property type="entry name" value="CbamoylP_synth_lsu_CPSase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011607">
        <property type="entry name" value="MGS-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036914">
        <property type="entry name" value="MGS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033937">
        <property type="entry name" value="MGS_CPS_CarB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02787">
        <property type="entry name" value="CPSase_L_D3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02142">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00098">
        <property type="entry name" value="CPSASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01096">
        <property type="entry name" value="CPSase_L_D3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00851">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48108">
        <property type="entry name" value="SSF48108"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52335">
        <property type="entry name" value="SSF52335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01369">
        <property type="entry name" value="CPSaseII_lrg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00866">
        <property type="entry name" value="CPSASE_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51855">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 15" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5 15" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="11 15 16" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 15 19" id="KW-0436">Ligase</keyword>
    <keyword evidence="12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="14" id="KW-0464">Manganese</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 15 16" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13 15" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 15" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="ATP-grasp" evidence="17">
        <location>
            <begin position="133"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="17">
        <location>
            <begin position="678"/>
            <end position="869"/>
        </location>
    </feature>
    <feature type="domain" description="MGS-like" evidence="18">
        <location>
            <begin position="951"/>
            <end position="1099"/>
        </location>
    </feature>
    <feature type="region of interest" description="Carboxyphosphate synthetic domain" evidence="15">
        <location>
            <begin position="1"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="region of interest" description="Allosteric domain" evidence="15">
        <location>
            <begin position="951"/>
            <end position="1099"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="285"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="299"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="301"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="828"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="840"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="842"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>4</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="KRC49037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1099" mass="116945" checksum="0B4B969E8099990F" modified="2016-01-20" version="1">MPKREDIKSVLVIGSGPIVIGQACEFDYSGTQACRVLKEEGLRVILINSNPATIMTDPEFADATYVEPITPEFVEKVIAKERPDAILPTLGGQTALNAAIAAHESGVLEKYGVEMIGASFEAIHRGENRELFNAIVHKVGGEVARSFVCHSMDDVEKAAGELGFPIVVRPSFTMGGLGSGIAYDEADMHRIAGAGLSASPTTEVLIEESIIGWKEYELEVMRDKADNVVIICSIENFDPMGVHTGDSITVAPAMTLTDREYQHLRDLAIGIIREVGVDTGGCNIQYAVNPADGRVIVIEMNPRVSRSSALASKATGFPIAKIAAKVAVGYTLDEIPNDITQETPASFEPSLDYVVVKVPRFAFEKFPTADTTLTTHMKSVGEAMSIGRNFTEAFNKALRSLENKAAPFHWTGEPGDKDALLEAIKVPHDGRVQKLMQAIRAGATQEEVHDATKIDPWFVDQMFLIDEVAQKVAASESLDAGALRLAKRHGFSDAQIAGIRGLQESEVRIARQTLGVRPVYKTVDTCAAEFAAATPYYYSSYDEETEVLPRAEGKEAVIILGSGPNRIGQGIEFDYSCVHASLALAEAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIYEAEKAAGPIAGVIATLGGQTPLGLAQGLQDAGVPIAGTSPEAIDLAEERGAFGRVLAAAGLVAPKHGTAVSYEDAQKIAHEIGYPVLVRPSYVLGGRGMQIVYSDAALEAYIEAATEISPDRPVLVDRFVDDAVEIDVDALYDGTDLFLGGVMEHIEEAGIHSGDSSCALPPITLGDAEITRIREATTAIAKGVGVRGLINIQFALGADVLYVIEANPRASRTVPFVSKATGTQLAKAAARVMLGETIADLRASGALPAEGDGGTLPADSPIAVKEAVLPFNRFRTKEGNFVDTVLGPEMKSTGEVMGFDADFGTAFSKSQAAAYGSLPTEGKVFISIANRDKRTMIFPARVLADYGFEILATQGTAEVLRRNGIQATVVRKHFEGKGPNGEPTVVDMILGGEIDLIVNTPHGSTGGGDSRIDGYEIRSSAVLTGTPCITTVQGLAAAVQGIAAIRAGSIGVKSLQEWHGRVGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4B7</accession>
    <name>A0A0Q8V4B7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17080</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893776.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50307">
        <property type="protein sequence ID" value="KRC50307"/>
        <property type="gene ID" value="ASE19_17080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1447694at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="339" mass="36623" checksum="AC6FC6DCDBA0F9D0" modified="2016-01-20" version="1">MILREFLYVDVDKVRGLLAQLDDGIVEESTEQTHHEKTTGGGFKGLAEHSQRWGTDATSQKSMGDALFPTLEQSLESLGLLTDISDDAANSDLWGEQMRDRYPPGTLIRITAPAALFDARYVTSILTGFATTWQGLVDLGVMEKAAPPPLRKGQQGGQRSTKRPELIPIADRELEDNVPPVTITYGGSVIEREYMQGIVRVSRGMFSTGLHLNMLPSGSTDAIVTARLQEGQRFLDGDTEVLFARYGVSAQDWTMVGTIGHYGHEPLSDDDAPSLVNDDGSVNRAGFTGFINNFLHTVGGTGLADLPQEPGFSVVPLAVYRLVGDASKTLAVLDGAESP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5L6</accession>
    <name>A0A0Q8V5L6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Flagellar FliJ protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_09270</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
            <orientation evidence="2">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FliJ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52619">
        <property type="protein sequence ID" value="KRC52619"/>
        <property type="gene ID" value="ASE19_09270"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009288">
        <property type="term" value="C:bacterial-type flagellum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012823">
        <property type="entry name" value="Flagell_FliJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02050">
        <property type="entry name" value="FliJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="120"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC52619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="146" mass="15807" checksum="70FFBDBE468510DD" modified="2016-01-20" version="1">MHREDRGLAAVARVRGVRETDSRIGLQHVLAEEAALATRLTGLSATLESAGVDAVSTTSALVAQRTALANVGVLAREARTELASAEVVSAEARTRWGADRARLAAVELLLERRALRRRTEAGRREAREADDLAAQRWSRGRSEDTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5P4</accession>
    <name>A0A0Q8V5P4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Flagellar basal-body rod protein FlgC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_09240</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894552.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52614">
        <property type="protein sequence ID" value="KRC52614"/>
        <property type="gene ID" value="ASE19_09240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1870921at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001444">
        <property type="entry name" value="Flag_bb_rod_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019776">
        <property type="entry name" value="Flagellar_basal_body_rod_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010930">
        <property type="entry name" value="Flg_bb/hook_C_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00460">
        <property type="entry name" value="Flg_bb_rod"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06429">
        <property type="entry name" value="Flg_bbr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00588">
        <property type="entry name" value="FLAGELLA_BB_ROD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0966">Cell projection</keyword>
    <keyword evidence="4" id="KW-0969">Cilium</keyword>
    <keyword evidence="4" id="KW-0282">Flagellum</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_bb_rod" evidence="2">
        <location>
            <begin position="7"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="domain" description="Flg_bbr_C" evidence="3">
        <location>
            <begin position="82"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF06429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="130" mass="13855" checksum="0F884F2B838474CB" modified="2016-01-20" version="1">MGAFDTLRIANTALGAHQVWLDALADNIANVNTVRSTDDEAFRATYVVFGARGDGGVDVDGFAQSAAEGRVVSSPDHPLADEDGYVRLPDTDMSSQMSQLVMAQRGYQASVQVTKTAQDTYTAALQIGNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5X6</accession>
    <name>A0A0Q8V5X6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">DNA-directed RNA polymerase subunit beta'</fullName>
            <shortName evidence="7">RNAP subunit beta'</shortName>
            <ecNumber evidence="7">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">RNA polymerase subunit beta'</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Transcriptase subunit beta'</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpoC</name>
        <name evidence="11" type="ORF">ASE19_09690</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7 8">
            <text>a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="7">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7 8">Belongs to the RNA polymerase beta' chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894632.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52694">
        <property type="protein sequence ID" value="KRC52694"/>
        <property type="gene ID" value="ASE19_09690"/>
    </dbReference>
    <dbReference type="OrthoDB" id="4421at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.132.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.274.100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.860.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01322">
        <property type="entry name" value="RNApol_bact_RpoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045867">
        <property type="entry name" value="DNA-dir_RpoC_beta_prime"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012754">
        <property type="entry name" value="DNA-dir_RpoC_beta_prime_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000722">
        <property type="entry name" value="RNA_pol_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006592">
        <property type="entry name" value="RNA_pol_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007080">
        <property type="entry name" value="RNA_pol_Rpb1_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007066">
        <property type="entry name" value="RNA_pol_Rpb1_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042102">
        <property type="entry name" value="RNA_pol_Rpb1_3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007083">
        <property type="entry name" value="RNA_pol_Rpb1_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007081">
        <property type="entry name" value="RNA_pol_Rpb1_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044893">
        <property type="entry name" value="RNA_pol_Rpb1_clamp_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038120">
        <property type="entry name" value="Rpb1_funnel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19376">
        <property type="entry name" value="PTHR19376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04997">
        <property type="entry name" value="RNA_pol_Rpb1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00623">
        <property type="entry name" value="RNA_pol_Rpb1_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04983">
        <property type="entry name" value="RNA_pol_Rpb1_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05000">
        <property type="entry name" value="RNA_pol_Rpb1_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04998">
        <property type="entry name" value="RNA_pol_Rpb1_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00663">
        <property type="entry name" value="RPOLA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02386">
        <property type="entry name" value="rpoC_TIGR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1 7 8" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 7 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 7 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="RPOLA_N" evidence="10">
        <location>
            <begin position="310"/>
            <end position="589"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="167"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="535"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="537"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="539"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="878"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="956"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="963"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="966"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC52694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1293" mass="143899" checksum="2889C8FD0034B1DD" modified="2016-01-20" version="1">MLDVNFFDQLQIGLATADDIRTWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWECYCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKVIYFAAYMITSVDEDARHRDLSDLEGKIQLQRQSIEKRRDAGLEDRTKKLEEDLAALEAEGAKADQRRKVRDGAERELKQLRDRAQRELDRLDEVWDTFKSLKVQDLMGDEVLYREMKNWFGKYFEGHMGATAIQKRLQDFDLDAEVESLRETIATGKGQRKVRALKRLKVVEAFRKTGNKPVGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVSGPQLKLHQCGLPKQMALELFKPFVMKRLVDLSHAQNIKSAKRMVERHRPVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSAEAQAEARILMLSTNNILKPSDGRPVTMPTQDMIIGLFFLTTERGQATVEAGGETRLRSFSSPSEAIMAYDRGEITLQDRVRIKLTDYAFEGVEAGEPVLLDTTLGRTIFNDSLPADYPYVNEEVGKKRLGAIVNDLAERYPKVVVAASLDALKDNGFHWATRSGVTVSIDDVITPPNKIELLSVYEAQAAKIQKQFERGLVTDEERRQELIEIWTKASQEVGKALRSTFEANPTNPIYVQVHSGASGNFNQINQVGAMRGLVANPKGEIIPRPIKANFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTERGLPKVIGVRGEDGVVVKDDNAETAAYARTAAKDIPHPETGEILAGAGDDLGDVKIAELIEAGIEEVTVRSVLTCDAKTGTCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRVVELFEARTPKGVSPISEAAGRVEIEETDKARKVLVTPDDGSEVIEYVVSRRSALLVADGQHIEVGQMLTKGTPDPKEVLRILGVRRTQQHLVDEVQEVYRSQGVSIHDKHIEIIVRQMLRRITVLESGETNLLPSDLVDRARFETENRRVVSEGGKPASGRPELMGITKASLATESWLSAASFQETTRVLTDAAINGRSDSLRGLKENVIIGKLIPAGTGLERYRNIRVEPTEEARAAAYAVTGYESYDYEFGNASGQAVALDDFDFGSYQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6T5</accession>
    <name>A0A0Q8V6T5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11905</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CdaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895016.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53086">
        <property type="protein sequence ID" value="KRC53086"/>
        <property type="gene ID" value="ASE19_11905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1439158at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041522">
        <property type="entry name" value="CdaR_GGDEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17853">
        <property type="entry name" value="GGDEF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF_2" evidence="4">
        <location>
            <begin position="284"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_30" evidence="3">
        <location>
            <begin position="446"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="512"/>
            <end position="554"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF17853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="554" mass="59434" checksum="8494762A7B2AFCD1" modified="2016-01-20" version="1">MTARSSTCTLAAVLAELGTEAELLGDEAHFSTRAVAGSTIWPGTGRPRPEPDLVIVCPPVQGTDALAALFDTLPLSPSRIVALTTSPAVPSAKLRKMAGEHAVIILPGFEQSDVVLAIARATDSPDETVARRLSALQRSLTLALSETEPIPALLTKLKSLCNATVALVDKRGRTIHASGPLPMSLLMAEITSTEAPSQSVQAEGWYGLADRISDPTQAGEHFGWLIATARRSEFPDGYSSAAIHVATTLVEASLRMTQVTARQERAVRSAVLEEAIALDRRPRAPELAGRLAGFGLSFSDELRAVVCQPAESDRTDRANAAIGERIPLALGREGIPHLISGRDRYAILLVQCTPATFRRLLVAEGDSLPEMNVGIGRSIRQISDVADSFHDAQLAVRSLRRPPPGTNAMCYDDFSFATRLFSDVGLDSMLAWADAFLEPIDRDGPLFESLQVYFEQHQNINAAAELLHVHHNSLRYRLAKTEELLKVSLRDPAAVASVYLALAAVDLGSMQSTTRPRHVAQPTRLPADIEAPGTPAELSGRPSDRSGVVLGLES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6U0</accession>
    <name>A0A0Q8V6U0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">4Fe-4S ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11165</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894888.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52955">
        <property type="protein sequence ID" value="KRC52955"/>
        <property type="gene ID" value="ASE19_11165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="671513at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="37"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="558" mass="59310" checksum="EF12A50EEE05EE18" modified="2016-01-20" version="1">MAYVVTQSCCADASCVVACPVNCIHPAPGEPGFGTTEMVYVDATACVGCGACATACPVGAMVPDAALTTKQLPFIDLNAAYYDAFPHADRTPVALVPQQRRLTRTGPFRVAVIGAGPAGLYTADELLKHPEVEGVDVYDRLRTPYGLVRHGVAPDHASTKLVTRLFEAIERQPRFRYFLGAAVGDELTLADLRRSYHAVVYAVGASADRALDIPGEKLVGSVPATALVGWYNGHPDQQDLEVPLAHERAVVVGNGNVALDVARILTRPTEVLERTDLAPGALDRLRGSEVREVVVLGRRGPAQAAFTVPELIGLAALDDVDVVVDCDPALLTGDDQRSQLLRDLAARPVDPTSAKRRIVLAFAVSPVEVLGEDGRVTGVRVARNRLVTGDDGAVRAETTDDTFVLDAGLVVRSVGHRGLPVADLPFDERTATVPNHQGRVEPGVYVVGWIKRGPVGFIGTNKTCAQETVETILDDLDHGLPEPTGALADAAALVRERLPESTDLGGWQRIDAAEREQGAAAGRPRVKISDASLQRAIAAAPPVARRRGLLRRTVSLTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V767</accession>
    <name>A0A0Q8V767_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Choline dehydrogenase</fullName>
            <ecNumber evidence="5">1.1.99.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11865</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GMC oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.99.1" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917964.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53078">
        <property type="protein sequence ID" value="KRC53078"/>
        <property type="gene ID" value="ASE19_11865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="543793at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008812">
        <property type="term" value="F:choline dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012132">
        <property type="entry name" value="GMC_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11552">
        <property type="entry name" value="PTHR11552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000137">
        <property type="entry name" value="Alcohol_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00624">
        <property type="entry name" value="GMC_OXRED_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="4">
        <location>
            <begin position="260"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000137-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS00624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="553" mass="60814" checksum="C4C18A2BF013647C" modified="2016-01-20" version="1">MKHDNYDYIIVGGGSAGCVLANRLTADGNNRVLVLEAGHRYSRYDFPVRVPAAFLFVMGNRFYDWCYESEPEPGLGNRRIAHYRGKLMGGCSCINGMFFQRANPLVYEGWAQAPGMQGWDHAHTLPYFKKIERFAGTDPTGIYRGRSGPIPVHRHTVENPLFDALFEAAAQAGHEIVDDVNGYRQEGFAPFDSNIENGERYDAARTYIDPIRDRPNLDVVTGALVTRVVFDGTRAIGVELASRRDGRRVVNGAEVILCGGAFNSPQLLQLSGVGNAGELRTLGIDVVHDLPGVGENMQDHLEAFVMYACTQPVSMAGILRKRTYPGTGLKWLTRRTGPAATNHFEAGGFVRSHPDAPMPNQMLTMLPLGVRNDGTPAPTPHSYQINLGPQQPESKGHVKLRTNDPSKAPALTFNYLSTERDRRDWVEGVRITRELLNQPAFAKYNGGELSPGPAAATDKEILDWVARDAETTYHPCGTCKMGTDDDAVVDPETMRVRGVEGLRVVDASVMPTIPNANLYAPVMMIAERAADLILGNEPLAPEHADFYRHVPVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7A0</accession>
    <name>A0A0Q8V7A0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12850</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895706.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53244">
        <property type="protein sequence ID" value="KRC53244"/>
        <property type="gene ID" value="ASE19_12850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2048737at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="93" mass="10261" checksum="75F7D4C2AC14458D" modified="2016-01-20" version="1">MHVFVIPTQRFLACHVCEGLVFAQREIKMTTTGMTFFDLDWLNKSADGAICVRCGYVHTFMGNAHQWVPPEQVKEGDLPADPLAGTTPPGPVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7B2</accession>
    <name>A0A0Q8V7B2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glycerate kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11985</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the glycerate kinase type-1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895203.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53099">
        <property type="protein sequence ID" value="KRC53099"/>
        <property type="gene ID" value="ASE19_11985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1292731at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008887">
        <property type="term" value="F:glycerate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031388">
        <property type="term" value="P:organic acid phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1510.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018193">
        <property type="entry name" value="Glyc_kinase_flavodox-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004381">
        <property type="entry name" value="Glycerate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018197">
        <property type="entry name" value="Glycerate_kinase_RE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036129">
        <property type="entry name" value="Glycerate_kinase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21599">
        <property type="entry name" value="PTHR21599"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02595">
        <property type="entry name" value="Gly_kinase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006078">
        <property type="entry name" value="GlxK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110738">
        <property type="entry name" value="SSF110738"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 5" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR006078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="338" mass="34191" checksum="D2AB85020D299ADF" modified="2016-01-20" version="1">MQRSGASGKHLGGSASPTVLVAPDSFKGTYAAAEVAAHIARGARAAGATAVECPLADGGEGTYDVLRHALSADVVEVETVGPWRDPLRAAYALTREGVAIIELAAASGLGLRRDDDDALASDTFGTGLLVAHAAERGAGHIVIAAGGSATTDGGAGAVAAIAERGGLRGARITVLCDVTTSFEDAAVVFGPQKGADPDQVGLLTARLHEQAGGYPSDPRGVARTGAAGGFSGALWSWYGAELVSGADYVLDMIDFDRLAGDAMAIVVGEGRLDSQTQQGKIISAVLTRVANKPVFAVVGSIDLDLGEFAERFDGIMVASDPTALAEAGARVAERVRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7H1</accession>
    <name>A0A0Q8V7H1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hydroxymethylglutaryl-CoA lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12405</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HMG-CoA lyase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895101.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53174">
        <property type="protein sequence ID" value="KRC53174"/>
        <property type="gene ID" value="ASE19_12405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1111394at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016833">
        <property type="term" value="F:oxo-acid-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043594">
        <property type="entry name" value="HMGL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42738">
        <property type="entry name" value="PTHR42738"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="3">
        <location>
            <begin position="12"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="310" mass="32412" checksum="B557DC7B26934E57" modified="2016-01-20" version="1">MVVPEPGLPTSVTIYEVGPRDGLQNESVAVPTATKAAFVQRLLAAGLPIVEATSFVHPKWVPQLADAAELMTGLTAELGDRARELPVLVPNERGLDRAVELGMRHVAVFASATETFASKNLNRTLASQFEMFVPTVARAREQGMDVRGYVSMCFGDPWEGAVPVEQVVSVGVRLLELGVGQLSLGDTIGVATAGHVRALVAAFREAGVPTDRLALHFHDTYGQALTNVHAGLQAGVTTYDASAGGLGGCPYAKSATGNLATEDLVWFLTGLGIEHGVDLGSVVATSAWMAEQLGRPSPSAVVRALSGSDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7H2</accession>
    <name>A0A0Q8V7H2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetoin dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15190</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896494.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51427">
        <property type="protein sequence ID" value="KRC51427"/>
        <property type="gene ID" value="ASE19_15190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1582456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="278" mass="29355" checksum="167D644FA801B8E2" modified="2016-01-20" version="1">MKNLNNKVVVITGAGSGIGRALAVNLAGKGARLALSDVNEAGLGETVELAIKAGSPDVHTARLDVADKAAFASYATEVAAHFGQVNVVINNAGVALAGDAVDLTYEDMEWIVGINFWGVVYGTKEFLPHLIASGDGHVVNLSSLFGLLAMPGQSAYNATKFAVRGFTEALREEMLIAGHKVGVTSVHPGGIKTAIARSARVSEKEDQAATAKLFDEKLARMTPERAAEIIVRGITKNQARVLVGLDAHALHNFQKFTGSRYEDVIAIVSKRVLPTKVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Q0</accession>
    <name>A0A0Q8V7Q0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sulfurtransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12370</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895094.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53167">
        <property type="protein sequence ID" value="KRC53167"/>
        <property type="gene ID" value="ASE19_12370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2056793at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="14"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="112" mass="12086" checksum="7526F7E677D5EA75" modified="2016-01-20" version="1">MIPTIEIENVPDPLPEGLLVLDVREDDEWAAAHIEGAVHIPLMELPARLGEFVELEAPQTLVVCKAGGRSQRAAAYLAQQGYDVVNLIDGMIGWERAGRAMVSDTGQPAVVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Q4</accession>
    <name>A0A0Q8V7Q4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative_PNPOx domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12910</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895716.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53254">
        <property type="protein sequence ID" value="KRC53254"/>
        <property type="gene ID" value="ASE19_12910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1962522at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011576">
        <property type="entry name" value="Pyridox_Oxase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01243">
        <property type="entry name" value="Putative_PNPOx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative_PNPOx" evidence="1">
        <location>
            <begin position="19"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="309" mass="32259" checksum="B82E88F7D7518775" modified="2016-01-20" version="1">MINGLPLAPALPSGRKRVLTPKMQRTLEKGRLALLAFDPGRGPLVTPVLYGVSAHHLWFLVRGNTAKGRALAARPQVGIVVGDPAQSVVIRGRATLLSPTSLTPSTSLLSVLLDVPWGAASWASRNPSQLVGFVRDAESALRASSPKEFTLVSVRPRAALLVADGEVVQERGEWPAEPRYDGTTPHPSGVPALAGVVPDGLEELPAKATSGVLGVLARKGPLAVPAGWDPASGHVTLPPGVLPPATPGDGGLPACLAFHDAVRARPTDQRGVVLRGHLHPDPGPDGGGWRLATERVTFWDGFRTGTQAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7R6</accession>
    <name>A0A0Q8V7R6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12760</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895690.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53227">
        <property type="protein sequence ID" value="KRC53227"/>
        <property type="gene ID" value="ASE19_12760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2060794at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="173" mass="17757" checksum="9EB0D00D4CB89613" modified="2016-01-20" version="1">MTVETNESPPGGTAASAGRGARLVAAGLVLLAAAAAILCGVQAHRATGDADARTDALAAAQKRVPELLGYDAATLDEDLADARAQTTGDFTSDYGQILEDVVAPQAKARRISTRAEVSAAGVVRGDRDRVVVLLFLTQTTTASQGGTTVTGSRVEVTMLPVGDDWRIAGLRPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7S1</accession>
    <name>A0A0Q8V7S1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Sulfatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13000</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="PTM">
        <text evidence="3">The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the sulfatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895732.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53270">
        <property type="protein sequence ID" value="KRC53270"/>
        <property type="gene ID" value="ASE19_13000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1067869at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024607">
        <property type="entry name" value="Sulfatase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00523">
        <property type="entry name" value="SULFATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00149">
        <property type="entry name" value="SULFATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sulfatase" evidence="4">
        <location>
            <begin position="45"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="modified residue" description="3-oxoalanine (Cys)" evidence="3">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR600917-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="629" mass="68080" checksum="DBBCEB4F6933BD0D" modified="2016-01-20" version="1">MTALTQPTRRTVLQGAGAGCAVALTTQGAPASAGALAQRRPLDRPNVIVVTIDDLGWRELGCYGNTFNETPQIDRLAREGTRFTQAYAAAPLCSPTRAALVTGRYPGRTGITDYLRGEEAASDLHLSTRFRSLPEVLAPRGYTTGHIGKWHLTETYHGRYRSRPGNPYAHGFDEVIASEQRYIGGGDYFHPYFFLPGLPARSPGEYLTDRLAQEATGFIRRHHGRPFFLHVANYAVHSDLRAKPGLLAKYRDKHGAGVDGARPVLAAMLESIDQQVGRIVRTLKDLGIARNTLLLVTSDNGGALRAANRPLRGGKGQLYEGGIRVPLVAWWPGTGAAGRVSAELASTIDVLPTAAGLAGADVPAGVDGIDLTGVIRGTATTDRDTLFWAYPHHIGSSHPHAAVRQGGYKLVRQLRNGRDELFDLVADPAETNDISRRAPDIHERLGGLLAGHLDELDLFAPPPGSADYPRAVSTGGFRRVAGAPLRRSVQTVGSARFALSLATAPLLAAGHRQLRLGVVQDADNHLVLRYSHRRRGLRWELRHRGRLVDAGAEPVRTLDGTVDLSRPGARLAMAVRGSQVTAYADEGSGRWEMLFRFDVGGVLDFGSRAVRSRYRYAATSGRGFRARLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7X2</accession>
    <name>A0A0Q8V7X2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_13030</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895737.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53275">
        <property type="protein sequence ID" value="KRC53275"/>
        <property type="gene ID" value="ASE19_13030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="9"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="126"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="232"/>
            <end position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="383" mass="41407" checksum="8024F9D7521DB9B7" modified="2016-01-20" version="1">MTTFNHGWTEEQLALKQSAIEFTKREVTPYLDQWEKDGELPRELQKKLAHAGLLGVGVPEEVGGDGGTLVDICAAQEGFMAAGWSGGAMASAFTHGIAIPHIIQNGSPELIDAWVRPTLSGDLIGSMAVTEPGTGSDVANISTRAVRDGDHWVINGAKTFITSSVRGDFVTTAVRTGEAGAHGISMIVVPKGTPGFTVSRKLDKMGWLASDTGELSYVDVRVPVGNLVGQENHGFYYIAENFVTERIFLALMGYGHAMRCLDLSVRYCKDRETFGKPLVKNQVVRAKLVEMHRQVAVARSYTLEVAQRYVAGENVIAEACLAKQTAVDTAVWVADQAVQLHGGMGYMRESEVERHYRDVRLLPIGGGATEVLTDLAAKLLGYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Z3</accession>
    <name>A0A0Q8V7Z3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53291">
        <property type="protein sequence ID" value="KRC53291"/>
        <property type="gene ID" value="ASE19_13110"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="110"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="145"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="205"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="280"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="306"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="343"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="375"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="417"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="447"/>
            <end position="464"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="487" mass="49977" checksum="C401A237AB0BB65B" modified="2016-01-20" version="1">MVSAGHRSRSGARGQWRRALRDVRHLLAFRAATVRRRRAAGSALAAIGVVTVLAAVLPAGMRVDADLGRMLAPGLAGVAVGAAAAGGGGRELIGRDAAAVHPISPVSDHLGALVLAPLSAGWLIQAWALLGLVAALSGVRAQGIAVAWVLMATALAQAVGWTAEWLRRRGPGWALGRFVLPVVVGLLAAPVAAVVGRIVRTGGPLSLLATAAALLALAVGLVVLGARAALATSRLVPRDEGRLESRTYALRTTPRSDLAVLRRIDRGSVWRSVPLRRGTWLLALAPGSIALAGGLSWSALVLMPGLVASGCVLLFGVNLWCLDGRGLLWRETLPVPPRTVVAARTWVLAELLLGAGAVTLLLGAVRAGRPTAAELLAVVLALGVVVGQAVSAGLRWSAAHPHAVDLRSARATPAPPLVMVGYSLRLAVATTVTGVLLGGLAEAGRTDLLLVLAAALGAVSAYRISRAGRRWSDPVRRARVVSIVSAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V843</accession>
    <name>A0A0Q8V843_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Peptidyl-prolyl cis-trans isomerase</fullName>
            <shortName evidence="3">PPIase</shortName>
            <ecNumber evidence="3">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13385</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 3">PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the cyclophilin-type PPIase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895801.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53339">
        <property type="protein sequence ID" value="KRC53339"/>
        <property type="gene ID" value="ASE19_13385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1861282at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000413">
        <property type="term" value="P:protein peptidyl-prolyl isomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024936">
        <property type="entry name" value="Cyclophilin-type_PPIase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002130">
        <property type="entry name" value="Cyclophilin-type_PPIase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044666">
        <property type="entry name" value="Cyclophilin_A-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45625">
        <property type="entry name" value="PTHR45625"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00160">
        <property type="entry name" value="Pro_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001467">
        <property type="entry name" value="Peptidylpro_ismrse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00153">
        <property type="entry name" value="CSAPPISMRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="SSF50891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50072">
        <property type="entry name" value="CSA_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="PPIase cyclophilin-type" evidence="4">
        <location>
            <begin position="13"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002388"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU363019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="180" mass="18899" checksum="C8C498E4FD0EB2AA" modified="2016-01-20" version="1">MADQQAVLKTNKGDITVNLFPNHAPLTVKSFVGLATGNPVEVTPDGPYTPDRRGGSAGSGPFYDGGTFHRIIPGFMIQGGCPDGIGTGGPGYQFKDEPHPELTFDKPYLLAMANAGPGTNGSQFFITVGATTWLNFKHTIFGEVADQAGRDVVDAIAAVPTGRNDKPVEPVVIESVEIKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V891</accession>
    <name>A0A0Q8V891_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Acetyltransferase component of pyruvate dehydrogenase complex</fullName>
            <ecNumber evidence="7">2.3.1.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_14670</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>(R)-N(6)-dihydrolipoyl-L-lysyl-[protein] + acetyl-CoA = (R)-N(6)-(S(8)-acetyldihydrolipoyl)-L-lysyl-[protein] + CoA</text>
            <dbReference type="Rhea" id="RHEA:17017"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="Rhea" id="RHEA-COMP:10478"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="ChEBI" id="CHEBI:83111"/>
            <dbReference type="EC" id="2.3.1.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>(R)-lipoate</name>
            <dbReference type="ChEBI" id="CHEBI:83088"/>
        </cofactor>
        <text evidence="7">Binds 1 lipoyl cofactor covalently.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 7">Forms a 24-polypeptide structural core with octahedral symmetry.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the 2-oxoacid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.12" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896936.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53566">
        <property type="protein sequence ID" value="KRC53566"/>
        <property type="gene ID" value="ASE19_14670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1626282at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045254">
        <property type="term" value="C:pyruvate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004742">
        <property type="term" value="F:dihydrolipoyllysine-residue acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003016">
        <property type="entry name" value="2-oxoA_DH_lipoyl-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001078">
        <property type="entry name" value="2-oxoacid_DH_actylTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006256">
        <property type="entry name" value="AcTrfase_Pyrv_DH_cplx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036625">
        <property type="entry name" value="E3-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004167">
        <property type="entry name" value="PSBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43178:SF2">
        <property type="entry name" value="PTHR43178:SF2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00198">
        <property type="entry name" value="2-oxoacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02817">
        <property type="entry name" value="E3_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47005">
        <property type="entry name" value="SSF47005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01348">
        <property type="entry name" value="PDHac_trf_long"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00189">
        <property type="entry name" value="LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51826">
        <property type="entry name" value="PSBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5 7" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="4 7" id="KW-0450">Lipoyl</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="9">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="Peripheral subunit-binding (PSBD)" evidence="10">
        <location>
            <begin position="124"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="81"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="8">
        <location>
            <begin position="87"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU361137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC53566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="420" mass="43731" checksum="D2C58862531E39CB" modified="2016-01-20" version="1">MDIKVPDIGDFSDVPVIEVLVAPGDVVRAEDPLITLETDKATMEVPSPVDGTLVSISVAVGDRVSQGTVIAIAEVAGAEPAGAEAPAAEPTPAPEPEPVVPAAPVATTPVGNEPPASTSDDGLRATPLVRRLARELEVDLAGVSGSGPKGRVTKQDLVGHYEKSLAPAGAAGGATGGAGIPPIPEVDFSKFGPVRTVPLSRIKKLSGPHLHRSWLNVPHVTHADEADITDLDAYRRELDTAAKAEGYRVTLLSFLLKASAAALRKYPELNSSLSGENLVLKDYVNIGVAVDTPDGLVVPVVKDVDRKGIGELSRDLGELSEKARDGKLSASDMQGATFTISSLGGIGGTHFTPIVNAPEVAILGVVRSKTAPVWDGEAFVPRLMLPLCLSYDHRVIDGALAARFTAHLAHLAADVRRLVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8D8</accession>
    <name>A0A0Q8V8D8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10280</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53614">
        <property type="protein sequence ID" value="KRC53614"/>
        <property type="gene ID" value="ASE19_10280"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="229" mass="25313" checksum="6EA2152D1348C043" modified="2016-01-20" version="1">MQALLLDLDDTLVDHRGAADRGLRSWLAGLGLASSPAELEELVERWFVLEARHYERAQRRELTHTEQRRVRIREFLPGWDLADDALADDVFAGFLGCYQAAWRAFHDAAATIERAVRAGLPVGILTNGDQAIQTEKLRRTGLLRSDVPVFASSSLPAAKPDPRSYLTACARLGAEPAHTLMVGDSLRHDVVGARDAGLQARLLDRYGRQRDAQVPTVRGLAELRWVSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8G5</accession>
    <name>A0A0Q8V8G5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13760</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897095.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53407">
        <property type="protein sequence ID" value="KRC53407"/>
        <property type="gene ID" value="ASE19_13760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="930905at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="467"/>
            <end position="532"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="534" mass="57096" checksum="2C5E7E61DB4E1B71" modified="2016-01-20" version="1">MSLEAARRAYDARAWPDARRDYAAGDPAATTGRDLEQWGLAAFLVGELAEAADVRERAHHAYLAEGDTDSASRVAFWLGLTATFRGDQGQARGWWGLMRSVQGEAFATSVWSGYELLTAAMSHLHAGHAAEALQLSEDLVSVATEHQDVDLGVFGGLAHGQALLANGDLAAGLAELDATMVRATARSVTPQAVGIVYCAIVANCKACLDVDRSVEWTRVLDEWCAAQPGLVPFQGACIVHRSEVHQLRGDWARAIAEVDQLIAHPGPNQNTIGEAHYVRAELHRLRGEYDAAETAYREALGHGKDPQPGLALMRLAQGRTDSALLSLRRALEEPGAPQLRTRLWPALLEVALVTGDLDCAAEASARLDEAADASDAGYLRAAAAWARGRLAVRRGDPQVALGALRSALEGFRAAGSPYDSARCRVVIAAACEALGDQETARLERDAARVTFVALGAQPDLDLLDHVTPTERHGLTSRETEVLRLVASGATNRGIAEQLVLSEKTVARHVANIFAKLEVSNRSAATAWAHQHGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8Q4</accession>
    <name>A0A0Q8V8Q4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09115</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895144.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53592">
        <property type="protein sequence ID" value="KRC53592"/>
        <property type="gene ID" value="ASE19_09115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1412344at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="115" mass="12060" checksum="3386300168561ED0" modified="2016-01-20" version="1">MCRGCCCGTRRKHPDVDHDAIALALGEELGEDAELLAVDCLWACDLSNVVVVNPSPAARTGGARPAWVTEVNTVDRARVVAHWVRAGGPGVAPVPADLGEVHTAAGLRRISNAAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8Q5</accession>
    <name>A0A0Q8V8Q5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12610</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53658">
        <property type="protein sequence ID" value="KRC53658"/>
        <property type="gene ID" value="ASE19_12610"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017517">
        <property type="entry name" value="CHP03083_actinobac"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03083">
        <property type="entry name" value="TIGR03083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="202" mass="21723" checksum="0EFF4129C08FC212" modified="2016-01-20" version="1">MRQMTAHVVGMAEMAAGIREGARQRKIAGRDAAAKGIAFIDALTDVQVRERADHDPARLTTDVRAVGPRAARGRRMTPSFIRRRDMGVAQVVQGVEESWALGFLLDVILTRDTWMHRSDVAEATGTTMTLTPEHDGAIVADVVAEWAGRHGRPYRLNLTGPAGGEWGAGSGGEEIEMDAVQFCRVLSGRGSGSGLLSTEVPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8Y1</accession>
    <name>A0A0Q8V8Y1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14680</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896935.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53567">
        <property type="protein sequence ID" value="KRC53567"/>
        <property type="gene ID" value="ASE19_14680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="990666at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="298" mass="32797" checksum="A631A83F395B01F6" modified="2016-01-20" version="1">MDLDTIRAFLAVADGHTVTETAERAHRTQPAVSRALARLEREIGTPLLQRVGRGLVLTPAGHELVRHARDTLEAYERGVRSVQDVTAPDGGFVPLAFLHTLGTWLVPELIRDFRTERPHVRFDLRQHGDAGLVEDLLTGVVDLAVTGDRPRLAPLESRRLFLEPLRLVVPPDHRLAARRTARLADVAHEQFIVLKPGFSLRAVTEELCGQVGFVPRIGFEGEEVETLRGLVSAGLGVALLPEPRGSAAPLAPSLKVTDVRASREIGLAWVKDRQLPPASAHFRDHTLRTSRKIHVTDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8Y8</accession>
    <name>A0A0Q8V8Y8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Mechanosensitive ion channel protein MscL</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_06900</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895244.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53813">
        <property type="protein sequence ID" value="KRC53813"/>
        <property type="gene ID" value="ASE19_06900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1863650at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008381">
        <property type="term" value="F:mechanosensitive ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001185">
        <property type="entry name" value="MS_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037673">
        <property type="entry name" value="MSC/AndL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036019">
        <property type="entry name" value="MscL_channel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30266">
        <property type="entry name" value="PTHR30266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01741">
        <property type="entry name" value="MscL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01264">
        <property type="entry name" value="MECHCHANNEL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81330">
        <property type="entry name" value="SSF81330"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0407">Ion channel</keyword>
    <keyword evidence="6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="67"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="124" mass="13458" checksum="9E0D03E6EC0B04BF" modified="2016-01-20" version="1">MDGFKKFILKGNLVDLAVAFIIGTAFAAVVKTFTDVLMGFVSRVFGGSPNFDNVTIWKDEAGVGIPIGTFITAVISFLILAAILYFLVVLPYTKAKERFFPDAPEAPAPEVELLTQIRDSLAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V971</accession>
    <name>A0A0Q8V971_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895204.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53647">
        <property type="protein sequence ID" value="KRC53647"/>
        <property type="gene ID" value="ASE19_12045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1367386at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="1">
        <location>
            <begin position="16"/>
            <end position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="302" mass="32465" checksum="91625DCBA95ABEC1" modified="2016-01-20" version="1">MRIRELDDDAMRGWYAAARDVGIDFFDHAAVYGSRPHECETRFGDALHLTASQREEITLQTKCGTVAEGPYLDFSYDHIVSSVEGSLRALRTDYLDILLLHRPDALVEPDEVARAFDDLAAAGKVLAFGVSNHTPRQMDLLATAVDQPIVANQLQLSLGHAPAVAQGFAMNIEGSEQALVADGGGVLDYCRTKGIAVQAWAPFQAGRSRGVFLGSSDFPVLNAAIDELAHIHEVPPAAIAAAWILRHPAAAQVLLGSTNPARIAEAARCAEVTLARPEWYGLLHAAGYRARPGPPPSSARSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9E2</accession>
    <name>A0A0Q8V9E2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07315</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895316.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53884">
        <property type="protein sequence ID" value="KRC53884"/>
        <property type="gene ID" value="ASE19_07315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1863093at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="184"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="219" mass="22214" checksum="0E311459BCF2897B" modified="2016-01-20" version="1">MRPAAHPFGDPQTVEIARDGSDPAVVHVTWKVGAADDLTLLGIELGVLPQDRVMLDGAVSYDAEDAALVSRAPELSAYLLDHVAVEASGTACTGVVTVVGDLVADGADLAFTCPAAPASAQVEVTTLTDLHPAYRTLATGPSGQHQVYGVDDATHDWSLGPVTAGARTTADATTEASLGTGASAALQIGGVLGAVLLVAGIGSLVVRARRRRVPSVPHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Q5</accession>
    <name>A0A0Q8V9Q5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_07840</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895409.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53978">
        <property type="protein sequence ID" value="KRC53978"/>
        <property type="gene ID" value="ASE19_07840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1992113at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="7">
        <location>
            <begin position="14"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4" evidence="8">
        <location>
            <begin position="113"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="163"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="188" mass="21059" checksum="0933104CA7AA391D" modified="2016-01-20" version="1">MRDISVREDHFRLLYDAHFDAVLGFALRRTDRPEDAADVTAETFLVAWRRLAHVPDGEAARPWLYGVARRTLANQRRGDGRRAALGDRLRQQLAHAVADLADEVAHRADVSAAMQRLSARDEEVLQLHLWEGLEAREIGEVLGLPGTVVRPRLSRARARLRELLGNDPPPAGHLPGEPVPTSPKEELR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAB2</accession>
    <name>A0A0Q8VAB2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_08970</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895604.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54172">
        <property type="protein sequence ID" value="KRC54172"/>
        <property type="gene ID" value="ASE19_08970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1058434at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030296">
        <property type="entry name" value="MlaF/Mkl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43023:SF6">
        <property type="entry name" value="PTHR43023:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="26"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="58"/>
            <end position="65"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="272" mass="29897" checksum="A480C2BE8E85355C" modified="2016-01-20" version="1">MTSLAEPTRALGADGTVAADGTPHTMEVRGVHKTFGSFKVLQGLDLNFQDNAITTVLGPSGTGKSVLIKHLVGLLEPDEGDVVIFGNNLWSMTEHERYEIRKSMGVLFQDGALFGSMNIFDNTAFPLRKHTDKSEDEIREIVLARLTEVGLDRSLHKYPNEVSGGMRKRAGFARAMVMEPKIVFFDEPDSGLDPVRTSLLNDVILDMHAQHGGTYLLVTHDIRTARKVSDYVGLIWKGQTVHYGPAAEAFEHDDPFVRQFLSGDSAGPLGMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAE5</accession>
    <name>A0A0Q8VAE5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10545</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52841">
        <property type="protein sequence ID" value="KRC52841"/>
        <property type="gene ID" value="ASE19_10545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1484659at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046198">
        <property type="entry name" value="DUF6230"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19741">
        <property type="entry name" value="DUF6230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="262" mass="26674" checksum="F225ED45ECBAD52A" modified="2016-01-20" version="1">MVGALAAGLGALTGLATLTWHQALGFDTTLVIQDGNATFSSSQITADDAAFGMAPVRLGNGTWKNLLRAGFATASLNGLCVSKTETVLGGIKYTVKLTAGDGGTGLETRAANAALDVTALRGAGINLQGSTQIGQATTDLTTAPGAAPYLANPFGVPSTYDGGWFGPGTTGPQVYGATGNGGHVNGQGYTGIDATRGSLTNVYGQLWQAQVTGNITLPNLSIKVLPFKDTIGFNANGTPNSTPDGIDDRSCWTEARQGTYPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBX1</accession>
    <name>A0A0Q8VBX1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA ligase (ATP)</fullName>
            <ecNumber evidence="1">6.5.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04625</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.5.1.1" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894316.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54766">
        <property type="protein sequence ID" value="KRC54766"/>
        <property type="gene ID" value="ASE19_04625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1073940at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003910">
        <property type="term" value="F:DNA ligase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012309">
        <property type="entry name" value="DNA_ligase_ATP-dep_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012310">
        <property type="entry name" value="DNA_ligase_ATP-dep_cent"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014146">
        <property type="entry name" value="LigD_ligase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04679">
        <property type="entry name" value="DNA_ligase_A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01068">
        <property type="entry name" value="DNA_ligase_A_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02779">
        <property type="entry name" value="NHEJ_ligase_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50160">
        <property type="entry name" value="DNA_LIGASE_A3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_LIGASE_A3" evidence="3">
        <location>
            <begin position="109"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="312" mass="34350" checksum="038672BE9045396F" modified="2016-01-20" version="1">MDAVPDLLPMLATHGTHVPPGDDWRHEVKWDGVRALTRIAAGTVTMTSRNANRITAAWPDLSTPPDVGDDTVVDGEIIALNERGVPDFRVLADRMHVRKTATVARLAARVPATYMVFDLLRLDGEDLCGLPLHERRRRLGELVLGRSGWQVPAEYDDGAMLLEATRAQGLEGIVSKRVDSTYRPGQRTPHWLKFPHRHRGSFVIGGWRPQTGTRDRLAALLVGEPTPDGLMYRGRVGSGIGPKQSRSLTELLAGLTTAASPFADEVPRVDAEGTTWVEPVVVVDIDTHGLGYERLRQPSYQGVRTDLTPEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBY8</accession>
    <name>A0A0Q8VBY8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Succinyl-diaminopimelate desuccinylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04730</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894299.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54782">
        <property type="protein sequence ID" value="KRC54782"/>
        <property type="gene ID" value="ASE19_04730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="906744at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009014">
        <property type="term" value="F:succinyl-diaminopimelate desuccinylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010174">
        <property type="entry name" value="Succinyl-DAP_deSuclase_DapE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01900">
        <property type="entry name" value="dapE-gram_pos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="1">
        <location>
            <begin position="169"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="364" mass="39017" checksum="B84C540AE680247E" modified="2016-01-20" version="1">MPAIDLHADVVTLTRQLVDIESVSRDEQEIADAVEAALQALPHLTLTRRGHTIVARTDLGRPSRVVIAGHLDTVPVNDNMPSRLDEAAGILHGLGTCDMKGGDAVILKLAATVTEPVHDVTYVLYEAEEIDSAYNGLRLLGESDPELLQADFAILMEPSNAGVEAGCQGTLRVDVRTTGERAHSARSWRGVNAIHGAAEVLARLNGYVARKPVIDGLEYHEGLNAVGIRGGVAGNVIPDECVVTVNFRFAPDRSEADALAFVEEFFDGFAITLTDSAPGALPGLERPAAQAFIDAVGGDVNPKFGWTDVARFTVLGVPAVNYGPGDPMLAHKQDEHVETAQIERCEQQLRAWLLGQSDDTEEHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBZ9</accession>
    <name>A0A0Q8VBZ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12490</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895114.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53187">
        <property type="protein sequence ID" value="KRC53187"/>
        <property type="gene ID" value="ASE19_12490"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="97" mass="11001" checksum="66EE4962BA41B124" modified="2016-01-20" version="1">MPPVTPEQTPAPTPPEQTTAQWVLAAAHPRFLLELAAGYPVVLKQFVQLCLLLTYPGWLFFLAMYLPVWVVGKILYGVLWVLFWPLRASQKRDEPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC32</accession>
    <name>A0A0Q8VC32_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12710</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895682.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53219">
        <property type="protein sequence ID" value="KRC53219"/>
        <property type="gene ID" value="ASE19_12710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="498436at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="141"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="170"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="218"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="253"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="280"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="304"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="341"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="372"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="407" mass="41981" checksum="17FB342E42933ECD" modified="2016-01-20" version="1">MSTPSPLVSRDFRCLVAGISVSGLGSAMTPVALAFAVLHLGGSATQLGLVVAAFSLAEVVTILYGGVLGDRLPRQLLMQGSSAATCVSQGICAAVLVTDHGSIAFLTAIGVLNGCLGALAQPASNAMTRFTVTEAQLPRAVVVRSLANQTSYAVGFALAGIIVATAGPGWAIAVDAVTYGVAAAFFALIRAEAPTTASGERLLTDLADGAREVLRHTWLWLLIGQALLYHLCFGGAQGVLGPIVVGDSWGEEAWGWAMAALMAGFVLGGLVALRWRPAHLLRWGVVLLSLTAAFPLAMALADQLWLVLAGAVVHGVGLQLFSVSWDLAIQENVAEDKLSRVYAFDLVGSFVCRPLGLALTGPVAGVIGTDRWLVIVAAVMGVSSIAALAAPSVRRLTRQPAPELALT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCE9</accession>
    <name>A0A0Q8VCE9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">FHA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13335</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895793.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53331">
        <property type="protein sequence ID" value="KRC53331"/>
        <property type="gene ID" value="ASE19_13335"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2320.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022128">
        <property type="entry name" value="FhaA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042287">
        <property type="entry name" value="FhaA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12401">
        <property type="entry name" value="DUF3662"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00240">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FHA" evidence="2">
        <location>
            <begin position="155"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="241" mass="26236" checksum="4821B4C48BD10D3B" modified="2016-01-20" version="1">MGGLQRFEQRLEQAISGVFARTFRSAVQPVEIAAALQRELDNKAQVLSRQRRLVPNSFVVELSEGDLERLGPYDSALENELGEQLTEHAELQSYVFPGPIRIVFEPAGDLGTGRFRVRSQAEAAVTGHARRSSTQRTRAVLEVNGTQHPLVAPGLVVGRGSEADIRINDPGVSRRHAEFLVTSPSPSGTTPDGPVQVEVHDMGSTNGIRVDGQKVARAHLRDGSRVQIGHTSLTLRLLQEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCG5</accession>
    <name>A0A0Q8VCG5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_05195</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894221.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54860">
        <property type="protein sequence ID" value="KRC54860"/>
        <property type="gene ID" value="ASE19_05195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="22"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="118"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="187" mass="20352" checksum="63894D63D05B1E5B" modified="2016-01-20" version="1">MRDDDDRVAAAKRGEPQAWRELYRAHAGRLVLWLEARAPAGTESPEDLAAAAWLVAAERIADFHGDTADFGGWIFGIARNHGANAWRRSTTRAKGDDLLGAELPRSVPGPEWELIADEWVQQALAVLPPRERDVIACLEVLDLDVQATAQVLGMTAVAVRVARHRALRRLRSKLAEPAAAGPVGATE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCJ1</accession>
    <name>A0A0Q8VCJ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04915</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894270.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54811">
        <property type="protein sequence ID" value="KRC54811"/>
        <property type="gene ID" value="ASE19_04915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1414501at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="233" mass="25313" checksum="6208F47EEDF02313" modified="2016-01-20" version="1">MAESADATPLTADADPAYREAVVDLLAAIAYGEISAFERLAEDAKLAPSLADKVDLASMASIELTKVHALSDRIRSFGVDPFAAMEPFREPLDEFHRHTAPADWYEGLVKAYVGDGLANDFYREIAAYLDPDTRDLVITSMEEGTHAAFVVDRVRAAIVKDPRLGGRLALWGRRLMGEALTQAQRVAADRDALTALLAGGVDRPGLDLAALGRMFTRLTERHMARMGELGLDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCK4</accession>
    <name>A0A0Q8VCK4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14535</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896958.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53545">
        <property type="protein sequence ID" value="KRC53545"/>
        <property type="gene ID" value="ASE19_14535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041664">
        <property type="entry name" value="AAA_16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13191">
        <property type="entry name" value="AAA_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="812"/>
            <end position="875"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="875" mass="88991" checksum="4DB20E9192B6FBED" modified="2016-01-20" version="1">MAGAATVGSPADRQWPLAGRDREIAAALHALDAGARLVSIHGPTGVGKSRLLAEIAGRLAATGRHTVQLGGSAILSVVPLGALSAQFPGLSPYDGTSPDPARLFAEASSALAGSSEGRATVLLVDDATLLDGASMLLVAQLAAAGRVSLVVTLRPGDPLPETLVATWNAARDLRLDLEALDAEAARSLIEAALGGAVAHRTVTTLHSASGGNPLYLRELVLGARAAGSLADSTGVWQLAGAASATPTLRELVLARIGQLDATARDVLERLAVCGELRPDQLAGDPTAVVRPALAALETAGLVEVTASGASIAEPVHATVLTESMSRLRVEDILGEQAALLAAKAGGSPDLLQVTLWQLEAGLPVDADVILTATRLAAGTGDHASILRLAGAGLRAHPDHAELLLLLADAQLRTGQVDAALATLARHPSGANLAGRGGARTARLIAVAQLTGRGPLAALAVLDESLGNGPAHPALELTRAAALVAAGRPTDAERVAREAAPLLGDGEEARIRVLHARSIALACMGREDDALAAAAEAVAFAEATDGTVLGLCRAETQLAQATVLHLAGRYGQARTTAVRALAEAADTGDEILGRSIEFLLGRIALDAGHLASAERWLAETISGATSVGPPGLAGLARLSLTAAQGASGALELARATLAAVPEDLVPASWYALARAWADRGGDIDTTLRHSAEAAASALAGGNVALAATAWQVAIELDRPDAAAEPLRAMASSTGSRLVALLADHATAATAGDHVRLLEIADAWEERDGLRLAATAAATAARALGSSRTAASARARAEDLVRRCDGLDTPVVRQPDGVSPLTPREREIATLAAAGSTSKQIAAQLFLSSRTVDNHLQSVYTKLGITGRQALAEAFRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCZ9</accession>
    <name>A0A0Q8VCZ9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_05830</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894109.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54966">
        <property type="protein sequence ID" value="KRC54966"/>
        <property type="gene ID" value="ASE19_05830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Protein kinase" evidence="8">
        <location>
            <begin position="1"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="278"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="320"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="408"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="283"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="321"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="525" mass="54920" checksum="05C2E819DE002393" modified="2016-01-20" version="1">MRCIEKLGSGGFSDVFLYEQDHPRLKVAVKLLKSDVLDDNQRRQFAAEADVMAELAEHPFIVPVLGAGTAPDGRPYLAMRYFPPPDLGARVAKEQMSVPDALRTGIQLASAVETAHRSGIIHRDIKPANVLVSSYGVPALSDFGIAGRGDRAEDDDSLGVSMPWSPPEVLTGKSNGSAASDVYSLAATIWHLLVGRSPFSSPGDNGERALFSRILHGRPPAVGRADAPTSLDRLLQQAMAKDPAHRPRSALEFARHLQRVEQELRLARTEIVVLETEELPPAPPEASYAPPATPAGPVPAQVVSDDDGITMMKRPVMVRPSAPAPAVPPPPPAAAPASELTERRVPDVVPSTAPSPAQATEMRPAVVTPTAPAGPTPARTPGPRRGLVLAAVAVVVLAGGILAALLASSGDEDPSEPTPSAAGPSDPDDVIGGGLSDPIATPTITVRTVGSGLGQKVTFVARGADSDVDFRWTAQADGVGGYAPQDAKTARLELPVAFGPTKICVHLQLSRDGSSAGPFEKCWTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD79</accession>
    <name>A0A0Q8VD79_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Sugar ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_06400</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894469.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55060">
        <property type="protein sequence ID" value="KRC55060"/>
        <property type="gene ID" value="ASE19_06400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1200451at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03301">
        <property type="entry name" value="ABC_MalK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015855">
        <property type="entry name" value="ABC_transpr_MalK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040582">
        <property type="entry name" value="OB_MalK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17912">
        <property type="entry name" value="OB_MalK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="4"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="359" mass="38925" checksum="7E7B5031ABD4E4F8" modified="2016-01-20" version="1">MARITFEAAQRWYDGADAPAVPGIDLVVEDGEFLVLVGPSGCGKTTTLRMLAGLEDVDSGRILIGERDVTTLAPKDRDIAMVFQSYALYPHKSVRENLGFALKMAKVPREERERRVDEAAALLGLTELLDRKPRALSGGQRQRVAMGRAIVREPQVFCMDEPLSNLDAKMRVQTRSDIAQLQRKLGVTTVYVTHDQVEAMTMGDRVAVMNGGEIQQVDTPLALYDRPANLFVAGFIGSPQMNLLEARVDDRGVHLGDHTLPLDGTTSAPLPPQVTVGVRPEAWRLVGPGEGLPVRVHLVEELGSEGFAHGSAQLGDREVPVAVRVPERGQVTPEDVLHLAVPTGAAHLFDTATGQRLGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDF2</accession>
    <name>A0A0Q8VDF2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Probable cytosol aminopeptidase</fullName>
            <ecNumber evidence="8">3.4.11.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Leucine aminopeptidase</fullName>
            <shortName evidence="8">LAP</shortName>
            <ecNumber evidence="8">3.4.11.10</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Leucyl aminopeptidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">pepA</name>
        <name evidence="10" type="ORF">ASE19_04715</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>Release of an N-terminal amino acid, Xaa-|-Yaa-, in which Xaa is preferably Leu, but may be other amino acids including Pro although not Arg or Lys, and Yaa may be Pro. Amino acid amides and methyl esters are also readily hydrolyzed, but rates on arylamides are exceedingly low.</text>
            <dbReference type="EC" id="3.4.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>Release of an N-terminal amino acid, preferentially leucine, but not glutamic or aspartic acids.</text>
            <dbReference type="EC" id="3.4.11.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="8">Binds 2 manganese ions per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the peptidase M17 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.1" evidence="8"/>
    <dbReference type="EC" id="3.4.11.10" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55124">
        <property type="protein sequence ID" value="KRC55124"/>
        <property type="gene ID" value="ASE19_04715"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00433">
        <property type="entry name" value="Peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00181">
        <property type="entry name" value="Cytosol_peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011356">
        <property type="entry name" value="Leucine_aapep/pepB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000819">
        <property type="entry name" value="Peptidase_M17_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023042">
        <property type="entry name" value="Peptidase_M17_leu_NH2_pept"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008283">
        <property type="entry name" value="Peptidase_M17_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11963">
        <property type="entry name" value="PTHR11963"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00883">
        <property type="entry name" value="Peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02789">
        <property type="entry name" value="Peptidase_M17_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00481">
        <property type="entry name" value="LAMNOPPTDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="SSF52949"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00631">
        <property type="entry name" value="CYTOSOL_AP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8 10" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 8" id="KW-0464">Manganese</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CYTOSOL_AP" evidence="9">
        <location>
            <begin position="358"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="290"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="364"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="278"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="283"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="301"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="360"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS00631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC55124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="514" mass="52478" checksum="4B122F81B84700D7" modified="2016-01-20" version="1">MLPGQVNPPEFALSELLPGAIKGVDVVALPVLPGDDGEPVLLGPGAAELADELGLDLVGIAEVHGLTGATAEVAVVPVPEGSATNPDLRVVLLVGVGAAQIIDLRRAGAALARAARDRGAVATSIPTVHPDADDALEAFVVGTMLGGFEFHWRSKGPQHEPPRRVVLAGPTVTADRGVLERAVALGGAGWRSRLLATVPSNLKNPAWLAEQAADVAAASGLGIEVWDEQQLAKDGFGGILAVGAASATPPRLIRLDYTPAGVSARAAKKLPLVVLVGKGITFDTGGLSIKPAASMGSMKRDMTGGAVVLATMAALADVDCPVRVVGLVAAAENAISGSALRPGDVITHWGGRTTEVGNTDAEGRLVLADALAYAVAELDPAVLVDVATLTGAVKVALGQQVGGLFANDDALADVLRDAGDRAGEPLWRFPLYAGYEDKLASKVADASNDPGGAGAITAALFLQHFVGDVRWAHLDIASVGDVEKEWHEWTVGPSGFGARLLLTWLGTPEPVGSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDH6</accession>
    <name>A0A0Q8VDH6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">NADH-quinone oxidoreductase subunit F</fullName>
            <ecNumber evidence="12">7.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_10035</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 12">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 12">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 12">Belongs to the complex I 51 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="12"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894683.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52749">
        <property type="protein sequence ID" value="KRC52749"/>
        <property type="gene ID" value="ASE19_10035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="688908at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045271">
        <property type="term" value="C:respiratory chain complex I"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001949">
        <property type="entry name" value="NADH-UbQ_OxRdtase_51kDa_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011537">
        <property type="entry name" value="NADH-UbQ_OxRdtase_suF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011538">
        <property type="entry name" value="Nuo51_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037225">
        <property type="entry name" value="Nuo51_FMN-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019575">
        <property type="entry name" value="Nuop51_4Fe4S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037207">
        <property type="entry name" value="Nuop51_4Fe4S-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019554">
        <property type="entry name" value="Soluble_ligand-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01512">
        <property type="entry name" value="Complex1_51K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10589">
        <property type="entry name" value="NADH_4Fe-4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10531">
        <property type="entry name" value="SLBB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00928">
        <property type="entry name" value="NADH_4Fe-4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140490">
        <property type="entry name" value="SSF140490"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142019">
        <property type="entry name" value="SSF142019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01959">
        <property type="entry name" value="nuoF_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00645">
        <property type="entry name" value="COMPLEX1_51K_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 12" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5 12" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6 12" id="KW-0288">FMN</keyword>
    <keyword evidence="9 12" id="KW-0408">Iron</keyword>
    <keyword evidence="10 12" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11 12" id="KW-0520">NAD</keyword>
    <keyword evidence="14" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-0874">Quinone</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="NADH_4Fe-4S" evidence="13">
        <location>
            <begin position="328"/>
            <end position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU364066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC52749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="436" mass="46597" checksum="A629E36A8CE5B5FA" modified="2016-01-20" version="1">MADTLTPVLTDTWDAEQGWKLATYAARGGYAALDTAFAMSPDDVITAVKDSGLRGRGGAGFPTGMKWSFIPQDNPKPKYLVVNADESEPGTCKDIPLMMGNPHVLVEGVIISSYAIRANKAFIYIRGEVVQVIRRVQAAVAEAYAAGHLGKDIHGSGYDLDVVVHAGAGAYICGEETALLEGLEGRRGQPRLRPPFPAVAGLYASPTVINNVESIASVPAIVQNGAAWFASMGTEKSKGHGIFSLSGHVQKPGQYEAPLGITLRELLDLAGGIREGHQLKFWTPGGSSTPLLTAEHLDVPLDFEGVGGVGSMLGTRALQLFDETVCVVRAVLRWTEFYKHESCGKCTPCREGTWWLVQALTRLENGEGTEADLDQLLDQCDNILGRSFCALGDGATSPVSSSIQHFRDEYLAHLEHGGCPFDPAKSTAWAGQEVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDU2</accession>
    <name>A0A0Q8VDU2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10225</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894718.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52785">
        <property type="protein sequence ID" value="KRC52785"/>
        <property type="gene ID" value="ASE19_10225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1064289at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="244"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="274"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="14"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="36480" checksum="778A773116F7BD7A" modified="2016-01-20" version="1">MEERSAGPRRIAYVLPVYNEEENIAVFHAALVEAAAQRPDLAFEFVYVDDGSRDASLERLVELRAQDSRVTVVQFSRNFGHQLAVTAGIDLVAEAGSADAVIVMDTDLQDPPRVSLEMIERWEQGVEVVYAQRRTRKDTPFKRATAWGFYWALDRLASIEIPRNVGDFRLMDAKVVAEVARYREHDRFLRGIVAHVGFRQEALLFDRDERFAGETGYPFKKMLSFAASGILGFSTTPLKMISRLGYAISLLSVLLACYVLFIRVFKPDESVPGWAFLGVGMFMLSGIQLVMMGVIGSYLGRVYVETQDRPLYTLAMVARDRRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEE1</accession>
    <name>A0A0Q8VEE1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11570</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53024">
        <property type="protein sequence ID" value="KRC53024"/>
        <property type="gene ID" value="ASE19_11570"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="95" mass="10684" checksum="1A2E574162127503" modified="2016-01-20" version="1">MPGAPWSEFLARLVFAVMPFTVGMGLMALGSALGARLYYETGAGWIRISALVIVAAGLACMVWGAKEFRSPSHWRRGPQWLSEYEQRLKRPRRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEU6</accession>
    <name>A0A0Q8VEU6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">XRE family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12095</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895044.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53117">
        <property type="protein sequence ID" value="KRC53117"/>
        <property type="gene ID" value="ASE19_12095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="922937at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041413">
        <property type="entry name" value="MLTR_LBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17765">
        <property type="entry name" value="MLTR_LBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="25"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="289" mass="31449" checksum="933E3CDB0AC4CA02" modified="2016-01-20" version="1">MSDLGTTLRTWRDRMSPAAAGLPSRRARRAAGLRREELAELAGVSVDYVVRLEQGRATTPSVQVASALARALHLSDEERDHLYRLAGLAPPGAEQISRHIQPGMQRVLLRLGDTATAVFAADWQMLWWNRGWAALLGDPSATPHALRNFARDTFPAETLGQGPQLAHWPVTAFDGGASDAAVVSDLRRASGRYPRDRQLAALIRSLRTTNKRFADLWAAGEVSPHREGRKVVEHPAVGPVTVDCDVLIDADTDLKIVAMTAAPDTEDESKFRLALLSGVHAPARKTSAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFF2</accession>
    <name>A0A0Q8VFF2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12700</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895680.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53217">
        <property type="protein sequence ID" value="KRC53217"/>
        <property type="gene ID" value="ASE19_12700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="88" mass="9654" checksum="40E15FA806077476" modified="2016-01-20" version="1">MLELTYIAATSRLERLGIQERQVLQLIAHGQSETAIGRQLGLGPDATAELCDRVFDKLGLTPTAYISRRVLAVLTLRQAPSRARDAAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGA7</accession>
    <name>A0A0Q8VGA7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carboxymuconolactone decarboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14135</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897030.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53473">
        <property type="protein sequence ID" value="KRC53473"/>
        <property type="gene ID" value="ASE19_14135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1893149at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051920">
        <property type="term" value="F:peroxiredoxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029032">
        <property type="entry name" value="AhpD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003779">
        <property type="entry name" value="CMD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02627">
        <property type="entry name" value="CMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69118">
        <property type="entry name" value="SSF69118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMD" evidence="1">
        <location>
            <begin position="47"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="199" mass="21475" checksum="B2EE5A76B2B26E20" modified="2016-01-20" version="1">MTTTSSPRIPAQPITGLYGALVKKFATKMFGSVPESMGVLWHHLPALKASMAYGQKLQKWDECDETLKTYAHMAVASMVGCSWCLDFNYFMARDKGLDLDKAREVPNWRASTVFSPLERQVMEYAEAATLTPPTVTDEMVAPLLAELGPAGLLELTSVIGFANLTTRSNTALGIESEGFSAACGLKPLAERPVAVPSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGL2</accession>
    <name>A0A0Q8VGL2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">RNA polymerase sigma factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_14775</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Interacts transiently with the RNA polymerase catalytic core formed by RpoA, RpoB, RpoC and RpoZ (2 alpha, 1 beta, 1 beta' and 1 omega subunit) to form the RNA polymerase holoenzyme that can initiate transcription.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896917.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53585">
        <property type="protein sequence ID" value="KRC53585"/>
        <property type="gene ID" value="ASE19_14775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006950">
        <property type="term" value="P:response to stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014305">
        <property type="entry name" value="RNA_pol_sigma-G_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000838">
        <property type="entry name" value="RNA_pol_sigma70_ECF_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02960">
        <property type="entry name" value="SigX5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01063">
        <property type="entry name" value="SIGMA70_ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 6" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="7">
        <location>
            <begin position="26"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="8">
        <location>
            <begin position="135"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011344"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="335" mass="37204" checksum="960CF30319AA8B8D" modified="2016-01-20" version="1">MTVTEATTTHTTASDELADFDTLTGRYQRELMAHCYRMSGSVHEAEDLVQETFLRAWKASASFQGRSSVRTWLYKIATNVCLTNLEAKPRRPLPTGLGTADSAPSDELLEDHEVPWLEPIPDAAVEVAERDTIRLAFVAALQHLPARQRAVLILRDVLRWSAAETATALDTTTAAVNSALQRAHAQLAERGLTPDTVEADLDPAQRTLLDAYLQAFWRKDIEQIVQLLKYDATWDMPPFLNHFRGCDAIGELIGTKCPGGTNDMPMIETVANGQPAFGLYMRQPDGHFEPFHLQVLQMTGSGDGLRVEHVTAFFDARLFARFGLPERLPADYVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHA7</accession>
    <name>A0A0Q8VHA7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidase_S24 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892887.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56869">
        <property type="protein sequence ID" value="KRC56869"/>
        <property type="gene ID" value="ASE19_03435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1741894at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014124">
        <property type="entry name" value="Pept_S26A_Sod_Ni_maturase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015927">
        <property type="entry name" value="Peptidase_S24_S26A/B/C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00717">
        <property type="entry name" value="Peptidase_S24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02754">
        <property type="entry name" value="sod_Ni_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_S24" evidence="1">
        <location>
            <begin position="18"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="115" mass="12687" checksum="D68EF6B313E4D6F8" modified="2016-01-20" version="1">MEPEATGGRHADHPSVRRRVGLAVVRGDSMRPTLRPGDRLLVAYGARVRPGRVVVARFPDGTAVVKRAAEARGERWWLLGDNPEQGVDSRHRGAIAAEDVLGVAWARLWPRPRVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHK0</accession>
    <name>A0A0Q8VHK0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Branched-chain amino acid transporter AzlD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02880</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892797.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56779">
        <property type="protein sequence ID" value="KRC56779"/>
        <property type="gene ID" value="ASE19_02880"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008407">
        <property type="entry name" value="Brnchd-chn_aa_trnsp_AzlD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05437">
        <property type="entry name" value="AzlD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="101" mass="10189" checksum="6E0B3A7CC32837B3" modified="2016-01-20" version="1">MTWWAILAAGLGCYLLKLAGLSVPARVLARPVVARIADLVPVALLAALVAVQVLAAPSGRALALDARAAALGVAVLLLLARAPFLVVVFGSAASAALLRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHM7</accession>
    <name>A0A0Q8VHM7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02050</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892656.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56639">
        <property type="protein sequence ID" value="KRC56639"/>
        <property type="gene ID" value="ASE19_02050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1179151at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="16"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="48"/>
            <end position="55"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="268" mass="29362" checksum="E2D8B628AA83B285" modified="2016-01-20" version="1">MSEYSPYDASSAKALLEVDHVTLRFGGLTALDDVSFTINEGEILGLIGPNGAGKTTCFNVMTGVYRPTSGEARFDGTSLTKLKKHKITQLGLARTFQNIRLFKSMTVLENVMVGTDAHSKVGFWDALLRTPRHRRTEAASLARAKELLDMVGIKARHDELASNLSYGDQRRLEIARAMGTNPKLLCLDEPAAGFNPAEKVKLMELIRKVRDAGYTVLLIEHDMRLVMGVTDRIVVLEFGQKIAEGAPAEIRDNPAVIAAYLGVDEDAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHV0</accession>
    <name>A0A0Q8VHV0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07685</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895383.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53952">
        <property type="protein sequence ID" value="KRC53952"/>
        <property type="gene ID" value="ASE19_07685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1208964at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="326" mass="36056" checksum="87DCF0F841A2D0BC" modified="2016-01-20" version="1">MQHRQTLELAPGPRSVHDARRWVVATCREIGRDDLVDCAELAISELVTNAVLHGEPPVRMQLSGTTDHPRFEVHDGSTIPPQPSTQAGGFDLDAFDLDAFDALDEEQLLTLTTVGRGLDIVSRASIAWGAEIDDEGKAVWFEPADELSEVEGTPIQLTYSHSPFAEDHTRVGEVAVQINGVPVVAFGRFQRHYRDLRREIRLLALAHEDDYPLAKVLSEHFDALERPLRSNMGREQVDEAHGEGRTSVDLRLRMPRESARQIGGLIDLLDAADDFSRAQRLLTAPRLPDQRAFQIWFLGEFRRQAAGAPPVAWQGGAGSGAPSRAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHV1</accession>
    <name>A0A0Q8VHV1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent acyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14140</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897029.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53474">
        <property type="protein sequence ID" value="KRC53474"/>
        <property type="gene ID" value="ASE19_14140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="15"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="440"/>
            <end position="515"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="529" mass="57026" checksum="788753F2C936F257" modified="2016-01-20" version="1">MRLVDYLDKGASLGGDAPCLVCDGRTWTYDEVRDLAGRIASALAGRGVRPGDKVAILSSNDPVAFTCVFGISRAGAVWCPINPRNEADENRELLDLFDCSVLIFKASYAELVDKIRGDLPKVTTLVCLDADVDWAMGWEEFLSCAVQEVDEVSRLAGARTSTTELSDDLALIVGTGGTTGRPKGVMLTGENIETMTALTLIGYPWPDRPERPTYLALAPLTHAAGVLCFPVLTQGGSIVVMRQPDVAGFLANVAEHRVTHTFLPPTLIYMVLDHPDLESTDLSSLQCFWYGAAPMSAKRLEEALTRIGPVMAQLFGQTEAPMMISTMAPADHFRADGSIATERLSSAGRPAPLVTVSIMSGDGTLLPPGERGEIVVRSSLVMRGYYKDPEATAEASAHGWHHTGDVGYLSDRPGDEGFLHIVDRAKDMVITGGFNVYSTEVEQALMAHPAVADCAVVGLPDEKWGERLTAVLQLRPGQSVETAEVQAFVKERIGSVKTPKQVEVWPDLPRSKVGKVLKTEVKAQLTPHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI05</accession>
    <name>A0A0Q8VI05_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SWIM-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10450</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894756.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52823">
        <property type="protein sequence ID" value="KRC52823"/>
        <property type="gene ID" value="ASE19_10450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1040546at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04434">
        <property type="entry name" value="SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="SWIM-type" evidence="2">
        <location>
            <begin position="53"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="440" mass="46811" checksum="3A1C1D7893FB3B44" modified="2016-01-20" version="1">MPRWTLAAVEKAAPDASSLTAARKLAVPGPWSETGSSETLVWGRCQGSGRTPYQVSIDLAGPAYRCSCPSRKFPCKHALALLLLWVRSDGAVADVAEPADFAGDWAATRAERAAGAAVEAARAPVDPEARARRIAERRATMSAALDDFAQWLADLAATGTAAARRQPWAWWDAAAARLVDGQVPGLAERLRDMSSAVSSRDDWSDHLLSEMGRWWLAVQAWRRWDDLEPATRGDLRTYLGWSWTADDLAAAAAAVPDASTPAAAGTWQVLGAHREETGRLKEQRTWLRSPGTGETLLVLDFAGGPNPLPVAQLDGSVLDVPVTRYPGSAPPRARFDAAPARVSVDAALPEGGSLADARATLAQLWLRNPWAVRTPAVVRGRIVPPAEGATAALVDEDGTTVALLGADPWDALARTGGAVTDVFGELEERGFRLLSVTVVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI49</accession>
    <name>A0A0Q8VI49_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08420</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895509.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54077">
        <property type="protein sequence ID" value="KRC54077"/>
        <property type="gene ID" value="ASE19_08420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="311112at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2390.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007795">
        <property type="entry name" value="T7SS_EccB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044857">
        <property type="entry name" value="T7SS_EccB_R1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40765">
        <property type="entry name" value="PTHR40765"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05108">
        <property type="entry name" value="T7SS_ESX1_EccB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03919">
        <property type="entry name" value="T7SS_EccB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="479" mass="49708" checksum="E285E5CEC5EC2355" modified="2016-01-20" version="1">MATKKDLVEAYSFSRRRLVTAFVSGAPGGREVEPARPGRMIVGGVALAVLLIAGAAIAGALSGRAPEDWNSPGNLVTDNHGALYVVLTDEQSQGQAKLRPVINVTSARLILGSKVQTKSIPDDDLASADKGPSIGILDAPPTVPGPDRLLNSGWVSCTAAGKGVQTEVTPSAAVEPAPDSAFVVRAQKSGVRYVIAQATAPGHRNRAYRYRAPEDADALYSDLHLEAADEIVVPDAWLALFPVGGTLDQDGLGLDGWGEAANLAGYSTARVGDYYERSGQVYAVSRDGFVLLDEFAFAVLRNTRLGKGYPRLIEENSESAPFDNVGSTYDDAAWPQAPVSGGSTPSTATVCGVLDTAEGEEPGVTLATFPSGPTMLGDIAPADADVRVEPGYGAVVHSADWNTSSGGTVHLVDDAGRSYSIAGDLEVENLGYGGVPAVVVPESWLQLFRPGPDLSQLDALCPPRPTSSAAEAPTGPSCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIC4</accession>
    <name>A0A0Q8VIC4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_08545</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895529.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54097">
        <property type="protein sequence ID" value="KRC54097"/>
        <property type="gene ID" value="ASE19_08545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01782">
        <property type="entry name" value="MCEVIRFACTOR"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="41"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="120"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="345" mass="36234" checksum="3B002F10FB69CD70" modified="2016-01-20" version="1">MAMKMFRERNPLPLGLVVVVALLVMVLVVLNINGIVGLFGRKYSVMLPEAAGIKQGDPVRVSGLTVGRVGTVELDGKGVRVDFALTETDIDLGDKTTAAVSVETVLGDKALVLTSHGDGALAEGAQIPMERASVPYDVNDALTDLQQEAQDIDVDQVASALETVAGTLQGATPELSNAITGMSRLSQTISSRDDSLRSLLANADQFSDILADRSGDLTALMRDGNTLFTELLKRREDISALLTNLSAMATELRGLVADNDDTIGPALKELNKVIATLQANKSNISETLRGLSVYATGLGEVVSSGEFFSAYLGNLLPGNLLQPDLGELGLSGIDLSGLLGKAGQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIP9</accession>
    <name>A0A0Q8VIP9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11605</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53031">
        <property type="protein sequence ID" value="KRC53031"/>
        <property type="gene ID" value="ASE19_11605"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="27640" checksum="0F4DF730E3531796" modified="2016-01-20" version="1">MTQAEVAAGEVTAAYLSRVERGQRRLAAPLLERIAGRLHTTAAELLATHSLNEARTRALRVEEAAVLVAIGEYARAEEVAAGVLGRLDAGEDGALRASAVRVRAEALLALGDHESAVSVTEPLVDSNDLNAVRALILLGRCHCALDAPARAMKVIDLAERLISTLGVEGLGESLWLAAVKAEAQCQQGRFHRASQICRDGLAASAHLPVDADASRYLRAAAAESMTGGATPAAMELTTAALTILDARNGLTALRSIQTRAEALT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ21</accession>
    <name>A0A0Q8VJ21_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Sulfate adenylyltransferase subunit 2</fullName>
            <ecNumber evidence="2">2.7.7.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">ATP-sulfurylase small subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Sulfate adenylate transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_07160</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PAPS reductase family. CysD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.4" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895290.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53858">
        <property type="protein sequence ID" value="KRC53858"/>
        <property type="gene ID" value="ASE19_07160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="499077at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004781">
        <property type="term" value="F:sulfate adenylyltransferase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019419">
        <property type="term" value="P:sulfate reduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01713">
        <property type="entry name" value="PAPS_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002500">
        <property type="entry name" value="PAPS_reduct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011784">
        <property type="entry name" value="SO4_adenylTrfase_ssu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01507">
        <property type="entry name" value="PAPS_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002936">
        <property type="entry name" value="CysDAde_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02039">
        <property type="entry name" value="CysD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PAPS_reduct" evidence="7">
        <location>
            <begin position="34"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="282"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00030256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00031812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="304" mass="34907" checksum="F172FDCF1810AAA3" modified="2016-01-20" version="1">MSQTHSDYRLSQLDQLEAESIHIFREVAAEFEKPVLMFSGGKDSIVMLRLAEKAFYPAKIPFSILQVDTGLDFPEVMETRDRWVSRLGVNLVVASIDDAIKNGIIPDAAKISRNRLQIPTLLNAIEENGFTAAFGGGRRDEEKARAKERVYSHRDEFGQWDPKNQRPELWSLYNGRLHEGEHMRIFPISNWTELDVWDYIGREEIEIPNIYFSHQRRVFERDGMLMSETPLNPLREGEVVEERTVRFRTCGDITLTGCVESTASTIAEIIDEVAVARKTERGATRGDDRFSEAAMEDRKKEGYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLX1</accession>
    <name>A0A0Q8VLX1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Succinate-semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04365</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894359.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54722">
        <property type="protein sequence ID" value="KRC54722"/>
        <property type="gene ID" value="ASE19_04365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="384611at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="3">
        <location>
            <begin position="5"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="449" mass="47987" checksum="DAB0C76A0EB1E1B8" modified="2016-01-20" version="1">MSDVKYAVIDPSDGRLVSEYPTHTDEEISRAVGSANEAFRSWGRHGSVVERAELLRKVATLHVERRDQFAAIISREMGKAVESALFEIDFSASIYAYYADNAAAFLADQDLPLMGGEGTALLRREPLGVLLGIMPWNFPAYQVARFAAPHLAAGNTVLLKHAPQCPESASFLETVFRDAGFPPGAYVNVYATNAQVETIIADSRVQGVSLTGSERAGSAVAEIAGRHLKKVVLELGGSDPVIVLSTDDMDATVEDAAQARVAGNAGQACNAGKRVIVHESIYDEFVEKFTARMVGAPAVPLSSQAAAERLEQQVNDAVAQGAQLAADSERQGAWYPTSVLTGIEVGSATSQEELFGPVAMVFKVGSEDEAIVVANDTPYGLGSYVFTTDREQARRVAEQIDAGMVIINGVYATGAELPFGGVKRSGYGRELGPLGIDEFVNKKLIRTVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM58</accession>
    <name>A0A0Q8VM58_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HNHc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02225</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892683.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56665">
        <property type="protein sequence ID" value="KRC56665"/>
        <property type="gene ID" value="ASE19_02225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1629654at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003615">
        <property type="entry name" value="HNH_nuc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13391">
        <property type="entry name" value="HNH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNHc" evidence="1">
        <location>
            <begin position="213"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="35914" checksum="8736D85E449535B1" modified="2016-01-20" version="1">MRITLGVTDNAWADFLRARDHVTEANFWVPSAQRFTGRASLDEPFLFKTKSPREGLVGGGFFAGYYEQRVSEAWAVFGTGNGVDSEAALLRAIRTYRERTRKPFHPDPTIGCVVLRNIFFAPEGDELPAPEHWGRSIVQGKTYDDTDPDWHYVLHAFRAFQGGARVDHVWDRDLVAVDLDRDDARFGAPVLTQHRLGQGSFRLAVLDAYENRCAITGSRMAPVLQAAHIRPYAGGGEHVVTNGLALRSDIHGLYDRGYLGVDEKYRLRVSPRLNADFGNGVEFYSREARGEVIRLPLRGVDRPDHESLTWHMDEVFLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMV5</accession>
    <name>A0A0Q8VMV5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Arginine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Arginyl-tRNA synthetase</fullName>
            <shortName evidence="9">ArgRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">argS</name>
        <name evidence="13" type="ORF">ASE19_03315</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg)</text>
            <dbReference type="Rhea" id="RHEA:20301"/>
            <dbReference type="Rhea" id="RHEA-COMP:9658"/>
            <dbReference type="Rhea" id="RHEA-COMP:9673"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32682"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78513"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.19"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 10">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.19" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892868.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56851">
        <property type="protein sequence ID" value="KRC56851"/>
        <property type="gene ID" value="ASE19_03315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1146366at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004814">
        <property type="term" value="F:arginine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006420">
        <property type="term" value="P:arginyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00671">
        <property type="entry name" value="ArgRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00123">
        <property type="entry name" value="Arg_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001278">
        <property type="entry name" value="Arg-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005148">
        <property type="entry name" value="Arg-tRNA-synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036695">
        <property type="entry name" value="Arg-tRNA-synth_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035684">
        <property type="entry name" value="ArgRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008909">
        <property type="entry name" value="DALR_anticod-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11956">
        <property type="entry name" value="PTHR11956"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03485">
        <property type="entry name" value="Arg_tRNA_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05746">
        <property type="entry name" value="DALR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00750">
        <property type="entry name" value="tRNA-synt_1d"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01038">
        <property type="entry name" value="TRNASYNTHARG"/>
    </dbReference>
    <dbReference type="SMART" id="SM01016">
        <property type="entry name" value="Arg_tRNA_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00836">
        <property type="entry name" value="DALR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55190">
        <property type="entry name" value="SSF55190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00456">
        <property type="entry name" value="argS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Arg_tRNA_synt_N" evidence="12">
        <location>
            <begin position="4"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="DALR_1" evidence="11">
        <location>
            <begin position="431"/>
            <end position="557"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="9">
        <location>
            <begin position="131"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM01016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC56851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="557" mass="60558" checksum="DFEA3DA5DD6A8964" modified="2016-01-20" version="1">MTPAQLSTTIVEALTSLVDSGALTLPDGVPAEVTVERPRQKGHGDYATNVALQLAKKARTNPRALGEQLAERLRTADGISDVEVAGPGFLNISVEAGAQGKVAAEVVAAGASYGTSEVLAGQRINVEFISANPTGPLHLGHTRWAVLGDAIGRVLAAAGAEVTREFYINDRGVQMNHFADSIIAAALGEPKPEDGYAGEYINDLAKAVEAASPGIFQLEGAERQASVRAAGYEIQLKEQQKSLEHFNTHFDVWFSELSLHESGSVPETLQRLKDLGHVFEDGGALWMRTTDFGDDKDRVLIKSDGELTYFASDTAYYLNKRERGFDNCIYLLGADHHGYVGRLRAMAACVGDDPDKTLDVMIGQLVKILKNGEELKLSKRAGNIVTLDDLASEIGVDALRYSLARYPADSPLVLDVAEITKQSNDNPVYYVQYAHARTCRMIENARDLGMALPADDAFDPSLLDHERDGELLRALAEYPRVVASAAELREPHRVARYLEDTASVFNKWYDTKECRMLPQGDDPVQPVNEARLVLTVATRTVIANGLDLLGVSAPERM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNA0</accession>
    <name>A0A0Q8VNA0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_22965</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892562.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58924">
        <property type="protein sequence ID" value="KRC58924"/>
        <property type="gene ID" value="ASE19_22965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1177734at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="40"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="125"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC58924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="352" mass="36732" checksum="45B3AB0CC875B79C" modified="2016-01-20" version="1">MARVISRNQLARRGLITLVALLVIGTFVTLRTNGTFGSQPHVTADVANAGGSLRSGSDVKMNGVIVGKVHEVRRADNGDGVTVDMAMSKEDLKAVPANVVARILPATVFGTTFVDLVVHGAPTGELKAGDSVKADSSQGTLELQQALDDIDRLTKALGPAELASAIGSAAEALDGRGNQIGQTVRTLNSYLDRLNPRMPQVRSDLQQLAQTTRLVDEIAPDLLDATDDALVAMNTIVTQEAAITALLSGGTTLARTGSGFLARNQANLVKFINGSAVLIDAVHDNRRAGITDALAINIALGTTLPKAVREGFVNTDGTIKLGVPPYYKSSQRPQFRTAGTSDAGFASLGGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNE1</accession>
    <name>A0A0Q8VNE1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Riboflavin synthase subunit alpha</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_23200</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892522.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58964">
        <property type="protein sequence ID" value="KRC58964"/>
        <property type="gene ID" value="ASE19_23200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1276859at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00402">
        <property type="entry name" value="Riboflavin_synthase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023366">
        <property type="entry name" value="ATP_synth_asu-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001783">
        <property type="entry name" value="Lumazine-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026017">
        <property type="entry name" value="Lumazine-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21098">
        <property type="entry name" value="PTHR21098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00677">
        <property type="entry name" value="Lum_binding"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000498">
        <property type="entry name" value="Riboflavin_syn_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00187">
        <property type="entry name" value="ribE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51177">
        <property type="entry name" value="LUMAZINE_BIND"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="Lumazine-binding" evidence="2">
        <location>
            <begin position="1"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="domain" description="Lumazine-binding" evidence="3">
        <location>
            <begin position="1"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="repeat" description="Lumazine-binding" evidence="2">
        <location>
            <begin position="97"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="domain" description="Lumazine-binding" evidence="3">
        <location>
            <begin position="97"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC58964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="202" mass="21554" checksum="BC55F0EC0F428B57" modified="2016-01-20" version="1">MFTGIVEEFGTIEAIEDQGDAIRLTIASDITLSDAGLGDSIAVNGCCLTVAERTDGTWTADVMAESLAKTSLGDLAVGDRVNLERAVTAEKRLGGHIVQGHVDGVGQVVRRTPSEHWEVVEISMPAEMGRYLVDKGSITVDGISLTVVEAGDDSFTVSLIPETLARTTLGFRSPGDRVNLEVDVIAKHVEKLVRAYTKENNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ29</accession>
    <name>A0A0Q8VQ29_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00485</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896794.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59546">
        <property type="protein sequence ID" value="KRC59546"/>
        <property type="gene ID" value="ASE19_00485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1484817at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007497">
        <property type="entry name" value="DUF541"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04402">
        <property type="entry name" value="SIMPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="226" mass="24421" checksum="7928DA432E7CD817" modified="2016-01-20" version="1">MATEFTVRGSHLAYQQPERGTVRATLSFQGPALPPVYERVVRDLEAVKTSVAALHDPERGPVTWWSTKHVRTWAERPWNQDGKQLPLVHHASVGVEVKFRDFAALGAWVGQHVAATAGFSLDGVVWALTEQHRIELERTVRSRAVQDAARRAQEYADALDLGTVRAVAVADAGMLSPGLHPAGGGGPAPYQRMAAMAKDSAGGAELELSPEDIEVSADVDARFVVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ90</accession>
    <name>A0A0Q8VQ90_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Helicase_C_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_00775</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896749.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59592">
        <property type="protein sequence ID" value="KRC59592"/>
        <property type="gene ID" value="ASE19_00775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1388804at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032830">
        <property type="entry name" value="XPB/Ssl2_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13625">
        <property type="entry name" value="Helicase_C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase_C_3" evidence="4">
        <location>
            <begin position="477"/>
            <end position="599"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="671"/>
            <end position="690"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="764" mass="79914" checksum="9242A1C1DA3151B6" modified="2016-01-20" version="1">MEDGPSGHRSLADQLRSWSDERLGRLLAQRLDLATPAPHDFGQLASRAAVRNSIARALDSLTRGELSVLDALVVAGQTNESELVTLVDADPAFVVATVRRLVDLALAWESPEGLRPLSVVGDSMVGGVEAGVSGLRPRSAQPRPAAELLEVIAALPSGARALLDHVVDGGSTAKSGAARIGLRPEDAETPAELLIAHRLLVPAGSLQPGLLAVPGEVGLALRGGRTTTAPVDVAPVVAAEPRSARLTGSAAVGAATDVVRRTGQLLEWWGTRPAAALRTTGLGVRELRATAAHLQVSEPEAALVVEVAAEAGLIGTRADTDGNPVWVPTDEFDRWRDLPPAEQWTVLARAWLASPRLPSLVGERGPDQKPWNALTPELAASGMPEAKAMVLAVLAGLPEGEGLAAGTGLPSLVARIAWERPRRPRTRPDLVAWAVAEAAVLGLTGADVLSPYGRALARGEDPAPVLAALLPPPVDHVLIQADLTAVAPGPLEPDLARRLQQVADVESQGAATVYRFTPASVRRALDSGWTTAEVHAFVLAASRTPVPQPLTYLVDDVARSFGRLRVGAATSFIRSEDEVALAELVNHPRSAGLGLQRLAPTVLVSSLPLDLLLARLRELGTAPVVEGPDGVVRVGATEGLRARTPRTRETTDAARSAARQAAHIATAVRTVRQGDEDARSRPASASAPGGGVLSALRDAIERRGAVLIGFTDNQGVVSERSVQPLVVEGGQLTARDTDAEADDPDAERRYAVHRITRVVPVGSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ96</accession>
    <name>A0A0Q8VQ96_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00905</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896727.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59614">
        <property type="protein sequence ID" value="KRC59614"/>
        <property type="gene ID" value="ASE19_00905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="120"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="155"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="HisKA_3" evidence="2">
        <location>
            <begin position="222"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="409" mass="43098" checksum="67D686D3FA9FB898" modified="2016-01-20" version="1">MTDFTTMQILAPVRLGKPLDVTVDGVLDRLRLTLVSAGYAASFVPSLVLAIGSVLCLALGPALGLGILLAQLVVPATAGLTAAHREVSGRLLGTEIRAGYAGSARGLRWMRDPARWRNVGFLWFSASGGFAMSLLPVALLTMPLTWLVLAVTASGWIWLVLLVLSGPALVAWWFVTPPLVRARALAERAMLGGSRVARLEERVERVEVSRAETLDHSAAEVRRIERDLHDGAQARIASVGMSVGLAEKLVHTDPEAAAALLREARETTMDALDDLRSVVRGIHPPVLADKGLSGAIEALALALPVPTSVAVDAGRLPAPVESAAYFAVAECLANTVKHAAATRAWVTGRYDGERLRITVGDDGRGGADAHGSGLSGVARRLDAFDGDLRVLSPAGGPTLVELEVPCRTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQC7</accession>
    <name>A0A0Q8VQC7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">FHA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_00755</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896753.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59588">
        <property type="protein sequence ID" value="KRC59588"/>
        <property type="gene ID" value="ASE19_00755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1872843at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010432">
        <property type="entry name" value="RDD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06271">
        <property type="entry name" value="RDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="50"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="107"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="FHA" evidence="8">
        <location>
            <begin position="306"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="221"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="6">
        <location>
            <begin position="221"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="397" mass="40611" checksum="6DC4A6ABE756C548" modified="2016-01-20" version="1">MSHLPPTAEPSMFPPAELDRRFSAFVVDRVIAWGVSAAVGYAVHELGGASVATAVLSALGCDVLIGIVLAVLVGTTGVTPGKTAVGQRVVRRADGRPIGVPAALARYAVLGIAGLPTVGMGLATLAWTAAADPTRQRRALHDRFGDAVVVDVRPVADDSEVEDDRPQQLVNLTAMRLMPVAPAQPESIASIPVPQPAPTPVPAPVPAPAPAAAPPPIAASAPPVAAPAPVAPPAPAAPPAPAAPPAPRAPGAHRAPPAAPAEPAPERTQLRPAAPDPAAPAAAAPEPARWRVAFDTGEAFVVEGLALVGRRPEPRPGEPVRHVVPLRSSDMSLSKTHAQFQVAPDGALVVMDRGSTNGSYVVRRGLSKALTAGRPSTLLPGDEVRFGDRTMTVEREQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQU7</accession>
    <name>A0A0Q8VQU7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glucose-6-phosphate 1-dehydrogenase</fullName>
            <shortName evidence="5">G6PD</shortName>
            <ecNumber evidence="5">1.1.1.49</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">zwf</name>
        <name evidence="9" type="ORF">ASE19_05315</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the oxidation of glucose 6-phosphate to 6-phosphogluconolactone.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>D-glucose 6-phosphate + NADP(+) = 6-phospho-D-glucono-1,5-lactone + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:15841"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57955"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:61548"/>
            <dbReference type="EC" id="1.1.1.49"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the glucose-6-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.49" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894398.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55143">
        <property type="protein sequence ID" value="KRC55143"/>
        <property type="gene ID" value="ASE19_05315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1153269at2"/>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004345">
        <property type="term" value="F:glucose-6-phosphate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00966">
        <property type="entry name" value="G6PD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001282">
        <property type="entry name" value="G6P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019796">
        <property type="entry name" value="G6P_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022675">
        <property type="entry name" value="G6P_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022674">
        <property type="entry name" value="G6P_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23429">
        <property type="entry name" value="PTHR23429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02781">
        <property type="entry name" value="G6PD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00479">
        <property type="entry name" value="G6PD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000110">
        <property type="entry name" value="G6PD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00079">
        <property type="entry name" value="G6PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00871">
        <property type="entry name" value="zwf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00069">
        <property type="entry name" value="G6P_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1 5" id="KW-0313">Glucose metabolism</keyword>
    <keyword evidence="2 5" id="KW-0521">NADP</keyword>
    <keyword evidence="3 5 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G6PD_N" evidence="7">
        <location>
            <begin position="12"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="G6PD_C" evidence="8">
        <location>
            <begin position="187"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="15"/>
            <end position="22"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="214"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="233"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="324"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC55143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="482" mass="53661" checksum="D546F1C3CF7474A0" modified="2016-01-20" version="1">MAPKTQKPVTVVLFGATGDLARRKLLPGLLHLFETGLLPQLQIVGTSLDEHTTESFVAFVHEAVKEFSGDDGDMDAWPEFAPLLHWAPGAEGAAGLRAAVEKAESTLEGDRIRLHYLSVPPKAALSVVKTLDDAELVEGSRIIMEKPFGVDLASAKALNAELHKTFDESQIYRIDHFLGKEAAQNILAFRFANGLFEPIWHRNNIDHVQIDVPEELGLDQRANFYESTGAYKDMVVTHLFQVLAFTAMEPPTSLAPDAIREEKDKVFRSMLPIDPADVVRGQYQGYRDIPGVARESETETFIALKCFIDNWRWAGVPFYLRTGKRMAEGARIISIAFKEPPKSMFPANSGVGDHGPDHLTFDLADKAKMSLSFYGKRPGPGMKLDKLSMQFAMGDTTWAGSVLEAYERLIYDAARGDQTLFNSAEGIERLWEVSAPLLENPPIVRPYRQGSWGPNQIHQLIAPYAWRLPFERAWRDPNATGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRU7</accession>
    <name>A0A0Q8VRU7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02835</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892788.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56770">
        <property type="protein sequence ID" value="KRC56770"/>
        <property type="gene ID" value="ASE19_02835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1411552at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025568">
        <property type="entry name" value="DUF4334"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025951">
        <property type="entry name" value="GXWXG_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14232">
        <property type="entry name" value="DUF4334"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14231">
        <property type="entry name" value="GXWXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GXWXG" evidence="1">
        <location>
            <begin position="25"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4334" evidence="2">
        <location>
            <begin position="94"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="157" mass="17518" checksum="2CD144D9375CCC88" modified="2016-01-20" version="1">MTDIRTRFDELRAAERAEPADLDTLWADLAPVRVEGILGAWRGGDFATGHLASTVLEKVRWHGKRFDSALAAVPLVCRDENGELYSNKDAGGGGEASLWEVGFRGEVTATMVYDRMPVFDHFKQVDDRTLMGIMNGKLEAAFGVADLYYFWLERDDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VS79</accession>
    <name>A0A0Q8VS79_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">DNA alkylation response protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_24010</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894023.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57389">
        <property type="protein sequence ID" value="KRC57389"/>
        <property type="gene ID" value="ASE19_24010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="433393at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041504">
        <property type="entry name" value="AidB_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18158">
        <property type="entry name" value="AidB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AidB_N" evidence="8">
        <location>
            <begin position="8"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="175"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="281"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF18158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC57389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="543" mass="58863" checksum="F92041587845C2CF" modified="2016-01-20" version="1">MTTHEVTNQVPPLVGHDTSADPALLEGIEREGAAWALPEIREVGRLAGTQEAMDWGRLAERVPPRLLTHDRYGRRVDEVEYVPAYHQLMETAVSHGIHAAPWADDRPGAHVARAAKFYSWNVDAGHGCPISMTYAVVPALRANPELAARFEPLLTNRAYDFGLRDPATKRGLIAGMSMTEKQGGSDVRANTTTATPVAGEPGAYRIVGHKWFTSAPMSDMFLTLAQAPGGLSCFLLPRVLPGGDANTIRFLRLKDKLGNKSNASSEIEYDDAIGWLVGEEGKGVKTIVEMVNMTRLDCVIGSASGMRTALVQAAHHARHRAAFGKLLIDQPLMRNVLADLAVESEAATTAMMRLAGANDRAIHGDEGEAALRRLALAATKYYVCKRGPVLANEALECLGGNGYIEDFDLARIYRELPLLSIWEGSGNVAALDALRAIGREPASLDAFFTEAELAVGTDTRYDDALTSLKKELTNFDDIELRARRLVEQIAVIFQAGLLIRHATPAVADAFCATRLARDWGSAFGTMPSGLDLTPILDRTEPGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSB5</accession>
    <name>A0A0Q8VSB5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_24030</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894027.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57393">
        <property type="protein sequence ID" value="KRC57393"/>
        <property type="gene ID" value="ASE19_24030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="325071at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140658">
        <property type="term" value="F:ATP-dependent chromatin remodeler activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022138">
        <property type="entry name" value="Helicase_SWF/SNF-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12419">
        <property type="entry name" value="DUF3670"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="471"/>
            <end position="629"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="3">
        <location>
            <begin position="757"/>
            <end position="918"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="134"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="942" mass="101967" checksum="E09255A5755BBCDF" modified="2016-01-20" version="1">MSFVPVTGPASFRAGEQGEALIEFTDGEPARRRVALPVRAALPVLSRAHTTDGAHPSVALLSGAALLGLRLVAAGKVAPASDERPGWRVDGLDARDHDAVRRLAAARAHDGLDLEAADRLVRQVLDAVADAMPRAAPAVPSRPSPAAADVLDDSGRAPEDFADRVRRRLAERTAREHEQAARSRRRAALPELVRISLRVEADEEELVAGSVRVVLQVHDERDPLHVCDAVALWTGTEEEHGFGSRARVHASIALRAAADVWPVLDRYLALSVPDQLALDGEEISSLLAAVGDLRAAGVDVHWPRSLGPELTTRAVLERQREKGEKGGKGELPLQDSPFSAEGLFAFSWQVALHGEPLTDEEMGELARAASPVIKLRGAWTIVDPTTAQRARKRLIRKATGAQALAAALTGTTDLPAQGDDEPASAQVVVGASVLKVREQVLAAATRDPLPEPPGLEATLRDYQRHGLTWLADLTGLGLGACLADDMGLGKTITLIALHLHRRVTGASRDQSTLVVCPASLLGNWEGEIRRFAPGVEVRRFHGGSRSLGDLDGGFVLTTYGTLRRDVATLAGVPWDLVVADEAQHVKNSRTSTARALRQLPTRARVALTGTPVENELTELWSILDWCVPGLLGSRLAFRRAWAAPIESGTEPTKARQFADLIGPFLLRRRKSDPGIAPELPPKTETDHLLGLTREQVVLYEAFVRDSMERIERADPESRRGLVLALLTGLKQICNHPAQFLKQSGAVRLAGRSEKLELLDELVATVLAEDGAVLVFTQYVAMARLIEQHLTTAGIPHQFLHGGTPVAEREAMVRRFQDAENGVPVFLLSLKAGGTGLNLTRADHVIHVDRWWNPAVEEQATDRAYRIGQTKPVQVHRMVTHGTIEERVAQLLTRKQQLADAVLGRGDAALTELSNEELRDLVTLRRQARESAEAHDADAVAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VU97</accession>
    <name>A0A0Q8VU97_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA polymerase III subunit alpha</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_02300</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892697.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56679">
        <property type="protein sequence ID" value="KRC56679"/>
        <property type="gene ID" value="ASE19_02300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="561611at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1600">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011708">
        <property type="entry name" value="DNA_pol3_alpha_NTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041931">
        <property type="entry name" value="DNA_pol3_alpha_thumb_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040982">
        <property type="entry name" value="DNA_pol3_finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029460">
        <property type="entry name" value="DNAPol_HHH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004013">
        <property type="entry name" value="PHP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003141">
        <property type="entry name" value="Pol/His_phosphatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004805">
        <property type="entry name" value="PolC_alpha"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32294">
        <property type="entry name" value="PTHR32294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07733">
        <property type="entry name" value="DNA_pol3_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17657">
        <property type="entry name" value="DNA_pol3_finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14579">
        <property type="entry name" value="HHH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02811">
        <property type="entry name" value="PHP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00481">
        <property type="entry name" value="POLIIIAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00594">
        <property type="entry name" value="polc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="5" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="POLIIIAc" evidence="9">
        <location>
            <begin position="11"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC56679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1188" mass="130978" checksum="50CE5221C49870CA" modified="2016-01-20" version="1">MAAGSGEADFVHLHVHTEYSMLDGASLLDGLFTRVNDLGMTSIAMTDHGNLHGAYDFYSKAKKYGVRPIIGIEAYVTPGTPRGERRRVRWGKGDAAEEGGDDVAGGGAYTHMTMWAESTEGMHNLFRLSSRSSLEGYYFKPRMDKEILAEHSKGLIVSTGCPSGAIQTRLRLGQWDEAVREAAELQDIFGKDNVFLELMDHGISIEKRVRDDLLRLGREMNIPPIATNDSHYNNPEDADAHDALICVASGKRLSDTNRLKFDGGGYYIKSAAEMRELWADRFGMPEACDNTVAIAERCEVEFNENTGGYMAKADIPAGETEESWFRKEVWRGIESRYPGDRLNQEVKDRVEMELAVVAQKGYCGYFLVVADFINWSKDNGIRVGPGRGSGAGSIAAYALRITDLCPLEHGLYFERFLNPERPSMPDFDIDFDDARRGEVIQYVSDKYGAERVCQIATFGRLKSKAAIKDAARVLDHGFAIGDKITKAMPPDVMGKGVPLKEIFNPEHKRYNDGGEFRALYEQDPDVRTIYQTALGLEGQIRNWGVHAAGVIMSSEPLLDIVPIMARPQDGAVITQFDYPMCESLGLVKMDFLGLSNLRILEDALTNIKANKGEEVVLEELSFDDRATYELMGRGDTLGVFQLDGGGMRALLRSMLPDKFADITAVSALYRPGPMGADSHNKYAHRKNGRQPIEPIHPALAEALEPVLGETYGLIVYQEQVMAIAQVLAGYSLGAADNMRRVMGKKKKAELDAQFDGFQAGMLERGFPKDAIKVLWDTLVPFADYAFNKSHSAAYGVITYWTAYLKANYPTEYMAALLTSVKDDKDKMAIYLNECRRMKIQVLPPDVNESAHDFTAVGPDIRFGLTAVRNVGSNVVDGIAEARVEKGRYTDFNDFLSKVPASVCNKRVIDSLIKAGAFDDMKHLRRALVVIHETAVDQYVDIKRNEAIGQDSLFAGLGDDDADGGFGVSVAIPDIDEWDKMTLLGHEREMLGLYVSDHPLLGLEHVLSNGTDCTIGQLVTDEGRAHNSTVTVAGLITQIQRKITKNGDPWATVTLEDLEGSIDVLLFPSSYRLAAPYLTEDAIVRVRGQLDTDREPAQLRGQEVTVPDLETRADGPVVISLPSTRCTGPVVQQLKDVLVTHAGLTEVRLQLLSRDSTKVMRLGDNLRVTPSSALFADLKQLLGPGCLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXZ4</accession>
    <name>A0A0Q8VXZ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00230</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896835.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59505">
        <property type="protein sequence ID" value="KRC59505"/>
        <property type="gene ID" value="ASE19_00230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1242748at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032109">
        <property type="entry name" value="Big_3_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16640">
        <property type="entry name" value="Big_3_5"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360488" evidence="1">
        <location>
            <begin position="34"/>
            <end position="641"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="2">
        <location>
            <begin position="285"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="2">
        <location>
            <begin position="375"/>
            <end position="455"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="641" mass="63321" checksum="CC0C9CAF8FAB5D64" modified="2016-01-20" version="1">MRSTFTRRRRIVAGLAATAVPAALLALAPAADAANPTGSNYELFFETNLTGDPANKIVGGGRWGHEGASHLEATTVSGDLTDGGAALAAAFGGNTDNFALVFVPTSANGSAEEPTVTAGQTVADAYPYFTEIGFATAMQGASNPSNDQVLLVSTAAEWADWTADGKPSQIASSNDLVLHDAVRPGAPVSAHPKGKSILNRWAAGQNMSAVIVKTTGAFVNGIPVIDASTGHAEAAWVPFTTAVDPAIGTTSGIATSGAYNFAVAPATTTTTSLAVTETSPQLETATLHLTATVSPAAAGTVTFKDGSTTVGSAPVSGGSAAITASLPAGSHNLTAAFAPADTAAYAASTSSAVPFTTTATPAVATTTVVSIPAGAIASGDSVPVTASVTPTSAVGAVQFKADGVNFGSPVPLVSGVASTSWTAVGGGHNISAAFIPANPAAFTPSTSSAQLATVSYPANQPVPDEQTIVADVDAGAITISTPYTPTNPLVVDGDPSTPLVADPLKLNPTNTMYTGSAAFEHIIVTDTRAGGLPWTLTALAGALSEPLGGTINGQNVGLTNLAEQPGTSGVGVLTATDVQAANAVAASDAGALGLGGTTGHEVLRRAAPGTGTVEYKGLLTIQAPTSTQAGHYTGTVTFTVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM97</accession>
    <name>A0A0Q8UM97_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Rossmann fold nucleotide-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19905</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46136">
        <property type="protein sequence ID" value="KRC46136"/>
        <property type="gene ID" value="ASE19_19905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="902542at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="33451" checksum="7727E4DD4751C090" modified="2016-01-20" version="1">MNRVASGGVRSTRSRTVVVEARTDTDRQWQSGAAEAAAAHLAGLDVTRDALYSPAELYDRDVYADTFDARANVWARAACGPAEALAEVLHDQAVDTALATWVRDRPLVGVMGGHAADRGTVAYADAARLGALLGDRHVVATGGGPGAMEAANLGGRMAGLSAAALEEALGLVAAVPSFRPSIDAWVGAARAALALSPDPRPSLGVPTWHYGHEPPNLFATAIAKYFRNALREAILLQVCDAGIVFLPGAGGTVQEIFQDACENYYATDAAVAPMVLVGRTYWTRTLPAWPLLQALAQGRAMEGHVHLVDTVDEAAALFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNE0</accession>
    <name>A0A0Q8UNE0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21940</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896254.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46484">
        <property type="protein sequence ID" value="KRC46484"/>
        <property type="gene ID" value="ASE19_21940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2081841at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="81"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="107"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="157"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="169"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="189" mass="20533" checksum="0AFA88397B6F0561" modified="2016-01-20" version="1">MATVVVGRVGTDVVVPSDVCVKSGVPTTHRVTLRGSTTPDWVIVLLVFTIIGWLFASVMSSRKYRVDVPFQPYLDKQWRQLRDLAVVVGSIGVIAAVVASLSGLDHAWVPLLLTVVAIVLGNVNSYRHLVGVQQRGPETLVLTRVHPAAAEAIVRGRALQSSSAPHQPTGEHRYDDQRSHGVQPDQHRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNG1</accession>
    <name>A0A0Q8UNG1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Methylmalonyl-CoA mutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_22155</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>adenosylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="2">Heterodimer of an alpha and a beta chain.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896288.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46520">
        <property type="protein sequence ID" value="KRC46520"/>
        <property type="gene ID" value="ASE19_22155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="720283at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016866">
        <property type="term" value="F:intramolecular transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016176">
        <property type="entry name" value="Cbl-dep_enz_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006099">
        <property type="entry name" value="MeMalonylCoA_mutase_a/b_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01642">
        <property type="entry name" value="MM_CoA_mutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51703">
        <property type="entry name" value="SSF51703"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="METMALONYL_COA_MUTASE" evidence="3">
        <location>
            <begin position="82"/>
            <end position="501"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="584" mass="61200" checksum="FD04F6444272BC69" modified="2016-01-20" version="1">MSRIVLSLVTDSPLTLAQPEDAHSRADWEAATAAVLRKTRKLGDNDPDSAVWDKLTRPTLDGIGIVPLGLPGGTPTPVRPTRAGAWDVRSLVSGPDAKLANEAALVDLDGGVTSLWLAADASTDVAATLKDVLLDLAPVVLDAPSATTAVAEAFLALPGAKHPDSNLGIDPLGTMLREIPVAVDEAVAELQTLARKADQHDVRAIVVDATAAHDLGASDGQELGWSIAAGVAYLRWLTDHGLSVDDAAGQIEFRYAATDEQFPTIAKLRAARVLWARVLELSGATTTAQRQHAATSRPMLSKYDPYVNMLRGTVAAFAAGVGGADAVTVLPFDSANGLPDAFGRRIARNVNHLLIDESHVAAVADPAGGAYAVEQLTGELAEAGWAEFQRLEQEWESGHDFDPFRERIAAVVAKREAAIAKRKQPLTGVSEFPNLAETLPERAADPLNDRVRRYGASFEALRDEPAAKPVFLATLGTVAQHTARATFVSNLLAAGGIAVDVAGPTSGVEELVAAYRSSGGQPVVCLAGTDAAYEEWGAAAAAALREAGATHVIVAGKAADYTDDSAAMGVDALEFLNRTREKLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNN3</accession>
    <name>A0A0Q8UNN3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Signal peptidase I</fullName>
            <ecNumber evidence="3 5">3.4.21.89</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_20035</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>Cleavage of hydrophobic, N-terminal signal or leader sequences from secreted and periplasmic proteins.</text>
            <dbReference type="EC" id="3.4.21.89"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Membrane</location>
            <topology evidence="5">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the peptidase S26 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.89" evidence="3 5"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46604">
        <property type="protein sequence ID" value="KRC46604"/>
        <property type="gene ID" value="ASE19_20035"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006465">
        <property type="term" value="P:signal peptide processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06530">
        <property type="entry name" value="S26_SPase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000223">
        <property type="entry name" value="Pept_S26A_signal_pept_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019758">
        <property type="entry name" value="Pept_S26A_signal_pept_1_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019533">
        <property type="entry name" value="Peptidase_S26"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43390">
        <property type="entry name" value="PTHR43390"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10502">
        <property type="entry name" value="Peptidase_S26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00727">
        <property type="entry name" value="LEADERPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02227">
        <property type="entry name" value="sigpep_I_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00761">
        <property type="entry name" value="SPASE_I_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_S26" evidence="6">
        <location>
            <begin position="3"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR600223-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF10502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="255" mass="27547" checksum="4C3A23F95EE83B81" modified="2016-01-20" version="1">MWQESILLLAVALGLAVLIKAIFVQAFYIPSESMEPGLVKNDRILVQKVSYWFGGTPKRGDVIVFEDPGEWLGPADAQGPTGFASVLSKVGLYPTGGHLVKRVIGVAGDIVTCCDEQGRISVNGKAIDESDYLGPDPGACNAELLDDWYVEKGTAFSGRCDWTIGPIPAGKVLVLGDNRGHSADSRAHLCGPDEDPCTQSPWVDTDLVVGKVFTLIWPRDRWRWISRPEVFDDVPDSPPADLVEKAKKVGAITGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UQR6</accession>
    <name>A0A0Q8UQR6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Maltose alpha-D-glucosyltransferase</fullName>
            <ecNumber evidence="3">5.4.99.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Maltose alpha-D-glucosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_19815</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-maltose = alpha,alpha-trehalose</text>
            <dbReference type="Rhea" id="RHEA:15145"/>
            <dbReference type="ChEBI" id="CHEBI:16551"/>
            <dbReference type="ChEBI" id="CHEBI:17306"/>
            <dbReference type="EC" id="5.4.99.16"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glycosyl hydrolase 13 family. TreS subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.16" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895897.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46121">
        <property type="protein sequence ID" value="KRC46121"/>
        <property type="gene ID" value="ASE19_19815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1573900at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047471">
        <property type="term" value="F:maltose alpha-D-glucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006047">
        <property type="entry name" value="Glyco_hydro_13_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032091">
        <property type="entry name" value="Malt_amylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045857">
        <property type="entry name" value="O16G_dom_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012810">
        <property type="entry name" value="TreS/a-amylase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00128">
        <property type="entry name" value="Alpha-amylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16657">
        <property type="entry name" value="Malt_amylase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00642">
        <property type="entry name" value="Aamy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02456">
        <property type="entry name" value="treS_nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aamy" evidence="7">
        <location>
            <begin position="23"/>
            <end position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001595"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00031378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="571" mass="65514" checksum="29FF54DF510E7589" modified="2016-01-20" version="1">MTATEQVVLNDEPDWFRRAVFYEVLVRSFRDSNADGTGDFRGLTEKLDYLQWLGVDCLWVPPFFTSPLRDGGYDVADYTGILPEIGTVEDFHAFLDAAHERGIRVIIDFVMNHTSDAHPWFQASRSDPEGPYGDFYVWSDTDELYQDARIIFVDTEPSNWTYDQVRGQYFWHRFFHHQPDLNFDNPRVHDAMLEAMAFWLDMGLDGFRLDAVPYLYERAGTNGENLPETHDFLKKVRRFVDDNYPGRVLLCEANQWPTDVVEYFGPEEDESGEVVGTECHMAFHFPVMPRIFMAVRRESRFPISEIMEQTPAIPAGCQWGIFLRNHDELTLEMVTDEDRDYMWGEYAKDPRMKANIGIRRRLAPLLDNDTNQIELFTALLLSLPGSPVLYYGDEIGMGDNIWLGDRDGVRTPMQWTPDRNAGFSSATPGKLHLPAIQDPVYGYQSVNVEAQLENPSSLLHWTRRMIHIRRQHDAFGLGTFEDLGGSNPTVLSYVRELPGASDVILCVNNLSRFPQPVELDLRRFEGRVPVELIGGVPFPAIGELPYLLTLSGHGFYWFRLTDPDTTGRPVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8USI1</accession>
    <name>A0A0Q8USI1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Trehalose 6-phosphate phosphatase</fullName>
            <ecNumber evidence="2">3.1.3.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22550</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 2">Removes the phosphate from trehalose 6-phosphate to produce free trehalose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>alpha,alpha-trehalose 6-phosphate + H2O = alpha,alpha-trehalose + phosphate</text>
            <dbReference type="Rhea" id="RHEA:23420"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16551"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58429"/>
            <dbReference type="EC" id="3.1.3.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Glycan biosynthesis; trehalose biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the trehalose phosphatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.12" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896354.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46585">
        <property type="protein sequence ID" value="KRC46585"/>
        <property type="gene ID" value="ASE19_22550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1374424at2"/>
    <dbReference type="UniPathway" id="UPA00299"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004805">
        <property type="term" value="F:trehalose-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005992">
        <property type="term" value="P:trehalose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044651">
        <property type="entry name" value="OTSB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003337">
        <property type="entry name" value="Trehalose_PPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43768">
        <property type="entry name" value="PTHR43768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02358">
        <property type="entry name" value="Trehalose_PPase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00685">
        <property type="entry name" value="T6PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00024179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="280" mass="29847" checksum="0957063F1CA80078" modified="2016-01-20" version="1">MRFASAEGEQRYDAVVGVASRTVVGLDFDGTLAPIVDDPARAHIHPGAAEVLVELATEVAAIAVITGRPARQALDLGGLEEVGDALEAAGKELFVFGQYGNERWSSGRRRILGARPPRGLATFERDLPRTLRQADASDAFVEDKGLAVAVHTRRLPDAEQAFERLLPPMRELARQHGLVLEPGRSVIEVRSAGSHKGMVVNRLAAVLDAEGFVFAGDDLGDVEAFEALEDLAGQGLATLRVCSASDEQSALMDLSDVVVRGPDGVLELLGRLAADARARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8USI9</accession>
    <name>A0A0Q8USI9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19855</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056918009.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46601">
        <property type="protein sequence ID" value="KRC46601"/>
        <property type="gene ID" value="ASE19_19855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1515911at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="171"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="202"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="238"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="263"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="8"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="143"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="307" mass="31261" checksum="F50BDD1714B1B0AB" modified="2016-01-20" version="1">MTRKDQALAALVAVIWGFNFVVIDWGMGDVPPLLFLAARFLAVLVPAVLLLPRPPVPWRTILAVGAFMSLGQFGFLYVAMDAGMPPGLAGLVLQAQVVLTIALAAVVLRERPTRPQVAGVLLGVVGLVVVGLGRGGHVPAAALVLFLSAALMWAIGNVVSRASGATGGLSLTVWSALVVPVPLVLLSLVVDGPAAVADGVAAFGWRAGLSTLYTAGLASLVGYGLFNGLLSRNPSSAVVPWILLVPPVAIGSAWALLDEVPSSGELAGGALLVLGVLVAQVRFSGRTRSTPALHPQGSPAPLAPAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UTH6</accession>
    <name>A0A0Q8UTH6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">D-alanyl-D-alanine dipeptidase</fullName>
            <shortName evidence="3">D-Ala-D-Ala dipeptidase</shortName>
            <ecNumber evidence="3">3.4.13.22</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_20245</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>D-alanyl-D-alanine + H2O = 2 D-alanine</text>
            <dbReference type="Rhea" id="RHEA:20661"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57416"/>
            <dbReference type="ChEBI" id="CHEBI:57822"/>
            <dbReference type="EC" id="3.4.13.22"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M15D family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.13.22" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895968.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46195">
        <property type="protein sequence ID" value="KRC46195"/>
        <property type="gene ID" value="ASE19_20245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="880710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016805">
        <property type="term" value="F:dipeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000755">
        <property type="entry name" value="A_A_dipeptidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009045">
        <property type="entry name" value="Hedgehog_sig/DD-Pept_Zn-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01427">
        <property type="entry name" value="Peptidase_M15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF026671">
        <property type="entry name" value="AA_dipeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55166">
        <property type="entry name" value="SSF55166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="3" id="KW-0224">Dipeptidase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR026671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="207" mass="22259" checksum="8684481F2E7FB371" modified="2016-01-20" version="1">MTILLSDPRVRAVPVTETGEPLVRLPHDLSPAGALVRTDLADRLVAADRLLPRGIRLRVVEGFRPVEQQQAIIASYTAELRALHPQIGPVALERLTSRFVSPVEVAPHVAGAAVDLTLVDVCGDELDMGTAIDATPEQSDGRCWFSAAGIGPDARAHRTVLAKVLGSQGLVNYPTEWWHWSFGDRYWALMTGAPQALYGPIASAVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUR6</accession>
    <name>A0A0Q8UUR6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 5">Thymidylate synthase</fullName>
            <shortName evidence="5">TS</shortName>
            <shortName evidence="5">TSase</shortName>
            <ecNumber evidence="1 5">2.1.1.45</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">thyA</name>
        <name evidence="8" type="ORF">ASE19_18610</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the reductive methylation of 2'-deoxyuridine-5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + dUMP = 7,8-dihydrofolate + dTMP</text>
            <dbReference type="Rhea" id="RHEA:12104"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57451"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <dbReference type="EC" id="2.1.1.45"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Pyrimidine metabolism; dTTP biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the thymidylate synthase family. Bacterial-type ThyA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.45" evidence="1 5"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893323.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48922">
        <property type="protein sequence ID" value="KRC48922"/>
        <property type="gene ID" value="ASE19_18610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1212177at2"/>
    <dbReference type="UniPathway" id="UPA00575"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004799">
        <property type="term" value="F:thymidylate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006231">
        <property type="term" value="P:dTMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006235">
        <property type="term" value="P:dTTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00351">
        <property type="entry name" value="TS_Pyrimidine_HMase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.572.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00008">
        <property type="entry name" value="Thymidy_synth_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045097">
        <property type="entry name" value="Thymidate_synth/dCMP_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023451">
        <property type="entry name" value="Thymidate_synth/dCMP_Mease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036926">
        <property type="entry name" value="Thymidate_synth/dCMP_Mease_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000398">
        <property type="entry name" value="Thymidylate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020940">
        <property type="entry name" value="Thymidylate_synthase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11548">
        <property type="entry name" value="PTHR11548"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00303">
        <property type="entry name" value="Thymidylat_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00108">
        <property type="entry name" value="THYMDSNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55831">
        <property type="entry name" value="SSF55831"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03284">
        <property type="entry name" value="thym_sym"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00091">
        <property type="entry name" value="THYMIDYLATE_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4 5" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thymidylat_synt" evidence="7">
        <location>
            <begin position="3"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="5">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="126"/>
            <end position="127"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="166"/>
            <end position="169"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="207"/>
            <end position="209"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="263"/>
        </location>
        <ligand>
            <name>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC48922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="29679" checksum="3E83AD487C697B2B" modified="2016-01-20" version="1">MRAYLDLVQRILDEGVAKEDRTGTGTLSVFGHQMRFDLTEGFPLVTTKKIHTRSVFGELLWFLRGDTNVRWLQERGITIWDEWADENGDLGPVYGAQWRSWPTPDGGHIDQLAQVIRQVRANPDSRRHIVSAWNPSQVDDMALPPCHSLFQFYVADGRLSCQLYQRSADVFLGVPFNIASYALLTHMVAQVAGLGVGDFVHTLGDAHLYSNHLEQARLQLTREPRPLPKLVLNPAVTEIDAFELEDITVEGYDPHPGIKAPIAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV10</accession>
    <name>A0A0Q8UV10_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19185</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49016">
        <property type="protein sequence ID" value="KRC49016"/>
        <property type="gene ID" value="ASE19_19185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2065417at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="183" mass="20319" checksum="CA7F7F9DC97A646F" modified="2016-01-20" version="1">MSVVTSLVVVPNALAVLTLLAVAALAVGTVWLERSLRASRRHTEELLAAAASDADVLREQLAGLEVRLRTQVTAVETRDRVPVAVVDDREYLITDLGKDRGPQVPARIVPAPQFADILLRESVIKGAALAAGLRRALSPEIRNRIRFEMKREVKRSRKERKLMLKAARRDWESRQRAGIEVSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVC6</accession>
    <name>A0A0Q8UVC6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP-dependent DNA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19430</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893462.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49060">
        <property type="protein sequence ID" value="KRC49060"/>
        <property type="gene ID" value="ASE19_19430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2061599at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014145">
        <property type="entry name" value="LigD_pol_dom"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02778">
        <property type="entry name" value="ligD_pol"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="314" mass="35648" checksum="C4A991634C2127DB" modified="2016-01-20" version="1">MASPAIEIEVDSRVVRVSNPDRVYFPAIGATKLDLVEYYLSVGEGIVNALWERPCMLHRFPKGLDGDKVHQKRLPAGAPDWVETVQLFFPRWKRTADELCVTELASVIWAVQMSTVEFHPWNSRRGSTEMPDEWRIDLDPGPESTYDDIRKVAHVAHEVLDELGAVGHPKTSGSKGLHVYVRVKPEHDHKGVRRAALAFAREVERRAPELVTTTWWKKDRDPAAVFVDYNQNARDHTIAAAYSVRGLPDARVSTPIRWDEVDDADPRDFTIRTVPARFAELGDLHHDIDDHVFDLAPLLEWADRDEIPVEGDEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UW29</accession>
    <name>A0A0Q8UW29_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Ammonium transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_20125</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ammonia transporter channel (TC 1.A.11.2) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895948.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46173">
        <property type="protein sequence ID" value="KRC46173"/>
        <property type="gene ID" value="ASE19_20125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001905">
        <property type="entry name" value="Ammonium_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018047">
        <property type="entry name" value="Ammonium_transpt_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43029">
        <property type="entry name" value="PTHR43029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00836">
        <property type="entry name" value="amt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01219">
        <property type="entry name" value="AMMONIUM_TRANSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0924">Ammonia transport</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="40"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="100"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="129"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="180"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="214"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="251"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="277"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="301"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="335"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="369"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="domain" description="Ammonium_transp" evidence="9">
        <location>
            <begin position="8"/>
            <end position="421"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="437" mass="45775" checksum="A55C222E40E37883" modified="2016-01-20" version="1">MENGYYTWMLVSASLVLLMTAPGLALFYGGMSRTKSVLNMLMMSFTALGVVGMVYALWGWSMSYSTTYGNTDGHAGKEIAKLFSDPFNQFGLEKTLPDNYVFVAFQLTFAVITAALISGAVADRLKFSAWLVFLPIWVTLSYFPLAHMVWGGGFLSGVEGGLADWLFSGPDGAEVAPIDYAGGTVVHINAGVAGLVLALLVGKRIGFGKEPFKPHNLTLTMIGAGLLWFGWFGFNVGSIVNLDAYTTETGLVWLNTTLATCAAMMGWLLVEKLRDGHATSLGAASGVVAGLVAITPACGNLVPWSSMVLGVVAGGVCALAVGLKYKLGYDDSLDVVGVHLVGGLIGTIGVGFLASNDGGLLTGGGAKQLVVQVCVALFAIVWSAFFTLVVGLAIKFTIGLRLEADDEVDGIDFVEHGESAYDLGTGGGARRSSVLTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UX13</accession>
    <name>A0A0Q8UX13_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">GH16 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21195</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896124.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46353">
        <property type="protein sequence ID" value="KRC46353"/>
        <property type="gene ID" value="ASE19_21195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1046649at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000757">
        <property type="entry name" value="GH16"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51762">
        <property type="entry name" value="GH16_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359503" description="GH16 domain-containing protein" evidence="1">
        <location>
            <begin position="32"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="domain" description="GH16" evidence="2">
        <location>
            <begin position="148"/>
            <end position="437"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51762"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="437" mass="46113" checksum="7C14CA0833CB367A" modified="2016-01-20" version="1">MTPHPRRLFSLAALTLVLGAAAVVAPLVAEATPPAPTITVVAAPNPVGQNDTATLTVTVDPGLTGETVQLEQKALGLLWSLVDSTTLDGDATAQFAVQQSLVGNYQYRVKVAANANHTAGTSAVTTLEVQTLGTPVAVPGSYPCAGVSPAASIVRPGGGAWQCTFSDEFSGTALDTTYWHVATQGLMTQPKTEKACFGDQSTGNVKVENGSLHLTASVKAAATACPARPTKSSRKFGATVWHNTPDGTRPTLQQTYGYYEVRAKLPSLHGGTEGRAVLPPATPNYPTDTAKGLQETFYLWPTTDRYGFWPLSGEMDFAEFYSAAGNLNAPAMHQLSGTTGGGWKSPGCNIDPTTGGSVGGFNTYKFQWTSTRLTTWVNDNPTPCSDLAISGGPFNKGFYLILMQAFGNADTLNEYTLAPGDFPDVGTTEIDYVRVWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXB3</accession>
    <name>A0A0Q8UXB3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22095</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056918006.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46509">
        <property type="protein sequence ID" value="KRC46509"/>
        <property type="gene ID" value="ASE19_22095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1843957at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="273"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="274"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="316" mass="33981" checksum="1A7237E552051162" modified="2016-01-20" version="1">MTSDPSMDSPALLLACAEELVQSGRQVEIDKLRILLHWADVFSGDPQAEPGAVPARRGGPKLVHPGGKGTPGISDLALDEIAIARCEGVGATRRALADALDLRHRLPLVWAGAQKLECETWVVRRVATLSRKLTRDQARIVDVAVAAALGQAPNRILAIAEAKIIEADTTTQQNRIEANQRHNGVWYSRPKPGDQIADVDNTAGVATAYARLDEADARVHEAFIEQLAVALAEQASPEEQDLGMDHWRAEAFAMSADPAAVLAFXPKWSRPAAVQRRSWSTSRPPTPATSHPSPEWRTSAPGPSPRSATSSPGTPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXN8</accession>
    <name>A0A0Q8UXN8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CoA-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15570</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893507.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50038">
        <property type="protein sequence ID" value="KRC50038"/>
        <property type="gene ID" value="ASE19_15570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1380130at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008410">
        <property type="term" value="F:CoA-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004165">
        <property type="entry name" value="CoA_trans_fam_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01144">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00882">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="257" mass="27571" checksum="EE0DB4091D58260D" modified="2016-01-20" version="1">MSNEVVTRADVCAAAIADAFKDDGEIFGSPMGLLPMLGVRLAKLTSNPDLVISDGESVFLSGVPPLFAKGDVVEGWIPFRRVFDVVAYGKRHVMMGATQVDRHGNQNISAIGPFAQPKRQLLGSRGAPGNTVNNRTSYWVPKHSDRVFVEQVDIVSGVGPARAKAAGAGASRYNDIHRIVSNLGVFDMGGADDTMRLVSVHPGVTVDDVVAATGFALDIPADHSQVATTREPSYEELVIIREVLDPKGLRFKEVPHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXQ2</accession>
    <name>A0A0Q8UXQ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22315</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896313.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46545">
        <property type="protein sequence ID" value="KRC46545"/>
        <property type="gene ID" value="ASE19_22315"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021385">
        <property type="entry name" value="DUF3017"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11222">
        <property type="entry name" value="DUF3017"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="82" mass="8600" checksum="2ACAE512C51DC3FE" modified="2016-01-20" version="1">MFYLVVLLVTGGGLAVAALDEWRTGIRIVSGALLLAAVLRLVLPDRDAGMLAVRHRALDVGILVLIAAALLFLAATIPDQPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY18</accession>
    <name>A0A0Q8UY18_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">UDP-N-acetylglucosamine 1-carboxyvinyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_16410</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893656.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50188">
        <property type="protein sequence ID" value="KRC50188"/>
        <property type="gene ID" value="ASE19_16410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="537477at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008760">
        <property type="term" value="F:UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019277">
        <property type="term" value="P:UDP-N-acetylgalactosamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01555">
        <property type="entry name" value="UdpNAET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001986">
        <property type="entry name" value="Enolpyruvate_Tfrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036968">
        <property type="entry name" value="Enolpyruvate_Tfrase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005750">
        <property type="entry name" value="UDP_GlcNAc_COvinyl_MurA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00275">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="SSF55205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1" id="KW-0132">Cell division</keyword>
    <keyword evidence="3" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="4" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="7">
        <location>
            <begin position="18"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC50188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="513" mass="56323" checksum="1130C9C32602541C" modified="2016-01-20" version="1">MTTDEPNDDYKGRIGNLIRDARKHRGLTQAQLAERLATSQSAINRIEKGHQNLSLEMLARIGAALDSEIVALGAGPTHLRVKGPTTLSGSIDVKTSKNAGVALLCASLLNRGRTTLRKVARIEEVNRLLEVLDSLGVQTRWINAENDLEIIPPKEIDLTRIDEEAARRTRSVIMFLGPLLHRVDSFELPYAGGCNLGTRTVEPHMSALRPFGLEVKATDGWYHAQANRAIVPGRPIVLTERGDTVTENALMAAALHPGTTVIRNASSNYMVQDLCFYLQALGVEVEGIGTTTLTVTGRESIDVDVDYSPSEDPIEAMSLLAAAIVTRSEITIQRAPIEFLEIELAVLEEMGFRYDRSEEYLAANGRTRLVDITTRSSDLVAPRDKIHPMPFPGLNIDNLPFFAVIAAVAEGTTYLNDWVYDNRAIYLTELNKLGGRVTLLDPHRVQIDGPTSWTGTELVCPPALRPAVVVLLAMLASKGTSVLRSTYVIHRGYEDLAERLSSLGAEIETFRDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYD9</accession>
    <name>A0A0Q8UYD9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16920</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893746.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50277">
        <property type="protein sequence ID" value="KRC50277"/>
        <property type="gene ID" value="ASE19_16920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1208418at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011737">
        <property type="entry name" value="CHP02206_TP0381"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09529">
        <property type="entry name" value="Intg_mem_TP0381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02206">
        <property type="entry name" value="intg_mem_TP0381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="122"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="154"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="194"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="245" mass="27217" checksum="76F981CD7FAC012D" modified="2016-01-20" version="1">MDPYGTTHLVPLGVFVVGLVAAVLLGRRHASDDGPTRFSRACALAIPAVTVPFQVVDLIWNYDVDVTLPLHLCDLAWIAATWALWTHRQLPVTLTYFWGLTLTIQGVLTPSLNEDLPHPRYFAFWALHLLIVWAAVHLVVGLRKAPRWRDYRAAVVITLTWAAATYAFNVVADTNYGYLVRKPGSSVLDLLGPWPWYVAEEIAVVLAVWALMTLAAQWWRRRSGSHGVEAAVDVDDLARGGGEQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYF2</accession>
    <name>A0A0Q8UYF2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Acetone carboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16945</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893751.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50282">
        <property type="protein sequence ID" value="KRC50282"/>
        <property type="gene ID" value="ASE19_16945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1985304at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="70" mass="7815" checksum="0A6D101DF7C8405B" modified="2016-01-20" version="1">MTDGSTAPDGPDLCSAKGCREPAVWQLQWNNPKLHTPDRRKIWLACAEHRESLELFLGARGFLKDTVAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYJ2</accession>
    <name>A0A0Q8UYJ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Fic protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_16745</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50364">
        <property type="protein sequence ID" value="KRC50364"/>
        <property type="gene ID" value="ASE19_16745"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003812">
        <property type="entry name" value="Fido"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036597">
        <property type="entry name" value="Fido-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040198">
        <property type="entry name" value="Fido_containing"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13504">
        <property type="entry name" value="PTHR13504"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02661">
        <property type="entry name" value="Fic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140931">
        <property type="entry name" value="SSF140931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51459">
        <property type="entry name" value="FIDO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fido" evidence="3">
        <location>
            <begin position="119"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="205"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="209"/>
            <end position="216"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR640198-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR640198-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="384" mass="41201" checksum="FF1D99B7C88E8088" modified="2016-01-20" version="1">MRGGTIDDRTLREVRVSLPPPIADLDLQVPPALAADAENALRHLAVLDATHGRELASLSTLLLRAESVASSKIEQVEASMDDYARALHGNRSNASATSMVASTRALDDLISSVTDGSPILLDRILRAHGVLMADDPSEAPYAGRLRDMQNWIGGSDHSPRGAWYVPPPARLVEPGLRDLLTFANRDDVPVLTQAAVSHAQFESIHPFTDGNGRIGRALINTVLRRRRATSRIVVPLASAIVVRRQDYFDALGAYRAGDVAPLLASFTRGTTIAALESATTAERLVALPPLWEERAGYPRRGSATARLLENLLDVPVLSADDAQTHLGGAASSTYAAIGRLHETGIIRPLTTRSRNQVWIAADVADELEDLGVRIGAAAVDSLRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYN1</accession>
    <name>A0A0Q8UYN1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Butyryl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_16805</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50366">
        <property type="protein sequence ID" value="KRC50366"/>
        <property type="gene ID" value="ASE19_16805"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="76"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="195"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="303"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC50366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="433" mass="45396" checksum="C8E99D7E2F488735" modified="2016-01-20" version="1">MGYLVAGLNRLAQTDLLDKVRLRKPAEQAVFSVTRTGFKTMTNASRTFAKAGKKGQPGTRPAHAAASGVFDLTPGEDEQMLVDVVTEFADEVVRPAAFEADKACTAPDDLLKASLEIGLPILGLPEALGGVSEERSAMAGTLVAEALAKGDMGLAVATLAPGSVATAIGLWGTDAQQQTYLPAFSAEDGTVPAAALALNEPTVLFDVLSPSTTAKKSGDGYVLNGTKSLVARGDSAELFVVGADLDGKPVLFLVESSTEGLSVEGDPAMGVRAASMTKLVLEDVKVSADAVLGETDGSTYTECVRLSRLAWCALAIGTGQAVLDYVTPYVKEREAFGEPIANRQSVAFMVANIAIELQGMRLLTYRAASRAAAGKDFTREVALARKACTDKGMQIGLDGVQLLGGHGFVKEHPVERWYRDLRAIGIMEGTVLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ42</accession>
    <name>A0A0Q8UZ42_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PE-PGRS family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17185</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893900.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50372">
        <property type="protein sequence ID" value="KRC50372"/>
        <property type="gene ID" value="ASE19_17185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1757088at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="156"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="257" mass="27259" checksum="7679A9D37F7C8C4F" modified="2016-01-20" version="1">MPYDVDFGAPGVHRGLPSTTLTLVLPVDDPLRVSWAGRPASMHAAWASLSGLHTEPAAIHHDGTQRGVQLALTLEGARVLLGRPAADLSGALTDLDEAVVPKGLRELPERLHAVPTWAARVALVDRALAVLAARAGDRGPQAEVAHALALLTAGTRVEAAAAEVGYSRRRLGTLVRAECGLTPKAYQRVARLERARGALGRRPLAEVAAVCGYADQAHLTREWTALAGCTPTTWLREEFPFVQDRDDDGGAGSGHEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ58</accession>
    <name>A0A0Q8UZ58_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA protecting protein DprA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19995</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DprA/Smf family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895927.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46151">
        <property type="protein sequence ID" value="KRC46151"/>
        <property type="gene ID" value="ASE19_19995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1881437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009294">
        <property type="term" value="P:DNA-mediated transformation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003488">
        <property type="entry name" value="DprA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43022">
        <property type="entry name" value="PTHR43022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02481">
        <property type="entry name" value="DNA_processg_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00732">
        <property type="entry name" value="dprA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="381" mass="40067" checksum="1FB7C280CCEF17A6" modified="2016-01-20" version="1">MSTGNRADEDRIARAAISLAIEPGDWRALGLTRELGPQQFLDVLRHQPEARPEFGAAAARLAETDAERVLERSASRGIRFVVPGDDEWPRQLDDLARAGVLHERGGVPVGLWARGPLRLDTVGESVAVVGARSSTTDGDQIGSDLSASIGAAGRPVISGAAFGIDYAAHRGALSADAPTVAVIACGVDRAYPVAHRQLLAHLAERHAVISEAPPGSAPFRIRFLARNRLIAGLSRGTLVVEAAIRSGALNTASWAERLNRVVMATPGLVSSAASEGTHQLIRRGSATLVTSAAEVLELVGVAGQDLAPEPRAPDRPRDRLSVRARQVLDAVPVATPVPADSIARVAGLGVEDVRRLLSGMAEADLVERLPTGWRLTAEGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ85</accession>
    <name>A0A0Q8UZ85_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_21930</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896251.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46482">
        <property type="protein sequence ID" value="KRC46482"/>
        <property type="gene ID" value="ASE19_21930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="527053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="25"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="62"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="101"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="141"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="166"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="207"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="247"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="298"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="355"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="384"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="418"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="448"/>
            <end position="470"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="475" mass="49086" checksum="F369EA0F496D0DB5" modified="2016-01-20" version="1">MEPTTSTATPTPEQSSTDGLAPGRLGVAAIVFFVMSAAAPLTVVVSGAPFAVLLGGVGGPGAMLAAGVVLMLFAAGFTAMSRHVTNAAAFYAYATQGLGRVVGSATAVMTTAGYVLLLLSFYGYAAFYGQSVIEDMAGVDVPWWALGLAIVAAIGFIGARNVEVGARFLAVLLTAEVALLAGVSIAVLVRGGPEPLSLAPFDPGNWLVGPGAAALFVLAFGSYIGFEGTAIYAEEARHPHRTIPRATYVAVAFLALFYAFSFWCFVTAFGVEGVIGAVASPDFADLPFVQAQDYLGTWAMKVMEVLIVTSFLACLISFQNAASRYLFSLGREGLLPGWLGHTDPRHSSPARASHVLMGLGIATVALCAVAGWDPLLDLGLLPYAAGVASIIAAQAICAVAVVAFFARDRRGFSVFRALIAPGLGALGLLTGLYLVVSHFDIASAQTGFANVILLTIPVLFFIGGGVRALMTAERD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V032</accession>
    <name>A0A0Q8V032_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17365</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893112.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48707">
        <property type="protein sequence ID" value="KRC48707"/>
        <property type="gene ID" value="ASE19_17365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1470522at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="175" mass="18365" checksum="4A7E498DA992C9D7" modified="2016-01-20" version="1">MQAQASGLQVSVHGHPNADTLLLWHPAVRTDPDGVAALASRIATRSSVRVVVPVWEDGRDLLRSVRYARESSVHPPDALSVVGYADAGIAALSLALHQRRLGIGLTRVTCVDGGADVLDPISGQPLPEPAAAPVETAVDVVEADGDWAATTVRAWQAAGWAADLVPAAQFSWRIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V042</accession>
    <name>A0A0Q8V042_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Isoprenyl transferase</fullName>
            <ecNumber evidence="2">2.5.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21580</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="2">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46423">
        <property type="protein sequence ID" value="KRC46423"/>
        <property type="gene ID" value="ASE19_21580"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004659">
        <property type="term" value="F:prenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00475">
        <property type="entry name" value="Cis_IPPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01139">
        <property type="entry name" value="ISPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001441">
        <property type="entry name" value="UPP_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036424">
        <property type="entry name" value="UPP_synth-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10291">
        <property type="entry name" value="PTHR10291"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01255">
        <property type="entry name" value="Prenyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64005">
        <property type="entry name" value="SSF64005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00055">
        <property type="entry name" value="uppS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="19"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="63"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="18"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="23"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="238" mass="26751" checksum="7CA677967C0F6980" modified="2016-01-20" version="1">MLRRMPDSLPKHVGVMLDGNRRWAKAVGRDTAHGHRAGAANIEPLLTWCDEVGIEVVTLWLLSTDNLNRPARELEPLLEIIVEAVDSLADQRRWRLHPVGALDLLPDAVAKRLKAAAEATADVDGMIVNVAVAYGGRREIADAVRSLLSEHAALGTPLELLAQQIDIEHIEEHLYTKGQPDPDLVIRTSGEQRLGGFLLWQSAKSEFYFCEAYWPDFRRVDFLRAIRAYAQRERRFGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V172</accession>
    <name>A0A0Q8V172_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">XRE family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_14940</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896455.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51388">
        <property type="protein sequence ID" value="KRC51388"/>
        <property type="gene ID" value="ASE19_14940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="817710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="3"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="126"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="126"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC51388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="25213" checksum="8154A0BC40EEDFD4" modified="2016-01-20" version="1">MTRVLVVEDEESYSDALAYLLRKEGFEVAIAADGNEALKEFDRNGADIVLLDLMLPGIPGTEVCRTIRQTSNVPVIMVSAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGLGDELLPDTLEAGPVRMDVERHVVTVDGVEQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVWGSDYVGDTKTLDVHVKRLRAKLEPEPSEPKYLVTVRGLGYKLEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V260</accession>
    <name>A0A0Q8V260_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15195</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896495.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51428">
        <property type="protein sequence ID" value="KRC51428"/>
        <property type="gene ID" value="ASE19_15195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1800547at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="365" mass="39006" checksum="597930F439170EDE" modified="2016-01-20" version="1">MEASSLDRMWSRSRLSLRGRIDRWRDKLWVVAQCSIAAGVAWFVAYDLLGHDLPFFAPIAAVLCLGTSYGQRLRRVVEVTLGVAIGVFMADVLVAGIGSGAWQLGLIVFLSMSMALLLDAGIMFVSQAAVQSIVVTLLLPGADGAFLRWTDAVVGGAVALVAAMVVPAAPLRRPREQAAVVARKIAELLRAASDVMVDGEVTPALELLADARTTDRLIRELQAAAEEGMSVVSSSPFRVRHREPLRRMVELVDPLDRALRSTRVLVRQVSIAAYRRRPVPSSYALVASDLADAAEAVAGELAADRLAVEARDALLSVGAATGQVERSEVLTAEAILAQLRAIVADLLMVTGMGQLEATDALPPPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2N6</accession>
    <name>A0A0Q8V2N6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Prokaryotic ubiquitin-like protein Pup</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4 5">Bacterial ubiquitin-like modifier</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">pup</name>
        <name evidence="7" type="ORF">ASE19_16580</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 5">Protein degradation; proteasomal Pup-dependent pathway.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Strongly interacts with the proteasome-associated ATPase ARC through a hydrophobic interface; the interacting region of Pup lies in its C-terminal half. There is one Pup binding site per ARC hexamer ring.</text>
    </comment>
    <comment type="domain">
        <text evidence="5">The N-terminal unstructured half of Pup provides a signal required to initiate unfolding and degradation by the proteasome but is not needed for pupylation, while the C-terminal helical half of Pup interacts with ARC to target proteins to the proteasome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the prokaryotic ubiquitin-like protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893686.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50217">
        <property type="protein sequence ID" value="KRC50217"/>
        <property type="gene ID" value="ASE19_16580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2059180at2"/>
    <dbReference type="UniPathway" id="UPA00997"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070628">
        <property type="term" value="F:proteasome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031386">
        <property type="term" value="F:protein tag"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019941">
        <property type="term" value="P:modification-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010498">
        <property type="term" value="P:proteasomal protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070490">
        <property type="term" value="P:protein pupylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02106">
        <property type="entry name" value="Pup"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008515">
        <property type="entry name" value="Ubiquitin-like_Pup"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05639">
        <property type="entry name" value="Pup"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03687">
        <property type="entry name" value="pupylate_cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1017">Isopeptide bond</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="ARC ATPase binding" evidence="5">
        <location>
            <begin position="22"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="cross-link" description="Isoglutamyl lysine isopeptide (Glu-Lys) (interchain with K-? in acceptor proteins)" evidence="5">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00032321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC50217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="65" mass="7289" checksum="864C3339161C4405" modified="2016-01-20" version="1">MAQEQKQPRKADETEETTDVATESDVAERKESLDEDVDAILDEIDDVLESNAEDFVKSFIQKGGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3W7</accession>
    <name>A0A0Q8V3W7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18825</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893359.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48957">
        <property type="protein sequence ID" value="KRC48957"/>
        <property type="gene ID" value="ASE19_18825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2231315at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="83" mass="9116" checksum="4883807EB0C81E57" modified="2016-01-20" version="1">MEQDEDHRAQLDRLRFVQAVAENATQVIALITRARTVDEAVVAVSRLLDVDEVTVMSGLAQFNLLALTGPATERRAELLAEPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5E9</accession>
    <name>A0A0Q8V5E9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyco_tran_28_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09545</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894606.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52668">
        <property type="protein sequence ID" value="KRC52668"/>
        <property type="gene ID" value="ASE19_09545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1485440at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016758">
        <property type="term" value="F:hexosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008194">
        <property type="term" value="F:UDP-glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03784">
        <property type="entry name" value="GT1_Gtf-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007235">
        <property type="entry name" value="Glyco_trans_28_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002213">
        <property type="entry name" value="UDP_glucos_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04101">
        <property type="entry name" value="Glyco_tran_28_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_tran_28_C" evidence="1">
        <location>
            <begin position="305"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="418" mass="44257" checksum="96A873EA8DB40CA9" modified="2016-01-20" version="1">MKRVDLVTPPMAGHLHPLLGIAARLADEPGLEVRVISTAAALAVTESAGLTGVALLTGADEVIETVVNPPYRIGSHPRKLLRQFRAAVELQRDFQAELAALWSAEPPDLVLADFTMGAVGPAADAIGVPWWTTHPSPCAIEGRSGPPSYLGGWRPGRTALGRARDAVGRRWVRRFKRVAPRLAGVDLTTVGLGPIHRPDGSEAIYSADRTFALTPASIEYPRDLPNAVRYVGPVLFTPPSTASEPALTPGHRHVLVTAGTHLPWHKQALLDAAGRAAAELPADVRVHVSLGGSDGAFTVPAGVTAHGYVSYERDLARFDAVVHHGGAGVLGHTLASGLPAVVWPVDYDQYDHAVRLVDAGVAVRVSRADGLADALRRVLDEPSYRSAAERIAATIAAEPAVEAVAREVRARLELPGSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5H0</accession>
    <name>A0A0Q8V5H0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Methionine ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_09470</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NlpA lipoprotein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894592.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52654">
        <property type="protein sequence ID" value="KRC52654"/>
        <property type="gene ID" value="ASE19_09470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1230456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004872">
        <property type="entry name" value="Lipoprotein_NlpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30429">
        <property type="entry name" value="PTHR30429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03180">
        <property type="entry name" value="Lipoprotein_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="17"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="34123" checksum="110CD0B4C2858163" modified="2016-01-20" version="1">MSDEIPLIEAPRSRRPLVIGVVVLVLAVIGAVAFLATRGDDTPRATGDGKSTDLSKDDPVKVVLGTVGASDPYWKTLEDAAADAGIELEIRDFDSYPLPNPALAEGELDANQFQHIVYLAEYNVANNDDLVPLGSTAIYPLGLYSQKYDDVADIPDGETVIVPDDDSNQARGLLVLQSAGLIQLKDGGSIFSTVADVDTAASRVKVKALQADLTATSLPDVAAAVINNDFVEDAGLKFEDAIAVDDPSDPKAIPYVNIFAVRAEDKDNPVLKKLVEVYQQTQAVLDGADEASGGTAQFVTISQADLEASLREVEAQIRDQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6D3</accession>
    <name>A0A0Q8V6D3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16350</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893644.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50176">
        <property type="protein sequence ID" value="KRC50176"/>
        <property type="gene ID" value="ASE19_16350"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="7"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="191" mass="20406" checksum="119C24F439450C94" modified="2016-01-20" version="1">MARRPDPAKRERIVHTTRELIRRRGVAGTTMLDVVAEAGASRGSLYHFFPGGRSEMVEDAVREAVEEYSTALLALADLEPVEAIPLIVEVWRAEAEASGYTAGCPVVAAALGGESEPVARELAGRAFADWTDAVEAWLVHVGVPEARAAGMATLLLAAVEGAVVVGLAQHSSEPMLRVADELVRIVEAERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6E4</accession>
    <name>A0A0Q8V6E4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_10610</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894787.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52854">
        <property type="protein sequence ID" value="KRC52854"/>
        <property type="gene ID" value="ASE19_10610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1035565at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018170">
        <property type="entry name" value="Aldo/ket_reductase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43827">
        <property type="entry name" value="PTHR43827"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000097">
        <property type="entry name" value="AKR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00798">
        <property type="entry name" value="ALDOKETO_REDUCTASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="4">
        <location>
            <begin position="20"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Lowers pKa of active site Tyr" evidence="3">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000097-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000097-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000097-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="284" mass="30758" checksum="1BA6F67BFA5B3B9F" modified="2016-01-20" version="1">MGVSTPRIDLNDQTSIPQFGLGVWQVAPAETERVVSDAFEIGYRHIDTAQMYGNEEGVGAAIAASGLAREDVYVTTKVNNNRHRPADAKDSARVSLEKLGLDRVDLLLIHWPLPTQYDGDFVSTWEALLELREEGLATSVGVSNFQPEHLDRVVAATGVVPVVNQVEVHPYFANEAARAATARHGAVVEAWSPLGQGGGELTDPAVTALAERYGRTPAQVLLRWALDRGDVVFPKSMSKARLAENFEVFDFALTADEVAALAALDRGESGRQGPNPDTFDWIPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6S2</accession>
    <name>A0A0Q8V6S2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Flavodoxin-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893773.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50304">
        <property type="protein sequence ID" value="KRC50304"/>
        <property type="gene ID" value="ASE19_17065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="796211at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50902">
        <property type="entry name" value="FLAVODOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin-like" evidence="1">
        <location>
            <begin position="8"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="182" mass="19529" checksum="0B55900DB08ED2C7" modified="2016-01-20" version="1">MSRAAPSALVVYESLFDNTAQVARAIVRGLHRAGFEAHSVPVTSIASTGPVDVDLLLLGAPTHAFSLSRPSSRADAVRHGAAPERAGTGAREWIRTIGPERFGTSRVAVFDTRAARVHRLPIAAGVTAARLLRRRGFHLLRNPVAFLVEGTRGPLVEGEEDRAERWGRMIGAACLDELDHAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V729</accession>
    <name>A0A0Q8V729_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cholesterol oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_18405</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893288.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48887">
        <property type="protein sequence ID" value="KRC48887"/>
        <property type="gene ID" value="ASE19_18405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="365211at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008152">
        <property type="term" value="P:metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="3">
        <location>
            <begin position="181"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="533" mass="57700" checksum="A3AAC478CB169E80" modified="2016-01-20" version="1">MSNTTHPSVDHDWVVIGSGFGGSVAALRLAEKGYRVAVFERGRSYADDELPTSASDSRRFVWAPATGLRGIMRNVLFRHVFSSTQTGVGGGSLVYGGVLFRPHEAFFRHPQWTALAPWREHLEPHYRTAERMLGASRTPWESVTSGLTREVADRFGGAFAPAPVAVFFGEPGVTVPDPYFGGEGPDRTGCTRCGQCMTGCRTGAANRLTKNYLWFAQRLGARILAEREVVDVTPLGAADGSDGYRVSTRRPGTRWRQGCTSVTTRGVVFAGGAVGTNALLADCKHRGSLPAVSDRLGHLVRTNSEAVLSVLLPEDIGTWRDVTASSRVVVDGDTQIEFLTYGPRGDFMRLMFTVLVGEGRPARRLLSWLVTVLRHPRRWLATLRSGWSARTLMMLVMQPRDNAIRFVASKRLLGRGYRLSTGRDDERPAPTFIREGHRVATWLAERTGGIAQGSVFEAFGNRPMTAHVLGGAVIGASPATGVVDAELKVYGYRNMVVCDAAALPANPGVNPALTITALAEHAMAQVPAAGLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7A4</accession>
    <name>A0A0Q8V7A4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NERD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53023">
        <property type="protein sequence ID" value="KRC53023"/>
        <property type="gene ID" value="ASE19_11565"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011528">
        <property type="entry name" value="NERD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08378">
        <property type="entry name" value="NERD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50965">
        <property type="entry name" value="NERD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NERD" evidence="1">
        <location>
            <begin position="55"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="214" mass="23146" checksum="57380F3C3C3ED07F" modified="2016-01-20" version="1">MALGAVCGSVIAGSFAIATVWPSLAWIAGVFGGAAFCFNLFARMSPPGWIENWQTGAWGEEATAAALAPLEAEGWMVTHDLSAHHGNIDHLVVGRGGVFLLDSKRLSGTVTVSDGRVTVQRFDNPALGYTHPGAGHAMALAKETHDRVLAASRLNVWVMPVMVLWADFPQGVTEDRCIFVHGDRLADWLRTRPSRISADRIEQVWEMVIRALAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7E0</accession>
    <name>A0A0Q8V7E0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Fumarylacetoacetase</fullName>
            <ecNumber evidence="4">3.7.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_11745</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid degradation; L-phenylalanine degradation; acetoacetate and fumarate from L-phenylalanine: step 6/6.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.7.1.2" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894985.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53055">
        <property type="protein sequence ID" value="KRC53055"/>
        <property type="gene ID" value="ASE19_11745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="819833at2"/>
    <dbReference type="UniPathway" id="UPA00139">
        <property type="reaction ID" value="UER00341"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004334">
        <property type="term" value="F:fumarylacetoacetase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006559">
        <property type="term" value="P:L-phenylalanine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006572">
        <property type="term" value="P:tyrosine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.850.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005959">
        <property type="entry name" value="Fumarylacetoacetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011234">
        <property type="entry name" value="Fumarylacetoacetase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036663">
        <property type="entry name" value="Fumarylacetoacetase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015377">
        <property type="entry name" value="Fumarylacetoacetase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036462">
        <property type="entry name" value="Fumarylacetoacetase_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43069">
        <property type="entry name" value="PTHR43069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01557">
        <property type="entry name" value="FAA_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09298">
        <property type="entry name" value="FAA_hydrolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56529">
        <property type="entry name" value="SSF56529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63433">
        <property type="entry name" value="SSF63433"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01266">
        <property type="entry name" value="fum_ac_acetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0585">Phenylalanine catabolism</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0828">Tyrosine catabolism</keyword>
    <feature type="domain" description="FAA_hydrolase_N" evidence="9">
        <location>
            <begin position="9"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="FAA_hydrolase" evidence="8">
        <location>
            <begin position="101"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF09298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="375" mass="40178" checksum="D34DB184677105C0" modified="2016-01-20" version="1">MNELFGLTNLPYGVYSVDGSPARCATRLGDHVVDLATLLGDPDDAVFARPTLNAFMAQGRQRWDEVRAAITAALADGLPADGVHAIDDVTLHLPFEVADYVDFYASEHHASNLGRLFRPDNPDPLLPNWKHLPVSYTGRAGSVVVSGTDVVRPCGQRKAPDAEVPTFGPSTRLDIEAELGFVVGVGNEMGTPIAGADADQHLFGVVLFNDWSARDIQAWEYVPLGPHLGKSFASTISPWVVPLAALDAARVDTPTQEPAVLPYLALDRPWGLDIDLEVEWNGTVVSRPPYSSLYWSPAQMLAHLTVNGAPTRTGDLFASGTISGPAKDQVGSFIERGEGFLEDGDEVVLRATAPGADGTRIGFGECRGRITKARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7G9</accession>
    <name>A0A0Q8V7G9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12135</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53124">
        <property type="protein sequence ID" value="KRC53124"/>
        <property type="gene ID" value="ASE19_12135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="347" mass="38335" checksum="6E7F96D9991A4F78" modified="2016-01-20" version="1">MPNQRGLPVWKHVPVAGYQPEDRELFEREATGLYEQALAEGGLAADDARLADGAPSRRGFDLLVELGLLQLDSARTTWRPLEPSNAQSRVVTPLGNEGARLIEESARWANAFAGLNQSWRRSPVASESGPFLYLHGEAGRSYLTALVSDAQEELLTAQPQAHRNAKTVQEAAVRDVAALKRGLAMRTLYQHSARRHPATHRYVAEVTEHGADVRTLDEFFNRLIVVDRRVALIPAADDQATAVVVREPAIVAYLVDVFERAFARGRPFATSEQRVMKEIASEQRSMTIRMLIEGHADAVSAKRLGVSPRTYAGYVAELKDEYEAETRFQLGYTMGQLGIAGQESDDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7T0</accession>
    <name>A0A0Q8V7T0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14155</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897026.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53477">
        <property type="protein sequence ID" value="KRC53477"/>
        <property type="gene ID" value="ASE19_14155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2089619at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="15"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="205" mass="23052" checksum="A25AA56F6F5D3347" modified="2016-01-20" version="1">MTTATARRTPADKHDERRRALADSALRTLGELGYARASLREIANNSEFSHGVVHYYFHDKLELIVYCVRQYKATCVHRYDGVVDSATTADGLVEGFADKLVETILDEAPMHRLWYDLRSQSMFEESLREAVLQIDKTLEDMIWRVISTYAELAGRAPAMAPSVAYGLLDGLFQQALLGHLCGRKGVLDELRTQVHELMPVLLSPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7T7</accession>
    <name>A0A0Q8V7T7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13840</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897081.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53422">
        <property type="protein sequence ID" value="KRC53422"/>
        <property type="gene ID" value="ASE19_13840"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="131" mass="13904" checksum="795311223C870F05" modified="2016-01-20" version="1">MAGYLLAALIADVLFAAGLYLPVLADETVTWQDALFWAFLLAFFVTLYAVPFAALGLLAVHVACVRVPAQWVHVLAAGVAGLLPMAVSSVMTQQWEVVPFAGVPVATALGRWAVVPLVRQRRDSAGLRATG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V845</accession>
    <name>A0A0Q8V845_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ATP-dependent RNA helicase DeaD</fullName>
            <ecNumber evidence="6">3.6.4.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Cold-shock DEAD box protein A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">deaD</name>
        <name evidence="6" type="synonym">csdA</name>
        <name evidence="13" type="ORF">ASE19_14710</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.13"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the DEAD box helicase family. DeaD/CsdA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.13" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896929.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53573">
        <property type="protein sequence ID" value="KRC53573"/>
        <property type="gene ID" value="ASE19_14710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="626183at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070417">
        <property type="term" value="P:cellular response to cold"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000027">
        <property type="term" value="P:ribosomal large subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006401">
        <property type="term" value="P:RNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd12499">
        <property type="entry name" value="RRM_EcCsdA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00964">
        <property type="entry name" value="DEAD_helicase_DeaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034415">
        <property type="entry name" value="CsdA_RRM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005580">
        <property type="entry name" value="DbpA/CsdA_RNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028618">
        <property type="entry name" value="DEAD_helicase_DeaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000629">
        <property type="entry name" value="RNA-helicase_DEAD-box_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014014">
        <property type="entry name" value="RNA_helicase_DEAD_Q_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03880">
        <property type="entry name" value="DbpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00039">
        <property type="entry name" value="DEAD_ATP_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51195">
        <property type="entry name" value="Q_MOTIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6 8" id="KW-0347">Helicase</keyword>
    <keyword evidence="2 6 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 6" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="Q_MOTIF" evidence="12">
        <location>
            <begin position="10"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="10">
        <location>
            <begin position="41"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="11">
        <location>
            <begin position="236"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="440"/>
            <end position="483"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Q motif" evidence="7">
        <location>
            <begin position="10"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="440"/>
            <end position="476"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC53573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="569" mass="63137" checksum="C5149B9E33E438F2" modified="2016-01-20" version="1">MSETAETETTTFADLGLGERILKSLKDVGYESPSAIQAQTIPHLLAGRDVMGLAQTGTGKTAAFALPILDQLDTSQKTPQALVLAPTRELALQVCEAFEKYAANMRGVSVLPVYGGQGYGVQLSALRRGVHIVVGTPGRIMDHLEKGTLDLTELRFLVLDEADEMLNMGFAEDVETILADTPSDKQVALFSATMPKQIKTLSQKYLNDPVSIAIERKTRTAENIRQRYLISSYPQKVDALTRILEVENFEGMIVFVRTKSETELLAEKLRARGYSAAAISGDVQQTQRERTVNQLKAGKLDILVATDVAARGLDVERISHVVNYDIPTDTEAYVHRIGRTGRAGRSGDAISFITPRERYLLKHIEKATRSTLEQMQLPSVDAVNETRLARFDDLITAALESPQIEFFRDVVGHYIREHDVPEADVAAALAIALQGDTPLLLEEEPERRPHRDYDDRDDRRGGDRGDRGDRGPRDRAPRGGGNFQAYKIQVGKRHRVEPRQIVGALANEGGLDRRDFGKITIRPDYSVVELPANLPDGALERLKNTRISGKLIELQKDYGPPNRSRKPRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V872</accession>
    <name>A0A0Q8V872_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 11">Replicative DNA helicase</fullName>
            <ecNumber evidence="3 11">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_13800</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the helicase family. DnaB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3 11"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53414">
        <property type="protein sequence ID" value="KRC53414"/>
        <property type="gene ID" value="ASE19_13800"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006269">
        <property type="term" value="P:DNA replication, synthesis of RNA primer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00984">
        <property type="entry name" value="DnaB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036185">
        <property type="entry name" value="DNA_heli_DnaB-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007692">
        <property type="entry name" value="DNA_helicase_DnaB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007694">
        <property type="entry name" value="DNA_helicase_DnaB-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007693">
        <property type="entry name" value="DNA_helicase_DnaB-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016136">
        <property type="entry name" value="DNA_helicase_N/primase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00772">
        <property type="entry name" value="DnaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03796">
        <property type="entry name" value="DnaB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48024">
        <property type="entry name" value="SSF48024"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00665">
        <property type="entry name" value="DnaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51199">
        <property type="entry name" value="SF4_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 11" id="KW-0235">DNA replication</keyword>
    <keyword evidence="10 11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8 11 14" id="KW-0347">Helicase</keyword>
    <keyword evidence="7 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-0639">Primosome</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SF4 helicase" evidence="13">
        <location>
            <begin position="209"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU362085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC53414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="472" mass="51920" checksum="A63CA595C3911E4C" modified="2016-01-20" version="1">MSLTDDAPSWTAEPPEQWGDGPAAYAPGEAPSGGAGGRMPPQDLAAEQSVLGAMLISKDAIADVVEVIRGVDYYRPAHEEIHEAILDLFGRGEPADMVTVAGELQRRGQLQKIGGASYLHTLAANVPIAANAGFYAEIVYEKAILRRLVDAGTKIVQISYAGEGEVDGIVNEAQSEIYKVTDRNKSEDYAPLSDIMDSVLDEIEAIENREQGIYGVPTGFADFDDLTNGFHKGQMIVVAARPAMGKSTLALDFCRAAAIHNNLTAAFFSLEMTRAEIVMRLLSAEARIPLNHIRNGKMGTEEWDRLARHVAKVSAAPMFIDDSPNMTMTEIRAKARRLKQKHDLRLMVIDYLQLMSSGKKVESRQLEVSEFSRQIKLLAKELEIPVIALSQLNRGPEQRADKRPAVSDLRESGSIEQDADMVVLLHRDDVYEKESTRPGEADLIVAKHRNGATRDIVVAFQGHYSRFVDMAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8G8</accession>
    <name>A0A0Q8V8G8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytidine deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14255</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897007.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53496">
        <property type="protein sequence ID" value="KRC53496"/>
        <property type="gene ID" value="ASE19_14255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1890883at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="16831" checksum="C347EF5341482DCC" modified="2016-01-20" version="1">MAIDDTDRRHLARCVELAEQAVEVGDEPFGSLLVGPDGTVLMEDHNHVSGGDGTRHPELAIALWAAAHLPVASRAAHTVYTSGEHCAMCSAAHAWAGLGRIVFATSTPQLVQWMGELGVAPSPVTALRITEVAPGVPVDGPVEEYADAVRALHVRHHAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8J4</accession>
    <name>A0A0Q8V8J4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_14185</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897020.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53483">
        <property type="protein sequence ID" value="KRC53483"/>
        <property type="gene ID" value="ASE19_14185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1927576at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006324">
        <property type="entry name" value="LeuE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="45"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="78"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="126"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="159"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="193"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="23045" checksum="05DB75C967943CF2" modified="2016-01-20" version="1">MLGITDLSTYLVGLVLIILLPGPNSLYVLSVAARRGVRDGYRAAAGVWTGDAVLMTLSAAGVASLLQANDVAFSIVKWVGAGYLGYLAFTMLRGALLMWRARARAVQAVKEGAPTPVPNERPYRRALVISLLNPKAILFFVAFFVQFVDPAYDKPALSFLALGALAQVASVAYLSALIFGGTRLADAFRRRRALSAAGTSAVGAIFLGFAVKLSLAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9H8</accession>
    <name>A0A0Q8V9H8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07940</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53998">
        <property type="protein sequence ID" value="KRC53998"/>
        <property type="gene ID" value="ASE19_07940"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="124" mass="13299" checksum="1DDBC559159811CE" modified="2016-01-20" version="1">MKMAGPESGYDLGVDLSRLWWAGKYHIGETVVGHMEAAANNVPSEAGDLYRSGGWGAPDGANGPAAAIESYASKLHTMLVTNARNFREVGEALVLVANDYAATDQAARDELNNRKKQIQQVEGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9X4</accession>
    <name>A0A0Q8V9X4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07415</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895335.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53903">
        <property type="protein sequence ID" value="KRC53903"/>
        <property type="gene ID" value="ASE19_07415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1730305at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="299" mass="33157" checksum="828371879542D0FF" modified="2016-01-20" version="1">MTHCPACAGTRVHTAVASRATGRRISTCRDCGVRYWSDHMAEERMDAIVIQKEWSADDYGDWVDIKREGAGPGAWREALGWIGEALGERGDRRPLIYDIGAGDGEFLSVARDEFGYDVTGNEIVAGAVELARERHGVRLDLGGLEAHGHVEIADAVTLWCVLAHVNEGDELLSDIHTMLRPDGVLFLQTPHWTAADQAAHLVKRATRGRASQVPDRRIAQHHWILHTRRSITAQLERLGFVDVVAEPRLRYTLTSEAYVLSLNPPSWSVRPATKMLDKLVSSPVAPRIVLDVRARKGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAB3</accession>
    <name>A0A0Q8VAB3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_15270</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896507.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51441">
        <property type="protein sequence ID" value="KRC51441"/>
        <property type="gene ID" value="ASE19_15270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013107">
        <property type="entry name" value="Acyl-CoA_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08028">
        <property type="entry name" value="Acyl-CoA_dh_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="2">
        <location>
            <begin position="27"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_2" evidence="3">
        <location>
            <begin position="254"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC51441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="45104" checksum="DD1BB3032025350E" modified="2016-01-20" version="1">MTADLTTPTGAAAGGWTDRPTTPEGWLERARQVATTLAADAVERDRALAVPTAEVRLLKESGLVTLLGPVEHGGGGQDWTTALRVIRAVSAGDGSIGQLLGYHLLWFWAARLVGTPEQIAAVEEQATREQWFFGGAVNPRDADLVISDEGEEIVFRGEKSFSTGGRISDVTVLEGVLEGTEQHVFAIVPTDQPAIRFKGDWDALGQRLTESGGVVIDGVRVPWASAAGYVRTDAGWEFRPRVYNTLNVPLIQIIFANIYLGIAEGALATAATYTREKTRPWPYTPDLKETATQEFHILETYGDLRSKLWAAEALAERAATLIEAINAHADTVTPEERGEAEVVIAAAKQVAIDTGLEIGTRVFDVTGARATASSVGLDIFWRNIRTHSLHDPVAHKRAEVGRYALLGELPEPTWYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAP5</accession>
    <name>A0A0Q8VAP5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Hydroxyacid-oxoacid transhydrogenase</fullName>
            <ecNumber evidence="5">1.1.99.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_09670</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(S)-3-hydroxybutanoate + 2-oxoglutarate = (R)-2-hydroxyglutarate + acetoacetate</text>
            <dbReference type="Rhea" id="RHEA:23048"/>
            <dbReference type="ChEBI" id="CHEBI:11047"/>
            <dbReference type="ChEBI" id="CHEBI:13705"/>
            <dbReference type="ChEBI" id="CHEBI:15801"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="EC" id="1.1.99.24"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2-oxoglutarate + 4-hydroxybutanoate = (R)-2-hydroxyglutarate + succinate semialdehyde</text>
            <dbReference type="Rhea" id="RHEA:24734"/>
            <dbReference type="ChEBI" id="CHEBI:15801"/>
            <dbReference type="ChEBI" id="CHEBI:16724"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:57706"/>
            <dbReference type="EC" id="1.1.99.24"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the iron-containing alcohol dehydrogenase family. Hydroxyacid-oxoacid transhydrogenase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.99.24" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894629.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52691">
        <property type="protein sequence ID" value="KRC52691"/>
        <property type="gene ID" value="ASE19_09670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1456634at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004022">
        <property type="term" value="F:alcohol dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047988">
        <property type="term" value="F:hydroxyacid-oxoacid transhydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08190">
        <property type="entry name" value="HOT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001670">
        <property type="entry name" value="ADH_Fe/GldA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039697">
        <property type="entry name" value="Alcohol_dehydrogenase_Fe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042157">
        <property type="entry name" value="HOT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11496">
        <property type="entry name" value="PTHR11496"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00465">
        <property type="entry name" value="Fe-ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0809">Transit peptide</keyword>
    <feature type="domain" description="Fe-ADH" evidence="9">
        <location>
            <begin position="20"/>
            <end position="420"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC52691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="431" mass="44783" checksum="063207BA6FB5300E" modified="2016-01-20" version="1">MPYGDRVSLETVFTYAAPALKFGRGASREIGYDVSGWGARRVLLVTDAGVAAAGHADDVADSLRRSGLEVVVFDGARVEPTDVSLEEAVAFARSEGPFDAVVAVGGGSSIDTAKAVALLVTNPGELMDYINAPVGRARAPQNPVLPLVAVPTTTGTGSESTTICVMDVLSLKVKTGISHAALRPRLAVVDPALSATQPAGVTAAAGMDILCHALESYTARWYADFDAKTPEQRVPYCGSNPIADLWSEKALGLLSTAFRAAVHRDPADPAGAAAADEMALAATFAGLGFGNAGVHIPHANAYPIAGRVRDFTPADYPQDEPMVPHGMAVSLTAPEAFRFTYDAAPDRHLRAARLLDPTAGGTGPDVLPDVLARLMQDIGIPNGLGAVGYGEADVDDLVDGALKQQRLLATAPKEVTGEDLAGIIDASLEHW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAS0</accession>
    <name>A0A0Q8VAS0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycerol-3-phosphate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08005</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54203">
        <property type="protein sequence ID" value="KRC54203"/>
        <property type="gene ID" value="ASE19_08005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018931">
        <property type="entry name" value="DUF2520"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019665">
        <property type="entry name" value="OxRdtase/DH_put_Rossmann_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037108">
        <property type="entry name" value="TM1727-like_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10728">
        <property type="entry name" value="DUF2520"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10727">
        <property type="entry name" value="Rossmann-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rossmann-like" evidence="1">
        <location>
            <begin position="6"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2520" evidence="2">
        <location>
            <begin position="147"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="320" mass="32855" checksum="0E6A56EB49D0035E" modified="2016-01-20" version="1">MTPLATPQTDASGRRVGVVGAGRVGAVLAAGLRAAGHPVVAAAGESDASRRRAAELLPGVPLHKPSDVARAADLLLLTVPDDMLPNVVRVLSDSGAIREGQVVAHTSGRHGLAVLAPAAAVGARIIALHPAMTFTGTAVDIERLHGCVFGLTAGPAEHDLAEQLVADLGGRANWVPEQMRTLYHAGLAHGANHLVTLVSEAMGLLAAAGVDDPAGTLRPLLDAALDNALEHGDAALTGPIVRGDVQTVAAHLKDISTNAPDTLPSYVAMAWATLDRSVTDGRLLPIQAQKIATVLSAYGDRRALPSRLGRLGRLGRTENA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBW1</accession>
    <name>A0A0Q8VBW1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04580</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894325.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54757">
        <property type="protein sequence ID" value="KRC54757"/>
        <property type="gene ID" value="ASE19_04580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="840719at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="158"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="214"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="242"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="266"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="296"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="329"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="354"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="379"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="410"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="453"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="485"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="508"/>
            <end position="527"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="534"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="558"/>
            <end position="577"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="584"/>
            <end position="602"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="608"/>
            <end position="627"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="634"/>
            <end position="652"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="658"/>
            <end position="675"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="682"/>
            <end position="699"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="736"/>
            <end position="753"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="759"/>
            <end position="778"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="809"/>
            <end position="826"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="844" mass="84045" checksum="99460B3515E4915C" modified="2016-01-20" version="1">MRYADPSLCPDCRSALPSGISVCPSCDLLVRHPLAVHLFRTLQRADALVGELRTASDAFHDHPAAASAASTSATATATLGGPLVAPGVPAAPTQAVPAGPTPPLPPYPGTAAPMPERGGVAFASVPKILLGLGAFCLLVAAVIFLAVSWSALGVGGRTAVLGGLTLTAGASALLLHRSGLRVAGESLIVVALGMLALDVFGAGAAGWLGGNGDVTTLVAGLTVAVAASLTALVRVGGQPRLVAPQVIAGIGLLVAYTGAIDVTDHRLVAGHLVTATAIGAVLLGRTTGLVPLQWSVTVAGAVAWLGSASVATSSALLHPDLHQLWVDGSGWSLLVTAAAMLVPGLVVRDQRLALAGASCAAMVVTLVLTLPSVDTDATTFGLVALGTTATWVAALAVLPRVARPVAVAPSALGSLVLGGLALTTAAVAFARWADASTAFARTLDVTIGGTDPVTEPLLLVPSLLVPLAFLALVASNRSRAALLEWAEAGGVLAGLGVAATLTSYDVQLAAPVAALILTAALSTAVSLRSTGARASGHAVAGLAVAGGATLAAVPSAPIAALVGAVGTVVALALATLGRTDVARVTGRLTAPPLLGLAVAALVHAVDGGAAWVAVPVLLAVGVLAVVLPRLELEVAAVLVAAFAFPVSLGTASDPGGLTALWLTVAGFLACASALVNESRRHLVWLGGALLVLASWVRLADLDVHAPEPYTLPLAVVLVALGLAWMHRSPDTGTTEALLPGLLLGTVPSLLWVAGDPVSLRALVLGAACLALTVAGAALRWSAPLVIGASVGATIVLRELGPYAGDFPKWVWIGLAGALLTVVGITWERRLLEVRSAVGLLGRLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC23</accession>
    <name>A0A0Q8VC23_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13645</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897118.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53385">
        <property type="protein sequence ID" value="KRC53385"/>
        <property type="gene ID" value="ASE19_13645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="816627at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359891" evidence="1">
        <location>
            <begin position="32"/>
            <end position="744"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="744" mass="78775" checksum="3FAFEC3680954F50" modified="2016-01-20" version="1">MHSMHRKNRVVRGVAVGLLSLGLLTAGTVTAAADDTSDPGGLPLPGLDSLGGGGLPLPGLDSLGEGGLPLPGLDALPGLDVLDGGGLGGGLGGDGALGLLGDLPISAEWLVNTLSNATSLGKVKNNTVSGAIARRDKATAEWKAAQAKYEAGKGPQPNPLAKPEYSVVWSAKQNVADINADVISKFVQNATINPQGLLDLLNPQFLPGLDGFQVIDGRAKNLDGSDNPDYARVVNFVQLPLPWGLENESHHMQYEWNDGDPILAGGLFTGTTHVLDASDIPNLKLLNEIPVTSTPGGSIADAYENGPGGRFYLTLMGGPLANFGGSPGEVVTFKPHPTKGVVVESESPAGGALGANPNGIKEPCTLREARPLGTCANPHGIQFRNDLGVGITSDYAEPREIVLDPVKTIDKYAFRPTVRTWNNEGANAGKPKLIGVAHVPNGPTEPAQRAHEQYGIMEAAKTWPNADRYQKGLSSKGAFFGSMCGGGVFFVPDLTKAKGDFSDQIVQVWNDGLSIVQTPDGRKYDEPGGCAGGAWHQVAPNNRILFRAVQGRNPGSDNYFDQGSAKIVYDIDISPLIESAADGKVDCDLSRGIHNGTLDLTGIRLWNKLAQGETVADCPRFISALPVADVTTGGPHWGALDNHTVDQWGTPWRLQFTDYFVSRTGVDGDHRLYSVNITPSGKLSYDDSFRDEKTGGLGVNFNRRNWPGNPDAGFYKPHSELWVTPPGISTPNASGKDLSYRDFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC89</accession>
    <name>A0A0Q8VC89_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Crotonyl-CoA reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04375</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894357.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54724">
        <property type="protein sequence ID" value="KRC54724"/>
        <property type="gene ID" value="ASE19_04375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="884088at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043880">
        <property type="term" value="F:crotonyl-CoA reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08246">
        <property type="entry name" value="crotonyl_coA_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010085">
        <property type="entry name" value="Crot_CoA_red"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002364">
        <property type="entry name" value="Quin_OxRdtase/zeta-crystal_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01751">
        <property type="entry name" value="crot-CoA-red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01162">
        <property type="entry name" value="QOR_ZETA_CRYSTAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="44"/>
            <end position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="425" mass="45371" checksum="1B0A788D662A12C4" modified="2016-01-20" version="1">MVADDQRIPVSTPGASAVDIGTLPPLGVVPEKMSAQVVRQDRYGDPASAFVPEVVQTPRIGPGEVLVAVMAAGVNYNNVWAARGYPVDQVATRQRRGEPEDFHIGGSDASGIVYAVGEGVANWAVGDEVVVHPGVWDADDPWIAAGRDQMIAPSAKIWGYDTNYGSFGQFARVQSHQLMPKADHLSWAEAAAPTLVGTTAYRMLLGWEGNTVRDGDLVLVWGGSGGLGTQASQLVKAAGGRAIAVVSGDDRGAYAMKYGAIGYLDRRKYSHWGVPPLVDDKDGQKTWTAGARQFGKDFWEIAGGREEPAIVFEHPGAATVPTSIFLCQPGGMVVICAGTTGFDAMVDLRYHWTRQKRLQGSHGTNDAQAYAYNDLVRAEKIDPVLGRVLSFADVARSHAEMGRGEEVFGNTVHLVGADTPEAGRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCD1</accession>
    <name>A0A0Q8VCD1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05020</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894253.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54828">
        <property type="protein sequence ID" value="KRC54828"/>
        <property type="gene ID" value="ASE19_05020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1064289at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="227"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="260"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="4"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="333" mass="36884" checksum="3B8181C5767E5A4F" modified="2016-01-20" version="1">MMLSVVVPCYNEEAVVDSLVTVLKDVLPRVATSFEVLLVDDGSRDRTLERLREINADDPRFRYLALSRNFGKESAMLAGLSQARGDAVAILDADLQHPPELLAQMLPLLADGKDQVIARRTRTGDKPVRTMFSKAYYRIFNRLIDVTLEDGAGDFRVLSRRAVRALLAVGEYNRFSKGLFSWIGFDTAVVDYENVARAGGETKWSMRSLVNYGIDGVVSFNSRPLRLAIYFGAFISLVAFLYALWVLGDAIINGNQAPGYVTTICTVVGFGGVQMILLGVIGEYLGRIYLETKNRPHFLLKESSEGPDLTPVAVLLGQEHEQFITPPANEDRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCI0</accession>
    <name>A0A0Q8VCI0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TrwC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53363">
        <property type="protein sequence ID" value="KRC53363"/>
        <property type="gene ID" value="ASE19_13510"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014862">
        <property type="entry name" value="TrwC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08751">
        <property type="entry name" value="TrwC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TrwC" evidence="1">
        <location>
            <begin position="21"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="318" mass="34879" checksum="DC391F2A4264F91E" modified="2016-01-20" version="1">MTGGDSNIMHGGVKFYRGSAAAARSYVEADHSRADDYYLAEGSGVAEHYAVTVGVDGVRTERCPDLDGASYERWVAGYDVTTGQAKGRLRDDDHTLRFVEVVVNGPQTWSLAAALHADIADAYEDAQTRAAGEIISWVAQHATTRVGPRGRQVQVPVEKIEAAIVRHYTSRAGDPHRHLHLQINARVFARGGWRGIHSVGVVDSIEALNGIGHAAVMCDPRFRAALAARGYTLDDAGEVNELTAYAGRFSQRASQIGRNIDRYEAEWRADNPGAEPGPKLCRTWDRRSWADARPDKVVPADGADLVRRWHDELHDLGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCM0</accession>
    <name>A0A0Q8VCM0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Isoleucine--tRNA ligase</fullName>
            <ecNumber evidence="10">6.1.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Isoleucyl-tRNA synthetase</fullName>
            <shortName evidence="10">IleRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10 15" type="primary">ileS</name>
        <name evidence="15" type="ORF">ASE19_04740</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP + L-isoleucine + tRNA(Ile) = AMP + diphosphate + L-isoleucyl-tRNA(Ile)</text>
            <dbReference type="Rhea" id="RHEA:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:9666"/>
            <dbReference type="Rhea" id="RHEA-COMP:9695"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58045"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78528"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="10">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="10">IleRS has two distinct active sites: one for aminoacylation and one for editing. The misactivated valine is translocated from the active site to the editing site, which sterically excludes the correctly activated isoleucine. The single editing site contains two valyl binding pockets, one specific for each substrate (Val-AMP or Val-tRNA(Ile)).</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.5" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894298.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54783">
        <property type="protein sequence ID" value="KRC54783"/>
        <property type="gene ID" value="ASE19_04740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="32262at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004822">
        <property type="term" value="F:isoleucine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006428">
        <property type="term" value="P:isoleucyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07961">
        <property type="entry name" value="Anticodon_Ia_Ile_ABEc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.740.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02003">
        <property type="entry name" value="Ile_tRNA_synth_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033709">
        <property type="entry name" value="Anticodon_Ile_ABEc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002301">
        <property type="entry name" value="Ile-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023586">
        <property type="entry name" value="Ile-tRNA-ligase_type2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42780">
        <property type="entry name" value="PTHR42780"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00984">
        <property type="entry name" value="TRNASYNTHILE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="SSF50677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00392">
        <property type="entry name" value="ileS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10 11" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 10 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 10 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 10 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 10 11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="tRNA-synt_1" evidence="13">
        <location>
            <begin position="33"/>
            <end position="674"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_1" evidence="14">
        <location>
            <begin position="725"/>
            <end position="862"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="10">
        <location>
            <begin position="67"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="10">
        <location>
            <begin position="640"/>
            <end position="644"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="643"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU363035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF08264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC54783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1078" mass="119401" checksum="41FD73B4A2A7F05D" modified="2016-01-20" version="1">MTYPKVSTDPTTDSRPAAAVPGSPRFPEIEERILAYWAEDDTFRASVEQRDPGAGGENEFVFYDGPPFANGLPHYGHLLTGYVKDIVPRYQTMRGKRVERRFGWDTHGLPAELEAMRLNGIKTTDEIVEMGIDKFNDACRASVLKYTGEWRDYVTRQARWVDFDNDYKTMNPEFMESVLWAFKSLFDKGLVYEGFRVLPYCWNDETPLSNHELRMDDDVYQMRQDPAVTVGFEITGANERAGDLVGAKLLIWTTTPWTLPSNLAVMVGSDIDYVVAEHEGQRLVLAEARLAAYARELGDEPTIAWRGKGSDLLGLTYAPPFSYYAGHENAFRVVAADEAVTTTDGSGLVHSAGAFGEVDKEVTDREGIEPVMPVGKDGRFTHPVAEYAGMLVFDANLQIIDDLKNTGGAVTPGTVLFRRETYDHSYPHCWRCREPLIYKGVSSWFVEVTAIKQRMAELNQDIRWVPEHIKDGQFGKWVDNARDWSITRNRFWGSPVPVWKSDSEEYPRIDVYGSFEEIERDFGRLPLNAQGLPDLHRPWVDELTRPNPDDPTGQSTMRRVSDVLDVWFDSGSMSFGQVHYPFENAEWFEQHFPADFIVEYIGQTRGWFYTLHILATALFDKPAFSSCISHGIVLGSDGNKMSKSLRNYPDVAEVFDRDGADAMRWFLMASPILRGGNLVVTEQGIRDAVRQVMIPLWNTWYFFSLYANAEQYDAAGRTDSTDPLDRYLLAKTRQYVEKLTSELDDYAIADACETTRTFLDVLTNWYVRRSRERFWEGKPEAFETLAAVLDVVCRAIAPLLPLTTEEIWRGLTGGRSVHLADWPDVSALPADDSLVAAMDQVREVCSSTSALRKAAKLRNRLPLAGLTVVVADPAALEPFSAIVADELNVKAVRLLAADSDEAAGYGVEQKLTVNARAAGPRLGKDVQLAIKGSKSGDWSVSADGVVTAGGLALVEGEYALETVVGDAAEGVATAMLPSGGFVVLDTVVTPELAEEGVARDLVRAVQQLRRDSGLEVTDRIELVVGGTPAVLAAARAHEGLIAGETLATSYSVGEQTPSGATEVVVGDGEKAALLLAIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCN5</accession>
    <name>A0A0Q8VCN5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">APH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05250</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894213.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54868">
        <property type="protein sequence ID" value="KRC54868"/>
        <property type="gene ID" value="ASE19_05250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1457558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="70"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="346" mass="36834" checksum="1E3C7A37A3ED0DDB" modified="2016-01-20" version="1">MSAPLVAEVDELTPAWLSSALGRRVDTVTARPVGTGQIGTCFRLTLTGDPHLPATVLAKLPAADPAARALLANPYRTELRFYREILPTLAVRAPQPYYADMAAEGGDFVLLLEDLAPAEQGDQIAGCTVDQVRDAVVNLAGLHGPRWCDPTLLAIEGLALNGPDDAALMAELFGPAADLFLSNLAGLLAPGDEATVRAVPDVIERWALARAERFGLVHGDYRLDNLLFPPGGGPGVVAVDWQTLSLALPARDLAYAIATSLDPDARRAAERELVAAYHAALVGHGVAAYSLEECWDDYRFAQLQVPLVAVFGQAYGARTERGDRMFAVMTARSCAAVRDLGTLDLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCY6</accession>
    <name>A0A0Q8VCY6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06050</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894070.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55004">
        <property type="protein sequence ID" value="KRC55004"/>
        <property type="gene ID" value="ASE19_06050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2090281at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="108" mass="11277" checksum="A03465B9A8E11B66" modified="2016-01-20" version="1">MGVTLDVPPGVLAQAGKAWDDAHDKLTGAGTRLGNIELANLSTTVESAVTTFLEVWSGETAVLSRQASSHSAAFADLDADLGLTDVAEAERLRSLLPFAFHDAPIEGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD51</accession>
    <name>A0A0Q8VD51_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05785</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894117.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54959">
        <property type="protein sequence ID" value="KRC54959"/>
        <property type="gene ID" value="ASE19_05785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2056482at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="95" mass="10463" checksum="0DD37AE8C6D51A63" modified="2016-01-20" version="1">MADLQINLDHLDQLFKDLLHTSIAFGEIEQVSKRTAAAVGHPALQHKVEDFSGKWDDRRKTIIESLDALWGAASHIGKTFTKVDGLIAAELPGDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDW4</accession>
    <name>A0A0Q8VDW4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Exopolyphosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10315</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894734.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52801">
        <property type="protein sequence ID" value="KRC52801"/>
        <property type="gene ID" value="ASE19_10315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1862004at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003695">
        <property type="entry name" value="Ppx_GppA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02541">
        <property type="entry name" value="Ppx-GppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ppx-GppA" evidence="1">
        <location>
            <begin position="26"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="312" mass="33693" checksum="FC074271C59DABFF" modified="2016-01-20" version="1">MRLGVLDIGSNTGHLLVVDAHGGAAPLPAFSYKEPLRLAEHLDDAGDVSPTGIDALTAFTAQALRVAEEKGCEEMLPFATSAVRDAGNSEEVLAHVERETGVRIEVLPGEDEARLTFLAVRRWFGWSAGRLAVFDIGGGSLEIAAGSDERPDVAWSLPLGAARLARADFAERPDEERLRQIRRRIRADIARDAGHLLRAGTTHRAAATSKTFRSLARICGAAPSGEGQLVPRSLPLAELRQWIPKLVVMTPEELAELPGVSPSRTHQIVPGALVAEACMDIFDLSELEVCPWALREGVILERLDKISVTDEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEY9</accession>
    <name>A0A0Q8VEY9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RNA polymerase subunit sigma-24</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_12275</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895076.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53149">
        <property type="protein sequence ID" value="KRC53149"/>
        <property type="gene ID" value="ASE19_12275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="24"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="136"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="181" mass="20171" checksum="A138B2445F29DA21" modified="2016-01-20" version="1">MEELDLDEVALRAAAGDRDALEDLLAAIQPRVRRICGRMLLHPQDAEEATQDALLLVATKIGTFAGRSKFTTWLHAVASNSARSTYRTLKRRSAEHAVDEMPVYADPRTTSVIAGSRLDLLEALEVLATSHPELVEPLVLRDVQELDYNEIARLLDTPLGTIKSRIHHARQAVRPLLRVHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFC7</accession>
    <name>A0A0Q8VFC7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12855</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895707.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53245">
        <property type="protein sequence ID" value="KRC53245"/>
        <property type="gene ID" value="ASE19_12855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2029253at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="53"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="75" mass="8297" checksum="CB4FDBD02BD65E78" modified="2016-01-20" version="1">MERDEVEDTSTAWERGEHLPNDARRMGLSPLVPDGAMLEFAGSLDSSKPSHRIVAWVLLVAFLLPVLLTVLRLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFU9</accession>
    <name>A0A0Q8VFU9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13560</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895835.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53373">
        <property type="protein sequence ID" value="KRC53373"/>
        <property type="gene ID" value="ASE19_13560"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="2">
        <location>
            <begin position="900"/>
            <end position="1065"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="97"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1238" mass="134879" checksum="48CAFE997B2DF1C3" modified="2016-01-20" version="1">MTDTTTEAIAAQASYELNHGLDGSSYAVRENLVDILQRELLGPIHGSEESLPFSPRSQYLVGYIAPVKLTGKATAAPEDGGEDPLRPDVVEVRTDDGGVVEGRGVPAYAADDTEADAEDDDAEDRAPKQGLMIPASMGLRFQVPADLEAFRVVASWGTYETVETDKVTKAGRPVREYQRTPVEETRTVRLADLAPGRTATVGLKESIVLRVDRYDDPKFNRLLVEIALCNDRETPMPIPLSMWMFQTKLLVDAGGAEVFLPVQDVMEHDWPEHDEEIKRLNLQYRNRLEFAIGRTCSADWTLKSGSRRATAVETTWLPIGETPQTKARSVEDATLSMDALATVAADALRTGLAPLVDGYGTWLDIQEAEAALLPSHLQETAEVALWEAREAHKRLVAGMEHVATDPEALRCFQFMNRVMRDQRIASQVATARAADAALSIDAAEDLVAGRGASAASWRPFQLAFILMQLGALTVPAAEIRSSEHQSKVELLFFPTGGGKTEAYLGLAAYTFAIRRRQGVVESADGPLDGRDGIAVLMRYTLRLLTAQQFQRATALVCAAELARLEDEELWGREPFRIGLWVGTDVSPKRFEEADEQLKKANEGFGHRLTVLQIQRCPWCGTPITGAQVKADANHRRVFVHCGDELARCPFSKGGAVSEGLPVLTVDEEIYRLAPAFVIATVDKFARLAREGEAAALFGFVSRRCGRHGYVHTDYAHCTVGSHPAKDGLPAATVSPVGRLRPPDLIIQDELHLITGALGTSVGLFEVAVETLSSWETAEGSPVKPLIVASTATVRNAQEQVRGLYGRQVEIFPPQVLDVADTFFSQEVPIDDANPGRRYVGVSAQGVRLSSAEIRVSEVLLAAGQLLLDKAGAAADPYMTLVGYFNATRELAGMARYVADDVQSRVNRPRKDSGFPRRWGTSFGLLNVGELTSRIASSEIGQTLDHLGLEFDADYDTTTATLARIADSRAGKKTASRKNSPFDVVLATSMLQVGVDVQRLGLMLVVGQPKNTAEYIQASSRVGRDPSARPGLVVSLGNWARPRDLAHFEQFKHYHETFYAKVEALSVTPYSPTSLARGVDGLLVSAARVLQATVPEGLSPEREAGRIKDQRTLVESIAAKLKKRIAAAAQDEAATKRANDLLVNRIDRWSERAKRAADMHKTLVYERTGEGGKYLPLIISPENAKASAGGSMEAPFVIANSMREVQPEINLLVSPVPDRLFARTPDGVDGWTLPAGEDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG00</accession>
    <name>A0A0Q8VG00_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13500</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895823.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53361">
        <property type="protein sequence ID" value="KRC53361"/>
        <property type="gene ID" value="ASE19_13500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2076478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="70" mass="8580" checksum="833E344671A34B5F" modified="2016-01-20" version="1">MSIKPLGVPDEWDDNHILMFEEFCVFIRTPQRTVREWRRLKRGPRWWRFNGNGRLYTTVAELRRFLKAGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG63</accession>
    <name>A0A0Q8VG63_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH marR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897002.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53501">
        <property type="protein sequence ID" value="KRC53501"/>
        <property type="gene ID" value="ASE19_14285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1744037at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="157" mass="17284" checksum="A8474A92D61D413A" modified="2016-01-20" version="1">MKASSQAVSDLGILMLLAYQGFVRQLHASMAEKGYDDLGRSDGVVMRLLVQHPRKVSELAPLLEMSPQGAAQIVDDMEQRGYVVRRPDAADARARRVELTERGRGAIDAARAFHRSFETGLARRHGRAQIDAFRAVLESIAGAAPDGLDRELRALYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGU9</accession>
    <name>A0A0Q8VGU9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01920</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892634.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56616">
        <property type="protein sequence ID" value="KRC56616"/>
        <property type="gene ID" value="ASE19_01920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1741894at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="93" mass="10870" checksum="9E62B072A1CA4307" modified="2016-01-20" version="1">MPALDHPVERLHQVRWGLLAAVMVVVIVSRDQWQWWDGLAGPLAFAGFWVPWLVALGHDWTPSAIRARREAPLERARIEAARRELQRRRRTQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH18</accession>
    <name>A0A0Q8VH18_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Preprotein translocase subunit TatB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02810</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sulfur carrier protein TusA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892784.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56766">
        <property type="protein sequence ID" value="KRC56766"/>
        <property type="gene ID" value="ASE19_02810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2042068at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001455">
        <property type="entry name" value="TusA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036868">
        <property type="entry name" value="TusA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01206">
        <property type="entry name" value="TusA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64307">
        <property type="entry name" value="SSF64307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UPF0033" evidence="2">
        <location>
            <begin position="2"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="74" mass="8192" checksum="A1F3C1EF2123E774" modified="2016-01-20" version="1">MIEIDCRDLPCPRPVIELAKALPEVPVGGRIAVVARDPAARYDVPAWCRMRGQAYVGEELADDGVPRYVVERLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH46</accession>
    <name>A0A0Q8VH46_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_02240</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892686.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56668">
        <property type="protein sequence ID" value="KRC56668"/>
        <property type="gene ID" value="ASE19_02240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2070008at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="107" mass="11605" checksum="0CD4174FFAC09185" modified="2016-01-20" version="1">MTYAQYEPSGSPQSLGAEGPWRVAIEYSNQGQAKPSTIVQVGRTSHADHATAMLAAKRAAFEFDPPDPWSPQGRQVFRDGQDGFLVIIEGATSTFHMSVRIVAEVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH61</accession>
    <name>A0A0Q8VH61_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02330</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the YggT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892702.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56684">
        <property type="protein sequence ID" value="KRC56684"/>
        <property type="gene ID" value="ASE19_02330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2069856at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003425">
        <property type="entry name" value="CCB3/YggT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02325">
        <property type="entry name" value="YGGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="68"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="97" mass="11050" checksum="5DA7AC91400BA18D" modified="2016-01-20" version="1">MSIAGWIIEGILFAFIAFLWVRFITDWVQMFARSWEPRGVMLVFLELSYSATDPPISALRKVIKPIRIGNFALDLSFLLVMILAYVALSVNRNTLLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH85</accession>
    <name>A0A0Q8VH85_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">PBP_domain domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02130</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892668.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56651">
        <property type="protein sequence ID" value="KRC56651"/>
        <property type="gene ID" value="ASE19_02130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1222928at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024370">
        <property type="entry name" value="PBP_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12849">
        <property type="entry name" value="PBP_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360039" description="PBP_domain domain-containing protein" evidence="3">
        <location>
            <begin position="37"/>
            <end position="558"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="528"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="domain" description="PBP_domain" evidence="4">
        <location>
            <begin position="34"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="442"/>
            <end position="489"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="558" mass="57690" checksum="0059A89ED412B431" modified="2016-01-20" version="1">MNPKLAHRPALRGARAVAILLAGYLAVAAGPGAASAAAPSYALIQGSGSSWAANAVNQWVADVDAKGLKVVYTANGAAQGRKDYANKSTDFGVTDSPYRGKDPTTGATDSSLGRSFAYLPVVAGGTAFPYNLEVGGQRVRNLRLSGETLAKIFTNKITNWNDAAVTKDNNGRALPSIPIIPVVRADGAGVTNQFSTWMTSQYPSLWKDCNGGKAAPTDYFPLNCGDARGPQRAQTGSDGVMNFIKAKGSVGAIAMEEYSYPLMAGYPVAKLLNRAGYFTLPTQYNVAVALTKAEINDDPSDPNYLTQKLDKVYVNPDKRTYPLSSYVYAIVPTAADDSRMTTAKRQTIVDFLKHSICEGQSEIGPIGYSPLPINLVQASFTQVNKLKKADPKVVFDSTIIKNVKNCHNPTFVAGHPEQNLLAKIAPFPADCDRPTKGPCADGVGTYNDNPGGTGGPKTGTPGGGTGGGGGGAATADTDGDGIPDAPAAGGDVPVAGVNDDGTGTGTTTGDVQVVATTLDPDAGSGPPAVLAALVVGLFAGVLVVPPVVAQLVGRRRTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH94</accession>
    <name>A0A0Q8VH94_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895252.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53821">
        <property type="protein sequence ID" value="KRC53821"/>
        <property type="gene ID" value="ASE19_06950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="806182at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="18"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="219"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="257"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="284"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="309"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="350"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="374"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="405" mass="41782" checksum="7AE8FA8173152B29" modified="2016-01-20" version="1">MSSEAAGAPDRTRPLERALVVVGIVVLAFNLRPAAISVGPLLDEVSTGLGMGAAETALLTTLPVLSFATLGALAPRIARAAGLHRSTLAALVLVVVGLWLRTTVASGVLFLLLSFLALGGMAVANVLLPSLVKLHFPHRVGLMTSLYSTALAVGITSSSVLTVPIAEAGAELDWRRGLLAWALTAAVAVVPWLALARHDAHAEEPDRSLGAGAVARTRLGWVMAVFFGLQSLQAYSIFGWMATIYRDAGSSAHEAGLLLGLVTGISIPLSLVIPWLTARVERKGLLLTAIMACYPIGYVGLLVSPSTGAPLWALALGAGTCTFPFILTLIALKARTPAGTAALSAFTQSAGYLISAVGPFGVGVLHAVSGGWTVPIVVLLALCVPQYLLGLVAARPSLVEDELST</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHB0</accession>
    <name>A0A0Q8VHB0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06755</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53793">
        <property type="protein sequence ID" value="KRC53793"/>
        <property type="gene ID" value="ASE19_06755"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="36"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="445" mass="47081" checksum="B54FD3D3A7769C21" modified="2016-01-20" version="1">MADARHLKLGTWFYLGLALLFVLLVAKAEIQSYLYDGRTITAEFDDSYKLRPHDSSVKMAGLTVGTVTDLRRTDTGSTIVTMKVDDEALDTLGAAPIARIEPRTLLGGRYAIELHAGGGEGKFDGVIPIERTSTPVELDQIVEALPKSSREALQGLVGTTSATLGEADDELNGLLKTAPSVLDPGTDVLNAVRGDRPAKDLPGLVTDLNATADVATRRDGQLAGIARDLRVTSGVLADNRGALAETLAKLPQTLSATRGGLSGLDDSVTELTATAKALRPSAPELANLVSSLDPLLRDMRPLMSDLKPLLRDARPAVQALVPTARNLDEVLTNVRGPVLDRVTGPVSKFVLNPWKGTGPYKGGAGGYMADHKFYEELAYMATNIDRASMSQDQRGSTLAFQAGVGLSSLSGLPFDLESLVTLALDQAGITGALRSSIFKNLGLVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHG9</accession>
    <name>A0A0Q8VHG9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Nickel/cobalt efflux system</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_07320</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NiCoT transporter (TC 2.A.52) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895317.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53885">
        <property type="protein sequence ID" value="KRC53885"/>
        <property type="gene ID" value="ASE19_07320"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1917667at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015099">
        <property type="term" value="F:nickel cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011541">
        <property type="entry name" value="Ni/Co_transpt_high_affinity"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03824">
        <property type="entry name" value="NicO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0533">Nickel</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="73"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="109"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="160"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="190"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="236"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="26565" checksum="A3A233904998D2DC" modified="2016-01-20" version="1">MPPTLSAAALAVEDLSASALDDRLVDLVQSPGFVPAAFAIAFVAGAAHAVGPGHGKSLAAAYLVGADGKVRDAAWLGASVAVMHTFSVLVIAVAWTFLSLSELVRLERLTTGLQLVGGLMVVAVGIWLFRRHLRRGGHGHGHGHGHGHGHGHEGPSRPGLVLLGMSGGLTPSPAAFLVLVTGIFAGRSGFALLLVVTFGLGLAAVLFGVGLLALAGRGVVTRAAESRAVLTAATRVAPVLAAASITVIGCVVTSMALSRLVVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHK9</accession>
    <name>A0A0Q8VHK9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894160.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54921">
        <property type="protein sequence ID" value="KRC54921"/>
        <property type="gene ID" value="ASE19_05565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041581">
        <property type="entry name" value="Glyoxalase_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18029">
        <property type="entry name" value="Glyoxalase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="5"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="130" mass="14594" checksum="547BA4288476DB39" modified="2016-01-20" version="1">MGNPRLRSVVLDTTDVPRLAEFYRELLGWSYPPGVDVDELTDWRAIIGPSGERIAFQEVAELPPTTWPTAEVPQQAHLDLQVDGRADLDHNHERALALGAVLRLDRSDDPEEPLRVYADPAGHTFCLFTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHS3</accession>
    <name>A0A0Q8VHS3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Methionine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Methionyl-tRNA synthetase</fullName>
            <shortName evidence="9">MetRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">metG</name>
        <name evidence="12" type="ORF">ASE19_05145</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 9">Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-methionine + tRNA(Met) = AMP + diphosphate + L-methionyl-tRNA(Met)</text>
            <dbReference type="Rhea" id="RHEA:13481"/>
            <dbReference type="Rhea" id="RHEA-COMP:9667"/>
            <dbReference type="Rhea" id="RHEA-COMP:9698"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78530"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="9">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.10" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894230.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54851">
        <property type="protein sequence ID" value="KRC54851"/>
        <property type="gene ID" value="ASE19_05145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="761140at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004825">
        <property type="term" value="F:methionine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006431">
        <property type="term" value="P:methionyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07957">
        <property type="entry name" value="Anticodon_Ia_Met"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00814">
        <property type="entry name" value="MetRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00098">
        <property type="entry name" value="Met_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041872">
        <property type="entry name" value="Anticodon_Met"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023458">
        <property type="entry name" value="Met-tRNA_ligase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014758">
        <property type="entry name" value="Met-tRNA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015413">
        <property type="entry name" value="Methionyl/Leucyl_tRNA_Synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033911">
        <property type="entry name" value="MetRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029038">
        <property type="entry name" value="MetRS_Zn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45765">
        <property type="entry name" value="PTHR45765"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09334">
        <property type="entry name" value="tRNA-synt_1g"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01041">
        <property type="entry name" value="TRNASYNTHMET"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57770">
        <property type="entry name" value="SSF57770"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00398">
        <property type="entry name" value="metG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="tRNA-synt_1g" evidence="11">
        <location>
            <begin position="7"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="9">
        <location>
            <begin position="11"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="9">
        <location>
            <begin position="350"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="353"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF09334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC54851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="596" mass="66039" checksum="F01D1F01F6EF9421" modified="2016-01-20" version="1">MTHVLSAVAWPYANGPRHIGHVAGFGVPSDVFSRYQRMAGNDVLMVSGSDEHGTPILIAADEAGMTPQELADKNHRLIVEDLVALGITYDLYTRTTTRNHHAVVQELFLGVYENGYFVEQTTFGAVSPSTGRTLPDRYIEGTCPNCGYDGARGDQCDNCGKQLDPQDLKNPRSRINGETPEFIETQHFFLDLPALAEALQAWLDDREATGLWRPNVIRFSQNILEEIRPRAMTRDIDWGIAVPLDGWRDNPTKKLYVWFDAVIGYLSASIEWARRTGNPDAWRDWWNDPEALSYYFMGKDNITFHSQIWPAELLAYAGKGDKGGSPREYGELNLPTEVVSSEFLTMEGKKFSSSKKIVIYVHELLSRYQPDAFRYFVAAAGPESQDSDFTWAEFVRRTNDELVAGWGNLVNRTATLIAKNFGEIPAAGELTAEDQAVLDATEAAFDVVGDLIGRHRQKQAIGEAMRAVAEVNKYVSDTEPWKIKEDPARLGTVLHVMAQCVADLNLVLSPFLPFSANEVDKAFGGTGAVAPMPVVEEVADLDDATRSYPIITGDYAGFPSWSRHAIAVGTPVAKPTPVFTKLDPSVIDEELARLEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI53</accession>
    <name>A0A0Q8VI53_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_03790</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892951.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56934">
        <property type="protein sequence ID" value="KRC56934"/>
        <property type="gene ID" value="ASE19_03790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="3">
        <location>
            <begin position="45"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="409"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="430" mass="45434" checksum="403F197047478E34" modified="2016-01-20" version="1">MRIPHQAVPKLKGVTLIVFLAVCTTIVSFLWLQAGGKIPVLSRAGYQVTVPYDDVDNLVFQSDVRIAGVEVGQVEAIDVKGDKAMVTLELDDAAVPLHEGAVITVRNKTMIEETYLEIVDGDGSAYDDGATLPASAARGSVQLNDVLTSLDAPTRKDLAKLVRSGGQATKDTREDVGAVLAGLGDLGQNAGALEALSEQSDDLRSLVRSSTAVLDALDTQQGRIVDLTKDAQTLTAVTAGHEDDVTALMRALPPLLVTTEKASDSLADLSAPLGTVSRNLRGAAPDLSGALVELPATTQDLRGLLPSLDTTLDRAPASLTRLEPMQGAVSPLLRTLQVNLADLNPMLAYLKPYGHDLVSYWTNFIGFVGSSDSNGPIARVKPVLGISSLNLPVGASPTTYYNPYPAPGAHNDPGEFTGEYPRIEEDPIPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJB7</accession>
    <name>A0A0Q8VJB7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07610</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895369.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53938">
        <property type="protein sequence ID" value="KRC53938"/>
        <property type="gene ID" value="ASE19_07610"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="62" mass="6828" checksum="3955157200E17AE5" modified="2016-01-20" version="1">MTGLEHQTETLPRAAFMVVLSGSCPVHEDAVAETPCWTILGDGRPRVAVCGDRVRRHLERAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK22</accession>
    <name>A0A0Q8VK22_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08915</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895594.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54162">
        <property type="protein sequence ID" value="KRC54162"/>
        <property type="gene ID" value="ASE19_08915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="7"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="420"/>
            <end position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="514" mass="55830" checksum="295D5661D53B0F4F" modified="2016-01-20" version="1">MYPGAFAQTTPDKPAILMADTGEVRTYAQLEENSIRLARALHDHGLRPGDHVAFLSTNAPQVFEVYWAALRSGLYVTGVNNRLSADEAGYVVDDCGARVLVVSADVADTAVALGEHTPGVTLRLAFGGEVPGFGSYDDALAASDPTPMADQPRGADMLYSSGTTGRPKGIKPPLPPRQVGEPGDMFTAVFAPMYGFDTQTTYYSPAPTYHAAPLRFGGIVHATGGTVVMTKKFDAETTLRIIEEHRVTHAQFVPTMFVRMLKLPERTRLAYGHETLRAIIHAAAPCPVEVKRAMIAWWGPVLHEYYASTEANGITLIRPEEWLEKPGSVGRAGLGIIHICDEDGTELPTGEDGTVYFERDTAPFEYHNDPEKSREARHPRHDGWTTTGDVGHVDEDGYLFLTDRKAFMIISGGVNIYPQEVENALALHPKVQDVAVIGVPDDEMGESVKAVVELPPGIAPSDELAAEIIAFVRDRIAHYKTPRSVDFVDALPRTDTGKLLKKQLTAAYAAVPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKZ0</accession>
    <name>A0A0Q8VKZ0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Adenosylmethionine-8-amino-7-oxononanoate aminotransferase</fullName>
            <ecNumber evidence="4">2.6.1.62</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">7,8-diamino-pelargonic acid aminotransferase</fullName>
            <shortName evidence="4">DAPA AT</shortName>
            <shortName evidence="4">DAPA aminotransferase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">7,8-diaminononanoate synthase</fullName>
            <shortName evidence="4">DANS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Diaminopelargonic acid synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">bioA</name>
        <name evidence="6" type="ORF">ASE19_05340</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only aminotransferase known to utilize SAM as an amino donor.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>(8S)-8-amino-7-oxononanoate + S-adenosyl-L-methionine = (7R,8S)-7,8-diammoniononanoate + S-adenosyl-4-methylsulfanyl-2-oxobutanoate</text>
            <dbReference type="Rhea" id="RHEA:16861"/>
            <dbReference type="ChEBI" id="CHEBI:16490"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:149468"/>
            <dbReference type="ChEBI" id="CHEBI:149469"/>
            <dbReference type="EC" id="2.6.1.62"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Cofactor biosynthesis; biotin biosynthesis; 7,8-diaminononanoate from 8-amino-7-oxononanoate (SAM route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.62" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894201.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54880">
        <property type="protein sequence ID" value="KRC54880"/>
        <property type="gene ID" value="ASE19_05340"/>
    </dbReference>
    <dbReference type="OrthoDB" id="478143at2"/>
    <dbReference type="UniPathway" id="UPA00078">
        <property type="reaction ID" value="UER00160"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004015">
        <property type="term" value="F:adenosylmethionine-8-amino-7-oxononanoate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009102">
        <property type="term" value="P:biotin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00834">
        <property type="entry name" value="BioA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005815">
        <property type="entry name" value="BioA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00508">
        <property type="entry name" value="bioA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-0093">Biotin biosynthesis</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 4 5" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="4">
        <location>
            <begin position="118"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="4">
        <location>
            <begin position="314"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="151"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="253"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="313"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="397"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Participates in the substrate recognition with KAPA and in a stacking interaction with the adenine ring of SAM" evidence="4">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="430" mass="45547" checksum="A65460D21AB5147D" modified="2016-01-20" version="1">MTTAPADVLAFDREHLWHPYTSMTEPTPVRLVTGASGARLTLGGGYDGREVVDGMSSWWSAIHGYRHPVLDAALRDQAAEFSHVMFGGLTHAPAVELGRRLLSVTPEPLERVFLADSGSVSVEVAMKMVLQYQRGVGRPDRTRMLTVLGGYHGDTFDCMSVTDPVGGMHAMWQGLLPQQVFAPQPPSALAPEDEVAQWATTLRHIADQHHHELAGIIVEPLLQGAGGMWPYPAACLKVLREVADEHGLLLVFDEIATGFGRTGHLFVSDLVTPDILCVGKALTGGYLTLAAVLTTDAVARGISASEAGVVMHGPTFMGNPLACAVASASIDVLLAGDWSATVGHIGSRLATGLAPLRDLPGVRDVRTLGAVGVVQLDHDVDVVAATDAAIEAGVWLRPFRDLVYAMPPYVISDDELDTLVAGIGAAVRAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLK5</accession>
    <name>A0A0Q8VLK5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">30S ribosomal protein S17</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpsQ</name>
        <name evidence="6" type="ORF">ASE19_06540</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 4">Belongs to the universal ribosomal protein uS17 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894490.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55085">
        <property type="protein sequence ID" value="KRC55085"/>
        <property type="gene ID" value="ASE19_06540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2035880at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01345_B">
        <property type="entry name" value="Ribosomal_S17_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019984">
        <property type="entry name" value="Ribosomal_S17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000266">
        <property type="entry name" value="Ribosomal_S17/S11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019979">
        <property type="entry name" value="Ribosomal_S17_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10744">
        <property type="entry name" value="PTHR10744"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00366">
        <property type="entry name" value="Ribosomal_S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00973">
        <property type="entry name" value="RIBOSOMALS17"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03635">
        <property type="entry name" value="uS17_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00056">
        <property type="entry name" value="RIBOSOMAL_S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 4 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 3 5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="91" mass="10465" checksum="6D35FF686CDFF5B8" modified="2016-01-20" version="1">MSESVNETARNARKTREGLVVSDKMDKTVVVSVEDRVKHALYGKVMRRNTRLKAHDEQNDCGVGDRVLIMETRPLSATKRWRVVEILERAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMQ1</accession>
    <name>A0A0Q8VMQ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Histidinol phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_03540</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892906.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56889">
        <property type="protein sequence ID" value="KRC56889"/>
        <property type="gene ID" value="ASE19_03540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1741160at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046855">
        <property type="term" value="P:inositol phosphate dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020583">
        <property type="entry name" value="Inositol_monoP_metal-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000760">
        <property type="entry name" value="Inositol_monophosphatase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00459">
        <property type="entry name" value="Inositol_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00377">
        <property type="entry name" value="IMPHPHTASES"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00629">
        <property type="entry name" value="IMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="263"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="301" mass="32763" checksum="E8F51330E7F3DEE4" modified="2016-01-20" version="1">MAAPDYTDDLRLAHLLADDADSLTQARFRAIDLHVMSKPDLTPVTDADQAVEASIRRTLSKARSRDAVTGEEQGTSGHSQRRWIVDPIDGTKNFVRGVPVWATLISLVVDDEVVLGVVSAPALQRRWWASTGQGAWTGKSLMKATPCRVSDVRRLEDASFSYSSISGWEDRGIGEDLLALMRRVWRTRAYGDFWSYMLLAEGAVDLAAEPELEVYDMAALDVIVREAGGRFTSLDGRDGPWGGNALASNGHLHEAALSFLGSMDGGDDDPDWPRTGPGSVSDLRSRRRSTDETSDGAPGSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMV1</accession>
    <name>A0A0Q8VMV1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Zn-dependent hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_06180</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M20 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894436.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55026">
        <property type="protein sequence ID" value="KRC55026"/>
        <property type="gene ID" value="ASE19_06180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="829830at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016813">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010158">
        <property type="entry name" value="Amidase_Cbmase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001261">
        <property type="entry name" value="ArgE/DapE_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32494">
        <property type="entry name" value="PTHR32494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001235">
        <property type="entry name" value="Amidase_carbamoylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01879">
        <property type="entry name" value="hydantase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00758">
        <property type="entry name" value="ARGE_DAPE_CPG2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="M20_dimer" evidence="5">
        <location>
            <begin position="208"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="186"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="211"/>
        </location>
        <ligand>
            <name>allantoate</name>
            <dbReference type="ChEBI" id="CHEBI:17536"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="269"/>
        </location>
        <ligand>
            <name>allantoate</name>
            <dbReference type="ChEBI" id="CHEBI:17536"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="282"/>
        </location>
        <ligand>
            <name>allantoate</name>
            <dbReference type="ChEBI" id="CHEBI:17536"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="377"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001235-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR001235-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="411" mass="44457" checksum="AA52326505B80C57" modified="2016-01-20" version="1">MSTADVVLARCGELDAISASPTWLERTHLTPEHRQANALAGRWMKAAGLHVWQDAAGNICGRREGSSPGMPALLLGSHLDTVPDAGSFDGMLGVLMAIAVAERLQHVTLPFALEVIGFSDEEGARFGKALLGSQAVAGTWDEAWWDLRDRDDVTLHQAFLEFGLDPRRVGDAARRPDELVGYLEAHIEQGPYLEAADASLGHVTTIAGARRFRLSVTGEARHAGGTPYERRRDALLGAAEMIVAVERLARAAGTIATVGRIEVQPGAVNVIAGRADLSLDLRAATDPERDRSWDEIEQELRAICVRRDLRLDLVETHRAPAAPCAAWLSEAVVAGIRTTGDDHPMGLWSRAGHDAMAIAAITGIGMLFLRCHDGISHHPDESVREVDVARGLDAFEQAVLEVARRYDEARP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN59</accession>
    <name>A0A0Q8VN59_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-ketoacyl-ACP reductase</fullName>
            <ecNumber evidence="1">1.1.1.100</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">fabG</name>
        <name evidence="1" type="ORF">ASE19_23105</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.100" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892537.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58949">
        <property type="protein sequence ID" value="KRC58949"/>
        <property type="gene ID" value="ASE19_23105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004316">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="301" mass="31171" checksum="5BFFB87F927C469F" modified="2016-01-20" version="1">MDQGTSLEGKVAIVTGAGAGLGRAEALALARAGARVVVNDLPGAGDDAVEEIRSFGGEALVVPGDVSRRETADAMMAAAVDQLGGLDIVVNNAGMTRDRMLFNLSDDEWDAVIAVHLRGHFLLSRNAASYWREQSRLSESGTVYGSIVNTASEAFLGGSPGQANYAAAKAGIAALTLSTARGLAKIGVRANAICPRARTAMTAAVFGEDESGQSVDPYSAEHVAPLVAYLASPAAERITGQVFVVYGGMVALVAAPVVEQRFDASGDLWTGDDLDKQLGGFFADRDPHVGFAADTIMKLTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQA4</accession>
    <name>A0A0Q8VQA4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Thiamine-phosphate synthase</fullName>
            <shortName evidence="9">TP synthase</shortName>
            <shortName evidence="9">TPS</shortName>
            <ecNumber evidence="9">2.5.1.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Thiamine-phosphate pyrophosphorylase</fullName>
            <shortName evidence="9">TMP pyrophosphorylase</shortName>
            <shortName evidence="9">TMP-PPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">thiE</name>
        <name evidence="13" type="ORF">ASE19_00625</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 9">Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9 10">
            <text>2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate + 4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + 2 H(+) = CO2 + diphosphate + thiamine phosphate</text>
            <dbReference type="Rhea" id="RHEA:47848"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37575"/>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
            <dbReference type="ChEBI" id="CHEBI:62890"/>
            <dbReference type="EC" id="2.5.1.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 9 10">
            <text>2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate + 4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + 2 H(+) = CO2 + diphosphate + thiamine phosphate</text>
            <dbReference type="Rhea" id="RHEA:47844"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37575"/>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
            <dbReference type="ChEBI" id="CHEBI:62899"/>
            <dbReference type="EC" id="2.5.1.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 9 10">
            <text>4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + 4-methyl-5-(2-phosphooxyethyl)-thiazole + H(+) = diphosphate + thiamine phosphate</text>
            <dbReference type="Rhea" id="RHEA:22328"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37575"/>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
            <dbReference type="ChEBI" id="CHEBI:58296"/>
            <dbReference type="EC" id="2.5.1.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="9">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5 9 11">Cofactor biosynthesis; thiamine diphosphate biosynthesis; thiamine phosphate from 4-amino-2-methyl-5-diphosphomethylpyrimidine and 4-methyl-5-(2-phosphoethyl)-thiazole: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9 10">Belongs to the thiamine-phosphate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.3" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896768.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59572">
        <property type="protein sequence ID" value="KRC59572"/>
        <property type="gene ID" value="ASE19_00625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1558094at2"/>
    <dbReference type="UniPathway" id="UPA00060">
        <property type="reaction ID" value="UER00141"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004789">
        <property type="term" value="F:thiamine-phosphate diphosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00564">
        <property type="entry name" value="TMP_TenI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00097">
        <property type="entry name" value="TMP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036206">
        <property type="entry name" value="ThiamineP_synth_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022998">
        <property type="entry name" value="ThiamineP_synth_TenI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034291">
        <property type="entry name" value="TMP_synthase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02581">
        <property type="entry name" value="TMP-TENI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51391">
        <property type="entry name" value="SSF51391"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00693">
        <property type="entry name" value="thiE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9 10" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="6 9 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TMP-TENI" evidence="12">
        <location>
            <begin position="19"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="region of interest" description="HMP-PP binding" evidence="9">
        <location>
            <begin position="32"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="region of interest" description="THZ-P binding" evidence="9">
        <location>
            <begin position="128"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="64"/>
        </location>
        <ligand>
            <name>4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine</name>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine</name>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine</name>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="157"/>
        </location>
        <ligand>
            <name>2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:62899"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00003814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC59572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="198" mass="19718" checksum="7035509C8C2133B7" modified="2016-01-20" version="1">MTALPRLFCLVSATDDHYLLPALAAAGVDGFQVRAKDLSSRALRNFTREVLAAVRPYGARVVVNDRLDVALAAGADGVHLGADDLAVADARRIAPGLLVGATCRSRAEVVAAAEAGADYAGFGPVHLSGSKAGLPAPLGVAAVTAAAGVLPLVAIGGLTAPSAAEVRAAGAHGVAVIGAIWRHPDPVAAAKELLTALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQH1</accession>
    <name>A0A0Q8VQH1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00490</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896793.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59547">
        <property type="protein sequence ID" value="KRC59547"/>
        <property type="gene ID" value="ASE19_00490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1816476at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071704">
        <property type="term" value="P:organic substance metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007848">
        <property type="entry name" value="Small_mtfrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05175">
        <property type="entry name" value="MTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MTS" evidence="1">
        <location>
            <begin position="29"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="199" mass="21115" checksum="901CE2A5B5D05A43" modified="2016-01-20" version="1">MSDEHYFSADPSVAFQRAPVETEVWGHELRLVSGSGVFAQGRLDIGTSVLFRETQPPTGGRILDLGCGYGVIGIACAVAAPDAIVTAVDVNQRAVLLANENAASAGVADRLTASVPEEVAADAQFDEIWSNPPIRIGKAALHELLLTWLPRLAPGGRAVMVVGKNLGADSLQRWLGEQGFPTERVASAKGFRVLESRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQI8</accession>
    <name>A0A0Q8VQI8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lipopolysaccharide kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00575</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896777.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59563">
        <property type="protein sequence ID" value="KRC59563"/>
        <property type="gene ID" value="ASE19_00575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="605861at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025111">
        <property type="entry name" value="DUF4032"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13224">
        <property type="entry name" value="DUF4032"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DUF4032" evidence="1">
        <location>
            <begin position="228"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="400" mass="44747" checksum="CBC8E8E01B89C7DE" modified="2016-01-20" version="1">MALHVVAARTDPALFRLPWSRPLADWEDWYVVNLPLGLSRHVVRVVQVNRQFLAVKETTEEIALREYELLRDLQRLDQPAVVPRGVVTGRVDDAGEPLPAALLTEHLHYSLPYRTVFQHGLRAEQVPALVDALVVLLVRLHLAGFFWGDVSLSNALFRRSAGGFAAFLVDAETGELRASVSDAMREHDVTVGVENIFAELLDLQASGDTDIEVDGQAVVAQLAEQYHSLWDELTAAEEFGADEWYRIEQRIARLNDLGFDVDELDVQAASDRVRIQPKVVEAGHHRRELRELTGLSAEDSQARKLLNDLAAFTAHFGYDDEDRAVVAHRWLTTIYNPIVALLPAGLADRIAPPELFHEVMEHRWALSAQAGHEVDIFDSARDYVATVLPHRPPDSPSGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQJ7</accession>
    <name>A0A0Q8VQJ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cytochrome D ubiquinol oxidase subunit II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_00255</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cytochrome ubiquinol oxidase subunit 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896830.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59510">
        <property type="protein sequence ID" value="KRC59510"/>
        <property type="gene ID" value="ASE19_00255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="761975at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003317">
        <property type="entry name" value="Cyt-d_oxidase_su2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43141">
        <property type="entry name" value="PTHR43141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02322">
        <property type="entry name" value="Cyt_bd_oxida_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="78"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="117"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="163"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="197"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="234"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="259"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="298"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="335" mass="34932" checksum="FE523207D1400DD2" modified="2016-01-20" version="1">MSLEVAVAAALFVGVIAYAVLGGADFGSGFFDLTAGSSRRGAELRTLVDHSIGPVWEANHVWLIYVLVIWWTGFPESFAAAMSTLVLPLLFALLGIVLRGASFAFRKYAETLGQARLFGIVFAASSIITPFFLGTVAGAIASGRVPMDGAGDRWSSWVNPTSLFGGLIAVGTCAFLAGTFLVADAERSGNHRLAGEIRARALAVGLVTGALVFAALLPIDHDAPTLAAGLEGRAAPLVVLAALAGVATTYLLWTRRYGVARITAVLAVAAVVSGWGVGQYPWLLVDEVTIHDAAGATATLQGLLVAVGLAVVAVVPPLAYLFRLTQSEEWTRADH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQT7</accession>
    <name>A0A0Q8VQT7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02530</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892738.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56720">
        <property type="protein sequence ID" value="KRC56720"/>
        <property type="gene ID" value="ASE19_02530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1387978at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="254" mass="27648" checksum="DDD72DBDB6362C39" modified="2016-01-20" version="1">MRLVTFNILNGRRPEDDVVDTQVLSAAVRELAPDVLALQEVDRNQQRSGHADLTAVAAEAMGAPYHRFVAALAGSPGATWTAATGREQPEDAAYGIALLSRFEVTGWEVVRLPVLPVQVPMRFRGQVRPSLVRDEPRVAVAASVRTPAGDLTVATTHLSFIRWWNGRQLAHLSRALSGAHRPLLVTGDLNMDAARASRITGLRSLADRATYPAAEPVEQLDHVLADRPLRALAQARAMDLSDHRALVVDLDLDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR04</accession>
    <name>A0A0Q8VR04_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03495</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892898.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56881">
        <property type="protein sequence ID" value="KRC56881"/>
        <property type="gene ID" value="ASE19_03495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1582456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="279" mass="29118" checksum="AF6FF35179DAC596" modified="2016-01-20" version="1">MTNTRGTVLITGCSSGIGAATAQRLAANGWDVWASARRPETLADLAAAGCRTVALDVTDEASMTGAVDAVLAGSGRIDALVNNAGYSQSGALESLDVDDVRRQFETNVFGLLRLTQLVLPTMREQRSGRIVNIGSMGGKLTFPGGGAYHATKYAVEALSDALRFEVSGFGIKVVLIEPGLITTNFEAAVAAGMPTGEGPYAAFNAQVQSATSEAYGGPMARFGGPPEAVAKVIEKALTKGHPKPRYTVTVSAPAAMVTRKVLGDRGWDLAMRAQFPRPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR29</accession>
    <name>A0A0Q8VR29_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Elongation factor G</fullName>
            <shortName evidence="6">EF-G</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6 8" type="primary">fusA</name>
        <name evidence="8" type="ORF">ASE19_00695</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896757.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59583">
        <property type="protein sequence ID" value="KRC59583"/>
        <property type="gene ID" value="ASE19_00695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="88967at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16262">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01434">
        <property type="entry name" value="EFG_mtEFG1_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03713">
        <property type="entry name" value="EFG_mtEFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00054_B">
        <property type="entry name" value="EF_G_EF_2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041095">
        <property type="entry name" value="EFG_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009022">
        <property type="entry name" value="EFG_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035649">
        <property type="entry name" value="EFG_V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004540">
        <property type="entry name" value="Transl_elong_EFG/EF2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005517">
        <property type="entry name" value="Transl_elong_EFG/EF2_IV"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14492">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03764">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00889">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00484">
        <property type="entry name" value="EF-G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6 8" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="5 6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="7">
        <location>
            <begin position="10"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="19"/>
            <end position="26"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="83"/>
            <end position="87"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="137"/>
            <end position="140"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="707" mass="77165" checksum="E4CA8D3FF7D99A9A" modified="2016-01-20" version="1">MAVDITTDLNVVRNIGIMAHIDAGKTTTTERILFYTGITYKIGEVHDGGATMDWMEQEQERGITITSAATTCWWKKHQINIIDTPGHVDFTVEVERSLRVLDGAVAVFDGVAGVEPQTMTVWRQANKYAVPRMCFVNKLDRTGADFYRVVDSIVAKLNSTPLVLQLPIGAEGDFIGVVDLVEMNAKVWRGETAQGEDYVVEEIPADLADKAAEYREKLVETLAEADDDIMEVYLEDGDTFDVPTLKAAIRRATLADKLNPILTGTAFKNKGVQPLLDAIVDYLPSPLDVDGIVGHKPGSEETEENEIVRKPSSDEPLAALAFKIAADPHLGKLTFVRVYSGKLEAGGTVLNTSNGRKERIGKVYQMHANKREEIASVGAGQIVAVMGLKDTRTGHTLSDATKQVVLESMTFPAPVISVAIEPKTKADQEKLGVAIGRLAEEDPTFVVKTDEETGQTIISGMGELHLEILVDRMKREFKVEATVGKPQVAYRETIRGTVSNHSYTHKKQTGGSGQFAKVVISLEPNIDPETGLGAGYEFVNNVSGGRVPREYIPSVDNGGQEAMEFGVLAGYPMVDVKFTLEDGAYHDVDSSELAFKIAGIQSFKEAARKAKPCLLEPMFAVEVTTPEDYLGTVIGDINSRRGQIRAQEERHGDIVVSALVPLSEMFGYVGDLRSKTSGQASYSMEFDSYAEVPTNIADEIIKKVRGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR74</accession>
    <name>A0A0Q8VR74_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01770</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896568.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59771">
        <property type="protein sequence ID" value="KRC59771"/>
        <property type="gene ID" value="ASE19_01770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="2"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="25"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="20022" checksum="791D40928E95D4A2" modified="2016-01-20" version="1">MDASTARLVRGAREAFLRLGVAGTSMSDIARAAGVVRQTVYKSVSTRDDLVELAIVQVCEELQARVDAFDHAAYEDLVDRLAEFLANAIEVTAADAELATLAAALPGDRVRAVLGGSHPLEVLIEQSLHPILEDADASGRLRPGATVDLAARWLQGVLTWFLLGEHDDPAALRRELRQYAVPSVLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRJ6</accession>
    <name>A0A0Q8VRJ6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01525</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896612.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59727">
        <property type="protein sequence ID" value="KRC59727"/>
        <property type="gene ID" value="ASE19_01525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="2"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="25"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="190" mass="20605" checksum="2522A50140636A2A" modified="2016-01-20" version="1">MDAATATLARAARETFARYGVRRATMADVAQTAGVVRQTVYNTVSSREQLIELAIVQCCEELKESLTAAGRDDPEDIDEALLAFLLRAVATASTHTELNDLNAALPPARVEELFGHSHPIEELIRETARPVLERALTAGRLRPGATVDEAGRWIQGILTFALLHDAELAAPGELERVLRTFALPSVLTGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRQ1</accession>
    <name>A0A0Q8VRQ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">UDP-galactopyranose mutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892724.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56706">
        <property type="protein sequence ID" value="KRC56706"/>
        <property type="gene ID" value="ASE19_02460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="418913at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="15"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="438" mass="47019" checksum="6B0832E8FEBFB2D3" modified="2016-01-20" version="1">MARIVVIGGGLGGSAAAARLAKQGHEVALLEASHRLGGALAPVEQDGYRWDAGPASTLVPAALRDLFRKSGRPIENELGGDLEPLPVIREHRFADRTSVRLPGGSRADQIAAFDELGPGLGEVWARHVDIYDAVWDILRRHYVEAPTTPADRRSLPKELDDLFNIRETLFKRLRHDFRDERLALVAGHVPTAEGHDLRNVPSWVGVSSYLEQTFGAWRVPGGMGRVAELLEARLALREVTVRTGVEVTDVVVRDGRVVAVRTNEGDADADAVVVAVDPRRLPSLATYVERTMPAIPPVVSHLGLRGDVPPLTHEIVFNAEPMIIVRPGVSAPEGGTAWTLHGRGKIAEDMVSALVRHGLDVRDNIVTRVDLTPRDLVEQWRGSPMGVLWQGRGTVRARLGPTTPVAGLYLAGAHGAPGAGVPFVAQSAALVAGLIGPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VT14</accession>
    <name>A0A0Q8VT14_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Antibiotic biosynthesis monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23565</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893979.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57773">
        <property type="protein sequence ID" value="KRC57773"/>
        <property type="gene ID" value="ASE19_23565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1909149at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="104" mass="11353" checksum="95A492DF6720519C" modified="2016-01-20" version="1">MLVVNRFRAGADPASLRAELELVHGLLAGQTGYVAGWVGRNLDDPDLWTLTTTWVHVGAYRRALSSYDIKLHGVLVLSRAIDEPGAYEVVEPGEVLNVAEPRVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW34</accession>
    <name>A0A0Q8VW34_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23950</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57415">
        <property type="protein sequence ID" value="KRC57415"/>
        <property type="gene ID" value="ASE19_23950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1986682at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="82" mass="8930" checksum="FC954F2174B99BA3" modified="2016-01-20" version="1">MTMRAQPPRTGIELDALDPATSPGRDARYFRRIVAARRGIEDAEAELRAAVRAARAAGDSWAVIGAALETTRQAAYQRFGQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWU6</accession>
    <name>A0A0Q8VWU6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutamate--cysteine ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22720</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-cysteine + L-glutamate = ADP + gamma-L-glutamyl-L-cysteine + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13285"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58173"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.2"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892603.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58880">
        <property type="protein sequence ID" value="KRC58880"/>
        <property type="gene ID" value="ASE19_22720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="367541at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004357">
        <property type="term" value="F:glutamate-cysteine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042398">
        <property type="term" value="P:cellular modified amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006336">
        <property type="entry name" value="GCS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016602">
        <property type="entry name" value="UCP012666"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04107">
        <property type="entry name" value="GCS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF012666">
        <property type="entry name" value="UCP012666"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="486" mass="54549" checksum="783FAEB59E5583DE" modified="2016-01-20" version="1">MGDDVAAQEFTPADRTRYREKVRRCLDVFERMLRESAFDTDDPWTGVEVELNLVDEAGDPALRNVEVLDAIDDPEFQTELGQFNIELNLPPGPLADGGLTTCEERLRTSLNAAEERAASVGAHQVMIGILPTLAPEHLTAEAISANPRYRLLSEQILGARGEDIKIDIHGVERLQTTVDTIMPEAACTSTQFHVQVSPERFAAYWNASQAIAGVQLAVGANAPYLLGKHLWAETRIPLFEQATDTRAEELKVQGVRPRVWFGERWITSVFDLFEENVRYFPALLPVIDEEDPLTVLEAGGTPNLSELRLHNGTIYRWNRPVYDISGGLPHLRVENRILAAGPTVVDTVANAAFYFGLVRALADNDRPLWSQMSFSAAEENFHAAAQHGIDAEVYWPGLGRVRATELVVRRLLPLAHEGLAAWGVGEEEAHRYLDVIEQRCLGGTNGADWFVRQMQQRRDEDRYDALRAVLGEYRTRMHENRPVHTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYE5</accession>
    <name>A0A0Q8VYE5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01250</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896660.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59681">
        <property type="protein sequence ID" value="KRC59681"/>
        <property type="gene ID" value="ASE19_01250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2192926at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="88" mass="9219" checksum="F774131DBC762ABC" modified="2016-01-20" version="1">MSNEREERDHGQLSEVASRLSAGLVTPGDSVAGHPVDDDVDEGATGPDALTGDQDDPEEYRATDLDPEAAVDETDDDLDGEVPKGDPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYH9</accession>
    <name>A0A0Q8VYH9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HxlR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01865</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896550.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59789">
        <property type="protein sequence ID" value="KRC59789"/>
        <property type="gene ID" value="ASE19_01865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2057904at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="120" mass="13576" checksum="472E4B2D23D173AE" modified="2016-01-20" version="1">MSDRPWDVMVATCPSRTSLAKIANKWTAMIVIALAEGPLRFGALRETVDGISGKVLTDTLRDLERDGILTRTMYNEMPPRVEYELTALGRTLREPLAALGRWAEEHVETVLRARDEYDSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYW3</accession>
    <name>A0A0Q8VYW3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glycine/betaine ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_00430</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896802.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59538">
        <property type="protein sequence ID" value="KRC59538"/>
        <property type="gene ID" value="ASE19_00430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="785019at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010068">
        <property type="entry name" value="Peri-bd_TauA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015168">
        <property type="entry name" value="SsuA/THI5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30024:SF38">
        <property type="entry name" value="PTHR30024:SF38"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09084">
        <property type="entry name" value="NMT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360498" evidence="2">
        <location>
            <begin position="38"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="3">
        <location>
            <begin position="51"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="353" mass="36577" checksum="CB63E455FE254BC8" modified="2016-01-20" version="1">MKTSRTLSRRIGGLAAVAAVVLPLSACSLGEDTEAAASDCPWTADESVTGTVRIGYQKIPNGDVVVKDQKILENCLPKATIEWNNFASGGDVVQAFGAGSIDIGLAGSSPSTKALSAPLDLPVKVIWIHDVIGEAESLVVRDGVATDITGLKGKTIATPFGSTAHYSLLQAITDAGEDPADYKLINSEPEQIAPAWANGDIDAAWIWDPTLSELEKQGGTVILSSKDTAEAGKPTYDLGLASDTFIEENPKVLEAWAKAQDYAVDQILGDPDKAAESVAVEVGVSTDEAKAQFAGLTYLRASEQATDAWLGEKLGADLLATAQFLLAQDGITAVAPAATYSDGVDADVAASAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZQ9</accession>
    <name>A0A0Q8VZQ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glycosyl transferase family 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_23120</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892535.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58951">
        <property type="protein sequence ID" value="KRC58951"/>
        <property type="gene ID" value="ASE19_23120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="694191at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044249">
        <property type="term" value="P:cellular biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901576">
        <property type="term" value="P:organic substance biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="4">
        <location>
            <begin position="14"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="3">
        <location>
            <begin position="239"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC58951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="424" mass="46589" checksum="A70AD42CD0395D09" modified="2016-01-20" version="1">MRIAMLSYRSKPHVGGQGIYIRRLTRELVALGHTVEVFSGQPYPELDEGVTLTKVPSLDLYRPGDEFRNPRPSEYRDLIDVEEWLTMRSGAFPEPMTFSKRVVKVLKRRVDDFDIVFDNQTLATPLLGVEDLGLPLAATIHHPITMDRRIELAAAVWAKRKAGSKWRFELPKIGVWRWYSFLTEQKRTAPRLRRVVVPSESSKRDVVREFGVDPARIETILLGVDDRFVPPTEPRVPGRILAMASADAPLKGISVLLEAFAKLVVERDLELVLVTKPKAGGVTEKLIDRLGIVDRVSFANGLTDDELVALMGSAELACVPSLYEGFSLPTAELMACETPLVVSRAGAIPEVVGPDGLCADVVEPGDVGALTSAVAALLDDPARRAEMGAAGRRRVKELFSWTAVAASTAAVLEDVIAEYKAEKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM61</accession>
    <name>A0A0Q8UM61_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Gamma-glutamyl phosphate reductase</fullName>
            <shortName evidence="7">GPR</shortName>
            <ecNumber evidence="7">1.2.1.41</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Glutamate-5-semialdehyde dehydrogenase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Glutamyl-gamma-semialdehyde dehydrogenase</fullName>
            <shortName evidence="7">GSA dehydrogenase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">proA</name>
        <name evidence="9" type="ORF">ASE19_19760</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>L-glutamate 5-semialdehyde + NADP(+) + phosphate = H(+) + L-glutamyl 5-phosphate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19541"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58066"/>
            <dbReference type="ChEBI" id="CHEBI:58274"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.2.1.41"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; L-proline biosynthesis; L-glutamate 5-semialdehyde from L-glutamate: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the gamma-glutamyl phosphate reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.41" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895886.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46110">
        <property type="protein sequence ID" value="KRC46110"/>
        <property type="gene ID" value="ASE19_19760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="223669at2"/>
    <dbReference type="UniPathway" id="UPA00098">
        <property type="reaction ID" value="UER00360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004350">
        <property type="term" value="F:glutamate-5-semialdehyde dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055129">
        <property type="term" value="P:L-proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd07079">
        <property type="entry name" value="ALDH_F18-19_ProA-GPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00412">
        <property type="entry name" value="ProA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020593">
        <property type="entry name" value="G-glutamylP_reductase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012134">
        <property type="entry name" value="Glu-5-SA_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000965">
        <property type="entry name" value="GPR_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000151">
        <property type="entry name" value="GPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00407">
        <property type="entry name" value="proA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01223">
        <property type="entry name" value="PROA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0521">NADP</keyword>
    <keyword evidence="6 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 7" id="KW-0641">Proline biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="8">
        <location>
            <begin position="6"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="43233" checksum="AD9294E43D072E49" modified="2016-01-20" version="1">MSAEVAVREVAQRARVASRGLALATRAQKDATLEAMAEALLARAPELLAANAEDVARAEADGTPPNIIDRLRLTDDRLAGMAQGLRDVAGLADPVGEVVRGGVLANGLELRQVRVPFGVVGMIYEARPNVTADAAGICLKSGNAVLLRGSSSARSSNAAIVAVLRDAIAASGLAADVVQLVPGDSHDSVKALMRARGLVDVLIPRGGAGLIQSVVNDSTVPVIETGVGNCHVYVDRAADLDKALPLVLNAKTHRTSVCNAAESLLVHADVADEFLPRVVAALQAAEVTIHGDEAFGGYDGVVAATDEDWGTEYLSLDIAARVVPDLDAALEHIRTWSSGHTDAIVTEDQGAARRFVAEVDSAAVLVNASTRFTDGGEFGFGAEIGISTQKLHARGPMGLPEMTSTKYVVIGDGHVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM66</accession>
    <name>A0A0Q8UM66_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Acetyl-CoA acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_19710</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895880.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46104">
        <property type="protein sequence ID" value="KRC46104"/>
        <property type="gene ID" value="ASE19_19710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="550338at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="5">
        <location>
            <begin position="266"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="2">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="344"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="388" mass="40651" checksum="4B25E631D4BEEA82" modified="2016-01-20" version="1">MNAAVIVDAVRTPLAKGKPGGAYADIHPVDLHAHALRAIVERTGIDPVVIDDVISGAVGQVGEQAGNTARWALLAAGYPESVPGVTVDRQCGSSQQALHFAAQGVMAGAYEVAVASGVESMSRIPIGSQFAGKDFFGPSVNQRYEGRLVPQGISAELIAKKWGLSRAELDEYSALSHERAAQAWKDGLIDSQVAFVNELRTDETIRPGTTAEILAGLRPAFFSDDWAAAHPDLDWRITAGNSSPTNDGAAAVLVTSEDAATRLGLKARARVHSFAVVGDDPVFMLTGIIPATQKVLQRAGLTLDDIDAFEVNEAFASVVLAWQKETGADLDKVNVNGGAISIGHPLGASGARLATSLVNVLEQRGGRYGLQVMCEAGGLANATIIERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMD9</accession>
    <name>A0A0Q8UMD9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895943.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46168">
        <property type="protein sequence ID" value="KRC46168"/>
        <property type="gene ID" value="ASE19_20090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1827044at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="239" mass="25485" checksum="12BEEFB143806624" modified="2016-01-20" version="1">MTTGDRARRLAAARPDGPVPCPVCAEGVNGANLDRHLTKVHGGDDAAAGTTSWRGPERVGSRWLLALGVLAVVVCAVVWGTSGEPDDRLVLGTVGLLAVALVVWGAVGWGAPLFPGRLRVDERGALLRHTYGLGRRRLASLDRVVLGGAWEGRPAGGAGSETYETVDVRVGVYLQLCSGRRRITVHCRTGGVFRRTWTGWEQGARRRSLDITLDRAEFVALQLALWELGHLTPAGGDGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMM0</accession>
    <name>A0A0Q8UMM0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20615</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896021.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46250">
        <property type="protein sequence ID" value="KRC46250"/>
        <property type="gene ID" value="ASE19_20615"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1382593at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012545">
        <property type="entry name" value="DUF1697"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36439">
        <property type="entry name" value="PTHR36439"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08002">
        <property type="entry name" value="DUF1697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="180" mass="19296" checksum="910348796633E0EA" modified="2016-01-20" version="1">MPKYVAFLRAINLGANRKFPKADIVTATEAAGGTDVLTHINTGNVCLTSTLRSRAKVEAALEEAYEAQAGFVVPTIVFTPAELVAIADDARELTAARPDLERHYVYLLKDEPDAARVAEVEARSDEVNAVVVRGRAAHILLGPGYAAGGVDPYKVEKSLAVVATNRNFNVVTTLADKWCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMX8</accession>
    <name>A0A0Q8UMX8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21035</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896096.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46325">
        <property type="protein sequence ID" value="KRC46325"/>
        <property type="gene ID" value="ASE19_21035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2181908at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359228" evidence="1">
        <location>
            <begin position="29"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="93" mass="10062" checksum="83F371A941C6E202" modified="2016-01-20" version="1">MRVRMTAAAAAVLVLAAGCRDTQWPSNADQEAFCDTVASAQLTEGGVDQDLRQLGTPANLPFEARRYLLDLADGHDPVPAEKQVFDTYLADHC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMZ4</accession>
    <name>A0A0Q8UMZ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Polyphosphate kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_21130</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the polyphosphate kinase 2 (PPK2) family. Class I subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896112.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46341">
        <property type="protein sequence ID" value="KRC46341"/>
        <property type="gene ID" value="ASE19_21130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="953793at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008976">
        <property type="term" value="F:polyphosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016898">
        <property type="entry name" value="Polyphosphate_phosphotransfera"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022488">
        <property type="entry name" value="PPK2-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022486">
        <property type="entry name" value="PPK2_PA0141"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03976">
        <property type="entry name" value="PPK2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028756">
        <property type="entry name" value="PPK2_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03707">
        <property type="entry name" value="PPK2_P_aer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PPK2" evidence="4">
        <location>
            <begin position="52"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="296" mass="34604" checksum="8E2015775A31C4DF" modified="2016-01-20" version="1">MLEDVRQYIDRLGIDGHRIGDDHDDDPVLIDPFGKAVDTWRENYPYDERMPREEYDEQKYLLQVELLKFQAWSKATGSKHVIVFEGRDAAGKGGTIKRFMEHLNPRYARVVALTKPSDRESGQWYFQRYVQHLPTAGEISLFDRSWYNRAVVERVMGFVGDEDYETFMRHVPYFEEMLVESGITLTKFWFSVTQAEQRTRFIIRQVDPVRQWKLSPMDLESLDKWQAYTEAKEAMIRRTDTEVVPWTTVKSNDKKRARINAMRAFLANFEYDGKDASVVGAPDPLIVQRGIDAVGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN26</accession>
    <name>A0A0Q8UN26_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Cell division protein FtsX</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_21435</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 10">Part of the ABC transporter FtsEX involved in cellular division.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896166.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46396">
        <property type="protein sequence ID" value="KRC46396"/>
        <property type="gene ID" value="ASE19_21435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1653234at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004513">
        <property type="entry name" value="ABC_transpt_FtsX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040690">
        <property type="entry name" value="FtsX_ECD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47755">
        <property type="entry name" value="PTHR47755"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18075">
        <property type="entry name" value="FtsX_ECD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003097">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="10" id="KW-0132">Cell division</keyword>
    <keyword evidence="6 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="184"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="226"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="286"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX_ECD" evidence="13">
        <location>
            <begin position="57"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="12">
        <location>
            <begin position="213"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00021907"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR003097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF18075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC46396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="313" mass="34062" checksum="C84DF0B63960E1ED" modified="2016-01-20" version="1">MQLRYVFTELRTGLRRNLSMHLAVIVTLFVSLSLAGVGILLQREADIATDQLGTQLQIRVNLCTVDDPSASPNCAGGEVTDPQRERIESEIDASDEVDSFRFETKEEGFAKAKEDPTIPDVAFEGENPVLTLDKWPAAYWVTLKTPDEADGIISALSGLDGVSGIVDQRQTLSQIFGIMKVLKYGSWIGAGFLLFSALLQVGNTIRLAALARRREIGIMRLVGASTLYIALPFLLEALVTAIVGVGLAAGALAAFQYWGVENGLAEHISFLRWVGWKEYGESLVSLFPPGIVILGPALTLIPTLLLTRKYVKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UR99</accession>
    <name>A0A0Q8UR99_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD-dependent dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896036.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46265">
        <property type="protein sequence ID" value="KRC46265"/>
        <property type="gene ID" value="ASE19_20700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="948454at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13460">
        <property type="entry name" value="NAD_binding_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="1">
        <location>
            <begin position="7"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="219" mass="23033" checksum="6A77D2D8E9B9C593" modified="2016-01-20" version="1">MLVAIVGGHGQIARLLHPLVVAQGHTPVALVRREDQRAVLEELGAEVRLLDIESAGVEDFEAAFDGCSAVVFAAGGGPDGNLERKRTVDLEGSLKSIEAASRKGIRRFVQVSAIDVDEPVAADAGEVWAAYVAAKRDSDRALRESRLAWTILRPGRLTDDPATGRVALGPDVPRGPVTRADVAAVLAAVLDRPDTVGQQWNLVGGDVPVDEAVDAAARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8USD1</accession>
    <name>A0A0Q8USD1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22255</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896305.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46537">
        <property type="protein sequence ID" value="KRC46537"/>
        <property type="gene ID" value="ASE19_22255"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="109" mass="12386" checksum="412183EECCEF0FA4" modified="2016-01-20" version="1">MYSKPYDEMTRLEQKMFWAVREGAMLHELPMSEVDNPGSDNEVRWPAEQPEDCAGVLLRWFDEGLVGVMTTEDERDLPSAEARRVLADHEAWSSTHSLFITDSGDAALI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU65</accession>
    <name>A0A0Q8UU65_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 11">Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase</fullName>
            <shortName evidence="11">NN:DBI PRT</shortName>
            <ecNumber evidence="5 11">2.4.2.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 11">N(1)-alpha-phosphoribosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">cobT</name>
        <name evidence="12" type="ORF">ASE19_17520</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 11">Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>5,6-dimethylbenzimidazole + nicotinate beta-D-ribonucleotide = alpha-ribazole 5'-phosphate + H(+) + nicotinate</text>
            <dbReference type="Rhea" id="RHEA:11196"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15890"/>
            <dbReference type="ChEBI" id="CHEBI:32544"/>
            <dbReference type="ChEBI" id="CHEBI:57502"/>
            <dbReference type="ChEBI" id="CHEBI:57918"/>
            <dbReference type="EC" id="2.4.2.21"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 11">Nucleoside biosynthesis; alpha-ribazole biosynthesis; alpha-ribazole from 5,6-dimethylbenzimidazole: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the CobT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.21" evidence="5 11"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893136.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48732">
        <property type="protein sequence ID" value="KRC48732"/>
        <property type="gene ID" value="ASE19_17520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1765140at2"/>
    <dbReference type="UniPathway" id="UPA00061">
        <property type="reaction ID" value="UER00516"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008939">
        <property type="term" value="F:nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02439">
        <property type="entry name" value="DMB-PRT_CobT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1610.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00230">
        <property type="entry name" value="CobT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003200">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017846">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023195">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036087">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02277">
        <property type="entry name" value="DBI_PRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52733">
        <property type="entry name" value="SSF52733"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03160">
        <property type="entry name" value="cobT_DBIPRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 11" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="8 11 12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 11 12" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Proton acceptor" evidence="11">
        <location>
            <position position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00015486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00030686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC48732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="344" mass="34369" checksum="704D8607A85C1DA8" modified="2016-01-20" version="1">MNAIAAPGPAVRSAAAERLAGLATPAGALGRLGELGVWVAAAQGQCPPAPLDNVRLVIFAGDHGVAQHGVSAYPPAITPAMVRTFVLGKAGVSALAAAHGVHVRVLDIGVDDDLEGVPDDVRSHKVRRGSGALHVEDALSAEETTSALEAGRAVAREEIAAGAQLLLSGDMGIGNTTPASAMVAAALGLPAAEVTGRGTGVDDASLLHKQDVVQQALDRAGDRLADPVQTLQAVGSADLAATVGYLLEAAESGVPVLLDGLMSVACALTAERIAPGAAAWFAAGHRSTEPAQSLALEKLGLEPVLDLGLRLGEGSGAVAAVPVLRSAVALLRDVALLADLMPPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU96</accession>
    <name>A0A0Q8UU96_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dihydrofolate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17670</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893160.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48758">
        <property type="protein sequence ID" value="KRC48758"/>
        <property type="gene ID" value="ASE19_17670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1920912at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008703">
        <property type="term" value="F:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002734">
        <property type="entry name" value="RibDG_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01872">
        <property type="entry name" value="RibD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="SSF53597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RibD_C" evidence="1">
        <location>
            <begin position="3"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="195" mass="21162" checksum="B9AF95796F13F3DA" modified="2016-01-20" version="1">MATVMMHAVVSVDGFIADENDEVGPLFDWYFNGDQSLTDGEDHGPFAVTAASAAYVRPMWRSIRAIIQGRRLFDQTNGWEASPPAGEHLLVVSHRPKPEGWHPEADVPFFTDVASAVEEGKRRAGDGVLAICAGEVGGQALAAGLVDVVAMDVVPVVFGRGKRYFGAIEGQHLLEDPEVVVRGDRVLHLSYPVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUD4</accession>
    <name>A0A0Q8UUD4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17990</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893213.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48812">
        <property type="protein sequence ID" value="KRC48812"/>
        <property type="gene ID" value="ASE19_17990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="478143at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="454" mass="48595" checksum="1C2EB5F204A350C1" modified="2016-01-20" version="1">MSESLLPSYDAETIRRLDKAHVFHSWSAQAQIAPLPVTRAEGSFFWDADGTRYLDFSSQLVNVNIGHQHPAIIAAIQEQAGRLATLAPGFGNDVRAEAARLIAEVAPGDLDKVFFTNGGAEANENAIRMARVHTGRHKVLAAYRSYHGATAGAIALTGDPRRWASEPGISGVVRYWGPYLYRSAFHASTEAEECERALSHLRDLVAVEGPQTIAAIVLETVVGTNGILVPPDGYLAGVRALCDEFGIVMIADEVMAGFARCGEWFAVDRWGVVPDLITFAKGVNSGYVPLGGVVISERIAATFADRAFPGGLTYSGHPLACASAVASIQVMREEKVVENARRLGDEVFGPALRALAEKHPSVGEVRGLGAFWALELVRDRTTREPLVPFNASGADAAPMAAFAAACKAEGLWPFVHFNRTHVVPPCTISDEDALAGIAVLDRALDLADEHYTGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUE1</accession>
    <name>A0A0Q8UUE1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17790</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893181.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48779">
        <property type="protein sequence ID" value="KRC48779"/>
        <property type="gene ID" value="ASE19_17790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1942521at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359436" evidence="1">
        <location>
            <begin position="25"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="2">
        <location>
            <begin position="65"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="346" mass="37260" checksum="0CC3FC41716FAE36" modified="2016-01-20" version="1">MRITRAFRRSTALVAGLTTVLALSACGQEDTDQDAGETTQEVTDEFPISIEHAFGTTEIKEEPKRVATWGWGSTEASIAAGVYPVAIAEQIWTVGEGNLLPWVEEAYDAEDVEHPTLLPDDGSGATVPYDEFIAAKPDLILAPYSGITEEQYKKLSEIAPTVAYPEAPWTTTWQDTISITAKALGRSAQGEKVLGDIDSYLADEAKKHPEFADRTIAALYPGPNTISPYTELDPRLAILTKLGFSVAPSIAKLDTSKGGFYYELSWEEADKIDADVAVTYFDDDAQAAAFLKDQKALAIPAVKNGAVAQVVGRERISAVSPPTALSFRWSGGMPELIEKLAAAVAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV42</accession>
    <name>A0A0Q8UV42_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Biotin carboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17855</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893829.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49100">
        <property type="protein sequence ID" value="KRC49100"/>
        <property type="gene ID" value="ASE19_17855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="886663at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034733">
        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011763">
        <property type="entry name" value="COA_CT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011762">
        <property type="entry name" value="COA_CT_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01039">
        <property type="entry name" value="Carboxyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50989">
        <property type="entry name" value="COA_CT_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50980">
        <property type="entry name" value="COA_CT_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA carboxyltransferase N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="domain" description="CoA carboxyltransferase C-terminal" evidence="2">
        <location>
            <begin position="250"/>
            <end position="489"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC49100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="489" mass="51301" checksum="05E3F0F51305228D" modified="2016-01-20" version="1">MLARRFLTTDDARPEKVARWHAKGRRTARENIADLVDPGSFVEYGRFVTAAQEQRRPLAELVVEAPADGIIGGTATVDGRACAVLSYDYLVMAGTQGMRGHRKSDRLIELAGRMGLPTVFFTEGGGGRPGDVDLPLVSALDVGSFALWGELQGVVPRIAVVSGRCFAGNAVIAGCADLRIATPDANLGMAGPAMIAGGGLGQFAAEEIGPVEDQAANGVLDVVVDDEAAAVAVVRRLLGVLHEPDLGTGEPAADQAALRTLLPENDREAFDVRPLVEALADEDSVLWLREAWAPELVTAIVRIDGLAVGVLANQSTALAGALTADASTKAADFLDLCERWQLPVLSLVDTPGFMVGPEAERTGLVREASRMVTAGARLTTPLAGVVLRRGYGLGAQAMLGGSTHRPLLTLAWPGAHLGPMGLEGAVRLAMAHELAALPDGEREAVVAEQTAALRDHAKALNAARVFEIDDVVDPAETRTLVAGTLRRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVQ4</accession>
    <name>A0A0Q8UVQ4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Peptide chain release factor 2</fullName>
            <shortName evidence="4">RF-2</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4 6" type="primary">prfB</name>
        <name evidence="6" type="ORF">ASE19_21455</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="4">Methylated by PrmC. Methylation increases the termination efficiency of RF2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the prokaryotic/mitochondrial release factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896170.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46400">
        <property type="protein sequence ID" value="KRC46400"/>
        <property type="gene ID" value="ASE19_21455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="928964at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016149">
        <property type="term" value="F:translation release factor activity, codon specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00094">
        <property type="entry name" value="Rel_fac_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005139">
        <property type="entry name" value="PCRF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000352">
        <property type="entry name" value="Pep_chain_release_fac_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045853">
        <property type="entry name" value="Pep_chain_release_fac_I_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004374">
        <property type="entry name" value="PrfB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03462">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00472">
        <property type="entry name" value="RF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00937">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75620">
        <property type="entry name" value="SSF75620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00020">
        <property type="entry name" value="prfB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00745">
        <property type="entry name" value="RF_PROK_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0488">Methylation</keyword>
    <keyword evidence="3 4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RF_PROK_I" evidence="5">
        <location>
            <begin position="244"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="modified residue" description="N5-methylglutamine" evidence="4">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS00745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="372" mass="40751" checksum="2298E68745DA90D9" modified="2016-01-20" version="1">MAGPDYDAEIKQLTATMHTIEQVLDLPRMEREIADLGEQVAAPDLWDDQANATRVTGRLSGLQGQVDRFRGLQQRIDDLAVLAELAAEEADADVLAEADGELARIKKAVEGLEVRTLLSGDYDEREAIVTIRSGAGGVDAADFAEMLMRMYTRWAERNKYPVEVYDVSYAEEAGIKSAEFAIHAPYAYGTLSVDAGTHRLVRISPFDNQGRRQTSFAAVEVVPQLEETDDIEVDENDVKVDVYRSGGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQLQNKAAAMIVLKAKLLAKKKAEEAALKKDLKGDVAASWGDQMRNYVLNPYQIVKDLRTGYETGNPQAVFDGEIDGFLEAGIRWRRGADSAADN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWA1</accession>
    <name>A0A0Q8UWA1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Uridylate kinase</fullName>
            <shortName evidence="6">UK</shortName>
            <ecNumber evidence="6">2.7.4.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Uridine monophosphate kinase</fullName>
            <shortName evidence="6">UMP kinase</shortName>
            <shortName evidence="6">UMPK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6 8" type="primary">pyrH</name>
        <name evidence="8" type="ORF">ASE19_19955</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reversible phosphorylation of UMP to UDP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP + UMP = ADP + UDP</text>
            <dbReference type="Rhea" id="RHEA:24400"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.22"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="6">Inhibited by UTP.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 6">Pyrimidine metabolism; CTP biosynthesis via de novo pathway; UDP from UMP (UMPK route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the UMP kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.22" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46145">
        <property type="protein sequence ID" value="KRC46145"/>
        <property type="gene ID" value="ASE19_19955"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00159">
        <property type="reaction ID" value="UER00275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033862">
        <property type="term" value="F:UMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044210">
        <property type="term" value="P:'de novo' CTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04254">
        <property type="entry name" value="AAK_UMPK-PyrH-Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01220_B">
        <property type="entry name" value="PyrH_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011817">
        <property type="entry name" value="Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015963">
        <property type="entry name" value="Uridylate_kinase_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005650">
        <property type="entry name" value="Uridylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02075">
        <property type="entry name" value="pyrH_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 6" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AA_kinase" evidence="7">
        <location>
            <begin position="5"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="10"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>UMP</name>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>UMP</name>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="132"/>
            <end position="139"/>
        </location>
        <ligand>
            <name>UMP</name>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="237" mass="25533" checksum="C4409008F165359B" modified="2016-01-20" version="1">MPGYKRVLLKLSGEVFGGGKVGVDPDVVQAIAREVKAVVDAGVQIAVVTGGGNFFRGAELQQRGMDRVRADYMGMLGIVMNCLALQDFLEKMGVETRVQTAITMGQVAEPYIPRRAIRHMEKGRVVIFGAGMGMPYFSTDTVAVQRALESKCDVVLVAKSGVDGVYSADPKIDPTATKYDELTYDHAIAQGLRIMDQTAFALCGENKLPMIVFGMEPEGNILRVVQGEKIGTRVSAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXR1</accession>
    <name>A0A0Q8UXR1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896390.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46621">
        <property type="protein sequence ID" value="KRC46621"/>
        <property type="gene ID" value="ASE19_20735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1607828at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2010.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010428">
        <property type="entry name" value="Zincin_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038555">
        <property type="entry name" value="Zincin_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06262">
        <property type="entry name" value="Zincin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="134" mass="15123" checksum="9B7237618E260C5E" modified="2016-01-20" version="1">MRGPAVLPLTWPSSEHRPPKPYSRRELFDRILLDVVSEIDARWSDHLGLLEYAVEETPQLPDDWDSARVPLSSLVRGSGATPTRLVVFRRPLEHRAHDRADLEAIILTVVVEQVAELLGIEPADVDPRYPGDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXU7</accession>
    <name>A0A0Q8UXU7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Fe-S cluster assembly protein SufD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15945</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893575.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50108">
        <property type="protein sequence ID" value="KRC50108"/>
        <property type="gene ID" value="ASE19_15945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="422804at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000825">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037284">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011542">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43575">
        <property type="entry name" value="PTHR43575"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01458">
        <property type="entry name" value="SUFBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101960">
        <property type="entry name" value="SSF101960"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01981">
        <property type="entry name" value="sufD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="387" mass="42031" checksum="EF76DD05C6C8ED36" modified="2016-01-20" version="1">MTAEVLEGALEKIESHLHPEGSFDVDAHEVPTGREEIWRFTPLKRLRGIHADAPLAGTSFEASFDAPGNVRADRLADDSLKGVSGLVPWDRISARALAESRTSLAVTIPAEAVLERPVFVTIKGTGTDEATAAHLVIRAEKFSKATVVLRFEGSMTLADNVEIVVEDGAQLAVVSIDDWADDAVHVGHRHVRVGRDAHFKHVDITFGGDVVRHDTTADYAGPGGSVEMLGLYFADAGQHIEHRLFVDHTAPKTKSHVVYKGALQGEKAHTVWIGNVLIRKVAEGIETYEENRNLVLTDGCQADSVPNLEIETGEIEGAGHASATARFDDEQLFYLRSRGISEKEAQRLVVHGFFNDLIRQIGVPELEESLAATVEAELAKNVHAGVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY19</accession>
    <name>A0A0Q8UY19_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_16380</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CdaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893650.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50182">
        <property type="protein sequence ID" value="KRC50182"/>
        <property type="gene ID" value="ASE19_16380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1439158at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041522">
        <property type="entry name" value="CdaR_GGDEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17853">
        <property type="entry name" value="GGDEF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF_2" evidence="4">
        <location>
            <begin position="173"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_30" evidence="3">
        <location>
            <begin position="331"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="395"/>
            <end position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF17853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="44527" checksum="245AF5CFBC19EB91" modified="2016-01-20" version="1">MRVDEVGDVAALGHALLARSDELGAALADAVLAQVPFYAASPTVATGELRASSVEHLRFVFSALTVQQDLDLVAAEETGRQRAAAGVPLPALLAAYRVGFRHIWEHVVAESRAAGADTETLLAATEHAVAAHDAFAHAASAAHAETTADQLVRHQERRTALVDALLGGRIGERAAVWELAGMLGLGVGGPYVAVSVAVPTLGQPALEHLEADLRARDLPSVWLLRPDRQLGLVEVRRADRVAELVARLRQLATTPTGVSSPFEDLTDARDAVRLAESAMGSARTGAGNLVRVFEDSPLALAATGSPEMLQRVARTVFSRLDEQRTGDRDLLLDTLAAWLDAGGSTSHAAEALFLHPNTVRQRLRRLEELTGRSMTDPRQVAELCLALEVRRRWSGERTAPDQPMRTKTVGDRDGQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYF4</accession>
    <name>A0A0Q8UYF4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">T2SSE_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17005</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893763.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50294">
        <property type="protein sequence ID" value="KRC50294"/>
        <property type="gene ID" value="ASE19_17005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="724641at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037257">
        <property type="entry name" value="T2SS_E_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007831">
        <property type="entry name" value="T2SS_GspE_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05157">
        <property type="entry name" value="T2SSE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160246">
        <property type="entry name" value="SSF160246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="487"/>
            <end position="514"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="526"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="559"/>
            <end position="581"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSE_N" evidence="2">
        <location>
            <begin position="37"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="597" mass="63951" checksum="3FB6112127695831" modified="2016-01-20" version="1">MTRLGSQMVRTGLLDPAQLEAALDRQRQQGGYLGQHLVDAGFITREQLHDGLARQWQVDRRDLDRDPPRGDLLERHELRHVIELGWLPCEVVGGRHVVIATSVPPGPDLVDEVADFFPGLAVSFVACTRRDLDRFAVRIDGAPTAVRAVGPRRRLCPPAPVRDLLLGGAAVVVLGCLVGAPPDVLSAAVGGVGVIFLALVVVHLGGLVWWAARASASSSPSTVEPVADVLLPVYSVLVPVSGGAPVLQQVVADLASIDYPRSRLDIVMLVAADDAPTLQAVASHAPPSCVRVVPLERRAFADPVLALDAGLALARGRYVVSVLPGEVLAPDQLRLAVEAFELDLHENLTVRRGRTPLAALRVERREWRNARSFTSGLEMVEEACGLTRAFPWSGRESDLRSDLTSSHCNTRLLRRLGGWHAVATGGGGSSMRVAVLSSVTRCRHRPSVGDLVTRRADELARSIHLAVERARRFRWEPAAGTPRLADVLLGFVTPILVLMYPVAVVAAGCLLLRFDELDAGNLPLGLSGLAAVTVAVLLLTAVTGIGLARRRGRRALGHVLAVPAHWLVHAVAAWYAVLVLLPCRPPMRGSSTVHGGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYH8</accession>
    <name>A0A0Q8UYH8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17500</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893133.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48729">
        <property type="protein sequence ID" value="KRC48729"/>
        <property type="gene ID" value="ASE19_17500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1361974at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005583">
        <property type="entry name" value="YaaA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30283">
        <property type="entry name" value="PTHR30283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03883">
        <property type="entry name" value="H2O2_YaaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="259" mass="27421" checksum="C904C810BF3D39E6" modified="2016-01-20" version="1">MLILLPPSEGKSDPKRGKPLDLAGLSSPELTAARTEVLDALVTLCADDADKAAAVLGLSPGQADLVLRNAGLRGAPTARADRIYTGVLYDALDLETLSAGAKRRATSRLGVASSLFGIVRMGDRIPSYRLSGDVTLPALGPVAGVWREALPSVMTEAIGRGLFVDLRSGMYASFWRPGPDLAKRTATVRVLHEHNGTRKVVSHFNKATKGRIVRALLEDGADPRTPAALAATLERLGWTVEVGEPTRNGTQLDVVVGEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYU9</accession>
    <name>A0A0Q8UYU9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_16885</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893740.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50271">
        <property type="protein sequence ID" value="KRC50271"/>
        <property type="gene ID" value="ASE19_16885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1445898at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="45"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="75"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="99"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="138"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="162"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="193"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="223"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="250"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="270" mass="27119" checksum="A797A89BC09DBD18" modified="2016-01-20" version="1">MSPLELAAVLLAGIGAGTINAVVGSGTLITFPTLLAVGIPPVTANMSNSLGLVPGSVAGAIGYRRELVGQRARIARLLVFSTSGGVVGAFLLLVLPADAFEAVVPVLILLGVALVVLQPRLSRYVAARAARRTEPGEAAAPASLLGPWWVTPAAFATGVYGGYFGAAQGVILMGVLGIGINETLQRLNGVKNVLVAVVNAVAGLIFVVAAELGLFGTDAEVDWLVVAVIAVGAVIGGFLGAAVGRKLPPLVLRGIIVVVGLVAVTVILVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZD9</accession>
    <name>A0A0Q8UZD9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Methylamine utilization protein MauE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_20380</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">May be specifically involved in the processing, transport, and/or maturation of the MADH beta-subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">One-carbon metabolism; methylamine degradation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895986.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46215">
        <property type="protein sequence ID" value="KRC46215"/>
        <property type="gene ID" value="ASE19_20380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1721242at2"/>
    <dbReference type="UniPathway" id="UPA00895"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030416">
        <property type="term" value="P:methylamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009908">
        <property type="entry name" value="Methylamine_util_MauE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07291">
        <property type="entry name" value="MauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="48"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="76"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="domain" description="MauE" evidence="11">
        <location>
            <begin position="10"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00019078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF07291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC46215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="164" mass="16447" checksum="DC4EAFEE7F6FC9C9" modified="2016-01-20" version="1">MKGSLAWVGLLARLVTGGVWIVAGALKITEPDASIAAVRAYQLLPSSVAEAVGIALPGLEVVVGLALVLGVLARGAAALSSLLFVAFIIGIASVWARGIEIDCGCFGGGGADPGASSAYPWEIARDVALLAASLLVAWLPRTRLALDSLLFVPRAAGAAEGDGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1V5</accession>
    <name>A0A0Q8V1V5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15335</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51454">
        <property type="protein sequence ID" value="KRC51454"/>
        <property type="gene ID" value="ASE19_15335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="61" mass="6815" checksum="C5651065F91D261B" modified="2016-01-20" version="1">MAGTLRVGEDELEMIVADGRAYARTPGEERCRFLSRDACRTGAGTSTSRRHRPLWSTCVEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V593</accession>
    <name>A0A0Q8V593_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Lytic transglycosylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_09275</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C40 family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the transglycosylase Slt family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894558.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52620">
        <property type="protein sequence ID" value="KRC52620"/>
        <property type="gene ID" value="ASE19_09275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1444566at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008933">
        <property type="term" value="F:lytic transglycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000270">
        <property type="term" value="P:peptidoglycan metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000064">
        <property type="entry name" value="NLP_P60_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000189">
        <property type="entry name" value="Transglyc_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008258">
        <property type="entry name" value="Transglycosylase_SLT_dom_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00877">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01464">
        <property type="entry name" value="SLT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51935">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00922">
        <property type="entry name" value="TRANSGLYCOSYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359713" evidence="3">
        <location>
            <begin position="32"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="domain" description="NlpC/P60" evidence="4">
        <location>
            <begin position="49"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="316" mass="32570" checksum="599F71DF67029674" modified="2016-01-20" version="1">MSIDNVTARIASIQAQLARFTTTSATTSASADFSTALATATGAAGDANGITGQDVVAEAKKYLGLPYVWGGTSKERGVDCSGLVQQVYKALGYELPRVSADQARSGTPVASLAQAQPGDLLAWDNSSRNNGADHIAIYIGDGKMIEAPRTGLNVRIVDVPSDPDIIRRVLRTDAAASGVGGTTGGIAARVGSSTPYADLINRAAARTGVPGELLAAVAKQESGFDPKAVSPAGAQGLMQLMPGTARSLGVTNSFDPAQAIDGGARLLRSLLDKFGTPELALAAYNAGPGAVSRYDGIPPYRETQNYVRNIMAMVRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V645</accession>
    <name>A0A0Q8V645_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">T2SSE_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10725</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52876">
        <property type="protein sequence ID" value="KRC52876"/>
        <property type="gene ID" value="ASE19_10725"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037257">
        <property type="entry name" value="T2SS_E_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007831">
        <property type="entry name" value="T2SS_GspE_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05157">
        <property type="entry name" value="T2SSE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160246">
        <property type="entry name" value="SSF160246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="168"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="460"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="502"/>
            <end position="522"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="534"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSE_N" evidence="2">
        <location>
            <begin position="19"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="563" mass="59853" checksum="D353F32F4BA50902" modified="2016-01-20" version="1">MDWAVERQRQRGGQVGQHLIDAGLISAEDFHAALARAWRHGRRDLVAAPPHPALLAEIDVERAVELGWLACELTDDGRVVVASAVPPTEDLVVEVLEVFPDREVGFVACTQHDLDRVALDVRLNRIGDRASGSVPGPVRPVHWCLAVAGALLAAVGALVLPLGALGVVLLVASVVFLVGGVIQAATGYTLLAEDARTAHRLPEGSPGDEEADRDLPLYTVIVRVGGGAAGLEELFDNFRAVDYPRERTDAILVVARGDTATVGALRGTNPRGWVRVARVPDADFLDVVRACDHALALARGRYVVAYDQDERPAPDQLRRAVAVFEADLAARLEGRLAPSPLVGLRVERTVSPGGPGADVVLHVAGAGGPLRSSDVTSVHFNMRLLRRYGGFGLLLDRRGRSAAGEPPLRVETLDSWSTRAAQARDRHWMAHRADVLERELAETVATLRRGSPSWPALREIVAGTGSVALVLSYPVVLGGGLVAALRSTVLDGSLAERAARVALGEVALVVAIATVVAASVLVRRRGWRAGLDAVALPALWVLDGFAAWAAVHALLHRAVARRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V670</accession>
    <name>A0A0Q8V670_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Barbiturase</fullName>
            <ecNumber evidence="3">3.5.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Barbituric acid hydrolase</fullName>
            <shortName evidence="3">BAH</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_10905</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Responsible for the hydrolysis of barbituric acid (2,4,6-trihydroxy-1,3-pyrimidine), an intermediate in the oxidative catabolism of pyrimidines. Catalyzes the hydrolytic opening of the pyrimidine ring of barbituric acid to yield ureidomalonic acid.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>barbiturate + H2O = 3-oxo-3-ureidopropanoate</text>
            <dbReference type="Rhea" id="RHEA:18653"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58775"/>
            <dbReference type="ChEBI" id="CHEBI:77938"/>
            <dbReference type="EC" id="3.5.2.1"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="3">Inhibited by cyanuric acid.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Pyrimidine metabolism; uracil degradation via oxidative pathway; malonate and urea from uracil: step 2/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotetramer.</text>
    </comment>
    <comment type="domain">
        <text evidence="3">The monomer structure is formed from three repeating units (RUs) that share the same structure as one another. The monomer and the active site possess nearly threefold rotational symmetry, to the extent that the active site possesses three potential Ser-Lys catalytic dyads, but one of the 3 active site surfaces varies in composition suggesting it is involved in confering substrate specificity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the cyclic amide hydrolase (CyAH) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.1" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894840.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52908">
        <property type="protein sequence ID" value="KRC52908"/>
        <property type="gene ID" value="ASE19_10905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="984718at2"/>
    <dbReference type="UniPathway" id="UPA00582">
        <property type="reaction ID" value="UER00644"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047694">
        <property type="term" value="F:barbiturase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006212">
        <property type="term" value="P:uracil catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01989">
        <property type="entry name" value="Cyc_amidohydrol"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014086">
        <property type="entry name" value="AtzD/Barbiturase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043008">
        <property type="entry name" value="AtzD/Barbiturase_RUA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043006">
        <property type="entry name" value="AtzD/Barbiturase_RUB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043007">
        <property type="entry name" value="AtzD/Barbiturase_RUC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09663">
        <property type="entry name" value="Amido_AtzD_TrzD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02714">
        <property type="entry name" value="amido_AtzD_TrzD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="RU A" evidence="3">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="82"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="230"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="region of interest" description="RU C" evidence="3">
        <location>
            <begin position="253"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="347"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="3">
        <location>
            <position position="230"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="301"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>structural</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="328"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="350"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>structural</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="353"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>structural</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="354"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>structural</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="355"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>structural</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="358"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>structural</note>
        </ligand>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="3">
        <location>
            <position position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="368" mass="38854" checksum="FBA9DBF12B5CDA0F" modified="2016-01-20" version="1">MPAAIEVRKVPIHSVADASELATLIDDGVLAADRVIAIIGKTEGNGGVNDYTRIIADRAFREVLVAKGAPADQVKQVPIVWSGGTDGVISPHATIFATVDVPEDDPSRAEQRLTVGFAMSEPILPEEIGYVAMIEKVAAGVKVAMERAGITDPSDVHYVQTKTPLLTIHTIRDAHSRGQQVWTEHTHESMDLSNGVTGLGIAVALGEIEMPTDADVMKNRDLYSSVASCSSGVELDQAQIVVVGNAAGVGGRYRIGHSVMKDALDQDGIWEAIRSAGLDLPERPRTADLDGRLVNVFLKCEVSQDGQVRGRRNAMLDDSDVHWHRQIKSCVGGVTAAVTGDPAVFVSVSAAHQGPDGGGPVAAIVDLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V673</accession>
    <name>A0A0Q8V673_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">AsnC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_16075</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893596.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50128">
        <property type="protein sequence ID" value="KRC50128"/>
        <property type="gene ID" value="ASE19_16075"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1844486at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019885">
        <property type="entry name" value="Tscrpt_reg_HTH_AsnC-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13404">
        <property type="entry name" value="HTH_AsnC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00519">
        <property type="entry name" value="HTH_ASNC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="146" mass="15994" checksum="F9AA016EE46E2083" modified="2016-01-20" version="1">MDPLDRQIVDVLLRDGRATFQEIGDAVGLSAPAAKRRVDRMRERGEIAGFTALIDPAALGWDTSAYVELSYQGNVSADRLKRDLEAFPEVIGAWTITGDADALVHVVAASMADLERVIEGIRAVDQVDRSRTVVVMSRLFERPLNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6I2</accession>
    <name>A0A0Q8V6I2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15770</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893545.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50077">
        <property type="protein sequence ID" value="KRC50077"/>
        <property type="gene ID" value="ASE19_15770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2071864at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="100" mass="11272" checksum="215D5BFC797C4727" modified="2016-01-20" version="1">MASFVPTSEETLADFRHYTEERLVEVACLDCLARVRVKKNSEHQTSVQWTGQSQADCQEFQRRGDSPARRDVHKPCPRLMASIDDAVRAGDVPIGAYDGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6K1</accession>
    <name>A0A0Q8V6K1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10705</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894805.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52872">
        <property type="protein sequence ID" value="KRC52872"/>
        <property type="gene ID" value="ASE19_10705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1439158at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_30" evidence="1">
        <location>
            <begin position="333"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="43089" checksum="0891563A9320452A" modified="2016-01-20" version="1">MPRRVLRRPRSDESVLLPHETVVAIRSELAAVADDVVDQIIREVPPYEDAFSGPMGETIRGAVQVALGGFLSLISDRRGPDALAPRSSAVDGAYQLGRGEVRSGRTTDALLSAYRIGARVSWQHLSAKAVEQGIGPATMASFAELVFAYIDELSAASVAGHRDESATEGRLRQRMAERLARHLITGAPEATLLASAERAEWTPPTTLTAVIVPESQAGSLLRALRRGTLLTADLPDLDGAALLMVPDAHDRGRAVLLRAVRDREALVGPPRPWLDVRESYDRVVRARALGLTGDTEQHLPRLVLTADPEALADLRAVVLAPLAELRPAAAEKLRETLRAWLLHQGRRDDVAAALFVHPQTIRYRMTQLRELYGDRLEDPDTVLALTLALGMEEDGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6X8</accession>
    <name>A0A0Q8V6X8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-methyladenine DNA glycosylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15795</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893549.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50081">
        <property type="protein sequence ID" value="KRC50081"/>
        <property type="gene ID" value="ASE19_15795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1835478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008725">
        <property type="term" value="F:DNA-3-methyladenine glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005019">
        <property type="entry name" value="Adenine_glyco"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03352">
        <property type="entry name" value="Adenine_glyco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="202" mass="21882" checksum="AC0F6E92475B0177" modified="2016-01-20" version="1">MTNVLPGPDGLFRCPWAVSAPEFPAYHDAEWGFPVVDDQRLFEKVSLEGFQSGLSWRTILVKRPDFRAAFAAFDPAVVAGYDDTDVARLLADAGIVRHRGKIEAVINNAGRALDLVEEKGSLAAYFWSFEPPLAELGEPQTLTTSPAAIAMSKDLKKRGWKFVGPTTAFAFMQAMGLVNDHVVGCVTRAEVAAARAAFTPPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V761</accession>
    <name>A0A0Q8V761_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nucleosidase</fullName>
            <ecNumber evidence="2">3.2.2.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16770</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.1" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893893.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50365">
        <property type="protein sequence ID" value="KRC50365"/>
        <property type="gene ID" value="ASE19_16770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1860206at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008477">
        <property type="term" value="F:purine nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009116">
        <property type="term" value="P:nucleoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="SSF53167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PNP_UDP_1" evidence="1">
        <location>
            <begin position="23"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="182" mass="19067" checksum="98588FD12A773607" modified="2016-01-20" version="1">MPRHLVVSATAAEAAHLPAGLEVLVTGIGKTAAATALARRLAAESSLADLVVVNLGTAGALHDHVDGLFEIGTVLNHDINADAIRALGYDPRERLAIGASEVVLATGDVFVTDPVVRERLSAQAQLVDMEGYAVAYVAAEFGVPVRMMKHVSDNADETALEWVALVDRSARVLGEWAAAHLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7D8</accession>
    <name>A0A0Q8V7D8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_19175</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49015">
        <property type="protein sequence ID" value="KRC49015"/>
        <property type="gene ID" value="ASE19_19175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1303270at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="42"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="368"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="75"/>
            <end position="82"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC49015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="405" mass="44349" checksum="0F019B97AD65F7BE" modified="2016-01-20" version="1">MTNETMAEIPMPEVPQGHGATAADPTAKPILEVDRLRMYFPVKSSGLVRRTVGHVQAVDGVSFQLPEGGSLGLVGESGCGKSTTGRLITRLYKPTGGSIRFEGRDIAQAKPRELKPLRREIQMIFQDPYTSLNPRQTVGSIVGAPLEIHKVVPKDKVLPRVQELLEIVGLNPEHYNRYPHEFSGGQRQRIGIARALTLQPKVLVADEPVSALDVSIQAQVINLLQDIQREFGVAFLFIAHDLAIVRHFCPEVAVMYLGKIVEIGDRDSIYGNAHHPYTQALLSAVPDVRQAASGKRIERIRLQGDVPSPIDPPSGCRFRTRCPIAQEICAKHEPPLMQIGRRHKVACHFPGRLGEAPREPLTTGLLGVDGEGRPDPGASPSNDLVEQPGYADTWFDLDAKSIGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7I7</accession>
    <name>A0A0Q8V7I7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glycosyl transferase family 8</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13710</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897105.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53397">
        <property type="protein sequence ID" value="KRC53397"/>
        <property type="gene ID" value="ASE19_13710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1926714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="8"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="251" mass="26742" checksum="31A4B4AE4FBB6A9F" modified="2016-01-20" version="1">MEQKPPAIQVSDLRKSYDGQTVLDGVDLAVPAGSVYALLGSNGAGKTTTVRILATLLRADAGTATVHGHDVATAPGKVRESISLTGQFAAVDEILTGRENLVLVARLRHLPDPHRVADALLTKFDLVEAGGKRVASYSGGMRRRLDIAMSLIGEPPVVFLDEPTTGLDPQARLEVWRTVKDLAGAGTTVLLTTQHLEEAEHLADRIGILHGGRILVEGTLAELKALLPPAEVEYVEKQPSLEDVFLSLVGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7J1</accession>
    <name>A0A0Q8V7J1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">GRAM_POS_ANCHORING domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_12350</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895090.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53163">
        <property type="protein sequence ID" value="KRC53163"/>
        <property type="gene ID" value="ASE19_12350"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019931">
        <property type="entry name" value="LPXTG_anchor"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00746">
        <property type="entry name" value="Gram_pos_anchor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0134">Cell wall</keyword>
    <keyword evidence="3" id="KW-0572">Peptidoglycan-anchor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0964">Secreted</keyword>
    <keyword evidence="2 5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359780" description="GRAM_POS_ANCHORING domain-containing protein" evidence="5">
        <location>
            <begin position="34"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="domain" description="GRAM_POS_ANCHORING" evidence="6">
        <location>
            <begin position="393"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="271"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="327"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="277"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="4">
        <location>
            <begin position="340"/>
            <end position="368"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="433" mass="45083" checksum="3DF3AEF2E337A28B" modified="2016-01-20" version="1">MNPRHLPRFVIAPVALAAAAVVGFGPSAGAVEAACGQPGTPAVYDTVQHPAVVTAVPAVTHLEWRWERTVPTTEVEYSRVTAAAQGTWTWSRSVDVLEREYVRTVVDRAAAPAVDEQSHVETRVVVPAVVSVLWEYVQQQTGNTRWEVEGWNAGNGGKGWSPTGATQEVEVTPAQTEQVTVVDVPGVPAVTELSHVEHTWVQGGDAAPVGSTATGATRVAGSVLDDVELPDGETPAGDGWVRGEWTQTAAAQTEEIWLLEGDLAPDGYDATGHTRAGTPAVGQTTETSATAPAGDGWAPVAGSETTVEDAAAYDREDEPAWTELVLVTPEVPATDDCPTEPTDGDGDPEDTDEPGDTDEPAVEEPAEEDLLDGDVVVDQEEGEVLGVVESRTPAADALPATGAGAEPWMLGLGAASVLAGLGLVRGRGKHAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V802</accession>
    <name>A0A0Q8V802_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53468">
        <property type="protein sequence ID" value="KRC53468"/>
        <property type="gene ID" value="ASE19_14110"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359788" evidence="1">
        <location>
            <begin position="32"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="316" mass="33737" checksum="F097D0C74F586485" modified="2016-01-20" version="1">MHVTTSLARRLAVLLALVIGIVAGTGPAANAAYYNEYSDVAATPNVSSTTAVQAFAAGSTYLYSVKTGLDDTRAVIYRVNKSSGARTVMTNATSGSSYNTWLGHANDMTIVDIAGVHHLFVVTMKGSGAQLVKLKYDGTRYWKVGSYQLRLDGAVAKASGISVVSASSTKVNFFLKSGRSVYRGSLGATATSGTVHLARAFTLSITGARVNGATVSDLGTFANQGFFYDRTRKVVYYPLTKENRSIVLVYRGIDWATSGTRTAATDLSFRITSSRYSKFEIEGVGISGTRLYFNTNRSNANGSYDGVHVFKGYAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V839</accession>
    <name>A0A0Q8V839_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_13630</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the DyP-type peroxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53382">
        <property type="protein sequence ID" value="KRC53382"/>
        <property type="gene ID" value="ASE19_13630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="837319at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006314">
        <property type="entry name" value="Dyp_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04261">
        <property type="entry name" value="Dyp_perox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01413">
        <property type="entry name" value="Dyp_perox_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51404">
        <property type="entry name" value="DYP_PEROXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359794" evidence="5">
        <location>
            <begin position="22"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="30"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00025737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="385" mass="39895" checksum="A62F241B1D1D7A4B" modified="2016-01-20" version="1">MPSRRQVLFGGAALAVGAAAAETTRAVIDAPSPAADPAPAEGSSSTAAAGRTQAGVDRPVPPLAHLHLHALTAPASVRTREAIGALLAGLGERVLALVASAQAGPAGEAAGDLTIQVGIGSELLALAELADAPDVLLPQFRGSAALADDRRGGDLFLQVAAERPELVNGTVDALLAALPGFTPRWSQVGYRPLGDGAVTRNPFGYEDGIVQPTTDKGVPEHVWLTDGPLAGATVGVVRRFVLDTAAFHRLPAAEQDGVFGRERVSSVPLSGGAPRADVNLGAKSPSGAYLVPVDSHARAAHPSFVDVTVMLRRGYGFRETVDGAADRSGLLFISYQDDITVFTRTQQRMDRTDRLMELATPTAEAGFLVLPGFDRDRPLGSSLFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V884</accession>
    <name>A0A0Q8V884_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13810</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897086.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53416">
        <property type="protein sequence ID" value="KRC53416"/>
        <property type="gene ID" value="ASE19_13810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1963835at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359800" evidence="2">
        <location>
            <begin position="22"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="122"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="153"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="19067" checksum="77D357DFBD49E4E0" modified="2016-01-20" version="1">MKPLQAVALGLVLLALGPADAAPGTFDPLPDPLGWFLVLVGLHGLGPSLDPRRLPTLRFVGALALVVSVAMVVPAVARWLETDPSLGWSADVPRFAFFALLCHELSQAALRARATAGASSFSIAGLVLLFVIAAPPLAFGADLDGVGTAGEVAAQAVQIALVILCFVFSGRAWAGAPEPELEAPAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8B9</accession>
    <name>A0A0Q8V8B9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Transport permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_13705</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ABC-2 integral membrane protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897106.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53396">
        <property type="protein sequence ID" value="KRC53396"/>
        <property type="gene ID" value="ASE19_13705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1891092at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC_2_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006648">
        <property type="entry name" value="DrrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51012">
        <property type="entry name" value="ABC_TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="27"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="59"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="102"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="136"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="170"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="226"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="domain" description="ABC2_membrane" evidence="9">
        <location>
            <begin position="10"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU361157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="253" mass="26953" checksum="ABFEB9634C476261" modified="2016-01-20" version="1">MSNAFLHDTAALTGRSLRHVLRSPDTIITTAITPVAMLLLFVYVFGGAIDTGGVDYVDYLLPGILLVTVASGIAYTAYRLFMDVSGGIFERFQSMPIARSAALWAHVLTSVVANVIALVLVVLVALLMGFRSGAGVLAWLGVAGILVLFTLTLTWLAVIPGLTAKSADAVGGFSYPLIFLPFVSSAFVPTAGMPGPVRWFAEHQPVTAIVDTLRNLYAEQPVGDDIWVALAWCAGLLVVAYLLAMRAYHRAIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8X1</accession>
    <name>A0A0Q8V8X1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_06775</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895228.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53797">
        <property type="protein sequence ID" value="KRC53797"/>
        <property type="gene ID" value="ASE19_06775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1058434at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030296">
        <property type="entry name" value="MlaF/Mkl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43023:SF6">
        <property type="entry name" value="PTHR43023:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="21"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="53"/>
            <end position="60"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="267" mass="29141" checksum="6A67A30858062F82" modified="2016-01-20" version="1">MTAVLPHAEQAAQSAGPQHTIQVRDVYKSFGSSHILNGLSLDFQDDAITTVLGPSGTGKSVLLKHIVGLLEPDAGEVRVFGTDIWGVSEEERFELRKRFGVLFQDGALFGSMNLYDNVAFPLRRHTDMPESDIREIVMSNMIEVGLEKAIHKAPNEISGGMRKRAGFARALVLKPDVVLFDEPDSGLDPVRTKLLSHLIQKVHAEHGGTYIVITHDIPTARTVSDYVAVIWKGKVVHYGDADGAFNSDNPFVRQFLAGAAEGPLGMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V954</accession>
    <name>A0A0Q8V954_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Microcompartment protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895309.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53877">
        <property type="protein sequence ID" value="KRC53877"/>
        <property type="gene ID" value="ASE19_07280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1374667at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031469">
        <property type="term" value="C:bacterial microcompartment"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1710">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044870">
        <property type="entry name" value="BMC_CP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037233">
        <property type="entry name" value="CcmK-like_sf"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51931">
        <property type="entry name" value="BMC_CP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BMC circularly permuted" evidence="1">
        <location>
            <begin position="13"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="BMC circularly permuted" evidence="1">
        <location>
            <begin position="115"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="215" mass="23121" checksum="5B1444CA2FDE3D3E" modified="2016-01-20" version="1">MAATDARAELRVYLMVEDLQPQFAAYLGTPTRARGYPPYAGDHALIIEVAPALAIERVIDLALRAAPSVEPGILFVERQFGVLELHASTLEDVVAAGQAVLDGTGSSASDQLRPRVLYHDIIESITDQHAVILNRNRSGSMIMPGQSLLVYEMAPALFAAVAANEAERAAPGITMVDVQFIGAAGRLYLSGSTEDVEVARDRITKVLESIEGREH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9B9</accession>
    <name>A0A0Q8V9B9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">YCII domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14605</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the YciI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53695">
        <property type="protein sequence ID" value="KRC53695"/>
        <property type="gene ID" value="ASE19_14605"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005545">
        <property type="entry name" value="YCII"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03795">
        <property type="entry name" value="YCII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YCII" evidence="2">
        <location>
            <begin position="3"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="95" mass="9997" checksum="2491AA9B5379F970" modified="2016-01-20" version="1">MEEAFAATGAFNDRLKAEGYWVFAGGLLEATTATVVDGTGDTPVMTDGPYLETKEAIGGFWVIDAPDLDVALRLAAEGSKACRGKVEVRPFEGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9I5</accession>
    <name>A0A0Q8V9I5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SGNH_hydro domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07200</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895296.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53864">
        <property type="protein sequence ID" value="KRC53864"/>
        <property type="gene ID" value="ASE19_07200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1247435at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01823">
        <property type="entry name" value="SEST_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037460">
        <property type="entry name" value="SEST-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37981">
        <property type="entry name" value="PTHR37981"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359827" description="SGNH_hydro domain-containing protein" evidence="1">
        <location>
            <begin position="26"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="domain" description="SGNH_hydro" evidence="2">
        <location>
            <begin position="38"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="30548" checksum="F123FE956BF68B3B" modified="2016-01-20" version="1">MTRLATRFVVLSTAGLLLSGCLVSGKDDDSPDKRNYVAMGDSYAAAPGVGRANPPLGCRKSKDNYPHKLADAADLDLTDVTCSGAPTEAVMTAYNALGDEVAPQIEAVDEDTDIVTIGLGFNDLGLSLKVFVACVQVTTRNPGATSPCTDADRNLGANGTQAILDQVTDRLKVVVEEVTERAPDARVFLVGYPTIFPTGATCPNLGMNAGDMPLMNHIVSSLNTSLKDAAAAYDATYVDLATPTVGHDVCSDDPWVAGLQPVGGRKAMSWHPYEDEQELAADTLAKLIGSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Q1</accession>
    <name>A0A0Q8V9Q1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Phosphate-specific transport system accessory protein PhoU</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_14950</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Plays a role in the regulation of phosphate uptake.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the PhoU family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896456.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51389">
        <property type="protein sequence ID" value="KRC51389"/>
        <property type="gene ID" value="ASE19_14950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1648549at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030643">
        <property type="term" value="P:cellular phosphate ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045936">
        <property type="term" value="P:negative regulation of phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028366">
        <property type="entry name" value="P_transport_PhoU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038078">
        <property type="entry name" value="PhoU-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026022">
        <property type="entry name" value="PhoU_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42930">
        <property type="entry name" value="PTHR42930"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01895">
        <property type="entry name" value="PhoU"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003107">
        <property type="entry name" value="PhoU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02135">
        <property type="entry name" value="phoU_full"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="PhoU" evidence="4">
        <location>
            <begin position="20"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="domain" description="PhoU" evidence="4">
        <location>
            <begin position="122"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR003107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC51389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="217" mass="23687" checksum="7B4A40D30160F003" modified="2016-01-20" version="1">MRDAYTDELDAIFDDLAAISRQVQVAVKDATKALLTGDSSIAERVISADAEIDRAREKVEENAFSLLSLQAPVAGDLRTVVAALRMVAELERMGDLSVHVAKVARLRVPDIAIPTDVRPTMERMAAVAEDMVSRVTQVIADRDVEAAIALGRDDEEMDQLRRTSFTELLSDDWNHGVEAAVDIALLGRYYERIADHAVSVANRVVFVVTGHHPAPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9T6</accession>
    <name>A0A0Q8V9T6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51424">
        <property type="protein sequence ID" value="KRC51424"/>
        <property type="gene ID" value="ASE19_15175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1483891at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="317"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="338" mass="38183" checksum="3832704DC91752E0" modified="2016-01-20" version="1">MGVRRCGHAAGMDILDSFHGSPFTAAMAMERGLSRDRLRDLLAHGLVRQPLHSVYVAAAEPDTLVLRAKAAALVLPEHAVVCDLCAAWLHGVDLLDFAELDLVPRLDVVSTDGHEGSRRPEVFGGKRDLRADEIMMVHGVRVTTPVRTVCDIARLRGRLRALAALDEFRRVHGISEQELRAMLPRFVRHRGVIQLRELIPLSTDKADSQAESWIRLIIHDAGLPLPEPQVWSLLPEWGRVRTENAYAHLRIAVEYDGEEFHTSEEDREHDRLRRDALRRAGWIVIVVRKDGLGEQARAVWLQELVAAMASRAPADKAKRIYSRGPDHPSYRRRKARDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Y6</accession>
    <name>A0A0Q8V9Y6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Nucleoid-associated protein ASE19_08315</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08315</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the YbaB/EbfC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895490.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54058">
        <property type="protein sequence ID" value="KRC54058"/>
        <property type="gene ID" value="ASE19_08315"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043590">
        <property type="term" value="C:bacterial nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1310.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00274">
        <property type="entry name" value="DNA_YbaB_EbfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036894">
        <property type="entry name" value="YbaB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004401">
        <property type="entry name" value="YbaB/EbfC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33449">
        <property type="entry name" value="PTHR33449"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02575">
        <property type="entry name" value="YbaB_DNA_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82607">
        <property type="entry name" value="SSF82607"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00103">
        <property type="entry name" value="DNA_YbaB_EbfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="17"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="133" mass="13044" checksum="1E1E398A02BACB83" modified="2016-01-20" version="1">MSQNPFDALGGGGGLDLNALLQQAQQMQEQLVGAQQQLAEATVDGSVAGGAVTVTITGAGELTAVKIAPEALDGTDADALADLGDLVVAAFRDARTKADALAEELIGPFGALPDMGGLPGLGGPGQASGQLGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA09</accession>
    <name>A0A0Q8VA09_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07595</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895366.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53935">
        <property type="protein sequence ID" value="KRC53935"/>
        <property type="gene ID" value="ASE19_07595"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="80" mass="8886" checksum="037328619E511587" modified="2016-01-20" version="1">MKRTYRGDRPLVAGREGPGKNGGAFGIRSLRKRVAELERKKAAGGLTRTESVALQRFKQVLPPDREAEIRLALGLNEQEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA57</accession>
    <name>A0A0Q8VA57_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Inorganic pyrophosphatase</fullName>
            <ecNumber evidence="5">3.6.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Pyrophosphate phospho-hydrolase</fullName>
            <shortName evidence="5">PPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ppa</name>
        <name evidence="6" type="ORF">ASE19_08090</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>diphosphate + H2O = H(+) + 2 phosphate</text>
            <dbReference type="Rhea" id="RHEA:24576"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="EC" id="3.6.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.1" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895638.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54206">
        <property type="protein sequence ID" value="KRC54206"/>
        <property type="gene ID" value="ASE19_08090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1767807at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004427">
        <property type="term" value="F:inorganic diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006796">
        <property type="term" value="P:phosphate-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00412">
        <property type="entry name" value="pyrophosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00209">
        <property type="entry name" value="Inorganic_PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008162">
        <property type="entry name" value="Pyrophosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036649">
        <property type="entry name" value="Pyrophosphatase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10286">
        <property type="entry name" value="PTHR10286"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00719">
        <property type="entry name" value="Pyrophosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50324">
        <property type="entry name" value="SSF50324"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="18487" checksum="44BBBD375D769129" modified="2016-01-20" version="1">MEFDVLVEIPKGSRNKYEVDHESGRMRLDRFLFTSTMYPADYGYIEDTLGQDGDPLDALVLLQEPTFPGCLIKCRAIGMFRMTDEAGGDDKVLCVPAGDPRMEHLRDINHVPNFDRLEIQHFFEVYKDLEPGKSVEGADWVGRAEAELEIQASFERFKVDGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA76</accession>
    <name>A0A0Q8VA76_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08795</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895572.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54140">
        <property type="protein sequence ID" value="KRC54140"/>
        <property type="gene ID" value="ASE19_08795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="816674at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002397">
        <property type="entry name" value="Cyt_P450_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00359">
        <property type="entry name" value="BP450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="429" mass="47916" checksum="861D748BEF899582" modified="2016-01-20" version="1">MTVTENATEDSAPEVTVPRTFHPDSISELSFWAQTAEEREVTFKKLRAEAPISWHRPIEGALIPSENEGVWVVTSHALIQEVSKRTDLFCSGQGFQMEEVPEDVNEAAGSFLGMDAPRHPVIRRLVSSAFTPKRVKTIEDQIKRQAHDIVTNLLANPEGDFVDVVSKRLPMWTIYEMIGLTDVEKRLEAAHHADGMVSWADEEVAAGREPGEVLNESLVGLLMMGMELAEERRNNPQDDLMSGLVNAEVDGKKLTDDEIGAFFVLLSVAGNDTTRNSISLTTRALQQFPEQKALLLEDYQGRIGTAIEEFVRWASPVMTFRRTATQDTVLGGAQVREGDWIAMMYSSGNRDESVFENADRFDVLRDPNPHVGFGGGGPHFCMGNFVAKIQLREIFDNLLHRAPTLEVGEPEYLVGNFVRAVKRMPYTLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAA3</accession>
    <name>A0A0Q8VAA3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-dependent zinc metalloprotease FtsH</fullName>
            <ecNumber evidence="5">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ftsH</name>
        <name evidence="9" type="ORF">ASE19_08065</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">In the C-terminal section; belongs to the peptidase M41 family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">In the central section; belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895452.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54020">
        <property type="protein sequence ID" value="KRC54020"/>
        <property type="gene ID" value="ASE19_08065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="190468at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030163">
        <property type="term" value="P:protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01458">
        <property type="entry name" value="FtsH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041569">
        <property type="entry name" value="AAA_lid_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005936">
        <property type="entry name" value="FtsH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000642">
        <property type="entry name" value="Peptidase_M41"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037219">
        <property type="entry name" value="Peptidase_M41-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17862">
        <property type="entry name" value="AAA_lid_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01434">
        <property type="entry name" value="Peptidase_M41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140990">
        <property type="entry name" value="SSF140990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01241">
        <property type="entry name" value="FtsH_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="9" id="KW-0132">Cell division</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 5" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 5" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="9"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="113"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="AAA" evidence="8">
        <location>
            <begin position="198"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="614"/>
            <end position="688"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="674"/>
            <end position="688"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="429"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="206"/>
            <end position="213"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="428"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="432"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="504"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="688" mass="74028" checksum="6E02C3E11B700CD5" modified="2016-01-20" version="1">MKRVFRGPWLWIVVAVVTVVLALEFLAPGGGFDEVPTSKLEKYIAEGQVKDITFIDGDQSIEATLDKGTRDSGDKVLSHYIQGEQETILAAVKEQVDKGTIAEANSKNPQPSLLGSLLATLLPFALIILLFIFLMNNVQGGGRGVMQFGKSKAKMISKDMPKTTFADVAGCDEAIEELGEIKEFLQEPGKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKENAPAIVFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVRGGVILIAATNRPDVLDPALLRPGRFDRQIQVDAPDLAGRKRILEVHSRGKPLGPDVQLMSVARRTPGFSGADLANVLNEAALLTARNGLKVITAETLDEAIDRVVAGPQRNSRLMSEKEKLITAYHEGGHALVAAALPGTDPVHKITILPRGRALGYTMVLPDEDKYSQTRSEMLDKLAYMLGGRAAEELIFHDPTTGAGNDIEKATSLARAMVTQYGMTDRLGAIKLGDSNSEPFLGRDMGHQRNYSEDVAAIIDEETKNFLATAHQEAFDILVENRDVLDALVLALLDKETLDKEQVAEVFTALRRRPERPAWTGSPNRVPSTIPPVEIPEEIRRRAEQNGQAPAAEPDNGQILTPPGPGGDVYGGTPTAPPTDPQPPAPTAGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VB11</accession>
    <name>A0A0Q8VB11_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Signal peptidase I</fullName>
            <ecNumber evidence="4">3.4.21.89</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_10515</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>Cleavage of hydrophobic, N-terminal signal or leader sequences from secreted and periplasmic proteins.</text>
            <dbReference type="EC" id="3.4.21.89"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Membrane</location>
            <topology evidence="4">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the peptidase S26 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.89" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894768.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52835">
        <property type="protein sequence ID" value="KRC52835"/>
        <property type="gene ID" value="ASE19_10515"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006465">
        <property type="term" value="P:signal peptide processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06530">
        <property type="entry name" value="S26_SPase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000223">
        <property type="entry name" value="Pept_S26A_signal_pept_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019756">
        <property type="entry name" value="Pept_S26A_signal_pept_1_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019533">
        <property type="entry name" value="Peptidase_S26"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10502">
        <property type="entry name" value="Peptidase_S26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00727">
        <property type="entry name" value="LEADERPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02227">
        <property type="entry name" value="sigpep_I_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00501">
        <property type="entry name" value="SPASE_I_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 4" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_S26" evidence="5">
        <location>
            <begin position="19"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR600223-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU362042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF10502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="214" mass="23142" checksum="A4597BBAD7D1F412" modified="2016-01-20" version="1">MTHRADRRPWLRTALGVLALVLFFAAILVVIAVLAFSVKVSGHSMDPTLADGDRLLVNPFGSDDVHRFDIVETTLGDREIPLVKRVIGMPGDRIRATADTDPPVVRIKPAGEDEEYVVDNPAWSGRVGEKTGPCCAEDGTSGTPGQQAGGELGWVTVPEGHYWVVGDNWGGSDDSRTFGFVAADQVEARISFRVQPFGDLGRLRHEVRLVAATP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VB86</accession>
    <name>A0A0Q8VB86_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">4-hydroxybenzoyl-CoA reductase subunit gamma</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10945</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894847.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52915">
        <property type="protein sequence ID" value="KRC52915"/>
        <property type="gene ID" value="ASE19_10945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1843415at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="165" mass="17518" checksum="81C1A08A819BD10C" modified="2016-01-20" version="1">MTEEIHRIRLRVNGVEHEVAVPARRLLSDALRHDLGLTGTHVGCEHGVCGACTILVDGAPMRSCLTFAVSAAGSELTTVEGLARPDGSLGPVQQAFRECHGLQCGFCTPGFLTTITAGLAENPDPTEDEARDMVAGNLCRCTGYQNIVKAVCRAAEIAREDRDSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCC6</accession>
    <name>A0A0Q8VCC6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Enoyl-CoA hydratase 2</fullName>
            <ecNumber evidence="1">4.2.1.119</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Enoyl-CoA hydratase 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_05540</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a (3R)-3-hydroxyacyl-CoA = a (2E)-enoyl-CoA + H2O</text>
            <dbReference type="Rhea" id="RHEA:26526"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57319"/>
            <dbReference type="ChEBI" id="CHEBI:58856"/>
            <dbReference type="EC" id="4.2.1.119"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.119" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894164.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54917">
        <property type="protein sequence ID" value="KRC54917"/>
        <property type="gene ID" value="ASE19_05540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1380653at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03450">
        <property type="entry name" value="NodN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002539">
        <property type="entry name" value="MaoC-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039375">
        <property type="entry name" value="NodN-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01575">
        <property type="entry name" value="MaoC_dehydratas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC-like" evidence="5">
        <location>
            <begin position="11"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00029334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00030115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="152" mass="16632" checksum="0B6D27790CBD1380" modified="2016-01-20" version="1">MRVFTTFEEVAEAAGTELGTSDWVTIDQRRVNQFADATGDHQWIHVDIERAKEGPFGGTIAHGYLTLSLVPWLGSQIFTLRTPGAKLNYGVNKVRFPTPLLVGKRIRLHVKMGDVVDIPSGKQLTVQHTVEIEGESKPACVAETVVLLLPGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCE1</accession>
    <name>A0A0Q8VCE1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Peripla_BP_6 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_05000</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894257.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54824">
        <property type="protein sequence ID" value="KRC54824"/>
        <property type="gene ID" value="ASE19_05000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="776281at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359899" description="Peripla_BP_6 domain-containing protein" evidence="2">
        <location>
            <begin position="35"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="3">
        <location>
            <begin position="133"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="33"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="499" mass="50672" checksum="256A43C92F5E5EE5" modified="2016-01-20" version="1">MSLVRLARLIGASSLVLVLAACGSRLDPDTVADASGGGNSSGGTGNGSSLGGDAGSGDLGDAGTGDPGASGGDAGATGGPAVNGGAGGSGSGGSGGGGGGGTGGGGTKGSASGGVKAGSCAGFKNQKGITDKTITLANISDISGPVPGIFESAQQATRAYIEYFNASNTICGRKLELVNLDSRADAGADQQGYVKACDNAFAAVGSMSAFDSGGAGTANSCGLPDLRAVTVNPERQACKTCFAAYSIRTNLIPDSAAKWLGSKYPSAVKNAAVLYINAGAAPVNAKSMAAGYEKGAGWDVKYLQGIDVAEFNFAPYVQQMKDKGIKAVAYQGPYQNTVKLQQAMQQQGFKPDFFLQDPTIYDARYLQQAGSLADNVYIYSANDLFENRNNAEIQLYLSYLQQVKPGAVPNYYGLYAWSATRLFVEKAVALGGKLDRASLVQAVRSTTSWSGNGAHTPMNLGTANTPPCLKVAQYKGGKWQQVSPGNYMCGRVVNSGIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCF3</accession>
    <name>A0A0Q8VCF3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_04765</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894293.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54788">
        <property type="protein sequence ID" value="KRC54788"/>
        <property type="gene ID" value="ASE19_04765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1637766at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032808">
        <property type="entry name" value="DoxX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07681">
        <property type="entry name" value="DoxX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="84"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="122"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="164" mass="17438" checksum="655576080276A052" modified="2016-01-20" version="1">MPAALRTWVVPVLAGAARVALGGLWLNEGITKYRAGFGSADIHLVADGAAANTRVPDYFAAFAEHVLGPQAELFGFLMPLLETALGLGLIAGVLTLPAAVNSTLALLSYWSADQLIDQYPVMLGLSVLVVAVPAQAGRFSVTSLALRVVPSLRRRTDASWRRWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCS6</accession>
    <name>A0A0Q8VCS6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05770</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894120.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54956">
        <property type="protein sequence ID" value="KRC54956"/>
        <property type="gene ID" value="ASE19_05770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2018197at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="208" mass="22347" checksum="87AFE4D1074F796E" modified="2016-01-20" version="1">MTDAQLAPRLGFVLPGDWWHVDLTSEQTAQADARALSRALGGRSDERAQVRHQLEGYVLQAGRKAREAKASDFYFALEMLPGVPIPASLAVYWPEVPFGLSIEAGAQVAAHSLASTIQRKDPVAEIETWGDAGDAVIRVAKKLAGPIARSAGIAADAELSVTYWLIRKGTSGPALLQFTTQLVDEAEHMITLFDAIVGTVAWTEPDPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCX5</accession>
    <name>A0A0Q8VCX5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06120</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894058.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55016">
        <property type="protein sequence ID" value="KRC55016"/>
        <property type="gene ID" value="ASE19_06120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1724782at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="222" mass="23114" checksum="F74A555A0EE26C31" modified="2016-01-20" version="1">MTHTPGRLALALCLLAPGWSGLAACGLLDGSSRVEEALEYLPAGATSVTFVDRAALEDRDGEPYAAPLTIDARVEWEAFATTGDDTVRVWKLDDDTDFEALADALKNTPEGDAVRLVPDERLAVAGDVDTAVAVAGDDEDSLADDGSYADLLDEAPDQDGLEFAGMTLEAGCGPAALFVVTDDVVRAHSALGPDASTEDTAFADRATAYAGWVARSGIFACD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDP0</accession>
    <name>A0A0Q8VDP0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07465</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895345.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53913">
        <property type="protein sequence ID" value="KRC53913"/>
        <property type="gene ID" value="ASE19_07465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="817710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="127"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="1">
        <location>
            <begin position="127"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="244" mass="26316" checksum="ACD5D8501453C538" modified="2016-01-20" version="1">MSTLLLLTSALQPSAEVLPGLALLGHHVKILPAEGSALLEAPEADLLLVDGRQDLAGSRDLCRLIRTTGTDVPVLLVATEGGLAVVNHDWGMDDVVLHTCGPAELEARIKLAIGRLAAARDAADPEAHVIRSGEVVVDDATYTAKVGGRVLDLTFKEFELLKFLAQHPGRVFSRQQLLQEVWGYDYFGGTRTVDVHVRRLRAKLGPENETLIGTVRNVGYRFVLPSKEAAAEADSARLTEDVDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDS4</accession>
    <name>A0A0Q8VDS4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10485</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894762.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52829">
        <property type="protein sequence ID" value="KRC52829"/>
        <property type="gene ID" value="ASE19_10485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1496279at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013784">
        <property type="entry name" value="Carb-bd-like_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49452">
        <property type="entry name" value="SSF49452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359941" evidence="1">
        <location>
            <begin position="27"/>
            <end position="574"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="574" mass="59809" checksum="5E04C12E528619B5" modified="2016-01-20" version="1">MSRRLLTFLAALAAVLAPSLVLVAGAATPARAAGTGSITGTVTVPAGYDVQVVQVVVVSASDPAYHRVATDWTEPDGSFAVTGLPTGSYYVGYGTSWSDMNTCDGRDRWWSGPGAAPAGVCAYDGGIGALTITGATALSVTDGAATDLESVPLLTSFPTYPYTGKVAAPAGHTTAGVVAELWREDGGAWYPQVPGGWYRVAGVPAQTLDATGTFEFDLISPPWEHRYAVRFVDETGHGYAFSFATGGLSSAVGGAGGTAFGAGSIGLLDLGYRVGAGHDAGTYSFGFEVGHASGGVTLTGAPEWGRTLTAHSDVVWSDPTVRTRFQWYRNGVAVDGATAPTYVLNGMDDGWEVGISVRAVPAPGWAYNGAPIDSPTVVVENTTPLAVAPPTVTGTVAVGRRLTATAGSWRPTAPTYSHTWRWFRGATPIPGATSATYVVTPADLGARLRVEVTADHPTWFTGPGTSLSSQTPVVVPGTIPAAWITRWPVRSGTPRVGRTVGVTAPAYSADGRAHRLRATYRWYVGGRAVAGATTRQLVLRRAWRGRTVAVRVAVGTPGYRATYRTLSFGRVRSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE71</accession>
    <name>A0A0Q8VE71_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11190</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52960">
        <property type="protein sequence ID" value="KRC52960"/>
        <property type="gene ID" value="ASE19_11190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1963886at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359964" evidence="1">
        <location>
            <begin position="31"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="120" mass="12699" checksum="42C5885A2BFF4997" modified="2016-01-20" version="1">MRAAVHSVRTATTVAGLTLLVGFGAIGVIAEPQPTAPSERLGMSSGPLEDMMQMNRCSFTGFDRTVIPSKAIVRTPEGDTELVTFDRGWDVFSGKIAGELVAVCLGPETAPKPSPRSSRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF62</accession>
    <name>A0A0Q8VF62_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Lysine N-acyltransferase MbtK</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Mycobactin synthase protein K</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_12555</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Acyltransferase required for the direct transfer of medium- to long-chain fatty acyl moieties from a carrier protein (MbtL) on to the epsilon-amino group of lysine residue in the mycobactin core.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Siderophore biosynthesis; mycobactin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the IucA/IucC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895124.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53197">
        <property type="protein sequence ID" value="KRC53197"/>
        <property type="gene ID" value="ASE19_12555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="856726at2"/>
    <dbReference type="UniPathway" id="UPA00011"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016881">
        <property type="term" value="F:acid-amino acid ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019290">
        <property type="term" value="P:siderophore biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019432">
        <property type="entry name" value="Acyltransferase_MbtK/IucB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007310">
        <property type="entry name" value="Aerobactin_biosyn_IucA/IucC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022770">
        <property type="entry name" value="FhuF_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037455">
        <property type="entry name" value="LucA/IucC-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34384">
        <property type="entry name" value="PTHR34384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06276">
        <property type="entry name" value="FhuF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04183">
        <property type="entry name" value="IucA_IucC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01006">
        <property type="entry name" value="AlcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AlcB" evidence="6">
        <location>
            <begin position="12"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00031122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="768" mass="84884" checksum="CB18BC648D47AB93" modified="2016-01-20" version="1">MTTSLAGRITIEPLDLDRDLELLHAWVTHPRSAFWMMQGALLDDVRTEYAGIAAHLHHDAFLGRVDGRPTFLVETYDPAYAEGLADLPELQPGDLGMHVLVAPPEGPPVPGLTTAVLDAVMAFCFADPRVGRVVVEPDVRNHAIRAKNLAAGFTELREVPLPGKTGMLSVCPREDWHAPEHLTPEHLTPEHLARAQRHLVAKALGEFSHERLIAPVRVPGEDLWRVDTEGSTYTFAARVKKLEHWVVDAASVTRTVGVEPAEPDAQELVAELAPVLGIPDQLLPTYLEEIASTLASTAWKLCHRAVPVAQLVDASYQDIESAMTEGHPAFVANNGRIGFGIDDYTAYAPEAGRPVRLHWVAARRSLTHLSLGEGESEQSLYDAELAAPVRDRFHRRLAALGLAAEDYLFLPVHPWQWTNKLAITFAPDVARRDLVHLGEGEDDHRPQQSIRTFFNASRPDRHYVKTALAIQNMGFVRGLSPRYMEATPAINDWVASVVHADEELQACGFEVLRELAAIGYTGDAFHRLAGTSPYRKMIAALWRESPLPRTPVGEQLTTMAALLHRDADGDALVTAWIKASPVDAATWVRAYLRAYLRPLVHCLHAYDLAFMPHGENLLLRLRDHVPVGAFMKDIGEEVALMGDFPLPPEVERIRGSFPDDVKALAVHTDVFDGVLRFVAAILDEDGILPEDEFWAIARATIEEHAADHPELADAAGRYDLLRERFRHSCLNRLQLRNTLQMVDIADQAESLIFAGTLANPVATPPVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF94</accession>
    <name>A0A0Q8VF94_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Leucyl/phenylalanyl-tRNA--protein transferase</fullName>
            <ecNumber evidence="4">2.3.2.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">L/F-transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Leucyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Phenyalanyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">aat</name>
        <name evidence="6" type="ORF">ASE19_12380</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>L-leucyl-tRNA(Leu) + N-terminal L-arginyl-[protein] = H(+) + N-terminal L-leucyl-L-arginyl-[protein] + tRNA(Leu)</text>
            <dbReference type="Rhea" id="RHEA:50416"/>
            <dbReference type="Rhea" id="RHEA-COMP:9613"/>
            <dbReference type="Rhea" id="RHEA-COMP:9622"/>
            <dbReference type="Rhea" id="RHEA-COMP:12672"/>
            <dbReference type="Rhea" id="RHEA-COMP:12673"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:64719"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78494"/>
            <dbReference type="ChEBI" id="CHEBI:133044"/>
            <dbReference type="EC" id="2.3.2.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>L-leucyl-tRNA(Leu) + N-terminal L-lysyl-[protein] = H(+) + N-terminal L-leucyl-L-lysyl-[protein] + tRNA(Leu)</text>
            <dbReference type="Rhea" id="RHEA:12340"/>
            <dbReference type="Rhea" id="RHEA-COMP:9613"/>
            <dbReference type="Rhea" id="RHEA-COMP:9622"/>
            <dbReference type="Rhea" id="RHEA-COMP:12670"/>
            <dbReference type="Rhea" id="RHEA-COMP:12671"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:65249"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78494"/>
            <dbReference type="ChEBI" id="CHEBI:133043"/>
            <dbReference type="EC" id="2.3.2.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>an N-terminal L-alpha-aminoacyl-[protein] + L-phenylalanyl-tRNA(Phe) = an N-terminal L-phenylalanyl-L-alpha-aminoacyl-[protein] + tRNA(Phe)</text>
            <dbReference type="Rhea" id="RHEA:43632"/>
            <dbReference type="Rhea" id="RHEA-COMP:9668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9699"/>
            <dbReference type="Rhea" id="RHEA-COMP:10636"/>
            <dbReference type="Rhea" id="RHEA-COMP:10637"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78531"/>
            <dbReference type="ChEBI" id="CHEBI:78597"/>
            <dbReference type="ChEBI" id="CHEBI:83561"/>
            <dbReference type="EC" id="2.3.2.6"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the L/F-transferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.6" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53169">
        <property type="protein sequence ID" value="KRC53169"/>
        <property type="gene ID" value="ASE19_12380"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008914">
        <property type="term" value="F:leucyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030163">
        <property type="term" value="P:protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3550">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00688">
        <property type="entry name" value="Leu_Phe_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004616">
        <property type="entry name" value="Leu/Phe-tRNA_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042203">
        <property type="entry name" value="Leu/Phe-tRNA_Trfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042221">
        <property type="entry name" value="Leu/Phe-tRNA_Trfase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30098">
        <property type="entry name" value="PTHR30098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03588">
        <property type="entry name" value="Leu_Phe_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00667">
        <property type="entry name" value="aat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="1 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 6" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="24"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="25"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="251" mass="27557" checksum="6957C30515EC1EDB" modified="2016-01-20" version="1">MTHPVEPPATPWVFPRREDLAALPVLDEPDPDELDELEDPDDAGHDGSDLVAVGADLEPGTLLAAYRTGLFPMPEGRSVGWWCPAHRGVLGLDELRVSRSLRRSARTFEVRVDTAFTEVLAACADPRRPHGWIDRRIARAYTELHRLGWAHSVETWRDGRLVGGLYGVAIGGLFAGESMFHHETDASKVALMGLVEGLRADPDGAAGRRLVDVQWVTPHLASLGVRQVPRAEYVGGLAALLDVPRSRMWDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFC2</accession>
    <name>A0A0Q8VFC2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7 8">50S ribosomal protein L10</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rplJ</name>
        <name evidence="10" type="ORF">ASE19_09755</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 7">Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 7">Part of the ribosomal stalk of the 50S ribosomal subunit. The N-terminus interacts with L11 and the large rRNA to form the base of the stalk. The C-terminus forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the universal ribosomal protein uL10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894644.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52706">
        <property type="protein sequence ID" value="KRC52706"/>
        <property type="gene ID" value="ASE19_09755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1470978at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05797">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00362">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022973">
        <property type="entry name" value="Ribosomal_L10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043141">
        <property type="entry name" value="Ribosomal_L10-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002363">
        <property type="entry name" value="Ribosomal_L10_eubac_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001790">
        <property type="entry name" value="Ribosomal_L10P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11560">
        <property type="entry name" value="PTHR11560"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00466">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160369">
        <property type="entry name" value="SSF160369"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01109">
        <property type="entry name" value="RIBOSOMAL_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7 10" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7" id="KW-0699">rRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="175"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002633"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00026025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC52706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="223" mass="22453" checksum="5A6C202FF122DFF6" modified="2016-01-20" version="1">MARADKQAAVAEIAESFSGSAGAVLTEYRGLTVKELQNLRRSLGANADYAVVKNTLAKLAASEAGIEGFDDLLTGPTAIAFIKGDVVEAAKGLRDFAKANPALVIKGGVLDGALLDAKEIAKLADLESREVLLGKLAGAMLASLSQAVYLLNAPLAQAARLAGALEAKAQEDPSILAGGAGTPAAAEETPAAEEAAPAEEVEAPAAEAAEVEAADEATESTDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFX3</accession>
    <name>A0A0Q8VFX3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13665</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897114.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53389">
        <property type="protein sequence ID" value="KRC53389"/>
        <property type="gene ID" value="ASE19_13665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1387451at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360006" evidence="2">
        <location>
            <begin position="34"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="110"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="278" mass="27746" checksum="84281E709CD49179" modified="2016-01-20" version="1">MKLSLVRRLATGFLFLDVLVIGAAAVQVDAVVAQTVTAPPVGAAPAPTPLPVDGLAPAAVPEWPGAPLPASVPLGDGGVPQAAAPVPPVTPSGTDEPSSGGKGSTPPTAPPEEGGVPAGPGIPPCPIRLSEHPQSGGLQSLVPFAPAFGPFSAEAFALASAYQPELQLLGPILAQYPGIEPAVEPILTPLVSTLGTLLTRGLDVINPLYGPYRTRFLEAETKLAAALAPYSQALAHNALGGCIVELQSALLTASRTGTPGVPRPTALDLTALGLGGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFY7</accession>
    <name>A0A0Q8VFY7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10755</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894814.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52882">
        <property type="protein sequence ID" value="KRC52882"/>
        <property type="gene ID" value="ASE19_10755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1794390at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000944">
        <property type="entry name" value="Tscrpt_reg_Rrf2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33221">
        <property type="entry name" value="PTHR33221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02082">
        <property type="entry name" value="Rrf2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00738">
        <property type="entry name" value="rrf2_super"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51197">
        <property type="entry name" value="HTH_RRF2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="152" mass="16507" checksum="783647CF04671AF4" modified="2016-01-20" version="1">MRVSAKSDYALRALIAMTGRSDGRAVSAEELGRLQDIPHGFLQAILADLRRAGIVMSQRGQSGGWRMAREAGTVSVADVIRAVDGPLVSVYGLRPEAVNYNESAEVLQHVWIAARRALREVFENVSIQQLADGSLPESVKALTVDEDAWAPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG32</accession>
    <name>A0A0Q8VG32_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transglutaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11030</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894863.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52930">
        <property type="protein sequence ID" value="KRC52930"/>
        <property type="gene ID" value="ASE19_11030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="670657at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013589">
        <property type="entry name" value="Bac_transglu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018667">
        <property type="entry name" value="DUF2126"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002931">
        <property type="entry name" value="Transglutaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08379">
        <property type="entry name" value="Bact_transglu_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09899">
        <property type="entry name" value="DUF2126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01841">
        <property type="entry name" value="Transglut_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00460">
        <property type="entry name" value="TGc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TGc" evidence="2">
        <location>
            <begin position="175"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="340"/>
            <end position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1098" mass="119308" checksum="02713DDE7C21872D" modified="2016-01-20" version="1">MSIKVALEHRTTYDFAHPVAVGPHVVRLRPAPHCRTPIEAYTLKVEPAGHFVNWQQDPFGNWLARLVFPEKVKTLDITVGLVADLMVINPFDFFIEEYAERVPFAYDEHLAADLAPYLRPVADSEATGAWREGLPPLPEDGVATVQFLAELNSAVHRDVAYSVRMEPGVQTPDHTLASGIGSCRDSAWLLVSLLRQYGLAARFVSGYLVQLASDAFATEGLDGPTGPTEDFTDLHAWAEVFLPGAGWVGMDPTSALFAGEGHIPLSATPHPSSAAPIEGATDPVEVTFGFSNTVTRVHEDPRVTAPYTASQWARIDELGAAVDKRLEAGDVRLTMGGEPTFVSLEDSSTPEWSTDADGPEKRRLATELADRLRTRYAEGGVVHRGQGKWYPGEPLPRWAIGLQWRADGEPLWADPALLADPWAPGAATGAAAEAVGAEVARLLGLPGDQLRPAFEDPFAALVAHVAQPDGDRPTAGESDATEDLVARLDADVTEPTGWVLPLTTGETGWTSPDWRFRRGRLVLSPGTSAVGLRLPLDSIDWTDPEAPAQPSYLEAGESVVPGIPPVALATAEGADRTALAFEERDGHVHVFLPPTTRFEDYADLLHVVETAAAGTATTVVLEGYQPPPDPRLVQLSVTPDPGVIEVNVQPTRSWAEQRDLTTALYSEARRVKLSTEKFDLDGLHTGTGGGNHLTLGGHQPVDSPLLRRPDLLVSLVTYWQRHPSLSYLFSGRFIGPTSQAPRFDEGRPESVYEMEIACAEVLRTAAEGEPRPWLVDRALRHLLTDLTGNTHRAEFCIDKLYSPDSTRGRLGLLELRGFEMPPHPQMALVQALLVRSLVAMFWDRPIDPSTAPLVRWGTRLHEDFLLPQGAIADIHEVVADLVAAGIDFDPAWLAPFTEFRFPRIGFADVAGSISLELRQGVEPWHVLGEEATGSGTARYVDSSVERIQVTVRGIDPDRHLVTCQGVPVPLTAVDPGPVPTGHYGGVRYKAWAPWSALHPSIPVDSPLTFDVVDVAAGVSLGGATYHVVHPGGRTYDHPPVNAQEAEARRAARFEPRRHTAGPIDVAVLRRLAREVASTEYPHTLDLRRVASRTPRSGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHA2</accession>
    <name>A0A0Q8VHA2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">1-phosphofructokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_03375</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the carbohydrate kinase PfkB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892879.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56862">
        <property type="protein sequence ID" value="KRC56862"/>
        <property type="gene ID" value="ASE19_03375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1323781at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01164">
        <property type="entry name" value="FruK_PfkB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017583">
        <property type="entry name" value="Tagatose/fructose_Pkinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000535">
        <property type="entry name" value="1PFK/6PFK/LacC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03168">
        <property type="entry name" value="1-PFK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="3">
        <location>
            <begin position="9"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR000535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="328" mass="32692" checksum="43CE27956853004B" modified="2016-01-20" version="1">MIVTVTPNPSIDRTLVLPDALVRGGVHRVADALDQPGGKGVNISRACVAAGVPTCAVLPVAPDDPFVAELDRLGVPSAPVPPAGPMRVNLTLTEPDGTTTKLNAAGASVSVADLDALADQVLAQPADGWVVLAGSLPPGAPDDWYADLAARLRATGRRVAVDTSDAALEAVVAGLARGTAPSLLKPNAEELASIVGADESALEGDPALVATAARTLVDRGVGAVLATLGGAGAVLVDATGAWHAVPPPTRVVSTVGAGDSSLFGYLAADLAGAPAPERLAAAVAWGSAAAGLPGTTVPTPDDVRIHEVRVRALDLSATAHEGEPSWQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHD1</accession>
    <name>A0A0Q8VHD1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycerol acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892911.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56894">
        <property type="protein sequence ID" value="KRC56894"/>
        <property type="gene ID" value="ASE19_03565"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016676">
        <property type="entry name" value="P_lipid/glycerol_AcTrfase_prd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016753">
        <property type="entry name" value="P_lipid/glycerol_ac_tran_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PlsC" evidence="1">
        <location>
            <begin position="42"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="28050" checksum="05D4D68A4844C271" modified="2016-01-20" version="1">MSALERRDPASVAAVLPLLKLAMKAYFRSSVSGMEKVPDGGALIVGNHSGGLMPMDVPIIAVAFADAFGAERPLYCLAHDMLFTGAAGPVMRRFGFVNATREAAHEILTSGGVTIVFPGGDYDTFRPTLKANVVDFNGRTGYLRTALRAGVPVVPVVSIGGQESQFFLTRGEWIGRHSPLRKLMRTDLFPIGVGFPFGLVPAPLNFPLPAKITTRVLDPIDIEAEFGPDPDLAEVDEVVRGRMQDALAEMSRKRRFPVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHP8</accession>
    <name>A0A0Q8VHP8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PLDc_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05055</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894246.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54835">
        <property type="protein sequence ID" value="KRC54835"/>
        <property type="gene ID" value="ASE19_05055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1881748at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360051" description="PLDc_2 domain-containing protein" evidence="1">
        <location>
            <begin position="30"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="domain" description="PLDc_2" evidence="2">
        <location>
            <begin position="107"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="466" mass="51973" checksum="9A9A23210ACE6A60" modified="2016-01-20" version="1">MRRVATGVIIWMTAFAVVLGLGSLPGAEAAAPAATLTTASAAARVPDTTETTTSDRTATRTERAPVVYNPSPGLRFNEPYNRGGRRVSSIRAHILRSIDSTRRGDLVQMAAWNVRGRSWSQAIIRAHRRGVAVQIIMDKSNWSREHPNPEAADIARAVRGVEDRKYQSFLRLCAGSCRGARGIPHSKFYLFSRVQQRKFVTMFGSNNATDVAANDQWNDLYTWVNNEKIYRTFQTVFRQMVLDKNQYSKAFIRAPFSPTQSVDFYPYRGAVPNAVPDPDMARLNKIRCKGSTARGTNGRTQIRVMQTAIHGDRGIRLAQKVVQLKRAGCNIRIVYALMGNNVHALLKANGVPKLQLAYDRDRNGVYDIYIHMKSLAIRGVYEGVTNANVTYNGSANWSAVPLASDEVVGEFRSWAITNAYVKWTDFLFTHRPARWGPVNLAPISTSSVEGRFVPVDPYSLMKENGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHV2</accession>
    <name>A0A0Q8VHV2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05950</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894089.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54985">
        <property type="protein sequence ID" value="KRC54985"/>
        <property type="gene ID" value="ASE19_05950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1294334at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="247" mass="25122" checksum="71940ED6A4A090CE" modified="2016-01-20" version="1">MVDRSQQVVVVIGGASGIGAATARVLADAGHEVVVADLPGTACDVPVDVTDEASVAALLDGVVADHGTFHGVVNCAGVSTLSRVVDHDAAEWRRIVDVCLTGAFLVLKHAGQRVADGGSLVSLSSLNARQPGTGLAAYCASKAGLVALTEVAALELGARGVRVNAVAPGLVVTPLTAPAMDIPGVREDYLDNTALGRSGEPTEIAAAIRFLLSDDAAWITGETLDINGGAHLKRYPDLVGLVEKAFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI35</accession>
    <name>A0A0Q8VI35_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SGNH_hydro domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05615</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894150.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54931">
        <property type="protein sequence ID" value="KRC54931"/>
        <property type="gene ID" value="ASE19_05615"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01823">
        <property type="entry name" value="SEST_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037460">
        <property type="entry name" value="SEST-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37981">
        <property type="entry name" value="PTHR37981"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360058" description="SGNH_hydro domain-containing protein" evidence="1">
        <location>
            <begin position="25"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="domain" description="SGNH_hydro" evidence="2">
        <location>
            <begin position="44"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="330" mass="34733" checksum="6B2D941B4C3DB172" modified="2016-01-20" version="1">MTPLRSAAAAALLALTAPALTVLADGPTARATTVVTPTYEEYVALGDSWSADVVFFDKDGLPDSRYVPVDCAQSHSNYPKLVAKQLGVRTFRDATCGSATTDHFTQPQELPLGGVNPPQFNRLTRTTDLVTVGIGGNDAGVAAGALSCISALPIGIPAPRLPLPDVLPLVDIAQLPLGACKERFTAGGTDRLAQAVARSEIKVVRALQEIRRRSPKARILLVNYLDAIPAKGCWPIVPITNPDMAYLHGVFVELNAMLARAARRGGAELVDTHPLSTGHHVCTGPRTRYVEGLGVLSVNDLAVAVPAHPNAAGARSQARSVLQQLRTPAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI50</accession>
    <name>A0A0Q8VI50_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_04165</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57003">
        <property type="protein sequence ID" value="KRC57003"/>
        <property type="gene ID" value="ASE19_04165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1570162at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025996">
        <property type="entry name" value="TetR_C_WHG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13305">
        <property type="entry name" value="TetR_C_33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="5">
        <location>
            <begin position="17"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4">
        <location>
            <begin position="40"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC57003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="227" mass="23903" checksum="9B6163CD79FBBD40" modified="2016-01-20" version="1">MLLGYASPVASDSYHHGNLRTSLLEAAVATVAERGPQALVLRDLARQVGVSHNAAYRHFADRDELVTEVAAIAMERLVATLHERLERVSTDDPVLRARQRLAEIGRGYVEFAVAETGLFRLAFASTATVATAGTSASRDPLALLATCLDELVAVGFLSPEARVDAEATCWSGVHGFSMLHIDGALSSADDAERDAALDGLLVAIDRSYGASTGTPTEPGDIVSTGKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIL3</accession>
    <name>A0A0Q8VIL3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06390</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894468.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55059">
        <property type="protein sequence ID" value="KRC55059"/>
        <property type="gene ID" value="ASE19_06390"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01547">
        <property type="entry name" value="SBP_bac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360074" evidence="1">
        <location>
            <begin position="27"/>
            <end position="426"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="426" mass="44367" checksum="4E887DAE72CCE4D7" modified="2016-01-20" version="1">MRIQKTLAIAATTALLAVTSACGSEDDGGDSKGGGPEKADLVVWLNGADTPQPARDWLKKTFEDQNPGSTLTIEQQEWEGLVERLTTALTSADQTPDVVEVGNTQAPTFTTVGAFSDLTGDLADLGGDDLLPGFVDGATVDGKTFAVPYYAGSTYVFYRKDLFEDAGITAVPTSMTEFVDAATKLKQKSGKADFSGYWLPGKDWRDGAALLWDAGGDFAAPDGDGWKGTLSTPESIAGLTAFQDLYDAASGAPADANEADPVTPFCAGKIGMMSRPGWVYGMLTDPKSGCPKLAEKVGVFALPGSNGGPAPVLLGGSDIAISAKSPNQDLSRKVLELMVSEDYQKILAEAGLTPARESFASMLGDDEFAQATVEAASNAKLTPAAAAWATVEGKFVLEDLYSEIAQGGDVAELAAEADDTITAELN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIV3</accession>
    <name>A0A0Q8VIV3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Biotin carboxylase</fullName>
            <ecNumber evidence="2">6.3.4.14</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_23790</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>biotin</name>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.14" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893990.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57356">
        <property type="protein sequence ID" value="KRC57356"/>
        <property type="gene ID" value="ASE19_23790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="361205at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004075">
        <property type="term" value="F:biotin carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001882">
        <property type="entry name" value="Biotin_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00289">
        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00878">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50979">
        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00188">
        <property type="entry name" value="BIOTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0092">Biotin</keyword>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="11">
        <location>
            <begin position="2"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="10">
        <location>
            <begin position="121"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="domain" description="Lipoyl-binding" evidence="9">
        <location>
            <begin position="514"/>
            <end position="590"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="502"/>
            <end position="523"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC57356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="594" mass="62073" checksum="9221B69407AA451D" modified="2016-01-20" version="1">MSLKKVLIANRGEIAVRVIRAAKDAGIASVAVYAEPDANALFVRLADEAYSLNGSTPADSYLVIEKIIEVAKRSGADSVHPGYGFLAENAQFAQAVIDAGLIWIGPSPAAIEGLGDKAKAKQIALAAGAPLAPGLKDPVESADEIVAFAQEHGLPVAIKAVFGGGGRGLKVARTLEEIPELFESATREAISAFGRGECLVEKFLDKPRHVETQCLADSHGNVVVISTRDCSLQRRHQKLVEEAPAPFLTDEQNARLYESSKAILKEAGYVGAGTCEFLVAADGTISFLEVNTRLQVEHCVSEEVTGIDLVREMFRVAAGEELGYGDPEIRGHSIEYRINAEDGGNNFMPAPGTLTAWNPPQGPGVRVDGGYENGETVPGAFDSLVAKLIITGSSRTQAIERSRRALSEFQVDGMPTAITFHEVIVNDPAWVGASNPSGEGSFDVYTTWIETDFDNQITPYGGAPGEAEEAGEKQTVVVEVGGKRIEVTLPAGLGGIAAGPAAAAKKPKRSAGKKAGAAASGDAVTSPMQGTIVKVAVEEGQTVAKGDVVVVLEAMKMEQPLKAHKDGTITGLSAEVGATVGNGEVVAEIKDAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJH3</accession>
    <name>A0A0Q8VJH3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH merR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23815</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893993.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57359">
        <property type="protein sequence ID" value="KRC57359"/>
        <property type="gene ID" value="ASE19_23815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1661714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="9"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="16470" checksum="C32D3F89B047F8FA" modified="2016-01-20" version="1">MTAQTTGRTFTIKEAAALSGLPASTLRYYESIGVVAPVGRSASSGHRFYTEDDVDVLSWVACLNATGMSVKDMKEYVANAASGAAAAQLQVELLEAQGERLAVEAELLAVRRRYVQLKVDYWKARAAGDEERAQAWSHEAQSLADEMKRLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKC0</accession>
    <name>A0A0Q8VKC0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Lactamase_B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894375.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54705">
        <property type="protein sequence ID" value="KRC54705"/>
        <property type="gene ID" value="ASE19_04280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="733552at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="22"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="227" mass="25027" checksum="537F89437A40D27B" modified="2016-01-20" version="1">MAVTPTQVADGVHVGPLFPRNMFNTVILEGSSGDVVVDAGPPWSGRRLARFLQGRDVIEHVVTHAHGDHVGSSAWLCNHTGASLAMSEIEADDFEHGSINYHANRLGKYLVAPMGRKRRTVDRRLKEGDTVAGFQVLAQPGHSPGLLAFWRESDRTLIVGDGPINLSADPTSPRWLHLPRKLHHDPTEAVASRWRMTDLEPDLIVSTHGYPVRGLDRWVEGIRTVAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMJ5</accession>
    <name>A0A0Q8VMJ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892844.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56825">
        <property type="protein sequence ID" value="KRC56825"/>
        <property type="gene ID" value="ASE19_03175"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360180" evidence="1">
        <location>
            <begin position="23"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="327" mass="34795" checksum="5927051C1CBEB85C" modified="2016-01-20" version="1">MKTVARWALALVVPLGGVVAVAAPASAVTPQIYVTDGPYTRDQSVAILGVGCPTGAPVSVDVWDTAKPASHVARNAIATAAGSNGAFGYSFDLDNQFDAGAQVGFYFSCTATLDWSWDSASASTRTTYEWISVSSPHAEIIAPATATYGLSRDVWVSNDAVLGNVVLTLDGAPVPADLTAPEPTSHYGAWLFHLPAGLSVGTHALHVTWTPQAPGSPTVTDDATLRITRLRPRLSLSLSDRTVRRTQWFSARVRLSGTRIAPRTGTVVIKDGTRVVIRFTLRASDAGTRSVRIRLSRLGTRNVTATYLGSARLTSVRTPVITVRVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMJ6</accession>
    <name>A0A0Q8VMJ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02545</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56723">
        <property type="protein sequence ID" value="KRC56723"/>
        <property type="gene ID" value="ASE19_02545"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360192" evidence="1">
        <location>
            <begin position="37"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="430" mass="46309" checksum="82041C5DBD032867" modified="2016-01-20" version="1">MHHIRRSTRLLASAAVASLVLVTSACGSSDDPTKSAEQEKLGDGEALTITTFGEFGYDALIKEWNAAHPDIPVKQTKVGKWDVWKADLQTKMQANKGLPDVVAIEGDFIPALVAAPERWVDLSSDEVDGRWLDFKEKAARTEDGALLGYATDAGPEAICYRADLFEKAGLPTDRAEVAALLGTWDDFFATGEKFKKAVPDANWYDASGSVAQAMLNQVEFPFEKADNTVDVSSPELRAVFDTVADHIDLGSKAAQWSADWTASFKKGGVATVACPGWMRANIKSNQGDPAPKGVQWDIADVFPGGGGNWGGSYLAVPKSSTHQEEAQEFAAWLTAPEQQAKVFAVTGNFPSQVEALADPDVIGGTDPYFNDAPAGEIFSNRAAAITVQPYHGPLYSDILQKFQDAINRVDQGTDADKSWETFLSDVAALQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VML9</accession>
    <name>A0A0Q8VML9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894151.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54930">
        <property type="protein sequence ID" value="KRC54930"/>
        <property type="gene ID" value="ASE19_05610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2035522at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="4"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="141" mass="15134" checksum="DB12F0BFFEF1CED6" modified="2016-01-20" version="1">MDQRISFITLAVADLDATRRFYVDGLGWSPELDVPGEVLMFRAGPALVLSLWERTHFEAEVGPAMTGPGVAPLTIAHNLPTPEGVDDVLATARAAGAPHVQDGVERDWGGYSGYFADPDGYRWEVAFNPDPGLTAIVLPEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNS3</accession>
    <name>A0A0Q8VNS3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Translation initiation factor IF-3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">infC</name>
        <name evidence="9" type="ORF">ASE19_23250</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 5">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4 5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the IF-3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC59003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59003">
        <property type="protein sequence ID" value="KRC59003"/>
        <property type="gene ID" value="ASE19_23250"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00080">
        <property type="entry name" value="IF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036788">
        <property type="entry name" value="T_IF-3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036787">
        <property type="entry name" value="T_IF-3_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019813">
        <property type="entry name" value="Translation_initiation_fac3_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001288">
        <property type="entry name" value="Translation_initiation_fac_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019815">
        <property type="entry name" value="Translation_initiation_fac_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019814">
        <property type="entry name" value="Translation_initiation_fac_3_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10938">
        <property type="entry name" value="PTHR10938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00707">
        <property type="entry name" value="IF3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05198">
        <property type="entry name" value="IF3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54364">
        <property type="entry name" value="SSF54364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55200">
        <property type="entry name" value="SSF55200"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00168">
        <property type="entry name" value="infC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00938">
        <property type="entry name" value="IF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4 5" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="3 4 5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IF3_N" evidence="8">
        <location>
            <begin position="2"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="IF3_C" evidence="7">
        <location>
            <begin position="75"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="160"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="160"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="197"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF05198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="217" mass="24458" checksum="9F86C61B3C760C4F" modified="2016-01-20" version="1">MRVPEVRLVGPNGETVGIVPTDQALKLAQEADLDLVEIAPMGKPPVCKLMDYGKFKYENAQKAREARRNQTNVIIKEMKLRPKIDAHDYDTKKGHVVRFLKAGDKVKITIMFRGREQHRPELGYRLLQKLAEDVQELGFIESNPKQDGRNMVMVLGPHKKKAEAKAEVQAAKEERRAEREAEAAMDAAAQAERVAQKPAAQKKERGRSENLDPEIDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP20</accession>
    <name>A0A0Q8VP20_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23900</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57369">
        <property type="protein sequence ID" value="KRC57369"/>
        <property type="gene ID" value="ASE19_23900"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="270" mass="26940" checksum="36A57B67DB5D6AD9" modified="2016-01-20" version="1">MPPAGAGAPGGGGRGKVVGIAVAAVLVLALIGAGGFFGIRALTGDDDSASDATDSSASSDATDSSDEPSDPSEAGEPGDGGTSAMRPTAIQCGGGSPAPLAPPDASAREITGGGLTMPVLSDYAVSPESAAVHVFADGVQVQYTEVIARKWISEYALGGVPIANGFTSPEHAADVLMQCIAADPNFYKGFSGRKDLTSEDVTVDGHPGYRITAELRVSDPAVTMGGDDVTVIVVDTGSADTYGLFLGVVPIGDGARGDQLEAAIESLDVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPR9</accession>
    <name>A0A0Q8VPR9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00160</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59493">
        <property type="protein sequence ID" value="KRC59493"/>
        <property type="gene ID" value="ASE19_00160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1428495at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014513">
        <property type="entry name" value="UCP021525"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF021525">
        <property type="entry name" value="UCP021525"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="265" mass="28987" checksum="CACF2A1A626B555F" modified="2016-01-20" version="1">MLAPLQVVVEDLRAACPELPPESIMLVGAHCRDVLHAALGHESPTSTTTDLDLALALSSWTTYETITTAFQPVGSNQIRYRIASMPVDLIAFGAVEAPTGTVTPPPRDEAMSVWAFEEIFAGSLPLALDGMTIRIPDPAGYTAAKLMAWLDRSAWGETRDARDIALALHWYAESPSVQQRLWETDRGNDLLVAESSDLSRSAARLLGEDVVAVIGPERSAELVTRWPGDQVMLTHHLINTTPTPWQQSRRDELVDALTRGLTIVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPZ6</accession>
    <name>A0A0Q8VPZ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00305</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896822.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59518">
        <property type="protein sequence ID" value="KRC59518"/>
        <property type="gene ID" value="ASE19_00305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2164936at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360266" evidence="2">
        <location>
            <begin position="21"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="203" mass="21463" checksum="7952EBC71A3A2B37" modified="2016-01-20" version="1">MRVRLATAALAGVVLVSVLAGCSDDKDPGGDDPTSAAPTGTTSSTPSETPSDTASATVEPATGPEIHLPESADLRLIAGPEWKITDNGEPLVLADASVDGALAGVRVDISEFPQIGDDLAQLAKISLRIHAQNYKARLRHTGYRDVKGVKGYVFEGTGLHFNYYEWGGLDAGNRAVVLTFMIPTELDLADYVEPALASLEWRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ31</accession>
    <name>A0A0Q8VQ31_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Exodeoxyribonuclease 7 small subunit</fullName>
            <ecNumber evidence="3">3.1.11.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Exodeoxyribonuclease VII small subunit</fullName>
            <shortName evidence="3">Exonuclease VII small subunit</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">xseB</name>
        <name evidence="4" type="ORF">ASE19_00505</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates.</text>
            <dbReference type="EC" id="3.1.11.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3">Heterooligomer composed of large and small subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the XseB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.6" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896790.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59550">
        <property type="protein sequence ID" value="KRC59550"/>
        <property type="gene ID" value="ASE19_00505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2057189at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009318">
        <property type="term" value="C:exodeoxyribonuclease VII complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008855">
        <property type="term" value="F:exodeoxyribonuclease VII activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006308">
        <property type="term" value="P:DNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.1040">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00337">
        <property type="entry name" value="Exonuc_7_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003761">
        <property type="entry name" value="Exonuc_VII_S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037004">
        <property type="entry name" value="Exonuc_VII_ssu_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34137">
        <property type="entry name" value="PTHR34137"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02609">
        <property type="entry name" value="Exonuc_VII_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006488">
        <property type="entry name" value="Exonuc_VII_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116842">
        <property type="entry name" value="SSF116842"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01280">
        <property type="entry name" value="xseB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="70" mass="7751" checksum="0EDDFBF55F8F219D" modified="2016-01-20" version="1">MTDATAEKPSYEDARAELVEVVRQLEAGGTTLEESLALWERGERLATVCQDWIDGARERLEAVLGADDED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ56</accession>
    <name>A0A0Q8VQ56_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Sulfatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_23650</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="PTM">
        <text evidence="3">The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the sulfatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917925.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57753">
        <property type="protein sequence ID" value="KRC57753"/>
        <property type="gene ID" value="ASE19_23650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1067869at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024607">
        <property type="entry name" value="Sulfatase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00523">
        <property type="entry name" value="SULFATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00149">
        <property type="entry name" value="SULFATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360265" description="Sulfatase domain-containing protein" evidence="5">
        <location>
            <begin position="36"/>
            <end position="579"/>
        </location>
    </feature>
    <feature type="domain" description="Sulfatase" evidence="6">
        <location>
            <begin position="65"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="30"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="modified residue" description="3-oxoalanine (Cys)" evidence="3">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR600917-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC57753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="579" mass="63744" checksum="526357A008185291" modified="2016-01-20" version="1">MRTTVLKASGAAIGVALVVSLLVALLASGGRTTSAPPREPRAPGPSATAATSDVVAESPAMPEQPNVVLVMADDMRVDDLAFAPNLRRLIARHGVTFENSFSPFPLCCPARASFLTGLYAHNHKVWWHDPPYGYGAFDDSRTLATSLRTAGYRTGFVGKYLNRYGLATSKVTGEPSLTYVPNGWDDWRAAVEPPAGSSVHGNTYDYMDTPFNVNGTIDNSHRGVYQTDVVGDISVGMARRFARRAKPFFMYVNYVAPHHGMPRAPDTPTDVRDDNGELLHFMTPAVPDWVRGRFDRRITRGSGIARTGEQVETDVRDKPEALRVRYQPEGDEAKAALLYATRRRAEAVYVMDRNIARLVAELKRSGEWDRTVFAFTSDNGMIIGEHGLGMTKVRAHEPSLRVPLLMTGPGLRTAGRRYDPISTVDLTATLLDLADARPPHRPDGTSRLTTLLDGDQGWRTPVVTEAIHTALGGEDPLFKDRRSTIGIRVSRYSYTRYRGGGTELYDLVVDPREDTNVADDPAYADVRRALDALWPRIKDCRGRDCVPQLPDVLAADPAQNAADTASYWKQIDAAYGWGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQF0</accession>
    <name>A0A0Q8VQF0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5 7">30S ribosomal protein S9</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsI</name>
        <name evidence="8" type="ORF">ASE19_00385</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uS9 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896809.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59531">
        <property type="protein sequence ID" value="KRC59531"/>
        <property type="gene ID" value="ASE19_00385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1766414at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00532_B">
        <property type="entry name" value="Ribosomal_S9_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000754">
        <property type="entry name" value="Ribosomal_S9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023035">
        <property type="entry name" value="Ribosomal_S9_bac/plastid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020574">
        <property type="entry name" value="Ribosomal_S9_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21569">
        <property type="entry name" value="PTHR21569"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00380">
        <property type="entry name" value="Ribosomal_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00360">
        <property type="entry name" value="RIBOSOMAL_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="166" mass="17866" checksum="D25FAA55E0944B85" modified="2016-01-20" version="1">MTENTTEVEETFETDEQGLAYTSETSPSAAVDARPATIAPGAATGRRKEAVARVRLVPGTGTWTINGRTIEDYFPNKLHQQVVNEPFAALGLEGRFDVIARIHGGGITGQAGALRLGVARSLNAIDLDANRPTLKKAGLLTRDARAIERKKAGLKKARKAPQYSKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQG5</accession>
    <name>A0A0Q8VQG5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Flagellar assembly factor FliW</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">fliW</name>
        <name evidence="4" type="ORF">ASE19_01320</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Interacts with translational regulator CsrA and flagellin(s).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FliW family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896649.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59692">
        <property type="protein sequence ID" value="KRC59692"/>
        <property type="gene ID" value="ASE19_01320"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1767625at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01185">
        <property type="entry name" value="FliW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003775">
        <property type="entry name" value="Flagellar_assembly_factor_FliW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024046">
        <property type="entry name" value="Flagellar_assmbl_FliW_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39190">
        <property type="entry name" value="PTHR39190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02623">
        <property type="entry name" value="FliW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141457">
        <property type="entry name" value="SSF141457"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="3" id="KW-0143">Chaperone</keyword>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0810">Translation regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="139" mass="14822" checksum="CEAB50516D1B5A78" modified="2016-01-20" version="1">MTVAVLATMVTMDIPVIELAHPMPGFPDDARFALVRLDDDGVLHGFRSLDSEDLQFVVVPPAPFFPDYAPEIGDDVVTELGIVPEAAGDVLVLLVVRAGASLADTTVNLRAPLVVNPVTRRASQVILDDTDLPLAAPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQH0</accession>
    <name>A0A0Q8VQH0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-hydroxy-2-methylbutyryl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01640</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896590.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59749">
        <property type="protein sequence ID" value="KRC59749"/>
        <property type="gene ID" value="ASE19_01640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1260864at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="255" mass="26463" checksum="130ABBF8EDCA72E2" modified="2016-01-20" version="1">MDLVGSSAVVTGGASGLGLATVKRLLEAGAERIVIADLSSSDGKDVAESLGDRVVFAPADVRDADAMNEAYDAAEEAAPLRAVVHCAGRGGAVRLVNRDGTPGDIELYSEVVGINLIGSFNVLRLAAARMAKNEPVDGDRGVCILTSSVAAFEGQIGQIPYASAKAGIVGMTIVAARDLAGKQIRVCTIAPGTFDTPLLNRLSDDVRDSLAKIVPHPSRLGQPDEYAKLALSIIDNGMLNGETIRLDGAIRMSPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQN3</accession>
    <name>A0A0Q8VQN3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ZnF_CDGSH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_01270</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896657.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59684">
        <property type="protein sequence ID" value="KRC59684"/>
        <property type="gene ID" value="ASE19_01270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2002590at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043231">
        <property type="term" value="C:intracellular membrane-bounded organelle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.5.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018967">
        <property type="entry name" value="FeS-contain_CDGSH-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042216">
        <property type="entry name" value="MitoNEET_CISD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09360">
        <property type="entry name" value="zf-CDGSH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00704">
        <property type="entry name" value="ZnF_CDGSH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ZnF_CDGSH" evidence="3">
        <location>
            <begin position="19"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="74" mass="8147" checksum="F00B0F45DFEB5779" modified="2016-01-20" version="1">MSPRRVSVVECPGGPLLVRGADEVVGIDGVPTQTERAVVALCRCGRSDRLPWCDDSHRARRRSKRNKGSSKDED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQX7</accession>
    <name>A0A0Q8VQX7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Rieske domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_01400</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896634.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59707">
        <property type="protein sequence ID" value="KRC59707"/>
        <property type="gene ID" value="ASE19_01400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="691776at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044043">
        <property type="entry name" value="VanA_C_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19112">
        <property type="entry name" value="VanA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rieske" evidence="5">
        <location>
            <begin position="15"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC59707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="338" mass="37523" checksum="7DACF9889A51089C" modified="2016-01-20" version="1">MRGRGDTAGYPRNAWYALAAADEIGAEPYGTRALDRPVVLFRATDGTVVALGDRDAHRPYPLSLGRVEGDTIVSGYSGFAYDRTGACVRVPSQEQVPYGARVPSYPVREEGGLVWVWLGERSLAERRLPAPTPWLTDPAWETFGGQWETAANIRLLQDNFGDITHVAVVDPVLAPPALSGVAPVLEVELTETTVSFHRDWPAAPVPGWQAELTGGSATEAYPQREEGAFLSPGLWADRWDVVLPDGTQTFRFTHAITPVDARHTRHLWRVSRNFAPGEHATATMRPMFESYYRKVREILETMQQVIDRDGYGEDVNVAADLAVLQVRRIMRRWVADEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRB8</accession>
    <name>A0A0Q8VRB8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Electron transfer flavoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_04175</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893022.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57005">
        <property type="protein sequence ID" value="KRC57005"/>
        <property type="gene ID" value="ASE19_04175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1885467at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005804">
        <property type="entry name" value="FA_desaturase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001709">
        <property type="entry name" value="Flavoprot_Pyr_Nucl_cyt_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00487">
        <property type="entry name" value="FA_desaturase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00371">
        <property type="entry name" value="FPNCR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="27"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="56"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="87"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="170"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="domain" description="FAD-binding FR-type" evidence="7">
        <location>
            <begin position="324"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="6">
        <location>
            <begin position="581"/>
            <end position="670"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC57005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="670" mass="74202" checksum="EF5F1B1563C6689F" modified="2016-01-20" version="1">MSATTQQPAFAASRLALPDPGEQVPTISWPVVGIFFGALAVFAFSTWAALADVLPVPVTVLLSATAIFVLFTVLHDAAHYSVSTHRWVNVAFGRVAMLFVSPLISFKSFAFIHIEHHRNTNDDDGSDPDHFVSGAPTWQLPFRFPVMDVPYLTFLVRNVRRRPRAEVAETVFLMAVTVSVVVVCALTGHLWTFAVLYLIPERVAMFVLAWWFDWLPHHDLEDTQQENRYRATRNRVGSEWILTPLLLSQNYHLVHHLHPSIPFHRYVATWRRNEEAYLERDAAIGTVFGQQLDPDEYRDWKQLNGRLARILPVRMPRRPAAGAAEFHPVPVASVDRLTDDSVLIRFDVPEGLREEFSFEAGQHVTVRTDLGGQGVRRNYSLCTSATSGELAIAVKHIPGGAFSTFAMEQLRTGDTLDLLTPTGSFGTPLDPLAAKSYVALVAGSGITPALSILQTTLAVETESRFTLVYGNRDADSTMFREELDDLEAQYADRLRIIQVRSRDPRHPAHLRGRIDRSKLEQWLDTDLAMSAVDEWFLCGPVAMVTDLHDVLIERGTEPDRVHVELFHGYQRPKVADGLTPATVAVTLRARQHEVALAAGDTILESALQAGLDAPYACLGGACGTCKAKVLLGSVAMEQNFALSPSVVEAGYVLTCQAHPTTPSVAVDYDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRS0</accession>
    <name>A0A0Q8VRS0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00085</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896912.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59791">
        <property type="protein sequence ID" value="KRC59791"/>
        <property type="gene ID" value="ASE19_00085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1121563at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011195">
        <property type="entry name" value="UCP010256"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008912">
        <property type="entry name" value="Uncharacterised_CoxE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05762">
        <property type="entry name" value="VWA_CoxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF010256">
        <property type="entry name" value="CoxE_vWa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="193"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="367" mass="40187" checksum="A636C02E85637B63" modified="2016-01-20" version="1">MREPDEILLGFATALRAAGVPVTQDRTRSYLDAVALVGLGDRDATRNAGRATLCGTREDIERHDRVFDEWFHRDNTAPTLRPRGVQQRPGVSLLPDAQVDGTSGPEPDDDPIRAAASAVEILRHRDVATLDPTERALLAGMFASLPVRLPRRATARRTPHRRGAVDASRTLRASLRRMGEPDRIHHRRRTTRPRRVVLLVDVSGSMGGYADALLRLAHRIVAAGPGVEVFSLGTRLTHLTRALHRRDPDRAIAAAGDVVPDWSGGTRLGETLQAFLDRHGQRGMARGAVVVVFSDGWERGDPQLLGEQAARLHRLAHTVVWVNPHRGKDGYAPVQQGIVAVLPHVDHFLAGHSLATFAELTEVLARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTC3</accession>
    <name>A0A0Q8VTC3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_24035</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894028.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57394">
        <property type="protein sequence ID" value="KRC57394"/>
        <property type="gene ID" value="ASE19_24035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2045816at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="116"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="147"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="179"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="205"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="228"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="261"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="288"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="348"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="374"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="400"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="433" mass="43528" checksum="477078EAB3EEDE3A" modified="2016-01-20" version="1">MSDDSRNTPEQGGDAPEPIEPPQGAISDGDDQPDGAPSADPGETQPIRSDAPPPPPPPTPVPAEPAPPAQPAPPADSATTAIPVVPPTPVVADDAGRGPLRPELPLRASRAGSTGAIVAVGTGLLAAAVAIAGFRARSDGDLDWSNYGTALAATAALLAIAVLGSLTARAAGGRAREEIVTWPGVAGILSTAVVIGIGIDEDDNWVAYLIGGVMIALAVVGYVAARRAAFVVVAILGLVLIYAVAIDDVLPDSVGEDHPGLLAGVLITLFVVVVTLLGWALPSRAVSGVVVGAIGLIGLVGVMAAFVAFRYLGMFFGAMFSDDEFGTSSDDSMFSGANVDVGFKEADVWWVLALAAVLVVLWALAASLTNHSGFTILAIAAPAILVPLASAAVAAEHPTAWAGVLAGAGGVVLLGGAFLARQRERRTASELSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VV20</accession>
    <name>A0A0Q8VV20_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01360</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59699">
        <property type="protein sequence ID" value="KRC59699"/>
        <property type="gene ID" value="ASE19_01360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="112" mass="12582" checksum="0BA29DA4FAEEF22C" modified="2016-01-20" version="1">MPAMSDPMPEQPRRPVTWREALDRLEAHADRAEQLIRGHAAPHEPPWQPPTDLGPIPDEFVPRARQLLARQQRLMSAIPALMADNHHQRKVANRVADATSAPAHPVYLDITA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYE6</accession>
    <name>A0A0Q8VYE6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01690</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59757">
        <property type="protein sequence ID" value="KRC59757"/>
        <property type="gene ID" value="ASE19_01690"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="192" mass="20486" checksum="DC39A1754AC4E993" modified="2016-01-20" version="1">MNATDEAPSDELVEAGGSAGSLDVRVRRPSAEAPSWVRGGRGRWALPAVLAVLAVALFVVNRGHDVDADAGPQARKVLAGHVEQLLTYDYRRLDDELATESTWLGGSFADQYQALVNDKIGPAATRAKVVTEARISASGVVSSSSDEVKILFFVNVTTRSSELDQPRTQGSRLVVTGQKVDGDWLITALDPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZ30</accession>
    <name>A0A0Q8VZ30_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amino_oxidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01615</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896595.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59744">
        <property type="protein sequence ID" value="KRC59744"/>
        <property type="gene ID" value="ASE19_01615"/>
    </dbReference>
    <dbReference type="OrthoDB" id="453021at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="225"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="524" mass="56321" checksum="896CD22A369222C9" modified="2016-01-20" version="1">MSTYDYVVVGAGHNGLSAGATLATADRSVCVVEQLAIPGGLSASHAYLPEAPEHLLSLGAMDDMFMAQTPLARELGLARHGYATIPLDHPYGWIDEDGETLLLWRDIRRAIEEIKHFSRADARTYADLQGPINWVMDLVDKLFVQHPSAWGKRDFARYLLRHRPDRATRRLLGGLATLNAFEWISETFESDAMRGLWAYWSSMIGPSDAIGSGAYVLGFAGVHRGPGVLRPRGGMSGLVRAMQGVLEEHGGELRLSSPVAEILVEGGRAIGVRLADGAALKARYGVLSNLAPQVTFGPLLAPEHLSRAEHNRVAMVPSNSINVAAFKIDVATGGRVGFPAAELRRSKRDDADVRKATLMTGTLEDHIAQMRAMKVGLNTEDPPVYMAILSAVDPTIAPDGGDVLYLNSNVPLRPDGGWETSKDAITDAVWKSAQRFLGGTDTEIGRVVSSPADFESRFAAPAGAFFHVDMLVNRLGPSRPARGFGGYDTPVPGLYLAGAAAHPSGGVTGWPGRLAAQHALRQER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZN2</accession>
    <name>A0A0Q8VZN2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22930</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892567.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58919">
        <property type="protein sequence ID" value="KRC58919"/>
        <property type="gene ID" value="ASE19_22930"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="112" mass="11689" checksum="CCDEB1F44825CAA4" modified="2016-01-20" version="1">MSHTLGTTTTGRLSTFWLTTWITAASVVVQLLVILAVVGSVDSANPTVQGAAPQDFWQPLCFAVAVQVAVTGLLLALWRPTRQVGLGMMWGTLGAFGAFVAYAAFSLAAMGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM98</accession>
    <name>A0A0Q8UM98_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Maltokinase</fullName>
            <ecNumber evidence="5">2.7.1.175</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Maltose-1-phosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_19820</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + D-maltose = ADP + alpha-maltose 1-phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:31915"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17306"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:63576"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.175"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Glycan biosynthesis; glycogen biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the aminoglycoside phosphotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.175" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46122">
        <property type="protein sequence ID" value="KRC46122"/>
        <property type="gene ID" value="ASE19_19820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="268166at2"/>
    <dbReference type="UniPathway" id="UPA00164"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005978">
        <property type="term" value="P:glycogen biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040999">
        <property type="entry name" value="Mak_N_cap"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18085">
        <property type="entry name" value="Mak_N_cap"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mak_N_cap" evidence="8">
        <location>
            <begin position="5"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00031251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF18085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="436" mass="47317" checksum="260E25B1B0CA564E" modified="2016-01-20" version="1">MIKPFLERSRWFGGKGRTFEVTGTEQVGTVGGTPAVAVVLAEVTYTEGDVELYQIPLALYDEPQDRLEHALVGTWQDRVAYDAVQDRDAMAGYLRAFASDDAGGLRFVRLEGHDLDLDATASLFSGEQSNSSVFFGEDSVLKLFRKVTPGENPDVTTHRALTEAGSTHVAALYGWIERDDTQLGMLQQFLRTASDGWGQALASVRDLFAEGDLHAEEVGGDFAGEAARLGEALAEVHQQLRESFPVSTVDASALAELMTQRLDAAIGVVPQLADHAEGARAVFAAVAGLGEVPVQRIHADLHLGQTLRTVAGWKFVDFEGEPAKTLAERLLADSPWRDVAGMTRSFDYAPHAVAASLPEDSPDEARQRAVRADEWARRNRRAFLASYCGEGGLGPADRALLTAYVVDKAVYECLYEARNRPTWLSIPLAGVARLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMA7</accession>
    <name>A0A0Q8UMA7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Homoserine O-succinyltransferase</fullName>
            <shortName evidence="2">HST</shortName>
            <ecNumber evidence="2">2.3.1.46</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Homoserine transsuccinylase</fullName>
            <shortName evidence="2">HTS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">metX</name>
        <name evidence="2" type="synonym">metXS</name>
        <name evidence="5" type="ORF">ASE19_19895</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-homoserine + succinyl-CoA = CoA + O-succinyl-L-homoserine</text>
            <dbReference type="Rhea" id="RHEA:22008"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:57476"/>
            <dbReference type="ChEBI" id="CHEBI:57661"/>
            <dbReference type="EC" id="2.3.1.46"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; O-succinyl-L-homoserine from L-homoserine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AB hydrolase superfamily. MetX family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.46" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895910.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46134">
        <property type="protein sequence ID" value="KRC46134"/>
        <property type="gene ID" value="ASE19_19895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="536745at2"/>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008899">
        <property type="term" value="F:homoserine O-succinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00296">
        <property type="entry name" value="MetX_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008220">
        <property type="entry name" value="HAT_MetX-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32268">
        <property type="entry name" value="PTHR32268"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000443">
        <property type="entry name" value="Homoser_Ac_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01392">
        <property type="entry name" value="homoserO_Ac_trn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="4">
        <location>
            <begin position="48"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2 3">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <feature type="active site" evidence="2 3">
        <location>
            <position position="312"/>
        </location>
    </feature>
    <feature type="active site" evidence="2 3">
        <location>
            <position position="345"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="346"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for acyl-CoA specificity" evidence="2">
        <location>
            <position position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000443-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="364" mass="39615" checksum="841BE3D90A812CB6" modified="2016-01-20" version="1">MTDSVGVVATQRAVLTQRGPLVLASGAELAHVEVAYETYGELNAARDNAVVVCHALTGDAHAAGWHEGARRPGWWDNLIGPGKALDTQRLFVVSANLLGGCSGTTGPQSIDPATGRAYGPDFPLLDMADLVAAHRGLLDHLGIDRLHAAVGGSLGGMQVLEWALQEPDRIDRAVLVAASSRLTTENIAFSSVARAAILEDPDFHAGRYAEHGVTPRHGLKVARMMAHITYVSGSSLEAKFGHRRATSGLAKRLDADFEVEDYLQHQGESFLRRFDALSYLHLTRPMDYFDPFGSHPGVVPSTRFRLLSFDSDWRFPTTHSLRIRDELAARGVAVAHTEISSPWGHDSFLLEPPGYHDMVAEFLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMK9</accession>
    <name>A0A0Q8UMK9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cobalt ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_20470</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896001.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46230">
        <property type="protein sequence ID" value="KRC46230"/>
        <property type="gene ID" value="ASE19_20470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1479665at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006824">
        <property type="term" value="P:cobalt ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003339">
        <property type="entry name" value="ABC/ECF_trnsptr_transmembrane"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012809">
        <property type="entry name" value="ECF_CbiQ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02361">
        <property type="entry name" value="CbiQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02454">
        <property type="entry name" value="ECF_T_CbiQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="43"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="230" mass="25183" checksum="F5A9C8A7B7D3C5A9" modified="2016-01-20" version="1">MGAGHGHRLHFHGHSPVHRAPAHLKVLALLAFVLLVVATPRDWYPVFALHLAVLLGVVALARVPLGYLLPRMVVEVPFLLFAALIPFVAEGPRVGVPMPGGWELSLSEHGLVAAWGLAVKGTLGVLASLTLAATTEPNEVLRGLQRLRFPDLLVQIMSFMVRYLDVVTADLGRMVTAMRSRGVDPRSPRHWPALARTLGALFVRSYERGERVHLAMLSRGYDGKLPETVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMQ1</accession>
    <name>A0A0Q8UMQ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">UDP-galactopyranose mutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_20800</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UDP-galactopyranose/dTDP-fucopyranose mutase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46283">
        <property type="protein sequence ID" value="KRC46283"/>
        <property type="gene ID" value="ASE19_20800"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008767">
        <property type="term" value="F:UDP-galactopyranose mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004379">
        <property type="entry name" value="UDP-GALP_mutase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015899">
        <property type="entry name" value="UDP-GalPyranose_mutase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03275">
        <property type="entry name" value="GLF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00031">
        <property type="entry name" value="UDP-GALP_mutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GLF" evidence="4">
        <location>
            <begin position="159"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="400" mass="45380" checksum="BC05657397E5DE94" modified="2016-01-20" version="1">MTLTSSSPGLPDLVVVGSGFFGLTIAERCANDLGLKVLVIERRSHLGGNAYSEPEPETGIEVHKYGAHLFHTSNERVWEYVNRFTSFTGYQHRVYSTHNQQVYPLPINLGTINQFFDAAYTPDQARALIKEQASELGGKEPENFVEKGVSLIGRPLYEAFIAHYTAKQWQTSPEELSADIISRLPVRYNYDNRYFNDKYEGLPTDGYAAWLARMADHPNIEVVLETDFLADGVADAYKGKVPIVYTGPVDEYFANCEGRLSWRTVDLVPEVLDVDDFQGCSVMNYPDPDVDFTRIHEFKHFHPERTYPEGKTVIVREYSRFAEDTDEPYYPVNTAEDREKLLKYRDLAEREPMVLFGGRLGTYKYLDMHMAIASALSMYDNTLRPHFADGAELKSGGVDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMS9</accession>
    <name>A0A0Q8UMS9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20670</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896031.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46260">
        <property type="protein sequence ID" value="KRC46260"/>
        <property type="gene ID" value="ASE19_20670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="27"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="238" mass="25934" checksum="026C7978FA84D586" modified="2016-01-20" version="1">MAKASVSKLVPKVPGVAGATRRAAYSASTKRALVDVAEKLFAEKGYAATSLDAIVAGARVTKGALYHHYSGKQALFEAVFERVEQESSKRIQKALRAERDPWLKAIEGLRSFLQVVQETGYRRIVIQDGPAVLGYERYREQEERSTYANIVEIVRATLEAGSWELDEPMLQTFSRIFFGAMSSAGESVATSEDPEAAAGRVESAIGFLLAGVQSLVEQGHEMPTVFDTVELAEADEDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNF1</accession>
    <name>A0A0Q8UNF1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22145</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SIMIBI class G3E GTPase family. ArgK/MeaB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896286.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46518">
        <property type="protein sequence ID" value="KRC46518"/>
        <property type="gene ID" value="ASE19_22145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1134430at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005129">
        <property type="entry name" value="GTPase_ArgK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23408">
        <property type="entry name" value="PTHR23408"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00750">
        <property type="entry name" value="lao"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AAA" evidence="2">
        <location>
            <begin position="51"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="33780" checksum="FBB1C1BC1581ABC5" modified="2016-01-20" version="1">MDAAGLLEGIREGRRAQVARAITLVESTAPRHRVAARELLTELAAAGDGPQAVRVGISGVPGVGKSTFIEALGSRLTAEGHKVGVLAVDPSSVRTGGSVLGDKTRMAQLSADPNAFIRPSPSAGTLGGVARATTQAMSVLEAAGYDVVLVETVGVGQSEVTVAGMVDTFLFLTLARTGDQLQGIKKGILELADVIAVNKADGDREQEARAAARELAGALRLVRGHAEWAAPVVTCSGLTGTRVDEVWDQVLAHRDHLGTDGLARKRAAQQLDFTWALVRDELDQRLRHNAGVRAVQDEVRAAVLDGELTAPLAADRILAAYDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNJ9</accession>
    <name>A0A0Q8UNJ9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11 12">Xylose isomerase</fullName>
            <ecNumber evidence="4 11 12">5.3.1.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">xylA</name>
        <name evidence="15" type="ORF">ASE19_22470</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10 11 12">
            <text>alpha-D-xylose = alpha-D-xylulofuranose</text>
            <dbReference type="Rhea" id="RHEA:22816"/>
            <dbReference type="ChEBI" id="CHEBI:28518"/>
            <dbReference type="ChEBI" id="CHEBI:188998"/>
            <dbReference type="EC" id="5.3.1.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="11">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 11 13">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11 13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11 12">Belongs to the xylose isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.5" evidence="4 11 12"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896339.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46570">
        <property type="protein sequence ID" value="KRC46570"/>
        <property type="gene ID" value="ASE19_22470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="481478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009045">
        <property type="term" value="F:xylose isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042732">
        <property type="term" value="P:D-xylose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00455">
        <property type="entry name" value="Xylose_isom_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013453">
        <property type="entry name" value="XylA_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001998">
        <property type="entry name" value="Xylose_isomerase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00688">
        <property type="entry name" value="XYLOSISMRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02631">
        <property type="entry name" value="xylA_Arthro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51415">
        <property type="entry name" value="XYLOSE_ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 11 12" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="6 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8 11 12" id="KW-0413">Isomerase</keyword>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 11 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 12" id="KW-0859">Xylose metabolism</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="14">
        <location>
            <begin position="41"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="182"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="218"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="246"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="288"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00018232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00033659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU000610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC46570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="390" mass="42751" checksum="F65704C2DA8093E6" modified="2016-01-20" version="1">MNRPVPTPADKFSFGLWTVGWEARDPFGDATRAPMDPVHALEQLAAIGAYGVNFHDDDLIPFGSDDATRDGIIERFRKGLADTGLVVTTATTNLFTHPVFKDGAFTSNNRDVRRFALRKVMRNLDLAAELGAKVYVCWGGREGAEYGAAKDVPAALDRYQEAFNVLGEYVVDQGYDLRFAIEPKPNEPRGDILLPTVGHALAFIETLDRPELVGLNPEVGHEEMAGLNAAAGYAQALWQDKLFHIDLNGQNGPKYDQDLRFGAGNVRGAFWVVDTLVSGGYDGPVHFDYKPVRPETEAGVWASAKACIDNYLILRDKVTAFRADPEVQAALVEAELPELARPTLADGEGWRGLLEWTLPDAAAIEALATREVAMEKLDQLALEHLYGVRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNN6</accession>
    <name>A0A0Q8UNN6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Tyrosine recombinase XerC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">xerC</name>
        <name evidence="13" type="ORF">ASE19_19990</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the 'phage' integrase family. XerC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896372.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46603">
        <property type="protein sequence ID" value="KRC46603"/>
        <property type="gene ID" value="ASE19_19990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="745068at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009037">
        <property type="term" value="F:tyrosine-based site-specific recombinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01808">
        <property type="entry name" value="Recomb_XerC_XerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023009">
        <property type="entry name" value="Tyrosine_recombinase_XerC/XerD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02899">
        <property type="entry name" value="Phage_int_SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3 9" id="KW-0132">Cell division</keyword>
    <keyword evidence="4 9" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="2 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0229">DNA integration</keyword>
    <keyword evidence="7 9" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="6 9 10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="12">
        <location>
            <begin position="1"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="11">
        <location>
            <begin position="105"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="173"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="244"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="247"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="270"/>
        </location>
    </feature>
    <feature type="active site" description="O-(3'-phospho-DNA)-tyrosine intermediate" evidence="9">
        <location>
            <position position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC46603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="298" mass="32216" checksum="E6A3F6319E5C74C8" modified="2016-01-20" version="1">MGVLGAYERHLVAERDLAPHTVKAYLADIGGLLDHAARYGLEGVDELDLRTLRSWLARQQSSGLSRTTLARRATAARVFTGWLARTGRARADVGSSLGSPKPHRTLPDVLRVDEARDLIAAATELADDGSPVGLRDVAMLELLYATGMRVGELCALDVDDLDRDRNVVRVFGKGRKERTIPFGAPAAVALDRWTVGGRPQLARPGSGGALFLGARGGRIDQRAVRTLVHRRLADVPGAPDLGPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQRYTHVTTDRLRRAYQQAHPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNU0</accession>
    <name>A0A0Q8UNU0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_22125</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46650">
        <property type="protein sequence ID" value="KRC46650"/>
        <property type="gene ID" value="ASE19_22125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="134"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="166"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="212"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="261"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="288"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="314"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="344"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="386" mass="39993" checksum="2B740CCF4B7202F2" modified="2016-01-20" version="1">MQAWLPTVRDTALAILLALIVGAVLIAISDEDVINSLEDLFAHPGSFFVYAGDVVRHSFGAVFDAYKALLDGAFGSGSALRRTLERSAPLICAGLGVALAFRAGLFNIGAQGQMLVGALAAGYVGFTFDMPPVIHLGAALAAALIASSLWGGIVGLLKARTGAHEVITTIMLNFVGRFTVLYFLAKESFQRPGSDNLLSPPVDDDATFPTVFGLHLGIPLAILAAGGVWWLLERSRLGFEMRAVGANPEAARTAGMSIGKVYVLTMAITGALSGLAISMTVLGLHQSITDQVVGSVGFDAITVALLGRATPHGTVLAGLLFGALSAGGLGMQTQAGVPPELINVVQALIVLFVAAPALVRGLARLERRKKKADKAKAARTGQEVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8USF7</accession>
    <name>A0A0Q8USF7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22465</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ROK (NagC/XylR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896338.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46569">
        <property type="protein sequence ID" value="KRC46569"/>
        <property type="gene ID" value="ASE19_22465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1130699at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000600">
        <property type="entry name" value="ROK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18964">
        <property type="entry name" value="PTHR18964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00480">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="390" mass="38553" checksum="883C62BB3FD3C14A" modified="2016-01-20" version="1">MADTSGPDSLRRRNAAAVVRSLRTDGPASRAELAGRTGLAKATVGTIAAGLEDAGVVRELSQVRNGERGRPGQLLTLEGGRPVGLGFEVNVEYVAAVVLDLAGTVRRDVTRPVGSGGVVAALAALAESLAGDLAAAGLTPEGATVAVPGLVGGDDRTAVWVPNLDVAGTAVADAVDTALGWSGRTRVTNDADCSALAELHHGAGRGAGHLLYLTGTVGIGAGLVDDGRLLRGARGFAGEVGHLPVGEPTARCGCGRTGCWEASVGLHALLAAVGRPEAGTPQETAAAVALAASSSPAVREGVASVARWLGRGLGVVTGVVDPGTIVLGGYFAPLGDLVLIPAAEELAATLASSALGVPDLRLGELGTGSASTGAAERALEHVLSGTSDLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU64</accession>
    <name>A0A0Q8UU64_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17380</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893114.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48709">
        <property type="protein sequence ID" value="KRC48709"/>
        <property type="gene ID" value="ASE19_17380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1412344at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="120" mass="13549" checksum="9698AB9B8402598A" modified="2016-01-20" version="1">MALPERDVLLCRDCCCGTAKKHPSVDHRAQRDEIEALDDPAGRRGPRVRVRVVDCLDECDRSNVVLVRDFTWNPGGRRPKDFWLGGVLSEESTEAVAEWVREGGPVPKSLERHVFRGKRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUA3</accession>
    <name>A0A0Q8UUA3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17505</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893134.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48730">
        <property type="protein sequence ID" value="KRC48730"/>
        <property type="gene ID" value="ASE19_17505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1602988at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001900">
        <property type="entry name" value="RNase_II/R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040596">
        <property type="entry name" value="RNase_II_C_S1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18614">
        <property type="entry name" value="RNase_II_C_S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00773">
        <property type="entry name" value="RNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00955">
        <property type="entry name" value="RNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNB" evidence="1">
        <location>
            <begin position="52"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="477" mass="50978" checksum="1DABFB7B02225F6A" modified="2016-01-20" version="1">MPNNLVVRVNASSPTLQAGLQAIAQELELPGEFPADVTAAAEQAAADVVLPELDRTDLPFITIDPAGSMDLDQAVHVERAGSGFVVHYAIADVAAFVRPGDPVDLEANRRGETLYGAGTRIPLHPPALSEAAASLLPEQVRPALLWTIEVDAAGALGKVHVERARVRSTARWSYVDAQAALDDGTAGEVLLLLREVGRLREQQEVDRGGISLPLPEQEIDESDGSFRLVFRQQLPVEQWNAQISLLTGIGAASLMVGAKVGLLRTLPPPDPRDVARLRRVAKGLRVDWPSDWEYPELVRSLDPTISQHQAMVVACTRLLRGSGYAAFDGQLPEQTRHSAIAAEYAHVTAPLRRLGDRYAGETCLAICAGTPVPDWVREALPGLPKTLQDSARRASAYGRAVLDLVEAAVLADRVGEEFDGVVTSVREDDPAQGVVVLAEVGVEAPVSASQPLPLGEDVKARLTTADVAARKVAFTVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUP7</accession>
    <name>A0A0Q8UUP7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17335</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893109.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48703">
        <property type="protein sequence ID" value="KRC48703"/>
        <property type="gene ID" value="ASE19_17335"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="53"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="454"/>
            <end position="530"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="543" mass="58214" checksum="BE3964E0D3E9F887" modified="2016-01-20" version="1">MGTIANRVKDAGTSLRILTESGIVRPYSPLVVGGMVQALVQWSTTPAGGFKTIALRMPQATAIIDERGSLTFAELQARTNALAHGLRERGVKTGDGVAVMCRNHRGFIEASIAISKLGADVLYLNTAFAGPQLADVIAREKPRVVVHDEEFTDLLAGADIADRVLGWTDGEAGPDSLDGIIDAATAADRTGDLKAPDRKGRTIILTSGTTGTPKGAPRPQGGLPAAISLLSRMPLKSGWKCHVAAPLFHTWGFAHYQLAMMLGTTLVLTRKFDPEGALKVLHDEKCDSFAVIPVMLQRILALPEGTLEKYPLPHLKAVASSGSALPGDLPTQWMDRYGDNLYSIYGSTEVAWASIADPKDLREAPGCAGRLPHQTVVRILDADGREVPTGQSGRIFVGNSLQIEGYTGGGGKEMIDGLMSSGDVGRFDADGRLYVEGRDDEMIVSGGENVFPKEVEDCLATHERVAEVAAIGVDDPEFGKRLRAFVVRVPDAEPVSSEELKDLVKINLARYKVPREIVFLDELPRNATGKVLKRELAALEPDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWA8</accession>
    <name>A0A0Q8UWA8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">GMP synthase [glutamine-hydrolyzing]</fullName>
            <ecNumber evidence="9">6.3.5.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">GMP synthetase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Glutamine amidotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9 12" type="primary">guaA</name>
        <name evidence="12" type="ORF">ASE19_22505</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Catalyzes the synthesis of GMP from XMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + H2O + L-glutamine + XMP = AMP + diphosphate + GMP + 2 H(+) + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:11680"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57464"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.5.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Purine metabolism; GMP biosynthesis; GMP from XMP (L-Gln route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.2" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896345.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46576">
        <property type="protein sequence ID" value="KRC46576"/>
        <property type="gene ID" value="ASE19_22505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="504464at2"/>
    <dbReference type="UniPathway" id="UPA00189">
        <property type="reaction ID" value="UER00296"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003922">
        <property type="term" value="F:GMP synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016462">
        <property type="term" value="F:pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01742">
        <property type="entry name" value="GATase1_GMP_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01997">
        <property type="entry name" value="GMP_synthase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00344">
        <property type="entry name" value="GMP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001674">
        <property type="entry name" value="GMP_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004739">
        <property type="entry name" value="GMP_synth_GATase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022955">
        <property type="entry name" value="GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025777">
        <property type="entry name" value="GMPS_ATP_PPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022310">
        <property type="entry name" value="NAD/GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00958">
        <property type="entry name" value="GMP_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02540">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00884">
        <property type="entry name" value="guaA_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00888">
        <property type="entry name" value="guaA_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51553">
        <property type="entry name" value="GMPS_ATP_PPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 9" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="5 9 10" id="KW-0332">GMP biosynthesis</keyword>
    <keyword evidence="3 9 12" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 9 10" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMPS ATP-PPase" evidence="11">
        <location>
            <begin position="204"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="9">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="232"/>
            <end position="238"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00344"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC46576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="528" mass="56877" checksum="8E46B1A540FE5B3F" modified="2016-01-20" version="1">MTEAAQTQHEHDLVLVVDFGAQYAQLIARRVREARVYSEIVPHTMPVAEMVARNPKAIILSGGPSSVYADGAPAIDPAVFTSGPAVFGMCYGFQLMARGLGGTVSATGAREYGRTRVSVSQGGTLLEGIPAEHNVWMSHGDSVSAAPQGFTVLASTEVTPVAAFEDVDRGLAGVQWHPEVLHSEHGQRVLEHFLWDIAGCRQTWTIGNIAEEQIARIREQVGPEGRAICGLSGGVDSAVAAAIVQKAIGDRLTCVYVDHGLMRKGETEQIERDFVAATGAKLVIVDAEKQFLDALAGTSEPEAKRKIIGREFIRAFEGAELEVIKDAPEGSKVGFLVQGTLYPDVVESGHGSGTSTIKSHHNVGGLPEDLEFELVEPLRELFKDEVRAVGAQLGLPNVIVQRQPFPGPGLGIRIIGEVTRERLDILREADAIAREEMTAAGLDGDIWQMPVVLLADVRSVGVQGDGRTYGHPVVLRPVTSEDAMTADWARLPYDVLEKISTRITNEVAEVNRVTVDITSKPPGTIEWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UX72</accession>
    <name>A0A0Q8UX72_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21900</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896246.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46477">
        <property type="protein sequence ID" value="KRC46477"/>
        <property type="gene ID" value="ASE19_21900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1515911at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="136"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="198"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="225"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="280"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="21"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="164"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="311" mass="31670" checksum="35B3AABDC03B0F8D" modified="2016-01-20" version="1">MSVQSSAIAPRAHPLSTVPAGLGWGVLGVAAFSFTVPLTRVAVGELSPLFIGAGRAVVAATLAAIALGVTRQALPRGRQWWRLVVVAGGVVAGFPLLTTYALTEVPASHGAVVIALLPAVTAVLAVLRTGERPTRSFWAFSACGALAAVGFAVVQGGGVSGIHRADLLLFAGVLVCATGYAEGGLLTRELGSWQTISWALVVALPLMATLTAASVVRQPPSGGPAAWACFAYLAVVSMFLGFFAWYRGLAIGPMAQVSQVQLVQPVLSITWAGLLLGEQITAATVVGGLAVILLAGGATSSRARTVRARPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXY5</accession>
    <name>A0A0Q8UXY5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Beta-lactamase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16235</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893624.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50156">
        <property type="protein sequence ID" value="KRC50156"/>
        <property type="gene ID" value="ASE19_16235"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001466">
        <property type="entry name" value="Beta-lactam-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00144">
        <property type="entry name" value="Beta-lactamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta-lactamase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="433" mass="45907" checksum="93E5A050F96F3F26" modified="2016-01-20" version="1">MTTPYDERLAALQGAGRLPSVVAGVALGGACTWTGCVSVLPDAPELSVGSAYRIGSITKTLTAVLVLQLRDEGRLDLTDPVGRFVPETGYAPVTLRQLLSHTGGLQSEPAGSWWERVEGGSFDALMAANDGSGRVASAGELYHYSNLGFALLGEVVARLRGASWWEVVQQRLLGPLGMSATSYRTPRDHAPGRSVDHFAHTLTAEPHADTGAMAPAGQLWSTVADLLRWADFLAAGHPDVLAVETLAEMAAPADDDVDAYGLGLRRLQVGERTWIGHTGSMPGFQASLFVDRATRDAVVALADATTGLRPELVPATLTGLLPAPAASRWTPSSSPVPGEVASLLGLWFWGNTGFGFEWIDGELVARDLRTAELHERFVAGPDGWLGTEGYHRGERLLVRRGPAQEVASLECATFVYTRTPYAPGVSIPGGHPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY21</accession>
    <name>A0A0Q8UY21_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">IMP dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_16405</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893655.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50187">
        <property type="protein sequence ID" value="KRC50187"/>
        <property type="gene ID" value="ASE19_16405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="787596at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PKS_ER" evidence="3">
        <location>
            <begin position="7"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="338" mass="35316" checksum="4BBB1D34899C317E" modified="2016-01-20" version="1">MRATTIHAARDIRVEDVAVPTIKKPTDAIVRVTAGCICGSDLWPYRGENPIRPGATIGHECIGVVEEVGSEVRDFKAGDYVVVPFCHCDNTCAHCRAGAQSACVNLGMTSSGQAEYARVNQADGSLVATGGTPPDDLLASVLALTDVMPTGWHAAVCAGVREGGTAVVVGDGAVGLCGVLAASVMGAERIIAMSRHEPRQEIARAFGATHVVAARGKEGIAEVMEITGGLGVDAALECVGTDESMKTAISVTRPMGGVGFVGVPHGVELPVRTLFEKNIGLRGGIAPVRHYLPELLALVQDRTIDPGKVFDLTLPLEDAAEGYRAMDERRAIKVMLTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY97</accession>
    <name>A0A0Q8UY97_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893532.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50063">
        <property type="protein sequence ID" value="KRC50063"/>
        <property type="gene ID" value="ASE19_15700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2164011at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359535" evidence="1">
        <location>
            <begin position="28"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="141" mass="14724" checksum="549482FCC00D06BE" modified="2016-01-20" version="1">MARVALALAALALVCSGCSDDPEQTGADPSAPVTDITVECDRFADTAQRIAEAQAALYDGKDSPEDATAVDDLVTELDALKEEAPDDVDEALTGLGEGFRSAQELLADPTPENTAELAALSPKLSEDSQAVTAWILRECES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYA0</accession>
    <name>A0A0Q8UYA0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Histidine phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16675</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893704.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50235">
        <property type="protein sequence ID" value="KRC50235"/>
        <property type="gene ID" value="ASE19_16675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1122642at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022492">
        <property type="entry name" value="Phosphomutase_MSMEG4193_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03848">
        <property type="entry name" value="MSMEG_4193"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="233" mass="24500" checksum="639CCF9021183BCE" modified="2016-01-20" version="1">MATLLLVRHGRTTANASGLLAGRTPGVLLDELGTEQAARAGARIAAVPVVRLVTSPQERCKQTAKAVADGQRGAGHPVTRATTEKALAECDYGDWQGQAIKTLLKEPLWRTVQQQPSAVTFPGGESMVAMQHRAVAAVRRLDAAITAEHGSDAVWVAVSHGDIIKSVLADALGLHLDLFQRINVDPASISVVRYAADRPYVLATNTHDGDLSWLRKAPPKDEGAVVGGGSGPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYB3</accession>
    <name>A0A0Q8UYB3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA_edit domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16730</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893714.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50245">
        <property type="protein sequence ID" value="KRC50245"/>
        <property type="gene ID" value="ASE19_16730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1503081at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.960.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036754">
        <property type="entry name" value="YbaK/aa-tRNA-synt-asso_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007214">
        <property type="entry name" value="YbaK/aa-tRNA-synth-assoc-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04073">
        <property type="entry name" value="tRNA_edit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55826">
        <property type="entry name" value="SSF55826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA_edit" evidence="1">
        <location>
            <begin position="27"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="16397" checksum="1351DA2E70FD1151" modified="2016-01-20" version="1">MSDPTDQSARALAAAEALGLTFTVTRHGPVRSLEEAAEVRGIEPRQIVKTMVVRVAEGDHRFVLVPGDREIAWAKLRALLGVNRLSMPPADAAREVTGYVRGTITPLGSLTALPVIADERVTGEISIGGGAHGVALTVDGAALVVALGATVADVTDLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYE3</accession>
    <name>A0A0Q8UYE3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetoin dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893752.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50283">
        <property type="protein sequence ID" value="KRC50283"/>
        <property type="gene ID" value="ASE19_16950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1582456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="272" mass="29244" checksum="4C91E21570B99258" modified="2016-01-20" version="1">MKDFRGRVAVVTGAGSGIGRALAVELAREGARLALSGRRIATVEETAQLCRELGAEARAYELDVSDRDAVLKHADEVVADFGGVNLVINNAGVSLTASVEEVTWEDLHWIFDINFWGTVHGTKAFLPYLIASGDGHIANISSMFGLVACPTQSGYSSSKFAMRAFTDSLRQEMKLYGHAVGVSSVHPGTILTEIARKARAADGRDVDELASNFERMAKTSPETAAKVTLAGIRKDRAMVYIGGDAKFLNALQRVSGSGYQKVLTAMFRKDLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZQ7</accession>
    <name>A0A0Q8UZQ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19190</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49129">
        <property type="protein sequence ID" value="KRC49129"/>
        <property type="gene ID" value="ASE19_19190"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046165">
        <property type="entry name" value="DUF6167"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19664">
        <property type="entry name" value="DUF6167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="101" mass="11021" checksum="E86EEE5B7770BCC9" modified="2016-01-20" version="1">MRTGVVFSAGVAAGVYGVVKVRRVAEAFTPDGMRDRIGAAVLGARMFRDEVAQGQADAETHLRERYRALESGARADRRPELDTRTATTAPMAALKDKEEDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1A7</accession>
    <name>A0A0Q8V1A7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA glycosylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15145</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896487.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51420">
        <property type="protein sequence ID" value="KRC51420"/>
        <property type="gene ID" value="ASE19_15145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2034230at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000700">
        <property type="term" value="F:mismatch base pair DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006285">
        <property type="term" value="P:base-excision repair, AP site formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10028">
        <property type="entry name" value="UDG-F2_TDG_MUG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015637">
        <property type="entry name" value="MUG/TDG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005122">
        <property type="entry name" value="Uracil-DNA_glycosylase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036895">
        <property type="entry name" value="Uracil-DNA_glycosylase-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12159">
        <property type="entry name" value="PTHR12159"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03167">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00986">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52141">
        <property type="entry name" value="SSF52141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDG" evidence="1">
        <location>
            <begin position="27"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="201" mass="21636" checksum="91070B9D78EED7CB" modified="2016-01-20" version="1">MTPAQRRSFTRAELESYRDAVVPDLLPNAPGQQLRLLFVGINPGLWTAATSTHFAHPGNRFYPALLRAGVITEPIDPANGMDEAERDVLRNRGIGISNVVHRATAKAAELSDEELRAGGVQLTDLVARERPRVVAIAGITAYRTAFGLPKAKPGRQPDTLDDLWSGAELWVVPNPSGLNAHETVDSLAAAYREVGEAAGII</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2W8</accession>
    <name>A0A0Q8V2W8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GAF domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17020</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50297">
        <property type="protein sequence ID" value="KRC50297"/>
        <property type="gene ID" value="ASE19_17020"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GAF" evidence="1">
        <location>
            <begin position="53"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="525" mass="55622" checksum="86F782CA28CB69FC" modified="2016-01-20" version="1">MEAADSGQPLALGQVEFEDLVREVLDRMHGALDQQARLQLLLDAVVTISADLSLDGVLSRIVAIASRLVDARYAALGVLSAGRQRRLRTFIHHGISGELAAEIGELPTGHGLLGLIIDRPEPLRLRDIAEHPASYGFPDNHPPMSSFLGVPVRIRDRVFGNLYLTEKAGGGDFTTQDEEIVVALAAAAGVAIENARLYEETTARETWALATAALGSALADPDPADDPVGDLVAQARGLAGADAAWVEITSEDGTSQVLARCGDGGLADEGPVLAVPFSPSSESTGRLSLAWSLEHEDRFHVLDAKAVATYAEQATLSLQLAEAREEHRRLAVFEDRDRIGRDLHDLVIQRLFAVGLGLQGATRLVQKPEVAARIEQAVDDLDATIKDIRRAIFGLSSLESAGDVQAEVTSLVDRAAATLKFRPSLTFEGPVRTLVPDDVVPDLLAVLAEGLSNASRHAGASAVEVVLEAGDAVVLTVRDNGRGMSATVTESGLANIRVRAEQRGGTLVVQSPPAGGTALVWSVPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V326</accession>
    <name>A0A0Q8V326_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18940</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48976">
        <property type="protein sequence ID" value="KRC48976"/>
        <property type="gene ID" value="ASE19_18940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2026755at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="63" mass="7002" checksum="983F55D122E03DAA" modified="2016-01-20" version="1">MWVRPAFVPSELPGLVLDWRSGEKGWEGLVSYADREGRIVTEWLPASNLRPIKTSPNTGSAYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3J7</accession>
    <name>A0A0Q8V3J7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15555</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50035">
        <property type="protein sequence ID" value="KRC50035"/>
        <property type="gene ID" value="ASE19_15555"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="87" mass="9029" checksum="F1904EA2787AE442" modified="2016-01-20" version="1">MRAMREARYAEAQARAATPGTAAKPAARQKPAPAKAVPAKAAPAKAAKAPAPPAESPAADELCGHRNMSGRTCTRERGHAAKSHRYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4X8</accession>
    <name>A0A0Q8V4X8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17560</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893142.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48738">
        <property type="protein sequence ID" value="KRC48738"/>
        <property type="gene ID" value="ASE19_17560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1859752at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016867">
        <property type="entry name" value="GcvR"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028103">
        <property type="entry name" value="GcvR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT" evidence="1">
        <location>
            <begin position="5"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="1">
        <location>
            <begin position="90"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="171" mass="17754" checksum="2B4CC47C4413802C" modified="2016-01-20" version="1">MATFTLTCIGDDRAGLVSELSAPIHAHGASWHRSQMARLGGKFAGILLVDVPDAKAEALAADLRALKDVGLTVTVEQTDVPEVESDVRITLELLGADRPGIVAEVSAALAGQRVSIQELATDVREAPMAGGLLFEAQAVLVAPAGTSVDGLRSMLEAIADELMVEINLSDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V551</accession>
    <name>A0A0Q8V551_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GTP pyrophosphokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893235.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48834">
        <property type="protein sequence ID" value="KRC48834"/>
        <property type="gene ID" value="ASE19_18110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="270865at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015969">
        <property type="term" value="P:guanosine tetraphosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05399">
        <property type="entry name" value="NT_Rel-Spo_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007362">
        <property type="entry name" value="DUF429"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007685">
        <property type="entry name" value="RelA_SpoT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04250">
        <property type="entry name" value="DUF429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04607">
        <property type="entry name" value="RelA_SpoT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00954">
        <property type="entry name" value="RelA_SpoT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RelA_SpoT" evidence="1">
        <location>
            <begin position="303"/>
            <end position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="576" mass="63120" checksum="B8C7A6A00F43F451" modified="2016-01-20" version="1">MHYVGVDLAWGERKPTGLAVLDATGHLLAVSAVRTDEEIVAALAPYVAEECLVAIDAPLIVRNPTGNRPAEKQLNKDFARFDAGAHPSNTGKPEFAEQPRAARVAALLGLDINPWSGRQRRGIEVYPHPATVALFRLGRTLKYKDKPGRDLEQLRAELFVLMRLVEGLASAEPALHVDVPAWRALRQGVADAARKSELRVVEDQVDAVVCAYVAMFADLRRNDTVVYGDLESGYIVTPALPDDLAPTPRRKRTATTPAGPDIGAAVRAYADGWAEVRAATDDYVRLVTSILDEAGINYLTVTGRAKSITSFAAKAARTSGGHPVFSDPLAEITDQIGIRVITYVHSDVQAVAELLADQVVVLDDRDMGRETASEGRFGYASRHLLIGVEGGARRAQVQIRTVLQHAWAEFEHDIRYKGTIPDEHASEFDRRFTLAAGLLELADREFSIIRERLQPSFEGAALDADDGDPRIPPRELAAFLAGQYADAGWSRTDHYVWIAAIVLELGITSLAALGDVLRSVDADLLQERMGYRYPPGAVRRLDDALLWVYGDTYVELRANSDRVPALRSRLARMRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5X4</accession>
    <name>A0A0Q8V5X4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15540</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893501.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50032">
        <property type="protein sequence ID" value="KRC50032"/>
        <property type="gene ID" value="ASE19_15540"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="145"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="179" mass="19335" checksum="4FE4413C28D013D6" modified="2016-01-20" version="1">MEPSELSELLAGGGWRLLDPRPVAAEHPDTFELPRAADLDGIVPGSVVRAMFELVDIADVARDGRAPYDDAGRPVLVTHVERMWAVVTGRDGDAVTCLLDSQPYASHTSLELFDPLRLPVSHLIAVDPPRPELAEHLAFVRQMAAEDTRPAGSATPVAPTAPPRVRGDQQSRSPRAARI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5Z6</accession>
    <name>A0A0Q8V5Z6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">AMP-dependent synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_09105</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894528.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52591">
        <property type="protein sequence ID" value="KRC52591"/>
        <property type="gene ID" value="ASE19_09105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="326708at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="2">
        <location>
            <begin position="56"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="3">
        <location>
            <begin position="465"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="551"/>
            <end position="574"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="574" mass="62221" checksum="28BED3024E15EE13" modified="2016-01-20" version="1">MSITTSVSTELRATRDRLLVLRTDLPAAVEEFRWPDVGPTFNFVHDWFDAFARDSDRPGLVIVEEDGARASYTFGELVTRSEQVANHLAAQGVRAGDSVVVMLGNQVELWESMLALIRLGAVIMPTTTAVGPAELVDRLARGDARAVVVNAADAVKFDEVPGDYLRVAVGEAPAGWIRYAAAFETPAAPVPHPGNASDDRLLLYFTSGTTSRPKLVEHTHTSYPVGHLSTMYWLGLQPGDVHLNISSPGWAKHAWSNFFAPWLAEATVFVYNYARFDASALLGQIRTEGVTTFCAPPTVWRMLINADLSGGKGALREAIAAGEPLNPEVISQVERHWGLTIRDGFGQTEMTAAIANPPGRPVKSGSMGRPLPGVPVVLVDPLEGTVVDGVGEGEICLDLAVRDGAGPLTLMTGYQGDPDKNAEAMAGGFYHTGDVASRDEDGCITYIGRTDDVFKASDYKVSPFELESVLIEHPAVAEAAVVPAPDAVRLAVPKAYVALVDGYAPTAETAESILRHAREHLAPYLRVRRLEFFELPKTISGKIRRVELRRRETEVEGNRPTGEYRDEDFPALKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V662</accession>
    <name>A0A0Q8V662_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10870</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894833.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52901">
        <property type="protein sequence ID" value="KRC52901"/>
        <property type="gene ID" value="ASE19_10870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2216011at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="110" mass="11622" checksum="E28A53E6D6499BDA" modified="2016-01-20" version="1">MTDRGSFYVKSQTLRAAATMWSTAASDMASAHTEILPGVGHGNDFGVLAGSSGVATSYDNWSNDMLAAVDKAKGNFTYLDAALTSTANDYDGVDSTVKTEFAVLDRMIEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6B4</accession>
    <name>A0A0Q8V6B4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fatty acid desaturase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10715</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894806.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52874">
        <property type="protein sequence ID" value="KRC52874"/>
        <property type="gene ID" value="ASE19_10715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1032884at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005804">
        <property type="entry name" value="FA_desaturase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012171">
        <property type="entry name" value="Fatty_acid_desaturase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19353">
        <property type="entry name" value="PTHR19353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00487">
        <property type="entry name" value="FA_desaturase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FA_desaturase" evidence="1">
        <location>
            <begin position="72"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="413" mass="46763" checksum="2F79236B865DC2C4" modified="2016-01-20" version="1">MTTITQKPSNPIAHLSPEQIEALGAELDAIRQEVLDSRGERDAAYIRKVVDVQRKLELGSRAVLLASIFPPAWVVGTVGLSVAKILENMEIGHNVMHGQWDWMRDPKIHSTTWEWDNATPSDAWKHSHNQVHHAHTNIVGKDNDLGYGIMRVDEEQRWHPFFLAQPMWNFINACFFEYGIAAYDLELGRNLRVPKEKRSEAFKANLKGTLTKIRKQATKDYVVNPALAIPTGSFLPALAANFTANLVRNIWSHSVIMCGHFPEGVETFELKAIPANETRGEWYLRQMLGSANFSGSTAMHIMSGNLSHQIEHHLFPDLPSNRYAEVAPKVRAVFEKYELTYLTRPFVPQVASAWHKVVRLSFPNGWLATTNAKNLPSQLKLLYAMTTADKRKRRVMQRLLDSAARKQELAQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6N5</accession>
    <name>A0A0Q8V6N5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MerR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11640</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894968.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53038">
        <property type="protein sequence ID" value="KRC53038"/>
        <property type="gene ID" value="ASE19_11640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1748559at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="126" mass="14083" checksum="74A65C28D6E0B06A" modified="2016-01-20" version="1">MLIKDLAERAGVSVKAVRYYESRGLITPERAANGYREYDDGDVLVVREIRALLSLGLTADETVPFVECLRAGNDRADVCPASLDAYRLRIAEIDRRIEELSKLRGELSGLLDDAESYPTTTHQEKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6P9</accession>
    <name>A0A0Q8V6P9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH araC/xylS-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17585</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893147.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48743">
        <property type="protein sequence ID" value="KRC48743"/>
        <property type="gene ID" value="ASE19_17585"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035418">
        <property type="entry name" value="AraC-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14525">
        <property type="entry name" value="AraC_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="226"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="334" mass="36923" checksum="0132BEAD926BB9E2" modified="2016-01-20" version="1">MDRTWSTDTYPVEQQLAYWADVVCQAFTPLAPTRGREHIDRSRTPIGLEGWVRSTRLGETNAAEIASCTQLLRHGPREVRQSPSEEVFVNLQLAGSCKGEQGDRRLLIGPGQIGIYDTTAPYTLEFEEAGDGQAWRVLSFRVPRTKVAGIMPADSRIGGRGIDREHGASRVAIDMMLSIWESRGHLTPAAQLALDDSFAQVLATALGAFDGATIEDRAARDAALRTAATRYARSRIRSGRVLAEDAAGHVGISVRKLHQLFSNDGASFGSVVRQLRLEQVARELRVQPSVNVADLAHAWGFSDSSHMIRLFRERYGCTPTEYRSRTEWTARTTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V711</accession>
    <name>A0A0Q8V711_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894962.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53032">
        <property type="protein sequence ID" value="KRC53032"/>
        <property type="gene ID" value="ASE19_11610"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="21"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="451" mass="48481" checksum="50A009C469A21709" modified="2016-01-20" version="1">MDLHLAELSRTIDPAALGRRLRTARVAAGMTQAQVAAEDITPAYLSRIEDGQRRPEAGLLERMVTRMGVTLEDVLLEVTRDEQMELQLAVDHAELALVSGNPQGALAAIDDVLANPATEKVPHLLKAARQIRAGALEGVGDLDGAIILLEDLTASPTPDATWLKSLIALCRCYRDAGDFTRAVAVGDRAASIIRDLEIDGLTEAIQLTVTVAGAHLLRGDPTVAMRTCRRAIEVAEQYNSIMGKASAYWNASAIEASRGQTEAALGLARKALAMFELSDDGRNLAKLRTELANLHLMQDPPDPIAALEILNNLEQELAWSGGSAWDIAFMHLLTARAQFILGDIDASRISLAKLEQSKPEKAPLLEAQWTVLHGRIAFEAGDQDEARRRFREGVHLLTGAGTDRGAAQLWFELAELLTQVGDTDGAVQAFRSAGASTGLRPLANTTTASSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V779</accession>
    <name>A0A0Q8V779_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895691.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53228">
        <property type="protein sequence ID" value="KRC53228"/>
        <property type="gene ID" value="ASE19_12765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1933019at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359763" evidence="1">
        <location>
            <begin position="32"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="17130" checksum="8A4C8737EBC4C5ED" modified="2016-01-20" version="1">MRSLVRFSWQTAAVGLVVVVLLLVAGERALAWRDAGDRADDQEAAAAAASAEVEGLIDISGSTSDAAMKKLLAGATAEFRTELESQAARLQKALASNKVDARGEAVSTGVTKLSGDKATVIVAATGTVRNKSTKQAEPRNYRLKVDLLRTDGTWLVSGLEFVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V791</accession>
    <name>A0A0Q8V791_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Serine hydroxymethyltransferase</fullName>
            <shortName evidence="7">SHMT</shortName>
            <shortName evidence="7">Serine methylase</shortName>
            <ecNumber evidence="7">2.1.2.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">glyA</name>
        <name evidence="10" type="ORF">ASE19_18890</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + glycine + H2O = (6S)-5,6,7,8-tetrahydrofolate + L-serine</text>
            <dbReference type="Rhea" id="RHEA:15481"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="EC" id="2.1.2.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7 8">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; glycine biosynthesis; glycine from L-serine: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the SHMT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.1" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893369.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48967">
        <property type="protein sequence ID" value="KRC48967"/>
        <property type="gene ID" value="ASE19_18890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="861782at2"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="UniPathway" id="UPA00288">
        <property type="reaction ID" value="UER01023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004372">
        <property type="term" value="F:glycine hydroxymethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019264">
        <property type="term" value="P:glycine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00378">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00051">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001085">
        <property type="entry name" value="Ser_HO-MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019798">
        <property type="entry name" value="Ser_HO-MeTrfase_PLP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039429">
        <property type="entry name" value="SHMT-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11680">
        <property type="entry name" value="PTHR11680"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00464">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000412">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00096">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4 7" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="6 7 8" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SHMT" evidence="9">
        <location>
            <begin position="23"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="SHMT" evidence="9">
        <location>
            <begin position="159"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="170"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="284"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="408"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="7 8">
        <location>
            <position position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000412-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC48967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="483" mass="51859" checksum="4DF8CE75D7BCB3FF" modified="2016-01-20" version="1">MSDNSLNGELVSSAYRQALEVISSVEPRIADATRQELADQRASLKLIASENYASPAVLLTMGTWFSDKYAEGTVGHRFYAGCQNVDTVESLAAEHARELFGAEYAYVQPHSGIDANLTAYWAILAHRVEGPWLQDAGVKNMNDLSDADWEKLRHELGNQRLLGMSLDTGGHLTHGFRPNISGKMFHQQQYGTDPETGLIDYDALRAKAKEFKPLILVAGYSAYPRRVNFAKMREIADEVGATLMVDMAHFAGLVAGKVFTGDEDPIPHAHVVTSTSHKSLRGPRGGFILATEEYAPSVDRGCPMVLGGPLSHVMAAKAVAFAEARTPEFRTYAQTVADNAKALAEGLMKRGTKLVTDGTDNHIVLLDVSSFGLTGRQAESALLDAGVVTNRNSVPSDPNGAWYTSGIRIGTPALTSRGFGADEFDQVADLIVHVLQNTEAGTTSAGAPSKASYVLGEGVADKVRGASAELLDKHPLYPGLDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7L9</accession>
    <name>A0A0Q8V7L9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18455</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893841.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49111">
        <property type="protein sequence ID" value="KRC49111"/>
        <property type="gene ID" value="ASE19_18455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1752728at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="10"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="33230" checksum="A67135B1673BDB10" modified="2016-01-20" version="1">MKALVATQYGGPELLSIEDVPIPRPGPGQLLVRVAASTINATDLQVITGVYRDVLELEFPYVLGNDFAGTVTEVGRDVTGFVVGDEVFGQAMPRPLRVVAAADRPSISTGAMAEYVVIEADTPLVAHRPSSVSVQQAAALGIAGFTARAILATTQVQPGESVLVIGATGGVGTSLVPLLATAGAHITATAGTPADGEVLRGLGAHEVIGFSATEYPDDVDVVVNLVFPGDRLAPVARAIRPGGRLTTIIFPAPSPDDLGRDDVVLQYVSDLECRLGDMADVARAAAAGALTATVGRTLRLSDGVEAAVSFSRQEVVGKIVVTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V882</accession>
    <name>A0A0Q8V882_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13515</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895826.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53364">
        <property type="protein sequence ID" value="KRC53364"/>
        <property type="gene ID" value="ASE19_13515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2214029at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="160"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="180"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="306" mass="34090" checksum="22A8B49BA3A63014" modified="2016-01-20" version="1">MRDRFSDPRIATLAAEGKLMDDNMRRTFIETLEVGEVARAAYSVGAHYWLEAVLTDRALLFIKGAVKPKVVRIALPVEVVRPSSLGKKGTRIETPFGVKTLWGSTLDPDTSKLTAEPTFSGDHPDGLSQPGLDFGLIDVGDCVRRTASEDVVTLKIIGPDSARTNDESGGADGTTGRRSWRQRRVARRAAGRKPRKPKRQRARMERVGFPPSSTIWDISHSCVKCGRVLTNPDSQRHRVGTDCIKWYGSQARKIANPAYDAWTSRKARAEVNRAVEQATLDAEYNRQRTSYVEALERWSQVRAGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V898</accession>
    <name>A0A0Q8V898_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fatty acid hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13405</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895805.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53343">
        <property type="protein sequence ID" value="KRC53343"/>
        <property type="gene ID" value="ASE19_13405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2048011at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006694">
        <property type="entry name" value="Fatty_acid_hydroxylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04116">
        <property type="entry name" value="FA_hydroxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="domain" description="Fatty acid hydroxylase" evidence="2">
        <location>
            <begin position="81"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="244" mass="27648" checksum="3B430227D37C7ACC" modified="2016-01-20" version="1">MSPREVHAAQQVAADEARLDGKYVGERSAGRRTNATMAQVVVEFWKHPSPYLLGTVIVGALVGRVLSGPGSWWELAIPVGLVAILPFVEWGIHVGILHWKPRKVAGLTVDPLLSRKHRAHHSNPREIPLVFIPWQVSLYLAPLNVLVWWLVMPTTSSMFTMLLSVYVIMATYEWTHYLLHSDYRPKSAAYRKIWRNHRLHHYKSEHYWFTVTSAGTADRLLGTAPDPSTVPTSPTVQRLHDLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8F9</accession>
    <name>A0A0Q8V8F9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Hemerythrin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16630</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893695.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50226">
        <property type="protein sequence ID" value="KRC50226"/>
        <property type="gene ID" value="ASE19_16630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1701106at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012312">
        <property type="entry name" value="Hemerythrin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01814">
        <property type="entry name" value="Hemerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hemerythrin" evidence="1">
        <location>
            <begin position="14"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="222" mass="24959" checksum="B21804107219FEF7" modified="2016-01-20" version="1">MNPTTSALQQRPNVHEMVVVHRVFRRELTALPRLVRRVAEGDAARAGLVAEHLALILDGLHMHHTGEDAVLWPLLHVRAAPSSDLVETMQRQHEVVDGRTEEVRTLATAWAKAPTALGGEQVAQLVEGLATALFEHLDLEEREILPLVARHITVEEWQSLGEHGREAMSFRQLPLMFGAILEDADADERDQMLAQLPAPVRLVLRTIGARQYRRYINRVRVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8N7</accession>
    <name>A0A0Q8V8N7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14450</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896972.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53531">
        <property type="protein sequence ID" value="KRC53531"/>
        <property type="gene ID" value="ASE19_14450"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="62" mass="6929" checksum="FAF47E3044964E8D" modified="2016-01-20" version="1">MNEKPMDEGISSGRIVAEDDVEGHMPFRRSLEVEEDVEGHQRSGLTDDGHDDVEGHGIRIKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8Z1</accession>
    <name>A0A0Q8V8Z1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NADH-quinone oxidoreductase subunit J</fullName>
            <ecNumber evidence="1">7.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10015</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the complex I subunit 6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53611">
        <property type="protein sequence ID" value="KRC53611"/>
        <property type="gene ID" value="ASE19_10015"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001457">
        <property type="entry name" value="NADH_UbQ/plastoQ_OxRdtase_su6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042106">
        <property type="entry name" value="Nuo/plastoQ_OxRdtase_6_NuoJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00499">
        <property type="entry name" value="Oxidored_q3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0520">NAD</keyword>
    <keyword evidence="1" id="KW-0874">Quinone</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0830">Ubiquinone</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="14"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="239"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="272" mass="28060" checksum="5C94CC1B67A29BF4" modified="2016-01-20" version="1">MVLAALGILFVRKAVHAALLLAVVMISLAVLYAVLEAPFLFAVQIIVYTGAILMLFLFVLMLVGVDASDSVVETIKGQRALAWGTGLAFAVIMVVGLTQLTFGSAVGLDEANKGGNVQALANLLFSRYVFIFEATSALLITAAVGAMVLAHRERLTPRRTQAMIAADRVRAYAETGAHLGPLPPPGVYARHNAVDTPALLPDGSPAPASVSRVLAARGTMQSAGLTDIEAIKDQLGVDPVSAPATAGRGDATGSSEENAAPIGSAAQEATDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V973</accession>
    <name>A0A0Q8V973_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-hydroxy-2-methylbutyryl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06810</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895233.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53802">
        <property type="protein sequence ID" value="KRC53802"/>
        <property type="gene ID" value="ASE19_06810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1260864at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="252" mass="26182" checksum="508D6B516C22D028" modified="2016-01-20" version="1">MKIENTSVLVTGGASGLGLATARILAKSGATVTILDLPTSDGQAVADQLGGHFVGGDVRDEHSVNEALDAAEKAGTIRAVVHCAGSGHTLRILDKQGNPAPLEHYTKVININLVGSFNVLRLAAARLARTESVDGERGVIIMTASVAAFEGQIGQIPYASSKAGVVGMTLVAARDLAGKEIRVCTIAPGIFETPLLGRLSQEVRDSLGASVPHPKRLGTPDEYASLAAHIIDNPMLNGETIRLDGAIRMAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9G4</accession>
    <name>A0A0Q8V9G4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07860</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895413.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53982">
        <property type="protein sequence ID" value="KRC53982"/>
        <property type="gene ID" value="ASE19_07860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="782"/>
            <end position="847"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="852" mass="90322" checksum="9AB66AE88BB8B3FF" modified="2016-01-20" version="1">MSGPVLLARPRLHAVLDRDEPRLVVLSAPSGSGKTSLVRCWVAPRDPATVLWVTLETDHVARSNFWQAVLTSAGRHGILTPEAAAGLVGDVERSDDLAALVAGALEGRGPLVLVVDAHERLRDDTGAVDADLTRLVRLLPDLEVVVTTRTTTGIASPGRTLRGEVELLTATDLAFSVEETRELLARFGTPGAADHAERLHAATDGFPLAVRAGMLALARSGPDHDGIDWQSLVAEDLRVQLAEGSAYDFVLATCLPPYFDTDLAIELTGTSDVKEILADLEWNGFGRWIPFAPGRQVFQYVESLRAAVLVDAAGLPAAKQARTAQLVATWLHRNGNYEAAFEIAVGARQYSVAGRVYAALVASNPETITTGRFDRQLATVPRSALTQYPALALGRGLACHRNPALLGAAAEYFRIPAAWTGPRLPEMPPGEVVMGHTAKVASLRVLGRFDESARAAQQALAYFDTIPAGEQHHVADLGATLLRHLSYSLFQDAQVDAARGAAMRAITMSTRPESLNHTAVYAAGFNALDGRNTEARAALAHVDPGAWRPGQTTTYGNALGRIGQAALYLDEFELAASIAEYDGCPFAVASEFWPFVTWTLMHARLGLGRATTEAHRVEAALSRTPAPPGTADSLGSAAVRSALAILWLAAGNRTKAGPLLRLRTRYTGQLAPAVLLGRLLAGKASEALAALPQLETRPGHTTRSTAAALTLGAAAALRTDRPDTAAALLDRVLALVGPQGARAHLMYLPAADLAALRGLADDQGDDMLRGYLAGPVPECVTGGTLAAPLTPQEQAVIAAFAQNATRAGVAAALHVTENTVKTHLQRIYRKLGVNSREAVIEKAIELDLLAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9I9</accession>
    <name>A0A0Q8V9I9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54005">
        <property type="protein sequence ID" value="KRC54005"/>
        <property type="gene ID" value="ASE19_07975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1626243at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016051">
        <property type="term" value="P:carbohydrate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018011">
        <property type="entry name" value="Carb_sulfotrans_8-10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005331">
        <property type="entry name" value="Sulfotransferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12137">
        <property type="entry name" value="PTHR12137"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03567">
        <property type="entry name" value="Sulfotransfer_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="285"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="326" mass="37720" checksum="DD7107EA9D604CEF" modified="2016-01-20" version="1">MLTGLQKVSGGVWRTYLAPEAKVVFESLNKNACTSLKWMMADLAGEDLDGFRARDMPYIDDSEPIHKRELWKVSPRLDALSEDERAQIHPDNGWFVFAVVRDPRLRLFSAWQNKLLIENPFSVRWSREWWYPRHPLTAETVIEDFAKFVDLMGEDEIHWLREKDAHFRDQVEMLAEDAVPYTRIYEISEIKQLQADLNDHLAAIGRPPVKLPRANPTPLRAIGALFENGVREKIETIYAADFERFGHLWDFSKTEAAEPWSSAALVACEQEAVLGRRIGELFRIARDRGEELEAARAELADARRRVAQLERRSVRAQLGRIKRRVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9N8</accession>
    <name>A0A0Q8V9N8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07755</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895393.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53962">
        <property type="protein sequence ID" value="KRC53962"/>
        <property type="gene ID" value="ASE19_07755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2082122at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021426">
        <property type="entry name" value="DUF3073"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11273">
        <property type="entry name" value="DUF3073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="61" mass="7006" checksum="71115D2639F35277" modified="2016-01-20" version="1">MGRGRAKAKQTKVARDLKYRNHDTDLGALARELHGDPGKREDDVDPEVLDKWSDYVDPQRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9R5</accession>
    <name>A0A0Q8V9R5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07450</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53910">
        <property type="protein sequence ID" value="KRC53910"/>
        <property type="gene ID" value="ASE19_07450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1948290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008884">
        <property type="entry name" value="TylF_MeTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40036">
        <property type="entry name" value="PTHR40036"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05711">
        <property type="entry name" value="TylF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="239" mass="27540" checksum="685A6BF6B3138757" modified="2016-01-20" version="1">MMPPAAVQRALARARLSSKVAIAKAGRDSRRLDTIVNLPKIETWRREHVPAGTPAFTDRELMYDHLHAELIGDKAIDYLEFGVFEGRSVRHWADLNTNRDSRFFGFDSFEGLPEEWKRFDRSIAAAHFDLQGVVPEIDDERVSFVAGWFQESVDPFLETFTPRHQMVVHIDADLYSSALYVLTRFNALLTPGTIVIFDEFSSALNEFRALEDYCSAYMREYDVLAHAWHYFGQVAIQMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9R9</accession>
    <name>A0A0Q8V9R9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15080</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51408">
        <property type="protein sequence ID" value="KRC51408"/>
        <property type="gene ID" value="ASE19_15080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018714">
        <property type="entry name" value="DUF2237"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37466">
        <property type="entry name" value="PTHR37466"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09996">
        <property type="entry name" value="DUF2237"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="131" mass="14061" checksum="6A5096CD132F8D5C" modified="2016-01-20" version="1">MDERNVVGSALEPCGTDPVTGFLRDGNCSCGPEDVGLHAVCAVMTEEFLAHQRSVGNDLSTPRPEWRFPGLHPGDRWCVVAARWLQAYAEGAAAPVVLASTNERALELIPIELLREHSVDVPDDPGALSAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAK8</accession>
    <name>A0A0Q8VAK8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10890</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894837.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52905">
        <property type="protein sequence ID" value="KRC52905"/>
        <property type="gene ID" value="ASE19_10890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1255554at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359853" evidence="1">
        <location>
            <begin position="29"/>
            <end position="515"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="515" mass="54329" checksum="6F8724BF1D7E0FDE" modified="2016-01-20" version="1">MRPRSLAAAAAVGILALALGSPAAPVHADDGFALPGLPALPALPTIPGLPIPPLPTDLLVPRFTGAPVTAQPLEAPPVPQNPWLAPNGRSSMHNDAYSSDAYTVAGPTGRALTMRTASYGIRECATMGFDSHDRIVGLCGGLEGFTMMVIDPVTLRAISQLQVSARDFSKAANPFTDLCGGTYFFLDAEDHAFATTTDSSIAEVVVGVDGRLTKGRRWPLASYLGADDCLVATGVDWSGRVWWFSQDGTVGTLDRATGVVRKLELPEGEGIFNSVSTDETGGVYFVSTHQAYRLDAAADGTPEITWAIPYDRGTTVKPGMLSQGSGTSPTLIGERWIGIADNAEPQSHVIVYDRRRGVPAGEREHCSVPVLQSGASTTENSLVAAGNSLIIENNYGYAGITSTLLGRSTTPGVSRVMIDDDGCHVAWTNSTVAPTSVPKASLGNGLVYVYSKPPRKDLLDAWYVTAIDIRTGETAWSRLTGTGIQWNNHYAAIYLGPDGALYVATIVGLIRLADG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAX1</accession>
    <name>A0A0Q8VAX1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11535</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894947.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53017">
        <property type="protein sequence ID" value="KRC53017"/>
        <property type="gene ID" value="ASE19_11535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1949591at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046036">
        <property type="entry name" value="DUF5994"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19457">
        <property type="entry name" value="DUF5994"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="187" mass="20651" checksum="3DFA5E75B3558CD1" modified="2016-01-20" version="1">MTTSTTTVTRQPAQRAPLRLAAHHGSRLHPLDGAWWPQSRDLQVECADLVDHFPDGIGRIARLLFSPPDWDLPWSADGTGTYPRKVSVGRGPVKVGWFPHDDTHVMVLVLSTGERLHVLVVPSATDQRAALALMERAADERNTQDATALLALITTPAHPWTERDQRGLLLDYSVWDDEGGSIPRSAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBU0</accession>
    <name>A0A0Q8VBU0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04485</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894340.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54741">
        <property type="protein sequence ID" value="KRC54741"/>
        <property type="gene ID" value="ASE19_04485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755145at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="19792" checksum="2CBA9BC9415D7D28" modified="2016-01-20" version="1">MDYELDVDPALAAAVLELEGHHSRAGWDQPARLYALVDTAELVAQEPALAAQLGLDQPIERGSLTPVEQEELPHGRQLEEVLPDIVWPVEVAGCAAVVERLVLPPAADGQVPEDPAAALEFAREHPDAEEVRIVAGVTRHGAAYCALRMRSQDEDMAVMGGPDLVPGLIELLRGTLDDAEDNDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC04</accession>
    <name>A0A0Q8VC04_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">GDSL family lipase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_04820</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54798">
        <property type="protein sequence ID" value="KRC54798"/>
        <property type="gene ID" value="ASE19_04820"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359890" evidence="3">
        <location>
            <begin position="27"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="26"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="domain" description="SGNH_hydro" evidence="4">
        <location>
            <begin position="84"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="333"/>
            <end position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="353" mass="37133" checksum="3D84692AB506C48C" modified="2016-01-20" version="1">MRTPYRWIRRVAAVSKASAARKLASAALYGGGGLSALGAGLYGVLTAEARLARKTIGPAREEPPPDATGWYGRGRPGPAIRIALLGDSSAAGYGAERVEETPGALIASAIAEHADRRVYLREFCVVGAKSSDLASQVERALPIEPEAVVILIGGNDVTHTMRPSQSVRYLSEGVRRLMGSGAKVVVGTCPDLGTIQPIAPPLRQVARSWSRRLAAAQTIAVIEEGGRTVSLGDVLGPEFAAAPALLFGPDQFHPSAEGYRRLADVLIPSVLAALEQAPAEEVGLEAFRGEGVLPVTRAAVQAVKEPGTELDGTEIAGRRAGVRGLWVELRHRRSRQHVPGEAPAEHESVPAAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC43</accession>
    <name>A0A0Q8VC43_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">Ferredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_04795</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>[3Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:21137"/>
        </cofactor>
        <text evidence="7">Binds 1 [3Fe-4S] cluster.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894287.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54794">
        <property type="protein sequence ID" value="KRC54794"/>
        <property type="gene ID" value="ASE19_04795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1873445at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051538">
        <property type="term" value="F:3 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000813">
        <property type="entry name" value="7Fe_ferredoxin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00354">
        <property type="entry name" value="7FE8SFRDOXIN"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0003">3Fe-4S</keyword>
    <keyword evidence="7" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5 7" id="KW-0408">Iron</keyword>
    <keyword evidence="6 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="8">
        <location>
            <begin position="31"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="108" mass="12136" checksum="EFBAA93556151AC6" modified="2016-01-20" version="1">MTYIISQPCVDVKDRACVDECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAIFYEDDVPEEWKDYYDANVKFFDDLGSPGGAAKMGEIDKDAEFVAALDPQNQDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCM1</accession>
    <name>A0A0Q8VCM1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05100</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894238.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54843">
        <property type="protein sequence ID" value="KRC54843"/>
        <property type="gene ID" value="ASE19_05100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2032687at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045596">
        <property type="entry name" value="DUF6459"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20060">
        <property type="entry name" value="DUF6459"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="169" mass="18560" checksum="C585F977BCA05112" modified="2016-01-20" version="1">MSAATTEYVGVRLAVPVAPTQGTLALALLPRQGPPAAPPRTTRPGAAVVPIDRRLRRTIEEWAYRFTQAAVEIVGGDRPVSQLVRWTTPEVYADLRLRAHLVARAGGHQPGLARVQAVRPRVQSVHSCFVTDDIVECGVHVRHGERSRAVAVRFERSGQRWICTALDFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD00</accession>
    <name>A0A0Q8VD00_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05860</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894104.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54971">
        <property type="protein sequence ID" value="KRC54971"/>
        <property type="gene ID" value="ASE19_05860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="302683at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011045">
        <property type="entry name" value="N2O_reductase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50974">
        <property type="entry name" value="SSF50974"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359918" evidence="1">
        <location>
            <begin position="34"/>
            <end position="489"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="489" mass="53098" checksum="10198641FB0BC01C" modified="2016-01-20" version="1">MRTSSRAPLRLSLAIATLGAAALPLLVPDAAPAQVPAARSGATATTGAAGTTLAGGVPAAPTTLPRRAPGLRDVMWVGNNWAGTASIVDAHDFTVLKRGVDLVPDKAQELADIRKDLVAQAYFLLIRYGPGEGHDQFVDDMFTTQDGRYLAVSRPSFADVVWIDITKATAGAPDSIVREQSMDGHRSDHMALSPDGRRLLVSDSTARQVIEYSMVDETLTDGTVVRMGDRTRTFPSGETPHESNYTHDGEQIFHASIGLVYTPGDLPVLDALKGDRWFQVVKNSDFSILRRWGIGRELAEAGYPSMSSAVRPMAVSPDERYVYFQVSFLHGFVEFDTQAPDLNNKVDYTLGGVPEPRVGAVTRLVRLPNRVPTMLRELYVNDSAHHGLSINEDGDTLCVAGTMDDYAALVDRASGDYTLFDEATTGHGYLKPYWTTEGLDDTCWISLSGSDAVAVLDTDTGKELAYRSVGDHPQRVRHGYVPETLVATW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD66</accession>
    <name>A0A0Q8VD66_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA-specific adenosine deaminase</fullName>
            <ecNumber evidence="1">3.5.4.33</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">tadA</name>
        <name evidence="3" type="ORF">ASE19_11365</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>adenosine(34) in tRNA + H(+) + H2O = inosine(34) in tRNA + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:43168"/>
            <dbReference type="Rhea" id="RHEA-COMP:10373"/>
            <dbReference type="Rhea" id="RHEA-COMP:10374"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:82852"/>
            <dbReference type="EC" id="3.5.4.33"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytidine and deoxycytidylate deaminase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.33" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895190.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53635">
        <property type="protein sequence ID" value="KRC53635"/>
        <property type="gene ID" value="ASE19_11365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1890883at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052717">
        <property type="term" value="F:tRNA-specific adenosine-34 deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002100">
        <property type="term" value="P:tRNA wobble adenosine to inosine editing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00972">
        <property type="entry name" value="tRNA_aden_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028883">
        <property type="entry name" value="tRNA_aden_deaminase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14437">
        <property type="entry name" value="MafB19-deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="144" mass="15624" checksum="C12222CE0A067DF5" modified="2016-01-20" version="1">MREALEHAREAGRLGDVPIGAVVLDEEFRVIATGRNVREQDGDPVGHAEVVALRAAAHVRGEWRLTGCTLVVTLEPCTMCAGAAVQSRVDRVVFGAYDEKAGAVGSLWDVVRDRRLNHRPEVLAGVLADDSVALLDAFFATHRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDD5</accession>
    <name>A0A0Q8VDD5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carbon monoxide dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06660</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894510.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55108">
        <property type="protein sequence ID" value="KRC55108"/>
        <property type="gene ID" value="ASE19_06660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1719670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010419">
        <property type="entry name" value="CO_DH_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38588">
        <property type="entry name" value="PTHR38588"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06240">
        <property type="entry name" value="COXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="154"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="238" mass="24639" checksum="5B7B5C746189661C" modified="2016-01-20" version="1">MDLTHSFTVPTSVEATWAHFQDIGALAECFPGAQVTAVGEDADGRPTFEGTCKVKLGPIALVYAGAGSFTESDEAAHRFVVDAKGRDKRGNGTAGAKVTVTMAAADAGSTRVEVLTDLAITGKPAQFGRGVMQDVSDKLLGQFVACLEQRLAAEAGPADQSSPPESSVSSAGSDDPAGDDRPPPSRPAPQAPPKQADDALDLGSAVLPVLLKSYGKQVAVAVLALLTLRALLRRKCRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDL4</accession>
    <name>A0A0Q8VDL4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="14 15">Dihydroxy-acid dehydratase</fullName>
            <shortName evidence="15">DAD</shortName>
            <ecNumber evidence="14 15">4.2.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="primary">ilvD</name>
        <name evidence="16" type="ORF">ASE19_05645</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <reference evidence="16 17" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Functions in the biosynthesis of branched-chain amino acids. Catalyzes the dehydration of (2R,3R)-2,3-dihydroxy-3-methylpentanoate (2,3-dihydroxy-3-methylvalerate) into 2-oxo-3-methylpentanoate (2-oxo-3-methylvalerate) and of (2R)-2,3-dihydroxy-3-methylbutanoate (2,3-dihydroxyisovalerate) into 2-oxo-3-methylbutanoate (2-oxoisovalerate), the penultimate precursor to L-isoleucine and L-valine, respectively.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>(2R)-2,3-dihydroxy-3-methylbutanoate = 3-methyl-2-oxobutanoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:24809"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:49072"/>
            <dbReference type="EC" id="4.2.1.9"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="11">
            <dbReference type="Rhea" id="RHEA:24810"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>(2R,3R)-2,3-dihydroxy-3-methylpentanoate = (S)-3-methyl-2-oxopentanoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:27694"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:35146"/>
            <dbReference type="ChEBI" id="CHEBI:49258"/>
            <dbReference type="EC" id="4.2.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="15">Binds 1 [2Fe-2S] cluster per subunit. This cluster acts as a Lewis acid cofactor.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 15">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="13 15">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 3/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="12 15">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 15">Belongs to the IlvD/Edd family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.9" evidence="14 15"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55147">
        <property type="protein sequence ID" value="KRC55147"/>
        <property type="gene ID" value="ASE19_05645"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00057"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00061"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004160">
        <property type="term" value="F:dihydroxy-acid dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00012">
        <property type="entry name" value="IlvD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042096">
        <property type="entry name" value="Dihydro-acid_dehy_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004404">
        <property type="entry name" value="DihydroxyA_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000581">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020558">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037237">
        <property type="entry name" value="IlvD/EDD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00920">
        <property type="entry name" value="ILVD_EDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143975">
        <property type="entry name" value="SSF143975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00110">
        <property type="entry name" value="ilvD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00886">
        <property type="entry name" value="ILVD_EDD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00887">
        <property type="entry name" value="ILVD_EDD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 15" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3 15" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10 15" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="7 15" id="KW-0408">Iron</keyword>
    <keyword evidence="8 15" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9 15 16" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="15">
        <location>
            <position position="506"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="15">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="480"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="15">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00029436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00029490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KRC55147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="601" mass="63512" checksum="FDEF7D4034847394" modified="2016-01-20" version="1">MAGARALWRATGMTDSDFGKPIIAIANSFTEFVPGHVHLRDLGKIVAESVVASGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADAVEYMVQAHCADAIVCISNCDKITPGMLLAALRLNIPVVFVSGGPMEAGKTTAIEGIVHSKLDLVDAMVASANEAVSDEQLDTIERSACPTCGSCSGMFTANSMNCLTEAIGLSLPGNGSTLATHAKRRALFEEAGRVVMDLCRAYYDNDDESVLPRNIANRDAFENAVALDVAMGGSTNTVLHLLAAAREAELDFDVHDIDAISRRVPCLAKVAPNSPKFHMEDVHRAGGIPALLGELRRGGALKEGVRSVHSPNLDEWLGAWDIRGESPSAEALELFQAAPGGVRTTEPFSTENRWGTLDTDAAEGCIRDFEHAYSADGGLAILTGNIAADGCVVKSAGVPDDALVFHGTAIVFESQDAAVEGILGKKVEEGHVVVIRYEGPKGGPGMQEMLYPTAFLKGRGLGQKCALITDGRFSGGTSGLSIGHISPEAAGGGVIALVEDGDPISIDIPNRTIHLDVDEHTLFERRLLQEKRDKPYTPLDRQRPVSAALRAYASMATAASDGAYRRVPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VER8</accession>
    <name>A0A0Q8VER8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">RecBCD enzyme subunit RecD</fullName>
            <ecNumber evidence="10">3.1.11.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Exonuclease V subunit RecD</fullName>
            <shortName evidence="10">ExoV subunit RecD</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Helicase/nuclease RecBCD subunit RecD</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">recD</name>
        <name evidence="12" type="ORF">ASE19_11660</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>Exonucleolytic cleavage (in the presence of ATP) in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides.</text>
            <dbReference type="EC" id="3.1.11.5"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="10">Heterotrimer of RecB, RecC and RecD. All subunits contribute to DNA-binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the RecD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.5" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894971.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53041">
        <property type="protein sequence ID" value="KRC53041"/>
        <property type="gene ID" value="ASE19_11660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="961809at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009338">
        <property type="term" value="C:exodeoxyribonuclease V complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008854">
        <property type="term" value="F:exodeoxyribonuclease V activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01487">
        <property type="entry name" value="RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006344">
        <property type="entry name" value="RecD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041851">
        <property type="entry name" value="RecD_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027785">
        <property type="entry name" value="UvrD-like_helicase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13538">
        <property type="entry name" value="UvrD_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01447">
        <property type="entry name" value="recD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 10" id="KW-0227">DNA damage</keyword>
    <keyword evidence="9 10" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8 10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 10" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="5 10" id="KW-0347">Helicase</keyword>
    <keyword evidence="4 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 10" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="11">
        <location>
            <begin position="178"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="186"/>
            <end position="193"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC53041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="596" mass="63222" checksum="8F0D3AFD28F31632" modified="2016-01-20" version="1">MTDLFEATSPHDPRVARGASGLLATFNAAGLVDAADVRVAERVADLGGETDDRVRLAVALAVRSVRGGSVGLDLDALPDLADLGIDASWPALEEWSAALAASPLLREGVVHHELGLVYLDRYHRLERQVADDLGGRISHRGHLGPPPVDEAVLAATLERVSGEHLSREQAAAVEHAARHRTTVLTGGPGTGKTTTVARIVLALADQFAPLHDRRMSIALAAPTGKAATRLQEAVARELAELDALGDGAGQIAIPESMTLHRLLGWRPDNSTRFRHDRSNRLKHDLIVVDEASMVDLTMMARLLEAVRPETRLVLVGDPRQLTSVGAGAVLSDLVAGFAGHPDSPVVALTENHRSTEEIKALAAALRDDGPDAADRVLEVLRAGTDEVDYVETDNPVEALRGPVTGAALAVRNAAVDAGPPEALAALERFRLLCAHREGPYGVRAWNRHAEQWLAAELGAPLGSAWYAGRPLLVTTNDYALDVYNGETGVVVPDAAGRARAWIAGAGAPRPFAPGRLGAIETMHAMTIHKSQGSQAERIAVLLPDADSRLLTRELFYTAVTRAEEHVTVVGSAAAVRAAVETTAQRATGLRQRLAPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEU5</accession>
    <name>A0A0Q8VEU5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08450</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54083">
        <property type="protein sequence ID" value="KRC54083"/>
        <property type="gene ID" value="ASE19_08450"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012507">
        <property type="entry name" value="YibE_F"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41771">
        <property type="entry name" value="PTHR41771"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07907">
        <property type="entry name" value="YibE_F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="182"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="206"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="238"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="270"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="338"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="380"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="414" mass="42714" checksum="E9ADA94609DF3AF8" modified="2016-01-20" version="1">MSPMGHGHGHSHRATTGIDDEIRVGRTARTVLLAGLGVVLLATLVGIGVWWPPSDTVEKAAENGGEAAQFAAPGVTFPTGEVVEVGRHCAGDEAPGTDGCGSLAVRVAGEGEPVVVQVTPDVLDSGIVKGDKVELLRRPPEADAVIQEPSYAYFATERNGTLVWLGLSFVVVVLAIARWRGLFALVGLAFGGAVVWWWMLPALLDGAPGVGVALTSASAIMFVVLYTTHGLSLRTSTALAGTIVGIVLTAGIGVIAIGDARLTGISDEGGQILATFGTLDFPALLGCALVIAGLGVLNDVTITQASAVWELRAATPDASRATVFASAMRIGRDHIASTIYTIVFAYVGTALLLLMLLKVYDRPILQLLSTEQLAEEVVRTMVTSIGLVLAVPVTTVLATLVASPRSTGPSTPAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEV9</accession>
    <name>A0A0Q8VEV9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_08555</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54099">
        <property type="protein sequence ID" value="KRC54099"/>
        <property type="gene ID" value="ASE19_08555"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359970" evidence="2">
        <location>
            <begin position="35"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="3">
        <location>
            <begin position="36"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="4">
        <location>
            <begin position="123"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="326"/>
            <end position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="359" mass="37565" checksum="645B9D7E9D43E61E" modified="2016-01-20" version="1">MTSPRTLRLAGIGLVLVIATAVAVTAALYNRAFANPAEVTLETSRAGLVMDPGGKVKLRGVEVGRVGSVERAGDGVRIVLEIDRDKIHDIPADVVGEIRATTVFGAKYVELVPAAKGAAGGVLADGSTIKASGVTTEINTVFDGLDRVLSGVDIASLNGTLTVLAQTLSGRGDDIASVAAEADAYLTRLEPLLPQLRRDLHEVARFARLAVEVSPALLEILRNATVTAGTVNDEQKALARVLVDLSLLGGRAENLLGENGDALATLLASARPTAATLRAYSTELPCFLQGMDVTRQAMAKVIGGTDATLRALVSVRSELSRYTFPNDLPGYPQGRGPDCHGLPRLKPSQVPVPERGTPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF37</accession>
    <name>A0A0Q8VF37_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Carboxylic ester hydrolase</fullName>
            <ecNumber evidence="1">3.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12115</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the type-B carboxylesterase/lipase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.-" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895048.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="ESTHER" id="9actn-a0a0q8vf37">
        <property type="family name" value="Carb_B_Bacteria"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53121">
        <property type="protein sequence ID" value="KRC53121"/>
        <property type="gene ID" value="ASE19_12115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="489066at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002018">
        <property type="entry name" value="CarbesteraseB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019826">
        <property type="entry name" value="Carboxylesterase_B_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00135">
        <property type="entry name" value="COesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00122">
        <property type="entry name" value="CARBOXYLESTERASE_B_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="COesterase" evidence="2">
        <location>
            <begin position="10"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU361235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="478" mass="50621" checksum="5AC432C3EA4024E7" modified="2016-01-20" version="1">MTSSDDTTVQGAVHSWLGISYATADRFHSPKIVPFDPDLPYDQKGLAPLQAGDTSWLEADNGFSEDCLNLNVWAPADAGDKPLPVIVYVFGGGWMLGANTQTTSNASGLAATGRAIGVSINYRLGAFGALSLSQYGGALAQATNLCLQDIITALRWVNENISHFGGDPNNVTVTGHSAGAYSTLSLLGAPSADGLYHHLAAFSGMPARQVPAWGAEERAHAVLTALGIENDPEQLLTVDAHLLAETMAATQSSDPGAAHGVDNDLVAIVDDRTQPNGILTDLPMRVLESGRHKEIDILFSSTTHELDWWVLHKTDEFDPGSIDAFVTEFANRNRIPRSRARKIVAAYDVNGRTPVQVRGALLTDFSFTLPQTRGALAHAAAGGNAHLLSIGPVEGAHAVHGTEMYGIVGQTRPGAGHEQIVRDTFVRDALLSLATSDNGALWRPVATAPTAQGIGDMPYDATAHAEDVLETFSGIKRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF46</accession>
    <name>A0A0Q8VF46_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amino_oxidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08920</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895595.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54163">
        <property type="protein sequence ID" value="KRC54163"/>
        <property type="gene ID" value="ASE19_08920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1384915at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="19"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="440" mass="46509" checksum="4C5CAF42F90C370F" modified="2016-01-20" version="1">MNSDTPSFDADVVVIGAGIAGLTAAHRIAGTGLAVRVLEAGARSGGRIRTEPIADGYLEHGGIFHTQQYHAFRRLVAELGLADRVSTVPTGFHSRVLTPRGWKHVDYGSLLGPATFGGLSIPDRIRVAVAALPALRRRPRRPEDFGDLVTMLELDDRSSADAVPVDAADYFTAGPHEFLWGTGSSSISYAMLALQLHVFAGELREIDGGVGQVVDSLAAGLDVRHGAEVALVEEEGEGARVSLADGSTIAARAVVVATTADVANKIWPTAPADVASHLAGVDYTRIDYVYLRTREPVELRLGRRALSMEVIPTATRGGRTMGGIYQSNGWVGEGGLLLVTAANAAAGRIPDADLVDQLEADAEELHPELRGQVVERVLVRHEHYTPTFRAGMVRTLAAARAQLGGGAIDLAGDHMAAPWVDGAIRSGELAADRVAARLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG83</accession>
    <name>A0A0Q8VG83_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14375</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896986.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53517">
        <property type="protein sequence ID" value="KRC53517"/>
        <property type="gene ID" value="ASE19_14375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1412344at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="209" mass="21679" checksum="AE4DACCAB0FA81F2" modified="2016-01-20" version="1">MSRAVVLVALGVDAHRHADELGEVAVATGASVAFLQTGTPSVVDELDRLAAAGATRVELVGLGLGAPIARSWLRRVAAHWRRTRSGVEVVVAGREVTGDEAPLTSPAWEDVPGHGHHVLVCRGPRCSARGSAATSAAIDDALRAHGLGDDDVLVAQTGCLYPCNHAPVVVVHPDDTWYGGVDAACARRIVVEHLAGGVPLVGQRLPRDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGD0</accession>
    <name>A0A0Q8VGD0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Pyruvate carboxylase</fullName>
            <ecNumber evidence="7">6.4.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">ASE19_14665</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <reference evidence="16 17" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + hydrogencarbonate + pyruvate = ADP + H(+) + oxaloacetate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:20844"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.4.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7">
            <name>biotin</name>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.4.1.1" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896937.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53565">
        <property type="protein sequence ID" value="KRC53565"/>
        <property type="gene ID" value="ASE19_14665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="361205at2"/>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004736">
        <property type="term" value="F:pyruvate carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006090">
        <property type="term" value="P:pyruvate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001882">
        <property type="entry name" value="Biotin_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003379">
        <property type="entry name" value="Carboxylase_cons_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005930">
        <property type="entry name" value="Pyruv_COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00289">
        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02436">
        <property type="entry name" value="PYC_OADA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001594">
        <property type="entry name" value="Pyruv_carbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00878">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01235">
        <property type="entry name" value="pyruv_carbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50979">
        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00188">
        <property type="entry name" value="BIOTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 7" id="KW-0092">Biotin</keyword>
    <keyword evidence="3 7 16" id="KW-0436">Ligase</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="14">
        <location>
            <begin position="1"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="13">
        <location>
            <begin position="121"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="15">
        <location>
            <begin position="528"/>
            <end position="797"/>
        </location>
    </feature>
    <feature type="domain" description="Lipoyl-binding" evidence="12">
        <location>
            <begin position="1055"/>
            <end position="1132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="933"/>
            <end position="956"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="295"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="238"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="537"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="609"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="10">
        <location>
            <position position="707"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="736"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="738"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="871"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR001594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR001594-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001594-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001594-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KRC53565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1132" mass="120345" checksum="240EF3A1436FC5C8" modified="2016-01-20" version="1">MFKKVLVANRGEIAIRAFRAAYELGAKTVAVFPYEDRGSEHRLKADEAYEIGERGHPVRAYLDPEGIVATAVACGADAIYPGYGFLSENPALAEACAEAGITFVGPDSTILELTGNKARAIAAAKAAGVPVLQSVAPSTDVDALVVAAEAIPAPLFVKAVAGGGGRGMRRVDDRAQLREAIETCMREAEAAFGDPTVFIEQAVVDPRHIEVQILADGTGTEAGTIHLFERDCSVQRRHQKVVEIAPAPNLDPAIRDRMCADAVRFAREIGYRNAGTVEFLLDPAGNYVFIEMNPRIQVEHTVTEEVTDVDLVQSQLRIAAGETLADLGLEQDGIVLRGSALQCRITTEDPANGFRPDTGVITTYRSPGGGGVRIDGGTTYTGAEISAHFDSMLAKLTCRGRTFEKAAEKARRAVAEFRIRGVSTNIPFLQAVLDDPDFVAGGVTTSFIETHPQLLQARGSGDRGSKLLTFLADVTVNKPYGDARASVDPASKLPALDLSVPVPDGTRQRLLAVGPEAFAAELRAHTGVAVTDTTFRDAHQSLLATRVRTIDLLGVADHVARLTPELWSLEAWGGATYDVGLRFLAEDPWERLAALREAVPNICLQMLLRGRNTVGYTPYPTAVTDAFVEEAAATGIDVFRVFDALNDVDQMRPAIEAVRATGTAVAEVALCYTGDLSSPDERLYTLDYYLRLAEQIVDAGAHVLAIKDMAGLLRAPAARTLVTALRERFDLPVHLHTHDTPGGQLATLLAAIDAGVDAVDAACAAMSGTTSQPALSALVATTDHSARTTGLSLDGVNALEPYWEATRRLYAPFESGLPAPTGRVYTHEIPGGQLSNLRQQAIALGVGEKFEQVEDMYAAANRILGNVPKVTPSSKVIGDLALSLVAAGADPAAFEENPGSFDIPDSVIGFLSGELGDPPGGWPEPFRTKALAGRSWTAPEPTLTPEQSAALGSADHESRRRTLNQLLFPAPTRAFDEARQAYGDVSVIPTRDYLYGLTQGEEHEVRLDEGVTLLLGLEAISEPDERGFRTVMCTINGQLRPVSVRDRSVSAEVPAAEKADPARPGHVAAPFQGAVTPIVAVGDRVGAGDTVATIEAMKMEASITAPVDGVVKRLAISGTQPVEGGDLVLELG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH43</accession>
    <name>A0A0Q8VH43_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Zinc metalloprotease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_03030</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M50B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892824.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56805">
        <property type="protein sequence ID" value="KRC56805"/>
        <property type="gene ID" value="ASE19_03030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1395197at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041489">
        <property type="entry name" value="PDZ_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004387">
        <property type="entry name" value="Pept_M50_Zn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008915">
        <property type="entry name" value="Peptidase_M50"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42837">
        <property type="entry name" value="PTHR42837"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17820">
        <property type="entry name" value="PDZ_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02163">
        <property type="entry name" value="Peptidase_M50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="11" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="360"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="422"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="10">
        <location>
            <begin position="172"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC56805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="450" mass="48188" checksum="5C389FF7E2822619" modified="2016-01-20" version="1">MTALLYLLGVVIFAVAILASIGLHELGHMIPAKKFGGKVTQYFIGFGPTVWSKQIGETEYGIKAVPLGGYVKIVGMLPPAATEVADTVEVDADGNQVVKVRKSNTGMFTQLISDARAAEWEHVKPEDTDRLFYKLPWWKKVVVMAGGPSVNIAIAFLIFAGVFATYGNAGDATVETTIQEVQGCILPPEENGRVCTREEVAEKPTPAYSAGIKAGDRIVSFNGTAVTDWDQVQKLVRANGNRRASIVVERGGRERTIETATVVDLRDIGNDEKKEVGFLGVSPRQHPTTGGVGYTIEQMGQMTVDVAKSLTTLPAKVWGVAQAIVGVKERDPMGPVSLVGGGRLAGEVASHDEISVSDKFVSLLMLVAGFNFFIGMFNFVPLLPLDGGHIASALWEALRRGLARLRRRPDPGYVDAAKLLPVAYVVAGALLVMGVVLIVGDLVVPVHLES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH99</accession>
    <name>A0A0Q8VH99_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavin reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04370</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894358.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54723">
        <property type="protein sequence ID" value="KRC54723"/>
        <property type="gene ID" value="ASE19_04370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1681849at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IclR-ED" evidence="1">
        <location>
            <begin position="167"/>
            <end position="387"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="388" mass="41469" checksum="643BF6DC8A32F92A" modified="2016-01-20" version="1">MFGDTSQVDPARFREVLGQYPTGVVVVTAVDAAGEPIGMTVGSFTSVSLDPPLVAFLPSQSSSSWRALRESGDAFCINVLGSGQEDLCRAVAMRKTDKFAGFDLRESPAGNPVIDGAVVWIDCVTEQVYPGGDHDIVLGRVLDLDHGSPDQPLLFFRGGYGSFTPLSLASGDTELLSHLGEIDLGRPHMESLANGFDTEVTAIVLVNDEMVLAASAGRTDIAVAPTRVGQRLPFMPPIGSCFAAWGDSALREAWVRSVADSLDSEQVDVLRRVPDLVRERGYAVALGHQAGAHLELVATRINAGDPDVSTTSMRDAFFKALDHYNQLGDLDDVELRSLSAPVFDANGRVAYMLTMWGRGDRVTSDELRGRADALCATAAAASRAILDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHH5</accession>
    <name>A0A0Q8VHH5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03450</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892890.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56872">
        <property type="protein sequence ID" value="KRC56872"/>
        <property type="gene ID" value="ASE19_03450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1832160at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="138" mass="14387" checksum="203355D504F18F01" modified="2016-01-20" version="1">MSETSVPAAGPATTDPAEVELRLPADGAYASVLRTLTAGLAARLDFTLDDIEDLRIAVSEAAAMVLDEADEGTVLDCRFRLLPGELAITIGAVAQEPAAPDYESFGWQVLATLAAEAAIDSAPGHYAVRLTVRSSLES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHH7</accession>
    <name>A0A0Q8VHH7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HATPase_c domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_02690</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892765.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56747">
        <property type="protein sequence ID" value="KRC56747"/>
        <property type="gene ID" value="ASE19_02690"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="64"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="102"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="131"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="HATPase_c" evidence="3">
        <location>
            <begin position="416"/>
            <end position="507"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="504"/>
            <end position="523"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="523" mass="55289" checksum="7412096B223BB715" modified="2016-01-20" version="1">MASSQTFAVVGAARLFALLAIGGPILWLRQSEGVIALLLLALVWIYQGATATRRELELSLSPTTEAAAIGIISGVSMVYGPSILVALVVPPLYATAVAGTRTMVRTVLVEVIAVVAMALMWWEKITSEQAVAVFTWAMAGLGLSLIASVTFSSSRQPDPLAPYRDAQEHLKQLLALAGSLSSGLDVGALGGELLSEVGDRIPNRGLALYVPRGDALTPVASTVDLDPEALAACETLAGDVLRGTPEHNDTVEIGQGFAFRVSDQAIVAGLRPIGSEPSTVPLTEVAASLGDNAVKLDAALLFAQFRDAATADERNRLAREMHDGVAQDIASLGYLVDALAARPADEQQAKTFAILRERVSVVVAEVRRSVMNLRTSIGEAESLGGAISSVARHLSESSGIPIRVRLDEQPQRLRPEVEAELFRIAQEAMNNAVKHARATSIDVRCQVYAPEAIITVTDDGVGLQSARSDSHGLKIMRERARLIGAELVVRDNASRGLTVSVSLKVPRHPAGSGPADSTPEEMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI52</accession>
    <name>A0A0Q8VI52_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_02550</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893063.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57028">
        <property type="protein sequence ID" value="KRC57028"/>
        <property type="gene ID" value="ASE19_02550"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="79"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="112"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="214"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="276"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="75"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC57028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="305" mass="34619" checksum="84CC39FBFA866006" modified="2016-01-20" version="1">MLRRQRRSRWDLKLSPYLYVSPFFVLFALVGLFPLLYTGFLAVHDWNRAYYVRGEYVGLDNFTWVLHDPVFRKSLVNTFSIFLMSSVPQVLLAVSIAGLLDNRLRGRTFWRMSVLLPFVVAPAAAVLIFGSLFADQSGVVNGFLRELGFDGIRWHVDRWWSHLAIAGMVNWRWTGYNALIFLAAMQAVPRDLYEAAALDGAGRVRQFLSVTLPMIRPTMVFVIVTSTIGGLQVFTEPRLFDDTPSREGGADHQFMTTTLYVYVKGIEDQFYGRASAAAWILFLIIVAIAVLNFALTRLLTRRSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI88</accession>
    <name>A0A0Q8VI88_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03390</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893084.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57051">
        <property type="protein sequence ID" value="KRC57051"/>
        <property type="gene ID" value="ASE19_03390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2048446at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="84" mass="8532" checksum="B9FABF74E8ABD423" modified="2016-01-20" version="1">MSGRDHLSKGEIAKDAIQAGAEAAATTVGEVATILTKAVGDVAAAVGGFATEVFEIRDSSRRALAEHGEEKAVEAPAIDEIDPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIB8</accession>
    <name>A0A0Q8VIB8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">rRNA methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895170.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53618">
        <property type="protein sequence ID" value="KRC53618"/>
        <property type="gene ID" value="ASE19_10435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1422015at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001537">
        <property type="entry name" value="SpoU_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00588">
        <property type="entry name" value="SpoU_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SpoU_methylase" evidence="1">
        <location>
            <begin position="62"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="215" mass="23878" checksum="FDDDD7AB2F392B32" modified="2016-01-20" version="1">MPHGPPEVGVGPWPGAWPEGPGSEVYDAALLREGDRRNVVDRYRYWSMEAIVADLDQRRHGFHVAIENWQHDFNIGTIVRSANAFLAAEVHIVGNRRWNRRGAMVTDRYQHVRHHPTVAELHSYLAERAVPLLGIDNLPGSAHLETMQIPREVCFLFGQEGPGLSEAAREACDGTFSIAQFGSTRSINASAAAAIAMHSWVRQHADLGSDEAWRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIJ3</accession>
    <name>A0A0Q8VIJ3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">zf-CGNR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04190</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893024.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57007">
        <property type="protein sequence ID" value="KRC57007"/>
        <property type="gene ID" value="ASE19_04190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1478254at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010852">
        <property type="entry name" value="ABATE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023286">
        <property type="entry name" value="ABATE_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021005">
        <property type="entry name" value="Znf_CGNR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35525">
        <property type="entry name" value="PTHR35525"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07336">
        <property type="entry name" value="ABATE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11706">
        <property type="entry name" value="zf-CGNR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160904">
        <property type="entry name" value="SSF160904"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="zf-CGNR" evidence="1">
        <location>
            <begin position="140"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="21091" checksum="BF9736BDA7A2FA9D" modified="2016-01-20" version="1">MAQNAEVLGDRPAPGRLEGLRMLLNTDDRFHGFDRLDDLERLPLFLLHYGVLFEGETLTRRDVAALRTFRDALRGFLVEPDEEAAAALNAVSQAYPLVVRVAAGGTSSLQRCAPGEAGDRVIARQIETLHRAIEDGRWTRMGRCGREDCQWIFYDSSRNRSARWCSADPCGDVMKTRAWRERQRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIT5</accession>
    <name>A0A0Q8VIT5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SCP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_24080</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57416">
        <property type="protein sequence ID" value="KRC57416"/>
        <property type="gene ID" value="ASE19_24080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.33.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014044">
        <property type="entry name" value="CAP_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035940">
        <property type="entry name" value="CAP_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00188">
        <property type="entry name" value="CAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55797">
        <property type="entry name" value="SSF55797"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SCP" evidence="1">
        <location>
            <begin position="13"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="130" mass="14703" checksum="959377A117A55893" modified="2016-01-20" version="1">MFNNVLESAAVLLTNTKRALAGCRPLRINTDLRQAARNHSRRMAQAGVMSHQLPGEMRLGRRITASGYTGWTRVAENIAAGFNTAPRVMSAWWASYSHHRNIADCSLREIGIGVVWTGRRMYWTQDFGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJG8</accession>
    <name>A0A0Q8VJG8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytidyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23355</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893907.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57701">
        <property type="protein sequence ID" value="KRC57701"/>
        <property type="gene ID" value="ASE19_23355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1465613at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CTP_transf_like" evidence="1">
        <location>
            <begin position="7"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="141" mass="15428" checksum="B5625325E6056277" modified="2016-01-20" version="1">MGPVIGYVPGAFDLFHIGHLNALRQARQWCDVLVAGVVADEVCLETKGIVPTVPLEERLEIVDAIGIVDAVYAERTASKTESWRDVGFHRIFKGDDWAGTAKGRRLEQDMAALGVEVTYFPYTLQTSSTALRKALAHRGAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJX1</accession>
    <name>A0A0Q8VJX1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">TM2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_23350</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893906.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57700">
        <property type="protein sequence ID" value="KRC57700"/>
        <property type="gene ID" value="ASE19_23350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687355at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007829">
        <property type="entry name" value="TM2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05154">
        <property type="entry name" value="TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="77"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="101"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="TM2" evidence="7">
        <location>
            <begin position="73"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="20"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC57700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="140" mass="14495" checksum="082D8BC6C27D5D14" modified="2016-01-20" version="1">MSDSYPQSPGQDPHQPQDPSAQGQPTPPPYGAPPPQGAPSPYQPYGAPGPTGYGFSPAAPWGVDPVTGVPYSEKQKVVAGVLQILLPFGIGRFYIGDTGTGIAQLLVSLVTCGIGGIWSMIDGILLLTGRPTDSEGRPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK58</accession>
    <name>A0A0Q8VK58_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytidine deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23450</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893924.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57718">
        <property type="protein sequence ID" value="KRC57718"/>
        <property type="gene ID" value="ASE19_23450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2043951at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="114" mass="11372" checksum="BD2C41EAB18BD31E" modified="2016-01-20" version="1">MTDLSTEDKKLVTLARATRARIQAAEGAAVRDTEGRTYAAATVDLPSLQLSAVQAVVAMAVAGGSSGVEACVVLGDAQDLTEPDAAVLGDFSGADGVTVHVGDARGTIAGTRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK59</accession>
    <name>A0A0Q8VK59_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two-component system response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_23660</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893961.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57755">
        <property type="protein sequence ID" value="KRC57755"/>
        <property type="gene ID" value="ASE19_23660"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="14"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="139"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="139"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC57755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="238" mass="26431" checksum="A7960A006F6788D8" modified="2016-01-20" version="1">MTETATRPDGTPLRALVVDDEVNIAELVAMALRYEGWAVETAHTGGDAVSAVRGQRPDVIVLDMMLPDYDGMEVLRRVRADDPTVPVLFLTARDAVEDRVAGLHAGGDDYVTKPFSLEELVARLRALVRRAGSAVEQSRSTLVVGDLVLDEDSHEVTRAGEEISLTHTEFELLRYLMRNPRRVLSKAQILDRVWNYDFGGQANVVELYISYLRKKIDAGREPMIHTMRGAGYVLKPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKU3</accession>
    <name>A0A0Q8VKU3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Transport permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_05405</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ABC-2 integral membrane protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894188.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54893">
        <property type="protein sequence ID" value="KRC54893"/>
        <property type="gene ID" value="ASE19_05405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1891092at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC_2_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006648">
        <property type="entry name" value="DrrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51012">
        <property type="entry name" value="ABC_TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="53"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="82"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="137"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="162"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="198"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="253"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="domain" description="ABC2_membrane" evidence="9">
        <location>
            <begin position="34"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU361157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC54893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="279" mass="29988" checksum="1F768A7EADCD6257" modified="2016-01-20" version="1">MTTLLPDTAPGTTSVTDADRVLPARPSLRDTVHQSLAMAWRATKKMRRNPEQFFDVTLQPILFTAMFAYIFGGAISGSVADYLPLIIPGILAQTALTASMATGTQMREDMDKGVFDRFKSLPIARIAPLAGPMLADLIRYGTAATITILVGLAMGYRPGGGVLGVLAGWALTIFAGWALSWIFCWLGTVARSAQAVQGIGMMIMFPLTFLSNAFVPMETLPGWLEAFVKINPVSHVVTAVRDLMNDGNLTGEVGWALLGCTVVVAIFAPLAVRSYSRKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM44</accession>
    <name>A0A0Q8VM44_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_02120</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892666.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56649">
        <property type="protein sequence ID" value="KRC56649"/>
        <property type="gene ID" value="ASE19_02120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1022681at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05830">
        <property type="entry name" value="Sortase_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005754">
        <property type="entry name" value="Sortase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023365">
        <property type="entry name" value="Sortase_dom-sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042003">
        <property type="entry name" value="Sortase_E"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04203">
        <property type="entry name" value="Sortase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63817">
        <property type="entry name" value="SSF63817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="35"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="251"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="276"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="304" mass="31869" checksum="38FDED3BEAEE8D11" modified="2016-01-20" version="1">MSADPTRTRVHDGEVDASPPPGRGEEQVRVAGGRVMLALSLLIGWFLLYLLVLSSFEQNHAQNVLYGELRTQLAEGTAPTGAPVRAGAPVALLDIPSLDVESLVVVEGTRSRQLQDGPGHRAGTVLPGQEGVSVVAGRSTSYGKPFADLPDIVRGARVVVTTAQGEFEYLVTGTRFDGDPMPAPPGEGAGRLTLVTSTGTGSWLSRLQPSRTVYVDAELRSGAAAAGPRSAPDPEPTLLASHVDRLSLAELALALQVLLGALAGFVWAWNRWSRKAAWIAGAPVVVAALWLVSSIGARLLPALI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM90</accession>
    <name>A0A0Q8VM90_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08770</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895567.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54135">
        <property type="protein sequence ID" value="KRC54135"/>
        <property type="gene ID" value="ASE19_08770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="241" mass="24413" checksum="BCEDF74955A988A9" modified="2016-01-20" version="1">MPLTVVTGGTRGIGAAVAARLAAEGHDLVLGHRSDTESAAATVASVREAGVRCVSVAGDLTTDEGIEALLSAADELGPLTGLVNNAGATYRFAPLAETPADEVRRTIEVNLTAPILLARAALQRLDRGGVIVNITSGAATIGSPGEYVHYAAAKAGLDLLTRGLGLEVADRGIRVVAVAPGLIATELHATTGDPGRVDRMAPQIPLGRAGQPAEIADAVAWLMSEAASYVTATTLRVAGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMT9</accession>
    <name>A0A0Q8VMT9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH marR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06085</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894064.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55010">
        <property type="protein sequence ID" value="KRC55010"/>
        <property type="gene ID" value="ASE19_06085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1744037at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="30"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="148" mass="16744" checksum="FE4065F089ED95BD" modified="2016-01-20" version="1">MAGNEALEQRSEQARSIAAVFSRLETQRRAWEQRTPLGVSEMRLLWVLQEPDEWTLRDIAEHLGLEQSTVNRQVNAAVAAGLVTKLRGDDQPTYQFRASDQGARMFESCAGQMLDRYQAALDELGDQGDLFVDLLDRFVDRLLADMDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN35</accession>
    <name>A0A0Q8VN35_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Nudix hydrolase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_22875</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892574.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58910">
        <property type="protein sequence ID" value="KRC58910"/>
        <property type="gene ID" value="ASE19_22875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1538300at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="4">
        <location>
            <begin position="1"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC58910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="15819" checksum="84687D45331C5E8E" modified="2016-01-20" version="1">MTRRFASIILVDPRGWILLQERDENPVIDPERWGFVGGHVDAGEDPDDAAYRELAEETGLRMAPPALPLWRELTVFHEGYGSHDQVHVYAAATTARDGDIVLGEGRQIVFVDPARLGDLPLGAAAAMILPDFLASDRYQELLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNC9</accession>
    <name>A0A0Q8VNC9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22695</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892608.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58875">
        <property type="protein sequence ID" value="KRC58875"/>
        <property type="gene ID" value="ASE19_22695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1818024at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="209" mass="20922" checksum="8110208EF89D33C2" modified="2016-01-20" version="1">MDTRRTLPFALLALGGLAFIAGGATHPGDSGSGTKTEQLHEMLVQTSWYPSHALLLLGTVGFAAGAAALRDRGTAATRSVARVATVVGTVAILGMAVHLLEGLNADALADGRANLFAQVQAVNETVVDAAWGLAFAALALVGGLTRSIGNVVTAALGAVGGAAFALASATIAFTDAFDPLFPVSALLGTWAISIGVSGTRENAKTPVTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ30</accession>
    <name>A0A0Q8VQ30_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glucose-6-phosphate 1-dehydrogenase</fullName>
            <shortName evidence="5">G6PD</shortName>
            <ecNumber evidence="5">1.1.1.49</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">zwf</name>
        <name evidence="9" type="ORF">ASE19_00245</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the oxidation of glucose 6-phosphate to 6-phosphogluconolactone.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>D-glucose 6-phosphate + NADP(+) = 6-phospho-D-glucono-1,5-lactone + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:15841"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57955"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:61548"/>
            <dbReference type="EC" id="1.1.1.49"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the glucose-6-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.49" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896832.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59508">
        <property type="protein sequence ID" value="KRC59508"/>
        <property type="gene ID" value="ASE19_00245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1153269at2"/>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004345">
        <property type="term" value="F:glucose-6-phosphate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00966">
        <property type="entry name" value="G6PD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001282">
        <property type="entry name" value="G6P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019796">
        <property type="entry name" value="G6P_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022675">
        <property type="entry name" value="G6P_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022674">
        <property type="entry name" value="G6P_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23429">
        <property type="entry name" value="PTHR23429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02781">
        <property type="entry name" value="G6PD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00479">
        <property type="entry name" value="G6PD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000110">
        <property type="entry name" value="G6PD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00079">
        <property type="entry name" value="G6PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00871">
        <property type="entry name" value="zwf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00069">
        <property type="entry name" value="G6P_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1 5" id="KW-0313">Glucose metabolism</keyword>
    <keyword evidence="2 5" id="KW-0521">NADP</keyword>
    <keyword evidence="3 5 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G6PD_N" evidence="7">
        <location>
            <begin position="11"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="G6PD_C" evidence="8">
        <location>
            <begin position="196"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="247"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="189"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="242"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="333"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="479" mass="52941" checksum="BC61ED729C80A1C1" modified="2016-01-20" version="1">MSNELPPHVLVLFGATGDLAARKLFPGLYRLAAAGRLPDHFAVIGSGRHSPGSDEEFRTHVRDALTEFVGDLDTAVAERLLERIRFVASSADDGRALGEAVREAEDQLLAECGGCLLGDVRRLLYLSVPPGAVKGMVGMLDREDLVTRSRLVAEKPFGTDLATARELQAVLGTAFADDQVFRIDHFLGKEAVQNILALRFANGLFEPAWNRHSIESVQIDVPEKLTVEGRGSFYEGTGCLRDMVTTHLAQLLGFVALEDPHAFRASAIRAAKTATFSAVRPIDPERVVFGQYDGYRSEPDVAEDSTVETFVAAEVWIDNDRWRDVPFYLRTGKAMADGRRTITVRFRDPRHRWLKPEDGGVPEPNELVIELADQPRVAIDVRAKRPGPDMALVEGVFRLDLVCDVPGADPLEAYERLLLDVMRGDRTLFISAEEVDRLWEIFQPVLDRRPPTQTYAAGTWGPAAALDLPIGGWRLGNHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQF7</accession>
    <name>A0A0Q8VQF7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">50S ribosomal protein L17</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rplQ</name>
        <name evidence="7" type="ORF">ASE19_06425</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="3">Part of the 50S ribosomal subunit. Contacts protein L32.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the bacterial ribosomal protein bL17 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894472.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55063">
        <property type="protein sequence ID" value="KRC55063"/>
        <property type="gene ID" value="ASE19_06425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1838961at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01368">
        <property type="entry name" value="Ribosomal_L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000456">
        <property type="entry name" value="Ribosomal_L17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036373">
        <property type="entry name" value="Ribosomal_L17_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14413">
        <property type="entry name" value="PTHR14413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01196">
        <property type="entry name" value="Ribosomal_L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64263">
        <property type="entry name" value="SSF64263"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00059">
        <property type="entry name" value="L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01167">
        <property type="entry name" value="RIBOSOMAL_L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="128"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="150"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="193" mass="20569" checksum="F4B9A7DAFE96B3B5" modified="2016-01-20" version="1">MPKPKKGPRLGGGAAHQRLILSNLATALFEHGRITTTEAKARTLRPYAEKLITKAKKAHAGENPLHQRREVLKDIRDKGVVHTLFTDIAPVFAERPGGYTRITKIGPRQGDNAPMAVIELVTEAFTPSAPKAKPATEAAPAPVEEAPESEVVETGVEETEAAEVEAPEAEAEVAEEAADEAPAEESAEDADKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQP8</accession>
    <name>A0A0Q8VQP8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01365</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917915.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59700">
        <property type="protein sequence ID" value="KRC59700"/>
        <property type="gene ID" value="ASE19_01365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="977422at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="71"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="780" mass="80985" checksum="8B20CCCDCA985E59" modified="2016-01-20" version="1">MVTTPAAQAAGQSISTTTNVGAPTGNGHCLNPNTTSDPTNCNAYASKADVWLSNLPQGLPEGDYFFAVSDPGSQSDPNDGSDGLLSAGTHTDRSFRIENGHVTILGDHLKFADRVQVFPFADTTNGGGVYNLSVCSLAGGYPVVSSDCTHDSFKVGAAPVEAKPLTIVKDAAGTYDRTYTWDIDKAVDDDTLEGREGTSVTANYTVTVEHDGGEVDNIGVTGDITVFNPNGAAVTADVTDVLSDGTVCTVDGGTDAVIPAMGDTVLGYTCDLTSLPQGQLDNTATVTWEEQTLGNTDHLAAGDESFTYDDVTFTGNDIDECIDVDDTVEGTLGTVCVGDDNPTELSYDRTWNLDTPGCQDYDNTASFETNDTGSTDDASQSVEVCTIDVLDALTVSKEAEGDYTTTYKWSVDKSVDDATLSGTSGDVTAHYTVKVSHDAGTITGTEVHGTITVTNPNSVAVVADIADTFSDGAVTCEVDGDGTGVTVQPGDTELSYTCDLPDGSVPASDLTNTVDVTWADQDPAPLTVLDAGNATDTTDAIDFTENAVDECADVTDTYAGDLGQVCVGDANPTTFDYSRTWTLSNPGCATYGNTATATAVDSGTKSSDSQDVQVCKTTVDTGAHTIGFWTNNNGQALIKAGPSTGGVCNAATTLRTYNPFKDLSATATCTQLAKYVADVISKAKASDMTTMLKAQMLGTALSVIHLNPALANLNVDLAHMDGKDVRASFGGASSMTVGNALTFVSNKLVGSSWYGGSKVLQEGAKNLFDAINNSRGIYTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQV3</accession>
    <name>A0A0Q8VQV3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00310</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896821.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59519">
        <property type="protein sequence ID" value="KRC59519"/>
        <property type="gene ID" value="ASE19_00310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2068460at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="138"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="161" mass="16910" checksum="24D876447B81CDE2" modified="2016-01-20" version="1">MIPELAGYTPTDLAAASPTGLALVEEKIAEVIKTLEDELDNLAKVDFPTSGHIAKGSFGSVGPSALLALHHAKAHGVVTDTLTDLRTDLLDFQKAIHEARQLIKTTDENAEGNALALLKSTEDLDLGAYAYQQAQVDHRNDVATATPETSDTTGTSDGGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQW3</accession>
    <name>A0A0Q8VQW3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Translational regulator CsrA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">csrA</name>
        <name evidence="3" type="ORF">ASE19_01315</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'-UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer; the beta-strands of each monomer intercalate to form a hydrophobic core, while the alpha-helices form wings that extend away from the core.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CsrA/RsmA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896650.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59691">
        <property type="protein sequence ID" value="KRC59691"/>
        <property type="gene ID" value="ASE19_01315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2032250at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048027">
        <property type="term" value="F:mRNA 5'-UTR binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006402">
        <property type="term" value="P:mRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045947">
        <property type="term" value="P:negative regulation of translational initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902208">
        <property type="term" value="P:regulation of bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006109">
        <property type="term" value="P:regulation of carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.4380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00167">
        <property type="entry name" value="CsrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003751">
        <property type="entry name" value="CsrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036107">
        <property type="entry name" value="CsrA_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34984">
        <property type="entry name" value="PTHR34984"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02599">
        <property type="entry name" value="CsrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117130">
        <property type="entry name" value="SSF117130"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00202">
        <property type="entry name" value="csrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0678">Repressor</keyword>
    <keyword evidence="1 2" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0810">Translation regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="81" mass="8376" checksum="CA2641BFB65C838F" modified="2016-01-20" version="1">MLVLSRRVGESVVIGEGSPDAVTVTVLEVRGDVVRIGIDAPRSVAVHRAELLAELADANAEAASPTADAVASLTQALRSRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR57</accession>
    <name>A0A0Q8VR57_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03825</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892958.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56941">
        <property type="protein sequence ID" value="KRC56941"/>
        <property type="gene ID" value="ASE19_03825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="176"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="218"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="259"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="287" mass="31165" checksum="A07F3461BBC409F5" modified="2016-01-20" version="1">MTTTPDAPRRERIPAPEPKDSEISLGAAAAGVRAALTTGGEILRFSWQVTRSLPDVRAHWTEVVRQAAILVLSSALIIWAMQFVMGTMCGTEAIYTLKQVGAPIYSGIFNAWCAVRELVPYMWGYILAAKIGCGLVAEIGSMRIAEEVDALEVMGVDSRSYLVGTRVVAAWLSMPFLYAVSLGMMSLGEILVTVYYVGGVSPGGHMYIFWLYQNPLDFMYSMIKGMTMGTAIVFVACYYGYTVRGGSVEVGKNTARSMVLNMVLIHMIGALGTQLFWGLSPNAPIGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VT13</accession>
    <name>A0A0Q8VT13_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22645</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892616.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58867">
        <property type="protein sequence ID" value="KRC58867"/>
        <property type="gene ID" value="ASE19_22645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1133938at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="403" mass="42819" checksum="9026050BDC366944" modified="2016-01-20" version="1">MDLNSAIAMLGRTVTVISESDKSLLAEIAAAPGFKAPTKALSSVQSLGGGLTLQPADALLGLAYATRMHHVHPDIYELYRLWSWMRYLGVFDVDGNDSLILSNEARQIRGNQRRVLSEELGIGFAKVAAERWMAAELGFGTVTLVDVDVVPDGGVLPVAGAHLATKISTRRPDYFLVHLDGSGVSRVRVLECKGTLDPGNQVPQLAKAVRQLEGIAIDGAMPVGLAVSAALPDDGPVRLRSVDPHDDEFKFNVRLPPQSPAAVRGDAPVDAQEAVRGVVEAGWAHVADFAGSTEVAAYWAPAQLRGRFLERPADATRVETPVGICVGRQLAFQSGNQRVSVFCGVIDVLHDALASGDRDRVLDAQGYVADVSQSSRDGALSEVRDHAVAVGADGTVLELRILG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTL8</accession>
    <name>A0A0Q8VTL8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Macrolide ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_23685</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893966.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57760">
        <property type="protein sequence ID" value="KRC57760"/>
        <property type="gene ID" value="ASE19_23685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="768211at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="284"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="333"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="367"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="domain" description="MacB_PCD" evidence="8">
        <location>
            <begin position="21"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="7">
        <location>
            <begin position="314"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC57760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="408" mass="41433" checksum="F0B4E56AB52A2A67" modified="2016-01-20" version="1">MSWWETVRSGLAAIRSHRLRSSLTVLGIVIGISSVILTVGLGQGAQKEVEDQIDALGSNLLIVSPGSTTDSSGVRGGFGSASTLTFADATAIADPDVVPDAAAVAPTTSSSVSLVNGDTNWTTSLVGTTTAWLDVRSRELSAGRFYTAEEAAQGAPVVVVGADTASELFGRRSPVGQQVTVDGTRLTVIGVLTSSGASSSGTSEDDLGVVPVGTASRLTGSTADTVSTIYVEAASEDALAAAYQEVQALLANRHGVTSADADFSIATQDSLVETANETNRTFTVLLGGVAGISLLVGGIGVMNIMLVSVTERIREIGLRKALGAAPRVIRRQFLVEASLLGLTGGVVGVLVGVLGAQVLPHFIDQTVAISALATTAALATALALGVGFGVYPASRAARLTPIDALRSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VU56</accession>
    <name>A0A0Q8VU56_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">F5/8 type C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02005</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892648.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56631">
        <property type="protein sequence ID" value="KRC56631"/>
        <property type="gene ID" value="ASE19_02005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="145355at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021798">
        <property type="entry name" value="AftD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11847">
        <property type="entry name" value="DUF3367"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="218"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="286"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="322"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="370"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="402"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="1204"/>
            <end position="1230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="1251"/>
            <end position="1275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="1312"/>
            <end position="1331"/>
        </location>
    </feature>
    <feature type="domain" description="F5/8 type C" evidence="2">
        <location>
            <begin position="670"/>
            <end position="747"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1343" mass="141535" checksum="7B44A5D5D9D1BF12" modified="2016-01-20" version="1">MKDTEEQRGTARGLAVTAYALLTLLMLLQQPGETTYDTRAELTQRPGDFLAGAFTLWHPESNFGEFQNQAYGYLFPQGTWFWLNDLLGVPDWVGQRLWSALVLVVAWEGARRVARAVGLADLPALLAGAVYALSPRLLGTVGVQTAESLPGAVMPWLVLAVVPHLRGRLGARSAALMSGAAVVCMGGVNAVETAGSLPLAAILVLWGARRGLAERRFVLGWGAAVAAGCLWWAVPLAVLARYAPPFYEYVESAGDTTSLVGWSESVRGDSSWLGYLLSGDQPWWPAAFHLATEPLLVVVAAVVAAIGLVGLTRIESDLRRPLLLAVLLGLGCLTVAHGGPAGSFLADPVRSLLDGPLQIFRNVHKIDPVVRLPLAIGFATAVALAAQELVRRRPRLETAHRGLLVLPLLLVAVLGQPLVLNQSRTTGWDEIAEPWQQAKAFLADQHAGRVLVVPGSSFALQDWGWTIDEPLAILGGTDVVSRTQVPLVPGETIRYLSALDQTIATGRATEALADELARAGITHVVLRRDLLRQQTRSPHPGGAAVSLARAGLQRLAGFGETADGAATVEVFAVPHREDRLRTTDADDVLTVRGTPESVLALQATGVLDPARATVLEGEPGWDPPADVVTDANQRRERAFGNNDEALSALMGADDGFRVERAVHDFPAGPSGHPVVAGYDGGLDRVSASSAQGYADNYGAVTVESGPQAAVDGDLDTRWVSSGIGRADQQWLRLDLTEPERVHEVTVTPVADDRLVVPIREIEVVAGRQRVRAKVGADGVPVVVPLDGSAVDRVEVRVVSAATDARAARVGLREVRIDDLRPTRTYVLPGTAPDDAALVFSAVPGRRACSITLGRPDCDVARIRGAEERGGLDRSFVTDAAARVRITGHVVARSTPEAALLLAPFSDRLPVGATSSFGQDPKVAGRFAHDGEPSTTWVSDDTDLYPTLSFRWPEPTTITGLRVPTAGVDGAPVSAVVTGDDREDQVVTLDTDDTIELAKPVTTRALTVRFEKAAGWSHVVVPEIALEGADVTQPFLADAPTGAVCGFGPEVVVDGRRLATRVTGTMADIANGSPMALEVCDADGTGEPVATDLGAGEHRLAVVPNAEMEALDLAVVPDDTVAAPGPGRAVEIEQWGSSRRTAQVAAGPATVLSVPENFNDGWVAEADGRRLEPLRVDGWQQGWVLPAGGAVEVELRYAPERTYDVVLPVGLAVSGGVLLAGLAALVLTLLHRRRYDAEPVAWPDAEPWTGRLWLVTAVGVTLLLGPVAAAGLLAGSLLRRPVGLPAAAGALLVASGVLDAWTSASVVADLADLSAAVAVGLVAGLALGPPSWSRTRTKSRKVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUU7</accession>
    <name>A0A0Q8VUU7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_03710</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892936.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56919">
        <property type="protein sequence ID" value="KRC56919"/>
        <property type="gene ID" value="ASE19_03710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1233189at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="15"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="48"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="83"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="149"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="179"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="15"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="217" mass="22832" checksum="E4FB7A3DBF1F26A4" modified="2016-01-20" version="1">MTWLRLNREQVVDLLWQHLSLAIPAVLISIVVAIALGRVAWRWPRVGAVVLGAASLLYSVPALPLLIVIPVLLSIPLRSETNLVVALAVYGTALLAGTAADAFRSVDSRVREAAEAMGYSPTGIFWRVDLPLSLPVLVSGIRVVSVSTVSLVTIGALVGISSLGSLMTDGFQRGIREEVLTGVVLTMVLAIVLDLVVVAAGAALTPWQRRTKAGAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VY39</accession>
    <name>A0A0Q8VY39_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">Thiazole synthase</fullName>
            <ecNumber evidence="4 6">2.8.1.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">thiG</name>
        <name evidence="8" type="ORF">ASE19_00610</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>1-deoxy-D-xylulose 5-phosphate + 2-iminoacetate + [sulfur-carrier protein ThiS]-C-terminal Gly-NH-CH2-C(O)SH = 2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate + [sulfur-carrier protein ThiS]-C-terminal Gly-Gly + 2 H(+) + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:26297"/>
            <dbReference type="Rhea" id="RHEA-COMP:12908"/>
            <dbReference type="Rhea" id="RHEA-COMP:12909"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:62899"/>
            <dbReference type="ChEBI" id="CHEBI:77846"/>
            <dbReference type="ChEBI" id="CHEBI:90619"/>
            <dbReference type="ChEBI" id="CHEBI:90778"/>
            <dbReference type="EC" id="2.8.1.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Cofactor biosynthesis; thiamine diphosphate biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homotetramer. Forms heterodimers with either ThiH or ThiS.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ThiG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.10" evidence="4 6"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896771.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59569">
        <property type="protein sequence ID" value="KRC59569"/>
        <property type="gene ID" value="ASE19_00610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="784095at2"/>
    <dbReference type="UniPathway" id="UPA00060"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990107">
        <property type="term" value="F:thiazole synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04728">
        <property type="entry name" value="ThiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00443">
        <property type="entry name" value="ThiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033983">
        <property type="entry name" value="Thiazole_synthase_ThiG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008867">
        <property type="entry name" value="ThiG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34266">
        <property type="entry name" value="PTHR34266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05690">
        <property type="entry name" value="ThiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0704">Schiff base</keyword>
    <keyword evidence="5 6" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ThiG" evidence="7">
        <location>
            <begin position="6"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="region of interest" description="DXP binding" evidence="6">
        <location>
            <begin position="183"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="region of interest" description="DXP binding" evidence="6">
        <location>
            <begin position="205"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with DXP" evidence="6">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="157"/>
        </location>
        <ligand>
            <name>1-deoxy-D-xylulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="254" mass="25741" checksum="40B202E56F6DD173" modified="2016-01-20" version="1">MTVLTIAGVELSSRLLLGTGGLPRVSLVGPVLAAAEPALVTVSMRRASSLADGGLLAELRAAGVRLLPNTAGCLSAREAVLTAELAREALGTDWVKLEVIGDEASLLPDVVELLDAAEQLVRRGFTVLPYATDDPVVARRLVDAGCAAVMPLGSPIGSGLGVLNPHAIAAVRAAVDVPVVLDAGVGTASDAALAMELGCDAVLAATAVTRADDPVVMARALRLGVEAGRLAYEAGRIPRRPTARASSPVLGRIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VY79</accession>
    <name>A0A0Q8VY79_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutamine synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01410</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glutamine synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896632.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59709">
        <property type="protein sequence ID" value="KRC59709"/>
        <property type="gene ID" value="ASE19_01410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="416474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004356">
        <property type="term" value="F:glutamate-ammonia ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006542">
        <property type="term" value="P:glutamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036651">
        <property type="entry name" value="Gln_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008146">
        <property type="entry name" value="Gln_synth_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00120">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01230">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54368">
        <property type="entry name" value="SSF54368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gln-synt_C" evidence="2">
        <location>
            <begin position="116"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="450" mass="49248" checksum="5E490B138D3E0838" modified="2016-01-20" version="1">MGHFDEDALRRLAERLQAEDVDIVRVGYSDLIGTERGRDILVNRFDRTVGDGVAFCRSVYGTSPMGDVVDIAGGLSAGLPDIVAFPDVDTVRNVPWEPGVAHVIADVFNPDGTPSEESPRMVLKRVVEQFAELGMTPIAGPELEFYVVEKDDAAPNGYRRYGEATGNVYVSGLKGDPENLLLSSLRQLAAYDIDVVAANHEFSSGQFEINLWHSPALDAADRAFRFKTAVKELARRQDKMATFMAKPFNDEGGSGFHIHFSTVDAEGKPLFDDPDGEDGLSKIGRSAIAGVLAHAPALAAISNPTINSYKRFGPDTLAPWLVDWGLDNRSAMVRIPPERGRASRMELRLGDASANPYLAIAGLLAAAYLGIRDGLEPPEKLEGYGYDTTKADRLPGDLGSALDALEADKELADILGPVFVSTFVEYKRNEVERFGQYVTDWEFREYAYHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZ20</accession>
    <name>A0A0Q8VZ20_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01530</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896611.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59728">
        <property type="protein sequence ID" value="KRC59728"/>
        <property type="gene ID" value="ASE19_01530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2117221at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="175"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="203"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="241" mass="27765" checksum="572734E1C9CD0D32" modified="2016-01-20" version="1">MDPYAVFDALDDNKVPVFALASLAMIGNYIWFAGAIAAQKRDGVYAIPLFLTFFWFAHDSSYVLHFDRWFNEYDHWFPQLFWVLIIATVCFELYYMSQTLRLGKDELARGLTDTQFRVGFLMSLAAMYVAWLWLQQSMQDPVYLDIFALTVLSYPCLAIGMMLRRGDRRGFNGVMCAGFLMMTVCYFTASTFFFGPYFQRTEYYLVGIASFVTAVAMTWVYLHLPPARAEAVTAERTKVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZS1</accession>
    <name>A0A0Q8VZS1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 10">Phosphoribosyl-ATP pyrophosphatase</fullName>
            <shortName evidence="10">PRA-PH</shortName>
            <ecNumber evidence="3 10">3.6.1.31</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10 11" type="primary">hisE</name>
        <name evidence="11" type="ORF">ASE19_23215</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>1-(5-phospho-beta-D-ribosyl)-ATP + H2O = 1-(5-phospho-beta-D-ribosyl)-5'-AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:22828"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:59457"/>
            <dbReference type="ChEBI" id="CHEBI:73183"/>
            <dbReference type="EC" id="3.6.1.31"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 2/9.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the PRA-PH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.31" evidence="3 10"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892519.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58967">
        <property type="protein sequence ID" value="KRC58967"/>
        <property type="gene ID" value="ASE19_23215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2022633at2"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00007"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004636">
        <property type="term" value="F:phosphoribosyl-ATP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01020">
        <property type="entry name" value="HisE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008179">
        <property type="entry name" value="HisE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021130">
        <property type="entry name" value="PRib-ATP_PPHydrolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01503">
        <property type="entry name" value="PRA-PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03188">
        <property type="entry name" value="histidine_hisI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 10" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="7 10 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC58967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="87" mass="9460" checksum="12CD78BB26256DF6" modified="2016-01-20" version="1">MKTFDELFAELSEKAQTRPEGSGTVRALDAGVHAIGKKLIEEAAESWMAAEHEGREATALEISQLLYHAQVLMIASGLSLEDVYANL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM50</accession>
    <name>A0A0Q8UM50_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">30S ribosomal protein S20</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpsT</name>
        <name evidence="9" type="ORF">ASE19_19615</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Binds directly to 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the bacterial ribosomal protein bS20 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895864.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46088">
        <property type="protein sequence ID" value="KRC46088"/>
        <property type="gene ID" value="ASE19_19615"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2005443at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00500">
        <property type="entry name" value="Ribosomal_S20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002583">
        <property type="entry name" value="Ribosomal_S20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036510">
        <property type="entry name" value="Ribosomal_S20_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33398">
        <property type="entry name" value="PTHR33398"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01649">
        <property type="entry name" value="Ribosomal_S20p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46992">
        <property type="entry name" value="SSF46992"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00029">
        <property type="entry name" value="S20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0699">rRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="57"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="9"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="70"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015666"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="86" mass="9455" checksum="C7CDA117C028C199" modified="2016-01-20" version="1">MANIKSQIKRNKQNEKRHERNKAVKSGLKTAIRKFREAAESGDKDNATALAREATKKLDKAASKGVIHKNQAANRKSSIAKQAASL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMP3</accession>
    <name>A0A0Q8UMP3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Stearoyl-CoA 9-desaturase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_20570</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896016.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46245">
        <property type="protein sequence ID" value="KRC46245"/>
        <property type="gene ID" value="ASE19_20570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="797871at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016717">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03505">
        <property type="entry name" value="Delta9-FADS-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015876">
        <property type="entry name" value="Acyl-CoA_DS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005804">
        <property type="entry name" value="FA_desaturase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11351">
        <property type="entry name" value="PTHR11351"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00487">
        <property type="entry name" value="FA_desaturase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00075">
        <property type="entry name" value="FACDDSATRASE"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="28"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="58"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="180"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="FA_desaturase" evidence="9">
        <location>
            <begin position="59"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="316" mass="35902" checksum="E76D4BCB322F0235" modified="2016-01-20" version="1">MTAIDDRPEPGGVRATMGGDEQSWPERLALGLFIVVPFIAFVAAIPVAWGGWLGWSDIAITFVMYGLTLHGITVGYHRLFTHKSFKPNRAVKVTLAILGSMAIEGPVIRWVADHRKHHKFSDRDGDPHSPWRYGNSLRGLTKGFVWAHVGWLFDSEQTPIEKYAPDLVKDRDLLRISRTFWVWVLTSIFLPPVLGFLLTWSWQGALTAFFWGTIVRIGLIHHVTWSINSICHTLGDRPFTSRDFSGNVWWLAIPSGGESWHNLHHADPTSARHGVKRFQFDTSARIIWLMEKVGWVRDVRWPTPERIRAKSVSPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMP6</accession>
    <name>A0A0Q8UMP6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-oxoacyl-ACP reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20680</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896033.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46262">
        <property type="protein sequence ID" value="KRC46262"/>
        <property type="gene ID" value="ASE19_20680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="256" mass="26680" checksum="E8ADAD8C7049608E" modified="2016-01-20" version="1">MGRFDGRVAVITGAARGIGFGTATRFAEEGASIAIVDLDESAAAEAAAKLPLVEGAKAIGVGANVSDGASVDAAIERVVAELGGIHVLVNNAGITRDNLLFKMTEEDWDLVMGVHLKGAFLMTKAAQKHFVEQKYGKVVNISSISALGNRGQANYSAAKMGIQGFTRTLGIELGPFGINVNAVAPGFIATEMTDATAARLKMDVDEFRRLNAEANPVRRVGFPEDIAAAVTFLSADESSYITGQTIYVDGGISLGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMR5</accession>
    <name>A0A0Q8UMR5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CoA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20885</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896070.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46299">
        <property type="protein sequence ID" value="KRC46299"/>
        <property type="gene ID" value="ASE19_20885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1910664at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13380">
        <property type="entry name" value="CoA_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA_binding" evidence="1">
        <location>
            <begin position="16"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="139" mass="14947" checksum="67CE6730FC78D5EC" modified="2016-01-20" version="1">MTSAPAHLSPTAIDFMLDEAKTWAVVGLSGNPGRTAYRIAELLQQHGKRIVPIHPSAPTVLGEQGYATLADVPFPIDVVDVFRRSEEAGRFADEAVAVGAKGVWFQLGVVDEAAFERTTAAGVPMVMDTCPAIEWRQRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN23</accession>
    <name>A0A0Q8UN23_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21320</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46373">
        <property type="protein sequence ID" value="KRC46373"/>
        <property type="gene ID" value="ASE19_21320"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="46"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="2">
        <location>
            <begin position="131"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="353" mass="37497" checksum="D1AAC57E1CBFA5B6" modified="2016-01-20" version="1">MPMNRQLSELRRHPVATAGVAVFALVAVLLTSMVAGTLSRSQRGDAITVTAVFRDATGLRAGDDVRVAGVRVGRVTGTRVGTGEDRGLAVVTLSVAADPVLHDDITASVDYLNLMGQRYVALTRPDAQADAARLADGDEIPLARTRPALDLTAMFNAFKPVFDLLQPGDINQLATNIVQVLQGQGPTIQHLLEQTAKLTSGLTDREDTLARVVDNVTLVLETTDAHKAEITALVHGLDSLTAGLAKDRDRISTSLDGIARLSATAAGVVEDARGPVVDSVDLARPWFGYLADRKDLLAETGAAVPKQLEVYLRTLGYGSYLNVYVCTLAAGLQGVPTTLDLGITGDRHSKRCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN67</accession>
    <name>A0A0Q8UN67_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PAS sensor protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21720</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896216.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46446">
        <property type="protein sequence ID" value="KRC46446"/>
        <property type="gene ID" value="ASE19_21720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="8"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="2">
        <location>
            <begin position="86"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="141" mass="15386" checksum="AD512699AE2ED6FE" modified="2016-01-20" version="1">MTAANDNYERIAIALMSSGSDAIIGTDVAGDIRWWNPGAERIFGFSPDAALGKSLDIIIPEKLRDAHWRGYREVMQTGESRYGADKMLSVPALTADGRRISVEFTLALVTSADGTLIGTVAVLRDVTGTFEELKELRRAVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNG9</accession>
    <name>A0A0Q8UNG9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4253 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22265</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896307.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46539">
        <property type="protein sequence ID" value="KRC46539"/>
        <property type="gene ID" value="ASE19_22265"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025349">
        <property type="entry name" value="DUF4253"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14062">
        <property type="entry name" value="DUF4253"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4253" evidence="1">
        <location>
            <begin position="173"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="279" mass="30789" checksum="2E421848486E8DC7" modified="2016-01-20" version="1">MSWSDARPAGLAADLWAPVRPSQSTLGELGLPDGNEVYGIDGHLLGWEAAAEVVDDAGELWLRCALQFPHTGLWPIVDRRWPIQAERRWHKPLADDGRPFWLDPYAVPSDAYDAVNVADRREYFESPGEEPGSYVSLMREFGLLETGMVLAQASTLPADPLSALVAPRGAKRLSLMACRRPADAVLMLDFGIPNDDATPGIFAGVLRSWEERFGLVPVMLNPAWTSFQVVAPPTTELEAERLAAEVFSFANDSAIQGGFQVTGGARQMVTQREWLIWWD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNH6</accession>
    <name>A0A0Q8UNH6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="11">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_22285</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46540">
        <property type="protein sequence ID" value="KRC46540"/>
        <property type="gene ID" value="ASE19_22285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="643917at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="33"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="66"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="167"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="250"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="279"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="630"/>
            <end position="655"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="667"/>
            <end position="687"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="746"/>
            <end position="774"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="10">
        <location>
            <begin position="37"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="340"/>
            <end position="573"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="10">
        <location>
            <begin position="635"/>
            <end position="872"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="944"/>
            <end position="1171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="591"/>
            <end position="615"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="373"/>
            <end position="380"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="982"/>
            <end position="989"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC46540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1171" mass="123744" checksum="63BFF5FA99A190D0" modified="2016-01-20" version="1">MTTTLTRAPAPAPGDVPVDPSRRVDWRRMRSPAAGFAVGAVATAALGQALGTVVAGRIADHPTTTLVVWLACFVVGAAAIDTAGRVVWAGVVDRAEGRLRGDLLSAALQQPLAHLTEQAVGEVLDRVDDDTHEVGTLLRQQIWMAMRTGFASVPMWLVAGFTWWPAFLLFPLVGAVTVAVMRPALGEIARRKVIEEAAWTDHAAALEEGVAGRDDLRTSLGQSFAVRRLAELSADVHEKFRRVLMIEAQLAIKVGMLLHGLLAAIAVAGVVLVSGDHLGVARLVTLFLVTTIFVGQINNLAHQLPDIQAGLGAVLRLRQLLAVEAEPVGGESVPTGALDLRIRHLDFAYAEGSFALQDVTLYVEAGHTLALVGRTGSGKSTLASLLSRAAEPPPGTIFLGGADITTLDLHELRRRVGVVTQRTEILAGTLADNITLFAAVAREEVEAAVEELGLTDWVAGLPDGLDTLLGPGGTTLSAGEEQLVAFARLLVRHVQVVVLDEATARMDPVTEARVVAAADRLISGRTGILVAHRLSTIERAEAVAVLDHGRVIQHGPRDELAVVEGPFRRLLAASDTAGFADAEPVDLDDLGDVGVGGRRRTGEPPQRPEIGPGSSLARGTWHAFWVRPWWGAWSVVLFLGGTIFAPLGAITGFLWGRVVERLEDGGSATSLLVVLVVSLLFAPILLADAFRRYPRWWIEVMLRVRMSVLLGQVRGHRLPRTPPGEVVARSMDADRYARYADRWVDFVNGLLIAGITMIAGGTVLAGGVLLVVMLTSAVASSIGRPIAGRSAARSSAARARFGRAVVSAVESARTVKLAGRTPQVHAHLRKVDDGRVEAAVFEHRVQAVLDGVPIVMVQVGVVAAWALYLWDVWGLATALLVATAVNGFDWFGRVAGAVVTEAPGVRAWQQVTSTFAGGTDLMALPDGIDLVTGAAPAPAVPPRVRLERLELSGYTAVHDDGTIGASAVDLVVERGELVLLVGQVGSGKSSLLSSLAGLIDHRGSVRWNGEEVADAESFLRPGQVAHVAQVPRVLSGTFADNILLGHDREVARPVETARLGEDVAEAGGPDAVIGHRGVRLSGGQVQRLALARALATDAELLLADDVSSALDAATEIELWAALRERHTTVIGATSKRAALAQADRVVVLVDGELAAVGPWAELSGEWGHLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNU3</accession>
    <name>A0A0Q8UNU3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22170</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896421.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46652">
        <property type="protein sequence ID" value="KRC46652"/>
        <property type="gene ID" value="ASE19_22170"/>
    </dbReference>
    <dbReference type="OrthoDB" id="990666at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="310" mass="33447" checksum="18031B9AB545DFE7" modified="2016-01-20" version="1">MLLRRLEYLAALAREGHFGRAAQACHVTQPALSAGILKLEKELGVQVVRRGQRFEGFTPEGLQVLEWAHRILAERAALDQTLAAMRGGLSGTLRIGAIPTALSVASLLTAPLRAEHPLVRFHLASMSSREIVQQLNDFEIDVGMTYVDGEPLGKVRVVPLYREHYVFLTPTDGPLGARDAVTWAEAAAAPLCLLTPDMQNRRIIDGHLADTGRTSNVVVETDTVSAIYAHLPAMGLSSIVPHTWLPAFGVPDGIRAVPLPKPRRRVHRVGLVLAGHGPESLLVRALVDVARGVDLAHGLDQSATTRSGAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UQP1</accession>
    <name>A0A0Q8UQP1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Fer4_19 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19720</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895881.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46105">
        <property type="protein sequence ID" value="KRC46105"/>
        <property type="gene ID" value="ASE19_19720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1873445at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010693">
        <property type="entry name" value="Divergent_4Fe-4S_mono-cluster"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06902">
        <property type="entry name" value="Fer4_19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fer4_19" evidence="1">
        <location>
            <begin position="11"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="84" mass="9302" checksum="49896525C048E566" modified="2016-01-20" version="1">MEQERPAVREYAADGIVVTWEPARCRHAAECVRGLPAVFDRDARPWIDPTGASADEIVTVVDRCPSFALGYRTDDGRVRTAPTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU73</accession>
    <name>A0A0Q8UU73_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD(P)-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17400</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893117.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48712">
        <property type="protein sequence ID" value="KRC48712"/>
        <property type="gene ID" value="ASE19_17400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1616572at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13460">
        <property type="entry name" value="NAD_binding_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="1">
        <location>
            <begin position="7"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="282" mass="28993" checksum="713FF0FF58FD797C" modified="2016-01-20" version="1">MSLVITGATGQLGRLVVSSLLAKGVPADQVVALGRDDERLAELGALGVTTRKVDYADAAGLADALTGADRVLLISGSEVGQRLPQHQNVIDAAKAAGVQLLAYTSIPQADTSGIALAAEHRATEEAITASGLPHTYLRNSWYIENYSGQLATYTEHGTVLGAAGDGQVSAATRADFAEAAAAALLLEQPKEVYELGGPAFSLKQLAATVSEVTGTDVTYTDVPAEELTKVLVGAGLPEAYAGILADADLGLGRGELYADPADLEQLLGRPATSLEDGLRAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUN7</accession>
    <name>A0A0Q8UUN7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">4-hydroxy-tetrahydrodipicolinate synthase</fullName>
            <shortName evidence="8">HTPA synthase</shortName>
            <ecNumber evidence="4 8">4.3.3.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">dapA</name>
        <name evidence="10" type="ORF">ASE19_18625</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 8">Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>L-aspartate 4-semialdehyde + pyruvate = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H(+) + H2O</text>
            <dbReference type="Rhea" id="RHEA:34171"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:67139"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="4.3.3.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 8">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homotetramer; dimer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8 9">Belongs to the DapA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Was originally thought to be a dihydrodipicolinate synthase (DHDPS), catalyzing the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to dihydrodipicolinate (DHDP). However, it was shown in E.coli that the product of the enzymatic reaction is not dihydrodipicolinate but in fact (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinic acid (HTPA), and that the consecutive dehydration reaction leading to DHDP is not spontaneous but catalyzed by DapB.</text>
    </comment>
    <dbReference type="EC" id="4.3.3.7" evidence="4 8"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893325.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48924">
        <property type="protein sequence ID" value="KRC48924"/>
        <property type="gene ID" value="ASE19_18625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1438588at2"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008840">
        <property type="term" value="F:4-hydroxy-tetrahydrodipicolinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00950">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00418">
        <property type="entry name" value="DapA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005263">
        <property type="entry name" value="DapA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002220">
        <property type="entry name" value="DapA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020624">
        <property type="entry name" value="Schiff_base-form_aldolases_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12128">
        <property type="entry name" value="PTHR12128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00701">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001365">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00146">
        <property type="entry name" value="DHPICSNTHASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01130">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00674">
        <property type="entry name" value="dapA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00665">
        <property type="entry name" value="DHDPS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="8 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="7 8" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0704">Schiff base</keyword>
    <feature type="active site" description="Proton donor/acceptor" evidence="8">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="8">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="204"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <feature type="site" description="Part of a proton relay during catalysis" evidence="8">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <feature type="site" description="Part of a proton relay during catalysis" evidence="8">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR001365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC48924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="295" mass="30736" checksum="D77E749B9ACE6574" modified="2016-01-20" version="1">MTSAPFGTVLTAMVTPFHEDGSVDLDGVQKVAKHLVDNGNDGIVVSGTTGESPTTTGAEDGETLAAVKDAVGDRAKIVAGVGTNDTRHSVELARQAEKVGADGLLLVTPYYNKPSQPGVLQHFRQVVEATSVPVMLYDVPGRTGTKIALETYRAMTDWETVTTVKEATGDLARTAQLVDLGYTVYSGDDVNTLGYLAYGATGVVSVVGHVAGVQLHAMIDAFLAGDHAEALRIHTSLVPAFEAIMGVPNYGATTAKAALELLGVLPNRIVRSPLLQLDDTEVADLRAGLAAAGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV84</accession>
    <name>A0A0Q8UV84_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">Octanoyltransferase</fullName>
            <ecNumber evidence="6 7">2.3.1.181</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Lipoate-protein ligase B</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Lipoyl/octanoyl transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lipB</name>
        <name evidence="12" type="ORF">ASE19_18560</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6 7">Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6 7">
            <text>L-lysyl-[protein] + octanoyl-[ACP] = H(+) + holo-[ACP] + N(6)-octanoyl-L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:17665"/>
            <dbReference type="Rhea" id="RHEA-COMP:9636"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:9928"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78463"/>
            <dbReference type="ChEBI" id="CHEBI:78809"/>
            <dbReference type="EC" id="2.3.1.181"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 6 7">Protein modification; protein lipoylation via endogenous pathway; protein N(6)-(lipoyl)lysine from octanoyl-[acyl-carrier-protein]: step 1/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="6">In the reaction, the free carboxyl group of octanoic acid is attached via an amide linkage to the epsilon-amino group of a specific lysine residue of lipoyl domains of lipoate-dependent enzymes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the LipB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.181" evidence="6 7"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49114">
        <property type="protein sequence ID" value="KRC49114"/>
        <property type="gene ID" value="ASE19_18560"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00538">
        <property type="reaction ID" value="UER00592"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033819">
        <property type="term" value="F:lipoyl(octanoyl) transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009249">
        <property type="term" value="P:protein lipoylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16444">
        <property type="entry name" value="LipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00013">
        <property type="entry name" value="LipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004143">
        <property type="entry name" value="BPL_LPL_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000544">
        <property type="entry name" value="Octanoyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020605">
        <property type="entry name" value="Octanoyltransferase_CS"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016262">
        <property type="entry name" value="LPLase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00214">
        <property type="entry name" value="lipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51733">
        <property type="entry name" value="BPL_LPL_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01313">
        <property type="entry name" value="LIPB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6 7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="BPL/LPL catalytic" evidence="11">
        <location>
            <begin position="17"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6 9">
        <location>
            <begin position="57"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6 9">
        <location>
            <begin position="129"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6 9">
        <location>
            <begin position="142"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="6 8">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <feature type="site" description="Lowers pKa of active site Cys" evidence="6 10">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR016262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR016262-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR016262-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR016262-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC49114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="24938" checksum="136396ABBACE9A1A" modified="2016-01-20" version="1">MAAWELQREVHEQVVAGTLSPTVLLLEHPPVFTAGKRTRPEDRPADPGGAPVIDVDRGGQITFHGPGQLVGYPIVRLPDHVKVVDYVRRVEEALIAVCAEFGIATARVPGRSGVWLKADERGPERKIAAIGIRVSKGVTMHGFSLNCDVDMGWYDRFVPCGISDAGVTSLSAELGRDVPVTAVLDAVRRHFAHYLAWGSYEATPDYEPRPDPAKAAGSATPGGVAVLTYPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV95</accession>
    <name>A0A0Q8UV95_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Transcription antitermination protein NusB</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Antitermination factor NusB</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nusB</name>
        <name evidence="8" type="ORF">ASE19_19260</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the NusB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893430.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49028">
        <property type="protein sequence ID" value="KRC49028"/>
        <property type="gene ID" value="ASE19_19260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1574817at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031564">
        <property type="term" value="P:transcription antitermination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.940.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00073">
        <property type="entry name" value="NusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035926">
        <property type="entry name" value="NusB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011605">
        <property type="entry name" value="NusB_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006027">
        <property type="entry name" value="NusB_RsmB_TIM44"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11078">
        <property type="entry name" value="PTHR11078"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01029">
        <property type="entry name" value="NusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48013">
        <property type="entry name" value="SSF48013"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01951">
        <property type="entry name" value="nusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 6" id="KW-0889">Transcription antitermination</keyword>
    <keyword evidence="4 6" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="NusB" evidence="7">
        <location>
            <begin position="6"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC49028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="135" mass="14832" checksum="74620F093B7DCC11" modified="2016-01-20" version="1">MGARTKARKRALDVLYAADMRGETGVEALARVIAEGEPPSNPYTRTLVEGVTERRERIDEVLSEFSTGWSLARMPAVDRNVLRIGVWEMLWVDDVPDTVAVTEAMALVQELSTDESPAFVNGVLGAIQRSKSTLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVL8</accession>
    <name>A0A0Q8UVL8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MerR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19405</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893457.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49055">
        <property type="protein sequence ID" value="KRC49055"/>
        <property type="gene ID" value="ASE19_19405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1748559at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00552">
        <property type="entry name" value="HTH_MERR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="116" mass="12740" checksum="F3DCA5649821D37A" modified="2016-01-20" version="1">MKIGELAERTGVAARLIRYYEQQGLLAADRLPNGYRTYGEPHVEQVSRVAGLIQSGIPTRLVRALLEAEAACATDATTCSRELADLLAAELDGLEQRIACLTRSRDTIQQVLARTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWT9</accession>
    <name>A0A0Q8UWT9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PALP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_20835</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896060.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46289">
        <property type="protein sequence ID" value="KRC46289"/>
        <property type="gene ID" value="ASE19_20835"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901607">
        <property type="term" value="P:alpha-amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="3">
        <location>
            <begin position="24"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="334" mass="33566" checksum="1A680B53AC708373" modified="2016-01-20" version="1">MADTTTDPTFAEVLRAAEVVAASLAPTPLQSHPLLDAATGSAVLVKHEHVLPTGSFKVRGGVHLAATLTEAEQQHGLVTCSTGNHAQSVAYGARLAGVRATIVMPSSAPAVKRDAVAALGAEVVVRGATLGESAAAARALAAETGGSFICPTDRRIVLGHATAYLELFRQAAEQGVTLAALYVPIGSGTGAAGACLVRDELSPATRVVGVQSEAAPAGWRSWRHGAIETAPSQTRASGLATTTGYPLTQRILQGRLDDFVLVSDDAIDDAARLLATRAHTLAEGAGAAALAGLLTPQGPGRPGRSADGPVAVVCTGANASADEIARLGATSSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXS8</accession>
    <name>A0A0Q8UXS8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">23S rRNA methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_21595</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896406.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46637">
        <property type="protein sequence ID" value="KRC46637"/>
        <property type="gene ID" value="ASE19_21595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1421660at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030390">
        <property type="entry name" value="MeTrfase_TrmA_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010280">
        <property type="entry name" value="U5_MeTrfase_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11061">
        <property type="entry name" value="PTHR11061"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05958">
        <property type="entry name" value="tRNA_U5-meth_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51687">
        <property type="entry name" value="SAM_MT_RNA_M5U"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01230">
        <property type="entry name" value="TRMA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="6">
        <location>
            <begin position="248"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="347"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="347"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="320"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="395" mass="42350" checksum="883D615E17E4C61E" modified="2016-01-20" version="1">MSLAVLDCAHFTAGECRSCTWLGRRYDDQLAAKQAATRALVDASGMVWEPPVTSAPEGFRNKAKMVVGGTAQEPTLGILDPSGKGVDLRDCALHTPGIVAALPVLADFVRRAGLTPYDVAGTAPVAQRGELKHVLVTESPDGELMVRLVLRSTAAEARVRKHLPWLQAELPAVRVLTINVQPDHRAVLEGERELVLTEHDSLPMRLGGESGIVLHLRPRSFFQTNTEVAAALYREAVAWTADLGAERVVDLYCGVGGFALHLAAPGRTVTGIEISADAIGSAERSRDEAGLPGEIAFTVGDATAAEHQALIRYADLVVVNPPRRGLGAELVQRLEESGAAHLLYSSCNPETLARDLAGLASYRPVRGRVLDMFPQTPHAEVLVLLERRAGAQRSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY58</accession>
    <name>A0A0Q8UY58_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">UvrABC system protein A</fullName>
            <shortName evidence="13">UvrA protein</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Excinuclease ABC subunit A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">uvrA</name>
        <name evidence="17" type="ORF">ASE19_15815</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <reference evidence="17 18" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Forms a heterotetramer with UvrB during the search for lesions.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="13">Belongs to the ABC transporter superfamily. UvrA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893552.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50084">
        <property type="protein sequence ID" value="KRC50084"/>
        <property type="gene ID" value="ASE19_15815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="152379at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009380">
        <property type="term" value="C:excinuclease repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009381">
        <property type="term" value="F:excinuclease ABC activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00205">
        <property type="entry name" value="UvrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004602">
        <property type="entry name" value="UvrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041552">
        <property type="entry name" value="UvrA_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041102">
        <property type="entry name" value="UvrA_inter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17755">
        <property type="entry name" value="UvrA_DNA-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17760">
        <property type="entry name" value="UvrA_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00630">
        <property type="entry name" value="uvra"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 13 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 13" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 13" id="KW-0228">DNA excision</keyword>
    <keyword evidence="12 13" id="KW-0234">DNA repair</keyword>
    <keyword evidence="11 13" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10 13" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="2 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 13 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 13" id="KW-0677">Repeat</keyword>
    <keyword evidence="13" id="KW-0742">SOS response</keyword>
    <keyword evidence="8 13" id="KW-0862">Zinc</keyword>
    <keyword evidence="7 13" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="ABC transporter" evidence="16">
        <location>
            <begin position="610"/>
            <end position="942"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="13">
        <location>
            <begin position="745"/>
            <end position="771"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="947"/>
            <end position="995"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="15">
        <location>
            <begin position="971"/>
            <end position="995"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="32"/>
            <end position="39"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13 14">
        <location>
            <begin position="646"/>
            <end position="653"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KRC50084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="995" mass="109323" checksum="88CD508A53CBF3CC" modified="2016-01-20" version="1">MQDQLIIRGAREHNLKDVSIDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQMDKPDVDFIEGLSPAVSIDQKSTSKNPRSTVGTITEVYDYLRLLYARAGRPHCPTCGAPIERQTPQQIVDRMMALEEGTRFQVLAPVVRGRKGEFVELFRQLQSQGFSRARVDGETHNLDSPPTLDKKYKHSIDVVVDRLAVKETAKRRLTDSVETALGLAGGLVVFDMVATGEELKFSEKMACPNEHAIETDDLEPRSFSFNSPFGACPSCTGLGTRMEVDPELVVPDPTATLAEGALQPWSHAHVADYFGRLLIALGEELGFDVDTPWEQLPARAQKSILEGHSTKVHVVTRNRYGRERSYYADFEGVRKYVERRHREAESDTSRERFEGFMREVPCPVCAGSRLKPVSMSVTLGAREHGGKNIAEVCALPINEAAAYLADLDLSARERQIGERVLKEIQERLNFLLDVGLDYLSLDRPSGSLSGGEAQRIRLATQIGAGLVGVLYVLDEPSIGLHQRDNQKLIETLVRLKDLGNTLIVVEHDEDTIRVADWVVDIGPGAGEHGGQVVHSGTVEDLLTHRDSMTGQYLSQRREIPVPAVRRPRTVGRELKVIGAKEHNLRNVDVSFPLGVFCAVTGVSGSGKSTLVNDILYTSLAKQIYNARTIPGRHQKITGLEHVDKVIHVDQSPIGRTPRSNPATYTGVFDHVRKLFAQTPEAKMRGYQQGRFSFNVKGGRCEACAGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKTIAEILDMPIEEALEFFAAVPAIARHMKTLVEVGLGYVRLGQPATTLSGGEAQRVKLAAELQKRSTGRTVYVLDEPTTGLHFEDIRKLLGVLSSLVDKGNTVLVIEHNLDVIKTADWLIDMGPEGGSRGGTVVAEGTPEDVVAVSESYTGQFLKPLLEGRSVKQPGAPKRAPKEAVPAKKAVARKAPAKKATTRKAPAKKATTARKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY88</accession>
    <name>A0A0Q8UY88_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase</fullName>
            <shortName evidence="8">L-Cys:GlcN-Ins ligase</shortName>
            <ecNumber evidence="8">6.3.1.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Mycothiol ligase</fullName>
            <shortName evidence="8">MSH ligase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">mshC</name>
        <name evidence="10" type="ORF">ASE19_16660</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 8">Catalyzes the ATP-dependent condensation of GlcN-Ins and L-cysteine to form L-Cys-GlcN-Ins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside + ATP + L-cysteine = 1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranoside + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:26176"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:58886"/>
            <dbReference type="ChEBI" id="CHEBI:58887"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.1.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="8">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 8">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.1.13" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893701.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50232">
        <property type="protein sequence ID" value="KRC50232"/>
        <property type="gene ID" value="ASE19_16660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="952207at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035446">
        <property type="term" value="F:cysteine-glucosaminylinositol ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010125">
        <property type="term" value="P:mycothiol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00672">
        <property type="entry name" value="CysRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01697">
        <property type="entry name" value="MshC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024909">
        <property type="entry name" value="Cys-tRNA/MSH_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017812">
        <property type="entry name" value="Mycothiol_ligase_MshC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032678">
        <property type="entry name" value="tRNA-synt_1_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10890">
        <property type="entry name" value="PTHR10890"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01406">
        <property type="entry name" value="tRNA-synt_1e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00983">
        <property type="entry name" value="TRNASYNTHCYS"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03447">
        <property type="entry name" value="mycothiol_MshC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 8 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="tRNA-synt_1e" evidence="9">
        <location>
            <begin position="35"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="region of interest" description="Cysteinyl adenylate binding" evidence="8">
        <location>
            <begin position="43"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="region of interest" description="Cysteinyl adenylate binding" evidence="8">
        <location>
            <begin position="81"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="Cysteinyl adenylate binding" evidence="8">
        <location>
            <begin position="245"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="8">
        <location>
            <begin position="45"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'ERGGDP' region" evidence="8">
        <location>
            <begin position="183"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="8">
        <location>
            <begin position="284"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>L-cysteinyl-5'-AMP</name>
            <dbReference type="ChEBI" id="CHEBI:144924"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>L-cysteinyl-5'-AMP</name>
            <dbReference type="ChEBI" id="CHEBI:144924"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="227"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="278"/>
        </location>
        <ligand>
            <name>L-cysteinyl-5'-AMP</name>
            <dbReference type="ChEBI" id="CHEBI:144924"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC50232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="411" mass="44418" checksum="F44A37CDF0134143" modified="2016-01-20" version="1">MRAWNAPGIPVLPVTGPPVVLHDTATGGPVETTPDGAARLYVCGITPYDATHIGHANTYVAFDLLNRAWRAAGHDVRFVQNVTDVDDPLLERATKVGVDWVELAERETELFRKDMEALRVLPPAAYIGAVESIPLVIELITRLEEAGAIYRVEDDLYFSVSADAAFGEESGYDRDTMLRFFGERGGDPDRAGKKDPLDCVVWRGEREGEPSWDSPWGKGRPGWHIECAAIALQELGGRFDVQGGGSDLVFPHHEMCAGHVQVATGEPFAQVYSHAGMVAYDGEKMSKSLGNLVFVSALRNSDIDPMAIRLTLLRHHYRTDWEWTDDQLWTAVDDLATWRRAVALGAGAPAAPVVEEILAALADDLDAPRATAAIDGWVAATLGTDGLADTSDADAAVTLLPVLDAALGLTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYG5</accession>
    <name>A0A0Q8UYG5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_17410</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893118.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48713">
        <property type="protein sequence ID" value="KRC48713"/>
        <property type="gene ID" value="ASE19_17410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="781648at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003410">
        <property type="entry name" value="HYR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02494">
        <property type="entry name" value="HYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359532" description="VWFA domain-containing protein" evidence="3">
        <location>
            <begin position="31"/>
            <end position="535"/>
        </location>
    </feature>
    <feature type="domain" description="VWFA" evidence="4">
        <location>
            <begin position="67"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="423"/>
            <end position="445"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="535" mass="54345" checksum="D1390149E63CABB7" modified="2016-01-20" version="1">MRVPPPSARGRVVPVGLLSLALSAAATVAATGSPGVSPQHYTDELPPGGSVTITKTVETPPIPPNPDIVFLADTTTSMNPSISNVQSNATSIVSQILAAQPTAQFAVADYKDTDDPSHFILRQQLTGNTADVIDGIGHWTPTSGGGSDAAEDWIGALGAVPTTIDFRDNGSPIVVMFGDSSSHDPSAGYSLGSATAALEAAGVRVIAIAVPSTDEYLWDGLDSEGQASYVTSHTGGTLTNANPDQVSNVILSQLQNLPAEVTHDVSCDAGVSASLTATSPTTVTSGGTVTYDETITLTGDAPQGDTVSCTVSFKVNGEVPGPEFVQTVDIAVEDVTPPVVTVESKTVEATSPAGAVVSYDASAVDNVDGPLTPTCVPPSGSQFPLGVTPVDCEATDAAGNTGHGAGTIEVVDTTPPVVACPESTNPGGSVPKAGGTRPNPQGQNQDGFYRLDATDVVDTDPDVYLRDAGSGHVWGPFASGQRIKYTQAKSGPREQALGDSDILHLTGTGDAELYAADFSGNVSAPVACRVPAPPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYH5</accession>
    <name>A0A0Q8UYH5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17095</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50309">
        <property type="protein sequence ID" value="KRC50309"/>
        <property type="gene ID" value="ASE19_17095"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="91" mass="10039" checksum="1E63ABDC2C862A14" modified="2016-01-20" version="1">MRKHRTWRDDLDRVLLLLGCLALAVLVVFVVIAVVSSIGGKDAGDTCTELEAWYEENPGDSNVSIAKDYYRLCDDLPPPVINGELSMDDVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYJ1</accession>
    <name>A0A0Q8UYJ1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_17190</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RsuA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893794.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50325">
        <property type="protein sequence ID" value="KRC50325"/>
        <property type="gene ID" value="ASE19_17190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1037615at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042092">
        <property type="entry name" value="PsdUridine_s_RsuA/RluB/E/F_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000748">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB/E/F"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018496">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020094">
        <property type="entry name" value="TruA/RsuA/RluB/E/F_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00093">
        <property type="entry name" value="TIGR00093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01149">
        <property type="entry name" value="PSI_RSU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="4">
        <location>
            <begin position="13"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008348"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="250" mass="27587" checksum="C875C3AD63B26499" modified="2016-01-20" version="1">MTREIAVDEDGQIRLQKLLAQSGVASRRRCEELMLEGEVEVDGEVVTRLGTKVDPRTAVIKVSGKRLPPVSDHVYLVLNKPRGVVSTMSDPEGRRTLSDFVGDRPERLFHVGRLDTDTSGLLLLTNDGDFAHRMAHPSFEVEKTYVAEVAGRLAKGTVADLLAGVTLDDGPVEVRRARVIDTRAEKSIIELVIHEGRNRIVRRLLEEVGHPVRQLSRTKFGPIELGTLGGGKLRELSHDELGQLLELVGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYN7</accession>
    <name>A0A0Q8UYN7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Sec-independent protein translocase protein TatC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">tatC</name>
        <name evidence="6" type="ORF">ASE19_16530</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">The Tat system comprises two distinct complexes: a TatABC complex, containing multiple copies of TatA, TatB and TatC subunits, and a separate TatA complex, containing only TatA subunits. Substrates initially bind to the TatABC complex, which probably triggers association of the separate TatA complex to form the active translocon.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the TatC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893676.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50207">
        <property type="protein sequence ID" value="KRC50207"/>
        <property type="gene ID" value="ASE19_16530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1848013at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033281">
        <property type="term" value="C:TAT protein transport complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008320">
        <property type="term" value="F:protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043953">
        <property type="term" value="P:protein transport by the Tat complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00902">
        <property type="entry name" value="TatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002033">
        <property type="entry name" value="TatC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30371">
        <property type="entry name" value="PTHR30371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00902">
        <property type="entry name" value="TatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01840">
        <property type="entry name" value="TATCFAMILY"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00945">
        <property type="entry name" value="tatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0811">Translocation</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="37"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="91"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="129"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="177"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="210"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="234"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="278" mass="30288" checksum="4F3D1C4D7091B97F" modified="2016-01-20" version="1">MAFTGLLKLFVGSPVHAVGDDGRMALSDHLRELRARILKATFAVVVGFVIALFFFEPIFEIVNDPYQQARQALGEDRTVATTNGAAGGFLLYLKLCGLAALVGTSPIWLYQIWAFILPGLHSQEKKWTAIFAVIAGPLFLFGIALGYLTLPKGLEILIGFTPGDLTNLVEFNDYLTFFSRTLLGFGIAFEIPVFVVLLNMAGVLKGKTLGAHRPWMIIGTFVFAAVITPSGDPFTMSFMAVPMVILFLISEVIARGNDRRRAKKGVNAGLSPDELSEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYU5</accession>
    <name>A0A0Q8UYU5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21015</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896093.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46322">
        <property type="protein sequence ID" value="KRC46322"/>
        <property type="gene ID" value="ASE19_21015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1069752at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="15"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="175" mass="17932" checksum="FF812A39F5BBB1C9" modified="2016-01-20" version="1">MARATGAGADVGARIRALREARGLSLSGLASQAGIGKGTLSELETGQRNPTLDTLYAVATPLGVPMAALMDDRDGAVIAGDGILATRVRVVREPGRTTEAYLLRLAPGAERRSGAHVAGVEEQLVVLSGTGEVEHGGGVDAFGPGDHVRFAADRPHAYRGGPEGFEAVNVIVTPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYX0</accession>
    <name>A0A0Q8UYX0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16970</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893756.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50287">
        <property type="protein sequence ID" value="KRC50287"/>
        <property type="gene ID" value="ASE19_16970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="275" mass="29860" checksum="088BD8E07D5D23D3" modified="2016-01-20" version="1">MSAPVVDYRVDGPVATITMNRPAYRNAQNSAMTYALDDAFTRAVDDDAVTVIVLAGAGDHFSAGHDIGTPERDADQTFERRAVIWWDHVGRQGVDSRLARESEVYLGMCRRWREVPKPTIAMVQGACIAGGLMLAWSCDFVVASDDAFFSDPVVRMGIPGVEYFAHAWQMNPRAAKELLFTGDRWSADRAHQLGMVNHVVPRAELVSFTHALAGRISAMPPLGLALAKKAVNQAEELQGLRAGIDSVFGLHHAAHAHNAEVAGDALAGLDARTMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0Q0</accession>
    <name>A0A0Q8V0Q0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18955</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893381.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48979">
        <property type="protein sequence ID" value="KRC48979"/>
        <property type="gene ID" value="ASE19_18955"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359588" evidence="2">
        <location>
            <begin position="18"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="111" mass="11259" checksum="C6117B038B8B5CAD" modified="2016-01-20" version="1">MRSLTLATVVPLALALAACGSDEPSGDAAPTDARTSASSLPGRMVEHADASGCEAERTTVETAAEAYFASNGAYPADLAALEGDFLADVSTLVYVIGIEDGVPLLRDDAPC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0X2</accession>
    <name>A0A0Q8V0X2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_22005</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46647">
        <property type="protein sequence ID" value="KRC46647"/>
        <property type="gene ID" value="ASE19_22005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014325">
        <property type="entry name" value="RNA_pol_sigma-E_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02983">
        <property type="entry name" value="SigE-fam_strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="18"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="100"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="167" mass="18761" checksum="496D281618F3CCE7" modified="2016-01-20" version="1">MGRGVPSFEEYVAARSAALWRSAWLLTGDRHRAEDLVQTALMKCWRRWDRIDDPGAVEAYVRRTMVTTYTDWWRRRWNGEQPTDEVPEVAATSPDPGVRRDVLVALAALPRGQRAVVVLRYFDDLTEAQAATALGISVGTVKSQAARALRTLRTSGLLDDHQEGSHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2R8</accession>
    <name>A0A0Q8V2R8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Fe-S cluster assembly protein HesB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16760</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893718.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50249">
        <property type="protein sequence ID" value="KRC50249"/>
        <property type="gene ID" value="ASE19_16760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1891602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.300.12">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035903">
        <property type="entry name" value="HesB-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89360">
        <property type="entry name" value="SSF89360"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="91" mass="9353" checksum="9BF1B87B40069C03" modified="2016-01-20" version="1">MLTLTENAATIVKQMTDTPDAAESAGLRISEAEAGFAVTATDQPLAGDQVVEQDGATVYLDDSAAEKLDAMVLDAGFDDTGAVQFGLMAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V374</accession>
    <name>A0A0Q8V374_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_19240</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49024">
        <property type="protein sequence ID" value="KRC49024"/>
        <property type="gene ID" value="ASE19_19240"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="42"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="125"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC49024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="189" mass="20683" checksum="8FBD15D139E6674B" modified="2016-01-20" version="1">MEDELIARARDGDPDAWRELYESLTGRLLVWLRARPSGDVLAAPDDLVAETWLVAARSIADFEGDRDAFAGWLFGIARNNARAARRRTSRRATSPVEPADLGNVVPLRRHLAAPGTAEHVTGADWARRVLAELPEREREVLTCTEVAGLSNQQTAVALGISATAVRVARHRGLTRLRRTLPAPGLTAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4E2</accession>
    <name>A0A0Q8V4E2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19050</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893395.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48993">
        <property type="protein sequence ID" value="KRC48993"/>
        <property type="gene ID" value="ASE19_19050"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006465">
        <property type="term" value="P:signal peptide processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001733">
        <property type="entry name" value="Peptidase_S26B"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02228">
        <property type="entry name" value="sigpep_I_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="129"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="176"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="444" mass="44602" checksum="0323F3A15182CFF7" modified="2016-01-20" version="1">MTRLARWAREAVLWTGSVLGALCLASFVAGWLFHVTPLVFVSGSMSPDYEAGALGIAHQVPASDIAVGDVVSVVNAGGDRVTHRVVGAAPSGDLVGLTLRGDTNDTPDAETYYVGAADRVVLGLPYAGYALAAATTPVGLLAAGLLVLAALALGFSRRDGDGPSRTGKGTRVLAPAGLASVLALGGVLGLGGGAPWAFTSAVWTDSATATATITTPDTTPPVLSNPLPANAASGTAWTTMSCSSSANQVCVTATDTSGSGVSTVFVKLVRTSGTTQCWDGSAFVNGTACAAQPMTLVSGNQYRSSGLTSALMVNGTYQTTYTASDVAGNSATPLVTSFTVAVPAPAKPTITACVNTANGSAPYRLTWTWPGPGNPDSFAVVYSVNPGGTRVTTFAGNLRTGDTVDINNEAGNFKLVAVVGGVQSVVSNQANYQGNGGGKTCNVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V589</accession>
    <name>A0A0Q8V589_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18375</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893283.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48882">
        <property type="protein sequence ID" value="KRC48882"/>
        <property type="gene ID" value="ASE19_18375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047542at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="10"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="204" mass="21717" checksum="2C9C8BA1A2565EB3" modified="2016-01-20" version="1">MTRYSPEHKEATRRRMIETAGRRFKSDGIDGSGIATLVADAGLTNGAFYGHFSSKDDLVASVVTQQLEDQVAVVDSLPAGLASVEQYLRYYLSPAHRDDLAGGCPSAALLDEIGRCDVAVREAYTAGATAMIQAIARHLDNGDPEQTEQRAIGLFSLLVGSLQVARAVTDPDLSDRVLAAAYTNAVALATAPHPPAHANRQEPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5N0</accession>
    <name>A0A0Q8V5N0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Histidine kinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09360</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894573.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52635">
        <property type="protein sequence ID" value="KRC52635"/>
        <property type="gene ID" value="ASE19_09360"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13581">
        <property type="entry name" value="HATPase_c_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Histidine kinase" evidence="1">
        <location>
            <begin position="438"/>
            <end position="521"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="521" mass="56018" checksum="F0BB109AD64884CB" modified="2016-01-20" version="1">MDLELPPEARALLDAMVAIGSDLDLRGVLSRIVEASCRLTDAEYGVLGIVDDDGQFTDLVPNDAVADQFDKIGMMPKGHGLLGLVPRERRAIRVDHVATHPESLGEFPHAHPMIDRFLGAPVMVGDEAFGHLYLGNKRGGAEFTATDQALVEALARAAGVMIDNARTFEQVEWRRRWVASTAEVGSDVSGTLRVQEALDELAVSLRDLCGARLVTYVRRDGDLMEIRQVAGEGDAAEAVERLADQIREVDATRAPVRLPVGPGSATLVVPVHTRLAGSGVIIVDQAHETPSLRGIMLDLVAVTAVQVGLILDRDQALRDRAQLLVAKDRDRIARDLHDLVIQRLFATGMQLQGARGLDVAELRTRVDGAITELDVAIKELRAAIFELGTGAGRPLLDEVRSLLGEYAVLLGFQPVLRVSGPVDRALVPEAGTHVLMTLREALSNVMRHADATSVSVELTASSAWFRVRVTDDGRGFDPKQRSKGQGTGNLRARAADLGGHVTVTSAPGEGTTLEWVIPAVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5P3</accession>
    <name>A0A0Q8V5P3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_09845</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894654.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52718">
        <property type="protein sequence ID" value="KRC52718"/>
        <property type="gene ID" value="ASE19_09845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1846131at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005538">
        <property type="entry name" value="LrgA/CidA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33931">
        <property type="entry name" value="PTHR33931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03788">
        <property type="entry name" value="LrgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="25"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="62"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="85"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="130" mass="13820" checksum="F776F6F63ECE0DC7" modified="2016-01-20" version="1">MIAGLTWLVGFQLLGELVVRVTDVSVPGPVAGMMFLFVYLRLRRYDDAGSIVQAGTALLRHLQLFFVPAGVGVVAYLSVLGHDALPIGVAMVGSWLLGLVAVGWTAVGLERLLGRPRDDLPGHLPETGTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V629</accession>
    <name>A0A0Q8V629_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Geranylgeranyl pyrophosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09990</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the FPP/GGPP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52742">
        <property type="protein sequence ID" value="KRC52742"/>
        <property type="gene ID" value="ASE19_09990"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00685">
        <property type="entry name" value="Trans_IPPS_HT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000092">
        <property type="entry name" value="Polyprenyl_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033749">
        <property type="entry name" value="Polyprenyl_synt_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00348">
        <property type="entry name" value="polyprenyl_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="SSF48576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00444">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="340" mass="35960" checksum="0CECC4479AE6DDA2" modified="2016-01-20" version="1">MTAAPSPAELALPILDDALAERLRVRMATVEEALYGHASSRAAYVTEAARHLLAAGGKRFRPLLVLLAAEAGPRPDADEVLTAACVVEITHVGSLYHDDVMDEADLRRGEDSANARYDNLVAILTGDWLFAKSSELTAQLGPEAVRIQAETFTRLVEGQILETVKPGPDEDALAHYLEVVAGKTGSLIATSAHYGALFSGAAPEVVAALTAYGELVGTAFQLSDDILDVASESEESGKTPGTDLKEGVPTLPVLIARASTDPADARLLELLDPERTDLAADADLHAEALDLLRKHPAMGQAQDYVVARAQEAKKLLEVLPEGSVRTALEAFADVVAVRSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V678</accession>
    <name>A0A0Q8V678_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Citrate synthase (unknown stereospecificity)</fullName>
            <ecNumber evidence="3">2.3.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_09560</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Carbohydrate metabolism; tricarboxylic acid cycle.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the citrate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.16" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894609.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52671">
        <property type="protein sequence ID" value="KRC52671"/>
        <property type="gene ID" value="ASE19_09560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1412360at2"/>
    <dbReference type="UniPathway" id="UPA00223"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036440">
        <property type="term" value="F:citrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016142">
        <property type="entry name" value="Citrate_synth-like_lrg_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016143">
        <property type="entry name" value="Citrate_synth-like_sm_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002020">
        <property type="entry name" value="Citrate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019810">
        <property type="entry name" value="Citrate_synthase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036969">
        <property type="entry name" value="Citrate_synthase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11739">
        <property type="entry name" value="PTHR11739"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00285">
        <property type="entry name" value="Citrate_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00143">
        <property type="entry name" value="CITRTSNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48256">
        <property type="entry name" value="SSF48256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00480">
        <property type="entry name" value="CITRATE_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="367" mass="39909" checksum="A5691147291D4C40" modified="2016-01-20" version="1">MVEVHHGLEGVVAFETQIAEPDKEGSALRYRGVDIEDLAGRVPFENVWGLLIDGSFTPGLPPAEAFSLPVHTGDVRVDVQAAIAMLAPAFGFGQTYDITDEQAREDLARVAVMVLSYAGQSARDLHLPVVPQRLVDEGRTLAEKFLIRWRGEADPKHAHAIDAYWSSAAEHGMNASTFTARVITSTGADVAAAFSGAIGAMSGPLHGGAPSRVLGMIEEVEKSGDARAYVKGLLDSGERLMGFGHRVYRAEDPRARVLRRTAKELGAARYEVAEALEQAALTELRERRPDRVLETNVEFWAAIVLDFAEVPANMFTSMFTCARTGGWSAHILEQKRTGRLIRPSAVYTGPSTRPASDIEGWNDAWAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6B2</accession>
    <name>A0A0Q8V6B2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">LytR_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11125</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894882.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52949">
        <property type="protein sequence ID" value="KRC52949"/>
        <property type="gene ID" value="ASE19_11125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1910936at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027381">
        <property type="entry name" value="LytR/CpsA/Psr_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13399">
        <property type="entry name" value="LytR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="LytR_C" evidence="2">
        <location>
            <begin position="62"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="178" mass="18269" checksum="06EFCF4CFE9ECAC4" modified="2016-01-20" version="1">MDGLDVRDGSRSAMTLAVLAVVFLAGVAWAWSRVTEPFPEKVEAAPCTETLISAGDDVAPPQVMVTVLNAGGANGLAGKTMDKLVGFGFGAGKTGNAPTNTGPVSAQVWADDPDDPAAVLLASYLGRGVEIVDQPSGYPGMTIVVGKRFNGVRKGHPTVTAKKDAYVCTPPLSSNPDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6C1</accession>
    <name>A0A0Q8V6C1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF5667 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_10260</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52792">
        <property type="protein sequence ID" value="KRC52792"/>
        <property type="gene ID" value="ASE19_10260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1505856at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043725">
        <property type="entry name" value="DUF5667"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18915">
        <property type="entry name" value="DUF5667"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="90"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5667" evidence="3">
        <location>
            <begin position="113"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="280"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF18915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="363" mass="38004" checksum="654D073A35DB1783" modified="2016-01-20" version="1">MMRGNGWARGAEEFDALVSGRADDAGTHAELLELVAALRSVEPAPARPEFVASLRTQLVAAAQREPARVESDLAARLTPRQRRGSRERRIAALVGGFAVVSATGSMAMAAQDAPPGDVLYPVKRAIENAQTNLQSDGGSKADSLLSHAQSRLQEVQELTAKDADADVIASTLQDFTDQTKQASELALDDYSVTGKADQITELREFAAQSMGVLDTLGGIIPDEVRAPLITATQTVHQVDVAAWELCPSCDGGDITQLPDYAIEQVKALLNGPVLDQAAATEVPQAKPSDKPTKAAVDPSDAPTDASDAPSENPIKEAVDGITKILPVKPTDKPTTDTTKDTTVTGALVDGVSGLLNGLGGLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6D0</accession>
    <name>A0A0Q8V6D0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11090</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894875.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52942">
        <property type="protein sequence ID" value="KRC52942"/>
        <property type="gene ID" value="ASE19_11090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1989068at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="165" mass="18228" checksum="53FFD433235CA601" modified="2016-01-20" version="1">MSTQPTYDQLVTLPAYAVQPVPNAFEDSNGFLNVRHYLGIGSEGLDESLHQIGIPFNWPMISGFACLSAEHHLTYQHELKTGDEMSVRVRILGRSDRAAHAVVYVLDDTNQRVACVFEEIFLCVQIADRRTAPWPADIAAGLDRLVAEHAAIGWEPVLSGSLALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6K2</accession>
    <name>A0A0Q8V6K2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10875</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894834.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52902">
        <property type="protein sequence ID" value="KRC52902"/>
        <property type="gene ID" value="ASE19_10875"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="72"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="170" mass="18410" checksum="20A44EF4B3848FC3" modified="2016-01-20" version="1">MTYANETGGTGDEPTGAVTVTVDATDRVRQVEVRERDSVHDPAALAAAVEHAYRAAVMDRLEALYPDRGLDPDRRIAGLDGHPPIRTVENRQGQHVARPRAPRSTALLERRFSPTEGISANECVTVTLALASSWGPVVADPGWLANARPSNVGDAITQAFADAYRKRDER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6L5</accession>
    <name>A0A0Q8V6L5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11560</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894952.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53022">
        <property type="protein sequence ID" value="KRC53022"/>
        <property type="gene ID" value="ASE19_11560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2045799at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="148" mass="16158" checksum="4AA6B592BE06823B" modified="2016-01-20" version="1">MEISSVGDGFADVRLARAEVLAIRNISERAGMVPFELRGPHEIFERLASHFGALAESLARSSLVTGRSTYVEPGQATSRDEFGEFVLGVLADFDESGDIEWENNTLGRFLDGLSAFALARVNGRSDDDQEQPSWKLFAELIAAATGYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6N2</accession>
    <name>A0A0Q8V6N2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11355</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894916.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52986">
        <property type="protein sequence ID" value="KRC52986"/>
        <property type="gene ID" value="ASE19_11355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2146658at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359747" evidence="1">
        <location>
            <begin position="34"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="213" mass="21810" checksum="0F6DD3B4946DB2CC" modified="2016-01-20" version="1">MSDSSRRRTGLSPFAVAAVAVGMLAVGTGGAVAGGLITGAKIKDGTVTGADIRNNSLTAADLLDESRAWGKTSTTPKGPFTATEWTPIVSRAVSVPRAGYLQVTGDLYAEDLASGAGLGSLFYTIKVDGKIINTGDYRRLQYGSENSENHGENGSATVTVKVAKGSHTISLVAKETGAGSYTYGGSINALYAPTGSAAVTYVLPRSTARTANR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V704</accession>
    <name>A0A0Q8V704_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Amine oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12720</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895684.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53221">
        <property type="protein sequence ID" value="KRC53221"/>
        <property type="gene ID" value="ASE19_12720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1442136at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001613">
        <property type="entry name" value="Flavin_amine_oxidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00757">
        <property type="entry name" value="AMINEOXDASEF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="3">
        <location>
            <begin position="56"/>
            <end position="497"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="500" mass="53879" checksum="0B256D721A1A7205" modified="2016-01-20" version="1">MLSSEALTLGRRGLFAGGAVAVGALATEALEAEVTAATLRGPLPRKVDVVVVGGGIAGLVTAERIARRGRSVLVVEARTRVGGRVLNHTLRTGGTIESGGAFIGPTQTHIKALADRLGVGTFKEYVAGKNVYVSSNPLLGRQEFTGTVPPDPLILLDAALALAQLDKLAAEVPVDAPWAHPKAAEWDAMTLRQWIDRNTLNSRGIDNLIKAWTQPGFGADPDQLSLLYVLHYIACSGNERNVGTFARNSDVVNGAQESRFVGGSQRVPLLLARKLGDRVALGAAVTKIEHVSGRALVHTTRGRVSARRVVVAAPPKQVLGIDFSPGMPAARRTLLTKVQMGRLMKCDAVYDKPFWREDGLTGFGLSDHGAVRVAFDNGVRNTGHGILLAFVGGSTWRQYGSLSRTERRTAVLQGFAAMFGDKALRPIEYTEHDWTHERWTRGGPVAIYPPGVMATYGRQIRRPFGRVHWAGTETSTYWTGYMDGAVRSGERAAVEVLERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V721</accession>
    <name>A0A0Q8V721_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA-(apurinic or apyrimidinic site) lyase</fullName>
            <ecNumber evidence="3">4.2.99.18</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">ASE19_12365</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <reference evidence="17 18" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FPG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.99.18" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895093.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53166">
        <property type="protein sequence ID" value="KRC53166"/>
        <property type="gene ID" value="ASE19_12365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1162346at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140078">
        <property type="term" value="F:class I DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019104">
        <property type="term" value="F:DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015886">
        <property type="entry name" value="DNA_glyclase/AP_lyase_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012319">
        <property type="entry name" value="FPG_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035937">
        <property type="entry name" value="MutM-like_N-ter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010979">
        <property type="entry name" value="Ribosomal_S13-like_H2TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000214">
        <property type="entry name" value="Znf_DNA_glyclase/AP_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010663">
        <property type="entry name" value="Znf_FPG/IleRS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01149">
        <property type="entry name" value="Fapy_DNA_glyco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06831">
        <property type="entry name" value="H2TH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06827">
        <property type="entry name" value="zf-FPG_IleRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00898">
        <property type="entry name" value="Fapy_DNA_glyco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01232">
        <property type="entry name" value="H2TH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46946">
        <property type="entry name" value="SSF46946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81624">
        <property type="entry name" value="SSF81624"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51068">
        <property type="entry name" value="FPG_CAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51066">
        <property type="entry name" value="ZF_FPG_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="10" id="KW-0234">DNA repair</keyword>
    <keyword evidence="9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="13" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11 17" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="6 14" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="FPG_CAT" evidence="16">
        <location>
            <begin position="2"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="domain" description="FPG-type" evidence="15">
        <location>
            <begin position="243"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012720"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS51066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KRC53166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="292" mass="31438" checksum="FE7A5F86535B021E" modified="2016-01-20" version="1">MPELPEVEALALDLRGRLDGRAITRVHVSAFSALKTYDPPLSAIEGALVDDVRRHGKFLDIEASGLHLVLHLARAGWVRWKDEVPAIPPRPSTKSTLAVRIVLDEQDGLTPGLDITEAGTKKSLALYLVRDPLDVPGIASLGPDPLTDDFTQERLAAILSDAGRKQIKGVLRHQGTIAGIGNAYSDEILHAARMSPFKPADSLSEDELTTLYAAVRDTLGDAVERSRGLAASELKAEKKSNLAVHGQTGKPCPVCGDIVREVSFADSSLQYCPTCQTGGKPLADRRMSKLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V743</accession>
    <name>A0A0Q8V743_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_12550</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="5">Binds 1 Ca(2+) ion per dimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S45 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895123.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53196">
        <property type="protein sequence ID" value="KRC53196"/>
        <property type="gene ID" value="ASE19_12550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="186419at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017000">
        <property type="term" value="P:antibiotic biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.439.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014395">
        <property type="entry name" value="Pen/GL7ACA/AHL_acylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043147">
        <property type="entry name" value="Penicillin_amidase_A-knob"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023343">
        <property type="entry name" value="Penicillin_amidase_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043146">
        <property type="entry name" value="Penicillin_amidase_N_B-knob"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002692">
        <property type="entry name" value="S45"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34218">
        <property type="entry name" value="PTHR34218"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01804">
        <property type="entry name" value="Penicil_amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001227">
        <property type="entry name" value="Pen_acylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0865">Zymogen</keyword>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="230"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="233"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR001227-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001227-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="663" mass="69518" checksum="2A8C75A26FD21CB2" modified="2016-01-20" version="1">MITRDAWGIPHVTGATVLEVAREQGRATAQDRAWQLEVERRRTEGTCAELFGPSALEWDVLARRALLVDVARRAYAALAPESRDFVDAYVDGINDVLERAWHRWTPLAVFAVQHLLFSRFPSKLWQHHVGTVLGADAPEALALLRSEGLPGGSNAVAVAGSLTAGGLPIVAGDPHRVIEAPGCYAQVRLTCTDPDDPFDVAGLTFVGVPGVQHFGHAGAVAWGVTNAVADDEDVYVEELVRHRGAVIARGAPGSGRGWEPVARRVEVVRVRTGADAYDAVPLEVLVTERGPVVVGGPGDAATFSLRNPSYVLGNLGFDTLLPLLRSRSAADVASAFGHWVGPVDNLLVADAGGAVEHRVVGRVPVRSAGDGRWTGWVEDLPRRTGEVLVTANDRATEEFARIGDDFAPPHRARRLAEVVAELAASGPLTPETLADALADDRQVAGESLLDLAAGLLDLSAPASALRDRLLAWDRRMTTSSVEASLFAAVRAAVVESFAAAPALAGVDATPHGELYAPWFDLRGRLRLALPALLRATKPFGVDPLQAVADALEEVAAVPGAGAWGSAHLAVPLTPHQQFGLAAPAGEGAPLIAVAGDDDCVLATRALGGAGACVHGPVARFVWDLAGASRWVVPLGASGDPASPHHHDQQAAWAAGGTIPLEDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7E3</accession>
    <name>A0A0Q8V7E3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895036.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53108">
        <property type="protein sequence ID" value="KRC53108"/>
        <property type="gene ID" value="ASE19_12030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="969868at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="42619" checksum="3D97360AC7376E15" modified="2016-01-20" version="1">MSTLKPLSGVKVLDFTQLMAGPSATMLLADMGAEVIKIEQLDGELSRRLGASLKTIFLAYNRNKRSVSMDLKRAEAQEIVKKLVADCDIVVQGFSPGAMDRMGLGYEDLVKIQPRLVYASLSGFGHRGAGAARKGVDAVVQAETGIMAATGDPDGHPFKVGFQVVDGAAGLALAQAILASLRLRDMTGEPQHVSTSLYDVSAFLQGHYFVEASVTGSEVSRTGNTGGELAYPTDMFETSDGGYIQMAAYLPEQWRLLCEAIERPDLYSDPRFADGSSRVANRKLLRTELVNAIGARTRDEWTARFRRNGIIAGPVLAHVDVMRSEEARQNNTFVQSESGDQRYTAVRMPFTSEAYDIPALASAPQLGADTDKVLAELGYTPEAIAALRESGTVAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Y1</accession>
    <name>A0A0Q8V7Y1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_13265</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895780.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53318">
        <property type="protein sequence ID" value="KRC53318"/>
        <property type="gene ID" value="ASE19_13265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1594866at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359803" evidence="6">
        <location>
            <begin position="33"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="48"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="82"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="107"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="139"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="172"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="236"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="271"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="301"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="329"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="362"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="393"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="7">
        <location>
            <begin position="15"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="428" mass="44443" checksum="0B8E783137F37967" modified="2016-01-20" version="1">MTSLKKASHLHPAWVVAAVAFLALVGAAGFRAAPGALMVPLHDEFGWSTSVMSLAVSINLLLFGLTAPFAAALMDRFGVRRVVASALTLVALGSGGSVLMTASWQLIVFWGVLIGPGTGSMALVFAATIANRWFEHRRGLVMGVLTAGSATGQLVFLPVVASLADGAGWRPASLVVAAAALAVVPVVWLVVRDHPEDRGVRPYGAAEDWTPPARHVGGATRRALEGLAFASRQRAFWALAVAFAICGATTNGLIGIHFIPSAHDHGMSSTTAAGLLAAVGVFDIVGTIASGWLTDKFDPRVLLVAYYLFRGLGLLLLPQLLAASVHPSMVLFIVIYGLDWVATVPPTAALCREIFGDRGTIVFGWVFASHQIGAAVAALGAGVIRDGFGTYTYAWWAGAGLCAIAAVLSVVVGTTATDREPEPAVGTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Z9</accession>
    <name>A0A0Q8V7Z9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">MFS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_15630</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50050">
        <property type="protein sequence ID" value="KRC50050"/>
        <property type="gene ID" value="ASE19_15630"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="25"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="69"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="158"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="217"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="252"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="279"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="300"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="337"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="365"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="1"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC50050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="389" mass="38923" checksum="C0307E404A4AACA2" modified="2016-01-20" version="1">MVAFGLVSLSADMVYEGMRSISGPFLGALGASALVVGIITGAGEAMALLLRLATGPWADRSGRHWRLTVVGYGLTAVCVPLLALAPALGTAGVAVAAALILLERAGKAVRSPAKSALLARVATGGSLGKAFGVHKALDQVGAFVGPLVVAGVTALTGVLWPGFAVLAVPGVLSLLLLAQLARRSPGLTAVEQPEPDGIERRGLGAVLGVDLPPRFHVFSAASALATAGLMTFGVISYRFVEEGLVPLAAAPVVYALAMATAALAALATGWVFDRSGARVLLVVPVLVAVLPPLVFGDRLWVVLAGVALWGVATGVLDSTVKAQVAAVVPAPRRATGYGVFAAVQGLGAVVGGATAGALVTHHATTLALLVAGAQALALVLLLATVRVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V808</accession>
    <name>A0A0Q8V808_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12955</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895725.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53263">
        <property type="protein sequence ID" value="KRC53263"/>
        <property type="gene ID" value="ASE19_12955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="630753at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010775">
        <property type="entry name" value="DUF1365"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07103">
        <property type="entry name" value="DUF1365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="17"/>
            <end position="428"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="686" mass="74731" checksum="415D8D48036B3A80" modified="2016-01-20" version="1">MSTTTTPRRIAVVGSGVAGLTAAYVASRPANGTHVTLLEADDRLGGHADTHDVTDPTGRALRIDSGFIVHNRRTYPVLLRLFAELGVPTQESEMSMSISDEATGLEWAGALGRRGVFPSGTGNHRNPAYLRMLREVPRFHRRARRLLEAATDPAADPTTLAAFLDEGRFSPYFRRHFMEPLVAAVWSCDPDTALDYPAAYLFAFLSHHGMLQVFGSPPWRTVTGGSRTYVDAVAAALRGSGAEIRTGAPVVSVKETTGGVEVRTAAGLEEYDAVVIATHPEQAIALLAEPTSAQREVLGALPYSPNTALLHTDERLMPGATDTHASWNFRRPAADRAGVLVTYDMTRLQRLPTGTRYLVTLGGEDLVDPATVIARREYAHPLYTPSSVAAQRRLPELDSDRLAFAGAYHGWGFHEDGARSGLKAAERLGLLWGGPVAPANVVRDEVAATSYRTTLVHQRREPIANRFEHRTRLWVVDLDRVDAHGRAPGGRGRFLGRDHFDGDTDSVREGLDRFLAAHDLDLRGGRALMAAHSRAFGQCFNPITVHWCWKDRDGRGRPAATVVEVHNTYGGRHSYLLDTDEHGRAVVDKALYVSPFHGTDGHYEVIAPPPDPTTGRLRLAVGLRTDDGARFDAGLTGEPAPAPLLPLASLRGAALIRAHGIALWLRRLPVQPRPADERSLQEGSIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V809</accession>
    <name>A0A0Q8V809_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13450</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895814.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53352">
        <property type="protein sequence ID" value="KRC53352"/>
        <property type="gene ID" value="ASE19_13450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="15"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="287" mass="31518" checksum="6D6B83FA85AB6001" modified="2016-01-20" version="1">MAINLHVVLWPIHDWPTLRSHWQQAEEMGFVGGWVYDHLAWRGHTPWDEATTSLAAAAAVTDRIRLGTLVTSPNFRTPIPTAAALRTIDRISGGRLTVGIGAGGDSPQSDGEILGRTWTPRERADRFAEYVEQLDALLSDVGVSTAGEYWTAADAHIGAGLVQRPRPPFWIAAGGPRGVRLAARYGQGWVANPSSEAPYEEVRRQSALFEKACADIGRDVTGVPRLLLTGFTDEPWLESLDSFEDLAGRYAELGITDIAIHWPRPDSLWDRDPAVFEQIAAACQSQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V823</accession>
    <name>A0A0Q8V823_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895785.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53323">
        <property type="protein sequence ID" value="KRC53323"/>
        <property type="gene ID" value="ASE19_13290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1756663at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="133" mass="13744" checksum="957B577C236916F5" modified="2016-01-20" version="1">MPARQARILFRTAALFNAAAVLLFLPALGLAEDLGLRPVPTDTVFSHIGIAAIGLFGVGYWMAGGSPDRNRGIVQLGLAGKVLVVAIVAGHLVDGTANGRLTAVVSGDVVFSLLFAWYLVATRVPAPARPPSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V827</accession>
    <name>A0A0Q8V827_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_14615</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896945.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53557">
        <property type="protein sequence ID" value="KRC53557"/>
        <property type="gene ID" value="ASE19_14615"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1031685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="126"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="150"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="210"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="428" mass="45244" checksum="BF26418CEEB56689" modified="2016-01-20" version="1">MRERLVLAFVGLTVAVIGLYGVPRAYFLADLVRDDARASLNGSGAVLEDLIEERTDDGGTVDAALLRSGLVAADRVELDPADGAPLAVGAPDEDDDGVTVTRTLPDGSTLRLSVSGSSIGSSVRDALLPLVLLGLVLALGSAVLGVALARRLSRPFQELAGLSRDLGQGRFDLDVPTFVIPEADEIGAALRGAAAQLDDLVRREREFAANASHQLRTPITALRLSLEDLALWPETDPAVATELAHGLDELDRLSAAIDELLDLARGRRIEAEQQVDLVAVVRATAERWEARLAAESRSLVTRQSGRRSRTRVPIGPLDQALDILVDNARQHGRGTITVEVRDADTHLEVVVGDEGTAELGPEVFHRGVSSGAQGSEGIGLALASELVEVCGGHLSLDTSAPTTRFVVWLPPRDRVVGPDLSRSAGPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V878</accession>
    <name>A0A0Q8V878_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cardiolipin synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13550</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895833.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53371">
        <property type="protein sequence ID" value="KRC53371"/>
        <property type="gene ID" value="ASE19_13550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="968978at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001736">
        <property type="entry name" value="PLipase_D/transphosphatidylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50035">
        <property type="entry name" value="PLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PLD phosphodiesterase" evidence="1">
        <location>
            <begin position="172"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="234" mass="24977" checksum="7F80EE315489BB02" modified="2016-01-20" version="1">MPSDPFASLGEFLTGSEAAGLAVQFASGQHVVRALSVVNAARRAEAKQLLADAGLSHENGQQAAGVLHAVAGAKSLNRDLTPVWTMPGNEAQVGHLTGEFHRLVLAARQSVVCATYNFEQTSQMWKVLKEASEQPGVVVTVYVDGDKADAAKLKTQLPKASIYQSAELHNGKRVVSHAKFIVIDHELLLLTSANFSFSAENRNVEFGLLVRDSALAESVESAMVSKHGSLYALV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8B5</accession>
    <name>A0A0Q8V8B5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NTP_transf_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13490</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53359">
        <property type="protein sequence ID" value="KRC53359"/>
        <property type="gene ID" value="ASE19_13490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1401061at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NTP_transf_2" evidence="1">
        <location>
            <begin position="110"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="23381" checksum="131D80EFE4818B53" modified="2016-01-20" version="1">MGRVDLSDPTQSLIPSLDGAVLAVLVGTEGALSATTVQRLARRGSRAGLSLALDRLTLHGLVIAEPANRGHMYRLNRHHVLAEAVLSATSARAELLTRMQDGLTGWEPAPVHVCVFGSFARGEGGPESDIDVFVVTSDGIDRHDESWTNQLRTWADDVLMWSGNRVEFLSMSLSELADAARGEEPVLDSIRDDGIVLLGPAPAEVIASALRGRKKGNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8C2</accession>
    <name>A0A0Q8V8C2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">dTDP-glucose 4,6-dehydratase</fullName>
            <ecNumber evidence="4 6">4.2.1.46</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_09455</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>dTDP-alpha-D-glucose = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H2O</text>
            <dbReference type="Rhea" id="RHEA:17221"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57477"/>
            <dbReference type="ChEBI" id="CHEBI:57649"/>
            <dbReference type="EC" id="4.2.1.46"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 6">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.46" evidence="4 6"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895150.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53598">
        <property type="protein sequence ID" value="KRC53598"/>
        <property type="gene ID" value="ASE19_09455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="707977at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008460">
        <property type="term" value="F:dTDP-glucose 4,6-dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009225">
        <property type="term" value="P:nucleotide-sugar metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05246">
        <property type="entry name" value="dTDP_GD_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005888">
        <property type="entry name" value="dTDP_Gluc_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01181">
        <property type="entry name" value="dTDP_gluc_dehyt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="7">
        <location>
            <begin position="15"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00016977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="342" mass="37630" checksum="C902B5FDDAA805ED" modified="2016-01-20" version="1">MPLILPRLFHVQRVLVTGGAGFVGSALVHHLVAHTDVRVTVLDKLTYAASPASLADLPSDRFELVVGDVADAGLVDPLVAAHDTVVHLAAESHNDNALDDPAPFIHTNLVGTFTLLEAVRRHDARLHHVSTDEVHGELALGAPDRFTEESAYRPSSPYSASKAGADHLVRAWVRSFGVRATISTCSNNYGPWQHVEKFVPRQVTEVLEGRRPKVFGTGANVRDWIHAADHASAVLAILERGRIGETYLVGADGERSNLDVVRLLLRILGRAEDDYELVADRPGHDLRYAIDATKLRTELGWTPRYADLAAGLEETVRWYREHADWWRPAKAATEAAYSAKHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8E2</accession>
    <name>A0A0Q8V8E2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14540</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896957.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53546">
        <property type="protein sequence ID" value="KRC53546"/>
        <property type="gene ID" value="ASE19_14540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="413616at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359795" evidence="1">
        <location>
            <begin position="29"/>
            <end position="799"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="799" mass="82794" checksum="5680AC9AEF4B085A" modified="2016-01-20" version="1">MSPRSLATTALASLGATLVALVPSAAHAGPADAPTAPTTYLSTPFDTLVSGNLCTGATDPQGNPISVSSVNPGAGTVDLQGCAFTYTPPVGASGDNHGFSYRLTDGTNISTDLIVQVAVGVAGNAPVVTAGDALDAKKNRWLLIEDIDGTLLANDVDPEGAPMTVGSHSIGTFLPGEQMIGAASFGPKAVQYRPPTDFVGTRTFVYEAQDGVNETHQSFTITVADAGAFQKPVTVADSYDVPRNGSLKVARAQGILANDTDADSSYVRANAWFTSTTHGTITGYNAYTGEFTYTPAAGFVGTDTFQYYAVDPEGNHGDAVTVTLHVVTPPPVAVVDSYKTAQGVPLVTDAAHGLLANDSDPDSSFEIGGYLAPGLHGTFAPNLTTGAFTWTPSAGWSGTDLLTYRLVDPDGNTSDWVTVTLKAVAPGGNEAPDALPNDYQVREGNPLTVAAPGLLGNDADFEAGDLDVASHTEPAHGDLTAFDAETGAFTYTGDAGWRGTDSFTYRASDAQGTLSAPAAVTIKVFNDKPVVVDDSYTTVPGVPFVVPAAEGVLANDTDLEGDSFEKASHFSPQHGKVFVELDGSFTYTPADGFTGVDTFKYDVRDAAWNLSDTATVTITVAPGTITSPAPTVSGTARVGSVLTAGTATWGPGTVTKAYQWLRSGAVIEGATQATYRLGSADLGTMVSVRVTGTKAGYPSVERTSTARTVAHGILVAPRPRISGTPAVGRTLKAIAGTWGPGTVVKTYRWYRNGVAIKGASRASYRLTRADRGRRITVRVTGRKAGYVTTVRTSGAVRVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9F2</accession>
    <name>A0A0Q8V9F2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">M20_dimer domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07775</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895397.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53966">
        <property type="protein sequence ID" value="KRC53966"/>
        <property type="gene ID" value="ASE19_07775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="275025at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="1">
        <location>
            <begin position="198"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="453" mass="47921" checksum="F8B0354419021C41" modified="2016-01-20" version="1">MTGPVTTTDLRTRLAGLLPGVRSDLEALVRIQSVSADPARLDQVEESARATAELFAAEGVDVEIVRAFDGAPPAVVGEKKGPEGAPTVLLYAHHDVQPENDHADWDSPPWEPTERDGRLYGRGAADDKAGIITHLAALRAFGDELPVTVRLFIEGEEEVASATLPQLLKKYEDRLRSDVIVIADSGNWDIGVPALTTSLRGLIRVDVELRTLTHAVHSGMWGGLEPDAIMALIRLLDTLWDADGGSAIEGLVSGPAADVEYPEERLRAESGAVPGLEWVGTGTSVERLWTKPAVTVTGFDAPKVDGASNTLSPVARARVTVRIAPGDTGENAVARLQAHLEKNVPWGAQLSTKVVDTGEPIAIDATGPAYDAARSAFTEAWDGTPPVDMGVGGSIPFIAEFLESFPGASVLVTGVEDPDTRAHGPNEGLHLAEFEKVLLAEALLLRNLGTPGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9N7</accession>
    <name>A0A0Q8V9N7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Molybdopterin synthase sulfur carrier subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07460</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895344.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53912">
        <property type="protein sequence ID" value="KRC53912"/>
        <property type="gene ID" value="ASE19_07460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1995573at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="SSF54285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="91" mass="9551" checksum="513325019942CB18" modified="2016-01-20" version="1">MNETEVIRVRYWAAARSAAGVAEETVAVPGPVSLTALREELLARHPDGRLGDVVKVCSVLVGDRPVSSGDPAEVVVRPGETVEFLPPFAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Y5</accession>
    <name>A0A0Q8V9Y5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07575</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895362.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53931">
        <property type="protein sequence ID" value="KRC53931"/>
        <property type="gene ID" value="ASE19_07575"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="97" mass="10360" checksum="7F8DB2A3EA1B6337" modified="2016-01-20" version="1">MTAMTLDLDRIQHLASTAGYPPLTTDTARRIVGVIAGTPDPADDSGDEIWDLAWAVATHLLEKLSPQLADDVMEVGWIAEQIYPICRDAAAVAGEVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA54</accession>
    <name>A0A0Q8VA54_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acetyl-CoA hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08690</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the acetyl-CoA hydrolase/transferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895554.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54122">
        <property type="protein sequence ID" value="KRC54122"/>
        <property type="gene ID" value="ASE19_08690"/>
    </dbReference>
    <dbReference type="OrthoDB" id="319106at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008775">
        <property type="term" value="F:acetate CoA-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003986">
        <property type="term" value="F:acetyl-CoA hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006083">
        <property type="term" value="P:acetate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019679">
        <property type="term" value="P:propionate metabolic process, methylcitrate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1080.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026888">
        <property type="entry name" value="AcetylCoA_hyd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038460">
        <property type="entry name" value="AcetylCoA_hyd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003702">
        <property type="entry name" value="ActCoA_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13336">
        <property type="entry name" value="AcetylCoA_hyd_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02550">
        <property type="entry name" value="AcetylCoA_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AcetylCoA_hyd_C" evidence="2">
        <location>
            <begin position="263"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="423" mass="43870" checksum="3DF625A5C0F0D4C2" modified="2016-01-20" version="1">MARVRIDLAQHVRPGDTVTWGQTCAEPTTLVEELVRQADAIGDLRCFVGIPAESALTAATVPDSLVVHSYCGAGTNAALHAAGRLEIWPVHYSTLPGLLAHGGDLHADVVLVQVSPPDEQGRHSLGLGDDYFSAALDSARVVIAEINDQVPFTLGARTLTADRFTAAIEVSRPPGQLPTPAVGDDARAVARRVAALVPDGATLQFGIGALPEAVLAELFGHRDLGIHSGIINDTAMRLVEAGVATGARKTLDRGVAIGGLFGGTTELFGWAHRNPAVELRSTGYTHDPAVLAASYRLVAVNAAIEVDLTGQVNSELAGGRYVGAVGGAVDFLRGAASSPGGVPIVALPSTARSRSGPVQRIVSRLSGPVSTPRSEGIVVVTEHGVADLRGATLNQRVERMIAVADPAHRAELDAHADRVLASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBW2</accession>
    <name>A0A0Q8VBW2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13370</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0749 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895799.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53337">
        <property type="protein sequence ID" value="KRC53337"/>
        <property type="gene ID" value="ASE19_13370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1883872at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010273">
        <property type="entry name" value="DUF881"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37313">
        <property type="entry name" value="PTHR37313"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05949">
        <property type="entry name" value="DUF881"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="266" mass="28454" checksum="AFDE81866F0C2DD4" modified="2016-01-20" version="1">MTGTHAGAPPGHRTSRSRAWRIGTPVVALLSGSLLAVSAANSDGTDLRPGRYTDLAGLVEAEAKDYQGVEDRFNQLTAEVDRLGAGVSDRGVDRARREVAELRDPAGLTPREGQGLRITMSDSPDELVDEAIEFNKNAAPEDKLKLNRFVVHQQDIQAVVNALWSGGATAVTIAGQRVISTTGIKCRGPVVQLQGVPYSQPFVIEAVGDQSALLGSIDADPLVSGFRTDALNSQIGIGWTMDAEERVKAPAYDGLLDLQYARPLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC13</accession>
    <name>A0A0Q8VC13_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Type-5 uracil-DNA glycosylase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_04870</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="8">Belongs to the uracil-DNA glycosylase (UDG) superfamily. Type 5 (UDGb) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894276.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54805">
        <property type="protein sequence ID" value="KRC54805"/>
        <property type="gene ID" value="ASE19_04870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1529383at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033958">
        <property type="term" value="F:DNA-deoxyinosine glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004844">
        <property type="term" value="F:uracil DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10031">
        <property type="entry name" value="UDG-F5_TTUDGB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044147">
        <property type="entry name" value="UdgB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005122">
        <property type="entry name" value="Uracil-DNA_glycosylase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036895">
        <property type="entry name" value="Uracil-DNA_glycosylase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03167">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00986">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52141">
        <property type="entry name" value="SSF52141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDG" evidence="10">
        <location>
            <begin position="50"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC54805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="242" mass="26202" checksum="9E163F32CF6EE53C" modified="2016-01-20" version="1">MTDPAEAMARLDARIVRCRKCPRLVAWREQAAREKRAAYADEDYWARPVPGFGPPDARILVIGLAPAAHGSNRTGRMFTGDRSGDWLFASLFRVGLANQPTSVARDDGLELTGVRMAAPVRCAPPANKPTPEERATCAPWLDDELAVLAPSVRVVVTLGAIGWSAALHALGSAGWSVPRPRPRFGHGAEVRLQPAPGARRTELVVLGCFHPSPHNTFTGRLTEPMTDEVFLRARTLAGMMAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCT6</accession>
    <name>A0A0Q8VCT6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">zf-HC2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06345</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894463.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55054">
        <property type="protein sequence ID" value="KRC55054"/>
        <property type="gene ID" value="ASE19_06345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1740922at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1320">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041916">
        <property type="entry name" value="Anti_sigma_zinc_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027383">
        <property type="entry name" value="Znf_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13490">
        <property type="entry name" value="zf-HC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="domain" description="zf-HC2" evidence="2">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="221" mass="23225" checksum="201EFDCF26F764E9" modified="2016-01-20" version="1">MTCEFAHHDGVYVLGAMAAGERAEYERHLSGCDDCSRALRDLAGIPGLLARVDGDVVEQLGRTEPVPPTLLPSMVAEARRSRGRRRLLRVSVAAAAAVLLAFAALRIGTTLGDDEPAPPELAAAQRMDGLGTGSSGWVSLTARPWGTRIDLTCTYEGPVSGTATYVLVVRAADGHTEQVGTWQTAPSKEVALTMAASLAPEDIASVEVQTASGYSVLRVDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD40</accession>
    <name>A0A0Q8VD40_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06330</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894461.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55052">
        <property type="protein sequence ID" value="KRC55052"/>
        <property type="gene ID" value="ASE19_06330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="972769at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="326" mass="33905" checksum="4DD563F7DD6FA014" modified="2016-01-20" version="1">MVDARAYWVVEPGRGEIRPLALPEPGAGEVLVRALHSGISRGTESLVHAGRVPASQHATMRAPFQEGDFPGPVKYGYLGVGVVEQGPDDLRGRTVFCLHPHQSAYVVPATAVLPVPDGVPAARAVLAGTVETAVNALWDAPPLLGDHVVVVGAGLVGCCVARLAAGVPGVRVTLVDTDPGRSEVAAALGAGFAGADEHPGRSDLVVHASATEAGLRRALELVEPEGTVLDLSWYGDRPVAVPLGEAFHSGRLTLRSSQVGAVAPARRATRSHRDRLTLALELLRDPAFDVLLTGSSPFGELPAVMARIASGDLPGLCHTIDYSEES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEK1</accession>
    <name>A0A0Q8VEK1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">1,4-dihydroxy-2-naphthoyl-CoA synthase</fullName>
            <shortName evidence="3">DHNA-CoA synthase</shortName>
            <ecNumber evidence="3">4.1.3.36</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">menB</name>
        <name evidence="4" type="ORF">ASE19_11635</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>2-succinylbenzoyl-CoA + H(+) = 1,4-dihydroxy-2-naphthoyl-CoA + H2O</text>
            <dbReference type="Rhea" id="RHEA:26562"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57364"/>
            <dbReference type="ChEBI" id="CHEBI:58897"/>
            <dbReference type="EC" id="4.1.3.36"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Quinol/quinone metabolism; 1,4-dihydroxy-2-naphthoate biosynthesis; 1,4-dihydroxy-2-naphthoate from chorismate: step 6/7.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Quinol/quinone metabolism; menaquinone biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.3.36" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894967.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53037">
        <property type="protein sequence ID" value="KRC53037"/>
        <property type="gene ID" value="ASE19_11635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275789at2"/>
    <dbReference type="UniPathway" id="UPA00079"/>
    <dbReference type="UniPathway" id="UPA01057">
        <property type="reaction ID" value="UER00167"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008935">
        <property type="term" value="F:1,4-dihydroxy-2-naphthoyl-CoA synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009234">
        <property type="term" value="P:menaquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01934">
        <property type="entry name" value="MenB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010198">
        <property type="entry name" value="DHNA-CoA_synthase_MenB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43113">
        <property type="entry name" value="PTHR43113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01929">
        <property type="entry name" value="menB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 3" id="KW-0474">Menaquinone biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="94"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="157"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="287"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="302"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="3">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="3">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="3">
        <location>
            <position position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="314" mass="34751" checksum="588E589785135F5E" modified="2016-01-20" version="1">MSAIEGVSETFDASQWDVVPGFEDLTDLTYHRAKAHGTVRIAFDRPDVLNAFRPHTVDELLRTLEHARQSADVGCVLLTGNGPSAKNGKRSFCTGGDQRIRGRAGYQYEDKSIGADDTGAEEPSAIDKARLARLHILECQRLIRFMPKIVICVVPGWAAGGGHSLFVTCDLALASTEHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGQEYSADDAVRMGAANRSVPHAELEATALEWGRLINGKSPTAQRMLKYSFNLLDDGLVGQQLFAGETTRLAYMTDEAQEGRDQFLEKREPDWSPYPWYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGZ2</accession>
    <name>A0A0Q8VGZ2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF5931 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02615</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892752.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56734">
        <property type="protein sequence ID" value="KRC56734"/>
        <property type="gene ID" value="ASE19_02615"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045975">
        <property type="entry name" value="DUF5931"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19354">
        <property type="entry name" value="DUF5931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5931" evidence="2">
        <location>
            <begin position="1"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="358" mass="37641" checksum="87586256FC385AEA" modified="2016-01-20" version="1">MFRALAVLRVVVLGYTVVVNVYRNNYDRPVLGWSCVAIMVVATFVLIAVYAAPERRGPALLVVDLALAVAMLLATPVAKGPWFHATIPSYWIVGALLAWAVRWGWRGGTTAAVLLGAVDLLTRSHVEQKDWGNVFLLLLGGSMVGFVCESLKAMAAERDEAQREAAAAAERARLARVVHDGVLQVLALVQRRGGELGGEAADLGRLAGEQEQVLRTLIRSQAAAPAPVGASTADLAVALGVLGARPGTEVALPAGVVPLPREVVSELVAVVRACLDNVDRHVGDGAPAWVLLEDLGDAVEVSVRDDGSGIPEGRLEAAAAQGRLGVAESIRGRVHDLGGTATLDSGSYGTEWTLRVPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH07</accession>
    <name>A0A0Q8VH07_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02305</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892698.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56680">
        <property type="protein sequence ID" value="KRC56680"/>
        <property type="gene ID" value="ASE19_02305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1390922at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="2">
        <location>
            <begin position="10"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="136"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="136"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="156" mass="16858" checksum="8021BD0F1B552159" modified="2016-01-20" version="1">MTATEPDDGLILRPATPDDAEAVADVHLRARAASPMPAGIHPDAEVRAWLAARLDGSGDEVWAAEVGDRVVGYARFTRTWLDDLYVDPDHAGAGIGSALLDLVKARHPGGFGLWVFVANEPARAFYAARGLVERERTDGSGNEERAPDVRMEWTPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH10</accession>
    <name>A0A0Q8VH10_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_02035</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892653.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56636">
        <property type="protein sequence ID" value="KRC56636"/>
        <property type="gene ID" value="ASE19_02035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1523519at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="54"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="104"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="128"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="168"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="238"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="59"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC56636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="268" mass="28792" checksum="3A2F18622D8BE722" modified="2016-01-20" version="1">MRRSTRRRLQIWALNLGVVVVAAVLVLLADWGRIHENFWSDDGVALSGGNWGDLITIGAVNTIKYTAIAFAGGLALGLALALLRLSPVATLRWLATVYIEFFRGLPALIVIVFMGFGLPIAFQWRPPGGLVGAGLIALIMVAGAYMAETLRAGIQAVPKGQTEAARSLGMGSIATTTRVVLPQAFRIVIPPLTNEFVLLIKDTALLSVIGATFDQRELTTIARDFQSSGVSAGTATSLVQAALLYLVITLPLTQLVSWLERRQRKASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH70</accession>
    <name>A0A0Q8VH70_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">ATP synthase gamma chain</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">ATP synthase F1 sector gamma subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">F-ATPase gamma subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">atpG</name>
        <name evidence="11" type="ORF">ASE19_03200</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the ATPase gamma chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892849.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56830">
        <property type="protein sequence ID" value="KRC56830"/>
        <property type="gene ID" value="ASE19_03200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1701531at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042777">
        <property type="term" value="P:proton motive force-driven plasma membrane ATP synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd12151">
        <property type="entry name" value="F1-ATPase_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00815">
        <property type="entry name" value="ATP_synth_gamma_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035968">
        <property type="entry name" value="ATP_synth_F1_ATPase_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000131">
        <property type="entry name" value="ATP_synth_F1_gsu"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11693">
        <property type="entry name" value="PTHR11693"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00231">
        <property type="entry name" value="ATP-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00126">
        <property type="entry name" value="ATPASEGAMMA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52943">
        <property type="entry name" value="SSF52943"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01146">
        <property type="entry name" value="ATPsyn_F1gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0139">CF(1)</keyword>
    <keyword evidence="10" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4 9" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="5 9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0813">Transport</keyword>
    <feature type="coiled-coil region" evidence="10">
        <location>
            <begin position="249"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC56830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="304" mass="33604" checksum="EE744849B0AA27BA" modified="2016-01-20" version="1">MAVSLREYRARIKSTESMKKITRAMELIAASRIIKAQQRAAAAAPYARELTRAVSAVATYSNVDHPLTREEENPKRAAVLVITSDRGLAGAYSSSVIKETERLSERLRAEGKELDFFLAGRKAEAYFKFRNRPYVQSWTGFSDQPTYDKAAEIGAALIEAFLKEQGEDGDVDEVHVVYTRFRSMLTQEPTAVRLLPLEVVEGEEAPATEDLLPLYEFEPSAEQVLDGLLPQYVQSRIFYSLLQAAASELAARQKAMKSATDNAEELIKKLTRIANQARQAGITQEISEIVGGVNALADAQAAND</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHJ6</accession>
    <name>A0A0Q8VHJ6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Phospho-N-acetylmuramoyl-pentapeptide-transferase</fullName>
            <ecNumber evidence="7">2.7.8.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">UDP-MurNAc-pentapeptide phosphotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mraY</name>
        <name evidence="8" type="ORF">ASE19_02380</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the initial step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan: transfers peptidoglycan precursor phospho-MurNAc-pentapeptide from UDP-MurNAc-pentapeptide onto the lipid carrier undecaprenyl phosphate, yielding undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide, known as lipid I.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>di-trans,octa-cis-undecaprenyl phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine = di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + UMP</text>
            <dbReference type="Rhea" id="RHEA:28386"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:60392"/>
            <dbReference type="ChEBI" id="CHEBI:61386"/>
            <dbReference type="ChEBI" id="CHEBI:61387"/>
            <dbReference type="EC" id="2.7.8.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the glycosyltransferase 4 family. MraY subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.13" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892712.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56694">
        <property type="protein sequence ID" value="KRC56694"/>
        <property type="gene ID" value="ASE19_02380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1151822at2"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008963">
        <property type="term" value="F:phospho-N-acetylmuramoyl-pentapeptide-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051992">
        <property type="term" value="F:UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06852">
        <property type="entry name" value="GT_MraY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00038">
        <property type="entry name" value="MraY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000715">
        <property type="entry name" value="Glycosyl_transferase_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003524">
        <property type="entry name" value="PNAcMuramoyl-5peptid_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018480">
        <property type="entry name" value="PNAcMuramoyl-5peptid_Trfase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22926">
        <property type="entry name" value="PTHR22926"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00953">
        <property type="entry name" value="Glycos_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10555">
        <property type="entry name" value="MraY_sig1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00445">
        <property type="entry name" value="mraY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01347">
        <property type="entry name" value="MRAY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01348">
        <property type="entry name" value="MRAY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="7" id="KW-0132">Cell division</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="52"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="117"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="156"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="187"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="227"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="253"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="279"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="329"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC56694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="356" mass="38708" checksum="DDE9679E9AA02CA7" modified="2016-01-20" version="1">MRAILLGGGIALLISLLGTRVVISLFTQWGYGQEIRDDGPTSHHTKRGTPTMGGVVIILAAVVGYFAAKLITLTTPSASALLLLFLFVGMGLVGFLDDFIKISKQRSLGLRSKAKMAGQTVIALVFGWLALSSWLEDENGRTPASEKVSFLRELDWFVLPMILAILLIWLFVAGFSNAVNLTDGLDGLAAGASVMVFGAYTLVNIWQSNQFCQDEPSASCYNVRDPLDLAIIAAAITGACFGFLWWNASPAKIFMGDTGSLALGSALAGFAILTRTELLLVILGGLFVLETLSVMMQVGYFKLTKGKRIFRMAPIHHHFEMLGWEQVTVVIRFWIITGLFVATGLGIFYAEWVSRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHQ9</accession>
    <name>A0A0Q8VHQ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05755</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54953">
        <property type="protein sequence ID" value="KRC54953"/>
        <property type="gene ID" value="ASE19_05755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1781at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="SSF49265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="160"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="359"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="160"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="384" mass="38979" checksum="4D4DDDB74508E48D" modified="2016-01-20" version="1">MLRQLDGRVLLAWQAPRGGTPATGYRLAWPGGGRTLPATSTATWASGLDNGVPTSLAVWALNEHGAGPRRNVVAEAAGRPDVPLLDEPIVADAAGGTVKHVTVAWVAVAPNGPGPVEYFVEAAGGRTICGGSGWTTGTSCSDTLPNDGSTTSYTVRARNAEATSGRSAPTPFTSAASAPRTVEAAAPPEGVSMLRAVATGVGGQARVTFDVGPSHGRENVIHCMPSCGNLASVQVSTTGASDVSFLIGGLVDGNVSTIMVWTCNGSSGSAQTGASCSASTTDPATTFGPLGTPTVDAHVQGACFEWRVRGDANGKPAMLVILAQGFTQSWTITGSATRMGSYCPGFGQTRTFTVRIEDSSATAEQPLDRGSRQASTTALTTTAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHS0</accession>
    <name>A0A0Q8VHS0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03740</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892941.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56924">
        <property type="protein sequence ID" value="KRC56924"/>
        <property type="gene ID" value="ASE19_03740"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014917">
        <property type="entry name" value="DUF1800"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08811">
        <property type="entry name" value="DUF1800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="488" mass="54074" checksum="6D85652036B7489B" modified="2016-01-20" version="1">MAYAPRAWTRTAIPSAATLHGLRRFTAGYTPALNRQVVAAGGFPTWFVRQLGSTYSDSWYTTTSAWWTSVNASPEAIWQRHVDGVEEMWMADANYERWALVRRLGSQRQVLESMAELWEHHLHVPASGEVGPFRTSYGRTIRRLALGRYADLLEAAILHPAMAVYLGNANSSKKAPNENLGRELLELHTVGRGNYTEDDVKGSARILTGYRVAAWDTWAFSYDPNRHWTGPVQVMGFSHANSDPDGRAVVQAYLRYLARHPATARRVALKIARRYVSDAPPAALVERLAKVYLANDTRIVPVLRSLVASSEFKASSAIGRKVRTPTDDVVATWRALGARITVRPADSEAESSANEILWQAQSVGLRPFSWAPPDGRPDTAAAWSSTSRFLNSLDVHYTMSGGWWPTAGATYRTPASWLPATRIRFDHLVDHLARTMHGRGSTSVLLKAACEATGCTPATVITASHGLVRWDMARLLTVLLDCPTHMTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHU4</accession>
    <name>A0A0Q8VHU4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peripla_BP_6 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57016">
        <property type="protein sequence ID" value="KRC57016"/>
        <property type="gene ID" value="ASE19_02065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peripla_BP_6" evidence="1">
        <location>
            <begin position="35"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="363" mass="37010" checksum="C2C9A6F331CA2DD0" modified="2016-01-20" version="1">MAVLALSLSMTACGSDDSGDDDTNAGGGNLCGKNLAFLGALTGDAGALGQNMVNGINLALKEYNADNADCKINLKTFDSQGSPDKAPALATQIINDDSIVGLVGPGFSGESLATGKTFFESGLPSISPSATNVTITEQGWTTWHRVIGNDDAQGAADAKYLTETVGAKKVFVVDDGQDYSKGLAGKVKDSLGDALVDSDQISVGDTNMSAIVQGVKSSGADAVFYGGYYTEAGLLAKQLRQGGFKGTFMSGDGSEDPNFVKVAGAEGAEGAVLSAPAAPAPADFGASGLYATQAYDATNIFLAAIKDGASDGQEINEFIGSYTGDGVSGPIAFDDKGDIKESAIYAYFVKDGALDVENPEEIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI25</accession>
    <name>A0A0Q8VI25_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Fatty acid desaturase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_03395</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893085.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57052">
        <property type="protein sequence ID" value="KRC57052"/>
        <property type="gene ID" value="ASE19_03395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005804">
        <property type="entry name" value="FA_desaturase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012171">
        <property type="entry name" value="Fatty_acid_desaturase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19353">
        <property type="entry name" value="PTHR19353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00487">
        <property type="entry name" value="FA_desaturase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="domain" description="FA_desaturase" evidence="3">
        <location>
            <begin position="70"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="361"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="380" mass="43080" checksum="02295D304A8AA078" modified="2016-01-20" version="1">MEPVATTTDEKYHGLTHAEIDQLGAELDALRLRIIADLGEVDAEYLRKVVKAQRSFEIAGRALFYLPVIGWVPAVAALSVSKILDNMEIGHNVMHGQYDWMGDPSFNSRMFDWDTMAPAENWKYGHNYMHHTYTNVVGKDRDVGYGILRMDPEQKWNPYYLGNPLWAFLLMTFFEWGVALHDLETEEVFAGRRKMFGGENAPIWRRIRKKMGKQVLKDYVLFPALTGPLFLSTLAGNAVANLVRNVWTFNIIFCGHFPAGVASFSVEETENETRGQWYLRQMLGSANITGGKLMHVMSGNLSHQIEHHLFPDIPARRYPEMAVEVQEICERYGLPYNKGPLHKQLFSVFSKIVRLSFPGGAQKEAPVRGPQAVTDDSLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIL7</accession>
    <name>A0A0Q8VIL7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SCP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_24075</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894036.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57402">
        <property type="protein sequence ID" value="KRC57402"/>
        <property type="gene ID" value="ASE19_24075"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1705869at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.33.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014044">
        <property type="entry name" value="CAP_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035940">
        <property type="entry name" value="CAP_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00188">
        <property type="entry name" value="CAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55797">
        <property type="entry name" value="SSF55797"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360068" description="SCP domain-containing protein" evidence="1">
        <location>
            <begin position="27"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="SCP" evidence="2">
        <location>
            <begin position="60"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="179" mass="19755" checksum="D556A67738DEE1C4" modified="2016-01-20" version="1">MTKIFRLVACTVLGLALGMAGSPSEAAVVAPSGVTRSVVSVQDVVPTRLLIQRLLEDRVLALTNVERRKHGCPTLRANTYLRKSARGHTVTMAAHDLMSHQLPGEPYFSRRITRAGYRGWSSVAENVARGFSGPSSVVRAWMNSPSHRRNILNCRYRDLGVGVALDGGQLWWTQNFGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIN6</accession>
    <name>A0A0Q8VIN6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_09000</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895608.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54176">
        <property type="protein sequence ID" value="KRC54176"/>
        <property type="gene ID" value="ASE19_09000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041490">
        <property type="entry name" value="KstR2_TetR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17932">
        <property type="entry name" value="TetR_C_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="5">
        <location>
            <begin position="9"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="195" mass="20757" checksum="28B7E9A4CE5ACA6A" modified="2016-01-20" version="1">MEAPETKAARTRRRILAASAHEFAVHGYGGASLRRIADAAGLKVGSLAFHFPTKDDLVAATLADGVESARAALKEAIAAVPDDAEPVERLRAAVHGHLAALHASDDRAAAVVRMVETLPAELRAAHADHERRFARVWLDVLSRGRKEGVVRDDVDLRVLRDLVVGALNSTSTASPKAHPDLRAVEATVVRLVAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIR5</accession>
    <name>A0A0Q8VIR5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">SSD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_11705</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894977.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53047">
        <property type="protein sequence ID" value="KRC53047"/>
        <property type="gene ID" value="ASE19_11705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="149255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023908">
        <property type="entry name" value="xxxLxxG_rpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03057">
        <property type="entry name" value="xxxLxxG_by_4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="24"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="194"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="220"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="251"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="296"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="329"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="371"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="832"/>
            <end position="849"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="856"/>
            <end position="881"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="887"/>
            <end position="908"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="929"/>
            <end position="950"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="962"/>
            <end position="987"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="7">
        <location>
            <begin position="259"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1012" mass="104532" checksum="32230CC0B0F80287" modified="2016-01-20" version="1">MSSDAGGDTGSKVARYARFVVRRAAWVVGAWLAFTVVMNVAVPQLEVIAGQDSSPMVPDDAPSMVAVKAMDEAFGNGGAESFIVVAMERTAGLTAKDRTYAESLVDELGRDKDDVVFVQDIRRPELRKALTSTDGQARYLLVGITGATGAPASMRQVTAVREIARDHAPDGLTVEVTGPTATVVDLTTETEHSVVRITVVTIGLIALILFLIYRAVAVPLIVLGVVGLGLGVGRAVVAWCGMQDFFAVSTFSGSFLTAIVLGAGTDYAVFLVARYHEQRRLGVEPTRAAAIAATRVGGVIAGSAVTVVLATLCMVFADLGFFNTTGPAVAVSIAVNLVLSLTLTPALLALAGRRGWAEPRASRAAGAWQRIAGLVAAHPVRMLTASLLPLAALAALFPLTDLSYDIRDPLPDTAESNQGYELLARHFPVNEVLPDYVVIQADHDLRNTRDLAVIERAAAAAEQHEGVALVRTVTRPTGEPITQASLAYQSGVVGDQLGKARRKVAQGSGGAQQLADGAGQLDDGAAQLADGAGQAVDGADRIAAASTRLSDGMTTLLDGADAAVAGAGGLRGGAADLADGLTTAADQVQVAVDSLGLVYDALATKSLTCGLDPACRRARAGLKQIWEAERDQLLPGLREAARGARSLAAGTGDLRAGLRQLRDGLAQARGGTEQLAAGQRTFADKLGELSGGADQLASGADQLRGGTDEVAASLPEFEEGLAAAVRHLRTTSREAGDPGAGGFYLPPTALANESFATASRLFVSDDGRTARIAVLGSTDAFGPAAAERSQEVLDIIDTSFNGTRLEDATVSVTGMAATNNDLRHYSVSDLEVIATGALVAVFLVLLLLLRSPVAAFALMATVVLSYGAAIGLSVLVWQYGLGIQLDWTVAAIAFVILVAVGADYNLLLTKRMHEEAPDGSASGIARATAATGGVITSAGVIFAVSMMALLAGRVTTIGQVGFTIAVGLLLDTFVVRSLLVPALATLLGPRLWWPQKPAPGAVPEAVPAQSQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLQ2</accession>
    <name>A0A0Q8VLQ2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 8">30S ribosomal protein S3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rpsC</name>
        <name evidence="13" type="ORF">ASE19_06555</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8 10">Belongs to the universal ribosomal protein uS3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894492.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55088">
        <property type="protein sequence ID" value="KRC55088"/>
        <property type="gene ID" value="ASE19_06555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1031902at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1140.32">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01309_B">
        <property type="entry name" value="Ribosomal_S3_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004044">
        <property type="entry name" value="KH_dom_type_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005704">
        <property type="entry name" value="Ribosomal_S3_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001351">
        <property type="entry name" value="Ribosomal_S3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036419">
        <property type="entry name" value="Ribosomal_S3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018280">
        <property type="entry name" value="Ribosomal_S3_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07650">
        <property type="entry name" value="KH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00189">
        <property type="entry name" value="Ribosomal_S3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54821">
        <property type="entry name" value="SSF54821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01009">
        <property type="entry name" value="rpsC_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50823">
        <property type="entry name" value="KH_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00548">
        <property type="entry name" value="RIBOSOMAL_S3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 10" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 8 10" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 8 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 8" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="KH type-2" evidence="12">
        <location>
            <begin position="38"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="213"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="237"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01309"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC55088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="276" mass="30329" checksum="3B69DA92141030CB" modified="2016-01-20" version="1">MGQKINPNGFRLGISTDHKSRWYADKLYKSYVGEDVAIRKLLSKGMERAGIAKVEIERTRDRVRVDIHTARPGIVIGRRGAEADRIRGELEKLTGKQVQLNILEVKNPEIDAQLVAQGVAEQLSGRVQFRRAMRKAMQTSMRSGAKGIRIQCSGRLNGAEMSRTEFYREGRVPLHTLRADIDYGFYEARTTFGRIGVKVWIYKGEVAGTRAERQAQAAARAGVPGRGGSGRPSRGGDRPTRGSRGDRPNRSDRTEAPAEAAAPEAAAVEPSTGTES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM09</accession>
    <name>A0A0Q8VM09_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FAD_binding_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08390</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895503.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54071">
        <property type="protein sequence ID" value="KRC54071"/>
        <property type="gene ID" value="ASE19_08390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1770293at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016628">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011777">
        <property type="entry name" value="Geranylgeranyl_Rdtase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000092">
        <property type="entry name" value="Polyprenyl_synt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00348">
        <property type="entry name" value="polyprenyl_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="SSF48576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02032">
        <property type="entry name" value="GG-red-SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_3" evidence="1">
        <location>
            <begin position="11"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="723" mass="77135" checksum="2412650384FF5ACE" modified="2016-01-20" version="1">MSATLEILHQAEIAVIGGGPAGATTAATLARLGRDVVVLDKDDFPRDKPCGDGLPRDAVAFLERFGLRQLVESAHPIDGSRLVIDQRVEKLKRYPSDSIGRCLTRYALDEALIREAIDSGAVLMKARADEFLYDSRGRAHLLKVRDASGTMGLVRAQHFVLATGAVSRLGNSLGLAGGSATIESYAARQYFETEGELDPYFDLHIPVVFDSRPMVGYAWIFPVGPRTANIGIGFGRGEGLPAVPSLRTLLDEFVAGLQRNKEASWGEIRAVSKVIGAPVGTNFRAGSCQHENIYCVGDAARMTDPFNGEGIYFALRGGEILGNEIDRAIRSHDATISIGTQYATNFPRLNQNVAPVARMLLSSMTRRVNNPSSPAHGDLLSFAREPFLKGLLDLIVDGRSVTLQSTPVWQTCASVNTELADALGAVESLAASDLTSDFPFVHEILFQNLRSEAGPFQAALFLASFQAFGGKPSRREVSLALALEMVRIAQRPLVQLGDDSQHTDQGKLNNALPILVSDYYVSQALWMSCRTLGAQTMKRLARLACNAGEGLMRELESPTPAQFLEATAQGAGMQGAVAARLGAEMAGADTASASAAEAYGSAIGTAYRISNDIRALLVDDHATGRRAGTITAAGPQPAPLVFAMAAAPDVTAMAKRACETNEFDALVRKVTEVGGIRMSIDACEGYVAEARRQLMSITAASGALDALARTPLELVREPVGQTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN41</accession>
    <name>A0A0Q8VN41_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">4-carboxymuconolactone decarboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23015</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892553.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58933">
        <property type="protein sequence ID" value="KRC58933"/>
        <property type="gene ID" value="ASE19_23015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1925754at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051920">
        <property type="term" value="F:peroxiredoxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029032">
        <property type="entry name" value="AhpD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003779">
        <property type="entry name" value="CMD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02627">
        <property type="entry name" value="CMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69118">
        <property type="entry name" value="SSF69118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMD" evidence="1">
        <location>
            <begin position="53"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="20818" checksum="0710D9C4B48BD4AD" modified="2016-01-20" version="1">MSGPLEDHGEPRIQPGGWRDVGPFVAGFARIAGRVQGTEPPAVFLTLGRHRRLFWGWLHFAGRLMPGGRLSRRESELVIVRVASRRGSSYELTQHRRLARRAGLAADEVAAIEAGETEGTFSARERLLLRATDELLATDDLGDPLWAELGEHFDDRERIEVLMLVGHYAMLATALHALRVRPDRPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN63</accession>
    <name>A0A0Q8VN63_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55122">
        <property type="protein sequence ID" value="KRC55122"/>
        <property type="gene ID" value="ASE19_04675"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="107"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="189"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="249"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="289"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="329"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="426"/>
            <end position="444"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="446" mass="48057" checksum="72FD3607DEEDAC44" modified="2016-01-20" version="1">MAAAIEGTVEAHGIGGQADLPISLGLAVSGAVAALVVSFTVLIVAWRNPRYDGRPLAGRPVWPWLDRLVSSTGWKVALRGIGVLLAAYTIAVAVAGQDNLTNPFFGIFYVWWWVGLVFASALLGPVWRAISPVRTLNALIARVAGSDPDAGLTAYPDRLGYWPAAIGLYAFVWMELAYKYPTELGSVRFWCAVYVGVMLVGGAIFGNRFYERADPFEVYSSMIAKLSPWARDEEGRLVLRSPLANLSTVPTLPGLVAVVGVLFGSTAFDSFRESTFWVKTYQDASISKVYLDNVALLVFVLVAGGLFSLASMLTPSGGEISRRELPRHYAHSIVPIVLGYIVAHYLTLFIDVGTQTLARASDPFGKGWDILGTAAVEPSYWFSYHATTLATVKVLAVVIGHVVAAVAAHDRALALLPKRDQVTGQLPLLFVMVTFTAGGLMLLFSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNA8</accession>
    <name>A0A0Q8VNA8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">VbhA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04215</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893028.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57011">
        <property type="protein sequence ID" value="KRC57011"/>
        <property type="gene ID" value="ASE19_04215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2090391at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1900723">
        <property type="term" value="P:negative regulation of protein adenylylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd11586">
        <property type="entry name" value="VbhA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.1050">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041535">
        <property type="entry name" value="VbhA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033788">
        <property type="entry name" value="VbhA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043038">
        <property type="entry name" value="VbhA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18495">
        <property type="entry name" value="VbhA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VbhA" evidence="2">
        <location>
            <begin position="11"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="61" mass="7016" checksum="1D45A5F70D20B716" modified="2016-01-20" version="1">MSVEITEVERRKRAVEDARRSSELEGSRSTEATRSDQDAYVRGEIDIEQLGKRVRSRYGLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP53</accession>
    <name>A0A0Q8VP53_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Peptidase M13</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_24070</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase M13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894035.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57401">
        <property type="protein sequence ID" value="KRC57401"/>
        <property type="gene ID" value="ASE19_24070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="305005at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd08662">
        <property type="entry name" value="M13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000718">
        <property type="entry name" value="Peptidase_M13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018497">
        <property type="entry name" value="Peptidase_M13_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042089">
        <property type="entry name" value="Peptidase_M13_dom_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008753">
        <property type="entry name" value="Peptidase_M13_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11733">
        <property type="entry name" value="PTHR11733"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01431">
        <property type="entry name" value="Peptidase_M13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05649">
        <property type="entry name" value="Peptidase_M13_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00786">
        <property type="entry name" value="NEPRILYSIN"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51885">
        <property type="entry name" value="NEPRILYSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M13_N" evidence="9">
        <location>
            <begin position="17"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M13" evidence="8">
        <location>
            <begin position="449"/>
            <end position="646"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF05649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC57401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="649" mass="72488" checksum="A7CC12557CD023B8" modified="2016-01-20" version="1">MSILDDARPGMDPAIRPQDDLFGHVNGAWLRDAEIPSDRSSWGPFVQLADQAEEDVRAIITELAASPDGDEDARKIADLYNSFMATDRVEAAGLAPAQPMIDAVAGLRDVRDVAAFLGEFERIGGYGLFGSYVDTDDRQSDRYLFHVVQGGLGLPDESYYREDKFADIREAYVAYLTRLLTLGGHVDPAGAAQRILELDTDLAKGHWERAETRDVQKTYNRLTADELKALCPGFDWDAYITNLGGRLSGPQATIAEVVVRQPSYLQHLSGVLEATPVEAWRDWFLSRVLRSAAPYLSEEFVQTNFDFYGRTLSGTPELRARWKRAVSFVEGAMGEAVGKEYVARHFPPTSKAMMDDLVANLLAAYRQSISKLDWMTEETKQRAYQKLDTFRPKIGYPERFRDYSALVVVPDDLVANAQAAAGFETDRQLAKIGAPVDRDEWFMLPQTVNAYYNPGTNEICFPAGILQKPFFAPDALEAENYGGIGAVIGHEVGHGFDDQGAQYDGEGNLNDWWTPDDKAAFEVKSKALISQYDGFAPRNLPDEKVNGALTVGENIGDLGGLTIAHTAFQIARGGNASVEDRTKLFFNWAYVWRTKRRLEQEQQYLTIDPHSPPEFRANIVRNLDEFHEVFGTAPGDGLWLDPEQRVRIW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP86</accession>
    <name>A0A0Q8VP86_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23740</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893981.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57347">
        <property type="protein sequence ID" value="KRC57347"/>
        <property type="gene ID" value="ASE19_23740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1356861at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="244" mass="24965" checksum="1EB09E69D0D0B6A1" modified="2016-01-20" version="1">MTTAPARAQRFTDRRVVVTGAAGGVGQVVAGLFREEGARVVATDVAPADGVVPCDLRDDSARDGFVADALAELGGLDVLCNVAGIQQFAEIGKLTPDGLRRHFDINALAPLMLTQAFAEALVASKGNVVSVTSISAVMGQPYNAQYCASKAALLLGMRSLAVELGTRGVRVNCVSPGGIATPMIEAAAAGLPADANWDLVAKSTSVIPGFMPPVDVAESLMFLASDAAASITGANLVVDRGVVW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPW8</accession>
    <name>A0A0Q8VPW8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05555</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894162.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54919">
        <property type="protein sequence ID" value="KRC54919"/>
        <property type="gene ID" value="ASE19_05555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2023468at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="47"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="78"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="120"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="166"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="195"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="245"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="273" mass="28973" checksum="A15913FCEE7E71BA" modified="2016-01-20" version="1">MSTATLVPTPAAAVPETTRTRPAPAPIPFRRVLQVELRKMFDTRTGFWLMASIVIASVIATVLTIILGNRDDLSFDAFAAAVGSPMSIVLPVIGVLAVTSEWSQRTALTTFTLVPSRPRVLAAKLVDAVVIGAISMLVALGIGAVGNLVTAMITGNDAVWNISAGTFAQIVLANELGMLLGFALGLLFRNSPAAIVGYFVIIMVLPGLSGALAAAQPWWSDNAGWFELNDTRYLLFDGSLTSTDWAQLGVTSILWIVLPLLAGLRLVLRSEVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ20</accession>
    <name>A0A0Q8VQ20_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7 8">Pantothenate kinase</fullName>
            <ecNumber evidence="4 7 8">2.7.1.33</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Pantothenic acid kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">coaA</name>
        <name evidence="11" type="ORF">ASE19_00370</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7 8">
            <text>(R)-pantothenate + ATP = (R)-4'-phosphopantothenate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16373"/>
            <dbReference type="ChEBI" id="CHEBI:10986"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29032"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.33"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7 8">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 1/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7 8">Belongs to the prokaryotic pantothenate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.33" evidence="4 7 8"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896812.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59528">
        <property type="protein sequence ID" value="KRC59528"/>
        <property type="gene ID" value="ASE19_00370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1793376at2"/>
    <dbReference type="UniPathway" id="UPA00241">
        <property type="reaction ID" value="UER00352"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004594">
        <property type="term" value="F:pantothenate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02025">
        <property type="entry name" value="PanK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00215">
        <property type="entry name" value="Pantothen_kinase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004566">
        <property type="entry name" value="PanK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006083">
        <property type="entry name" value="PRK/URK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10285:SF139">
        <property type="entry name" value="PTHR10285:SF139"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00485">
        <property type="entry name" value="PRK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000545">
        <property type="entry name" value="Pantothenate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00554">
        <property type="entry name" value="panK_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 7 8" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PRK" evidence="10">
        <location>
            <begin position="101"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="106"/>
            <end position="113"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00015080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00215"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC59528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="328" mass="37000" checksum="4B319B5AB339FBFF" modified="2016-01-20" version="1">MVTAAETPGAHGEESPRESSPYVELDRATWAMLASETESPLTSDEVARLRGIGDQLDLAEIRDVYLPLSRLLSLRVRAASALHREQQEFLHGLTPPRTPFVIGLAGSVAVGKSTAARVLQQMLARWPEHPNVALVTTDGFLYPNAELVKRGLLERKGFPESYDRKALMRFVVDLKSGKDEVEAPVYSHLVYDVVPDEKVAVKHPDIVIIEGLNVLQPPRVREDGRTRLGLSDFFDFSIFVDANTNHIREWYVDRFLHLRETAFRDPDSYFAKYAALSHDTAVDEARRIWDTINGPNLSQNVLPTRSRATLVLRKSADHSVDWVRLRKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ36</accession>
    <name>A0A0Q8VQ36_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00475</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896796.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59544">
        <property type="protein sequence ID" value="KRC59544"/>
        <property type="gene ID" value="ASE19_00475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1713977at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017517">
        <property type="entry name" value="CHP03083_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010872">
        <property type="entry name" value="MDMPI_C-term_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024344">
        <property type="entry name" value="MDMPI_metal-binding"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07398">
        <property type="entry name" value="MDMPI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11716">
        <property type="entry name" value="MDMPI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03083">
        <property type="entry name" value="TIGR03083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MDMPI_N" evidence="2">
        <location>
            <begin position="13"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="MDMPI_C" evidence="1">
        <location>
            <begin position="142"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07398"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="224" mass="23792" checksum="2B944C753549C6AB" modified="2016-01-20" version="1">MEWIELLESTTGRFADVLATGDLGADVPTCPGWTLADLGEHTRWTHAWAAHAVTAGTPDGDSPAPGLDRDALVAGYRDAAGVLLDALRSTAPDAPAWTFGTDRTSGFWRRRQVHEVTMHLYDALASQHRTDSWGVGPELGWDGVDEVATVFYPRQVRLGRTDPLAAPVRLTATDLGRSVVLAPAGEEAEVELAAPAAELLLVLWGRLPATGPAAEVLAQASVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ50</accession>
    <name>A0A0Q8VQ50_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05940</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894091.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54983">
        <property type="protein sequence ID" value="KRC54983"/>
        <property type="gene ID" value="ASE19_05940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="20"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="209" mass="23392" checksum="EC93F69F544F1C2B" modified="2016-01-20" version="1">MSDERLWARMVDRRSVNRGDQRRAALLEALDELLREQTLEEVNVAEISRKAGVTRSAFYFYFESKATAVLALMAELYDDASDATDLLVKAEGEPRARIRHVITTLFDSVDRTPHTYRALLEARATSAAVRELWEAGRAEFAEMTAEMIERERALGHAQPGADAHVLAAVLLDLNDHAVERHAMGVGPEREAHIDAITHIWIQSIYGSPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ81</accession>
    <name>A0A0Q8VQ81_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01105</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896688.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59653">
        <property type="protein sequence ID" value="KRC59653"/>
        <property type="gene ID" value="ASE19_01105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1356861at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="256" mass="25636" checksum="E170851D6B2AEE36" modified="2016-01-20" version="1">MTQDFTGKTAIVTGAARGIGLTIARTLSDRGANVVVSDIDEGAAKAAADSLPRAVAVACDVTDEDQVTALVDTAVATYGGLHVMVPNAGVATVAPIVETDLAAWRRVTSVNLDGVFLSLRYAAPAIIASGGGAIVNIASVTANNGSALIASYAAAKAGVVNLTKTAAVELRDHGVRVNAVLPGFIETELVTEQVGNFEAALGLPAGGFSALIEMKQGRWGTVQEVADAVAFLASDAAGFCSGSGLVLDGGLDAALI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQH6</accession>
    <name>A0A0Q8VQH6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5 family acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01880</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892626.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56608">
        <property type="protein sequence ID" value="KRC56608"/>
        <property type="gene ID" value="ASE19_01880"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2055010at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="175" mass="19438" checksum="A59BA155A34C5291" modified="2016-01-20" version="1">MTGQPTFRAATEDDVDAIVTLVHSAYRGDSSRSGWTTEADLLDGQRTGPDDVLATITAPDSVLVLAESDGALAACCHVQRRGSRCYFGMFAVDPTRQGGGLGKQVMAYAEELARSRWACSVMEMTVIRQRTDLIAFYERRGYVDTDRRTPFPYGDERFGLPRRDDLEFTLLEKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQS6</accession>
    <name>A0A0Q8VQS6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4439 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02985</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892816.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56797">
        <property type="protein sequence ID" value="KRC56797"/>
        <property type="gene ID" value="ASE19_02985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1820696at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029447">
        <property type="entry name" value="DUF4439"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14530">
        <property type="entry name" value="DUF4439"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4439" evidence="1">
        <location>
            <begin position="15"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="147" mass="15268" checksum="AAA35B5A96698F76" modified="2016-01-20" version="1">MTTTSPEAADPATDALQTTLAAEHAAVFVYGALGAQASRSRQPALFGRVTAAYRLHRTRRDELLALVEAAGADPVAAEPGYVLPPDLGTARAINARALKLEQDAASAYAFLVASSTGTTRSWAVEALLDAAVRGMGFGGRPEQFPGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQV7</accession>
    <name>A0A0Q8VQV7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">ATP synthase subunit beta</fullName>
            <ecNumber evidence="11">7.1.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">ATP synthase F1 sector subunit beta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">F-ATPase subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">atpD</name>
        <name evidence="13" type="ORF">ASE19_03195</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>ATP + 4 H(+)(in) + H2O = ADP + 5 H(+)(out) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:57720"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.1.2.2"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cell membrane</location>
            <topology evidence="11">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 11">Belongs to the ATPase alpha/beta chains family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.2.2" evidence="11"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892848.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56829">
        <property type="protein sequence ID" value="KRC56829"/>
        <property type="gene ID" value="ASE19_03195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="430176at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1140.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01347">
        <property type="entry name" value="ATP_synth_beta_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005722">
        <property type="entry name" value="ATP_synth_F1_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020003">
        <property type="entry name" value="ATPase_a/bsu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004100">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036121">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024034">
        <property type="entry name" value="ATPase_F1/V1_b/a_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02874">
        <property type="entry name" value="ATP-synt_ab_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50615">
        <property type="entry name" value="SSF50615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01039">
        <property type="entry name" value="atpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00152">
        <property type="entry name" value="ATPASE_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="5 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 11" id="KW-0139">CF(1)</keyword>
    <keyword evidence="11" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 11" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 11" id="KW-0813">Transport</keyword>
    <feature type="domain" description="AAA" evidence="12">
        <location>
            <begin position="161"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="169"/>
            <end position="176"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC56829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="484" mass="52389" checksum="8D82EAA170382998" modified="2016-01-20" version="1">MTATVEETTASGAASVGRIARVIGPVVDIEFPTDAMPEIYNKLEAEITLEGQTSVLPLEVAQHIGDGMVRAISLKPTDGLVRGQSVTDTGGPITVPVGDVTLGKVFNATGDFLNLEAGETVEVNERWGIHRKAPAFDQLESKTQMFETGIKVIDLLAPYVTGGKIGLFGGAGVGKTVLIQEMIARVAKNHGGVSVFAGVGERTREGNDLIVEMQEAGVFDKVALVFGQMDEPPGTRLRVALSALTMAEYFRDVQGQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGTLQERITSTRGRSITSMQAIYVPADDYTDPAPAATFAHLDATTELSREIASLGIYPAVDPLTSTSRILDPQYIGQAHYDCAVRIKQILQRNKELQDIIAILGVDELSEEDKVIVSRARRIQRFLSQNTYVAKQFTGIEGSTVPVADTIEAFNKIADGEYDHVAEQAFFMCGGLDDVERNWAEIQKSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR17</accession>
    <name>A0A0Q8VR17_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01030</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896703.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59638">
        <property type="protein sequence ID" value="KRC59638"/>
        <property type="gene ID" value="ASE19_01030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1977933at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="105"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="130" mass="13760" checksum="D21A34C70F459525" modified="2016-01-20" version="1">MSEPKQDDRPSTLAAVREALDEAEGKDCVGALPYLREAADRLTDLIDEAMATAVLTGQASLRGAGAQAGLTENAVGPRLARTRTLGAYADDRGRVTAAGVERAKYDLETGQPRQPGAAPAPMRFKPRRPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWW7</accession>
    <name>A0A0Q8VWW7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23640</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893957.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57751">
        <property type="protein sequence ID" value="KRC57751"/>
        <property type="gene ID" value="ASE19_23640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040611">
        <property type="entry name" value="TetR_C_35"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18556">
        <property type="entry name" value="TetR_C_35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="12"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="20428" checksum="9044363D2C4C70EE" modified="2016-01-20" version="1">MSSPAFYDELRALRLERVLDASVAIITEDGWDRLSMTKVAQRSGVPRQSLYKEIGTKSELGEAVVHRELERFLSGVRDSIADHPASEEEGLGAAARFVLEHGETNAVLKAILRPGHAPDLLELITVRPDTVLNRACQAVHDALDGGSEAMVESMVRLTISHLLQPTVSIDEAVHRIRRTIRGFDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYZ4</accession>
    <name>A0A0Q8VYZ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00615</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896770.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59570">
        <property type="protein sequence ID" value="KRC59570"/>
        <property type="gene ID" value="ASE19_00615"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010035">
        <property type="entry name" value="Thi_S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34472">
        <property type="entry name" value="PTHR34472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="SSF54285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01683">
        <property type="entry name" value="thiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="67" mass="7004" checksum="919698895909E5C9" modified="2016-01-20" version="1">MTITWNGASVRTPHTTLADLLHERLGEPRPEGVAVAVNGEVVPRSTWPVASLTDGDVVDVVTAVQGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZA6</accession>
    <name>A0A0Q8VZA6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_01520</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59824">
        <property type="protein sequence ID" value="KRC59824"/>
        <property type="gene ID" value="ASE19_01520"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005171">
        <property type="entry name" value="Cyt_c_oxidase_su4_prok"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03626">
        <property type="entry name" value="COX4_pro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="26"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="55"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="75" mass="8183" checksum="ECE7365CE9B2533B" modified="2016-01-20" version="1">MVLATVVSWALGTDHGFVESTRTASLIVLVVAFVKVRFVGLYFMELKDAPLPLRALIEAYCLVVCCLTIGFYLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W1J7</accession>
    <name>A0A0Q8W1J7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00770</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896750.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59591">
        <property type="protein sequence ID" value="KRC59591"/>
        <property type="gene ID" value="ASE19_00770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1835483at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006470">
        <property type="term" value="P:protein dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00143">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015655">
        <property type="entry name" value="PP2C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13832">
        <property type="entry name" value="PTHR13832"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="1">
        <location>
            <begin position="10"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="281" mass="29230" checksum="B6FEDAD718B247E6" modified="2016-01-20" version="1">MNHLQQVELHHGAATDVGMVREANEDAYLADPPVFVVADGMGGHDRGDVASAIVIEEFTRLASDGYDAERGAEVVAATLQAVQDRILAFDAEQRAGGADLTFSAGTTAVVALLVDSVSGPVWLLANVGDSRAYRFSEGELEQVSVDHSMVQELVDAGQITEAAAATHPNRNVITRALGGSGLGGVSGEADYFLLPLAAAERLLLCSDGVSGMLSHDQIRDLLDANEDPRDAAEKVVAAAVAAGGHDNATAVVVDVVGLVHTEPYDADAQRLSLEQKLGALP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W1P2</accession>
    <name>A0A0Q8W1P2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01035</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896702.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59639">
        <property type="protein sequence ID" value="KRC59639"/>
        <property type="gene ID" value="ASE19_01035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1462833at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="189"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="217" mass="23501" checksum="B1737B52AF5EE1A9" modified="2016-01-20" version="1">MTRADLTHLYFLLDRSGSMQSIKTDTEGGFAAFIAEQRAHAGECRVTLAQFDNVYEVVHAGVPVAEVPPLDLQPRGSTALLDAMGRLVTTAGAELDALPEDERPGTVIVAIMTDGHENASQEWTHPAIKALVEQQTNDYAWQFLYMGADQDAIEVGTSLGVAAGASVTYGRGRSRDVLAMTSQKLGKLRGDRMAAPASAPAPMMDDYSEEDRRFVRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W240</accession>
    <name>A0A0Q8W240_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase</fullName>
            <ecNumber evidence="3">4.2.1.17</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01745</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.17" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896572.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59767">
        <property type="protein sequence ID" value="KRC59767"/>
        <property type="gene ID" value="ASE19_01745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004300">
        <property type="term" value="F:enoyl-CoA hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="27622" checksum="9CCB5C6DCF574A4C" modified="2016-01-20" version="1">MSSADGVPGVLVERHGRVALVQLNRPDQLNALSPAMMDELLAVLREIDVDPEVGAVVIAGHDRAFVAGADIKGMRERPLHDVLAAPASRFWMRLAEIEVPLVAAVSGAALGGGCELALACDLVVAAETATFSQAEIKVGIMPGGGGTQRLARTIGKHRAMELVLTGRPVTAHEAHALGFVNRLVDPAAWREEALALAQEVAAGPPIAVRLAKRAVLAAEEGSLSLGMLTERKLMELAFASEDRVEGMTAFVERRPPQWTGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM45</accession>
    <name>A0A0Q8UM45_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Alkaline phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_19600</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895861.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46085">
        <property type="protein sequence ID" value="KRC46085"/>
        <property type="gene ID" value="ASE19_19600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="165142at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07389">
        <property type="entry name" value="MPP_PhoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018946">
        <property type="entry name" value="PhoD-like_MPP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038607">
        <property type="entry name" value="PhoD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032093">
        <property type="entry name" value="PhoD_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09423">
        <property type="entry name" value="PhoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16655">
        <property type="entry name" value="PhoD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359205" evidence="1">
        <location>
            <begin position="40"/>
            <end position="529"/>
        </location>
    </feature>
    <feature type="domain" description="PhoD_N" evidence="3">
        <location>
            <begin position="55"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="PhoD" evidence="2">
        <location>
            <begin position="162"/>
            <end position="510"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="529" mass="57554" checksum="8967F02F2C01314E" modified="2016-01-20" version="1">MPSDFSAPSSRRALLRGAALVAGTAATSGLLAGQTPARAYAAPLLVRGDRPVLPLGVQSGDVRPGSAVLWSRADRPSRLVAEISRDASFRRVRTVRGPVVTPETDFTGQLVLDDLPEGTDLHYRIRAVDLHDHRATSAPTVGRLRTAPGRRDDVRFLWSGDIAGQGWGVNPAYGGFRIADAMRARDADFFLCSGDNVYADGPVQSSVALPDGSTWTNLVIPEKTKVAETLAEYRGQYRYNLMADNWRAFLAETSQVTQWDDHEVRNNWFPGQVLDDSRYTEKRIDVLAARAHQAFHDYVPVAPISPDSEGRVYRVVRYGRHVDLFVLDMRTHKDPNTGNREPSGDGGVLGEEQTAWLIRELQRSRATWKVIAADLPLGLVVPDGASAQEGLAQGEPGAPLGREIDIARVLTALSRAGIRNHVWLTADVHYTAAHHYSPDRASYQDFDPFWEFVSGPLNAGAFGPNALDGTFGPVADFVAAPPSPNASPAQGFQFFGEVEVDAASGRLTVTLRDVEGAALYTRTLDPAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM84</accession>
    <name>A0A0Q8UM84_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895900.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46124">
        <property type="protein sequence ID" value="KRC46124"/>
        <property type="gene ID" value="ASE19_19835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2040098at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13443">
        <property type="entry name" value="HTH_26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="68" mass="7520" checksum="BF199A8ECA12D9AA" modified="2016-01-20" version="1">MAIVVRIDVELARRKMSVGEFAERVGLTPANVAVLKNGRAKAVRFSTLEAMCRVLECQPGDLLEFVED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMD7</accession>
    <name>A0A0Q8UMD7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_19680</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the glycosyltransferase 87 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895876.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46100">
        <property type="protein sequence ID" value="KRC46100"/>
        <property type="gene ID" value="ASE19_19680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1362354at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016758">
        <property type="term" value="F:hexosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018584">
        <property type="entry name" value="GT87"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09594">
        <property type="entry name" value="GT87"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="66"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="102"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="156"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="186"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="248"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="317"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="357"/>
            <end position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="394" mass="41799" checksum="BCBC9574DBCCECD5" modified="2016-01-20" version="1">MESRLARRLLAVLALGVGLWCALLAWRWSWFIDLRVYELGAGALFGGDLYGVRFHVADLPFTYPPFAAVLMLPLAVLPTWLSAFLWSLACVVVLARVVDLTLRACGTTPTGLLLPAVVAVALLAEPVWSTFSFGQVNLFLMAAVLADVLRPERKHAGWLVGLVAGIKLTPLFFVAFLLVIGRRRAAGTAVASFAATVLVGAVAAPRASWAYWTDVLWDPGRVGGVEYAGNQSVLGILSRALGHEAPTLLWFAVAGTTAAAALLAAALVWRSASPAARPLAACTAAYGMLLASPISWDHHWVWLVPTAIALWHSGLSRARVVAGVVAVVAFSRAIWWAPFRNGKEYDWGLFASISGNAYVLVALLLIGATLVWGVAAARATRGAGSVAEGDVLLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMH3</accession>
    <name>A0A0Q8UMH3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">IclR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_20285</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_028655929.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46202">
        <property type="protein sequence ID" value="KRC46202"/>
        <property type="gene ID" value="ASE19_20285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="370329at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="7"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="67"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="240" mass="25075" checksum="96A2C237042C4B63" modified="2016-01-20" version="1">MDNSSGVGVLDKAALVLTALESGPATLAGLVAGTGLARPTAHRLAVALEHHRLVARDMQGRFVLGPRLAELSAAAGEDRLLATAGPVLARLRDITGESAQLWRRQGDHRVCVAAAERPSGLRDTIPVGSQLTMRAGSAAQVLLAWDDPERIHRGLQNAAFSAAELSAIRRRGWAQSVGEREQGVASVSAPVRSPGGKVIAAVSVSGPLERLSRQPGRMHAPAVLAAAERLSESLRRAAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMJ3</accession>
    <name>A0A0Q8UMJ3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ANTAR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_20425</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46222">
        <property type="protein sequence ID" value="KRC46222"/>
        <property type="gene ID" value="ASE19_20425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1958442at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005561">
        <property type="entry name" value="ANTAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012074">
        <property type="entry name" value="GAF_ANTAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03861">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036625">
        <property type="entry name" value="GAF_ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01012">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50921">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="ANTAR" evidence="3">
        <location>
            <begin position="168"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="246" mass="26542" checksum="18253669CC14FCD1" modified="2016-01-20" version="1">MGTASGVKPDHTTIAAALTEAAQSINSHRSLDQTLDAIVRAAQQTVPGFDHVGISVVHGNGNRRIETRAGTGRIVWDVDELQYKLAEGPCYDAIRHGGVTVMDDVETEDRWPQYVEEVRQLGLRAQMGLQLYSDGTTLGGLNFYAAEPGVDPDAVQLGELFAAHAAIALGRARHEHQLNESVASRQAIGTAVGIVMERYRITEDRAFQFLVRASSTGNVKLRSIAQQVVDDANAQFQPSGDTPSHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN73</accession>
    <name>A0A0Q8UN73_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Transcription-repair-coupling factor</fullName>
            <shortName evidence="8">TRCF</shortName>
            <ecNumber evidence="8">3.6.4.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">mfd</name>
        <name evidence="11" type="ORF">ASE19_21560</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">In the C-terminal section; belongs to the helicase family. RecG subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">In the N-terminal section; belongs to the UvrB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.-" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896190.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46420">
        <property type="protein sequence ID" value="KRC46420"/>
        <property type="gene ID" value="ASE19_21560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="234717at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000716">
        <property type="term" value="P:transcription-coupled nucleotide-excision repair, DNA damage recognition"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00969">
        <property type="entry name" value="TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036101">
        <property type="entry name" value="CarD-like/TRCF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003711">
        <property type="entry name" value="CarD-like/TRCF_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004576">
        <property type="entry name" value="Mfd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037235">
        <property type="entry name" value="TRCF-like_C_D7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005118">
        <property type="entry name" value="TRCF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041471">
        <property type="entry name" value="UvrB_inter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02559">
        <property type="entry name" value="CarD_CdnL_TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03461">
        <property type="entry name" value="TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17757">
        <property type="entry name" value="UvrB_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01058">
        <property type="entry name" value="CarD_TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00982">
        <property type="entry name" value="TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141259">
        <property type="entry name" value="SSF141259"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143517">
        <property type="entry name" value="SSF143517"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00580">
        <property type="entry name" value="mfd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="3 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="9">
        <location>
            <begin position="641"/>
            <end position="802"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="10">
        <location>
            <begin position="820"/>
            <end position="977"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC46420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1175" mass="128759" checksum="6CE6453E3E316B7F" modified="2016-01-20" version="1">MHLAGIADAVLADPALAASLEQASRAQQPTGELTGPEALRPFLVAGLARSGRPVLVVTATTREAEQLVAELGDLVDAGGVAYYPSWETLPHERLSPRSDTVGRRLAVLRRLCHPGAPGTTAAPVQVLVAPVRSVLQPQVKGLGDLTPVELSVGDTADLDDLVAGLVGAAYSRVDLVERRGEFAVRGGIVDVFPPTEEHPLRVELFGDEVDEIRSFAVADQRTIAKVDRLWAPPCRELLLTDDVRARAAELGRTHPQLLEITDKLAQGIAVEGMEALIPALVDELELLVDLLPEDTQVLVLDPERARARAHDLVATSEEFLAASWATAASGGQAPVDLQAASYHQLGDVRSHARERGQSWWTFSPFGLDDDDANPGHSAAQPAPSYRGDVEKAFTDIARWHGAGHQVAVVHAGHGPAQRMVEALGEKDVPARLVESIPSGATLDPAVVTITCGALAHGLVDETRKLVVLTGEDVVGAKASTRDKGAMPVRRKRQIDPLELKAGDFVVHEQHGVGRFVEMKQREVQGAVREYLVLEYGPSKRGGPPDRLFVPADTLDQVTRYVGGEQPSLDRLGGGDWTKRKNRARKAVREIAAELIKLYAARQATQGHAFGPDTPWQRELEDAFPFHETPDQLTTVDEVKGDMERTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVNQHLDTFSERMSGFPVILKPLSRFQTDKEAAETMAGLADGTVDVVVGTHRLFNADTKFKDLGLIIVDEEQRFGVEHKEAMKRLRTSVDVLSMSATPIPRTLEMAITGIREMSTITTPPEERHPVLTYVGGYEDRQVVAAVRRELLRDGQVFYIHNRVSSIEKAAARIRELVPEARVATAHGQMGEHQLEQVMLDFWEKRFDVLVCTTIVESGIDVSNANTMIIERSDTLGLSQLHQLRGRVGRSRERAYAYFLYPTEKPLTETAHERLATLAQHSDLGGGMAIAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVRDFRSDGEVPEQLEEVRIELPVEAHLPHDYIPSERLRLEIYKRLAEVRTDADVDEVLAELQDRYGEPPEQVAALLLVARFRARVRQAGVREVTTVGKNVRFHPVVLPESRTIRLNRLYPKSIVKHQLESVLVPRPGIPGRTGTPIEGVALLEWARLVLDSVIDPKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNC1</accession>
    <name>A0A0Q8UNC1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896256.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46486">
        <property type="protein sequence ID" value="KRC46486"/>
        <property type="gene ID" value="ASE19_21950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2121499at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359240" evidence="1">
        <location>
            <begin position="31"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="32690" checksum="3CD4166D24F34FD5" modified="2016-01-20" version="1">MHPTFRHAALATLATACGAATLLPLAPAGAAAPTRIHAEYWGVTCVAGLGGGQTLFLTGGGTTDGAEGGVGAFVEASDGSFVVDGEASSFAFGSTFSATVPLGAKTFAISADAAQGPRTTEAVDERDGNRWTKGTTTVADVLLTGVVATYDGRPVVLGENACTGDINGFDVRTTNPAGYVSRSGDLGSDICDLGGLADGQVRLGGVLPDAYVEVVLDHGTESVEKAQGELRLRAGRGSLRTEVVDLVTEEVRTTATIDVDLQRSGHTVRTVESADGITERRTVTPYLATIEVTLADGRHGRTTCAAASVTSQLQVRPTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNG6</accession>
    <name>A0A0Q8UNG6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Isocitrate dehydrogenase [NADP]</fullName>
            <ecNumber evidence="1">1.1.1.42</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Oxalosuccinate decarboxylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_22295</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-threo-isocitrate + NADP(+) = 2-oxoglutarate + CO2 + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19629"/>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.42"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="4">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="4">Binds 1 Mg(2+) or Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the monomeric-type IDH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.42" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896310.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46542">
        <property type="protein sequence ID" value="KRC46542"/>
        <property type="gene ID" value="ASE19_22295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="222705at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004450">
        <property type="term" value="F:isocitrate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006097">
        <property type="term" value="P:glyoxylate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004436">
        <property type="entry name" value="Isocitrate_DH_NADP_mono"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36999">
        <property type="entry name" value="PTHR36999"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03971">
        <property type="entry name" value="IDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009407">
        <property type="entry name" value="IDH_monmr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00178">
        <property type="entry name" value="monomer_idh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0329">Glyoxylate bypass</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 5" id="KW-0521">NADP</keyword>
    <keyword evidence="1 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="123"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="73"/>
            <end position="78"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="536"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="573"/>
            <end position="574"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="578"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="589"/>
            <end position="591"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="638"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="site" description="Critical for catalysis" evidence="2">
        <location>
            <position position="246"/>
        </location>
    </feature>
    <feature type="site" description="Critical for catalysis" evidence="2">
        <location>
            <position position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR009407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR009407-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR009407-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR009407-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR009407-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="729" mass="77494" checksum="CE38CE918FD39F1A" modified="2016-01-20" version="1">MSSIIYTHTDEAPLLATYSFLPIVEAFAAKAGVAFETRDISVAARILAQFGLADDALTELGELAKTPEANIIKLPNISASIPQLKAAVKELQAQGFAVPDYPENPTTDEEKEIRAKYDKVKGSAVNPVLREGNSDRRAPASVKNYAKTHPHTNKPFAEGSKTNVATMGAHDFASNEKSVTLAGDDVLSIVLETEAGETVVLKEGLKVLAGEIVDATKMSASHLRAFLQNALAEAKAQDVLFSVHLKATMMKVSDPIIFGHVVKAYFADVFAQYGDQLAAAGLSANDGLGAILAGLDALENGAEIKAAFDAALAAGPRLSYTNSDKGITNLHVPSDVIVDASMPALVRNGGRLWGADGGEDDTLAVIPDSSYAGVYQAVLDDVKKNGPLDPATIGTVPNVGLMAQAAEEYGSHDKTFEIAAAGTVRVVASNGDVLIEHDVEAGDIWRACQTKDIPVQDWVKLAVSRARASQTPAIFWLNESRAHDAELIKKVNAYLPEHDTEGLTIEILAPTLATAYSLERMRKGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLIAGGGLFETGAGGSAPKHVQQLVEENYLRWDSLGEFFALVPSLEKYAEQAGAPAAQVLADALDRATGTFLNEDRSPGRKLGTTDNRGSHFYLALYWAEELANQSADADLAAAFKPLAETLRANEDKIAAELIAVQGSPADIGGYYYPDAEKTSAVMRPSTTLNEVLAGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNI6</accession>
    <name>A0A0Q8UNI6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Succinate--CoA ligase [ADP-forming] subunit alpha</fullName>
            <ecNumber evidence="2">6.2.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Succinyl-CoA synthetase subunit alpha</fullName>
            <shortName evidence="2">SCS-alpha</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">sucD</name>
        <name evidence="7" type="ORF">ASE19_22355</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 5">Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 5">
            <text>ATP + CoA + succinate = ADP + phosphate + succinyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:17661"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.2.1.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 5">Heterotetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the succinate/malate CoA ligase alpha subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.5" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896320.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46552">
        <property type="protein sequence ID" value="KRC46552"/>
        <property type="gene ID" value="ASE19_22355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1081709at2"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004775">
        <property type="term" value="F:succinate-CoA ligase (ADP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01988">
        <property type="entry name" value="Succ_CoA_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017440">
        <property type="entry name" value="Cit_synth/succinyl-CoA_lig_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033847">
        <property type="entry name" value="Citrt_syn/SCS-alpha_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005810">
        <property type="entry name" value="CoA_lig_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005811">
        <property type="entry name" value="CoA_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02629">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00549">
        <property type="entry name" value="Ligase_CoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001553">
        <property type="entry name" value="SucCS_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01019">
        <property type="entry name" value="sucCoAalpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01216">
        <property type="entry name" value="SUCCINYL_COA_LIG_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00399">
        <property type="entry name" value="SUCCINYL_COA_LIG_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1 2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="CoA_binding" evidence="6">
        <location>
            <begin position="4"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Coenzyme A binding" evidence="2">
        <location>
            <begin position="17"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Coenzyme A binding" evidence="2">
        <location>
            <begin position="105"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-phosphohistidine intermediate" evidence="2 3">
        <location>
            <position position="254"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared with subunit beta</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001553-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="298" mass="30621" checksum="F2E4BC974112C5F4" modified="2016-01-20" version="1">MSIYLNKDSKIIVQGITGGMGAKHTALMLDSGAQIVGGVNSRKAGTTVTHKDHDGNDVELPVFGTVAEAMKETGADVSVLFVPPAFTKDAAIEAIDAEMPLIVVITEGVPVQDTAEVWSYLQGKSTRMIGPNCPGIITPGESLAGITPHTIAGKGPVGLVSKSGTLTYQMMYELRDFGFSTAIGIGGDPIVGTTHIDALQAFEDDPETKLIVMIGEIGGDAEERAAAYIKDNITKPVVGYVAGFTAPEGKTMGHAGAIVSGSAGTAAAKQEALEAVGVKVGKTPSATAALAREILQSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8URV6</accession>
    <name>A0A0Q8URV6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Type II secretion system protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_21500</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896179.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46409">
        <property type="protein sequence ID" value="KRC46409"/>
        <property type="gene ID" value="ASE19_21500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1126926at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018076">
        <property type="entry name" value="T2SS_GspF_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00482">
        <property type="entry name" value="T2SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="74"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="218"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="251"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSF" evidence="7">
        <location>
            <begin position="112"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="284" mass="30583" checksum="C9FFFE9FE886963E" modified="2016-01-20" version="1">MGALVGLGVGVGLLLVWSAFQQPREERPARPRRGRTGELLAEAGLRDVSPRSLVALCLGAGLTAAVLVLGTTRAVPVALVFGVLAGYLPYAVVKGRARRRQRELAEVWPEAVDDLASAVRAGMSLPDAVAALAVRGPEPLRPAFDAFALDYQVSGRFGDCLDRLKDRLADPVGDRVVEGLRIAREVGGGQLGRLLRNLSSYLRDDLRTRSELEARQSWAVNGARVGVAAPWVVLLVMSTQRTVIERYQSPAGAVVLTLGAVVCVVAYRLMTRLGRLPVEHRVLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUC2</accession>
    <name>A0A0Q8UUC2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PlsC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17905</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893198.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48796">
        <property type="protein sequence ID" value="KRC48796"/>
        <property type="gene ID" value="ASE19_17905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1756450at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="218"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="PlsC" evidence="2">
        <location>
            <begin position="53"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="240" mass="26205" checksum="806139825C27F0BE" modified="2016-01-20" version="1">MATTNEEAHRIAREEGVSGPLYLVVKYLAAIVFRILCGFTATGKENVPKKGPVVIVPNHKSFWDPFFVAIVLRRPVHFMGKAEHFEGPMARIFLRLGAFPVRRGASDEEALETSRAILRRGDALALFPEGTRVREEGLGAPKRGAARLAIEAGAPIVPATITGTEKRRWPLPRRVRIVFGTPVSVEGLEATPEDAASAIGAAWPQVTEEYTRWQNRPGVIAAGAAALGLGAWLGWRRRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUG8</accession>
    <name>A0A0Q8UUG8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aspartate ammonia-lyase</fullName>
            <ecNumber evidence="3">4.3.1.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">aspA</name>
        <name evidence="3" type="ORF">ASE19_18090</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.1.1" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893231.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48830">
        <property type="protein sequence ID" value="KRC48830"/>
        <property type="gene ID" value="ASE19_18090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="734949at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008797">
        <property type="term" value="F:aspartate ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018951">
        <property type="entry name" value="Fumarase_C_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10415">
        <property type="entry name" value="FumaraseC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lyase_1" evidence="1">
        <location>
            <begin position="19"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="domain" description="FumaraseC_C" evidence="2">
        <location>
            <begin position="414"/>
            <end position="466"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="476" mass="49342" checksum="D694C5A3130743C1" modified="2016-01-20" version="1">MTTTDAPTTRTEHDSLGPHEVPATAYWGVHTARAVQNFPISGTPVGAHRELVAALGAVKLAAARANHDLGLLDDRRHDAIAAAAQEVRDGRLDGEFVVDVIQGGAGTSTNMNANEVVANRALELLGLPFGSYDEIHPLDHVNRCQSTNDVYPTAVRLALVAAIDRLAVATEELAGAFARKATEFRAVPKIGRTQLQDAVPMTVGQELGAFATTLREELARLADSRRLLCEINLGATAIGTGITAHPDYRRLAVQHLAEITGLPVVGAGDLVEATSDTGAFVQVSSVLKRIVVKASKICNDLRLLGSGPQAGLAELQLPARQAGSSIMPGKVNPVIPEMVNQVAFWVIGNDVTVTMAAEAGQLQLNAFEPVMGHGLLQGFTWTAAAFDSLRTLCVDGITVDAPKLAAAAAANAGLATALTPLLGYVRSAEIAKAALSGAGAVRDLALATGGLDAAVLDALLRPEVLANLDAPGPAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUI3</accession>
    <name>A0A0Q8UUI3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">FAD-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18070</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893227.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48826">
        <property type="protein sequence ID" value="KRC48826"/>
        <property type="gene ID" value="ASE19_18070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="324612at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="415" mass="44871" checksum="87F636E0235454A6" modified="2016-01-20" version="1">MTTEQIEVLVVGAGQAGVAMSEHLSDNGVPHLVLERDRIAERWRTMRWDSLVANGPAWHDRFPGLEFQDVGADEFATKEQVAAYFEAYAEKINAPIRTGVEVTSVTRHEGRPGFLVETSAGTIDARYVVAATGPFQRPVVPPIVPDGAVPVQIHSSDYRNPAQLPEGNVLVVGAGSSGVQIADELQRSGRQVHLSVGPHDRPPRSYRGRDFCWWLGVLNLWDLETPPAGAEHVTIAVSGARGGHTVDFRALAAIGIQLVGLTDAYDDGVLSFREDLATNITAGDANYLALLQAADAYVERNGLDLPEEPQAHILGPDPVAATDPLLSVDLVEAGITSIVWATGFALDYGWLQVDAFDEAGRPAHRRGVSAEPGIYFLGLPWLSRRGSSFIWGVWHDAKHIAGHIATQRSYLTYGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUU4</accession>
    <name>A0A0Q8UUU4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cobalamin biosynthesis protein CbiX</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18875</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893367.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48965">
        <property type="protein sequence ID" value="KRC48965"/>
        <property type="gene ID" value="ASE19_18875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1573073at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002762">
        <property type="entry name" value="CbiX-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01903">
        <property type="entry name" value="CbiX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="247" mass="26108" checksum="EEF9B5170B42B2A6" modified="2016-01-20" version="1">MAAPALIALAHGSRDPRSAATITALVDATKALRPDLRIERAFLDLSKPGFHTVVDRLVKAGFDEIVVVPLLLVEAFHAKVDVPEMIAEATTRHPGLQIRATEVLGLEARFLEVLDERLREALSAARVRELDALVLAAAGTTDPLANQAVARLARLWGAHHRLPVTAAYATSAPPATGEAVRAFRAEGRRHIAVASLFLAPGSLVDRAAELAVEAGAVAVSEPLGAHPEIARTILARYAVGAVELVPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUW6</accession>
    <name>A0A0Q8UUW6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18385</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893285.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48884">
        <property type="protein sequence ID" value="KRC48884"/>
        <property type="gene ID" value="ASE19_18385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1582456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="300" mass="31282" checksum="E4F9CAFCE4E17B1C" modified="2016-01-20" version="1">MSRPSYDLTDKVVLITGGNGGIGAATARTLLGRGARVVIADIDPATPGRARDLHPANALGCVADVRDPSTLEAAVAHAVDHFGRLDVVIANAGLLAKAATLRNTPTADIEATLAVNVTGVANTVTAALPQVIAQQGQVVVISSVFAFLNGMGTIPYAMSKAAVEQLGRGLRVELADHGVSVLTAYFSLVQTDMIARGVDEDPVVMELLGALPKAMLKRITPDQAAAGIADGLENRAVRVIRPNLWGPVSSLRGLLNPTLDSRFSRDRRILDVLARLDARPVAVVPTPATTSAGSSRRKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUZ1</accession>
    <name>A0A0Q8UUZ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18575</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48916">
        <property type="protein sequence ID" value="KRC48916"/>
        <property type="gene ID" value="ASE19_18575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1972610at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="311" mass="32378" checksum="E9F7E4AD869536D0" modified="2016-01-20" version="1">MALGVVAVLALAGCGDDKAEPRQGSRPVGGSASASASTGADEGATPDGQTPEIEVLGTGAQPRRVLELDLVEGHVEDGTMRMTVTTSADVMSTPPVKVPMVMPVRTTVTDVTGDRATVESQYGEVSVPRSSGLDEASRQQLLESMQLLDGTTIRVVYDRSARTLSSEVEYGDKGGSEVLERMLDDFAAQSSNLSVLMPEQAVGVGARWQATSSITVGGITSDVVATYELTGLADDGYTVRLTSRQTPRRGPVATGGEIIGGGTDVTGTTEVRHGMVGPFHAIGTGHGTVTMEVGGQRVRTTFDMTMDVSTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV37</accession>
    <name>A0A0Q8UV37_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Precorrin 6A synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_17375</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893813.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49086">
        <property type="protein sequence ID" value="KRC49086"/>
        <property type="gene ID" value="ASE19_17375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1209876at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043819">
        <property type="term" value="F:precorrin-6A synthase (deacetylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11643">
        <property type="entry name" value="Precorrin-6A-synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012797">
        <property type="entry name" value="CobF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="5">
        <location>
            <begin position="2"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC49086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="239" mass="25249" checksum="D5512B7DEB4124FE" modified="2016-01-20" version="1">MGPQHVTPEAAAALAGCDYALAVQKGEDDPLLAVRQAVADAHGLELVVVRDPERDRSPGLDRAAYEGAVGNWYAARLAAYRSVLASREGTCAFLVWGDPSLYDGTIRIVRELGADFDVLPGISAPQVLAARHGIVLHDVGQPVHVTTARRLRADVAAGQRNVVVMLTAGVDLDGFSDWHVWWGANLGGVGERLVSGRVGSVVGEIAEARTATKAEAGWVMDLFLLRAPADVEGRPDGTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV39</accession>
    <name>A0A0Q8UV39_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">S-adenosylmethionine synthase</fullName>
            <shortName evidence="11">AdoMet synthase</shortName>
            <ecNumber evidence="11">2.5.1.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">MAT</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Methionine adenosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">metK</name>
        <name evidence="17" type="ORF">ASE19_19370</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <reference evidence="17 18" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + H2O + L-methionine = diphosphate + phosphate + S-adenosyl-L-methionine</text>
            <dbReference type="Rhea" id="RHEA:21080"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="2.5.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
        <text evidence="11">Binds 1 potassium ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="11">Binds 2 divalent ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Amino-acid biosynthesis; S-adenosyl-L-methionine biosynthesis; S-adenosyl-L-methionine from L-methionine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homotetramer; dimer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11 12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11 13">Belongs to the AdoMet synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.6" evidence="11"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893450.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49048">
        <property type="protein sequence ID" value="KRC49048"/>
        <property type="gene ID" value="ASE19_19370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1024388at2"/>
    <dbReference type="UniPathway" id="UPA00315">
        <property type="reaction ID" value="UER00080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004478">
        <property type="term" value="F:methionine adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006556">
        <property type="term" value="P:S-adenosylmethionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00086">
        <property type="entry name" value="S_AdoMet_synth1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022631">
        <property type="entry name" value="ADOMET_SYNTHASE_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022630">
        <property type="entry name" value="S-AdoMet_synt_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022629">
        <property type="entry name" value="S-AdoMet_synt_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022628">
        <property type="entry name" value="S-AdoMet_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002133">
        <property type="entry name" value="S-AdoMet_synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022636">
        <property type="entry name" value="S-AdoMet_synthetase_sfam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11964">
        <property type="entry name" value="PTHR11964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02773">
        <property type="entry name" value="S-AdoMet_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02772">
        <property type="entry name" value="S-AdoMet_synt_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00438">
        <property type="entry name" value="S-AdoMet_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000497">
        <property type="entry name" value="MAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55973">
        <property type="entry name" value="SSF55973"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01034">
        <property type="entry name" value="metK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00376">
        <property type="entry name" value="ADOMET_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00377">
        <property type="entry name" value="ADOMET_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 11 12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 11 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 11" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="10 11 12" id="KW-0630">Potassium</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11 17" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="S-AdoMet_synt_N" evidence="14">
        <location>
            <begin position="5"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="domain" description="S-AdoMet_synt_M" evidence="15">
        <location>
            <begin position="124"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="domain" description="S-AdoMet_synt_C" evidence="16">
        <location>
            <begin position="247"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="region of interest" description="Flexible loop" evidence="11">
        <location>
            <begin position="99"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="174"/>
            <end position="176"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="244"/>
            <end position="245"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="253"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="259"/>
            <end position="260"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="276"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="284"/>
        </location>
        <ligand>
            <name>L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU004462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF02772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF02773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KRC49048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="399" mass="42870" checksum="79433836B1E06AAA" modified="2016-01-20" version="1">MTGRLFTSESVTEGHPDKIADQISDTVLDYLLEHDPKSRVAVETLLTTGLVVVAGEVTTEAYAPVAQLVREKILEIGYDSSDKGFDGNSCGVQVAIGAQSPDIAQGVDTAEDVRLGGSSDELDKQGAGDQGLMFGYACDDTPELFPLPIKIAQTLAEKLTAVRKDGTLPYLRPDGKTQVTIEYDEDDRAVRVDTVVLSTQHAEDVTQEQIAADITAKVIEPVLQQFKTSVPFDGYKLHINPTGKFVVGGPMGDAGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLARRCEAQVAYAIGVAKPVGVFIETFGTGIVPDEKIQEAVLEVFDLRPAAILRDLDLRRPIYAKTAAYGHFGRELPEFTWERTDRAEALKAAVGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWG0</accession>
    <name>A0A0Q8UWG0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0434 protein ASE19_20720</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20720</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0434 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896040.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46269">
        <property type="protein sequence ID" value="KRC46269"/>
        <property type="gene ID" value="ASE19_20720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1834382at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01187">
        <property type="entry name" value="UPF0434"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005651">
        <property type="entry name" value="Trm112-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03966">
        <property type="entry name" value="Trm112p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="60" mass="6101" checksum="6D89F0B40E7D4D12" modified="2016-01-20" version="1">MNAEISPELLAIIVCPACHGELAVTPAGDATELVCGGCGLAYPVRDGIPVLLVDEARKPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWG7</accession>
    <name>A0A0Q8UWG7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">D-alanine--D-alanine ligase</fullName>
            <ecNumber evidence="7">6.3.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">D-Ala-D-Ala ligase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">D-alanylalanine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ddl</name>
        <name evidence="11" type="ORF">ASE19_20235</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Cell wall formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + 2 D-alanine = ADP + D-alanyl-D-alanine + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:11224"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57416"/>
            <dbReference type="ChEBI" id="CHEBI:57822"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="8">Binds 2 magnesium or manganese ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the D-alanine--D-alanine ligase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.4" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895966.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46193">
        <property type="protein sequence ID" value="KRC46193"/>
        <property type="gene ID" value="ASE19_20235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="764798at2"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008716">
        <property type="term" value="F:D-alanine-D-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00047">
        <property type="entry name" value="Dala_Dala_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000291">
        <property type="entry name" value="D-Ala_lig_Van_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005905">
        <property type="entry name" value="D_ala_D_ala"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011095">
        <property type="entry name" value="Dala_Dala_lig_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011127">
        <property type="entry name" value="Dala_Dala_lig_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07478">
        <property type="entry name" value="Dala_Dala_lig_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01820">
        <property type="entry name" value="Dala_Dala_lig_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039102">
        <property type="entry name" value="Ddl/VanB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01205">
        <property type="entry name" value="D_ala_D_alaTIGR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00843">
        <property type="entry name" value="DALA_DALA_LIGASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00844">
        <property type="entry name" value="DALA_DALA_LIGASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 7 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0464">Manganese</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="10">
        <location>
            <begin position="114"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR039102-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC46193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="312" mass="32493" checksum="590794CE734CA821" modified="2016-01-20" version="1">MRTRVAVIGGGQNCEHDVSLSSAASVAASLDPANYDVVPLTIGRDGTWRDRGLRPIGLAGAAQVLRGCDVVFPVVHGPRGEDGALAALCELAGLPYVGSGIRPGALAMDKWATKLVARAVGIATAPGVLVTRASAAHLRWTHPVVVKPVAAGSSQGVSRVDVPQQLQPALAAALAIDDRVLVEDLMTGREVDVAVLRRADGSLFVPPALEIVVEGLFDYDAKYGGHADFRIPAELVDTDAKALQDAATAVFEALGCAGVARVDFFLTEAGPVLNEVNTVPGMTEHSQAPQMFAAAGMSYPELLDELVRGAHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWM8</accession>
    <name>A0A0Q8UWM8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20545</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46241">
        <property type="protein sequence ID" value="KRC46241"/>
        <property type="gene ID" value="ASE19_20545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="191097at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002591">
        <property type="entry name" value="Phosphodiest/P_Trfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01663">
        <property type="entry name" value="Phosphodiest"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359498" evidence="1">
        <location>
            <begin position="34"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="357" mass="38645" checksum="B3A2304C47F8778E" modified="2016-01-20" version="1">MLGSVTTPRRIGPTTAVVVLVLTTALSLLSGCAQDPPGAPTRTAVQSAQVAAPHATRVVAISLDGLNPSAITKLGRTRLPNLYRMLDEGAFTLNARAQVEQTVTLPNHTSMVTSRRINRAAGGHGVTWNVHRPGTTVQRAAGHDVSSVFRVVHAAGGSTSMFSTKVKFSLFQRSWPVAVDRSVIREQDDTTLTTLFRQDLLANTRAFAFLHLGLADQTGHASGWMSTAYLHAVIKLDRLVGQVLATIRNTPRLRSSTFVILTSDHGGTPGTTSHDVATRYANYRIPFVVWGVGVDHANLYRLNSPTQFKDPGRTRPGFTGVQPIRNGDMANLATDVLGLGPVPGSLWNKRQRLTWHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWP9</accession>
    <name>A0A0Q8UWP9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20655</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896028.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46257">
        <property type="protein sequence ID" value="KRC46257"/>
        <property type="gene ID" value="ASE19_20655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047542at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="22"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="19729" checksum="6659B7BED90BFE82" modified="2016-01-20" version="1">MSTRDTVLAAAQRLLTTDPTASMAQIATAAGVGRATVHRHFASREDLLREIGGRSLDRWSESLALADVPGAIASGEPERIRACLDELLRQFVADSEDFGIALTDLTVLNDGDLKARADVYFAQEVALYAAAQAAGVLRADVPARWLGHTVYGLLVAVRDALVAGDVARRDAADLVLSTFLDGGVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY07</accession>
    <name>A0A0Q8UY07_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphoglycerate mutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16295</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893634.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50166">
        <property type="protein sequence ID" value="KRC50166"/>
        <property type="gene ID" value="ASE19_16295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1122642at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="22420" checksum="E8D3378CCA1186BD" modified="2016-01-20" version="1">MPVRHLYLARHAEPVGDGSRLTDRGVEQAALLGRRLCAVALDSVQHGPLPRAAETARVVVGQLAGPQVRVQQLDAAGDYVPSVPDRDEVAPEHADHVFGFLGEVSPSEAAHGATLADRAVRVLTGPEHGDADSHHLVVTHAFTIGWLVRHALDAPSWRWLGLNHGHAALTVLRFFTNRPPALVVFNDMSHLPDELRWTGFPDDLRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY85</accession>
    <name>A0A0Q8UY85_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pup deamidase/depupylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16585</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Pup ligase/Pup deamidase family. Pup deamidase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893687.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50218">
        <property type="protein sequence ID" value="KRC50218"/>
        <property type="gene ID" value="ASE19_16585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="537546at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019941">
        <property type="term" value="P:modification-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010498">
        <property type="term" value="P:proteasomal protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022366">
        <property type="entry name" value="Pup_deamidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004347">
        <property type="entry name" value="Pup_ligase/deamidase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42307">
        <property type="entry name" value="PTHR42307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03136">
        <property type="entry name" value="Pup_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018077">
        <property type="entry name" value="UCP018077"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03688">
        <property type="entry name" value="pupylate_PafA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR018077-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="502" mass="56466" checksum="82199177E50F2778" modified="2016-01-20" version="1">MSVRRVMGTEVEYGISVQGHPTANPMVASSQVVNAYATATVRARRARWDFEEESPLRDARGFDMARQIADPTQLTDEDLGLANVILTNGARLYVDHAHPEYSTPEVVSPLDIVRWDKAGEQVMLDAARLAQNLPGNPQIVLYKNNTDNKGASYGAHENYLMRRSTSFADIVRHLTPFFVSRQVITGAGRVGKGQDGRHEGFQISQRADFFEVEVGLETTLKRPIINTRDEPHADPEKYRRLHVIIGDANLSEIATYLKVGTTSLVLAMIEDRFISRDLSVDMPVASLRAVSHDPTLRHEVTLADGRHLTGIQLQLEYLDLAKKYVEDRYGADADPQTVDVLARWEDVLNRLETDPMSLADQLDWVAKLKLLEQYRSRDGLAWDDAKLQLIDYQYSDIRPEKGLYHRLVKAGRIQRLLTDDEVDTAMTNPPEATRAYFRGRCLEKYASDIAAASWDSVIFDLPGRESLQRVPTIDPLRGTKAHVGDLIDSCETAEQLVRALSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYH9</accession>
    <name>A0A0Q8UYH9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Alanine dehydrogenase</fullName>
            <ecNumber evidence="2">1.4.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_17115</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AlaDH/PNT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.1.1" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893781.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50312">
        <property type="protein sequence ID" value="KRC50312"/>
        <property type="gene ID" value="ASE19_17115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000286">
        <property type="term" value="F:alanine dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042853">
        <property type="term" value="P:L-alanine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008141">
        <property type="entry name" value="Ala_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007886">
        <property type="entry name" value="AlaDH/PNT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007698">
        <property type="entry name" value="AlaDH/PNT_NAD(H)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42795">
        <property type="entry name" value="PTHR42795"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01262">
        <property type="entry name" value="AlaDh_PNT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05222">
        <property type="entry name" value="AlaDh_PNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01002">
        <property type="entry name" value="AlaDh_PNT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01003">
        <property type="entry name" value="AlaDh_PNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AlaDh_PNT_N" evidence="5">
        <location>
            <begin position="7"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="AlaDh_PNT_C" evidence="4">
        <location>
            <begin position="147"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM01002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM01003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="380" mass="41143" checksum="610A94165DB8D5BE" modified="2016-01-20" version="1">MTLSSLGVIGSSAKENEHRLPIHPDHLAHVDADIRARITLEHGYGARFGVDDASLRPHVAGFASREQLLADSDVVLLPKPQLSDVAAMGSGQVLWGWPHCVQDAELTQVAIDQRLTLIAFEAMNHWTHDGGVGLHVFHRNNELAGYCSVLHALQLAGLTGDYGRRLSAVVIGFGATARGAVTALNAHGVHEVAVLTNRGVAAVGSPIHSVRIRQFEHDADPGKPSHVITERGREPLPAYLAENDIVVNCTLQDTAQPLIYLADDDLTAFRPGSLIVDVSCDLGMGFTFARPTGFDDPTFLVGDNVLYYGVDHSPSYLWNSATWDNSSALLPFVRRVLEGGPSWDADETLSRAIEIRDGRVVNPAILAFQGREPEPPYRVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYM5</accession>
    <name>A0A0Q8UYM5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Segregation and condensation protein B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_17195</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893901.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50373">
        <property type="protein sequence ID" value="KRC50373"/>
        <property type="gene ID" value="ASE19_17195"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051304">
        <property type="term" value="P:chromosome separation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005234">
        <property type="entry name" value="ScpB_csome_segregation"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34298">
        <property type="entry name" value="PTHR34298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04079">
        <property type="entry name" value="SMC_ScpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019345">
        <property type="entry name" value="ScpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00281">
        <property type="entry name" value="TIGR00281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="177"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="200" mass="21560" checksum="C6CBA4F83A775FEC" modified="2016-01-20" version="1">MPLAPLRPSLEAVLMVADQPLDQISLATAVGYPAQEVADALVALAAEYDEQERGFELRNVAGGWRYYTREEYAAVVEGFVLEGQQARLTQAALETLAVVAYQQPVSRARVSAVRGVNVDGVMRTLINRGLVEDAGQDGEHGATLYRTTSYFLERIGIVSLDDLPDLAPHLPDLAEMEEELASSQAPESAAAPTEESSDDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ37</accession>
    <name>A0A0Q8UZ37_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phenazine biosynthesis protein PhzF</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18605</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893322.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48921">
        <property type="protein sequence ID" value="KRC48921"/>
        <property type="gene ID" value="ASE19_18605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1468060at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003719">
        <property type="entry name" value="Phenazine_PhzF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13774">
        <property type="entry name" value="PTHR13774"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02567">
        <property type="entry name" value="PhzC-PhzF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016184">
        <property type="entry name" value="PhzC_PhzF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00654">
        <property type="entry name" value="PhzF_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR016184-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="275" mass="28964" checksum="DEDB82B55638703A" modified="2016-01-20" version="1">MQPHDFRQVDVFTSEPLLGNPVAVVHGADELDDRQMQAFARWTNLSETTFLLRPTDPAADYRLRIFTPSMELPFAGHPTLGSAHAWLEAGGVPAGERLVQECGVGLVELRQAEGRLAFAAPALLRSGPVAEDLVVEIVAALGIERADVLDAAWADNGPGWVGVRLASAEQVLALTPDFAGLSVGVIGPWPEGSECEVEVRAFAPHAAGVTEDPVTGSLNASLAQWLAGTVLPPSYVASQGTVLGRRGRIHVDTAADGTIWVGGDTLTTIHGTVTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0L2</accession>
    <name>A0A0Q8V0L2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22350</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896319.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46551">
        <property type="protein sequence ID" value="KRC46551"/>
        <property type="gene ID" value="ASE19_22350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1398170at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="46"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="287"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="300"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="502" mass="53256" checksum="DA98A205B683A5AD" modified="2016-01-20" version="1">MPEHHDPIDELTRFGAGFGSATPGGDMPLSASDVRRRGDQIRRRRTALVAGGAALAVAAVAVPVFAVIGNGNPRADRDNVAVETPVLAQGDLLRDADTQYEIGRLGAFRTTETFEGDGQAVYLPCQQASQSSLGATNSFTRTWTYLPDHQPGDTLEPDITNDDLTQMVADFETEEAARAAYDQFAEWIVDCDGHLPGADEVHVSPQGRTVEVKDADAVIYDLNWGPVPKNLDPTGDFAYISETGLLLEGTRISVLSVKIVGMDYNWLDEDGGSPVKRMLPTVAERLAPGALKDEPSAPTTTEPAEDTTTTDPGTTDPVISDDFPIFEGWPEDAGDGDGRVGPERTDEALGLEACGVTADDPLYTDRITARYDNAEDYRSRTLTTYASPDEAVAAVEAIRKVYAECPVGPVRDDGFTPNWAVKDTQVGGQSFAVLGWDELDGAATPYGDVTLVVRLGSSVLVVVHAGEGGAPGGGDDQRAVDQIVQESGAVVSAMCTFTAAGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0R6</accession>
    <name>A0A0Q8V0R6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19735</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46599">
        <property type="protein sequence ID" value="KRC46599"/>
        <property type="gene ID" value="ASE19_19735"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="222" mass="23790" checksum="5859EB7BEB58D8DD" modified="2016-01-20" version="1">MPADRAARRGQRPGRSVGRVTAPAPRRLVLLRHGRTAWNAAHRVQGQLDTELDEVGLEQARTVAPLVAALSPSLVWTSDLARARVTAEVVAKECGLVSSYDERLREFRLGSFQGLTHAELEAADPAAFVRFRGGDWTDIPGGETPAEVAGRYVACLRDLVAQLGPGECGVAVSHGAATRTGLVAFLGWPLTQARDLRALGNCGRVTLEQRSTGEWALASYNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1Y0</accession>
    <name>A0A0Q8V1Y0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cation-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896483.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51416">
        <property type="protein sequence ID" value="KRC51416"/>
        <property type="gene ID" value="ASE19_15125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1701106at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012312">
        <property type="entry name" value="Hemerythrin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01814">
        <property type="entry name" value="Hemerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hemerythrin" evidence="1">
        <location>
            <begin position="15"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="183" mass="20281" checksum="5342E803B968B34F" modified="2016-01-20" version="1">MTSGIDLGRPTAGDVIDLITDDHRRFERLLSQLRLATADRDAVRQAFAHVLIAHGEAEEELVYPVLRRTAEDVDAHDVEHGKEEHAEGNQALLALLELKGTETKAFTDAAEELSNLIAHHIAEEELSILEPARTETSTKVRYDLGAKWAQRRNELIDAGCGSLDNVRRIVAQAEKEGLLEDAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2A1</accession>
    <name>A0A0Q8V2A1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15170</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896490.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51423">
        <property type="protein sequence ID" value="KRC51423"/>
        <property type="gene ID" value="ASE19_15170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359636" evidence="1">
        <location>
            <begin position="26"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="93" mass="9531" checksum="A75576147960CF93" modified="2016-01-20" version="1">MKKTTLGLGSIVLAAALSLSACGGADEEKLAKEYCGLAQDAQDAVKSGDAAAAEKASKALLDWAEDNKDAKGSEDEFLDAVKKECPDVASTLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2K7</accession>
    <name>A0A0Q8V2K7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">L-serine dehydratase</fullName>
            <ecNumber evidence="9">4.3.1.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_16395</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>L-serine = NH4(+) + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:19169"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="EC" id="4.3.1.17"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the iron-sulfur dependent L-serine dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.1.17" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893653.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50185">
        <property type="protein sequence ID" value="KRC50185"/>
        <property type="gene ID" value="ASE19_16395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="225730at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003941">
        <property type="term" value="F:L-serine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029009">
        <property type="entry name" value="ASB_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004644">
        <property type="entry name" value="Fe-S_L-Ser_mono"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005130">
        <property type="entry name" value="Ser_deHydtase-like_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005131">
        <property type="entry name" value="Ser_deHydtase_bsu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03313">
        <property type="entry name" value="SDH_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03315">
        <property type="entry name" value="SDH_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143548">
        <property type="entry name" value="SSF143548"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00720">
        <property type="entry name" value="sda_mono"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="6 9" id="KW-0408">Iron</keyword>
    <keyword evidence="7 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8 9 12" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SDH_beta" evidence="11">
        <location>
            <begin position="4"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="SDH_alpha" evidence="10">
        <location>
            <begin position="187"/>
            <end position="450"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU366059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF03315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC50185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="456" mass="47791" checksum="B477879D02EDFF08" modified="2016-01-20" version="1">MALSVFDLYSVGIGPSSSHTVGPMRAARLFAEGLVTDGLLDSVARVRAQLFGSLGATGHGHGSEKAVVLGLEGEEPATVDIATYDERVAAVRDAGRLRLAGRHDVAFGADDLVLHRRKSLPGHPNGMRFEAWSPDGALLRERVYYSVGGGFVVDESAVGADRVVADETPVRYPFASAEELLRTCAETGLRISDVMLANELSWRTEAEVRAGLLEIWAVMQECVRAGCAAEGVLPGGLKVPRRAPALHARLTAATGGDDPLRAMDWVNLFALAVNEENAAGGRMVTAPTNGAAGIIPAVLHYYSRFVPGADDDGIVRFLLTAGAVGALFKQNASISGAEVGCQGEVGSACSMAAGAFCEVLGGTPDQVENAAEIGIEHNLGLTCDPVGGLVQIPCIERNAIASVKAINAARLALVGTGRHTVTLDRAIKTMRDTGRDMHTKYKETSRGGLAVNVIEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3Q0</accession>
    <name>A0A0Q8V3Q0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MDMPI_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15810</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893551.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50083">
        <property type="protein sequence ID" value="KRC50083"/>
        <property type="gene ID" value="ASE19_15810"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017517">
        <property type="entry name" value="CHP03083_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024344">
        <property type="entry name" value="MDMPI_metal-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11716">
        <property type="entry name" value="MDMPI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03083">
        <property type="entry name" value="TIGR03083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MDMPI_N" evidence="1">
        <location>
            <begin position="5"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="228" mass="23968" checksum="1ADCA8F472C06508" modified="2016-01-20" version="1">MTLPLHAATERLLSTVDHLPDSAWSGPSHCTGWTRSHVIAHLALNAEALAGVLRGFRDGAPVTMYVADDARDRDIDVLAAAAPAEVRARLQAACASFAEVAAVADDLAPGTTFERTPGGRVMPAGAVPFLRLREVEIHHADLDAGYIVSDWPSETAQSFLRNDAKQYRGPGFHAVASDGSGSWDFGEVDASSPTVSGPLGALAWWATGRDAGPVLSSTNATLPTMEGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5I0</accession>
    <name>A0A0Q8V5I0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_09085</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894524.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52587">
        <property type="protein sequence ID" value="KRC52587"/>
        <property type="gene ID" value="ASE19_09085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1479518at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045621">
        <property type="entry name" value="BPD_transp_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19300">
        <property type="entry name" value="BPD_transp_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="38"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="132"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="167"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="210"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="264"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="314"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="128"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="356" mass="36163" checksum="09996B8CDCB0D957" modified="2016-01-20" version="1">MSIAAPASPATGAATAVGGAGGAVAAAVRRTLPWLRSLAGIVAVTVTVLLLASVITFALGALSDSNPAAAALGETATQEDIDRLNHEFGLDRSLVAQYFSWVGHALTGDLGRSWFTTIPVTDSIRTALPVDLSIAALALVLAILIGGGAGIGAALSNGGVFDRVVTLVCSLLGTLPPFVIGMALIVVFAVKLQVLPAGGYVPIGQDPLEWLRFSILPGLALSLDVAASIARQLRTSLTGELRENYAIGAEMRGFGRRRVLFGHVLRNAAGPTLAVIGLAIPLIIGGAVMTEKLFGLPGVAQLALQSAERGDVPVVLGTLLVTAVVVVAASLVINVLQTLLNPVARRGDGTTVGAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V652</accession>
    <name>A0A0Q8V652_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15040</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896468.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51401">
        <property type="protein sequence ID" value="KRC51401"/>
        <property type="gene ID" value="ASE19_15040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1895150at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="169" mass="17303" checksum="132E7CC1478FDF5B" modified="2016-01-20" version="1">MGKSLATRIIGIGVAVVIAVVGGLIWNKGQEKVEEAKAPKVGECVNMTGSSFDADHEELSCDDAKATYKIMSDKGGCDEVELNYTISIGSTDSGNVADLCLDLNAAVGDCFDLGGISTPAKKVACTEATAGSTIAEVASVGKPGDKCANGAQPWENKKRKTLLCMGAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V675</accession>
    <name>A0A0Q8V675_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10250</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HAD-like hydrolase superfamily. SerB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894723.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52790">
        <property type="protein sequence ID" value="KRC52790"/>
        <property type="gene ID" value="ASE19_10250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1472357at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006385">
        <property type="entry name" value="HAD_hydro_SerB1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01490">
        <property type="entry name" value="HAD-SF-IB-hyp1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="265"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="294" mass="31318" checksum="BEA5C68F1D898091" modified="2016-01-20" version="1">MGASADRPRRLNLQQRSKLAGEAAAAAAEVETALAQPADPHAAAFFDVDNTVMQGASIFHLAKGLYRRDFFTTRDLIGAAWKQAYFRIAGVEDPEHVAEAQSAGLAFIAGHTVAELKEIGEEIFDEAMAHRIWPGTRALAQMHLDQGQRVWLVTAAPIEIASLIARRLGLTGALGTVAEHVDGVYTGRLVGDMLHGPAKAVAVQALAEREGLDLAACSAYSDSANDLPMLGLVGDPCAINPDPKLRAHARAHGWRIRDYRTGRKAARAGLVVGSAATGAAVAGALVRRQFRRHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V677</accession>
    <name>A0A0Q8V677_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_10960</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CdaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894849.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52917">
        <property type="protein sequence ID" value="KRC52917"/>
        <property type="gene ID" value="ASE19_10960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1439158at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041522">
        <property type="entry name" value="CdaR_GGDEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17853">
        <property type="entry name" value="GGDEF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF_2" evidence="3">
        <location>
            <begin position="160"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_30" evidence="2">
        <location>
            <begin position="345"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="409" mass="44622" checksum="CDED832E40E8FA9A" modified="2016-01-20" version="1">MDVEQLAEALAQLVLADADLDELVAAIGKALRAHVAVTTTDGRERAALIDDAMRERLKEASLTDETGRLRVEWIGEWYGRENQPVTGARVHRLALTAPNQALGHLVAVVERDLTDVELAALQRAATAIALWVTREQAVSAVENKYRGDFLRDVFLGRAGAEEFVREHVVGFGWDLGGPMVVLAAQIDPQPSYQPAASVEDRRHWQERFANAWRQVAAGIDKGIPIADFGSEVVAVLPAADPDATAELVRRLVHAVAGDKGGGRRPFTAGVGRVTGGPAGLPDSYAQARRAVDVGRRFRGGSTTTWFDELGLHRLIAMVPDVAELRAFAYDVLGELAESTEEAATLRETLQVLLNTNFNVAEAARTQFFHYNTMRYRVGKLERLLGPVASDQNLRLDVAVALKVLEVVTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6J8</accession>
    <name>A0A0Q8V6J8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_11470</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894936.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53006">
        <property type="protein sequence ID" value="KRC53006"/>
        <property type="gene ID" value="ASE19_11470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="8"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="124"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="231"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="381" mass="42033" checksum="EB023DEFD7D5D2AC" modified="2016-01-20" version="1">MKREIYDEDHEAFRASVKEFVDRSVLPHTEEHIKAKALPREFWLDAGKQGLLGLCIPEEYGGADAGDFRFNAVLQEELAKVGAAYPTCHGIHADITAPYIVELGTEEQKQRWLPGVASGEIVLGIGMTEPGGGSDLAALKTTAVRDGDSWVINGSKTFITNGYSGDLFVTAVRTDPEKGPKGITLFGIEATAEGFSRGRKLDKVGMEESDTAELFFENVRLTDAEIIGELNMGFIHMMQKLPQERLGCAVANIAHAKQILEETIQYAKERQAFGAPIGTFQHNKFLLADLVTRIEAAEAYIDKCVLNHSQKTLTAIDAAKAKWFSSQVQSEVLDHCVQLHGGYGFMNEYRVARAWRDARVTKIWAGSNEIMKELIGRDLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Q6</accession>
    <name>A0A0Q8V6Q6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Citrate synthase (unknown stereospecificity)</fullName>
            <ecNumber evidence="2">2.3.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12035</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Carbohydrate metabolism; tricarboxylic acid cycle.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.16" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895037.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53109">
        <property type="protein sequence ID" value="KRC53109"/>
        <property type="gene ID" value="ASE19_12035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1412360at2"/>
    <dbReference type="UniPathway" id="UPA00223"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036440">
        <property type="term" value="F:citrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.580.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016142">
        <property type="entry name" value="Citrate_synth-like_lrg_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016143">
        <property type="entry name" value="Citrate_synth-like_sm_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002020">
        <property type="entry name" value="Citrate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036969">
        <property type="entry name" value="Citrate_synthase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11739">
        <property type="entry name" value="PTHR11739"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00285">
        <property type="entry name" value="Citrate_synt"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48256">
        <property type="entry name" value="SSF48256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="28212" checksum="5B8AF8B83327822B" modified="2016-01-20" version="1">MAARDTNSWETAISKIEPHDLIVRGERMSELMGKASFAEVAYLILAGKRATPGQAKVLEALLISVMDHSIAPSSTVARLLASYGVPIQAAIAGGALTFGDIQGGAGQELARNLHSVVERVKAEGEVTDEALRLAAKEMVADARARRAPLDGFGHPQHDPDFRTPILLKLAKEQGVFAYHCALLTHLEDELAAAIGRRVGANIDGASAAILLDLDLKPDVARVLIVTPRTVGLAAHYLEEIEQGNTWRHVPVDQVAYTGPLPEDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Y9</accession>
    <name>A0A0Q8V6Y9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glucose-6-phosphate isomerase</fullName>
            <shortName evidence="7">GPI</shortName>
            <ecNumber evidence="7">5.3.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Phosphoglucose isomerase</fullName>
            <shortName evidence="7">PGI</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Phosphohexose isomerase</fullName>
            <shortName evidence="7">PHI</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pgi</name>
        <name evidence="9" type="ORF">ASE19_15890</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the reversible isomerization of glucose-6-phosphate to fructose-6-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7 8">
            <text>alpha-D-glucose 6-phosphate = beta-D-fructose 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:11816"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:58225"/>
            <dbReference type="EC" id="5.3.1.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 7 8">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 2/4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7 8">Belongs to the GPI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.9" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893564.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50097">
        <property type="protein sequence ID" value="KRC50097"/>
        <property type="gene ID" value="ASE19_15890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="417261at2"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00181"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004347">
        <property type="term" value="F:glucose-6-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05015">
        <property type="entry name" value="SIS_PGI_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05016">
        <property type="entry name" value="SIS_PGI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00473">
        <property type="entry name" value="G6P_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001672">
        <property type="entry name" value="G6P_Isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023096">
        <property type="entry name" value="G6P_Isomerase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018189">
        <property type="entry name" value="Phosphoglucose_isomerase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035476">
        <property type="entry name" value="SIS_PGI_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035482">
        <property type="entry name" value="SIS_PGI_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11469">
        <property type="entry name" value="PTHR11469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00342">
        <property type="entry name" value="PGI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00662">
        <property type="entry name" value="G6PISOMERASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00765">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00174">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51463">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 7 8" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="4 7 8" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="5 7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="367"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="398"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="522"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC50097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="559" mass="60603" checksum="99ED638916ECC245" modified="2016-01-20" version="1">MGAAPVDPRSTAAWSTLAKLSDGFAPDLRRWFADDPTRVERFSHTAGDLHVDLSKNLLDDDILGALLELAREVGLEDRRDAMFRGDHINVTEDRAVLHTALRRPAGVDIEVDGHDVVDDVRDVLRRVYAFADDVRSGAWTGVTGERIRTVVNIGIGGSDLGPVMAYEALAPYVQDGLSCRFISNIDPTDAARTLADLDPASTLFVVSSKTFGTLETLTNARLCRSWLLDALRASGAVGASDEAGAEAVAQHFVAVSTALDKVAAFGIDPANAFGFWDWVGGRYSIDSAIGTSLVVAIGPERFEEFLGGFHAIDEHFQHTPLASNVPALMGLLNVWYVNFLDARTHAVLPYAQLLHRFPAYLQQLTMESNGKSVRWDGTPVTTDTGEVFWGEPGTNGQHAFYQLIHQGTQLIPADFLAFATPAYPLEDGTTDVHELLLANFFAQTKALAFGKTADEVRAEGTAESIVPARVFAGNRPTTSIMAPALTPAVLGQLIALYEHITFTQGVVWGIDSFDQWGVELGKQLALQIAPAIDGDEEVLAGQDASTRSLIGYYREHRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V757</accession>
    <name>A0A0Q8V757_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Daunorubicin resistance protein DrrC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16355</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893645.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50177">
        <property type="protein sequence ID" value="KRC50177"/>
        <property type="gene ID" value="ASE19_16355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="152379at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="2">
        <location>
            <begin position="470"/>
            <end position="771"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="510"/>
            <end position="517"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="782" mass="83272" checksum="DF3D68AB46B8ADCF" modified="2016-01-20" version="1">MTTPHPSDSHDLIRVRGARENNLKDVDVEIPKRRLTVFTGVSGSGKSSLVFGTIAAESRRLIDETYSTFVQGFMPNLPRPDVDVLEGLTTAILVDQERMGANPRSTLGTVTDAHAMLRSLFSRIGEPSIGGPTAFSFNIPTTTVGGASVTESGKKNVIKQQVYLGGMCPQCEGRGTVSDLDLSEIVDESRSLVDGAILVPGYTADGWMVAAYKAVLPPEKPVAKFTKAERDDFLYAEPRKIKVDKINITYEGLIPKIRKSMFAKDVDSLQPHIRAFVERAAVFGTCPSCDGTRLNESARSVTIKGRNIGEVAALQVTDLAEWLRTIDEPGVAPLIGTLLHLLDSFVDIGLGYLSLDRPSGTLSGGEAQRTKMVRHLGSALTDVTYVFDEPTIGLHPHDIERMNKLLLELRDKGNTVLVVEHKPETIAIADHVVDMGPAAGSGGGEVVFEGTVDGLRTSGTRTGEHLSYRASLKDTVRARSGVLEVRGADEHNLQKVDVDIPLGVLTVVTGVAGSGKSSLVHGSVVGREGVVAIDQAAIKGSRRSNPATYTGLLEPIRKAFAKANDVKPALFSANSEGACPTCKGSGVIVTELGFMDTVSTPCEDCGGKRFQAAVLDYRLGGLNIAEVLELPVDRALELFSAPDTKVPAAADILGRLRDVGLGYLTLGQPLNTLSGGERQRVKLALHLKEKGGVYVLDEPTTGLHLADVANLLGLLDRLVDAGKTVIVIEHHQAVMAHADWIIDLGPGAGHDGGRVVFEGTPAELVAQADTLTGQHLAEYVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7M4</accession>
    <name>A0A0Q8V7M4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13105</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895752.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53290">
        <property type="protein sequence ID" value="KRC53290"/>
        <property type="gene ID" value="ASE19_13105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1582456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="27279" checksum="5B25CDF9B27352F8" modified="2016-01-20" version="1">MTDQPLRVLITGASSGLGAALARAWEARGAQVLRTDRAADESAGELHLDITSDADWAAARQHVDRTWGGLDVLVNNAGIAGGGRLDVSGIDEWQRLVDINLLGAVRGTATFTPLFKQQGSGRVVNVASLAGLVHPAGMAGYNATKAAVVALTETTGHELAAHGVTAHVVCPSYFRTNLMAGVEGRDAALQHVMARLVEDSPISADDIATAVLDAIDAGTELIIPDDAARGAWQLKQSDRASYDAVMRAQARKLDQVAEAGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7S8</accession>
    <name>A0A0Q8V7S8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SGL domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12715</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895683.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53220">
        <property type="protein sequence ID" value="KRC53220"/>
        <property type="gene ID" value="ASE19_12715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="966287at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013658">
        <property type="entry name" value="SGL"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08450">
        <property type="entry name" value="SGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359787" description="SGL domain-containing protein" evidence="1">
        <location>
            <begin position="25"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="domain" description="SGL" evidence="2">
        <location>
            <begin position="221"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="343" mass="36501" checksum="A1C246F80B4EA9D4" modified="2016-01-20" version="1">MIRRTTLLVLASLVAVLGLVPADAAVRPVGATRVFAKVQAPGFPAYVHVAPNGRVYAGTYTNPTGDRMRSRVFEYTAGGTLLRSWTVPGQDLARPHGVQVAASDARGRLVLLEKSRARVLTLDVRTGRFVVQATIPDLPGGGHPIPNYAAWGPGGALFLTDYGQDVVWRIPAAGGTPRVWLRSPKLAGISFGTTGIVYEPSRRSFLITQQTTTNPLDLGRGHLYRAPLRADGRPGTLRTVWTSSALDLPDGFGVARSGNIYVALLGTNKVVKLSPAGKVLARYDAAGSAVAFDSPSNATFLGTRLLIANQSAILGDASHQVVLDMEVGERGAPILVPRRSRLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7V1</accession>
    <name>A0A0Q8V7V1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DpnI_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13545</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895832.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53370">
        <property type="protein sequence ID" value="KRC53370"/>
        <property type="gene ID" value="ASE19_13545"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041368">
        <property type="entry name" value="DRP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17726">
        <property type="entry name" value="DpnI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DpnI_C" evidence="1">
        <location>
            <begin position="20"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="185" mass="20504" checksum="9257E52D308824EE" modified="2016-01-20" version="1">MVGTTWKQAVADELARLYRPGQEFTLIEFYAGAEERLQAMYPDNTTVQATIRQILQRHRDARLLTFHGNGRYTYNGEHRRREQAEIPRNGLAEAVYQLAARITAETKIAATDYLAVARAPEPDQALRALVLGGHAGATFLALNATRRLDLSIERLAIELAGPHGLGADVVSAAADRLTYFESEPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V854</accession>
    <name>A0A0Q8V854_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13715</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897104.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53398">
        <property type="protein sequence ID" value="KRC53398"/>
        <property type="gene ID" value="ASE19_13715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2067303at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="68" mass="7402" checksum="9BF591F09F61F099" modified="2016-01-20" version="1">MRGTGIGGVVVALWLLFGVLAAYQRDYFSDERDVSCKTFGDTALTIVAGPLNYFGVNPKITCDTRPSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8S0</accession>
    <name>A0A0Q8V8S0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0234 protein ASE19_09910</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09910</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0234 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895160.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53608">
        <property type="protein sequence ID" value="KRC53608"/>
        <property type="gene ID" value="ASE19_09910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1612988at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd11740">
        <property type="entry name" value="YajQ_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.860">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.990">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00632">
        <property type="entry name" value="UPF0234"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007551">
        <property type="entry name" value="DUF520"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035571">
        <property type="entry name" value="UPF0234-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035570">
        <property type="entry name" value="UPF0234_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036183">
        <property type="entry name" value="YajQ-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30476">
        <property type="entry name" value="PTHR30476"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04461">
        <property type="entry name" value="DUF520"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89963">
        <property type="entry name" value="SSF89963"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="18008" checksum="213ECB8FB471D989" modified="2016-01-20" version="1">MADSSFDIVSKIDRQEVDNALGQTAREISTRFDFKGTGATIEWKGEQAIEISASADDRASAVLSVFQDKLIKRNQSLKILDASEPRQSGQVSKIGITLKEGITSEDAKKISKLIRDEGPKGVKAQIQGDELRISSKKRDDLQAVQALVKGQDYDFAVQFTNYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8Y9</accession>
    <name>A0A0Q8V8Y9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12500</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53654">
        <property type="protein sequence ID" value="KRC53654"/>
        <property type="gene ID" value="ASE19_12500"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002762">
        <property type="entry name" value="CbiX-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01903">
        <property type="entry name" value="CbiX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="223" mass="22324" checksum="2624DA02ABFFA1AC" modified="2016-01-20" version="1">MITVAHGTRTAAGNLVAAAVTEAAGLRLGVPATTSYVELCAPLFADVAAGVCAPTVVVPLLLSTGYHLRHDLPAAVLGSPDPGLVRLGSSLGPDPLLARAQVDRLRAAGAVPGQPVVLVAAGSSDPLATADLEGAAALLADAWEAPVRLATLSGLGPRLHDVVRAGDAVSPYLMATGYFHRKARHDALAAGASVVADVIGPHPLLVDLVCARAGSLASELVQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9K1</accession>
    <name>A0A0Q8V9K1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_07570</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895361.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53930">
        <property type="protein sequence ID" value="KRC53930"/>
        <property type="gene ID" value="ASE19_07570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="785253at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="6">
        <location>
            <begin position="89"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="5">
        <location>
            <begin position="199"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="22"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="422" mass="45862" checksum="6A230EB3D3AD71C4" modified="2016-01-20" version="1">MTRKKQVARVAEGITDRWYKASGDRSARYGHTGPAGSPDPNRYLARWKPPHAKEQSKTFATVGDAQRWLRHQKTAHDNGEWIRPDRANVKLADVHAEWWPQWQVRGASGRPLKPSTIAGYADLWRLLVEPTFGGRPVSAIRTGAISKWASQLSADGVSASRIRQAHRVLSLVLDHAVHDDRLRINPAKGARLPAERARSTRAAITAAQVLELADAVAVAQGAENPAYRTMVRLLGFTGLRLGEVSALRVRDLDLDRLEAGARAPAVTVRATLSDINGRLIEGTPKSGRTRVVPLPPDLVPELRDVAKGRKPGDRVFTSPRGDDLRPSNFRRRYWKPAAASIGKPDLVIHELRHTAVSLAVEAGVSLAQIANMVGHADPAITAKVYSHHFEDQLGSVGAALNGPLSAALSESRRNDGPGLAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9W9</accession>
    <name>A0A0Q8V9W9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptide-methionine (R)-S-oxide reductase</fullName>
            <ecNumber evidence="2">1.8.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_15350</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[thioredoxin]-disulfide + H2O + L-methionyl-[protein] = [thioredoxin]-dithiol + L-methionyl-(R)-S-oxide-[protein]</text>
            <dbReference type="Rhea" id="RHEA:24164"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="Rhea" id="RHEA-COMP:12313"/>
            <dbReference type="Rhea" id="RHEA-COMP:12314"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16044"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:45764"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.8.4.12"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.8.4.12" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896521.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51456">
        <property type="protein sequence ID" value="KRC51456"/>
        <property type="gene ID" value="ASE19_15350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1650261at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033743">
        <property type="term" value="F:peptide-methionine (R)-S-oxide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030091">
        <property type="term" value="P:protein repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028427">
        <property type="entry name" value="Met_Sox_Rdtase_MsrB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002579">
        <property type="entry name" value="Met_Sox_Rdtase_MsrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011057">
        <property type="entry name" value="Mss4-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10173">
        <property type="entry name" value="PTHR10173"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01641">
        <property type="entry name" value="SelR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51316">
        <property type="entry name" value="SSF51316"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00357">
        <property type="entry name" value="TIGR00357"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51790">
        <property type="entry name" value="MSRB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MsrB" evidence="4">
        <location>
            <begin position="9"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC51456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="133" mass="14969" checksum="BC9CCE58B150234A" modified="2016-01-20" version="1">MGYEVEKTDEEWRATLSPEEYQVLRKAGTERAFTGEYTDTETTGVYRCKACQAKLFESDTKFHSGCGWPSFYQPISDTVEYIEDTSHGMKRVEVRCANCGSHLGHVFPDGYGTPTGDRYCINSVSLTLEPKEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VB52</accession>
    <name>A0A0Q8VB52_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11970</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53097">
        <property type="protein sequence ID" value="KRC53097"/>
        <property type="gene ID" value="ASE19_11970"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="103" mass="10892" checksum="07AA166A32455EDC" modified="2016-01-20" version="1">MIDIGTMVAGPVAATLLADLAADVIKVEQPVSGDTLRHVGPHGEEGDSLWWNVEARNKKSITLDLRHSDGQRILKELVKDADVVVVLGLSTGQIAAGRESGVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBM8</accession>
    <name>A0A0Q8VBM8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Succinylglutamate desuccinylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_12925</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895719.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53257">
        <property type="protein sequence ID" value="KRC53257"/>
        <property type="gene ID" value="ASE19_12925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="632656at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007036">
        <property type="entry name" value="Aste_AspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043795">
        <property type="entry name" value="N-alpha-Ac-DABA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04952">
        <property type="entry name" value="AstE_AspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039012">
        <property type="entry name" value="ASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="317" mass="34174" checksum="7A80D9F2B36C00EE" modified="2016-01-20" version="1">MARESFAIGNVRVRAGATKEVELPITRLVTGGDVSLPVRVVHGREPGPTVWVNAAIHGDEVMGVEVIRQAMATLTARSFRGTLVAVPVVNVLGFMTGDRYLPDRRDLNRSFPGSARGSLASRIAHLFMTEVVSKCDVGLDLHTAADRRANLPQIRADLDDPRTRELAEAFGAPVMLHARLRDGSLRQAARDRGATVLLYEAGEALRFDEDAIAVGVRGVRRVLASLGMIDPEPEADALDVVESRSSNWVRARGTGILHLDVHLGEWVEAGQRLGGLSDTFGRRVRLVHADRPGIVIGLTRAPIVNAGDALVHVATPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBN7</accession>
    <name>A0A0Q8VBN7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11845</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895005.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53075">
        <property type="protein sequence ID" value="KRC53075"/>
        <property type="gene ID" value="ASE19_11845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041583">
        <property type="entry name" value="TetR_C_31"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17940">
        <property type="entry name" value="TetR_C_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="11"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="183" mass="19784" checksum="2B69DD8C81369CC6" modified="2016-01-20" version="1">MAHMPKGVADPERRDRIAAAAVDIVARHGVDKLTHRAVAASAGVPLGSTTYHFSSRDDLLLAAVEHAKRRWDVSVAEWEASLAPTTDLASALGDFAVRTTGEARAQAVVEYELYIAALRRPALRQLSLMWDETLPRAVARHTDSVTAQALSMALDGLVVRSLVSGEPLTLPSVKPIFDRILRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCF0</accession>
    <name>A0A0Q8VCF0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">TetR_C_33 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_05625</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54933">
        <property type="protein sequence ID" value="KRC54933"/>
        <property type="gene ID" value="ASE19_05625"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025996">
        <property type="entry name" value="TetR_C_WHG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13305">
        <property type="entry name" value="TetR_C_33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="TetR_C_33" evidence="4">
        <location>
            <begin position="44"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="169" mass="18326" checksum="3BD1D88283F43BDD" modified="2016-01-20" version="1">MSVYTHFGSMEALVRAVVEEGFARLEAHLAAVEPTADPVHDLARQTAAYVAHARENPELYAVMFATAPLAGYRPATPEELHLGRHETLDRVGASIERAVEAGRFESQHGSAPVFRWWTIVHGYVLLEGVGYLARERGPGRVLGPLLVDFLVGQGDARARAGRSVSGVLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCI8</accession>
    <name>A0A0Q8VCI8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GAF domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14440</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896974.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53529">
        <property type="protein sequence ID" value="KRC53529"/>
        <property type="gene ID" value="ASE19_14440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1649370at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01590">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GAF" evidence="1">
        <location>
            <begin position="5"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="200" mass="20101" checksum="4A150CE46F068211" modified="2016-01-20" version="1">MSSAGPAELVRACSDIRGLYGAAACSIARVTPEGDALRFVASDGAGATEIVGVRMGLGRGIAGFVALSGQPLAVGDVTRDARFARDVAESTDYVPAALLAVPLVDEAGDVTGVLSVLDPVRDDGASHLAGRSGTAAELAVLSVLGARLSVVLTATEREVGLATLAGDDELLAAIATLAAHRDRDAVRATIVGLARIVEEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCX2</accession>
    <name>A0A0Q8VCX2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Histidine kinase</fullName>
            <ecNumber evidence="3">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_14315</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896996.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53507">
        <property type="protein sequence ID" value="KRC53507"/>
        <property type="gene ID" value="ASE19_14315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1293707at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038318">
        <property type="entry name" value="KdpD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025201">
        <property type="entry name" value="KdpD_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003852">
        <property type="entry name" value="Sig_transdc_His_kinase_KdpD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13493">
        <property type="entry name" value="DUF4118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02702">
        <property type="entry name" value="KdpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="379"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="409"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="458"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="618"/>
            <end position="831"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="846" mass="89884" checksum="7417E2DE2623581D" modified="2016-01-20" version="1">MKRGRLRVYLGAAPGVGKTYAMLGEARRRAERGTDVVVGYVETHGRAHTAEMLAGLEVVPRRTTSYRGTELEEMDLDAVLRRRPKVVLVDELAHTNAPGSRNAKRWQDVQELLDAGIDVISTVNVQHLESVNDVVEKITGVPQRETVPDSVVRAADQVELIDMAAEALRRRLAHGNVYAPDKIDAALSNYFREGNLTALRELALLWVADKVDDALQGYRRRHDITGTWEARERVVVSLSGGPEGEQLIRRAARIAARSGAGDLLALHVSRSDGLTGADPTHLTHQHQLVESLGGTYHQLLGDDVPETLLAFARAENATQLVLGDSRRSRWAAYVSPPGIGARTIRAAGDIDVHIVSHSHAGQGRRLPVGRGSLSLRRRVRGYVLAVVLPLLVTLALLPVDHVLNLVSDVLLFLLLVVAVALVGGVGPAIIAALLGSFLLNYFFTAPVHTLTIASTNNALALAVYLLVAVMVSSVVDLAARRTRQAARAVAESHVLASLAATPLTGSRDLAGLLERFRESLSLTSVAFLEKDDRTWRLIGSAGPDPALTPEAADTVVPADPDTTLALRGHGLAPEDARVAAAFAARTSQAVHQIRLAEEAAQAAPLAEANKVRTALLAAVGHDLRTPLAAAKAVVSGLRAEDVALAEEDRRELLRTADEALDNLAGLVDSLLDLSRLQAGVLPVHLAPVLVEDVVAGALDDVSVATAGVRIEVVEGLPPTLADAALLERVVVNLLTNAQRYSPFGAMPLVTASAVLDRVEIRVVDSGPGIPSTDYERVFLPFQRLGDHDNSTGVGLGLALARGLVEAMGGTLEPEETPGGGLTMVISLPVADGEPAGPDLGIRERVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD09</accession>
    <name>A0A0Q8VD09_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Peptidase_S8 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_14435</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53689">
        <property type="protein sequence ID" value="KRC53689"/>
        <property type="gene ID" value="ASE19_14435"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023827">
        <property type="entry name" value="Peptidase_S8_Asp-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015500">
        <property type="entry name" value="Peptidase_S8_subtilisin-rel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00723">
        <property type="entry name" value="SUBTILISIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="SSF52743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00136">
        <property type="entry name" value="SUBTILASE_ASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0720">Serine protease</keyword>
    <feature type="domain" description="Peptidase_S8" evidence="5">
        <location>
            <begin position="24"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="268" mass="27622" checksum="8F2EF1C986EDE482" modified="2016-01-20" version="1">MLDAVAALPLPAGARDWAWGGATGRGVKVAVVDSGIDADHPWLQRGPVTGVQGHATLALDPTADDGFTLTTDPHEDLVGHGTACAAIIRALAPECELHSVRVLGANLKGQGALLHAGIAWAVEQGMDVVNLSLSSKADRMFAPLHEIADEAYFASTVLVCAANNYPGATYPSQFSSVVSVAARATDDPWSLAYNPRPPVEFAARGVELEVAWSDGGTTVATGNSFAAPHVAGLVALLRSKHPGLTPFQVKTVLQACAENAVPPAEGGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD76</accession>
    <name>A0A0Q8VD76_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ROK family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06395</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ROK (NagC/XylR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55166">
        <property type="protein sequence ID" value="KRC55166"/>
        <property type="gene ID" value="ASE19_06395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000600">
        <property type="entry name" value="ROK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18964">
        <property type="entry name" value="PTHR18964"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00480">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01125">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="360" mass="36594" checksum="1AACDBA041411AA3" modified="2016-01-20" version="1">MKLRRADSRRHHRAMLLQELFAEGPASRADLARSSGLTRVTVSDLVAELMAEGLLEELGAPAESRVGKPPTLVGLVPDAKHVVAIDLSVDDHVVGAVLTLAGSVVEREARPLEGRRGAEATALVEEIAADLVRRSTRPLLGVAVATPGVVSADGVVLDAPNLGWHDVPLAEVLGATLDLPVYVANDANTAVMGEYTFGGGGEGGLLLLRLSTGVGAGLVLGGAVLHGSGGAAGEIGHVQVDPDGETCACGRPGCLETYVAVPRLRRRIADGDLAAVLRDAGERLGQALAPVVATLNLGEVVLSGPADLVGPLAEHAEATVRDRVMPVSSAGFAVRVSTLGDDGVLVGATGVVLSGELGVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD98</accession>
    <name>A0A0Q8VD98_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribonuclease VapC</fullName>
            <shortName evidence="6">RNase VapC</shortName>
            <ecNumber evidence="6">3.1.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Toxin VapC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">vapC</name>
        <name evidence="8" type="ORF">ASE19_06200</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Toxic component of a toxin-antitoxin (TA) system. An RNase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the PINc/VapC protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894440.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55030">
        <property type="protein sequence ID" value="KRC55030"/>
        <property type="gene ID" value="ASE19_06200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1968541at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090729">
        <property type="term" value="F:toxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00265">
        <property type="entry name" value="VapC_Nob1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022907">
        <property type="entry name" value="VapC_family"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0800">Toxin</keyword>
    <keyword evidence="1 6" id="KW-1277">Toxin-antitoxin system</keyword>
    <feature type="domain" description="PINc" evidence="7">
        <location>
            <begin position="6"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC55030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="132" mass="14200" checksum="8FF07878672263BA" modified="2016-01-20" version="1">MTAAALLDTSVFVAVETGRSLVLDALPDRGHLSAITYAELQAGVLAATDLRTRSDRLATVEFAASYELLPVDAAAARHWARLRIELRDAGRAMKVNDLWIASVALAHDLPVVTQDHDFDVLADLGLLEVIPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDA2</accession>
    <name>A0A0Q8VDA2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15025</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896466.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51399">
        <property type="protein sequence ID" value="KRC51399"/>
        <property type="gene ID" value="ASE19_15025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1422015at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029064">
        <property type="entry name" value="L30e-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004441">
        <property type="entry name" value="rRNA_MeTrfase_TrmH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001537">
        <property type="entry name" value="SpoU_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013123">
        <property type="entry name" value="SpoU_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46429">
        <property type="entry name" value="PTHR46429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00588">
        <property type="entry name" value="SpoU_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08032">
        <property type="entry name" value="SpoU_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00967">
        <property type="entry name" value="SpoU_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55315">
        <property type="entry name" value="SSF55315"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00186">
        <property type="entry name" value="rRNA_methyl_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SpoU_sub_bind" evidence="2">
        <location>
            <begin position="74"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="33659" checksum="782BD0995AD293C3" modified="2016-01-20" version="1">MAGNSSRKGAIRKSSKRPQVGSGGQVRRGLAGKGPTPKATEREYHKAHKIAEAKKRAEAKGGQRGRRRTGGDEWIAGRNSVLEALRERVPVTSVYVAEGAERDNRLREVFRIAAENGVGLLEVTRTELDRLTDGAVHQGLAAKIPAYEYAHPDDLLEQAAEAGEAPLVVVLDSITDPRNLGAIVRSAAGFGAHGVVIPERRAASMTAAAWKTSAGAAARCPVAQTVNLTRQIKAYQDAGCFVVGLAADGDLSLPELVADADLARGPLVVVVGSEGDGLSRLVAENCDRLLSIPMAGVLESLNAGVAASVALYAISEARAQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDB7</accession>
    <name>A0A0Q8VDB7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">OmpA-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_09305</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the MotB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894563.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52625">
        <property type="protein sequence ID" value="KRC52625"/>
        <property type="gene ID" value="ASE19_09305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1619550at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025713">
        <property type="entry name" value="MotB_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13677">
        <property type="entry name" value="MotB_plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="domain" description="OmpA-like" evidence="7">
        <location>
            <begin position="164"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="300"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="338" mass="37597" checksum="13BEF152B7BBF398" modified="2016-01-20" version="1">MSAAKSKGHPPRRRHHDDEHDEHHVDERWLVTYADMVTLLMVLFIVMFAMSTVDEKKYAQLKDGLAEGFGREQSILSGASPVSNAKGANDPGEASYQMLLAQVPENQRETVTRILKESDRLRNERAYGDAKAEVDRLLKVWQQIDRALRREGLREDVRATIDDRGLVVSLVSEHVVFNANVAELTDRGRRVVDTLAPVLKLLSEPIEVDGHTNQEKVKPKFYPTDWELSLARAAHVLRRLEEVHGIRAGRLRATGFGHTKPLVDPARAGSQKVNKRVDIVVLSQAPAETRALMGDAYDEVRREAGLDDPDVGAASTHTPTSGADAAARPAPLRREDLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE31</accession>
    <name>A0A0Q8VE31_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Carbamate kinase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_10910</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the carbamate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894841.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52909">
        <property type="protein sequence ID" value="KRC52909"/>
        <property type="gene ID" value="ASE19_10910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="901370at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008804">
        <property type="term" value="F:carbamate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006525">
        <property type="term" value="P:arginine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04235">
        <property type="entry name" value="AAK_CK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003964">
        <property type="entry name" value="Carb_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30409">
        <property type="entry name" value="PTHR30409"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000723">
        <property type="entry name" value="Carbamate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AA_kinase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR000723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="32437" checksum="FD8EB400BEE3A22F" modified="2016-01-20" version="1">MRILLALGGNAMTSPDGKARPEDQIAAATEAMVAVADLVAEGVDVVITHGNGPQVGNLLVKNELAAQVVPPVPLDWCGAQTQGTLGDILMNALDGALAARGISRPTAALVTRTLVDGADPAFARPSKPVGRYLSADEAQTMIEHGETWEDRGERGWRRVVASPEPLEVLDAPAVVALVDAGFVVIANGGGGIPTVRHLDGTLAGVEAVIDKDLGAALLARAVEVDLLVIATDVAHAVLGFGTPDAHDIGEVDLDQMRAYADAGHFAGGSMGPKVDAVCRFVEQSGRRGVITDLHSIVAAASGRVGTIVTPNRKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF83</accession>
    <name>A0A0Q8VF83_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Peptidase_S8 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_12680</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895676.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53213">
        <property type="protein sequence ID" value="KRC53213"/>
        <property type="gene ID" value="ASE19_12680"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015500">
        <property type="entry name" value="Peptidase_S8_subtilisin-rel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00723">
        <property type="entry name" value="SUBTILISIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="SSF52743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0720">Serine protease</keyword>
    <feature type="domain" description="Peptidase_S8" evidence="5">
        <location>
            <begin position="180"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="149"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="4">
        <location>
            <begin position="149"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="449" mass="48498" checksum="F620CFA2D502AF2C" modified="2016-01-20" version="1">MRPTDTTTGSEARIAREKLRVQAKVIRDAFDGAVAAAGREDTPVKDDADLHYLYRPGHALVRADRFEDVLDFFRRRENDFRGEPKHVSSPAPGLVLVALPSRRDEADDVLTTLAEIDKFFGRPEDSRSAPIASPDHVVYVTGTKPGLCPADEPSPPTPRAAQPWPRPTATRTRIRDEDRVRVAVVDTGLWTGAIGSPKSPWLEKGDVLADAEDIEVVDPNKIHPYAGHGTFVAGVVSCLAPDTRIEVEGVLTHGGAVLESEIVEQLHQAINDDNHPQVISISAGTHTRGDFASLAFEMLGSANKLSERDDILIVAAAGNDSSDKPFWPAAFDWVVGVGSVDPDGKVSDFSNVGESWVTVYARGRDHVNAFPKGTYTCYEPPNVGQVRTFDGLARWSGTSFSTPLVTGLVAARVRETGQSVRDAWKDVLGTATSTTDPRGGQIKVVGPLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFQ5</accession>
    <name>A0A0Q8VFQ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53297">
        <property type="protein sequence ID" value="KRC53297"/>
        <property type="gene ID" value="ASE19_13140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1368228at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359995" evidence="1">
        <location>
            <begin position="41"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="258" mass="27001" checksum="FBE33A16952F51B4" modified="2016-01-20" version="1">MHPAPQLARSPRLVLAAVLALGIVAVALALRMWQPSPVAAEQSVSSEIDTVDDLSAGKPASLGKPRDPLSIEELGYAEALAARALPASARTLAGEPGAELLSVDLASLDPDTTTRPVTVTYYDYAADEVLAVRVELYSGQVKGTDEAKGLQPAPAPSEAYAATKLLIESSDGRKLGTEYTAMTGHAITADDLIVTGGSYYSTSVTRADDACGRHRCVELQVQEPSGTYLSTADYVVDLSAQKVIVLVERDIESSLGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFT0</accession>
    <name>A0A0Q8VFT0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894767.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52834">
        <property type="protein sequence ID" value="KRC52834"/>
        <property type="gene ID" value="ASE19_10510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="373600at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="215"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="248"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="421"/>
            <end position="447"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="452" mass="51052" checksum="97B95682EC1227E1" modified="2016-01-20" version="1">MRVDAVLDWLSHWVDHVDWFAFVSIPFFTGIIGWLINWSGLWMLFKPIGFHGFRVPGLREIAGVLPRKLQEIPGWMDGGLGWQGIVPARAAKMGSIAVDKVIAKLGTPAEFYAQLEPDQIAEHIVNVFRPDLPSLVDEVMMREHPRLWRDLPNPVRQAVIDRVQAQLPGVVKTITDEIGVHINQLLDPKIMVIDHFRKNPELVVRVFKDVGQRELNLMVLFGFIFGFLLGIPVAIIDQTWHVETGNPAPWYLLPSLGIVVGWITNLLGMWLIFDPPEEKRILGIKVQGLFLRRQAECAEVYARIIADDVITLERIGDFLMDGPRGDRTRQMIATAMRPAIDKAAGPLRGAVNVALGGRRYDSIKDSFAQEAVGRTITPFRDAEFSRKQSEKIRVLIARRTKELPPKDFVEMMRSAIKEDEWMLYAHGAIMGAAGGFLHLGIFNWGWIPGFPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG20</accession>
    <name>A0A0Q8VG20_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Endo/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_13925</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897066.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53437">
        <property type="protein sequence ID" value="KRC53437"/>
        <property type="gene ID" value="ASE19_13925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1387978at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="38"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="3">
        <location>
            <begin position="116"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="354" mass="37107" checksum="8F1B6BF9CA3CD512" modified="2016-01-20" version="1">MSDDRPGEPADEGAGTPDESADAPKPPLPRAAVGPSPVAQVATAAVVVVVLVVLGVVFLVQGGGKKSALPEQDIDTVPTAPSSGFQPSRADPLPPLPSIPASLCPKAPLKKPLTVLTFNIHHGATKDEHLQLGRIGTEIKTWDPDIVLLQEVDQGRSRTGGIQQAEALAKATDLTWVYGGNQRSRGSGPIGNAILSRFPVVEWHNTLLPIASGREQRGLLHAVINVDGTEISAYATHFDHASGVARLAQARTTIKVLAADPRPKILAGDLNTGPGGAPIRALRSAGLGDAWAVGSGAGNTVPARNPRNRIDYVLHDGWFTPLQAVVLASGVSDHRAVWTRLEFRQELGCFKVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGF8</accession>
    <name>A0A0Q8VGF8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">BPL/LPL catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14685</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896934.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53568">
        <property type="protein sequence ID" value="KRC53568"/>
        <property type="gene ID" value="ASE19_14685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="871298at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004143">
        <property type="entry name" value="BPL_LPL_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03099">
        <property type="entry name" value="BPL_LplA_LipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51733">
        <property type="entry name" value="BPL_LPL_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BPL/LPL catalytic" evidence="1">
        <location>
            <begin position="21"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="220" mass="24061" checksum="BEFEEF0EDCEC46F8" modified="2016-01-20" version="1">MRLLEITGSIADFHSRPIPDDLVEAEVWSFRPPGRGLVLGSAQQEEIADLAAAGRAGVAVAKRRSGGGAVYVDPERCVWVDVVLPTHDERWSNDVREATYWLGEAWQRALGRIGLETRLYRGGLEQTPWGRLVCFAALGPGEVLVGDRKVVGISQRRTRAGARFQCIAYDRWDAADVLDLLAMTEADRVEAAADLATRATGVGDHLEELRAAVLDELLTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGJ5</accession>
    <name>A0A0Q8VGJ5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4261 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14690</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896933.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53569">
        <property type="protein sequence ID" value="KRC53569"/>
        <property type="gene ID" value="ASE19_14690"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1196248at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025357">
        <property type="entry name" value="DUF4261"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14080">
        <property type="entry name" value="DUF4261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4261" evidence="1">
        <location>
            <begin position="171"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="259" mass="27947" checksum="377D8FDD9DDAD58C" modified="2016-01-20" version="1">MLAILVQDAAPHPERAQISSTALAVRFLTDWRDVDRTKVETGDSQLTYGDLSVLWSTMNVPCPNDLALTCAHSRLWPPTAPPPVEHTRHTLVTTSPADGGRDRAELLTKAVASMVALDPSIRAVVWAPADHVTLPAAFREVAVDGQPAALMHAWVAFNVGNHPDGHLTGHTRGLGDLGLMDIEIQSTRRSAADTLEQLRGLAHYQLTEGRVIADGDTVGADARERIQVHHVPSAFDPSVTVLQIEPAAGGRKRGLFRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGT5</accession>
    <name>A0A0Q8VGT5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase</fullName>
            <ecNumber evidence="3">4.2.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02290</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.-.-" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892695.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56677">
        <property type="protein sequence ID" value="KRC56677"/>
        <property type="gene ID" value="ASE19_02290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1503081at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00002">
        <property type="entry name" value="YbaK_deacylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.960.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004369">
        <property type="entry name" value="Prolyl-tRNA_editing_YbaK/EbsC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036754">
        <property type="entry name" value="YbaK/aa-tRNA-synt-asso_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007214">
        <property type="entry name" value="YbaK/aa-tRNA-synth-assoc-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04073">
        <property type="entry name" value="tRNA_edit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006181">
        <property type="entry name" value="EbsC_YbaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55826">
        <property type="entry name" value="SSF55826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00011">
        <property type="entry name" value="YbaK_EbsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA_edit" evidence="4">
        <location>
            <begin position="39"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR006181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF04073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="167" mass="17199" checksum="6A3FE17BCB0DFE47" modified="2016-01-20" version="1">MAKRKAAGGTPATSALTAAGVAFTVHEYPHDPRAESYGTEAAEAMGIDPGRVFKTLFVDLDGALVVGVVPVVGQLDLKAIARALEGRKAVMADPRAAERATGYVVGGISPLGQRKAHPTVVDDSALAHATVFVSAGRRGLEVELSPAELVRLTAARVAPIRRGPTPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGT9</accession>
    <name>A0A0Q8VGT9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-nitropropane dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14585</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897133.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53693">
        <property type="protein sequence ID" value="KRC53693"/>
        <property type="gene ID" value="ASE19_14585"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004152">
        <property type="term" value="F:dihydroorotate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018580">
        <property type="term" value="F:nitronate monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04730">
        <property type="entry name" value="NPD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001295">
        <property type="entry name" value="Dihydroorotate_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004136">
        <property type="entry name" value="NMO"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03060">
        <property type="entry name" value="NMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00912">
        <property type="entry name" value="DHODEHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NMO" evidence="1">
        <location>
            <begin position="1"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="32724" checksum="FFDF08FB73C6755B" modified="2016-01-20" version="1">MAGGPSTVALASAVTDAGGFAFLPGGYLTAPAFDALLTEARAAGRPFGVNLFVPQPGALAPDDFATYRAELAGEAAALGVELPTGPTHDDDAWRDKLTLLLADPVPLVSLTFGLPDPSDIAALRAVGTRVLATVTTPGEALLAADAGVDGFVVQGPSAGGHSGTFDPRRPLVDVPTDSVVRAVRAASPLPVVAGGGVDGPAAVRELLAAGAEAVAVGTLLLRAHESGTSPTHRAALADPGFATTVVTRAFTGRPARGLLNGFIERHEPAAPYGYPEVHHLTRDLRRAAAAAGDPHRLHLWAGTGYRAAVEAPAAEIIRALVPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH96</accession>
    <name>A0A0Q8VH96_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05090</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894240.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54841">
        <property type="protein sequence ID" value="KRC54841"/>
        <property type="gene ID" value="ASE19_05090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1946927at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="178" mass="19086" checksum="86EE1EF69DCF71E6" modified="2016-01-20" version="1">MGWEDELFALFDDLEEQASALHAAERTAEVADRSRAEYQQVTLASRMMASVGTTVALGISGVGVVPGTVQRVAEGWLLLSSGDHDWVVHTAAIRSIEGASVRSVPEVAWSPLTRLSLGSALRRIAEAGEECVLRLVDGTRHDGVLRRVGADFCELVEGEDRRTVLVAFTALAAAQSRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHB3</accession>
    <name>A0A0Q8VHB3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Flagellar hook-basal body complex protein FliE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">fliE</name>
        <name evidence="4" type="ORF">ASE19_09245</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 3">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the FliE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894553.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52615">
        <property type="protein sequence ID" value="KRC52615"/>
        <property type="gene ID" value="ASE19_09245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1581972at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00724">
        <property type="entry name" value="FliE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001624">
        <property type="entry name" value="FliE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34653">
        <property type="entry name" value="PTHR34653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02049">
        <property type="entry name" value="FliE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01006">
        <property type="entry name" value="FLGHOOKFLIE"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00205">
        <property type="entry name" value="fliE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="4" id="KW-0966">Cell projection</keyword>
    <keyword evidence="4" id="KW-0969">Cilium</keyword>
    <keyword evidence="4" id="KW-0282">Flagellum</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="108" mass="11164" checksum="D31BA086461C4811" modified="2016-01-20" version="1">MDISPLQFPTVAGSAAVNPAMALSPSTAVQAPAGTDTEFGSMVLDGLDRLEGLTDKADGLAVQAATGKLENIHDYTIAASEASVASQLTVALRNKAVEAFNEIMRMQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHC4</accession>
    <name>A0A0Q8VHC4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acetyl-CoA acetyltransferase</fullName>
            <ecNumber evidence="7">2.3.1.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_03050</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.9" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892827.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56808">
        <property type="protein sequence ID" value="KRC56808"/>
        <property type="gene ID" value="ASE19_03050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1058688at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003985">
        <property type="term" value="F:acetyl-CoA C-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020615">
        <property type="entry name" value="Thiolase_acyl_enz_int_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020610">
        <property type="entry name" value="Thiolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00098">
        <property type="entry name" value="THIOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00099">
        <property type="entry name" value="THIOLASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="5">
        <location>
            <begin position="7"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="6">
        <location>
            <begin position="275"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="3">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="353"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="399" mass="40304" checksum="47A5E379A47FB92F" modified="2016-01-20" version="1">MSDNPSVIVAGARTPIGRHLGALKTLSAADLAGVAIKGALEKAGVSGDQVDYLIVGQVLQAGAGQNPARTAGLAAGLPANVPSITINKVCLSGINAIAQADQMIRAGEAEIVVAGGTESMTQAPHLLPKSREGFKYGDTTLVDSLAYDALFDQATQQGMGNLTESTNACRETPLTREEQDAVAARSHQLAAAAQKNGVFDDEIVPVSIPQRKGDPVVVSKDEGVRGDTTAESLAALRPAFSKDGTITAASSSQISDGAAAVVVTSKKKAEELGLPILAEIVSHGQVAGPDSTLQLQPANATKKALDKAGLTAADLDLVEFNEAFAAVGIESARALGIDEDKVNVNGGAIAIGHPLGASGARITLHLALELKRRGGGLGAAALCGGGGQGDALVLRVPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHJ8</accession>
    <name>A0A0Q8VHJ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_02935</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892807.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56788">
        <property type="protein sequence ID" value="KRC56788"/>
        <property type="gene ID" value="ASE19_02935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1345710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005066">
        <property type="entry name" value="MoCF_OxRdtse_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008335">
        <property type="entry name" value="Mopterin_OxRdtase_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000572">
        <property type="entry name" value="OxRdtase_Mopterin-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036374">
        <property type="entry name" value="OxRdtase_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03404">
        <property type="entry name" value="Mo-co_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00174">
        <property type="entry name" value="Oxidored_molyb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00407">
        <property type="entry name" value="EUMOPTERIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56524">
        <property type="entry name" value="SSF56524"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="SSF81296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_molyb" evidence="4">
        <location>
            <begin position="80"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="domain" description="Mo-co_dimer" evidence="5">
        <location>
            <begin position="293"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="392" mass="42870" checksum="909481C2B43407AF" modified="2016-01-20" version="1">MENALRRRSVLGVPLAGLATVGVGQLLGPAPRAWAGAPAIQKPLPPEWFVGYGTNAETRWDSVDPHRYATPQERLFVRNHTRTPQIDASSYRLRVFGDGLTDPAGVTLGLADLKRRFRTVAWTSVHECTGNGRSFFDTQQGTKASGTPWTLGAVGTVTWEGVRLRDVLRFAGLRPDAVSVQGAGLDDEYVDKGENLGRVRRPFPIAKALDDALLAWGIDGEPLLPDHGFPLRLVLPGWVGIASIKWLGELEVSTSELTSPWNTRWYNIGGPLGVNPVRSAWELPRDAQLPAGRTAVLTGRSWSGAAPIARVDVSTDGGTTWERARLRPAPGRRTEGHGWARWTHTWHAPRAGRHELLARATDLHGRTQPDVATFNPNGYFFDAVVRHPVTVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHP1</accession>
    <name>A0A0Q8VHP1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">LacI family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_02565</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893064.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57029">
        <property type="protein sequence ID" value="KRC57029"/>
        <property type="gene ID" value="ASE19_02565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1796334at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="5">
        <location>
            <begin position="16"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC57029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="347" mass="37026" checksum="7C82CD418B77165D" modified="2016-01-20" version="1">MNRPPSDTSAGQGAAPTLDEVASRAGVSRATASRAINGGNRVSATAQAAVETAVRELGYTPNPAARSLVTRRTDSVALVVPEPDERVFSDPFFVHTLRGVNRMLATRDLQLVLLLARPGEEERRLLRYLGSRHIDGAIVVSHHRNDRLADHLAALSLPCAFIGRPWTSADKVAYVDTDNLAGGRAATELLVERGCRRIATIAGPGDMAAGIDRLEGWRTTLRAAGLADDLVEHGDFTEVGGEAAARLLLERAPDLDGIVAASDLMAAGALRVLAEAGRVVPDDVAVVGYDDVGVPERTSPTLTTVRNPIGEMAEQAVRLLLEQIDDQRGPRPIRVIFPPSLVRRDSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI95</accession>
    <name>A0A0Q8VI95_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10880</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894835.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52903">
        <property type="protein sequence ID" value="KRC52903"/>
        <property type="gene ID" value="ASE19_10880"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360064" evidence="2">
        <location>
            <begin position="21"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="181" mass="18427" checksum="E9C7CB87BF36054A" modified="2016-01-20" version="1">MHLRFLVVALALSLGTAGCGEDPDVDRTGDDPTTVATSGSPTADPTTACAELIPDTALTSLGWTASAAAGEQAGRCERSAGSSVVTVGAVGTGRDRYDERCALLPRDNAPEPEVDPDWIGTDVTACVRAFPTGADTGVAKAVLLTDDDRVVEIQLAADVPTPGERLRAGLAALASSAEATY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIM9</accession>
    <name>A0A0Q8VIM9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GTP pyrophosphokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57352">
        <property type="protein sequence ID" value="KRC57352"/>
        <property type="gene ID" value="ASE19_23765"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015969">
        <property type="term" value="P:guanosine tetraphosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05399">
        <property type="entry name" value="NT_Rel-Spo_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007685">
        <property type="entry name" value="RelA_SpoT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04607">
        <property type="entry name" value="RelA_SpoT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00954">
        <property type="entry name" value="RelA_SpoT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RelA_SpoT" evidence="1">
        <location>
            <begin position="56"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="210" mass="23518" checksum="D0B67F1DC6FAA306" modified="2016-01-20" version="1">MSTASVPLPDEARAQEIGQFLLNYKFGLDEMLTKINILREELAFRGTGNPIEHVSSRLKSIESLRAKAARIGCPLELDAIAEQITDIAGVRIVCAFIADAYQVLDMLTTQPDVTVRVIKDYVARPKPNGYRSLHAIVEIPVFLSEDMRRVPIELQIRTVAMDFWASVEHKIYYKYDKDVPAELVGELAAAARVAADLDQRMAELHRTVHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIY9</accession>
    <name>A0A0Q8VIY9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894388.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55155">
        <property type="protein sequence ID" value="KRC55155"/>
        <property type="gene ID" value="ASE19_05975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1054546at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="1">
        <location>
            <begin position="17"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="327" mass="34832" checksum="27CF212DAAD5B2CD" modified="2016-01-20" version="1">MPTRTLGTTSSLTVSTLGLGCMGMSEFYGTPDEAGGIATIHRALDLGVTFLDTADMYGPFTNERLVGKAIAGRRDEVQLATKFGNERNPDGSWVGINGHPDYVRRAADASLERLGVDHIDLYYQHRVDKTVPIEETIGAMKELVEAGKVRHLGLSEASAATIRRAHAVHPITALQSEYSLFTRDLEDTILPTLRELGIGLVPYSPLGRGMLTGAVPTTEAADDARASGRFPRFQGDNLAANLALVDQVKALAAEHGCTPGQLALAWVLAQGDDVAPIPGTKRVRYLEENVGAVDVELSADDLAALEAAIPRDAVAGDRYGDLSSIDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJJ9</accession>
    <name>A0A0Q8VJJ9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Alpha-amylase</fullName>
            <ecNumber evidence="2">3.2.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_23530</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Endohydrolysis of (1-&gt;4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1-&gt;4)-alpha-linked D-glucose units.</text>
            <dbReference type="EC" id="3.2.1.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.1" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893939.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57733">
        <property type="protein sequence ID" value="KRC57733"/>
        <property type="gene ID" value="ASE19_23530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="54253at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004556">
        <property type="term" value="F:alpha-amylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013784">
        <property type="entry name" value="Carb-bd-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008969">
        <property type="entry name" value="CarboxyPept-like_regulatory"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49452">
        <property type="entry name" value="SSF49452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49464">
        <property type="entry name" value="SSF49464"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360107" description="Alpha-amylase" evidence="3">
        <location>
            <begin position="31"/>
            <end position="631"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012595"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="631" mass="65098" checksum="F0C43EA6EE40018C" modified="2016-01-20" version="1">MKLRSALLPTLIALLASLLAVLGPLPPAVADPAPAQVTGTVIDAVTSDLLAGAHVAFYADVDENGMPDGAAIASTVATDGSFDVFVPAGSVVGIAEAEGYEPRQTEVLHLVSAEETILQLDLTPIDDGTGTGTVSGFAADALANTPLAGAAVSIYADADVDGQPDGAAVATTSAAVNGTWELTVPAGKYVIQVAHPTYETWSSYPGRAPVTVTSGGSITNVEAYLQRVPPTTGHVSGHVTDQDTAAGIAGATVVVYKDDDGNGFPDEANPVALTTTDAEALWASTLPVGSYVASASAEDYDSGVHGTFTVTAGGELTVDFALEPTTPPGELGSTIAGLLTDTAGTPLGGIEVCAWTASDTIQACVDTDADGRYALAGLPAGSYRICYNDRLPAPGEWATYEMLRWYLDKGSRPFVTPVVVDGTVTTTTLSTVRLRKLARIKGVVGAPALVGATSAAGTVEVYDEDGERVAVAPISSNGAYEVGGLLPGAYRVKASGSRFIGNDEYPYIRQFWSRRYSFASATPIALGVGEVRTGIDILLGRTLLATARPVITGRRIVGATLRAGRGTWNRQVGTTYTFTWRRGTRVLSHAATYRVVRADAGRALTVTVTAKDPDGWLLSGSSAATTGVIRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK16</accession>
    <name>A0A0Q8VK16_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">DNA repair protein RecO</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7 8">Recombination protein O</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">recO</name>
        <name evidence="10" type="ORF">ASE19_23525</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 8">Involved in DNA repair and RecF pathway recombination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the RecO family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893938.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57732">
        <property type="protein sequence ID" value="KRC57732"/>
        <property type="gene ID" value="ASE19_23525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1758685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00201">
        <property type="entry name" value="RecO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037278">
        <property type="entry name" value="ARFGAP/RecO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022572">
        <property type="entry name" value="DNA_rep/recomb_RecO_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003717">
        <property type="entry name" value="RecO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042242">
        <property type="entry name" value="RecO_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33991">
        <property type="entry name" value="PTHR33991"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02565">
        <property type="entry name" value="RecO_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11967">
        <property type="entry name" value="RecO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57863">
        <property type="entry name" value="SSF57863"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00613">
        <property type="entry name" value="reco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5 8" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="6 8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_rep/recomb_RecO_N" evidence="9">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00033409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF11967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC57732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="250" mass="27422" checksum="04FB2ADB67AFE328" modified="2016-01-20" version="1">MPLYRDEAIVLRTHKLGEADRIITMLTRENGRIRAVAKGVRRTTSRWGSRLEPFTHVDLQLAEGRNLDTVTQAETRGAYAASIGLDYERYTAGTAMLETAERLVVEEREPARQQFALLLGALNAMATGNRRPGHVMDSYLLRSLAIAGYTPAFVDCAHCGRPPVTATGELVNHRWFNPSMGGVLCSTCRIPGSATPAAETLTLLGALLAGNWPVVEAAEPRHVKEANGLVAAFVQWQLERGLRSLAYVER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK38</accession>
    <name>A0A0Q8VK38_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09010</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895610.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54178">
        <property type="protein sequence ID" value="KRC54178"/>
        <property type="gene ID" value="ASE19_09010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="94" mass="10178" checksum="F873AAC121068AD7" modified="2016-01-20" version="1">MTDAEQQFADYLSRQPGHAFGDVLSASGKSMQPISRAAHEAAANLLDKAARALDAGESERADHFIARACRIAFDRHEGTHPAAWVAATWTSSPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKH1</accession>
    <name>A0A0Q8VKH1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">NAD(+) diphosphatase</fullName>
            <ecNumber evidence="2">3.6.1.22</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_04555</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.22" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894329.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54753">
        <property type="protein sequence ID" value="KRC54753"/>
        <property type="gene ID" value="ASE19_04555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1435118at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000210">
        <property type="term" value="F:NAD+ diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015376">
        <property type="entry name" value="Znr_NADH_PPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09297">
        <property type="entry name" value="zf-NADH-PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0520">NAD</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="7">
        <location>
            <begin position="157"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC54753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="303" mass="33001" checksum="32CAA3E8D7B149AB" modified="2016-01-20" version="1">MTFPHLSLVADPHDRRGLLRTDEDWLQQRWEDPASRVLVIAGTLVRPGPDGLEWVPSADAPDGVRLLLGDRDGTTWWAVVIDGALARTEPERWLPLRGLLPYLGGDAAAQAPLVFHAIGLAEWLWAHRFCPRCGGALTPRAAGHELVCTDCGKPQFPRSDPAVIMLISAGEPGSAEERCLLGRGATWPQGRFSTLAGFCEPGETLEDAVRREVLEETGVAVGEVTYFGNQPWPLPSSLMLGFHGRAVSEDIVLDDADVEEAQWFTREQMRAGAEEGSLVLPGGVSISRSLIEHWYGGTLPGSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKT7</accession>
    <name>A0A0Q8VKT7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05040</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894249.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54832">
        <property type="protein sequence ID" value="KRC54832"/>
        <property type="gene ID" value="ASE19_05040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="74" mass="8333" checksum="A813585C7FB7C241" modified="2016-01-20" version="1">MSPAEQLRSRARHAAEVTGLLRVRRQRARVDELETAVRENAVLGAGLHELLGQLEQQLVPLLERRVRGSEGPRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLV7</accession>
    <name>A0A0Q8VLV7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PPM-type phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05820</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894393.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55149">
        <property type="protein sequence ID" value="KRC55149"/>
        <property type="gene ID" value="ASE19_05820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1835483at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006470">
        <property type="term" value="P:protein dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00143">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015655">
        <property type="entry name" value="PP2C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13832">
        <property type="entry name" value="PTHR13832"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="2">
        <location>
            <begin position="6"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="240"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="263" mass="27066" checksum="C425DC2B836A95CD" modified="2016-01-20" version="1">MDVTIELGAATDVGRVRPHNEDAYLAREHVAAVADGMGGHAAGDVASARAIEALESVVEGEGLRAEDIQTALDRANEAILAEVALAPEKSGMGTTLAGVALIQYGGSPHWIVFNIGDSRVYRIADGQALQLTVDHSEVAELMALGRITAAEAAVHPLRNVITRSLGTTPAPRADLWIFPASPSGDTFVACSDGLTNELDDTTIATIVTGARGPGDAAAELVASAVDAGGRDNITAVVVHGVPKDDDEPSAATAPRPAIEEGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMB9</accession>
    <name>A0A0Q8VMB9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lysine transporter LysE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_05140</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894231.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54850">
        <property type="protein sequence ID" value="KRC54850"/>
        <property type="gene ID" value="ASE19_05140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1927576at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006324">
        <property type="entry name" value="LeuE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="35"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="107"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="142"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="203" mass="20949" checksum="78087EBEB4948A18" modified="2016-01-20" version="1">MSTAFLLTSLVIVATPGTGALYAIAAGLTRGTRAAILAAFAGTLGTIPHLVAAVTGLAALLHASGVAFAVLKYAGVAYLLFMAWSTWRDRGALTVDEDAAETGSARAVLVSGITLNLLNPKLTIFFFAFLPQFVPAGSGAVPAMLGLSAVFMAMTFVVFAAYGACAAAVRDQVLSRPKVVDRMRKAFAASFAVLAGRLAFESR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNB7</accession>
    <name>A0A0Q8VNB7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Heme ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_05890</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55154">
        <property type="protein sequence ID" value="KRC55154"/>
        <property type="gene ID" value="ASE19_05890"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="PTHR30472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="19"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="79"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="111"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="137"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="169"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="211"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="255"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="300"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="328"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC55154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="357" mass="36814" checksum="79CCF187F8B867C2" modified="2016-01-20" version="1">MAVAPAVPVTDGRRRRRIALLYAGLVLGLVATTLVAGGSGQLQIPLDEILGSIAHRVGLDVGPMPTHPRGEYTLWNVRFSRIAMAVVVGASLAVAGAAMQGVFGNPLAEPSVVGISSGAAVAAGAAIVFGLRFAGDWSIPVCAFLGGLVTTLLVYALSRSDGRTEVVTLVLTGIAVNAVSSALLALLMFLGDTQARESIVFWQLGSLNGSRWSYVLVVAPLAAVGIAVALACARSLDLLALGERSARHLGVNVEALRIILIVVVALLTAAAVSFCGIVAFVGLVVPHLVRMVTGPGHRTLLIASALAGALVLICADTVARTAVAYTDLPLGMLTSLVGGPFFFWLLRRTRRTAGGWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNL3</accession>
    <name>A0A0Q8VNL3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">FAD-linked oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_22750</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892597.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58886">
        <property type="protein sequence ID" value="KRC58886"/>
        <property type="gene ID" value="ASE19_22750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="482388at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003885">
        <property type="term" value="F:D-arabinono-1,4-lactone oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007173">
        <property type="entry name" value="ALO_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010031">
        <property type="entry name" value="FAD_lactone_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43762">
        <property type="entry name" value="PTHR43762"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04030">
        <property type="entry name" value="ALO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000136">
        <property type="entry name" value="LGO_GLO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="3">
        <location>
            <begin position="12"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC58886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="435" mass="47595" checksum="E22FBC6C42A4D51D" modified="2016-01-20" version="1">MSSSWRNWSGLESADGLRSVSPTNATEVAEVVTRARAAGETVKAAGTGHSFTGIATPQHVHLLPTGMRGIVSVDRDAMTVTAQAGTQLKVFNAELERLGLSLHNMGDIAEQTLAGAVSTGTHGTGGRAAGLAAQVVGFELVTGTGEVLRASADENPDLLALGRAGLGALGVLTTLTFAVEPLFLLRAEEQPMSWDDAMAAFDDLTAAHDHVDMYWFPHSDRMLTKRNTRMGTDLSAAEPLARWRAWLDDDLLSNTVFGAQTALLNRVPRAIPAANRFASRLLGPRTYTDAAHRVFTTERRVVFREMEYAVPRAAGLTALRECRTAFERSALSVSFPVEIRVAPADDVALSTSYDRDSFYLAFHTHRGADHRAYFALMEAIMRDHEGRPHWGKLHHLDAGDLADRYPRFTEFTALRDRLDPDRVFANPYLDRVLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPV8</accession>
    <name>A0A0Q8VPV8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00010</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896874.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59468">
        <property type="protein sequence ID" value="KRC59468"/>
        <property type="gene ID" value="ASE19_00010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="257" mass="25943" checksum="8B70D93FC3A6BF6E" modified="2016-01-20" version="1">MNGTPRTIVVTGAASGIGATTAELLRSRGDRVISVDLRSADVCADLSSPSGRADAVAGVATLVGDGVLDGLVTCAGLSRAGARQVSVNYFGTVDLVTGLRPLLARSAAPRVALVSSISSTQPADAAVVDACLAGSEPDALAAAEAAVAAGRPHEIYASTKAALNRWLRRTAVSEEFAAAGIAVNAIAPGVVLTPMTEELVSDPQWKAVMDAAVPMPLNGYAPPEAIAHALLWLLAPENTHMAGQVVFVDGGAEALTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQJ2</accession>
    <name>A0A0Q8VQJ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01970</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892641.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56624">
        <property type="protein sequence ID" value="KRC56624"/>
        <property type="gene ID" value="ASE19_01970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1515497at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="39"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="25215" checksum="2B2E1CAAEA5CC2AF" modified="2016-01-20" version="1">MDAEEIARSAALERRHWWYAARRALVRRTVRDWPTGRAIDVGCGMGGNTVVLRELGWQAVGVEYTSTGAEIAASRGIPVLRGDGQRLPVADGSVDLVMSTDAWEHIDDDVAVAAETARVLRPGGRVLVAVPAGMALWSGHDVALGHVRRYERDQLADLVRGAGLVIDQLSSWNVLLRPVVRARRRNKDAPESEMEAVHPVLNAGLRAAVGMERVLPLKRLPGVSLVVVAHKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQP3</accession>
    <name>A0A0Q8VQP3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892767.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56749">
        <property type="protein sequence ID" value="KRC56749"/>
        <property type="gene ID" value="ASE19_02700"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007047">
        <property type="entry name" value="Flp_Fap"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04964">
        <property type="entry name" value="Flp_Fap"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="62" mass="6489" checksum="212D577D43E5B308" modified="2016-01-20" version="1">MVQYLQILLNARLAKMDERGATAVEYGLLVALIAVVIIVGVRLLGTNLSDMFNGVAGDVGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR01</accession>
    <name>A0A0Q8VR01_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">MFS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_00945</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59622">
        <property type="protein sequence ID" value="KRC59622"/>
        <property type="gene ID" value="ASE19_00945"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="42"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="75"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="104"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="134"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="165"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="190"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="229"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="268"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="294"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="325"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="354"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="394"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="1"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="423" mass="42981" checksum="89026F1935B0DF13" modified="2016-01-20" version="1">MPSIARTFDHDPAAVTQALVATYLIAAIALQGPGGKLGDRLGHWRVCALGQAAMGVGAVVGFLAPNLWTLSGSRILMATGGALAVPATVALLRIELPPARRARAFGTFGAIMASAAALGPILGGALVDAFDWEAVFLANLPVLAVAALLMAGVDRRRDVRADGAFDWPGSVLLTGALASLVLGAEGTGGGERGVVLVGAGLVLLVAFVVRERRAADPVVDLAIFRTRAFTAGTLLVCLQNLVMYALIFELPLVLERLFDLGARETGQLLLWLMVAMVLLSLVAGRLTERLGPRALAVTGALACLAGMVLLQASDLGAPGDVRLPLALLGVGLGLCSPAAQTASLSAIDPGRSGMAAGVGSTMRYLGGVAGVATLGRMLDLQGSAAAVLSSHHQVTAVFTGVLVAALGCACLLPGLGEDRRDLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRC6</accession>
    <name>A0A0Q8VRC6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01645</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896589.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59750">
        <property type="protein sequence ID" value="KRC59750"/>
        <property type="gene ID" value="ASE19_01645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275789at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="254" mass="27232" checksum="884BF34524037A72" modified="2016-01-20" version="1">MESTDHLLCQRQDGYAVVTLNRPERYNALNHALVADLRELMAKLDAEADVRAIVLTGTGKAFCAGADLNAGPSDVEDVIRRLYIPLVEQLAAMDTPVIAAVNGPAAGAGFSLALNADFRLASTKASFSMSFVKVGLVPDAGATWLLPRIVGATRATEIALLGRKVTAEQALAWNLVNELIPSEDLLWRATALAAEIAALSASVGPIRQLLRAGQSVDLPTQLDAEAVAQGRAQQHPHYEEAKQAFVEKRAPRFW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRN0</accession>
    <name>A0A0Q8VRN0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02275</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892692.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56674">
        <property type="protein sequence ID" value="KRC56674"/>
        <property type="gene ID" value="ASE19_02275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047542at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="11"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="204" mass="21794" checksum="470E45C723B61374" modified="2016-01-20" version="1">MATDGRRERGDRTRQRAARAAARMATVGGLDAITLGGLAEATGASKSGLLAVFGTREDILVAAVAEARTLYVEHVVAPAWGERAGAPRLRALLDRWVDYLRAEVFPGGCFVAASSAEYGHREGRVADAVRALKREWLDLLERDLATAGVPDPGEAAFRIDAYLVAANTRRELFGDDAALDTARRLAGELVPAGVTGTGRKRRQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSL2</accession>
    <name>A0A0Q8VSL2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03645</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57058">
        <property type="protein sequence ID" value="KRC57058"/>
        <property type="gene ID" value="ASE19_03645"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041678">
        <property type="entry name" value="TetR_C_16"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17920">
        <property type="entry name" value="TetR_C_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="183" mass="19790" checksum="33DB8778E1005092" modified="2016-01-20" version="1">MRPAGLATRAAIEEAARRLFAERGFDASVRSIAAEAGVDPALVIRHFGSKEALFLRCIDTSGSIGAVLDGPIETVGRRLIAYFLEPGRPLTRQRYLALAQAAHLDQVREEMNRHTAETYVAALAPRLTGEDRELRVALAVAQLGGLLNLLFRQEDPIVTAADADAVVALYGDAIQHLLTPEHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTQ0</accession>
    <name>A0A0Q8VTQ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892549.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58937">
        <property type="protein sequence ID" value="KRC58937"/>
        <property type="gene ID" value="ASE19_23045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="112"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="210"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="254"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="279" mass="29721" checksum="2ACB71190B12E139" modified="2016-01-20" version="1">MAVVGQVAGDAYKSGRSTLEGYGDQLLFYAKALAWAPRAIRRYPREISNTLAEVAFGAGGLSLILGSVGVIAFMAFFAGTEVGIQGYASLSQIGVAKFSAFISAYFNTREVAPLVSSIALAATVGCGYTARLGAMRISEEIDALEVMGIPSLPFLVTTRMIAAFVAVIPLYIVALCASYLSPRLIVVYIYGQSGGTYDHYFLQFLPPIDMIWSFFKLLFLAVAVILIHCYYGYTASGGPAGVGRAVGKAIRTSIVTIVVADFFLSFAIWGSTTTVRITG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTW0</accession>
    <name>A0A0Q8VTW0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Riboflavin biosynthesis protein RibD</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="10">Diaminohydroxyphosphoribosylaminopyrimidine deaminase</fullName>
                <shortName evidence="10">DRAP deaminase</shortName>
                <ecNumber evidence="10">3.5.4.26</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="10">Riboflavin-specific deaminase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="10">5-amino-6-(5-phosphoribosylamino)uracil reductase</fullName>
                <ecNumber evidence="10">1.1.1.193</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="10">HTP reductase</fullName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="15" type="ORF">ASE19_23195</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 10">Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + H(+) + H2O = 5-amino-6-(5-phospho-D-ribosylamino)uracil + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:21868"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:58453"/>
            <dbReference type="ChEBI" id="CHEBI:58614"/>
            <dbReference type="EC" id="3.5.4.26"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>5-amino-6-(5-phospho-D-ribitylamino)uracil + NADP(+) = 5-amino-6-(5-phospho-D-ribosylamino)uracil + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:17845"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58421"/>
            <dbReference type="ChEBI" id="CHEBI:58453"/>
            <dbReference type="EC" id="1.1.1.193"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10 13">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="10 13">Binds 1 zinc ion.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 2/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 3/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 10">In the C-terminal section; belongs to the HTP reductase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">In the N-terminal section; belongs to the cytidine and deoxycytidylate deaminase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.26" evidence="10"/>
    <dbReference type="EC" id="1.1.1.193" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC59001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893034.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59001">
        <property type="protein sequence ID" value="KRC59001"/>
        <property type="gene ID" value="ASE19_23195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1775351at2"/>
    <dbReference type="UniPathway" id="UPA00275">
        <property type="reaction ID" value="UER00401"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008703">
        <property type="term" value="F:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008835">
        <property type="term" value="F:diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016192">
        <property type="entry name" value="APOBEC/CMP_deaminase_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004794">
        <property type="entry name" value="Eubact_RibD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002734">
        <property type="entry name" value="RibDG_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01872">
        <property type="entry name" value="RibD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006769">
        <property type="entry name" value="RibD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="SSF53597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00326">
        <property type="entry name" value="eubact_ribD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00903">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 10 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="10 12" id="KW-0521">NADP</keyword>
    <keyword evidence="10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-0686">Riboflavin biosynthesis</keyword>
    <keyword evidence="8 10 13" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="14">
        <location>
            <begin position="1"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="11">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="262"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="264"/>
            <end position="270"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR006769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR006769-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR006769-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR006769-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC59001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="350" mass="37392" checksum="66302D4B4F8087AA" modified="2016-01-20" version="1">MRRAIALAASPGVPLHPNPRVGCVLLAEDGTVVGEGYHHGAGTPHAEVEALAVAGDRTRGATAVVTLEPCNHTGRTGPCAQALIAAGVRRVVVAQRDPNPLAGGGRETLLEAGVEVEDGLLADEAAALNRAWTFAHLNGRPFVTWKFATTLDGRSAASDGSSRWVSSLPARRDTHLLRALCDTMMVGTGTVEVDDPQLTVRDDDDQPLAHQPLRVVVGDRDLPADRRIFDDAAETLHLRTHDPLDALRTLYSEHDRHHVFLEGGPTLAAAFLKAGVVDEVITYVAPLLLGSGRSAVGRLGIRSIDKALRLEITDTTVVGEGADANVRLVLRPVHEVSRLTSSHLNHREEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW80</accession>
    <name>A0A0Q8VW80_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22680</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893047.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58989">
        <property type="protein sequence ID" value="KRC58989"/>
        <property type="gene ID" value="ASE19_22680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="83"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="333"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="412" mass="43831" checksum="3C3690F930AD8DB5" modified="2016-01-20" version="1">MVAGDRVALLVPGSHAYVEGVWRLLTAGIFPIPLDPRLTASERTRILSGLSPSLVVTTAAELAALLDSLPEPGLPLGRPMHCTSGTTGVPKGVFSGLLSPADATALWAEEQSLWGFTSSDVNLVLSPLYHSAPLRFGLGTLLAGGRLVIPGPFDPAAVTAAIASERPTTMFCVPTHLQRLFAHWDEVGVPDLSSFRLVAHAGAPCPVEVKRRLIELFPPGSTWEFYGSTEGQFTACRSEEWLTRPGTVGRARPGRSMSVDPDGTLWCSVPPFASFTYSGAPEKTAAAWRDLPDGGRAFSVGDLGRIDAEGYVHLDGRREDLVISGGVNVYPTEVEQVLGECPGVVEVAVFGVPDAEWGQRVCAAVVGTATEAELDAYARANLAPPKRPKSWSFVDALPRTLTGKVLRRELGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWX2</accession>
    <name>A0A0Q8VWX2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">1-deoxy-D-xylulose-5-phosphate synthase</fullName>
            <ecNumber evidence="8">2.2.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">1-deoxyxylulose-5-phosphate synthase</fullName>
            <shortName evidence="8">DXP synthase</shortName>
            <shortName evidence="8">DXPS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">dxs</name>
        <name evidence="10" type="ORF">ASE19_22885</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO2</text>
            <dbReference type="Rhea" id="RHEA:12605"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="2.2.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
        <text evidence="8">Binds 1 thiamine pyrophosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 8">Metabolic intermediate biosynthesis; 1-deoxy-D-xylulose 5-phosphate biosynthesis; 1-deoxy-D-xylulose 5-phosphate from D-glyceraldehyde 3-phosphate and pyruvate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 8">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the transketolase family. DXPS subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.7" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917920.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58912">
        <property type="protein sequence ID" value="KRC58912"/>
        <property type="gene ID" value="ASE19_22885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="566385at2"/>
    <dbReference type="UniPathway" id="UPA00064">
        <property type="reaction ID" value="UER00091"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008661">
        <property type="term" value="F:1-deoxy-D-xylulose-5-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052865">
        <property type="term" value="P:1-deoxy-D-xylulose 5-phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02007">
        <property type="entry name" value="TPP_DXS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00315">
        <property type="entry name" value="DXP_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005477">
        <property type="entry name" value="Dxylulose-5-P_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020826">
        <property type="entry name" value="Transketolase_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033248">
        <property type="entry name" value="Transketolase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43322">
        <property type="entry name" value="PTHR43322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13292">
        <property type="entry name" value="DXP_synthase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02780">
        <property type="entry name" value="Transketolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00204">
        <property type="entry name" value="dxs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00802">
        <property type="entry name" value="TRANSKETOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="6 8" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="4 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Transket_pyr" evidence="9">
        <location>
            <begin position="315"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="region of interest" description="Thiamine pyrophosphate binding" evidence="8">
        <location>
            <begin position="114"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Thiamine pyrophosphate binding" evidence="8">
        <location>
            <begin position="146"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="175"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="286"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="366"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC58912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="638" mass="68200" checksum="7F8AE4AF40150CD6" modified="2016-01-20" version="1">MPVLESISHPRDLRALSEDELTQLAAEIRDLMIRTVATNSGHLGPNLGVVELTLAIHRVFDSPRDKIVFDTGHQSYVHKLVTGRAGDFGTLRREGGLSGYPSQAESEHDIVENSHASTALSYADGLAKAYAIRGEDRHTVAVIGDGALTGGMAWEALNNIAIQHDSKLVIVVNDNGRSYTPTIGGLATALTSLRTNPRYETVLDIVKRRLTAVPGVGAAAYDALHAMKKGLKDALAPQGLFEDLGLKYVGPVDGHDRAAMEQALGQAKRFGGPVIVHAITRKGFGYDPAERHEADQFHAPGPFDVQTGAEKPKGLIWTDHFADHIVRIGERRSDIVGITAAMMHPVGLDKFQARFPERTFDVGIAEQHAATSAAGLALGGLHPVFAVYATFLNRAFDQVLMDVALHRCGVTFVLDRSGVTGDDGASHNGMWDMSILQVVPGLRLPXXXAPRDVTRMRELLDEAVEVSDAPTVVRFPKGPPPEDVEAVGKAGGCDVLVRDGARDVLVVSVGAMAPIALDVAARLRDQGIGVTVVDPRWVKPVDPALVELARTHRRVVTIEDNGIVGGVGAVLLQTLAEAGVATPVRLHGIPQEFLDHAKRGAILDRIGLTASTIALQAVHDITAEPAEDRSLLDVDGSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYK1</accession>
    <name>A0A0Q8VYK1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">MerR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_00515</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896788.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59552">
        <property type="protein sequence ID" value="KRC59552"/>
        <property type="gene ID" value="ASE19_00515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2076478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015689">
        <property type="term" value="P:molybdate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041657">
        <property type="entry name" value="HTH_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004606">
        <property type="entry name" value="Mop_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010093">
        <property type="entry name" value="SinI_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005116">
        <property type="entry name" value="Transp-assoc_OB_typ1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12728">
        <property type="entry name" value="HTH_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03459">
        <property type="entry name" value="TOBE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01764">
        <property type="entry name" value="excise"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51866">
        <property type="entry name" value="MOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mop" evidence="3">
        <location>
            <begin position="65"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="137" mass="14378" checksum="12D040C30510071B" modified="2016-01-20" version="1">MSEYRVAEAADLLGVSTDTVRRWIDGGRVPAATADGRTVVDGADLAALAASLVDDAEKDRTRAGEVSARNRMTGIVTRVVADTVMAQVEMVCGPYRVVSLMSAEAATELGLAPGVRAIASVKSTSVVVERPVPRKNH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYQ4</accession>
    <name>A0A0Q8VYQ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Butyryl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_01800</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896562.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59777">
        <property type="protein sequence ID" value="KRC59777"/>
        <property type="gene ID" value="ASE19_01800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="5"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="122"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="230"/>
            <end position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="385" mass="42418" checksum="43755269BEBFD70C" modified="2016-01-20" version="1">MFELTEEQQELKNLARRFAREQYSDLSRQWDRDRTHFPAEERKKIADLGLLALALPEEYGGGGRPLIDALIVQEEFAKANQLCAWPLFEASAGPARVIHLFGTEEQKQKFLPPVTRGEKIIAISISEPDAGSAATDVKTKARIEGDEVVINGAKRWCSGGGVAEQYLVYVRFSDTPGGKGMGAVVVDKDTPGLTFGPQEHLMGHRGVGSADMFFDDVRVPLENVIIPEGGFSKLFTAFSIERLGNSTMCLAIAQEALDRTAAYVQERQQFGKAIVDFQATQIALADMISQVDIARLLIYRAASNAGDGAPQQLEASLAKCFANEMVKKVTDLAIQLHGGYGYSEEYEIERMHRDAVGWAIAGGTPTIQRTRIVSEYLGRRFDQRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZP9</accession>
    <name>A0A0Q8VZP9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="12 13 14">UvrABC system protein B</fullName>
            <shortName evidence="13">Protein UvrB</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Excinuclease ABC subunit B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">uvrB</name>
        <name evidence="18" type="ORF">ASE19_23025</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <reference evidence="18 19" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10 13">The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11 13 14">Forms a heterotetramer with UvrA during the search for lesions. Interacts with UvrC in an incision complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 13 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="13">The beta-hairpin motif is involved in DNA binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 13 14">Belongs to the UvrB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892551.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58935">
        <property type="protein sequence ID" value="KRC58935"/>
        <property type="gene ID" value="ASE19_23025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="95696at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009380">
        <property type="term" value="C:excinuclease repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009381">
        <property type="term" value="F:excinuclease ABC activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00204">
        <property type="entry name" value="UvrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001943">
        <property type="entry name" value="UVR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036876">
        <property type="entry name" value="UVR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004807">
        <property type="entry name" value="UvrB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041471">
        <property type="entry name" value="UvrB_inter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024759">
        <property type="entry name" value="UvrB_YAD/RRR_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24029">
        <property type="entry name" value="PTHR24029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12344">
        <property type="entry name" value="UvrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17757">
        <property type="entry name" value="UvrB_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46600">
        <property type="entry name" value="SSF46600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00631">
        <property type="entry name" value="uvrb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 13 14" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 13 14" id="KW-0228">DNA excision</keyword>
    <keyword evidence="9 13 14" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8 13 14" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="4 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13 14" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="16">
        <location>
            <begin position="35"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="17">
        <location>
            <begin position="439"/>
            <end position="605"/>
        </location>
    </feature>
    <feature type="domain" description="UVR" evidence="15">
        <location>
            <begin position="665"/>
            <end position="700"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Beta-hairpin" evidence="13">
        <location>
            <begin position="101"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="48"/>
            <end position="55"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025647"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00026033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00029504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="KRC58935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="709" mass="80120" checksum="384BCE68C10EFE73" modified="2016-01-20" version="1">MRPVTDLERRVAPFHVQSDYSPSGDQPAAIAEITKRLNDGVQDVVLLGATGTGKTATVAWVAEQVQRPMLVLQPNKTLAAQFANELRQLFPGNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVSTVSCIYGLGTPQEYVDRMVRLRVGEEHDRDSVLRRLVEIQYTRNDLAFTRGTFRVRGDTLEIFPVYEELAVRIEFFGDEIERLMTLHPVTGEVLTEDQELYVFPASHYIAGPERMERAIRGIEAELAEQLATFERQGKMLEAQRLRMRTTYDVEMMRQVGSCSGIENYSMHMDGRGRGTAPNTLLDYFPEDFVLVVDESHVAVPQVGGMYEGDMSRKRNLVEHGFRLPSAMDNRPLRWEEFLERIGQTVYLSATPGDYELDKVQGDVVEQIIRPTGLVDPEVVVKPTKGQIDDLIHEIRTRAEKNERVLVTTLTKKMSEDLTDYLLDAGIRTRYLHSEVDTLKRIELLRDLRLGLYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDKSLIQTIGRAARNVSGEVHMYADKITPSMESAIDETNRRRARQVAYNEAHGIDPQPLRKKIADITEMLAREDETTQELLQTWADAGIKGRAGGVKAKKSPTPQLRSTDIGGHAAELAGMPSADLAQLIQDLTDQMKGAAAELQFELAARLRDEIGELKKELRQMMEATK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMC4</accession>
    <name>A0A0Q8UMC4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Magnesium chelatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20000</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895928.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46152">
        <property type="protein sequence ID" value="KRC46152"/>
        <property type="gene ID" value="ASE19_20000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="581802at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045006">
        <property type="entry name" value="CHLI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004482">
        <property type="entry name" value="Mg_chelat-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025158">
        <property type="entry name" value="Mg_chelat-rel_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000523">
        <property type="entry name" value="Mg_chelatse_chII-like_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32039">
        <property type="entry name" value="PTHR32039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32039:SF7">
        <property type="entry name" value="PTHR32039:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01078">
        <property type="entry name" value="Mg_chelatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13335">
        <property type="entry name" value="Mg_chelatase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00368">
        <property type="entry name" value="TIGR00368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mg_chelatase" evidence="1">
        <location>
            <begin position="201"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="domain" description="Mg_chelatase_C" evidence="2">
        <location>
            <begin position="418"/>
            <end position="518"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="535" mass="56356" checksum="7CD29DB246ECFE1B" modified="2016-01-20" version="1">MPFATTHCVALDGARGHLIDVQADVSTGQAGITVVGRAGAALREGLDRVRMAIANSDLSWPSSMRTTILLAPADLPKSGTHFDLAMAMTVLAATGQVPRTGLAGTAFIGELTLAGSLRPAVGVLPMALAAADRGVRRLVVPEPQAAEAAMVPGLDIIGARSLAQVVALVAGEVPPEAPPVVSASGTDLIVWRGAGRLDDLDFADLRGMLDEKYAAEVAAAGGHALLLSGPKGCGKTSLAERLPTILPDLTTEESLELTALHSLAGALDPGQGMIVRPPFAAPHHDASKASVIGGGQGRVQPGEISRAHAGVLFLDEFPLFRSDIIEALRQPLENGDITIARRDESVTLPARGMLVVASNPCPCGNWTAAARSNRCTCPETVRRRYQARMSGPIADRIDIVRHVRSASPAAQDPFRPVEGSSEVQARVAEARRRQLSRFEGRDWRLNSQIPSPRLKDTWPVHPDGKALIDAETFGGRLSARGAVRVQRLAWTVADLQSVRSGRDIDPGEAEVAVALRLRTGRPLDVATVRPAEGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMF3</accession>
    <name>A0A0Q8UMF3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cystathionine gamma-synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_20220</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the trans-sulfuration enzymes family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895963.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46190">
        <property type="protein sequence ID" value="KRC46190"/>
        <property type="gene ID" value="ASE19_20220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="637281at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019346">
        <property type="term" value="P:transsulfuration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000277">
        <property type="entry name" value="Cys/Met-Metab_PyrdxlP-dep_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11808">
        <property type="entry name" value="PTHR11808"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01053">
        <property type="entry name" value="Cys_Met_Meta_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001434">
        <property type="entry name" value="CGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00868">
        <property type="entry name" value="CYS_MET_METAB_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR001434-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="363" mass="38434" checksum="45C6848FFDE4AD0E" modified="2016-01-20" version="1">MPGPTLRPATLAVTAGRPPHEPDQPLNVPITMTSTYVATGDLEYGRFGNPTWTAFEEALGALEGGRALSFASGMAAVTTLLDLVGQGSSVIAPRHAYNGTVAALADAEARGRLRANLVDITDTAAVVRAMHDDEDCAFLWLESPTNPALEIADIPTLVAAAHELGIQVVVDNTFATPLLQQPLADGADIVLHSATKYIAGHSDVLMGALVLPGDSAHDEAYDALKARRGLAGSTPGPFEVWLALRGLRTLHVRLERASANAAELARRLAEHPAVEEVRYPGFGAIVAPVLAGGADAGDFLVRATSLWVHATSLGGVESTFERRRRWKLEAASIPEGLVRMSVGIEDVDDLWDDLVQALDRINA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMJ5</accession>
    <name>A0A0Q8UMJ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Disulfide bond formation protein DsbA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20375</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895985.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46214">
        <property type="protein sequence ID" value="KRC46214"/>
        <property type="gene ID" value="ASE19_20375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1678187at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012336">
        <property type="entry name" value="Thioredoxin-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13462">
        <property type="entry name" value="Thioredoxin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="domain" description="Thioredoxin-like_fold" evidence="2">
        <location>
            <begin position="71"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="247" mass="26385" checksum="159E09E86D49D742" modified="2016-01-20" version="1">MSDKSKANARAEKAAAERAAQAKREARRRWLTIGGVALAMALIIGGAITISLLQKNKNDDKLAAAASGRSDYGVTIGEESAPHKVVIYEDFLCPYCGELEKQTREDLAQLAADGKVFVEYRPFDLLSQLGDYPIRATSAFSVVLDASGPAVAKKFHDLLYENQPSESDPGSVTNDDLVERAVEAGAKESDVADAIRNVSNKDWVAKATSEAKAAGVNGTPTIILDGKVFTDGRTIDEQAENLIAALD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMR8</accession>
    <name>A0A0Q8UMR8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Mannose-1-phosphate guanylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20770</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896048.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46277">
        <property type="protein sequence ID" value="KRC46277"/>
        <property type="gene ID" value="ASE19_20770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="224217at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005976">
        <property type="term" value="P:polysaccharide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001538">
        <property type="entry name" value="Man6P_isomerase-2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01050">
        <property type="entry name" value="MannoseP_isomer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="1">
        <location>
            <begin position="11"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="MannoseP_isomer" evidence="2">
        <location>
            <begin position="318"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="359" mass="37806" checksum="23075DB4306164D0" modified="2016-01-20" version="1">MVADEIPGFWAVVPAGGAGTRLWPLSRSGSPKFLHDLTGSGRSLLEQTHDRLAPVVGDRLMVVTGAAHRDAVRRQLDQLPDDNVIAEPSARDSMAAIGLAAAVLERRGAEVMGSFAADHVIVDDARFHATVADAAAAARDGWLVTIGIEPTFASSAFGYVHQGDVLEGHPSVRRVVEFVEKPSVSVAEEYLATGRYRWNAGMFVVRPTVLLDLLAEQDAAFAANLRAIAAEPERLGELWEKLPRIAIDHAIAEPAAAAGKVATVPGAFGWDDIGDFDSLATLLGEQEALTVLGDPALAQVIGSSGIVVPGSGRTVAVIGLDDIVVVDTPDALLVTTRARAQEVKNVVAALKDQGRSELT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMV0</accession>
    <name>A0A0Q8UMV0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF676 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46331">
        <property type="protein sequence ID" value="KRC46331"/>
        <property type="gene ID" value="ASE19_21065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007751">
        <property type="entry name" value="DUF676_lipase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05057">
        <property type="entry name" value="DUF676"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF676" evidence="1">
        <location>
            <begin position="132"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="378" mass="40292" checksum="C5948F3B364E86A2" modified="2016-01-20" version="1">MLDDLVVATARETHDAISRRAHGLARVGAGPVAAPAEVVHRGIASVVYGALGLSLRGATAGLTRLAEAGVGPGLEDGPRGRFVSSAVNGLIGEELRRERPRLAIEMGVRHQGRDVVLTPEGVAAAFPEATGQLVVFLHGLCETEDYWRRHRDRLGSTYGETMARRGWTPVYLRANTGLPLRENGVILASLIQRLVDAWPAEVTRIALVGHSLGGLIIRASSAVVAEGDAPAAWTDLVSDVVTLGTPHLGSWFAVSADHASRTLARLPEVAAFGKVIDRQAPGIHDLIEGLAHDVPPLPHARYRLVSATLTRSPRHPVASAVGDLLVTPRSAVGRDRRGTELFPGAEVLHLGRTDHFGLLNHPDVHAALVRWLVETTAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMV8</accession>
    <name>A0A0Q8UMV8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA-(apurinic or apyrimidinic site) lyase</fullName>
            <ecNumber evidence="3">4.2.99.18</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">ASE19_21090</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <reference evidence="17 18" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FPG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.99.18" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896105.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46334">
        <property type="protein sequence ID" value="KRC46334"/>
        <property type="gene ID" value="ASE19_21090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1162346at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140078">
        <property type="term" value="F:class I DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019104">
        <property type="term" value="F:DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015886">
        <property type="entry name" value="DNA_glyclase/AP_lyase_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012319">
        <property type="entry name" value="FPG_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035937">
        <property type="entry name" value="MutM-like_N-ter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010979">
        <property type="entry name" value="Ribosomal_S13-like_H2TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000214">
        <property type="entry name" value="Znf_DNA_glyclase/AP_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010663">
        <property type="entry name" value="Znf_FPG/IleRS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01149">
        <property type="entry name" value="Fapy_DNA_glyco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06831">
        <property type="entry name" value="H2TH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06827">
        <property type="entry name" value="zf-FPG_IleRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00898">
        <property type="entry name" value="Fapy_DNA_glyco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01232">
        <property type="entry name" value="H2TH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46946">
        <property type="entry name" value="SSF46946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81624">
        <property type="entry name" value="SSF81624"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51068">
        <property type="entry name" value="FPG_CAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51066">
        <property type="entry name" value="ZF_FPG_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="10" id="KW-0234">DNA repair</keyword>
    <keyword evidence="9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="13" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="6 14" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="FPG_CAT" evidence="16">
        <location>
            <begin position="2"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="FPG-type" evidence="15">
        <location>
            <begin position="242"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012720"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS51066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KRC46334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="284" mass="31491" checksum="2410A5E3A6141DB9" modified="2016-01-20" version="1">MPEGHTLHRLARELTGLFGGHVVRAGSPQGRFADGAAQVDGTRLLDADAWGKQLFVRFEGERFVHVHLGLYGTFDLYDDVDAVPQPVGQVRLRLVRPAGASRPAAYADLRGATRCELVTAEERAAVVARLGPDPLREDADPDLAWQRISRSTAPIGTLLMDQTVLAGVGNVYRAEVLFRHGIHPLRPGRTLRVSQFRAIWDDLVVLMADGVRTGRIDTVRPEHLPEAMGRAPRVDDHGGEVYVYRRTGQPCHVCERPVRTEVLGARNSFWCARCQPVFRTRAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNR1</accession>
    <name>A0A0Q8UNR1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_22530</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896350.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46581">
        <property type="protein sequence ID" value="KRC46581"/>
        <property type="gene ID" value="ASE19_22530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="2">
        <location>
            <begin position="19"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="3">
        <location>
            <begin position="438"/>
            <end position="513"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="326"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="528" mass="56603" checksum="FBCEB9F8C22F902D" modified="2016-01-20" version="1">MTAATATPRPINLADVLEAMADAVPDRVAVFTMDRAWTFAEIDDRATRLANHLTGLGIQPGEHVAVHATNRIEWVDALYGCLKARAVPININFKYLRDELAYLYDNADCVATIIAPEYVDAVRALDVPTLREMVVLGEGYDAALAAASPERPVNGRSADDHYVLYTGGTTGNPKGVVWRNEDLLRAALNAARYGAPLESVEQLAEEAVAVETPMVLLACGPMMHGGSQWILGNGHVAGQTVALFTDANFSATGVLDLVERAKVVSLTFLGDAMGRPVAEAILAEPDRWDLSSLVAVSNGAAPLSDGVREEIRRALPGRFILDSYGSSESGAAGSRMDDGSEGGSAAPRFTVDDKVEVFDAEMKPCPPGVDGMLARTGPVPLGYYKDPVKTAATFKEVDGVRWVVPGDFARREEDGSVTVLGRGSVCINTGGEKVHPEEVEAVLLRHDEIFDAVVVGTPHERWGQQVTAMVQRREGSTLTEDDVRDHCRALISNYKVPKTVLFIDTVPRTPVSKVDYPASAALAAQLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNR5</accession>
    <name>A0A0Q8UNR5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_21590</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46636">
        <property type="protein sequence ID" value="KRC46636"/>
        <property type="gene ID" value="ASE19_21590"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004254">
        <property type="entry name" value="AdipoR/HlyIII-related"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20855">
        <property type="entry name" value="PTHR20855"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03006">
        <property type="entry name" value="HlyIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="45"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="82"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="105"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="130"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="163"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="200"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="224" mass="24235" checksum="0D125A26DE172F72" modified="2016-01-20" version="1">MSEKVADIKPKLRGWIHLISTPLVLAAGIVLICLSPTATTRIGSALYAGSALLLFGTSALYHRGTWSPKVWQVLNRFDHSNIFLFIAGSYTPFALILLEGPSRVIMLSVAWTGALLGIAFKLFWPTAPRWMSAPIYIALGWAAIFFIPAFFEGATALGLGIGIAIFVLIAVGGALYTVGGLVYGFQWPNPSPRVFGFHEIFHGFTIAAFVAHYVGVSLATYSLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNS0</accession>
    <name>A0A0Q8UNS0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Cell shape-determining protein MreB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mreB</name>
        <name evidence="3" type="ORF">ASE19_21280</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Forms membrane-associated dynamic filaments that are essential for cell shape determination. Acts by regulating cell wall synthesis and cell elongation, and thus cell shape. A feedback loop between cell geometry and MreB localization may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Forms polymers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="2">Membrane-associated.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the FtsA/MreB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896401.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46632">
        <property type="protein sequence ID" value="KRC46632"/>
        <property type="gene ID" value="ASE19_21280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="410781at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000902">
        <property type="term" value="P:cell morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd10225">
        <property type="entry name" value="MreB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02207">
        <property type="entry name" value="MreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004753">
        <property type="entry name" value="MreB"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01652">
        <property type="entry name" value="SHAPEPROTEIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00904">
        <property type="entry name" value="mreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0133">Cell shape</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="7"/>
            <end position="9"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="151"/>
            <end position="153"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="199"/>
            <end position="202"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="279"/>
            <end position="282"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="333" mass="35746" checksum="99B14A4CDB6F1A42" modified="2016-01-20" version="1">MAVDLGTANTLVYVRRRGVLLDEPSVVALNDATGEVIAVGHQAKQMLGRTPDNITALRPLRDGVIADFEATEQMLRHFIARVHRRRYFAKPRMVICVPSSITPVEQRAVKEAGYQAGARRVYVVEEPMAAAIGAGLPVHEATGNMIVDVGGGTTEVAVISLGGIVTSLSIRTAGDDLDGAIIAWMKKEHGVMLGERTAEDVKITLGSAFPRPGEPEGEVRGRDMVTGLPRTVTVTSADIRHALEEPLHAIVDAVRVTLDQTPPELAGDIMDRGIVLTGGGALLRGLDERIRHETGMPVHVAEDPLVSVAMGAGRCVEEFEALQQVLVTNPRRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8URC7</accession>
    <name>A0A0Q8URC7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_20790</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896052.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46281">
        <property type="protein sequence ID" value="KRC46281"/>
        <property type="gene ID" value="ASE19_20790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1543624at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC_2_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="48"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="84"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="124"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="157"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="192"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="267"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="domain" description="ABC2_membrane" evidence="6">
        <location>
            <begin position="31"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="300" mass="33853" checksum="A7D88CE797507B2D" modified="2016-01-20" version="1">MTDVAVPVAEKPLRSPAPASGLLSVLRQRYLLRLLVQREISARYQGSFLGLLWSYINPLTQFFIYWFVIGFLFQMHKDVPHYPIHLFAALIIVHFFTETFVAGTRSIMRNKALVVKMAMPREMFPVATMLVSLYHVGPQMVILVVVCVLSGWTPDPVGMLCLALALLIIAAIGLSGALLFSAANVFFRDFGNIVNVLTNFVRFGVPMMYPYVIVHDRFGRFADLYLLNPLADAVVLFQRAFWVGTVPDADRVRIEQHYGGPMMPDHLITHGVLALLGCLVILAFSQWVFTRLENKIPERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU40</accession>
    <name>A0A0Q8UU40_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17275</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48694">
        <property type="protein sequence ID" value="KRC48694"/>
        <property type="gene ID" value="ASE19_17275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1308416at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="357" mass="38780" checksum="63CDFE6426F1431E" modified="2016-01-20" version="1">MAEQRGRRDDGGRSGAPRQGQGGPRKGSTSRGDGGKPRSASTGSGRDRKPFERKDGDRKPFDRSKDGERKPFDRSKDGERKSYDRKDGDRRPASERGGRGRGKPEGAGSRRTGGPAPERRERTVEQSVYDGPPLPDEITGTELDNSIRAQLRSLPEKLSLRVARHLAAAGQLVDEDPETAYQHTLAAKARASRIAVVREAAGEAAYAAGHYAEALAELRAAKRMNGATAYLPIMADCHRALGNPTRALELAKSPSVANFSFAAKAEMTIVEAGARRDLGQMDAALRTLEVAHINSKSREAWVVRLRYAYADTLEAAGRLNDALAWFHKTNAIDAEELTDAAERAEALEKVIDRSKDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUB4</accession>
    <name>A0A0Q8UUB4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">UDP-N-acetylmuramate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17605</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893150.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48747">
        <property type="protein sequence ID" value="KRC48747"/>
        <property type="gene ID" value="ASE19_17605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="517836at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025841">
        <property type="entry name" value="CP_ATPgrasp_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016450">
        <property type="entry name" value="UCP005522"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14403">
        <property type="entry name" value="CP_ATPgrasp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005522">
        <property type="entry name" value="UCP005522"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="469"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="475"/>
            <end position="494"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="494" mass="54340" checksum="15BE2EF6212CE23D" modified="2016-01-20" version="1">MSTMFEGYGTSGPAYDEMFDGDELRPPYLRMRDSLDKMSTPELISRVEALQASYLDQGITFDIGGEERAMPLDILPRVIEMDTWTTIERGLQQRVKALELLLADVYDAGNVFNDGVLPRQVITTSSHFHRQAATIRPANGVRVHVSGIDLIRDNNGEFRVLEDNVRVPSGVSYVMTSRRAISAALPETIAQHRIRPVASYPQRLLAALRAAAPAGVADPTVVVLTPGVYNGAYFEHTLLARTMGVELVEGRDLVCRRGEVMMRTTKGLAPVHVIYRRVDDEFLDPVHFRADSMLGCPGLIDAARAGNVTLANAVGNGVADDKLVYTYMPDVIRYYLNEEPVIRNVDTWRCGEPDHLAEVMDRLDELVLKPVDGSGGKGIVIGPRASRAELDELRGKVLDDPRSWIAQPVVQLSTVPTFVDGELGPRHVDLRPFAVNDGSRVWVLPGGLTRVALGKGELIVNSSRGGGTKDTWVLAGPTSPEQQQQQQQQSREVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUF3</accession>
    <name>A0A0Q8UUF3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">UBP-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17900</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893197.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48795">
        <property type="protein sequence ID" value="KRC48795"/>
        <property type="gene ID" value="ASE19_17900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1674309at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001607">
        <property type="entry name" value="Znf_UBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02148">
        <property type="entry name" value="zf-UBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50271">
        <property type="entry name" value="ZF_UBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UBP-type" evidence="2">
        <location>
            <begin position="19"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="88"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="118" mass="13038" checksum="B9737D45BD6806CB" modified="2016-01-20" version="1">MSDDQIDVQIDVEATPSGTGCAECTAAGGWWVHLRRCAACGHVGCCDSSPEQHATAHFRETGHRLIRSFEPGEDWFWDFEAQDYYAGPELAPPLAHPEDQPTPGPRGAVPLNWRELIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUM4</accession>
    <name>A0A0Q8UUM4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PKD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18530</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48908">
        <property type="protein sequence ID" value="KRC48908"/>
        <property type="gene ID" value="ASE19_18530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1120891at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000601">
        <property type="entry name" value="PKD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035986">
        <property type="entry name" value="PKD_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00801">
        <property type="entry name" value="PKD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49299">
        <property type="entry name" value="SSF49299"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50093">
        <property type="entry name" value="PKD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKD" evidence="1">
        <location>
            <begin position="85"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="170" mass="18637" checksum="C458578163C3483D" modified="2016-01-20" version="1">MEMIEGDNPVSVYFCAEADPETPVVTIGLIRRAFAELQLPASTLVIQPPDGLTLVNFDTNFYTTSTRPISRTVTLLGQRVTLEATPSTFHWTFGDGERLSTSKPGAPYPDLTVTHNYLRKGTYRPSLATTYTGRYRVGGGPWRTIPGTVTIDGTGQPLRAIEAQPKLVSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUT2</accession>
    <name>A0A0Q8UUT2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18695</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893338.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48936">
        <property type="protein sequence ID" value="KRC48936"/>
        <property type="gene ID" value="ASE19_18695"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359458" evidence="2">
        <location>
            <begin position="41"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="92" mass="8600" checksum="B1BD65356C764998" modified="2016-01-20" version="1">MTSPSVARSTTRRVGRAKATVVALALGGSLALTGAIAAQAADQDVVNGVGTTSTGTSTSSTTGTSGSSSAADTDSGVSPPSSGSSHATTQGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWU7</accession>
    <name>A0A0Q8UWU7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two-component system response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_21360</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46381">
        <property type="protein sequence ID" value="KRC46381"/>
        <property type="gene ID" value="ASE19_21360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="21"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="164"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="234" mass="24943" checksum="2829B78D4579949A" modified="2016-01-20" version="1">MASGTSPAAAGPGHPVSEPVRVVVVDDQELFRRGLTMLLGLEQGIEVVGEASSGAEGVTLVVGTVPDVVLLDVRMPKQSGIEACVAIKEAVPTTKIIMLTMSDDEADLYEAVKSGASGYLLKDSSIEEVAQGIRVVADGQSLISPSMAAKLIDEFKTMSKPERTAGPALKLTERELEVLRLVARGLSNRDVAGQLAISENTVKNHVRNILEKLQLHSRMEAVMYAVRAKLVDLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UX14</accession>
    <name>A0A0Q8UX14_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">4HBT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896199.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46429">
        <property type="protein sequence ID" value="KRC46429"/>
        <property type="gene ID" value="ASE19_21620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1814691at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016790">
        <property type="term" value="F:thiolester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011973">
        <property type="entry name" value="PaaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02286">
        <property type="entry name" value="PaaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="55"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="147" mass="15672" checksum="0BFE100FBA2454DD" modified="2016-01-20" version="1">MVRAAAEAERLAQACAERMWADDHASQVLGMKLDAVAPGTARVSMTVCREMVNGHGTCHGGFISTLADSAFAFACNSHGTVTVASGFDITFLEPAELGDVLVAEAREVALRGRSGIYDVTVRCGDTRIAEFRGRSRSLGRPILEEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UX31</accession>
    <name>A0A0Q8UX31_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 3">Nucleoside diphosphate kinase</fullName>
            <shortName evidence="1">NDK</shortName>
            <shortName evidence="1">NDP kinase</shortName>
            <ecNumber evidence="1 3">2.7.4.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Nucleoside-2-P kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ndk</name>
        <name evidence="5" type="ORF">ASE19_21295</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>a 2'-deoxyribonucleoside 5'-diphosphate + ATP = a 2'-deoxyribonucleoside 5'-triphosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:44640"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:73316"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a ribonucleoside 5'-diphosphate + ATP = a ribonucleoside 5'-triphosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:18113"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the NDK family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.6" evidence="1 3"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896140.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46369">
        <property type="protein sequence ID" value="KRC46369"/>
        <property type="gene ID" value="ASE19_21295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1752581at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004550">
        <property type="term" value="F:nucleoside diphosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006241">
        <property type="term" value="P:CTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006183">
        <property type="term" value="P:GTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006165">
        <property type="term" value="P:nucleoside diphosphate phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006228">
        <property type="term" value="P:UTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.141">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00451">
        <property type="entry name" value="NDP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034907">
        <property type="entry name" value="NDK-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036850">
        <property type="entry name" value="NDK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001564">
        <property type="entry name" value="Nucleoside_diP_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023005">
        <property type="entry name" value="Nucleoside_diP_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00334">
        <property type="entry name" value="NDK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01243">
        <property type="entry name" value="NUCDPKINASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00562">
        <property type="entry name" value="NDK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54919">
        <property type="entry name" value="SSF54919"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00469">
        <property type="entry name" value="NDP_KINASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 3 5" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NDK" evidence="4">
        <location>
            <begin position="2"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="active site" description="Pros-phosphohistidine intermediate" evidence="1">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="10"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00451"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="136" mass="14721" checksum="91F5971EC4A1383F" modified="2016-01-20" version="1">MTQRTLVLLKPDTVRRGLVGNVLARFEAKGLSIVAMEHRHIDAAQADAHYAEHVERDFYPPLRTFVTSGPLVALVLEGDEAIEVVRALNGATDGRKAAPGTIRGDLSLSNRENLVHGSDSPESAAREIALWFPGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXQ8</accession>
    <name>A0A0Q8UXQ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LLM class F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15680</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893529.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50060">
        <property type="protein sequence ID" value="KRC50060"/>
        <property type="gene ID" value="ASE19_15680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019951">
        <property type="entry name" value="F420_OxRdatse_Rv3520c_pred"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03559">
        <property type="entry name" value="F420_Rv3520c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="14"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="347" mass="37459" checksum="1461456869ECF112" modified="2016-01-20" version="1">MKLGLQLGYWGAQPPQGVGELVAAAEDAGFDAIFTAEAWGSDAFTPLAWWGRETSRVRLGTSIVQMSGRTPTSIAMHALTLDHLTGGRVVLGMGVSGPQVVEGWYGVPFSKPLARTREVVSIIRQVLAREAPVTNPGPHHPLPYDGPGAVGLGKPLKPIVHPLRADIPIWLGAEGPKNVAQTAEIADGWIPIFYTPRSAGMYQPWLDEGFARPGARRTRKDFEIAATCHLQVVPDAAAKQAVIDGMKPIVALYMGGMGAKDENFHKNVFERMGYAAITDQVQELFLAGKRDEATALIPDDLVDDMHIIGTAAEVKDRVARWEETGVTTLLLSCRSADEVRQVAELLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY20</accession>
    <name>A0A0Q8UY20_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16290</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893633.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50165">
        <property type="protein sequence ID" value="KRC50165"/>
        <property type="gene ID" value="ASE19_16290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2140866at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="106" mass="11158" checksum="B347E7A822B8E784" modified="2016-01-20" version="1">MRLPGAARRKLAATEALARSGTLVPARGIGWTRVAHEAGSTEGELQLRVTLPSGDDITLTHVCDWSDCEEAGQGTADQSVTVIVDPDTGAWAVVHAGHVRSWSADL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY65</accession>
    <name>A0A0Q8UY65_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Urease accessory protein UreD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">ureD</name>
        <name evidence="4" type="ORF">ASE19_16505</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">UreD, UreF and UreG form a complex that acts as a GTP-hydrolysis-dependent molecular chaperone, activating the urease apoprotein by helping to assemble the nickel containing metallocenter of UreC. The UreE protein probably delivers the nickel.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the UreD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893672.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50203">
        <property type="protein sequence ID" value="KRC50203"/>
        <property type="gene ID" value="ASE19_16505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1764668at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01384">
        <property type="entry name" value="UreD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002669">
        <property type="entry name" value="UreD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01774">
        <property type="entry name" value="UreD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0996">Nickel insertion</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="250" mass="26473" checksum="2A7B5DBB3EE9F62A" modified="2016-01-20" version="1">MLTATERLGRTRIRVSSGAGGARCQVRTAVSRSDATASALRPMVIGHDAGRARVALVPEGALLLAGDAIEVDVTVDDGLELDLVEPGGTVAYDMRGESARWDVRIALGQDARLTWAGQPFVVAEGADVVRSLRVRSGAGARLALRETLVLGRYGEQPGSVRQTSTVLDPAGQPVLVEDLPLDADSAPLLLGGHRVLTSVLALLPEPGETADDADRYDLDAPDAVLWRRLGHQVHDAELTAAWRQVCVPGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYC4</accession>
    <name>A0A0Q8UYC4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_16850</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893733.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50264">
        <property type="protein sequence ID" value="KRC50264"/>
        <property type="gene ID" value="ASE19_16850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="8"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="123"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="233"/>
            <end position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC50264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="383" mass="42020" checksum="E6B141D94BF63C96" modified="2016-01-20" version="1">MRRTVFDEDHESFRKTIRSFIEAEVVPHYQEWFEQGIVPRDFYLKLGELGTFGIEVPEEYGGAGIESFKFAAVQYEELSRAGVSFGGSSTHVALCLPYILKLATEEQKQRWLPGFVTGETMFAIAMTEPGTGSDLAGMTTTAKRDGDSYVLNGAKTFITGGVHADRVIVCARTSPPLENNRRHGISLFVVDTTSEGYSVGRKLDKIGLRTSDTAELAFVDVRVPASDLLGEEGDGFSYLGQNLPQERLGIAFGAYAQAAAAVRFTQQYVEERKVFGQPVAHFQNTKFELAACQAEVDAAQAVADRALEAHDQGELTAVEAASAKLFCTEVASRVIDRCLQLHGGYGYMNEYPIARLYADNRVNRIYGGTSEVMKLIIAKSMGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYE0</accession>
    <name>A0A0Q8UYE0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 9">Enoyl-[acyl-carrier-protein] reductase [NADH]</fullName>
            <ecNumber evidence="9">1.3.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_16925</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a 2,3-saturated acyl-CoA + NAD(+) = a (2E)-enoyl-CoA + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:18177"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58856"/>
            <dbReference type="ChEBI" id="CHEBI:65111"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="2">
            <dbReference type="Rhea" id="RHEA:18179"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2,3-saturated acyl-[ACP] + NAD(+) = a (2E)-enoyl-[ACP] + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:10240"/>
            <dbReference type="Rhea" id="RHEA-COMP:9925"/>
            <dbReference type="Rhea" id="RHEA-COMP:9926"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:78784"/>
            <dbReference type="ChEBI" id="CHEBI:78785"/>
            <dbReference type="EC" id="1.3.1.9"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="1">
            <dbReference type="Rhea" id="RHEA:10242"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism; mycolic acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 9">Belongs to the short-chain dehydrogenases/reductases (SDR) family. FabI subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.9" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917989.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50278">
        <property type="protein sequence ID" value="KRC50278"/>
        <property type="gene ID" value="ASE19_16925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="762291at2"/>
    <dbReference type="UniPathway" id="UPA00915"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004318">
        <property type="term" value="F:enoyl-[acyl-carrier-protein] reductase (NADH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016631">
        <property type="term" value="F:enoyl-[acyl-carrier-protein] reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050343">
        <property type="term" value="F:trans-2-enoyl-CoA reductase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014358">
        <property type="entry name" value="Enoyl-ACP_Rdtase_NADH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43159">
        <property type="entry name" value="PTHR43159"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000094">
        <property type="entry name" value="Enoyl-ACP_rdct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="8 9" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="9" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="8 9" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7 9 10" id="KW-0520">NAD</keyword>
    <keyword evidence="6 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="10">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="21"/>
            <end position="22"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="66"/>
            <end position="67"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR000094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000094-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC50278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="27326" checksum="E0D26A86FAA3B6A1" modified="2016-01-20" version="1">MGNGILAGKNILVAGVTLDTSIGFAVAKFAQEQGATVVVSNFGQALRITRRIVKRLPELPPVVELDVTDPEHLAALPDALREALGEDAVLHGVVHSIAYGNPETLLGGKFLEGPWKDVAQAVEVSAYSLKSLAVACRPLMAPGSSVVGLTFDASIAWPVYDWMGVAKAALESTSRYLARDLGADGIRVNLVSAGPLRTLAAKAIPGFGDLESMWTTKSPLGWDNTDQEPTAKAVCALLSDLFPATTGEIVHVDGGFHAMGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYY2</accession>
    <name>A0A0Q8UYY2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH merR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21300</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896141.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46370">
        <property type="protein sequence ID" value="KRC46370"/>
        <property type="gene ID" value="ASE19_21300"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="2">
        <location>
            <begin position="21"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="246"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="255"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="277" mass="30592" checksum="32A850B799FB35F4" modified="2016-01-20" version="1">MSAVAGVEPTRESDGESALRTVDELAAAAGLTVRTTRYYASLGLLPPPARRGRMAWYDDTHLARLEMIRALQEHGFTLQAIEKYLASLPADAGVEDLAVQRAMLTSWTVGEPQELTRRQLDQHAGRKLTDEEVALIEDFGLLRRVGEDHFTPVHGFDVAVELLQVDIPVAGMRAAGEAIERHMSALAAELTRVLHDEVVEPWRHERSHSREDAEQLEATIGTLRRLTLEAIVRGFQRSANKLITQSLEGAAAEGRGRGSRPKVEERRQARAAKQAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZB6</accession>
    <name>A0A0Q8UZB6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 14">Crossover junction endodeoxyribonuclease RuvC</fullName>
            <ecNumber evidence="11 14">3.1.21.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13 14">Holliday junction nuclease RuvC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12 14">Holliday junction resolvase RuvC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">ruvC</name>
        <name evidence="15" type="ORF">ASE19_19090</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 14">Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 14">
            <text>Endonucleolytic cleavage at a junction such as a reciprocal single-stranded crossover between two homologous DNA duplexes (Holliday junction).</text>
            <dbReference type="EC" id="3.1.21.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="14">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 14">Belongs to the RuvC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.10" evidence="11 14"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893403.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49001">
        <property type="protein sequence ID" value="KRC49001"/>
        <property type="gene ID" value="ASE19_19090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1815080at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008821">
        <property type="term" value="F:crossover junction endodeoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16962">
        <property type="entry name" value="RuvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00034">
        <property type="entry name" value="RuvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020563">
        <property type="entry name" value="X-over_junc_endoDNase_Mg_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002176">
        <property type="entry name" value="X-over_junc_endoDNase_RuvC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30194">
        <property type="entry name" value="PTHR30194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02075">
        <property type="entry name" value="RuvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00696">
        <property type="entry name" value="RSOLVASERUVC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00228">
        <property type="entry name" value="ruvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01321">
        <property type="entry name" value="RUVC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 14" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 14" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="8 14" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 14" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 14" id="KW-0460">Magnesium</keyword>
    <keyword evidence="14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 14" id="KW-0540">Nuclease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="14">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="144"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00029354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00030265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00030973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC49001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="181" mass="18780" checksum="74B0A7954F0C458B" modified="2016-01-20" version="1">MRVLGIDPGLTRCGLGVVDGSIGRPLTLVDVGVVRTSAHLGVPERLVTIEQGIDARLDEYQPDAVAIERIFARSDVSTIMGTAQAAGIAMVCAARRGLPVALHTPSEVKAAVSGNGRADKAQVGAMVTRILRLDAMPKPADAADALALAITHIWRGGTQARIDAALAAARPPRSRIPGGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZH9</accession>
    <name>A0A0Q8UZH9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">ATP-grasp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22515</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896347.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46578">
        <property type="protein sequence ID" value="KRC46578"/>
        <property type="gene ID" value="ASE19_22515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="878336at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="2">
        <location>
            <begin position="94"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="285" mass="30581" checksum="79B9761BFB291881" modified="2016-01-20" version="1">MPTLLLATFDLMPDGEPGGAALVAAFAERGVDARWERWDDPAVDWSDADLVAVRSTWDYHRRLPAFLDWARRVEASTPLLNGAEVFAWNADKVYLAELADVVPAVPTATLDDTDLAGGLTAGLERWGSVVIKPRTGAGGTGLVVAESFADPRLEGLVPGPWIIQPVVESVRTVGESSVYVFGGVAVAQVDKAPAAGEVRVHELYGGHSRPVPLDPARAEVAAEAVRAVERRTGADLAYARIDLMSWEGAWVVSELELIEPGLYLDVDPANAVRFADAVLPRLNPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0C5</accession>
    <name>A0A0Q8V0C5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">HTH asnC-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_21955</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896257.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46487">
        <property type="protein sequence ID" value="KRC46487"/>
        <property type="gene ID" value="ASE19_21955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1844486at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019885">
        <property type="entry name" value="Tscrpt_reg_HTH_AsnC-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00519">
        <property type="entry name" value="HTH_ASNC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="7"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="16369" checksum="4B19FD707BD74173" modified="2016-01-20" version="1">MSEPAVLDPTDRAILELLRENARRPLREIADAVGLTVAPVQRRIARLEKLGVIERYTVRINHGRIAAGIEAITELNFANDLDLAQVLDFVAGVPEVEEVLTLAGDPDALVRIRVNGVEDLRRVVSQLRAGGEISSTKTLVVLEQWTRSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1N2</accession>
    <name>A0A0Q8V1N2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptide ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_14815</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51366">
        <property type="protein sequence ID" value="KRC51366"/>
        <property type="gene ID" value="ASE19_14815"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045621">
        <property type="entry name" value="BPD_transp_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19300">
        <property type="entry name" value="BPD_transp_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="105"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="138"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="241"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="285"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="99"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC51366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="320" mass="34290" checksum="758B916E851DA51A" modified="2016-01-20" version="1">MPSVARRFLLPLLELVAVLFLVSIGVFLLLSLVPGDPAIAVLGEGRTPQEYDALRAQLGLDDPLLTRYGDWLGGVLHGDLGTSLVPPQTDVLDRIARAFPVSLELAVVGLVMALVIALPLAMWSAYHQGGRADRAISAITFGLLSMPSFLIGIVLIAVLVNTLGWFPRNEWVRPGESLTGNLSHAFLPALTIALMEAAMFTRILRNDLVTTLHEDFILAARARGMSPLRIMVSDALRPSSFSLVTVLGLSIGRLVGSTVIVEYLFALPGMGKLVIDAANQGNYPVVQGAVLVIAGVYVGSNALIDRTYGLLDPRTRRAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1P8</accession>
    <name>A0A0Q8V1P8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14910</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896449.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51382">
        <property type="protein sequence ID" value="KRC51382"/>
        <property type="gene ID" value="ASE19_14910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1812124at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019660">
        <property type="entry name" value="Put_sensory_transdc_reg_YbjN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10722">
        <property type="entry name" value="YbjN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="165" mass="18951" checksum="D8CD9A383B68D254" modified="2016-01-20" version="1">MSHPTDPIEAVRDHLTANDIEFEETAEGTFSFSLPGERKLQTPVRLDVGPHALGVHAFVCRRPDEEFERVYRWLLERNMKMYGVSFGIDRHGDIYLDARLPMSSVTPDDLDRLLGSVLTYADESFNTILELGFETSIRKEWAWRIDRGESTANLEAFRGWLESSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1U7</accession>
    <name>A0A0Q8V1U7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RNA polymerase subunit sigma-24</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_15205</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896497.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51430">
        <property type="protein sequence ID" value="KRC51430"/>
        <property type="gene ID" value="ASE19_15205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014325">
        <property type="entry name" value="RNA_pol_sigma-E_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02983">
        <property type="entry name" value="SigE-fam_strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="16"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="102"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC51430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="168" mass="18937" checksum="023F9E969B70F27A" modified="2016-01-20" version="1">MGTRRRDAEFTEFVASRRVRLHRTAYLLCGDPHRAEDIVQQALAKLYVSWPRVRRADSVDAYARRSVLNAFLDDGARGWRREVVAEIQDRAQADPLTHEDSDALWQALRELPPGQRRVVVLRHYWGLSVEETAADLGVSPGTVKSQTSAALARLRDVLVPADATGDHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1X6</accession>
    <name>A0A0Q8V1X6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Oxygen sensor histidine kinase NreB</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Nitrogen regulation protein B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_15315</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Member of the two-component regulatory system NreB/NreC involved in the control of dissimilatory nitrate/nitrite reduction in response to oxygen. NreB functions as a direct oxygen sensor histidine kinase which is autophosphorylated, in the absence of oxygen, probably at the conserved histidine residue, and transfers its phosphate group probably to a conserved aspartate residue of NreC. NreB/NreC activates the expression of the nitrate (narGHJI) and nitrite (nir) reductase operons, as well as the putative nitrate transporter gene narT.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51450">
        <property type="protein sequence ID" value="KRC51450"/>
        <property type="gene ID" value="ASE19_15315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0732">Signal</keyword>
    <keyword evidence="11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="12">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359637" description="Oxygen sensor histidine kinase NreB" evidence="12">
        <location>
            <begin position="25"/>
            <end position="669"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="62"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="98"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="133"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="187"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="220"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="246"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="280"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="309"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="13">
        <location>
            <begin position="481"/>
            <end position="667"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00030800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC51450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="669" mass="71012" checksum="A91DADF6D323152C" modified="2016-01-20" version="1">MLLVPVLCVLLLPAAAWLDLVAPADGPGADVVGGPGWPWIVNGAVLGTLAAIVLLRDRHQRFGWVLAFSGLFWSLDGFSQSYVNAGLTEDGAWPGMTFALWFLNRFGSYLTSVTAVLVLVFPTGRFLPGRWRPASWVAVLALFLSGLAVIVAPAEGDQRIDGIPAGIDQDPTSIGALAGRGQQVASFGVALGVAAFLFALLTVVVRYRRSEGVERDRMRWLLWSVFVIVAVLLLSLMFPLPGSGYAGAFSATVLPPTAMTIAIVRPSLAPIQDLLARTAVLAAVLAVLVVADAMVLGALTLVLDDELSQAQVVAVVLAVAVLLYGPLRQRLSAAVRRLMLGERTNRYDVVAGLASTLETTDDSAEQLAAVAQAVAGAFGIAFVSVEVERGHGERLVTTYGERPDQVRTLPITYRDATIGSLVLPARGLRSRLSDRDQELLGDLVRQAATAARASQLAEEVQRSRERLVTAREEERRRIRRDLHDGFGPALSGIVFQLEAARMTVDRDPGRAREQLEAVSTQVQDVVADVRRLVHDLRPPALDDRGLVGALRQQADTLALPVTVDAPDELAGRLPAAVEVAAYRIAGEALTNVARHAAASGVRLRIDLAADTLLVEVADDGVGIAPDRTAGVGLSSLRERAAELGGTTTITSPPAGGTVVTARLPLRTPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V434</accession>
    <name>A0A0Q8V434_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADPH:quinone oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18370</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893282.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48881">
        <property type="protein sequence ID" value="KRC48881"/>
        <property type="gene ID" value="ASE19_18370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1752728at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002364">
        <property type="entry name" value="Quin_OxRdtase/zeta-crystal_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01162">
        <property type="entry name" value="QOR_ZETA_CRYSTAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="10"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="330" mass="35026" checksum="B41756EC7AE86469" modified="2016-01-20" version="1">MKAFVVTHYGPDGLQAADVPAPSVGPRDVLVDIRAASINPLDKMVRNGEFKQLLKYKPPFVLGHDLAGVVTEVGSEVRGFAVGDEVYSRPRDLRIGAFAESIAIDAADVAHKPATLSFEEAAAVPLVALAAWQALVDLAEVRPGQKVLVHAGAGGLGSTVIQVAKHLGAHVATTAHTRDAEKVRALGADEVIDFTTTGFVDVLSGYDVVLDSLGPDSLQKSLRVLRPGGLAISVVGPPDPSFAARLGQPLLKPVMALMSRKVRRAARRLGVRYSFFFMKASGAQLATLAGLYDDGTLRPVLDRTFPFDRTLDAMAYVEQGKASGKIVVTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5U6</accession>
    <name>A0A0Q8V5U6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09630</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894621.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52683">
        <property type="protein sequence ID" value="KRC52683"/>
        <property type="gene ID" value="ASE19_09630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2052283at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="93" mass="10023" checksum="24BDFCE6A17EC7BE" modified="2016-01-20" version="1">MSIELTSAALLALVAFFCAAWVARSHDVVEVLPLAANVPSTDEWRSAALRHFHEHKDLQRSVAEALSTPGAVTGEARRELMVALGAPRVDVFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V657</accession>
    <name>A0A0Q8V657_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10805</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894824.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52892">
        <property type="protein sequence ID" value="KRC52892"/>
        <property type="gene ID" value="ASE19_10805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2063795at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="76" mass="8291" checksum="8932587638618938" modified="2016-01-20" version="1">MAKKRWSALDPRARKAILVAGAVDGVLRAAALIDLQRRPDDEVRGSKRRWGAALALVNSAGVLPAAYFLRGRRPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6E9</accession>
    <name>A0A0Q8V6E9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11180</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894891.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52958">
        <property type="protein sequence ID" value="KRC52958"/>
        <property type="gene ID" value="ASE19_11180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1121563at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011195">
        <property type="entry name" value="UCP010256"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008912">
        <property type="entry name" value="Uncharacterised_CoxE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05762">
        <property type="entry name" value="VWA_CoxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF010256">
        <property type="entry name" value="CoxE_vWa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="470" mass="51862" checksum="3AD74F9507C16F81" modified="2016-01-20" version="1">MNADRSGLLDRHLAFVEALRGAGLSVSLAEDLDAVAALSALKWSDRATVRDAFAATMVKKQAQRTTFDALFDVYFPAMVGDGAAAQAADGLPAQGEGGAVKDNAAALGDFRERLAEMLQAGEIDEAELRRMAAEMVGTFGAMPGRGPGLSSWSAYTALQRVAPQELVDKLVQGLMTDDVGEEEARRRAHRRIGEFTGMVEDDARRRIAEEKGPDHVAEVAIRPSIDKLAFMAARRSDLDEMRKEIFPLARRLATRLAKEQHSRHARTAPLDFRRTVRASIATGGVPITTHHRPKRPHRSDLVVLCDVSGSVANFAQFTLLFVFALREVFQSMRAFTFIDHVHEVTGHFRPGADPVDVLADLAASASHAALWGRTNYGRAFTKFDENFFDALTPKTTLLILGDARSNYSDLHEDTLRRLTGAVKRSFWLNPEHERNWGTGDSAAPTYGEIVPMIECRNLVQLQEFVHDLAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6G8</accession>
    <name>A0A0Q8V6G8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">SSD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_11510</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894943.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53013">
        <property type="protein sequence ID" value="KRC53013"/>
        <property type="gene ID" value="ASE19_11510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="149255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="184"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="233"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="274"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="308"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="367"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="514"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="541"/>
            <end position="560"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="580"/>
            <end position="600"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="627"/>
            <end position="649"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="655"/>
            <end position="672"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="7">
        <location>
            <begin position="205"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="718" mass="76289" checksum="281755EE6D34A582" modified="2016-01-20" version="1">MIERWGALVVRRAVVVLLVGLGLTAAAAIAGIGLEDKLDAGGFDDPSSQSARELADERATFGNRSVDAIVIFSSKDAKVTDPGFRAEVERAMADVPDGTIQSAQTWYDVQDPSMLSKDGHATAVYVSFEGETQDDFADAFERMEPVVEESSLDVDLAGPYAVYVDVNEETKADLLRAELVSMPIVLLLSLVIFRSVVAALMPLLVGLVAVVGARATIAGLNELVNVSIFAPNIITLLGLGLAIDYALFVVSRFREEIARTPDDTRQALVRTMATAGRTVAFSALTVAAAMSSLLVFPQTFLKSIGYGGIAAVLIAMVAALTVLPATLALLGKRIDSLRIPFLQRAGGVESDHGAWARLARAVMRRPVMVALGVVALLLVVASPFLGVKWGSVDYRVLPDDTPSHQASERLNTEFGGERSTANVLVKGADETALASYTRSLEGVDGVVDVRPVASEGDTTLLRAAWEGNSQSSASQQVVRDLRAVDAPDGAEALVGGLTADTVDLAESVGDHLPLMGLIVVGVMLVLLFLAFGSVVLPLKAVLMNAFSITASFGVVTWIFSDGHLADLLGFTPQGFLDLTNPIVMLAVLFGLSMDYEVFLLSRVREQWDATGDNDLAVQTGVQKTGRIITSAALLLGVVIGAFSLSGVVFMKMLGLGMLVAILVDATVVRALLVPATMKLLGRWNWWAPAPLARWWERYGFREGADEDPAPVDRVPAGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6I3</accession>
    <name>A0A0Q8V6I3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11595</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917961.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53029">
        <property type="protein sequence ID" value="KRC53029"/>
        <property type="gene ID" value="ASE19_11595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1639867at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022385">
        <property type="entry name" value="Rhs_assc_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006530">
        <property type="entry name" value="YD"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03696">
        <property type="entry name" value="Rhs_assc_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01643">
        <property type="entry name" value="YD_repeat_2x"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="571"/>
            <end position="593"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1335"/>
            <end position="1354"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1367"/>
            <end position="1394"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1643"/>
            <end position="1684"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1648"/>
            <end position="1680"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1868" mass="198787" checksum="14E246E5A9483A2D" modified="2016-01-20" version="1">MESQVDTDAHAITATLADSQARQTTVVALAATAASTSGTGDFSATPLAQSATWSAGGSSGNFAWNYPIRAIPANNGPAPTLALNYSSQTVDGRTAASNNQASQLGEGWDAGNSYIERGYVTCKDDGVAGKYDLCWKSDNAQIVLNGQSAELIKRSDGTWRLSNDDGSRVRRLTSTAVGNQDNDKEYWELTSSDGTKYYFGRTAIPDQTGDPQSVWWVPVNGNNSGEPCYSSGTTYATRFCKQAWRWNLDYIVDPHGNAMSYWYTAEANYYAKNQVASPGTQYIRGGRLTRIDYGLRAGSTAAAPFQVAFTGSLRCLATTGCDTYSKAKWPDTPYDQICVGTAACTGKFAPTFFTRYRLSKITTKIRKSAAYSDVESWSFAHEFLNSGDVSDGTLWLAGITHAGLVGGTVTDPEVTFGSVQLTNRVNTVADGISSLPRYRVRTITSETGAVTTVNYSDPQCVAGNLPTPDSNTMRCYPQKWTPEGNTSPRTDWFHKYVVASVSTADTTGLAPAVQTYYTYAGGAAWAYNDNKIIPDGYRTWSQWRGFQEVTTVVGDPSDTVERPKTTTTYFQGMSGDKQSSGVPRTASVTASDGTSVTDERALAGRPLEIIKYTKEGGTAHQGIITIPWVKATAGGGLKAAWFVGDAETRARSILANGQWRRRTVTREFDGNTGQVTRVSDSGDLSTGNDQTCTATSYADTQSTSGAWFVGFPARVVRSEGLCDSSALDPTESTVLSDDRTSYDGLTVGTAPTKGLPTKTERLAEFVSAAPTYQVTAVNEYDAFGRPKSVTRPSAQGTSSTIKNTVAYTMSADGTLATTVNTQDAGGKAFATTTSNAPEWGVATKIVDPNNKSTDIAYDPSGRVASVWLTNRARTATPSLKYTYTLSKMSASSVKTSTLTADGQAYVDSFEVYDALLRPRQEQDPTPAGGRIISGATYDSRGQQNQAIADVYASGAPSGGLVEFPDGAVPQLTKLTFDGLGRNTKSTLYTNNTQRWSTTTTYDGSDVTKTIPPNGAPPTTVVVDVRGRTIRSVEHGTPDLTTNYTYDLNDHLVGLASPAGSSTYRFDLRGRKIEATDPDTGSTTTVYTDSDKVLSTTDARGKSLYNTYDNLDRMTGQYAATTADSSKLVKAWTYDTVAKGYPSSQTRYIGGLTGDRIETKVVSYTAAYQPSETKMTLTGAAGSSRFAGLPTVLSRNLVYNVDQSVAVNYLPRVTVGSTTILSTEPLAYEYDSLGLVEQIRGLTGFIQDVTYDQLRQPQQVVAGRGAGYQLYSTREYDEGTNRLARAAVTSNLSSAGIADPHYSYDDAGNPTRVSDSVTEDTQCFRYDDHRRLSEAWTPDGGDCAAASSSSPLGGPAPFRQTWSFKNSGLRETQTTTSPAGTVQDNYEYPSSSDPHRNFASSVTRTAGGTNFTLAYSPDQSGNTLSRPDAAGTAQTLEWDNEGNLTKITDADGHETTYVYGVDDVLLVRESSTERTLFAGDTEVTYSKSGNVTTAKRLYSSGLGILGVRHGDDPGDLTLQIADPQGTASISLDATTLQPRYRFQTPYGERRGAEPAVWPDTRGFLNKPADADTGLVSVGAREYDPSGGRFISADPLLIADDPAQTLGYSYANNNPMTLADASGLASVCILEGTCNYTSNPAGGAPIVTGPKDSTPSSSPAPSGSSRGTSSSKSGSGSQQEKRGGILSGPDAYSNLIIGLSGLAIEYSFEHARSNLENKHIGPRILALNLLFLGGSGSEEKRALRESGRALAVSLGYGNGRNEKANIAADVSKFRKAVKVLGIAGVLYGTYDTGKEEWEGNSDKDTGERTGRTVISTTSKVAFGTGFAAVGGTICSPGVVLSALCATGGALVGEKVGGAVGNLINFIAFGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6T1</accession>
    <name>A0A0Q8V6T1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11145</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894885.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52952">
        <property type="protein sequence ID" value="KRC52952"/>
        <property type="gene ID" value="ASE19_11145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914276at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="16142" checksum="6B1E46B52F83C7CA" modified="2016-01-20" version="1">MYGDTELIRRRVSALRDQGADVRMLADELVARVDGLGWGGRAGQAMRERVVERARHLRTAADRHVAAADALADHAEAVDGTAEEIVQRQARVTALVTDARGRIAAIAARNETGEGPQVLPDPVDEQLAAFVPPPAGHRDWLAIDLPGLES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6U9</accession>
    <name>A0A0Q8V6U9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15625</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893518.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50049">
        <property type="protein sequence ID" value="KRC50049"/>
        <property type="gene ID" value="ASE19_15625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2218130at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="59" mass="6636" checksum="6A6CDA5EEC0F80D4" modified="2016-01-20" version="1">MDADRQEDAMSDVNVEQFQGFSDNHYQHGMHTLAWISLWTIIVLGVGAGVFGFLWGISH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V783</accession>
    <name>A0A0Q8V783_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16540</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893678.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50209">
        <property type="protein sequence ID" value="KRC50209"/>
        <property type="gene ID" value="ASE19_16540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1654295at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028349">
        <property type="entry name" value="PafC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043839">
        <property type="entry name" value="PafC_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026881">
        <property type="entry name" value="WYL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19187">
        <property type="entry name" value="HTH_PafC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13280">
        <property type="entry name" value="WYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016838">
        <property type="entry name" value="PafC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_PafC" evidence="2">
        <location>
            <begin position="13"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="WYL" evidence="1">
        <location>
            <begin position="167"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="339" mass="37196" checksum="050264D14CC0F24B" modified="2016-01-20" version="1">MSRPAPVASGARDQVARLLTLVPFLHHRDGVRLDDAAQLLGTSSDQVLRDLKVLFMCGLPGGLPGDLIDVDLDAIQTEQGSAITEGVIRVENADYLQRPLRLSATEASAIIVALRMLRDTSTGETRALVGRVLEKLEGAVATTAAAHVDVTPSPRDVEQVAIADRTRELNDAVAAGKQVRLTYYVPSRDEESDRVVDPRGVVSHGVFSYLDAWCHRAEGERLFRLDRITKLEVLDAEVATDPQPPRDLSSGLFTDVEGPDDVVVTLRLAPEARWATEYYPVKDVRIDPDGTAEVDLVVVDRTWLTRLLMRLAPYAEVVRPAGITEVFIARAQETLSLYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7L0</accession>
    <name>A0A0Q8V7L0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CoA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49095">
        <property type="protein sequence ID" value="KRC49095"/>
        <property type="gene ID" value="ASE19_17675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="445933at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032875">
        <property type="entry name" value="Succ_CoA_lig_flav_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13380">
        <property type="entry name" value="CoA_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13607">
        <property type="entry name" value="Succ_CoA_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="20"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="896" mass="96667" checksum="AAF90E016304A4E0" modified="2016-01-20" version="1">MEAPPAHWEGDVLLRDGRTAHIRPIRPEDDELLVEFYARVSDESKYYRFFSPMPVLSERDVRRFTHVDHVDRVALILVVQEQMIAVGRYDVVGDNEAEVAFLVEDDHQGRGIAQLLLEHLAQAGREKGVERFTAEVLPDNSRMIQTFRDAGYRVASGYHDGVITLEFPIDPTDTAIGVMRDREHAAEAASIDRFFRPRSVAIIGASRRQDTIGQVLVRNLVMADFTGRVYVVNPSAPAVSGLPAYKNVNDIPDDVDVAIVAVPAEAVTDVVLDCANKGVHGLVVISSGFAETGEEGRRRQRHLAGLCRSYGLRLIGPNCLGVINTDPSVQVNASLSSVMPNRGRAGFFCQSGALGSAILEKVKNRGLGISTFVSAGNRADVSGNDLLQYWEEDDATEVVMMYLESIGNPRKFSRIARRVSHRKPIVAVRSGRTTQGVPMGHTVRRIGAPQAAVDAMFRQAGVIQVDTLDDMFDVAQLLAHQPLPRGRRVAIVGNSDALGLLAADAASAVGLVVNRSVALGADATAEDFEDALDDAIDDPDVDSVIAVYIPPLDVSGEEVANVLAAVGEQSDKPLVSSFLGAEGIPELLRVPDVAGSSAGRGSVPSYPAVEAAVRALARVVEYAVWLHAPDGPPAEAGEVDDRGARRLVDGVLADPRIAASGREVELDQDQVARLLAAYGIELWRTLPVTDLDAAVAAGEQLGWNVVLKSTLPAVRERPDQVHVWRNINSREEMDDAWGDLSRLVDPATGRFVVQRNAPTGVPIAVRTFEDPLFGPVVSFGISGPVIELLGDWSYRIPPLGEHEVSSMVREVKSAPLLFGYRGAEAVDVAAIEDLITRVAELQNDLPQVSSLELSLVLAGVEGAEVLTASARVAAIKDPRPDSLVRRMPDLITTVPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7P0</accession>
    <name>A0A0Q8V7P0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13555</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53372">
        <property type="protein sequence ID" value="KRC53372"/>
        <property type="gene ID" value="ASE19_13555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="878192at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="680" mass="74836" checksum="C866EC2AA56551E7" modified="2016-01-20" version="1">MTDLLPEPSEDMVHDEHEHLDPLGDAEEGVVKNRAKVGSARPSSLLYTYGPGAIMDLPNFSIMPAGLGDWEAIWKRRDHVPSILEPRLLNVVRLHLGSQVDALRPFPWQPKRMGMSSEGSDLGIPGRVFPQWLRCTGCDYLGPLPRFHYTNTHPFRPDLAQFAHKNCPGRGGASKKKSGSPAVPAQHLLTCTNGHLDEFPYALWVHRGKKCPKAELPDLKMRDANVGKSVGSIIACASCGQTRGMAEAQGSVGREKLPQKCRGRHPHLNAFDSGCDARPALIMMGASNLWFASTQSIIVMPRTDAEEKEALGDQLRVALGVERIARYAGDLETLRDVADGKVDLSDVDDATLAGAVADALAPADTEEVRQEKLADWDPVDLLVPEWRYLQKPSLFPQQQNSSGLMVTEMKRDDDLHPRIRRVVAVNQMKKVNAVLGFTRLDEMDRVNDLVSRLVKLTRDGKPTWVPATEDRGEGIFLQLDLDEVATWEQAIIPTPLWDAHKSAHRRNFERRFSETANNVDPDVRLPAPRYWLLHSLSHSLIREMAMSSGYGAASLTERIYGWASAPQREAAAGLLICTTASDSEGTLGGLVALSEPSKLHNLVVRALRRAARCSSDPVCATRTPGDPEDFLHGAACHCCSFASETSCEKANRFLDRRFLLNLPTASGETVPGFFGSPDAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7P4</accession>
    <name>A0A0Q8V7P4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycerol acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13985</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897058.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53445">
        <property type="protein sequence ID" value="KRC53445"/>
        <property type="gene ID" value="ASE19_13985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1756450at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PlsC" evidence="1">
        <location>
            <begin position="38"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="258" mass="28380" checksum="D9487F94D72A35E1" modified="2016-01-20" version="1">MLDITYPPVIVTAKVLFKLMRQRVVVSGSESIPRKGGALLAINHTGYIDFIYAGAGAEPRKRLVRFMIKKEMMDAPGVGHLLRSFHHIRVDRASGMQSMKDALAYLRAGEVVGIYPEATISRSFEIKELKSGAARIAADAGVPLIPVIVWGAHRLMTKDHDKDFSRSAKTIVVKVGEPLYPTGEDVVAETEELRVIMKRMLDEVIAEYPEAEKAPGSWWTPARFGGSAPTPEKADEMDKAELRARAAKRAAKAAEKKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7P7</accession>
    <name>A0A0Q8V7P7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SGNH_hydro domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12670</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53211">
        <property type="protein sequence ID" value="KRC53211"/>
        <property type="gene ID" value="ASE19_12670"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359775" description="SGNH_hydro domain-containing protein" evidence="1">
        <location>
            <begin position="18"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="domain" description="SGNH_hydro" evidence="2">
        <location>
            <begin position="30"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="336" mass="36847" checksum="C27CC4D9B7F5CEAA" modified="2016-01-20" version="1">MLTLGVLLTSPTSTAAADEPDPSVPLKVLVVGDSISHGFAGDSTWRYWFWRETRRQGVPIDFVGPDRLPYLGPNARYEKPGLYFDRDHAARGGSTVNYHLARIDDLMETYAPQVVVVEIGINDLAHGDTAVGVVAETETLLARVWQHAATARVVLAELPSFPADAAVEAQTVLANKELAVRYGADPRVLLAKNRSGTSPRWQTAQMTSDGLHPNATGQTLLAQRFAEAFHRGGYLPQPPSLYRVRSWQPGVAPRVRRSGQRLTVDWSASLAEVKLASVRVLITRPNGTRLRGKTWFSAGVGRIHRTLPRGTWYVRLVPVRGTMQGVPVPATVVRIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Q5</accession>
    <name>A0A0Q8V7Q5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13670</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897113.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53390">
        <property type="protein sequence ID" value="KRC53390"/>
        <property type="gene ID" value="ASE19_13670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2135777at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359774" evidence="2">
        <location>
            <begin position="28"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="15133" checksum="B7B52C0C57759065" modified="2016-01-20" version="1">MRRGGAAAWLAPAVVGVLLSGCTFSSGDTTEVTESGQEAAGASGTGGQAADRKPAQPTPSAPHVSKLCDSLTAVYLTNISDAENAASIVNDWVRVTAQAPARLKDDLNAVGAYLVAAAKGDYATLKAASDIVGDALDHVDRYVTKVCKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7T5</accession>
    <name>A0A0Q8V7T5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MarR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895816.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53354">
        <property type="protein sequence ID" value="KRC53354"/>
        <property type="gene ID" value="ASE19_13460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1626703at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="11"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="148" mass="16037" checksum="AFBCAFA617F553EB" modified="2016-01-20" version="1">MAKPKHSLDLAEQLCFSLYTAQRLVTAAYRPLLDALDLTYSQYVAMLVLWESAPLTMGELGTRLGLDYGTVTPLVKRLEAAGLVVRSRSTEDERTVHVAPTDAGHELRAKAVGIPDSIAEVMALEPAEFATLKESLEHLSANVAGSNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V825</accession>
    <name>A0A0Q8V825_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13250</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895778.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53316">
        <property type="protein sequence ID" value="KRC53316"/>
        <property type="gene ID" value="ASE19_13250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="930905at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="9"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="150"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="220" mass="23908" checksum="957AB9E6590AFD02" modified="2016-01-20" version="1">MGGPVRPLRLVLAEDHALLRAGLTQLLEAKGFEVLHAVDNLPALEQALTDPEADAAVVDVRMPPTFTDEGLRAAIAARTRRPGFPVLVLSQYVEQLYARELLASGEGAVGYLLKDRVSDVAEFVDALHRVADGGTVLDPSVVAAVLERRRDTPLERLTDREREVLGLMAEGRANAGIAQALVVTEKAVAKHINSIFTKLDLPADTDDHRRVRAVLAYLRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8E8</accession>
    <name>A0A0Q8V8E8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">FAD-containing monooxygenase EthA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13680</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FAD-binding monooxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897111.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53391">
        <property type="protein sequence ID" value="KRC53391"/>
        <property type="gene ID" value="ASE19_13680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="324612at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004499">
        <property type="term" value="F:N,N-dimethylaniline monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020946">
        <property type="entry name" value="Flavin_mOase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00743">
        <property type="entry name" value="FMO-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="495" mass="54303" checksum="36B2B2153DE4AD5E" modified="2016-01-20" version="1">MTTSPEHLDVLVIGAGISGIGAARYLLTERPGTTFAVLEARGASGGTWDLFRYPGIRSDSDLQTFGYEFKPWTDKSAIASADKILAYLRETSAEYGIEPHIRYQHRVLGAAWSSEDARWTVDVERGDTGERFTLTAGWLFGATGYYDYEAGFTPTFEGRDRFRGEIVHPQHWPEELDYAGKKVVVIGSGATAVTLVPSMVAGGAEHVTMLQRTPTYIMPVPSEDKIANGLLKAFGQERGYAMARRKNILKQRAVYQFCQTFPKTARTLIRTINAKALPEGFDVDTHFNPPYGPWDQRLCAVPDGDLFRTIREGRAAVATDRIRTFTETGVLLESGEELEADVIVTATGLNLKLFGGVDITVDGHAFHAPDHVAYKGMMLSGVPNLAFAIGYTNSSWTLKVGLLCEHFCRVLAHMEAEGYDVCVPVAPDDLATRPLLDFAAGYVQRAVDELPRQGDRAPWTMSMSYADDARTIRGGEVVDDALAFSRVTAQVAVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9D9</accession>
    <name>A0A0Q8V9D9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06925</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53816">
        <property type="protein sequence ID" value="KRC53816"/>
        <property type="gene ID" value="ASE19_06925"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021452">
        <property type="entry name" value="DUF3103"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11301">
        <property type="entry name" value="DUF3103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="334" mass="36277" checksum="1B35E47EE97CD109" modified="2016-01-20" version="1">MATPDVSADSTLQAEAVGQAPEISAADARTNRVLDDLARQLAAGVSDAGVRKSVHAAVGKRFDGDEDALWSAVAEGSTFNAKVAAAANRTQTSRTTSEDIAAAARAYPRLQIAVPVNFDSWNPSDYTPLVAIRPQGVDDTTLDTVTAYDAKGNTVLLDGQTPPKNPVIVVGLNERTDETGKLKNEESVDRSAKPVADTSLAAAVTSYEVRMEVIYLEDDKEGWTGGDAEINMESKGDGCGFVYDDYNWEELNNDGDGWQKSRYLGRTTCAVVFYWWEDDGGSFDYSLEWKGFKFGVQMDNDDDKIGGGRVPYSDFAGANDWDQLSWTALWQMTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9J8</accession>
    <name>A0A0Q8V9J8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895278.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53846">
        <property type="protein sequence ID" value="KRC53846"/>
        <property type="gene ID" value="ASE19_07090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1811614at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018735">
        <property type="entry name" value="DUF2277"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10041">
        <property type="entry name" value="DUF2277"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="71"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="89" mass="9866" checksum="C1F2C88DA806E7DD" modified="2016-01-20" version="1">MCRNIRPLNNFEPPATSSEVSAAALQFVRKVSGTTKPSQANQAAFDRAVHEIAHITQHLLDELVTTAPPKNREVEAEKARERARVRYGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Z7</accession>
    <name>A0A0Q8V9Z7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08840</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895581.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54149">
        <property type="protein sequence ID" value="KRC54149"/>
        <property type="gene ID" value="ASE19_08840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377545at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="279" mass="30284" checksum="E1D20D94411F562E" modified="2016-01-20" version="1">MSAPSRRAVVTGAGPGSIGEAVARALDAEGWDVVVTTRSKPVEDLSWQPLDLADRGSVARFAHWYADRSDRLDLLVNSAGIHLDLGSRWQEPQLLDGHEIHWRTNYLGTVDLTTALLPALLTAAGATGDARVLHLVSQLHDRGTVDGLLGRPVDYDSWAAYGTSKLGLVHHAASLVAEHGDRGLRVIPVHPGAVSTNIANRGLETRPVLRRLRNLARPLERRVLMSPEASAALLVRLATEEATPSSYHHKGHVTDPSAAARDLAARRELADRTRDWLAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA22</accession>
    <name>A0A0Q8VA22_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53940">
        <property type="protein sequence ID" value="KRC53940"/>
        <property type="gene ID" value="ASE19_07620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2198341at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="110"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="226"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="246" mass="26962" checksum="6594D70618B1FEE5" modified="2016-01-20" version="1">MDVDGDRPAVAWVTSLPADWTTPRERLVLMLLALDTYDRRPPFRCRPRMAWLAAWSGEHRQRISEAVSALASATATRPALLQREGSNSGKNGRAGNRYVLLTEVSAMPDASREEMSAELSGEVSAEVSAQPDNLPSPLPLPSSDSLRSSASTLPRRRPIDDGIDPESDDPYTRFDAVEWYLDADHGLKLADVDGYTADRLAEASSMHPKAIANVLAQEVRVALARRPSVRTGHVSDAHNDPWRAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAD2</accession>
    <name>A0A0Q8VAD2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Urease subunit beta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16485</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50199">
        <property type="protein sequence ID" value="KRC50199"/>
        <property type="gene ID" value="ASE19_16485"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035550">
        <property type="term" value="C:urease complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009039">
        <property type="term" value="F:urease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043419">
        <property type="term" value="P:urea catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00407">
        <property type="entry name" value="Urease_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002019">
        <property type="entry name" value="Urease_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036461">
        <property type="entry name" value="Urease_betasu_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00699">
        <property type="entry name" value="Urease_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51278">
        <property type="entry name" value="SSF51278"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00192">
        <property type="entry name" value="urease_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="112" mass="11555" checksum="2318536A7E3C2429" modified="2016-01-20" version="1">MGIVTDGPGATRPGPGTVVLNADRSPDERRVLVVTNTGDRPVQIGSHLHLPDANAALAFDRDAAHGFRLDVPSGTSRRFEPGASQEVAIVALRGARVVPGLQVRAGAGDLDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAX9</accession>
    <name>A0A0Q8VAX9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11615</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894963.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53033">
        <property type="protein sequence ID" value="KRC53033"/>
        <property type="gene ID" value="ASE19_11615"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359870" evidence="1">
        <location>
            <begin position="24"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="123" mass="13220" checksum="FF5BCB91CACEDCC0" modified="2016-01-20" version="1">MLHTLRLRIALISAALVLGPMLAAVAPAEANALVCRASMSDSTPKQYSNVTVRVRTAAYAKVRTVAHYKTTNTTKPRTANSAGRANVGYYISGATPGYRVRVNVTVTKNGRTRTCATSFVPHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VB32</accession>
    <name>A0A0Q8VB32_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">AA_permease domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_11880</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895011.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53081">
        <property type="protein sequence ID" value="KRC53081"/>
        <property type="gene ID" value="ASE19_11880"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004841">
        <property type="entry name" value="AA-permease/SLC12A_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00324">
        <property type="entry name" value="AA_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="26"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="54"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="105"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="141"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="170"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="210"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="242"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="302"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="345"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="372"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="domain" description="AA_permease" evidence="6">
        <location>
            <begin position="45"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="41090" checksum="D45ABCA6583E0456" modified="2016-01-20" version="1">MTSTTQPANDQGTGPRLRGNLGTLELFFSIMAYNAPLVVVVGIIPIMLVAGNGVGTPLVFIISGIILAAFADGFIRMSKALPRPGAFYSFITAGLGREVGLGSGFTMLVAYFCVASGTVAFGGIVLGALVTDTLHGPSAPWYVWGAVFWGLTAVLGYLRIDLSAKITTLLLFGELVVVAVYDTAVILHGGGPDDLSAAPFSPAHLFDGSFAIGILFAMGMFGGFEVAVLFRDEVRDPRRAIPRATFGVIAAAGVLYSVTSWLFIDSLGVGNAVASVLADPEGVMHASISEFAGRFTTDAANVLVNTSAFAVLLTAHNVASRYVFNLSADGILPRALSGVHQRHGSPHAASLAMSVATAVIFVPIVVLDVEPLAFYAAILGIASVATLAVFFAATSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBB7</accession>
    <name>A0A0Q8VBB7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_12340</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895088.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53161">
        <property type="protein sequence ID" value="KRC53161"/>
        <property type="gene ID" value="ASE19_12340"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1080661at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041664">
        <property type="entry name" value="AAA_16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13191">
        <property type="entry name" value="AAA_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0349">Heme</keyword>
    <keyword evidence="2 3" id="KW-0408">Iron</keyword>
    <keyword evidence="1 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cytochrome c" evidence="5">
        <location>
            <begin position="166"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="399" mass="42734" checksum="BD100B6E835FD615" modified="2016-01-20" version="1">MDPIRNPYAPGAGQRPPELAGRDEQLAAFDVVLERVSRGRPERSLVLTGLRGVGKTVLLNALRSAAVRKGWGTGKLEARPDQSLRRPLSSALHQAVRELGHPEPAETDHVLGVIRSFAQRDAGSDTKLRDRWSPGIAVPVVRGRADSGDVEIDLVELLTDVGGLAADVGKGIGIFIDEMQDLGVDDISALCAACHELSQNGLPVIVVGAGLPHLPAVLSASKSYSERLFSYQRIDRLSRDSADRALVAPAGEEEAGFTAEALDAMYDATRGYPYFIQAYGRSVWDLAPRSPITADDVAVAGPEAERELAVGFFGSRFERATPAERDYLRAMADAAGDDDDPVGSVATSDVAAFLGKKPQSLSPARDSLLKKGLIYSGERGRIAFTVPHFGRYLRTQALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBB8</accession>
    <name>A0A0Q8VBB8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11115</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894880.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52947">
        <property type="protein sequence ID" value="KRC52947"/>
        <property type="gene ID" value="ASE19_11115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="600220at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033186">
        <property type="entry name" value="HerA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05872">
        <property type="entry name" value="DUF853"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="2">
        <location>
            <begin position="73"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="486"/>
            <end position="514"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="549" mass="58030" checksum="AD9A2FDA927BEC25" modified="2016-01-20" version="1">MTQEQTPGETPAPETPAAEAAPAAEAVPAATNPVEEAVAPGYAFEGPALELGGLMVGPDQLSGSTIRIPLGMLNRHGLVAGATGTGKTKTLQLLAEQLSANGVPVFAADIKGDLSGIATAGEANDKLLARTKSVGQDWKATAFPVEYYALGGQGTGIPVRVTVTSFGPILLSRVLGLNDTQESSLGLVFHYADKQGLPLLDLQDLRAVVQHLTSEEGKADLKELGGLSAATAGVILRELIAFADQGAEAFFGEPEFDSADLLQQAPDGRGLVSLVELPNLQDRPAIFSTFLTWLLADLFHDLPEVGDVDKPKLVFFFDEAHLLFKDASKPFLESIAQTVRLIRSKGVGVFFVTQSPTDVPDDVLAQLGSRVQHQLRAHTPNDAKALKATVNTYPKSAYADLGEVITTLGIGEAIVTVMGEKGAPTPVAWTRLRAPESLMAPSSAESMEATVKASPRYARYAEVVDRESAREILAKKLEDGAAAAEKAKAEEEAADKPAAKKAEARRKDDGGGAGEIVKDVVKSSAFKQFMRTAAAEIARGMFGTARRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBE4</accession>
    <name>A0A0Q8VBE4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12530</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895120.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53193">
        <property type="protein sequence ID" value="KRC53193"/>
        <property type="gene ID" value="ASE19_12530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1999756at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359888" evidence="1">
        <location>
            <begin position="37"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="176" mass="17919" checksum="772384B495D4150B" modified="2016-01-20" version="1">MKPLVAAGTAGAASLALVAGLWLAVSGSDGSPSADAASLPTGPVVNTSLGLPTPTGDPELPGIRGLAPASGTVGRLAGPFDDRFVTRGVTFDGRALHGSLTVTSDVSEILALQVLAGFYDADGRFVGQARWDFRPPEEGHEEGHPDESVDFVVEVPAKLRGRAAAASYGVTNLVNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCA6</accession>
    <name>A0A0Q8VCA6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Serine/threonine protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05450</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54901">
        <property type="protein sequence ID" value="KRC54901"/>
        <property type="gene ID" value="ASE19_05450"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031634">
        <property type="entry name" value="PknG_rubred"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031636">
        <property type="entry name" value="PknG_TPR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16919">
        <property type="entry name" value="PknG_rubred"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16918">
        <property type="entry name" value="PknG_TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="2">
        <location>
            <begin position="230"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="104"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="106"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="806" mass="85370" checksum="B1A406F212C8AFFF" modified="2016-01-20" version="1">MSGPACTQPGCTGSILDGYCDVCGMPGDAPAQPAAPAAPATPAASMPAGVSAASTSKRAPAVNGDACPQPGCSGKILDGYCDVCGSPALPGARVAEAAAIAESQPLSGREGTSATAASRVQSAAIGSKRAGTTGSYATRRTRTGSQRMRSARLGAGLTVVPPAPPVDAAKAIMADPQVPEDKRSCSKCGNAVGRSINGQPGRSEGFCPNCGQQFSFTPKLVQGDLVAGQYEVAGALAHGGLGWIYLARDRNVSNRWVVLKGLLNSGDPDALAAAIAEQQFLAQVEHPLIVEIYNFVTHEGAGYIVMEYVGGKSLKQILKQRMSANNGEYDPLPVDQALAYILELLPAFQYLHDLGLVYCDFKPDNMIQVGDAMKLIDLGGVRRIDDDESAIYGTVGYQAPEVAEIGPSLASDIYTIGRTLVVLTMEFRGYQGTYLHSLPPVDATPLFQQNDSLYQLIAKCCAPDPADRFASVDEMRSQVLGVLREVVARKRQGTATTSAASVLFESPATARPITEWSQLPKLRQDTTDPQYAWLSSIGSDDPKKRLADLQQAPEDSAEVWLARAAAALDLGDPVTAKAHAQSLLGDDPWEWRALWIEGLAAVQAQDWETAKASFNAVYQQVPGELAPKLALAFACERGQLPEVAEGLYQVCASTDAAYVPPAAFGMARVRAERKDVVGAVAALDLVPNTSRGYTESRQQRAEVLLSGGVRDLTVLDQAMRTIESSSVDGQTRQRYTVRILSEALPVVTSGPKLPDGARIGSVAATEIGVRDGLENALRMLARDAIDLKERVTLVNQANAVRNWSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCA8</accession>
    <name>A0A0Q8VCA8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_05185</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894223.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54858">
        <property type="protein sequence ID" value="KRC54858"/>
        <property type="gene ID" value="ASE19_05185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="22"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="7">
        <location>
            <begin position="115"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="88"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC54858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="179" mass="19945" checksum="D8FA23079A36FB2B" modified="2016-01-20" version="1">MTTDDDVVAAAKRGDPDAWRELYRAHASRLVVWLRGRPCGDEGPEDIASGAWLVAAEKVAGFTGTSDEFAGWLFGIARNLSSNAQRRAARRDRISLGDDERTAPGPEHETGADDWARRLLRTLPERERDVVTCREVLDMDVPTTASALGISAVAVRVAHHRALKRLRQEMEREKISERM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCJ0</accession>
    <name>A0A0Q8VCJ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05780</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894118.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54958">
        <property type="protein sequence ID" value="KRC54958"/>
        <property type="gene ID" value="ASE19_05780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="783425at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="407"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="430" mass="45699" checksum="745EBDF3FB358484" modified="2016-01-20" version="1">MTSFTPLPGDPHAVATEGHQMTSAAARMLAAAKTLNRIADTSDFQSDAIDGLRKNAGEMADVMVDAWYRYQFAGKALTEYAPKLEAAQKQADRAIAQHGSTDVWSARGHVARLEAEKFNPLLGADERAELDAQISRAHSDLSHQESVAGQAEALYNDAVADRDRAAVAAMNQIESANKVSGLNDSFWDNFKGFREKYLDAIVEAVIDVLDAVADVLLLIAPFTGPLMPYVFAAGAILKAATLVWMTFQVLTGQKTIGQFLERYIKVVGGLVLTAAKLLDPKSKFGVAKDVFGLVVKHGEPILENHGGPKLTLDYYEYFLDRDAYVEKYGADGVAAQSAFTGGMTILDPAGGALDMGAGMAGAYFDNEILDPSTVWTTDDLATHDVSGPVGTDYSNVDPESIVGNAFGHPASGSPHASRHVVAAGSGGGGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD13</accession>
    <name>A0A0Q8VD13_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14700</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896931.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53571">
        <property type="protein sequence ID" value="KRC53571"/>
        <property type="gene ID" value="ASE19_14700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1983417at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="87" mass="10043" checksum="8F86CC96F554F007" modified="2016-01-20" version="1">MHVDPQLLRHVEESSGLSPAEARRLVEDVLSFHDEPVEAWVRRRHAELKTYGSKNADIFALLKEELRGHVVAAPELSERQLRRMIYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD21</accession>
    <name>A0A0Q8VD21_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">High-affinity Fe2+/Pb2+ permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_05510</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the oxidase-dependent Fe transporter (OFeT) (TC 9.A.10.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894170.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54911">
        <property type="protein sequence ID" value="KRC54911"/>
        <property type="gene ID" value="ASE19_05510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2018349at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033573">
        <property type="term" value="C:high-affinity iron permease complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005381">
        <property type="term" value="F:iron ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004923">
        <property type="entry name" value="FTR1/Fip1/EfeU"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31632">
        <property type="entry name" value="PTHR31632"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03239">
        <property type="entry name" value="FTR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="38"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="70"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="114"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="157"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="187"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="248"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="284" mass="30205" checksum="771E29DA7C15EFB7" modified="2016-01-20" version="1">MLANFLIGLREGLEAALVVSILVAYLVKSDRRELLPRIWAGVALAVGIALAFGAAPTFGPRGLTFEAQEAIGGTLSLVAVAFVTWMIFWMSTAARGLGADLRGQIDRAADAGRWSLALVAMLAVGREGLETALFLWAATQAGTRESVGSVTPTWEPLVGALLGILVAVVLGYLIYRGAVRLNLSVFFTWTGAFLIVVAGGVLAYGFHDLQEAGILPGLHDLAFDVSDAIPPSSWYGTLLKGVFNFSPATTWLEALAWVLYVVPVGALFLFRTRLSRPRTTPASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDF7</accession>
    <name>A0A0Q8VDF7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">50S ribosomal protein L18</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rplR</name>
        <name evidence="8" type="ORF">ASE19_06505</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S and 23S rRNAs.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the universal ribosomal protein uL18 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894485.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55078">
        <property type="protein sequence ID" value="KRC55078"/>
        <property type="gene ID" value="ASE19_06505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1963491at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01337_B">
        <property type="entry name" value="Ribosomal_L18_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005484">
        <property type="entry name" value="Ribosomal_L18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004389">
        <property type="entry name" value="Ribosomal_L18_bac-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12899">
        <property type="entry name" value="PTHR12899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00861">
        <property type="entry name" value="Ribosomal_L18p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00060">
        <property type="entry name" value="L18_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 7" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC55078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="127" mass="13681" checksum="C4320898429ACBEF" modified="2016-01-20" version="1">MAITLKHKRNLSARASSKLRRQVRGRKKISGTAARPRLVVTRSTKHITAQVVDDLIGKTLVSASTLEGDLRAFDGDKTAKAKKVGELVAARAKEQGVETVVFDRSGNKYHGRIAALADGAREGGLTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDS2</accession>
    <name>A0A0Q8VDS2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10580</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894781.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52848">
        <property type="protein sequence ID" value="KRC52848"/>
        <property type="gene ID" value="ASE19_10580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041617">
        <property type="entry name" value="TPR_MalT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17874">
        <property type="entry name" value="TPR_MalT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="447"/>
            <end position="509"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="509" mass="53830" checksum="8D1737F6CD79B404" modified="2016-01-20" version="1">MGDRPTSDLELDLWVQIQAGDFDGAFAGATRLLMVSDDPVQCGRVEAAIGLMMQRTGLMADSRDQFARALALVGDSPPDRAVVLAVASLSSVLSGDLDRAEVDAREAIELAGEQGLDFAVRQARTTLAAVHLGRGRLEEALACAEAAAAYDDAGIGQAEYRSTAYVLLAMVLAELDRMDEAHTTIAEGIRIAHEEGDTGQVAWYLASQAMLHFIDGSWEAARDEARRSLARAEHTGALAARPLAWGIAACVEGLRGNVGDARVLIAKARSHRLGPGGGLGEEWVALAVAATTDDPRERYDALCEAWFRLRGMPSFLAWKVFAHPLVVLALQRGDRAVAEAVSARVGEAASASGTTSARATALCCAAAISGSSEALDAGLDLLRRSGRPLPLAFGCVAAARTTPDPVRRMDALREAAAVFHRLGATTWSAVVTRDLVRVAVEPALARRAGPWHLLTPGEQRVVRLAVEGLTNPLIAERLGVSPRTVQAQLASACRKCDVTGRVQLAGLFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDS9</accession>
    <name>A0A0Q8VDS9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Patatin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_05290</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894399.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55142">
        <property type="protein sequence ID" value="KRC55142"/>
        <property type="gene ID" value="ASE19_05290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="373926at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002641">
        <property type="entry name" value="PNPLA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01734">
        <property type="entry name" value="Patatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51635">
        <property type="entry name" value="PNPLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="1 2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PNPLA" evidence="3">
        <location>
            <begin position="1"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="GXSXG" evidence="2">
        <location>
            <begin position="35"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="DGA/G" evidence="2">
        <location>
            <begin position="188"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC55142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="307" mass="32119" checksum="F0AB6BE1C5377C21" modified="2016-01-20" version="1">MIGCGGTLGFAWTAAVLAELERQGWDPRTAEVLIGTSAGAELVALLGSGVRACAIDAASDRRVAAHLSSPDAPGRLPGLPRPWWPGLGLTRAAVRRRVDVLAGLAGLLPRGGGNPHWLVELGDALETRSGWTKHPATWLVAADARTGERVALGHPDAPTTTLGTAIAASWAIPGWFPPVAVDGRQLLDGGTVSPTSADLLLPEVAAGRVDEVVVVAPMSSHGGAPAKGAARIERLLRHPMTRRVDHEVAALRAAGARVSRIEPTRADLGAMGANFMDADRLDDVRTTARRSAPSLVSRRLKTLEPTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE98</accession>
    <name>A0A0Q8VE98_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Recombination protein RecR</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">recR</name>
        <name evidence="9" type="ORF">ASE19_08310</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the RecR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895489.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54057">
        <property type="protein sequence ID" value="KRC54057"/>
        <property type="gene ID" value="ASE19_08310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1661836at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01025">
        <property type="entry name" value="TOPRIM_recR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00017">
        <property type="entry name" value="RecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000093">
        <property type="entry name" value="DNA_Rcmb_RecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000445">
        <property type="entry name" value="HhH_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023627">
        <property type="entry name" value="Rcmb_RecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023628">
        <property type="entry name" value="Rcmb_RecR_C4-type_Zn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015967">
        <property type="entry name" value="Rcmb_RecR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034137">
        <property type="entry name" value="TOPRIM_RecR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30446">
        <property type="entry name" value="PTHR30446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00633">
        <property type="entry name" value="HHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02132">
        <property type="entry name" value="RecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13662">
        <property type="entry name" value="Toprim_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111304">
        <property type="entry name" value="SSF111304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00615">
        <property type="entry name" value="recR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01300">
        <property type="entry name" value="RECR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5 7" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="6 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0862">Zinc</keyword>
    <keyword evidence="3 7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Toprim" evidence="8">
        <location>
            <begin position="79"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="7">
        <location>
            <begin position="56"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="198" mass="21713" checksum="DF78EE9C84E09BBA" modified="2016-01-20" version="1">MYEGVVQDLIDELGRLPGVGPKSAQRIAFHLLQADPADVRRLADVLIEVKDKVKFCSICFNVAEDDQCRICRDPRRDPSVLCVVEEYKDVVAIERTREFRGRYHVLGGAISPIDGIGPEQLHIRELLTRLGDGAVTEVILATDPNLEGEATATYLTRMLGPLGLRVTRLASGLPVGGDLEYADEVTLGRAFVGRQTAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEE0</accession>
    <name>A0A0Q8VEE0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">Uracil phosphoribosyltransferase</fullName>
            <ecNumber evidence="3 11">2.4.2.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 11">UMP pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">UPRTase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">upp</name>
        <name evidence="12" type="ORF">ASE19_11375</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>diphosphate + UMP = 5-phospho-alpha-D-ribose 1-diphosphate + uracil</text>
            <dbReference type="Rhea" id="RHEA:13017"/>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="11">Binds 1 Mg(2+) ion per subunit. The magnesium is bound as Mg-PRPP.</text>
    </comment>
    <comment type="activity regulation">
        <text evidence="11">Allosterically activated by GTP.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 11">Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uracil: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the UPRTase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.9" evidence="3 11"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894919.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52989">
        <property type="protein sequence ID" value="KRC52989"/>
        <property type="gene ID" value="ASE19_11375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1581906at2"/>
    <dbReference type="UniPathway" id="UPA00574">
        <property type="reaction ID" value="UER00636"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004845">
        <property type="term" value="F:uracil phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044206">
        <property type="term" value="P:UMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006223">
        <property type="term" value="P:uracil salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01218_B">
        <property type="entry name" value="Upp_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034332">
        <property type="entry name" value="Upp_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005765">
        <property type="entry name" value="Ura_phspho_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01091">
        <property type="entry name" value="upp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 11" id="KW-0021">Allosteric enzyme</keyword>
    <keyword evidence="5 11 12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9 11" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="8 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11 12" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="5-phospho-alpha-D-ribose 1-diphosphate binding" evidence="11">
        <location>
            <begin position="130"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="region of interest" description="Uracil binding" evidence="11">
        <location>
            <begin position="202"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="197"/>
        </location>
        <ligand>
            <name>uracil</name>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01218"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC52989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="213" mass="22906" checksum="4FEA3321077313BB" modified="2016-01-20" version="1">MRTLVVDHPLVAHKLTVLRNQETDSPTFRSLADELVTLLAYEATRDVRVEECDIVTPVAPTTGVRLASPRPLVVPILRAGLGMLDGMMRLLPTAEVGFLGMVRNEETLEAVTYAERLPEDLTGRQCYVVDPMLATGGTLAAAIRFLVDRGADHITAVCLLAAPEGCARLEQDLADLDIPVTVVTAAMDERLNEKGYIVPGLGDAGDRLYGVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG21</accession>
    <name>A0A0Q8VG21_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF3566 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_13605</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897126.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53377">
        <property type="protein sequence ID" value="KRC53377"/>
        <property type="gene ID" value="ASE19_13605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2036654at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021949">
        <property type="entry name" value="DUF3566_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12089">
        <property type="entry name" value="DUF3566"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="69"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="127"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3566" evidence="3">
        <location>
            <begin position="50"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="171" mass="17983" checksum="6A8E9C09A859A4CD" modified="2016-01-20" version="1">MTERVEETTAVRPPVDGPPSSGPGSPSRPIASGPVVTPAASNTVVRPRTPRRARLRLTRIDPWSVMKTSFLLSIAFAVVTVVSVAMVWQVLGAAGVWDSINSTIQESIGGEDVAGFRIEDYVGTSRVLGFTMLVAAIDVVLITAASTLIAFLYNMSAALLGGIEITLAEDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGK3</accession>
    <name>A0A0Q8VGK3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12020</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895034.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53106">
        <property type="protein sequence ID" value="KRC53106"/>
        <property type="gene ID" value="ASE19_12020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="31007" checksum="3960C69E1E683C56" modified="2016-01-20" version="1">MAALEGRVAIVTGAGQGLGREHALLFAAEGAYVVVNDVGPGLAHAVVEEITAAGGRAIAHTDSVSDWSAAEGLVEAAVQGFGDLHVVVNNAGILRDRMLVNMTEEEFDSVVDVNLKGTFAVGHFAARYWREQSKLGHDVDRALINTSSGAGMQPGVGQTNYAAAKAGIAAMTQVWSKELKRVGVRVNGIAPFARTQTTQATPGLVERLAETESDPDFDPYHPGNISPLVAYLASTDCIMTGHVFRVVGDLIGVYEGWHLVDTFENGRRWEIPGVAKALSSVPAEPVVEPPKMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH35</accession>
    <name>A0A0Q8VH35_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Succinyldiaminopimelate transaminase</fullName>
            <ecNumber evidence="2">2.6.1.17</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04790</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.17" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894288.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54793">
        <property type="protein sequence ID" value="KRC54793"/>
        <property type="gene ID" value="ASE19_04790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="417859at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009016">
        <property type="term" value="F:succinyldiaminopimelate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019880">
        <property type="entry name" value="OxyQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03539">
        <property type="entry name" value="DapC_actino"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="34"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="372" mass="39368" checksum="A4153E5042D0E622" modified="2016-01-20" version="1">MVEASKPVSGRLPDFPWDKLTQYAATARAHADGIVDLSIGTPVDPTPEVARRALAEAADSPGYPLTVGTPEVRQAVVDWLAGTHGATGIGTDQVLPLIGSKEFIASLPTFLGLGPGDVIGYPELAYPTYEVGAALVGAQAVATDSLTTFGPETPTLLWINSPSNPSGRVLPKEHLKKVVDWCRERGVLLVSDECYLDCVWEGEAYSVLHPDICGGSSEGILVVHSLSKRSNLAGYRCGFVAGDRAVIAELLAVRKNLGLIMPGPAQHAMAAVLGDEAHVKEQHERYLARRTRLRAALEASGYTIDHSEASLYLWTTKGPDGPGAWELVAELAELGILVAPGAFYGAAGSHHVRIALTATDERIDAAVARLTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH95</accession>
    <name>A0A0Q8VH95_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895776.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53314">
        <property type="protein sequence ID" value="KRC53314"/>
        <property type="gene ID" value="ASE19_13240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2024718at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="110"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="16579" checksum="52FA63B153555B0E" modified="2016-01-20" version="1">MRPGKGPFVALLLVAAVANLPFVHHTWQQWRIDRDGVHVTAEVTGTDVLRSDHYVVRLRLPEDIDPDRRTWPIEVDRSAYRTAEDSGEIGVTVLPGHPSAQRVDGERADALGWIIIGAVDLLLVLLALLLWTVRRRMTSDVIAGSTSEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHT1</accession>
    <name>A0A0Q8VHT1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Polynucleotide kinase-phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04150</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893017.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57000">
        <property type="protein sequence ID" value="KRC57000"/>
        <property type="gene ID" value="ASE19_04150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="72029at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07423">
        <property type="entry name" value="MPP_Prp_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041780">
        <property type="entry name" value="MPP_PrpE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024028">
        <property type="entry name" value="PNKP_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032390">
        <property type="entry name" value="PNKP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032380">
        <property type="entry name" value="PNKP_ligase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16536">
        <property type="entry name" value="PNKP-ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16542">
        <property type="entry name" value="PNKP_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04075">
        <property type="entry name" value="bacter_Pnkp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Metallophos" evidence="1">
        <location>
            <begin position="185"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="domain" description="PNKP_ligase" evidence="3">
        <location>
            <begin position="467"/>
            <end position="775"/>
        </location>
    </feature>
    <feature type="domain" description="PNKP-ligase_C" evidence="2">
        <location>
            <begin position="778"/>
            <end position="836"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="836" mass="91772" checksum="0ABCEF3BF1870CE7" modified="2016-01-20" version="1">MTDPNRISVPALGLVVLVGVSGSGKSTFARRHFKPTEVVSSDFCRGLVADDENDQSATPDAFDVLHHIVGTRLRRGLLTVVDATNVQQAARASLVKLAKSHDVLVDAIVVDVPEAVAMERNRLRPDRDFGDHVVARQHRDLKRSFRRLAKEGFRRVHVLRGTDEVEAAEVVRERSWNDLRDVHGPFDIVGDVHGCASELRTLLTELGWTIRYDGDVAVDATHPDGRQAVFVGDLVDRGPDTPGVLRLVMGMVASGNALCVSGNHEAKLVRALRGSKVTVAHGLAESLAQLEREPEEFRQQALAFMDGLISHYVLDDGRLVVAHAGLKEAYHGRSSGRVRAFALYGDTTGETDEYGLPVRYPWAQEYRAQAMVVYGHTPVPRAEWVNNTICLDTGVVFGGELTALRYPEREVVAVPAEQEWYAPVRPLGPATGDREASVLRIGDVAGTRWLETTHAGKVKIPEENAAAALEVMSRFAVDPRWLIHLPPTMSPVATSRREGFLEHPEQAFNEYAEWGVTRVVCEEKHMGSRAIAVVAQDADVAERRFGVADGSTGVVYTRTGRPFFADTRELVGRLRASAQPLFEALDTDWLALDCELLPWSAKALDLIKAQYASVGAAARAVLPEARSVLDRAAARGLDVTDLADRVDRRLGHAEAFRDAYAAYVRPTQGLDGVTLAPFQVLAAEGRALALTESHEWHLAQLALLEGDLITPTRHRFVDLASAAEREAATAWWLDLTAAGGEGMVVKPAHLTTGRVQPGVKVRGREYLRIIYGPDYTDALDVLRQRHLGRKRQLALREHGLGLEALTAFVGHEPLWKVHQAVFAVLALESEPVDPRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI09</accession>
    <name>A0A0Q8VI09_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cardiolipin synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_03900</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892972.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56955">
        <property type="protein sequence ID" value="KRC56955"/>
        <property type="gene ID" value="ASE19_03900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1881748at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008808">
        <property type="term" value="F:cardiolipin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032049">
        <property type="term" value="P:cardiolipin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022924">
        <property type="entry name" value="Cardiolipin_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001736">
        <property type="entry name" value="PLipase_D/transphosphatidylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00155">
        <property type="entry name" value="PLDc"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04265">
        <property type="entry name" value="bac_cardiolipin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50035">
        <property type="entry name" value="PLD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="domain" description="PLD phosphodiesterase" evidence="8">
        <location>
            <begin position="219"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="domain" description="PLD phosphodiesterase" evidence="8">
        <location>
            <begin position="403"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="490" mass="54972" checksum="53762ED5B3D0AB1D" modified="2016-01-20" version="1">MTFPVPTSALGWTILGLDIVLRFVALGVIPGNRKPSTGMAWLLLIMIEPIIGFSVFLLLGRTRLGNRRITRQKTAITAIRERADRLPLSFDHGRLPAPIARVARLNHHLGALPLTGGNEVQLWPDYVGVIEEMAREVDRARSHVHVEFYITAWDDVTDPLFQALLRATERGVDVRLLFDHLGSRGLPGYRAMLRRLGETRIAWHPMLPIKPLKGRFRRPDLRNHRKILVVDGSVGFTGSLNLTEPGYNKPKNHKLGREWVELMVRLEGPVVGGLNAVFASDWYVETGEVVELVPVFGEPDVRPDEVLDVPCQVVPSGPGLVAENNLRMFTTLIYAATERISLTSPYFVPDESLLYAVTTAAERGVDVELFVSEVSDQFMVGHAQASYYRALLQAGVRIYRYPAPYILHAKHFTIDDDVAVIGSSNMDMRSFGLNYEVSLMLPDPAVVERLRGVQDAYRAISQELTLPEWDQRPARTKYVDNVMRLTAALQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI11</accession>
    <name>A0A0Q8VI11_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">3-phosphoshikimate 1-carboxyvinyltransferase</fullName>
            <ecNumber evidence="7">2.5.1.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">5-enolpyruvylshikimate-3-phosphate synthase</fullName>
            <shortName evidence="7">EPSP synthase</shortName>
            <shortName evidence="7">EPSPS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">aroA</name>
        <name evidence="9" type="ORF">ASE19_03525</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21256"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57701"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
            <dbReference type="EC" id="2.5.1.19"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 6/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the EPSP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.19" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892903.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56886">
        <property type="protein sequence ID" value="KRC56886"/>
        <property type="gene ID" value="ASE19_03525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="533829at2"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00089"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003866">
        <property type="term" value="F:3-phosphoshikimate 1-carboxyvinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01556">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00210">
        <property type="entry name" value="EPSP_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001986">
        <property type="entry name" value="Enolpyruvate_Tfrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036968">
        <property type="entry name" value="Enolpyruvate_Tfrase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006264">
        <property type="entry name" value="EPSP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023193">
        <property type="entry name" value="EPSP_synthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00275">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000505">
        <property type="entry name" value="EPSPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="SSF55205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01356">
        <property type="entry name" value="aroA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00104">
        <property type="entry name" value="EPSP_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00885">
        <property type="entry name" value="EPSP_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="EPSP_synthase" evidence="8">
        <location>
            <begin position="13"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="region of interest" description="Shikimate-3-phosphate binding" evidence="7">
        <location>
            <begin position="26"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoenolpyruvate" evidence="7">
        <location>
            <begin position="95"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Shikimate-3-phosphate binding" evidence="7">
        <location>
            <begin position="169"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="317"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="345"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>3-phosphoshikimate</name>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>3-phosphoshikimate</name>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="348"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="389"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="414"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="427" mass="43920" checksum="515FAAEC256CDBD6" modified="2016-01-20" version="1">MSTPDPWPAPTVSSPVDRTVSLPGSKSLTNRALVLAAIADGPSVVRRALRSRDTLLMAQALTALGASVDTSGEDWAVVPLDGTVPGGRADVDCGLAGTVMRFVPPITGLVAGDVAFDGDEHMRKRPVGEILTALRGLGVPVSDGDALPFTIAGTGTVAGGTVVIDASASSQFVSALLLAGARFEAGVDVRHDGEPIPSLPHIEMTIAMLRDRGVAVDDSEADRWVVAPGPVKAYDEAIEPDLSNAAPFLALAAVSGGSVTVRDWPTATTQAGDALRDLLAQMGCTVERVAEGLRVIGPADGWRGLQGLQADLHDVGELAPAVAALCALAQTPSHLSGIAHIRGHETDRLAALATELSALGADVDEHPDGLTIRPAPLSPGVFHTYADHRMAHAGVIVGAAVPGVLVENVATTSKTFPDFADFWSGLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI28</accession>
    <name>A0A0Q8VI28_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_03605</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892919.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56902">
        <property type="protein sequence ID" value="KRC56902"/>
        <property type="gene ID" value="ASE19_03605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1781at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="SSF49265"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fibronectin type-III" evidence="4">
        <location>
            <begin position="1479"/>
            <end position="1564"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="4">
        <location>
            <begin position="1571"/>
            <end position="1668"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="356"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="368"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="2055" mass="217812" checksum="73096CC272875A49" modified="2016-01-20" version="1">MKGRWRRTASGTALTVALGSLVVLAWQHDGKPFTEVDLNDGGVWVTNEELALTARLNPQIEELDLGVDAGTREFDVIQRATSVYLDDQTSERGVKAVDVAMASAGEATSLPTGAVVAHGGDTFVVVDPRSGKAWVRPESSFSSFSADATEPVASDAVTAAVGTDGRAWVLDRDGGATPFTPDGEEVSSGDTVDLADGDIGRDEKQLQLTVVGEEPVLFAATTTELYVPDADPIPVDAADPTSVRVQEPSDERSVVSIATNDGLYAADLDGGHLERISEGDVNGTPAPPVYLSGAQCVYSAWSDPSSPHNYLRDCADDNDDDPDPIQHMQEGADLRFRVNREVVVLNDVRTGDAWVVQNPGKAKADNWPQVEPKNENKSKLKKTTEEIPDQENRPPEPNDDELGARPGRSTVLPVVALNDHDPDGDIIRIVRQEVMSGPDVEVKIVGGGTQLQVAVKAEDRGVAVIRYYVTDGRVSDKPYATVRLKIIGNGEHTAPRLMDDRKQAQELTVTRRATSSYYLLADFYDKEGDDLTLLDARARGGGVEYRPDGTITFTDTGVVPSVSEIEYTINDGYDDYVGKLKVNVVGETAPPELVPDLSSGVANTQVVVQPLANDRNPEGRELTLKSVRVVGDAAGTEISKDLESGTFTFKATRAKPYYLEYAAYNSSATATAQVRLDIESPPKNNRPPVAVRDKVVVSPGATAQADLLLNDLDPDGDVLVVKRIDRPVGAGVKVSLVDKRLAVVSLTDDLSEPVTVEYLVSDGRSPTTGQLVISQRPNSQANRPPVANKDQVTVRAGSVTTIPVLANDSDPDGGKPRLIQDDLDLEDQDLDIWVAGDSLRLRAPDKPGNYSVVYGERDADGLRASAEVSIFVVEDSARNNHAPLPQPIIDRVITGRPKVISVDLVGADPDGDSVAFHSFLSAPSLGRILDTGVDWIRYEAFEGKAGTDFFQVRVQDKYGATGVAEVRVGVVPEEEVNQPPVALDDTVLVQPNRTIAYDVLTNDVDPDDDPLRIEELNANQKANHENGFVEVRVGNAPEQGSTPINVGYTIEDAAGARDSAILKIVASRDAPFYSPVARDDVAELGDIIGRDPGESVEIPVLDNDLDFDGAKADLHVTGCDAGKGGDCKVVEGDTTVRVELKAQDQVVLYKLDDADKESASTYGVIYVTGTDNVPPQLTTDEDKIPVEATAGEPIVFDLADLVITRAGRQPLIVPDPFPTSIYGSVDNVPGEPTSLEFTPARGRVGPASVSVTVTDGRSLGENGALSSLLTIPIDIKPVGNVAPTMRDAAVDVTAEGDGAEVDLEGLTRDANDDDLASMTYSITSAPDGLDAKIDGEGHTLSIEASGAKVGEVLDVEVAADDGHGGTATAVVSARIVGSDIPVLQIPVLNVAADEGEETTVDLAESAVNRYPDPTIEAKNPLIEGNGKLRGLKAHGSKVSFTPTDTGTSTIKVTVSDASGDASRDVTARINVTVMDVPDAPAQPTLSTVEASSAVLSWVEPSANGAPIKGYEVEGSHGFKQSCPRTTCRLDGLTPGDTYTFTVRAENSEGWGDESPASEEITPNEAPDVMAAPTIVVESKPTGSKMDGQLTLRWTPPHNEGSEILTYEIKEAGSTHVWEADGNQTSHTITGLSNGTSYAFEIRAVNLVEPKREFSGPSRAVAPFGVPLPSGTKPGLTASEADSFNSRAWIKIDWSSWSQPQTNGNAITRYVIHCSGCSSSTFYAQPDETSKQFDESNGIVKGRNFTFTVAAQNDAGVSKDSPSVTGRPWTKAGPVQGLEVAQESPDDGIALIGWNPPADDGGLPIDHYAVQTENGAVHNFGSAPGPGGAPVDFGDNDPHSVRVWAVTSNNGRPVDGQESSLYDIRTWGKPGTPTASPTSSYDWYHISFRIYAGDANGKKVTGVQWSPNGVDGWTDHRSGDTYSAEVGEGGASSTVYVRTVSEASGDRQYSEVIPLSGTSMPKTLTVSFGRNDGCGSLGAGQQCTIYVEGRGFPHSEQPLGVSLAGPAAVDPSKCPVMNPGVKENFDVYVGGSNDCKFTGSGSVTVNASGVFASDSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI31</accession>
    <name>A0A0Q8VI31_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Response regulatory domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04130</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56996">
        <property type="protein sequence ID" value="KRC56996"/>
        <property type="gene ID" value="ASE19_04130"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="1"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="161" mass="16913" checksum="3F8EF868C81B9159" modified="2016-01-20" version="1">MLADDHELIRRGLAAVLSEQPDITVCGVAETGEGAVSQAREQSPDVVLLDLSMPGEGGLAAAAEILEEHLAAHAMIFTGHTAPELIRAAFAIGATGFVLKGTDAGEVVAAVRAVHRGEVWLSPEDAGVLAAELAVTAPVIPLRPRGSGRRRRARWVRFPRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJK3</accession>
    <name>A0A0Q8VJK3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13175</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895765.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53303">
        <property type="protein sequence ID" value="KRC53303"/>
        <property type="gene ID" value="ASE19_13175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040611">
        <property type="entry name" value="TetR_C_35"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18556">
        <property type="entry name" value="TetR_C_35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="22"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="205" mass="22099" checksum="47BEBFEC602989BF" modified="2016-01-20" version="1">MSILAGRPATEGVVGALASAAPSLRDRLLEAAVQIMTTAGWGRVTMARLADEVGVSRQTVYNEIGTKNDLAEAMVMRELDRFLAGVTQSFDENPDDLIAAIQHSARRVLKYAEDNALLHAVVSATHGADTELLPLLTTHSEYLLEGAKLVIGERVADYDVDLPEGRLEASIDMVVRLVLSHVMQPTATPARTADDIAWIAERVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJK4</accession>
    <name>A0A0Q8VJK4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">UDP-N-acetyl-D-glucosamine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_08055</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895450.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54018">
        <property type="protein sequence ID" value="KRC54018"/>
        <property type="gene ID" value="ASE19_08055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="295459at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016628">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017476">
        <property type="entry name" value="UDP-Glc/GDP-Man"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014027">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036220">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014026">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001732">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028359">
        <property type="entry name" value="UDP_ManNAc/GlcNAc_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00984">
        <property type="entry name" value="UDPG_MGDP_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03720">
        <property type="entry name" value="UDPG_MGDP_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03721">
        <property type="entry name" value="UDPG_MGDP_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500136">
        <property type="entry name" value="UDP_ManNAc_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000124">
        <property type="entry name" value="UDPglc_GDPman_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00984">
        <property type="entry name" value="UDPG_MGDP_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52413">
        <property type="entry name" value="SSF52413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03026">
        <property type="entry name" value="NDP-sugDHase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDPG_MGDP_dh_C" evidence="4">
        <location>
            <begin position="318"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR000124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="45017" checksum="2F38149623CDFADB" modified="2016-01-20" version="1">MPTLVVVGLGYVGLPLAQLATRRGVTTVGLDTSTRVTDQLNAGRSHVDDISDDEVATMVAQGFTATTDDAVLADADTVVVCVPTPLSSDGGPDLSMVTSAMTTIGRRLTAGTLVVLESTTYPGTTEELVRPLLEEASGLRAGEDFSLAFSPERVDPGNQTYTVENTPKIVGGTTPSCTKRAAEFYGALVDEVVLAKGTREAEMAKLLENTYRHVNIALVNEMVRFSHELDIDFWDVIGLASTKPFGFQAFWPGPGVGGHCIPIDPNYLSHRVQEKLGYPFRFVELAQEINATMPRYVVQRIQSLLNDEGRAVKGSTILLLGVTYKPNIADQRETPAQPLAEHLLQLGATVQYFDPYVEHWRVEGTTAVPDPVEAARTADLTVLVQVHDAFDVPELVGAAKRFFDLRGATTDGTERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJT7</accession>
    <name>A0A0Q8VJT7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">MFS transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13635</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897120.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53383">
        <property type="protein sequence ID" value="KRC53383"/>
        <property type="gene ID" value="ASE19_13635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1006128at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025508">
        <property type="entry name" value="DUF4395"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14340">
        <property type="entry name" value="DUF4395"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="126"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4395" evidence="2">
        <location>
            <begin position="20"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="173" mass="17902" checksum="F6DCD8F7CA1D5455" modified="2016-01-20" version="1">MTVTAPESLLRRTFSFPHPVNEKAARVVAGGVVLIAATALLLGRLVSTDWLWLSLVLALGFVARALTGPTLSPLGRLASAVVAPRLGEPKPVPGPPKRFAQVIGAVVTGLATVAVALGLTGLAEVLLVLIIVAAGLEAFLAFCLGCTIFGWLMRAGLIPEETCEACNNLALRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJU7</accession>
    <name>A0A0Q8VJU7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23400</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893914.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57708">
        <property type="protein sequence ID" value="KRC57708"/>
        <property type="gene ID" value="ASE19_23400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1819400at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009351">
        <property type="entry name" value="YcaQ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06224">
        <property type="entry name" value="HTH_42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="350" mass="38514" checksum="39FAFA0D4687A82A" modified="2016-01-20" version="1">MRFSKQRLNRTLLLRQHLLERVDRTPAQLVEHLVGLQAQEPMPPYLSLAARLTAFDPIGLSNQIESRELARVLSLRDTVHLHLPADALTLPVWAAPVRDRELRMSQTIGAAREVDRAAFAAAVRTVLADGPLPQRALSAALAERFPSYTGAQLGSVARVTEVLVQLPPRGCWKPTASTAVAYDFAERWLGAPLSSPDVPELVRRYLRAFGPATAADVTTWSGITRLAPVLKAMEDLVRHEDEDGKVLYDVEGSPVADEDTPAPVRMLGTYDNVWLSHAGRDRVTAPERRNAWMGVNGAQSNALFVDGWLEGLWRIDDGKVVLGEILRPLTKAEQAGLDEEIARVEALLAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLF7</accession>
    <name>A0A0Q8VLF7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Magnesium chelatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06070</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894066.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55008">
        <property type="protein sequence ID" value="KRC55008"/>
        <property type="gene ID" value="ASE19_06070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="325470at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011703">
        <property type="entry name" value="ATPase_AAA-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07726">
        <property type="entry name" value="AAA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_3" evidence="2">
        <location>
            <begin position="185"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="474" mass="51414" checksum="43ED9BBE051BA117" modified="2016-01-20" version="1">MTTSTPSTASLPGDLGALRASGHQQKSLRAELRANLLDLLARGEDPWPGLHGLEDTVIPQLERAIIAGHDVVLLGERGQGKTRLLRTLIGLMDEWTPVIEGSDLGEHPYEPITVASRRRAAELGDELPVAWRHRSERYAEKLATPDTSVADLIGDVDPMKVAEGRSLGDPETIHFGLIPRSHRGIVAINELPDLAERIQVAMLNVMEERDIQIRGYVLRLPLDVFVVASANPEDYTNRGRIITPLKDRFGAEIRTHYPRELAAEVAVIRQEADLLPEQVDVPDFLVDVLARFTRNLRESSAVDQRSGVSARFAIAGAETIAAAALRRATIHGEDRAVARVVDLETAVDVLGGKIEFESGEEGREGEILTHLLRTAIAETVREKFRGLDFALLVDAVEGGATITTGGAVTARDVLTGLPVLGESELYDQVCERVNGEGGGRTDGERAAAIELALEGLFLARKIGKDSDGSETIYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN95</accession>
    <name>A0A0Q8VN95_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA thioesterase II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22905</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the C/M/P thioester hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893045.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58916">
        <property type="protein sequence ID" value="KRC58916"/>
        <property type="gene ID" value="ASE19_22905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="990202at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047617">
        <property type="term" value="F:acyl-CoA hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006637">
        <property type="term" value="P:acyl-CoA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042171">
        <property type="entry name" value="Acyl-CoA_hotdog"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003703">
        <property type="entry name" value="Acyl_CoA_thio"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11066">
        <property type="entry name" value="PTHR11066"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="282" mass="31731" checksum="3353156B4DA4EF15" modified="2016-01-20" version="1">MGEATQKLVALLDLEQLDTDLFRGQQPETIRQRVYGGQVAAQALIAASRTVDEGFQVHSLHSYFLLPGDYNVPIIYDVERIRDGKSFATRRVLARQHGRPIYYQSLNFQRHEEGLEHEDVMPEVKPPEEGLNLMELMAERGTDDGLSKEWAALDVRWLGSSAYGLDKDPMHPAKAQVWIRVDGRLSDDPMEHLATFTYASDVSLLGATLAAHPDHGPQKVQMASLDHTIWFHRPFRADEWWLYDQWSPSASGGRGLALGRVFTQDGTLVATVAQEGLIRPSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNA3</accession>
    <name>A0A0Q8VNA3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Nudix hydrolase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_23330</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892501.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58986">
        <property type="protein sequence ID" value="KRC58986"/>
        <property type="gene ID" value="ASE19_23330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1345242at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="4">
        <location>
            <begin position="12"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC58986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="17721" checksum="0353F48B22A438F3" modified="2016-01-20" version="1">MPASPGGLPGEPTRRTVARVLPVSSEDRVLLLLGSDPAVPEVRYWFSVGGGVDPGETLAEAAARELREETGVEVAPDLLGEPFGTFEVTFAWDGRSYTNESTLFAVALEETPISFEGLDHLESQSIFDARWWTPEELDDDGGAVDPRLIDQMRAAIAHVRTPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPJ4</accession>
    <name>A0A0Q8VPJ4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">DUF202 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_04895</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54807">
        <property type="protein sequence ID" value="KRC54807"/>
        <property type="gene ID" value="ASE19_04895"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003807">
        <property type="entry name" value="DUF202"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02656">
        <property type="entry name" value="DUF202"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="91"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="domain" description="DUF202" evidence="6">
        <location>
            <begin position="11"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="112" mass="11509" checksum="4DE7A35831D0EF9A" modified="2016-01-20" version="1">MYGAGHEPEARDSLANERTFLAWVRTSLALVAGAVAVSSPALEFSVAARLLLSLGLVSVAGVALGVGWHRWTRTETALRTNSDLPGFTGGIVVLAAIGLLMAGALVSTLVGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPN2</accession>
    <name>A0A0Q8VPN2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05075</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894242.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54839">
        <property type="protein sequence ID" value="KRC54839"/>
        <property type="gene ID" value="ASE19_05075"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1597938at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010406">
        <property type="entry name" value="DUF1003"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41386">
        <property type="entry name" value="PTHR41386"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06210">
        <property type="entry name" value="DUF1003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="48"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="158"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="185" mass="21347" checksum="4BB33B73A17E5E44" modified="2016-01-20" version="1">MSTPRRTGERLDTPREESRQLIRRPTFNKDAFGVFAEQFARFMGTATFLIYMTLFVVVWIGWNLAAPDDLRWDDYPFIFLTLMLSLQASYAAPLILLAQNRQEARDRVVAEQDRQADARAHADMEFLAREMASLRMAVGEVATRDYIRSELRSLLSELDDRAEEREEDRAASHEDADDRSQPPTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPY4</accession>
    <name>A0A0Q8VPY4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Big_3_5 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00215</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896838.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59502">
        <property type="protein sequence ID" value="KRC59502"/>
        <property type="gene ID" value="ASE19_00215"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032109">
        <property type="entry name" value="Big_3_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16640">
        <property type="entry name" value="Big_3_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360259" description="Big_3_5 domain-containing protein" evidence="1">
        <location>
            <begin position="39"/>
            <end position="572"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="2">
        <location>
            <begin position="394"/>
            <end position="478"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="572" mass="57657" checksum="03DC8D0032525F8E" modified="2016-01-20" version="1">MSRMQSVVRRPHRLIAGAVAAATLGSIGLVAVEPAANAANPTGSIVEMFTEAGAPTYDPANRINGSGFWGHEGPNHDQGTYISSDLSAGEAAWLAKWEGVSDSSSFAVAFVPKSADGSAERPVVTAGESIGDAYDYFTVDGNNGMGGWTGSANPALDQVMVVSTLAEHEAWVADGGPAQIASSDDLVMHDALRPGVPVSAHPRGKSILNRWAAGQEMSLVFVQIDGTQGGLPIVHRGADGRAVAAWFNFTTQVDPEVGDAGHAGVATSGGYLITSALEAPDLSLGTTWSGTTATVTATLKGTGGATLTDATGTVQFSAKPKNNPTGSFTPVGSPVPVTASGTASYDVTGLVPGDAQQFQAVYTPDTAGATKYTAATSNNRTVTSSKAVLAVTGTLKAGYKQTLTAAITPIGATGTVTFFDGTTALGSAPVSASTGKAVATLALKVGARSLSATFAPSSAGYNAATSATVARTIAKATPTVTAVRTPTTVRKGVRAKLVITVKATGLVPTGTVTVTWDPATGATKILKGTLRAGKVTITLPAAVKGRTVVKVKYSGSSTVATASKALPAYTVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQC3</accession>
    <name>A0A0Q8VQC3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PEP-utilizers domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00955</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896717.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59624">
        <property type="protein sequence ID" value="KRC59624"/>
        <property type="gene ID" value="ASE19_00955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="997616at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008986">
        <property type="term" value="F:pyruvate, water dikinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006090">
        <property type="term" value="P:pyruvate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008279">
        <property type="entry name" value="PEP-util_enz_mobile_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006319">
        <property type="entry name" value="PEP_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036637">
        <property type="entry name" value="Phosphohistidine_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43030">
        <property type="entry name" value="PTHR43030"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00391">
        <property type="entry name" value="PEP-utilizers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52009">
        <property type="entry name" value="SSF52009"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PEP-utilizers" evidence="1">
        <location>
            <begin position="504"/>
            <end position="575"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="581" mass="62090" checksum="FD5F3BFC19BD2F70" modified="2016-01-20" version="1">MNTCLRGHIEIGGAMGAAATVEVKGRPFEPPGKGPWELESTHGCRPMTRVTQIAFLGGFARGFGEGTARYGVLLDHLEPAFVQSFLYVQPMAVGAPAGAMGPPPKPVLQVLSRLHPAMRRRHRAAAAAMEEKLWRRDLETWDRVDKPAAVAAHRAIQDVDVAGLSDAELADHVDRCAEHTTQSTYLHHKYTVTACLPVGDFLAGATAWTGATVGELMVLLCGRSEISRGFAATELDAAAKKIAASEQARSLLARSEAPAGVLEELAAHPEVGVEVSAYLEAVRWRSVGYDVGDQVAGELPEVLVESLRTALAGSRASSPDDDGALAVLRDRVPAAHREDFDDRLAEVRLLYRIRDERGVYSDGWATGLARRALLEAGRRLVAVGRLDVAEHAVELDPTEARALLLGGGGPDAAEVADRFEWRTTTSTSDAPQFLRALPAPPPPSAWLPARARRTGEAMNVFLGALFDVPDVPNSATVVSGLSVNEGVYEGTARLVDGAADFDRIKQGDVLVTRMTSPYFNVVLPMLGAIVTDRGGQLCHAAIVAREYGIPGIVGTRDATRTIPDGARVRVDGTTGEVRLLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQS8</accession>
    <name>A0A0Q8VQS8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 9">tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase</fullName>
            <ecNumber evidence="8 9">2.8.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">tRNA-i(6)A37 methylthiotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">miaB</name>
        <name evidence="14" type="ORF">ASE19_01135</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>[sulfur carrier]-SH + AH2 + N(6)-dimethylallyladenosine(37) in tRNA + 2 S-adenosyl-L-methionine = 2-methylsulfanyl-N(6)-dimethylallyladenosine(37) in tRNA + 5'-deoxyadenosine + [sulfur carrier]-H + A + 2 H(+) + L-methionine + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:37067"/>
            <dbReference type="Rhea" id="RHEA-COMP:10375"/>
            <dbReference type="Rhea" id="RHEA-COMP:10376"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="ChEBI" id="CHEBI:74415"/>
            <dbReference type="ChEBI" id="CHEBI:74417"/>
            <dbReference type="EC" id="2.8.4.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="9">Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the methylthiotransferase family. MiaB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.4.3" evidence="8 9"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896682.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59659">
        <property type="protein sequence ID" value="KRC59659"/>
        <property type="gene ID" value="ASE19_01135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="397139at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035596">
        <property type="term" value="F:methylthiotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01864">
        <property type="entry name" value="tRNA_metthiotr_MiaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005839">
        <property type="entry name" value="Methylthiotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020612">
        <property type="entry name" value="Methylthiotransferase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013848">
        <property type="entry name" value="Methylthiotransferase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038135">
        <property type="entry name" value="Methylthiotransferase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006463">
        <property type="entry name" value="MiaB_methiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002792">
        <property type="entry name" value="TRAM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00919">
        <property type="entry name" value="UPF0004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00273">
        <property type="entry name" value="(dimethylallyl)adenosine_tRNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00089">
        <property type="entry name" value="TIGR00089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51449">
        <property type="entry name" value="MTTASE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01278">
        <property type="entry name" value="MTTASE_RADICAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50926">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9" id="KW-0408">Iron</keyword>
    <keyword evidence="7 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 9 14" id="KW-0808">Transferase</keyword>
    <keyword evidence="9" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="MTTase N-terminal" evidence="12">
        <location>
            <begin position="11"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="13">
        <location>
            <begin position="156"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="TRAM" evidence="11">
        <location>
            <begin position="389"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="467"/>
            <end position="507"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="20"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="96"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00033765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC59659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="507" mass="55347" checksum="638CBBBBE87C68BB" modified="2016-01-20" version="1">MSTTAQPQQHRTYEVRTYGCQMNVHDSERLSGLLEDAGYTPFVAAPEGEQAAHPDVVVFNTCAVRENADNRLYGNLGHLAPVKASRPGMQIAVGGCMAQKDRDTVVKRAPWVDVVFGTHNIGSLPALLDRARSQQEAQVEILESLDVFPSTLPTKRESAYAAWVSVSVGCNNTCTFCIVPSLRGKEKDRRPGEILAEIEALVAEGVSEVTLLGQNVNAYGVEFGDREAFSKLLRACGEIEGLERVRFTSPHPAEFTDDVIAAMAETPNVMPSLHMPLQSGSSKVLKDMRRSYRQEKFLGIIQRVRAALPDAAITTDIIVGFPGETEEDFQETLKVVRESRFAGAFTFQYSKRPGTPAATLEDQVPQADVTDRYNRLVDLVNEIAWDENQKLVGRELELMVSEGEGRKDAATMRLSGRAPDNRLVHFEADFSQVDGAPRPGDMVTVEVTYAAPHHLVADGPVRALRRTRSGDAWERRTAEPAAAGPSVGLGMPSIGVPAPLPEAPACR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRD2</accession>
    <name>A0A0Q8VRD2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_01155</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59663">
        <property type="protein sequence ID" value="KRC59663"/>
        <property type="gene ID" value="ASE19_01155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="57"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="90"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="130"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="154"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="195"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="12"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="224" mass="24132" checksum="FB26F0AC914C140E" modified="2016-01-20" version="1">MLDNLDEFFKGFGYTLFLFLVCAVASMALGILLVAMRVGPIAVLRSLATVYVSVVRNTPLVLIFIFFHFAAPIIGINFKWVQVHVGSFDFTSAFATAFVALSLYTACFVCEGLRSGVNAVPMGQAEAARAIGLPFGGVMTQVVLPQAIRASVPPVASALIAMLKNTSVAAIFFLAEATAAMRGLTNDYSSQRIGIFLCFAIGYIVLVEIVSMISLSLERRWRVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VS90</accession>
    <name>A0A0Q8VS90_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">Beta-glucosidase</fullName>
            <ecNumber evidence="2 6">3.2.1.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_24095</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>Hydrolysis of terminal, non-reducing beta-D-glucosyl residues with release of beta-D-glucose.</text>
            <dbReference type="EC" id="3.2.1.21"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the glycosyl hydrolase 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.21" evidence="2 6"/>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894039.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57405">
        <property type="protein sequence ID" value="KRC57405"/>
        <property type="gene ID" value="ASE19_24095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="654705at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008422">
        <property type="term" value="F:beta-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102483">
        <property type="term" value="F:scopolin beta-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030245">
        <property type="term" value="P:cellulose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001360">
        <property type="entry name" value="Glyco_hydro_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017736">
        <property type="entry name" value="Glyco_hydro_1_beta-glucosidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033132">
        <property type="entry name" value="Glyco_hydro_1_N_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10353">
        <property type="entry name" value="PTHR10353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00232">
        <property type="entry name" value="Glyco_hydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00131">
        <property type="entry name" value="GLHYDRLASE1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03356">
        <property type="entry name" value="BGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00653">
        <property type="entry name" value="GLYCOSYL_HYDROL_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="410"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="4">
        <location>
            <position position="172"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="356"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="26"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="296"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="403"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR617736-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR617736-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC57405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="453" mass="50226" checksum="B47CD20105BBF9FE" modified="2016-01-20" version="1">MADEVRDLVDRLPTGFRFGTSTASYQIEGAVAEDGRGPSVWDTFTSEPGRIVDGSSGAVACDHYHRYAEDIELMRRLGADGYRFSIAWPRIQPSGSGPANVKGLDFYDRLVDGLLAAGIKPMATLFHWDLPQALEDDGGWLNRITIERFADYAAIVGERLADRVTDWVPVNEPNVVTLMGHAVGMHAPGKALMFDALPVGHHLLVAHGRAAIALRAAGASSVGCANNHAPIWPASDDPADVGAAKLFDALWNAHYLEGMLLGRYSDDLMMLLEDHVRDGDFATMRQPLDFYGVNYYNPMRIGAADETAELPFEFRDVLGYPLTDFGWPVVPDALREWLIMFRARLRAAVPPIVITESGCAYNMGPDEHGVVDDHERVDYHAAHLTAVAEAVERGVDVRGYYAWSLIDNFEWAEGYTQRFGLVHVDYDTQVRTPKRSFNWYADLVARHRAAHPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VT30</accession>
    <name>A0A0Q8VT30_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22735</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892600.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58883">
        <property type="protein sequence ID" value="KRC58883"/>
        <property type="gene ID" value="ASE19_22735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1928091at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013120">
        <property type="entry name" value="Far_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07993">
        <property type="entry name" value="NAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_4" evidence="2">
        <location>
            <begin position="5"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="645"/>
            <end position="665"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="681" mass="74026" checksum="AD5535E2AF86741F" modified="2016-01-20" version="1">MAYFVTGATGFIGRFLIPELIDHREGPIYVLCRASSLGRMDALIRQWGSDRVQPVVGDLGQPGLGVDEGWVTEHAGSIDHFFHLAAIYDITADDATNDAMNIEGTRNALTLAEALDAGCFHQVSSVAAAGDYHGRFDETMFEEGQPLPSPYHRTKYESEKIVRDEARVPWRVYRPAIVVGHSETGAMDKIDGPYYLFPLIKRLRDNLPSWLPLVGVDLGDTNVVPVDYVAKAMDHLGHLPDRDGEAFHLVNPEPQPVVDMVNAFCAAAGAPQFATPVGRNLTNAGPLALIPPRLRPLNLMTAVIRTAPAQLLLEQTIGRLGLPAEAIAHTSFPSVFDSRITEKALAGSGISVPPLETYVRTLWGYWEENLDDTTGRDPKARAALKDKTVVITGASSGIGKVVALKVAQAGGIPVLVARGKEKLEETKAVIESRGGQAHVFPCDLSDLEAIDRLCEQLVAELPSVDYVINNAGRSIRRSLKLSHDRFHDFERTMQLNYFGAIRLVMGLMPQLHAQRSGHIVNISSIGVQTNPPRFSAYVASKAALDAWSNVVSSEVVGHGITFTNVHMPLVRTPMIAPTKIYDKFPTISPAQAADTVIKAMVDKPHEINTALGTAGELAHTIAPRTAFRVLNLAYQVFPDSAAAKGQKPTSQAAAAAEEAPAENRRETEQMLLAQLFRGVHW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUE6</accession>
    <name>A0A0Q8VUE6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">AAA_31 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02670</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892761.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56743">
        <property type="protein sequence ID" value="KRC56743"/>
        <property type="gene ID" value="ASE19_02670"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_31" evidence="2">
        <location>
            <begin position="130"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="369"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="397" mass="42026" checksum="62959B7AB8643630" modified="2016-01-20" version="1">MPVIVEAEPASVATLLGSMPTGSHSVASVDRMHAWLDQHADEYVVVLGPSLGLDSALDAVEELRIKRPTVSAVLVRDQFDTDVLARSMHAGVRDVVVTGQDDKALTKAVERAHQLYQALRGPGGARQLGRVVTVFSPKGGVGKTTSSVNLALALADHGARKVCLVDLDLAFGDVAITMQLFPTHSIEQAVGAEDSVDLALLEGLLTRHEDSLTVLAAPAHPDVRERITPLLISRILRALRDGFDYIVVDTSPSFDDATLTALDETDECVIVATLDVPTLKNVKVALETMDMLSIARGHRHLLLNRADDAVGISVEKVESILGMPVSAQVGSAVDIAAATNSGTPIVTHKPLHPASQAYFHLASSVTGEPVSAPTPLTAESAADPGRSRGLFRRGRNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VV73</accession>
    <name>A0A0Q8VV73_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01720</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896576.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59763">
        <property type="protein sequence ID" value="KRC59763"/>
        <property type="gene ID" value="ASE19_01720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="39"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="2">
        <location>
            <begin position="119"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="344" mass="36663" checksum="C4E90A9A67A3D0C5" modified="2016-01-20" version="1">MRISRGPLVQVLTFVLTMGFLIAMVGIVFAKVRIQPSDEYSALFTDASGLTTGSDVRGNGVAVGTVKDIELADDGTARVSFTVAKTVSLTDSTQARIRYANLTGDRYLDLTPGSKGAGALAPGDTIPVGRTQPALDLDQFFQGFDPLMRALDADQVNELAKNVISVTQGEAGAVQSMLANVGSFTSRLAERDDLIGETITNLSEALALLNDHRGDLDQLVTGLSGLMKGYAEDRRTIGSSLASINVAAQDTADLLARIRPDLKANIDQIGVLAGHINNNTDDIRDALDQYPVVGSKIARLGSYGSFFNFYLCGVKLKIDLPGEDLDVYSPWVKDDTGRCGGIQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW51</accession>
    <name>A0A0Q8VW51_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01840</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896554.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59785">
        <property type="protein sequence ID" value="KRC59785"/>
        <property type="gene ID" value="ASE19_01840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2125463at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="201"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="239" mass="26709" checksum="9C6FF54573B55E27" modified="2016-01-20" version="1">MTYDPHSALAAIDDHLVPVLGFFSIVAVATFTYLVTSFRVAVRDRAYACALPAVGWFAVHDLGFVLQYDDWFHTYDHWWVKAWWVALVATSLIELALVGLVVRYGHAELAPHLSPRAFALGVTGAVLGMTALWVLVKRSIDDDLYLISFPITAFWAVPFGTALLLRRRTRRGQSVVQPACVAIIVAGFQGALWYVDDFFRSWEFVGFTLAAVAWSLANVWLVRTLPAWRPGEGASAYDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VX35</accession>
    <name>A0A0Q8VX35_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-ketoacyl-ACP reductase</fullName>
            <ecNumber evidence="1">1.1.1.100</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">fabG</name>
        <name evidence="1" type="ORF">ASE19_22915</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.100" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893043.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58992">
        <property type="protein sequence ID" value="KRC58992"/>
        <property type="gene ID" value="ASE19_22915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004316">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="444" mass="46532" checksum="F385D09BCF03A625" modified="2016-01-20" version="1">MTDKYQGFVSSPIGKLLVKNLGLPNPTKLDRYTAGDPLVNGTVLVGGRGRLIESLPGLLDVLGIASARAQEDGEKYKGLVFDATGIASVEELVELQGFFTPVLRSLKSCARVVVIGTPPGLVEGSEQIAQRALEGFTRSLGKEIGKGGTVQLVYVAEGYEDSVLSTLGFLLSPKSAYVSGQVVRIGAHEETHGSALADWTQPLAGKVAFVTGASRGIGEEIARVLHRDGAKIVGLDVPQAADDLVKVMNELDGDWLTLDITSVDAPQRIAHHLKEKHGGVDIVVHNAGVTMDKKLANQTPERFGKVLQINLEAPERITAELLAQDVINANGRIIGVASIAGIAGNLGQTSYAASKAGVIGFVDSLSEKLKDGITINAVAPGFIITQMTAAVPFATREVGQRLNAMSQGGLPVDVAETIAWYASPASTAVNGNVVRVCGQMMLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXL1</accession>
    <name>A0A0Q8VXL1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltransf_11 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00120</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896855.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59485">
        <property type="protein sequence ID" value="KRC59485"/>
        <property type="gene ID" value="ASE19_00120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1746174at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="44"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="250" mass="26305" checksum="32834585FDDCF991" modified="2016-01-20" version="1">MKEIRQAYDAAAPAWRVGPARLYGVLAQVLLDHAPVPVRGAVVLDAGAGTGVAGDAAWVRGAARVVDADLAPEILAPGGVAADLRRLPFRDRAFDLTVAAFSLGHLDDPVLGVRELRRVAPALLASAFAEGWTHPAKEVVDDVLAVHGYRAPDWYTAFKDGPERRAGAPDRLADLAVAAGHHDVRVSRVEVATGLSAPRDLVAWRLGMAHVAPFVATLPETAQQALRSEAERGLAGAPEVVVPMLVLTAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYD2</accession>
    <name>A0A0Q8VYD2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Dioxygenase</fullName>
            <ecNumber evidence="4">1.13.11.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_01595</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="4">Binds 1 Fe(2+) ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the carotenoid oxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.13.11.-" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896598.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59741">
        <property type="protein sequence ID" value="KRC59741"/>
        <property type="gene ID" value="ASE19_01595"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004294">
        <property type="entry name" value="Carotenoid_Oase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10543">
        <property type="entry name" value="PTHR10543"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03055">
        <property type="entry name" value="RPE65"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="497" mass="56288" checksum="AA699CEA4277F8CF" modified="2016-01-20" version="1">MSYDLPTENSLRGPFQPMRFEATVDECIVTHGEIPKDLAGGFYRVGPTWKRPTKQGTNPLLSMDGMVQAITFEDGVANFKNRWVRTPKYVAEAARRQSIFEWEDGGYGDWRDTAYGEVKRDIGNQGISRGVSNINIFPFQGEMLASSEQGGPPIAIDPITLETRGIVPWSPKLSSGLHTPAAYGDATFSAHPKWDPDTGVLYGWTYSDEAPYVVMHYVNPDGTVDTRELWDAPYNTVAHDIWLTPEWVVMPFQPFLVDKKRFEKERGIWEWDPELPIVIALIPRGDLHGEIRWIRTDLPAEYIMHTMSANVVGDELQLDGPIFNRPPFPFDQDFKEGDDIALFFSIARSNLGRWTINLKTGAARSEQLSDRPSELPKVDERFYGKGYEWGYSVGGVVKKGGMKMNNLTVTNMKTLSESTYQIRDNEPAAVLEATFAPRKIDSPEGDGYIIVPVSWWADKRGEYQIFDTDDVSAGPICRIELPFQMGWTPHGHWMDFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYL1</accession>
    <name>A0A0Q8VYL1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RNA polymerase subunit sigma-70</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_01340</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59821">
        <property type="protein sequence ID" value="KRC59821"/>
        <property type="gene ID" value="ASE19_01340"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007624">
        <property type="entry name" value="RNA_pol_sigma70_r3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04539">
        <property type="entry name" value="Sigma70_r3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000770">
        <property type="entry name" value="RNA_pol_sigma-SigE/K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="12"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r3" evidence="5">
        <location>
            <begin position="78"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4" evidence="7">
        <location>
            <begin position="161"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="266" mass="28838" checksum="DEFBB614B2B92B16" modified="2016-01-20" version="1">MPLVGHIVRETMGRVPSHVSRDDLTSAGLTALVLAARAYDAERGVPFDRYAATRIRGALLDELRSVDWASRSVRRRARDLAETRSRLANVLGRTPTVAEVAQAAGMSPDEVVANDDDVSRAQVLSLQGSATTPIEELVPTRAPSPEDLVEHAERLTYLREAIEELPERLRVVVQDYFFAERPMADIAAELGVTDSRISQMRAEALTLLRDALNHALEPSLVRSAGKAGGVAQRRRESYFAAVAARHADGARRGMAPSAVSPLDAVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMN8</accession>
    <name>A0A0Q8UMN8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycerophosphodiester phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20690</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896035.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46264">
        <property type="protein sequence ID" value="KRC46264"/>
        <property type="gene ID" value="ASE19_20690"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="SSF51695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GP-PDE" evidence="1">
        <location>
            <begin position="39"/>
            <end position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="374" mass="39634" checksum="D59AF123E011167B" modified="2016-01-20" version="1">MAATTSAVVALGAAAAPAGATPGDGYGQDHADRHAAGEPIVIAHRGASGYRPEHTLAAYRLAIRMGADYVEPDLVSTKDGVLVARHENEISGTTDVADHPEFAGRRTTKVIDGTSITGWFTEDFTLAELKTLRAKERLPQVRPDNTRYDGQFEIPTLEEVIALVKRESGRTGRRIGIAPETKHPTYFDSIGLSLEEPLVRTLRRNGLDRANAKVVIQSFETGNLRELATRTDVPLAQLVDGSGAPYDLKAAGSTTTYADLVKPAGLADIATYATWVAPAKNLILPRDASGAIGTPSTLVPDAHAAGLKVVTWTMRVENQFLPSNHRIGTDPNAKGDLAGEVAAFLDTGIDAVFSDNPDIAVAARDGWAAQQGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNT9</accession>
    <name>A0A0Q8UNT9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_20520</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896382.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46613">
        <property type="protein sequence ID" value="KRC46613"/>
        <property type="gene ID" value="ASE19_20520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1833499at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="309" mass="31886" checksum="7496811D3D060688" modified="2016-01-20" version="1">MGAMITVDRLTVSYGGFTAVDDVSFVAQPGRVTGFLGPNGAGKSTTMRVMVGLTPATHGHVTIGGLRYADIPNPGRHVGTLLDASAQHAGRTGREILTLGAQTMGLPKTRVDEMLALVGLTDSEAKRRLRNYSLGMKQRLGIAHALLGDPSVLILDEPANGLDPAGIRWMRGLLKGYADRGGTVLLSSHLLHEVEQIADEMILIGHGRIVAQGDRATLLASNGTGAATTLVTSLDNDALAAALGAAGHAVAAAGPGLRVTATAAQVGQAALDARVVLTDLRDGGQNLEDLFLELTSSTQRDVLPNGASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8US47</accession>
    <name>A0A0Q8US47_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21880</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46473">
        <property type="protein sequence ID" value="KRC46473"/>
        <property type="gene ID" value="ASE19_21880"/>
    </dbReference>
    <dbReference type="OrthoDB" id="407896at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="544" mass="60883" checksum="88E04DF8864A5868" modified="2016-01-20" version="1">MHVYLTAEETLGQVVDAATLARWFGQMSVEHAVRFAGHWMAKLEQPGSDRHDVDAAFLDYFAEPRRTVIQNVLRDPNRALVIPQALLFMARLALLHSPSQPWNELDGDKGPVLATMGLTDHLSDAIDDDEELVVTRVPGQVGRELIANQLFNAREDLRTMWATFQRCWREMPVDMAADPRMRTNLPTQYLESTGVDLGDLVLATGALASHAIVHGQATVPLTYLSALGWSAERLDAVLSLFAATPQQLRQMLNDEAEKYPSTWSTRTFDQFPVVRWADSLTVLSTDKVARRAAGLWPMYDILRELESNGSKVAIGQVRETVAYAYETWVVEAFAGIVGDERRLYREDECKRAYPKSKVADAVLDYPDGWVVVEITTPGLKAATAAGISDAAVVQDINNCVRKAQQLDTMIANLRRDERSLTHTHSNGPRRFYPVLVIADRFAANPILMTLLWERLEELRVLQGDDVAPLEVLELEDLDVLEGLIESEGPDLVTILREKEKSAFRGGTMQQYIVWGRGVNPEPPTRVRQRCMVWADLARKALAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU85</accession>
    <name>A0A0Q8UU85_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fatty acyl-CoA reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17415</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893119.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48714">
        <property type="protein sequence ID" value="KRC48714"/>
        <property type="gene ID" value="ASE19_17415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1582456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="300" mass="32455" checksum="69FFB164E1521A5E" modified="2016-01-20" version="1">MINLLRTPLTQTPRAAVARVVRTVTGGDSPLAGRTVLVTGASSGIGEATAHAAARRGATVLLAARREPELLRVQQAIRDEGGDAATYVVDMTDGDSVDALVARLLAEHGAVDYVVNNAGHSIRRSLELTHDRFHDFERMMAVNYFGPVRLTMGLVPAMRAQQFGHVVNIVTWGNQIRAPKFAPYIASKTALDVFGRILGRELFFDNVTCTNMRVAIVRTPMIGPTAAYDGHGETAEHCAERVVRALEDRPVTVDGAFGTFYAAFNVVAPRLSDLVMALGHRRVPDSAAARRTTPETVERS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUL1</accession>
    <name>A0A0Q8UUL1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18435</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893293.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48892">
        <property type="protein sequence ID" value="KRC48892"/>
        <property type="gene ID" value="ASE19_18435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="189" mass="19934" checksum="4F95C964BBBF228C" modified="2016-01-20" version="1">MARWQPGARERLVVSAVELFADQGYDATTVAEITERAGVTKSTFFRHFPDKRELLSAGQALLSQLLAEGISAATAEATPLGAVAVGLQRASEAFGPMNREIAPQMKAAIASSAELQEREALKRIGLSVAMTEALVARGFAEPVAHLAAEMGVLAFKQGYAAWVDAHDGSDFGPHALAALETLREASSAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUU2</accession>
    <name>A0A0Q8UUU2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 4">Imidazolonepropionase</fullName>
            <ecNumber evidence="1 4">3.5.2.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Imidazolone-5-propionate hydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">hutI</name>
        <name evidence="6" type="ORF">ASE19_18810</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the hydrolytic cleavage of the carbon-nitrogen bond in imidazolone-5-propanoate to yield N-formimidoyl-L-glutamate. It is the third step in the universal histidine degradation pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>4-imidazolone-5-propanoate + H2O = N-formimidoyl-L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:23660"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58928"/>
            <dbReference type="ChEBI" id="CHEBI:77893"/>
            <dbReference type="EC" id="3.5.2.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <cofactor evidence="4">
            <name>Fe(3+)</name>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
        </cofactor>
        <text evidence="4">Binds 1 zinc or iron ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid degradation; L-histidine degradation into L-glutamate; N-formimidoyl-L-glutamate from L-histidine: step 3/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the metallo-dependent hydrolases superfamily. HutI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.7" evidence="1 4"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893356.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48954">
        <property type="protein sequence ID" value="KRC48954"/>
        <property type="gene ID" value="ASE19_18810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="785930at2"/>
    <dbReference type="UniPathway" id="UPA00379">
        <property type="reaction ID" value="UER00551"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050480">
        <property type="term" value="F:imidazolonepropionase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019556">
        <property type="term" value="P:histidine catabolic process to glutamate and formamide"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019557">
        <property type="term" value="P:histidine catabolic process to glutamate and formate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00372">
        <property type="entry name" value="HutI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013108">
        <property type="entry name" value="Amidohydro_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005920">
        <property type="entry name" value="HutI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42752">
        <property type="entry name" value="PTHR42752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07969">
        <property type="entry name" value="Amidohydro_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01224">
        <property type="entry name" value="hutI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0369">Histidine metabolism</keyword>
    <keyword evidence="4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Amidohydro_3" evidence="5">
        <location>
            <begin position="50"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="Amidohydro_3" evidence="5">
        <location>
            <begin position="90"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>4-imidazolone-5-propanoate</name>
            <dbReference type="ChEBI" id="CHEBI:77893"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>4-imidazolone-5-propanoate</name>
            <dbReference type="ChEBI" id="CHEBI:77893"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="224"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="227"/>
        </location>
        <ligand>
            <name>4-imidazolone-5-propanoate</name>
            <dbReference type="ChEBI" id="CHEBI:77893"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="298"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="300"/>
        </location>
        <ligand>
            <name>N-formimidoyl-L-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:58928"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="302"/>
        </location>
        <ligand>
            <name>N-formimidoyl-L-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:58928"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="303"/>
        </location>
        <ligand>
            <name>4-imidazolone-5-propanoate</name>
            <dbReference type="ChEBI" id="CHEBI:77893"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF07969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC48954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="384" mass="39813" checksum="3C5AD670D5F23CE9" modified="2016-01-20" version="1">MTSPTTLLTNIGELVTNDPELGLRADAALLLEDGVVAWVGSAADAPAADEVVDAAGRAVIPGFVDSHSHLVFAGDRAQEFRARMAGESYAAGGIRTTVAATRAASDEELAAGVARHVDEMRRQGTTTVEIKSGYGLSVDDESRSLRIARGFTDETTFLGAHVVPPEYADDPAGYVDLVTGPMLAAAAPYARWIDVFCEDGAFDADQARTILAAGAAAGLRGRLHANQLGEGPGVQLAAELGLTAVDHCTYLSDADVHALREAGTVATLLPGVEFSTRQPYPSGRRLIDAGVTVALASDCNPGSCYTSSLPFCIALAVREMGMTPAEAVWAATAGGAQALGRTDVGVLAPGKRADLVLLDAPSHLHLAYRPGVPIIARTWRAGVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUU9</accession>
    <name>A0A0Q8UUU9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19030</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893392.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48990">
        <property type="protein sequence ID" value="KRC48990"/>
        <property type="gene ID" value="ASE19_19030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1999091at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024006">
        <property type="entry name" value="CHP04089"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023833">
        <property type="entry name" value="Signal_peptide_camelysin"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04088">
        <property type="entry name" value="cognate_SipW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04089">
        <property type="entry name" value="exp_by_SipW_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359450" evidence="1">
        <location>
            <begin position="27"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="177" mass="18214" checksum="792B43B4461B8E57" modified="2016-01-20" version="1">MKKTTKGALAAGSAAVLLMGGAGTLAFWNANTDVDGVAVTAGELKIINDNCVDADWVFDSGEDEADKVYAAGDLIVPGDELTKTCTFEIQATGEHLRANLDVTEPSLSGALAPNLTLVDTYQVGGVDLVDGDITEDNDGDVVTANISVTFNGSSTNATQTLAGALSDFTLSLTQDHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV05</accession>
    <name>A0A0Q8UV05_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18675</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893848.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48932">
        <property type="protein sequence ID" value="KRC48932"/>
        <property type="gene ID" value="ASE19_18675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1873445at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="65" mass="7220" checksum="14F9E5607EC31F08" modified="2016-01-20" version="1">MTRLHVDWTRCDGHGACTELLAGILEQDEWGYPRPLSGEREPQVEARSARRAVAACPLMALSLVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV75</accession>
    <name>A0A0Q8UV75_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">WYL domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895995.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46224">
        <property type="protein sequence ID" value="KRC46224"/>
        <property type="gene ID" value="ASE19_20435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1103754at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026881">
        <property type="entry name" value="WYL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13280">
        <property type="entry name" value="WYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="WYL" evidence="1">
        <location>
            <begin position="156"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="329" mass="36000" checksum="B3707157C111022E" modified="2016-01-20" version="1">MSTPKYVQRFARLPAVFERLQRHPEGLSLEILAADFDTTVAALREELLAFYTADIGGRWLLTRPEVLEFLGPDGDTEDPGTAGIVRIVAEVPADIGVEYVDAGELGLAYTAARALLETEPDNVELTEAIDVLTETMFGPSAVGASTPAVRSWNRLLPVFRKALAEQTAVRIVYSRAWHPGVTEREIEPYQLVQTRRGWEVDAGPADADGRLRTFLLSNIRSAEAVERTFDRPDDVAELLAAQRATTRVRVLLPQSARWAADFYAEEVTLVEDDETDVVVDLDLLPPVDGRVGRLLLAAGPLATVIDPPHLDSAGVVAAEELMMHHSAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVB3</accession>
    <name>A0A0Q8UVB3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_20650</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896027.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46256">
        <property type="protein sequence ID" value="KRC46256"/>
        <property type="gene ID" value="ASE19_20650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="626204at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="61"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="85"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="110"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="143"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="172"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="205"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="236"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="276"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="303"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="338"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="362"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="404"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="460"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="19"/>
            <end position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="493" mass="49574" checksum="79946E75E051A5B9" modified="2016-01-20" version="1">MTAVLPTPAPTTTRRRWAGLAVLAASLLVVVMDMTVLNVALPELTADLEAGALAQLWMVDVYSLVLAGLLVPVAALADRWGRRRMLLTGFAIFAFASLAALVARSAGDVIAIRALLGIGGAMIMPATLSLIRALFPDARERAFALGLWAATAAIGGAVGPIVGGALLSAFSWHAAFLVNVPLMVVALVAGRALLPESRSERPGRVDAAGVLLSVGGMVAAVYGVKHLGKEGVDLTALLALAAGALLLAAFVRRCLRQDEPMLAVGLFANPVFRAGVLTALVSSTVMIALLFVGSQWLQLVQGWSPLVAGVALLPMALGGLVGPPLAPAVAARLGARNVIVAGLVVLAAGLLVLWLLPRPLPYAGVAIALLLVGFGTAALGLASALIMGAAPVHQAGSAAAVEEMSYEVGGVLGVAVLGSLAGLVYRGGLPAGAAPEAVESVAGALGTPVEAAALASYTDAFGVVGLAGALVTMVVAILVWRGLPVDVDVSGGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UX71</accession>
    <name>A0A0Q8UX71_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21460</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896171.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46401">
        <property type="protein sequence ID" value="KRC46401"/>
        <property type="gene ID" value="ASE19_21460"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032109">
        <property type="entry name" value="Big_3_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008964">
        <property type="entry name" value="Invasin/intimin_cell_adhesion"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16640">
        <property type="entry name" value="Big_3_5"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49373">
        <property type="entry name" value="SSF49373"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359507" evidence="1">
        <location>
            <begin position="25"/>
            <end position="1264"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="2">
        <location>
            <begin position="489"/>
            <end position="573"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="2">
        <location>
            <begin position="587"/>
            <end position="673"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="2">
        <location>
            <begin position="684"/>
            <end position="772"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="2">
        <location>
            <begin position="781"/>
            <end position="866"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="2">
        <location>
            <begin position="882"/>
            <end position="966"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="2">
        <location>
            <begin position="979"/>
            <end position="1056"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="2">
        <location>
            <begin position="1078"/>
            <end position="1168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1264" mass="124935" checksum="D98EE26D84A05FB3" modified="2016-01-20" version="1">MAWLSVLATVVATLVASGGSPARAVQATGDEVPAWTTGWSWTYATVFNYTADGTNVTINENVTYTVAGVEDYQGQPAYKLNLTGTITGGNGTAAVDGVGNATLSNFSGTVTGTRFMRRSDLALLKETQAQALAAKAQVSIISANITANINLSMDPRRGWRLIQFPTEAGNSWINDTTVDYTGGFSYDAGSLGGTGSDSFDGNFSFAGPTTVANESIAVPAGTVNTRRSREQSADGSTRATMWYSPIHRNAGRLLLEIPLDGGSLTLDQKLASASTPAPSTTLTSGITPSLTCAGGDITIAGKLSSGAAGVPVAIALDKSPVTAGASATTSTTTTAGGNYTATLQAPSESDGYGRDGVRGSWGVVVTAGGAASTATVLVTPKNCSALTYTGDVSAAQGTNATVSATLVDKAGGSVVGKTITFALSGGATTTGTTDASGVASASIAVAGPPRSATITASYAGSASLEAASAQSAFTVGAITTSTTVSADPSVVTIGDPVRFHAHVTPSHGGNPGGTVQFRVNGSDFGAAVALTDGEATSAALSTLGLGDHTVVAVYNGTSDHVGSTSAAVTFRVREPLRPTTTASTVDPSSAVFGQPVTLGATVSTATGTPTGDVVFTVDGNEVGRAAVAANGAASTTVTDLPVGSNPVVATYAGDDVFGPSSASPRTVTVSKAAVEVTLTASDDTTVTGEAVGLTATVAVLSPGGGTPDGTVQLLVDGNATGAPVALTNGSASFAPLTSLTAGSHTLAAAYSGSARYLTDSDQVQQQVTQADTAVALVANPSPSLQDQEVRFTATVAATSPGSGSPTGTVTFFAGSDSIGSAPLSGGSAVLEVSDLAPGSYQVTARYAGDDDYRSSESSPISHTVIEGSAVVETTTTLTSSANPSTYGELITFRAQVAAGDGTPVGTVQFSVDGQDFGDPVAVGSDGVAESATLASPDPGDHTVIAAFTPQPGFSGSGDILTQTVRAAGVDVDLTSTDADAQVGDEVRFHAAVSSQVTGTGVPTGFVQFSVDGQPVGDAVELVDGEASSPAVDDLTPGAHTVTALYSGDVHFAPALAEIGQSVSKVATTTNLTLSSGVTTYGDNLRLTARVQPATGDLGVPTGTVTFYADGQAIGSVPVAPVAGGSAEASLDTAALTAGAHQLKAVYNGSPTHSGSTSTVRSVTVAKRATAVKAEAAVVSLTPLGLPLGQLRVTVTAGGSPLAGVPVEFKVGANVVCVAPTNAVGVATCNAASQLVALVLNAGYTASFLGDANHLSSTARGAILK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXN1</accession>
    <name>A0A0Q8UXN1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_15485</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893490.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50021">
        <property type="protein sequence ID" value="KRC50021"/>
        <property type="gene ID" value="ASE19_15485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="4">
        <location>
            <begin position="6"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="3">
        <location>
            <begin position="193"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="327" mass="33917" checksum="E91022E150191658" modified="2016-01-20" version="1">MEFALSEEQAELAATVRSLLEKRADSAAVRAASTSASGHDVALWATLCEQIGVAALAVPEEYDGVGATFFETAVVLEELGRSLAPSPLLATTIATHALLAGGTEEAKRHLLPRIAAGEVATLVTGAAPVLDGDRASIVLAVLGDELVEVHDAPATWVESMDQSVRLAQLDLAVATTSPLGDGTAAGARAELVGAASVAALAVGLADRALQMTVAYSKERVQFGRAIGSFQALKHRMADVFARTELARSASWAASYALAEGADDADFLTRAAASYAIETAQLAASECVQLHGGIAITWEHDAHLVFKRAHALGQLFGAPHRHRAAVAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXU4</accession>
    <name>A0A0Q8UXU4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Chaperonin GroEL</fullName>
            <ecNumber evidence="9">5.6.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">60 kDa chaperonin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Chaperonin-60</fullName>
            <shortName evidence="9">Cpn60</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9 12" type="primary">groEL</name>
        <name evidence="9" type="synonym">groL</name>
        <name evidence="12" type="ORF">ASE19_22510</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 11">Together with its co-chaperonin GroES, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9 11">Forms a cylinder of 14 subunits composed of two heptameric rings stacked back-to-back. Interacts with the co-chaperonin GroES.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell surface</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Secreted</location>
            <location evidence="8">Capsule</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Secreted</location>
            <location evidence="1">Cell wall</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9 10">Belongs to the chaperonin (HSP60) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.1.7" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896346.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46577">
        <property type="protein sequence ID" value="KRC46577"/>
        <property type="gene ID" value="ASE19_22510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="265347at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042603">
        <property type="term" value="C:capsule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009986">
        <property type="term" value="C:cell surface"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03344">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.7.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00600">
        <property type="entry name" value="CH60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018370">
        <property type="entry name" value="Chaperonin_Cpn60_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001844">
        <property type="entry name" value="Cpn60/GroEL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002423">
        <property type="entry name" value="Cpn60/GroEL/TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027409">
        <property type="entry name" value="GroEL-like_apical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027413">
        <property type="entry name" value="GROEL-like_equatorial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027410">
        <property type="entry name" value="TCP-1-like_intermed_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00118">
        <property type="entry name" value="Cpn60_TCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00298">
        <property type="entry name" value="CHAPERONIN60"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48592">
        <property type="entry name" value="SSF48592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52029">
        <property type="entry name" value="SSF52029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54849">
        <property type="entry name" value="SSF54849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02348">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00296">
        <property type="entry name" value="CHAPERONINS_CPN60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 9" id="KW-0143">Chaperone</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 9" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="29"/>
            <end position="32"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="86"/>
            <end position="90"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="414"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="478"/>
            <end position="480"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="494"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025702"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC46577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="542" mass="56544" checksum="2BAA0CD432600880" modified="2016-01-20" version="1">MSKLIAFNEEARRGLERGMNTLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVKEGLRNVAAGANPMGLKRGIEAAVAAVSEQLLGMAKDVETREQIAATATISAGGDATVGDAIAEAMDKVGKEGVITVEESNTFGIDLELTEGMRFDKGYISAYFVTDPERMETVLEDAYVLIANSKISNVKDLLPLLEKVMQSGKPLVILAEDVDGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDIAILTGGQVISEEVGLKLESAGIELLGQARKVVITKDETTIVEGAGDQAQIEGRVNQIRAEIENSDSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKHRIEDAVRNAKAAVEEGILPGGGVALVQAGATAFDKLELEGDEATGANIVKVALSAPLKQIAINAGLEGGVVAEKVANLPAGQGLNAATGEYVDLLANGIIDPAKVTRSALQNAASIAALFLTTEAVVADKPEKAAAGGDPTGGMGGMDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY13</accession>
    <name>A0A0Q8UY13_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21830</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896410.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46641">
        <property type="protein sequence ID" value="KRC46641"/>
        <property type="gene ID" value="ASE19_21830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="182"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="213"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="247" mass="26315" checksum="652F7A9889A58783" modified="2016-01-20" version="1">MAILLVKVLWSAVRHPRGYWGAVRDVMFDALKLCWIPLTISTVAFGFGAPGLQGGNIYLLFGIPERLGSFFVMASVREFAPWINAMIVAGVVGAAMTADLGARRVREEIDAMEVLGVDPVRDLIVPRVIGVTLITGLLDLVALTFGVIGGYLASVPVLGASTGAFLANFYANATLPDLWGSVLKTTMFGLIIGVVCCYKGLNAKGGPIGVGRAVNQAVVISFAMIYITNFLFTAILLGLNPDMQVYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYA3</accession>
    <name>A0A0Q8UYA3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fur family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19670</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Fur family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46098">
        <property type="protein sequence ID" value="KRC46098"/>
        <property type="gene ID" value="ASE19_19670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1630127at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07153">
        <property type="entry name" value="Fur_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002481">
        <property type="entry name" value="FUR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043135">
        <property type="entry name" value="Fur_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33202">
        <property type="entry name" value="PTHR33202"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01475">
        <property type="entry name" value="FUR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="15481" checksum="E8A2FA776421CFA1" modified="2016-01-20" version="1">MADMHPPDFQQQLRDVALRVTRPRLAVLEAVHAHPHADTESVIAAARALLPDVSHQAVYDSLHTLTEAGLVRSIKPAGSVARYETRTGDNHHHVVCRSCGSIADVDCAVGHVPCLTASDSHGFVIDEAEVIYWGVCPECSVRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ13</accession>
    <name>A0A0Q8UZ13_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Molybdopterin molybdenumtransferase</fullName>
            <ecNumber evidence="7">2.10.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_19805</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>adenylyl-molybdopterin + H(+) + molybdate = AMP + H2O + Mo-molybdopterin</text>
            <dbReference type="Rhea" id="RHEA:35047"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:36264"/>
            <dbReference type="ChEBI" id="CHEBI:62727"/>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.10.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 7">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 7">Belongs to the MoeA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.10.1.1" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895895.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46119">
        <property type="protein sequence ID" value="KRC46119"/>
        <property type="gene ID" value="ASE19_19805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="651103at2"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061599">
        <property type="term" value="F:molybdopterin molybdotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032324">
        <property type="term" value="P:molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00887">
        <property type="entry name" value="MoeA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038987">
        <property type="entry name" value="MoeA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005111">
        <property type="entry name" value="MoeA_C_domain_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036688">
        <property type="entry name" value="MoeA_C_domain_IV_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005110">
        <property type="entry name" value="MoeA_linker/N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036135">
        <property type="entry name" value="MoeA_linker/N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10192">
        <property type="entry name" value="PTHR10192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03454">
        <property type="entry name" value="MoeA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03453">
        <property type="entry name" value="MoeA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="SSF53218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63867">
        <property type="entry name" value="SSF63867"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63882">
        <property type="entry name" value="SSF63882"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00177">
        <property type="entry name" value="molyb_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 7" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="6 7" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MoCF_biosynth" evidence="8">
        <location>
            <begin position="188"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="410" mass="41753" checksum="DE3EDDCFCD38FA50" modified="2016-01-20" version="1">MSTPLRSVAEHQQHVTFLLAPAGGPSAWPTETVPTAEARGRVLAEPVRASEPLPSFDNSGMDGYAVRAADVAGATDATPVTLPVEGDIPAGAPVGELAPGTTLRIMTGAPVPRGADAVVEVEVTDGGTETVTISASREAGSFVRPVGGDVAVGDEVLAAGALLGAAQLGVLAALGVAEVVVRRRPRVLVVSTGSELAEDPVPGSGQIRDANGALLAAAVEEAGADAVRRLWVADDVPSFLSLLDAETAGGQVDLVLTSGGVSAGAYEVVKDGLGPRGVEFVKVAMQPGMPQGSGLVGGTPVVCLPGNPVSALTSYEVFVRPALRAAFGHPRPHRPVVRATLTEALTPLRTKQQWRRARLDRDAGTVTPWGPPGSGFLGWFAGADALIDLSPGDEELAVGTTVEVWDLALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0A5</accession>
    <name>A0A0Q8V0A5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_21870</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896240.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46471">
        <property type="protein sequence ID" value="KRC46471"/>
        <property type="gene ID" value="ASE19_21870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="785253at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14659">
        <property type="entry name" value="Phage_int_SAM_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="5">
        <location>
            <begin position="61"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="4">
        <location>
            <begin position="163"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="391" mass="43444" checksum="54A92640CC26EDD4" modified="2016-01-20" version="1">MASIQKRVSDGRTAYRVRWRDPTGRQVSRQFPTLALARAHQSTIEADLLRGTYLDLSRGQMTLAEYAEEWLAVQTCGATTLERRVRNVRLHVLPMLGHHRLANIRPTLVQAWIRGRSEHLSPRTVRELMRLLSSILGAAVDDERIAKNPCKSASVRAPKPDDTPLVPWTPEQIGALRLELRDRYRLILTLATGLGLRQGEIFALGVEDVDFLRRVVTVRRQVIILHSRMYFSLPKGRKVRTVPLPESVANEIAAHLQAFPAKQVSLPMGGPEAPLETTHLILTSPTGKALNRNYVNPTVWKPALQRAGLPTTRDFMTHGGRHFYASLQLENGISPRALADYMGHKDPAFMMRVYTHLMPGAGAKAQAAVDGLFAKLISPGEGRGPAKVGIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1R9</accession>
    <name>A0A0Q8V1R9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alkanesulfonate monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896511.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51445">
        <property type="protein sequence ID" value="KRC51445"/>
        <property type="gene ID" value="ASE19_15290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="919913at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="386" mass="42244" checksum="5806318C69FE725D" modified="2016-01-20" version="1">MSLKFHWFLPTNGGDGRHVVGGGHGVNPGQAGRPADVAYLTQVARAAEDNGFEAALTPTGAWCEDAWLTTAMLSQTSERLKFLVAFRPGIVAPYLAAQMAGTFQNLSGGRLLLNVVTGGESHEQRMFGDFLDKEERYERCGEFLEIVRRLWAGETVDFTGKYLSVEAARLGQIPDPVPDIYFGGSSPAAGKVAAEHADVYLTWGEPPQAVAEKIAWIRELAAAEGRGPDHRPIRFGIRMHVITRDTSEEAWAEADRLLKGIDPAMIQQVQEGLRRSESEGQRRMLDLHSGRTDDLEIYPNVWAGVGLVRGGAGTALVGSHEEVADRIAEYAELGLDEFVLSAYPHLEGAYWFGEGVLPILAERGLWKHEGPERRHSTSVPFASVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V473</accession>
    <name>A0A0Q8V473_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Peroxiredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_17340</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893811.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49085">
        <property type="protein sequence ID" value="KRC49085"/>
        <property type="gene ID" value="ASE19_17340"/>
    </dbReference>
    <dbReference type="OrthoDB" id="892697at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024706">
        <property type="entry name" value="Peroxiredoxin_AhpC-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000239">
        <property type="entry name" value="AHPC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="1" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="4">
        <location>
            <begin position="1"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine sulfenic acid (-SOH) intermediate" evidence="3">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000239-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC49085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="153" mass="16748" checksum="45770ACBC17D8235" modified="2016-01-20" version="1">MALGGLAPDFTLRDQFGQDISLSSYRGKKAVALVFYPYAFSGVCTGEMGGIRARLDEFLTFDTEVLALSCDPVYALRAFSDSDGLNFALLSDFWPHGEVARAYGVLDERAGCPERSSYVVDKEGRLTWAVHHPKPEARSLDDLLVALHAAGDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5E0</accession>
    <name>A0A0Q8V5E0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PepX_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09505</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52661">
        <property type="protein sequence ID" value="KRC52661"/>
        <property type="gene ID" value="ASE19_09505"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008239">
        <property type="term" value="F:dipeptidyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005674">
        <property type="entry name" value="CocE/Ser_esterase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000383">
        <property type="entry name" value="Xaa-Pro-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013736">
        <property type="entry name" value="Xaa-Pro_dipept_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02129">
        <property type="entry name" value="Peptidase_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08530">
        <property type="entry name" value="PepX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00939">
        <property type="entry name" value="PepX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00976">
        <property type="entry name" value="NonD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359711" description="PepX_C domain-containing protein" evidence="1">
        <location>
            <begin position="30"/>
            <end position="572"/>
        </location>
    </feature>
    <feature type="domain" description="PepX_C" evidence="2">
        <location>
            <begin position="293"/>
            <end position="559"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="572" mass="59385" checksum="4AD378233A4BC430" modified="2016-01-20" version="1">MAPRTLTRLVLVLTIGTAGLVAAPHAALADDPSPVVVQQRFTTSDGVELQTTLTSTGPVAARPTVVEFSPYGRGSETLDVSADYNFLLVQVRGTGDSDGSFDALGPRTQEDVVEVLDWACHQPFSDGRLALNGFSASAIMLYNSWHQELPCVDAAILKSGTFELYRDLLVPGGVLNLLPGAGVLALIGAPALLQGPDRLQRDPASSLDVVGGLFTTGLSVLAHPTLDGWWQERGWRGDANDIPVLMINGFYDVESRGVFQAFRALRGDGAHLVMEGGHDGVPAGTDGGAGEAAAWLDHFVRGVDNGIEDSPRVSLTLAQGSRASYLAGSHVTVTADDWPVPGTQWAELALAPGRTLTTTPPATRSLASYLTLPSLPTMTDVPNIALLEAGGVNALTGALPLLAQTNLASIDGLTGQTFTTAPLASPADLAGPVALDVTLATTTPGSALWAVLSDVAPDGTSNPLTVGRLSTSHPGIVAARSLVDQEGRVVQPYGDYTHASPAAPGAFRRYQVELWPVGNRFGAGHRIRVQLVGTSLASPLALPALHTVRLGGADGARLRVPVLPGSALSLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5Q8</accession>
    <name>A0A0Q8V5Q8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphoserine aminotransferase</fullName>
            <ecNumber evidence="6">2.6.1.52</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Phosphohydroxythreonine aminotransferase</fullName>
            <shortName evidence="6">PSAT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">serC</name>
        <name evidence="8" type="ORF">ASE19_09625</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>2-oxoglutarate + 4-(phosphooxy)-L-threonine = (R)-3-hydroxy-2-oxo-4-phosphooxybutanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:16573"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58452"/>
            <dbReference type="ChEBI" id="CHEBI:58538"/>
            <dbReference type="EC" id="2.6.1.52"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 6">
            <text>2-oxoglutarate + O-phospho-L-serine = 3-phosphooxypyruvate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:14329"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:18110"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57524"/>
            <dbReference type="EC" id="2.6.1.52"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
        <text evidence="6">Binds 1 pyridoxal phosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 2/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cofactor biosynthesis; pyridoxine 5'-phosphate biosynthesis; pyridoxine 5'-phosphate from D-erythrose 4-phosphate: step 3/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 6">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.52" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894620.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52682">
        <property type="protein sequence ID" value="KRC52682"/>
        <property type="gene ID" value="ASE19_09625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="996960at2"/>
    <dbReference type="UniPathway" id="UPA00135">
        <property type="reaction ID" value="UER00197"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00244">
        <property type="reaction ID" value="UER00311"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004648">
        <property type="term" value="F:O-phospho-L-serine:2-oxoglutarate aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006564">
        <property type="term" value="P:L-serine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008615">
        <property type="term" value="P:pyridoxine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00160">
        <property type="entry name" value="SerC_aminotrans_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022278">
        <property type="entry name" value="Pser_aminoTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006272">
        <property type="entry name" value="Pser_aminoTfrase_mycobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000525">
        <property type="entry name" value="SerC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01366">
        <property type="entry name" value="serC_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 8" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-0664">Pyridoxine biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0718">Serine biosynthesis</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_5" evidence="7">
        <location>
            <begin position="164"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="6">
        <location>
            <begin position="79"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="6">
        <location>
            <begin position="247"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>L-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="149"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="6">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001871"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="373" mass="39807" checksum="5EA04D93EA83EF7C" modified="2016-01-20" version="1">MTDIQIPAELKPADGRFGAGPSKIQPSHLDALAATGDSLMGTSHRQAPVRNTVGRVLQGLADLFTLPDGYEIVVGNGGATAFWDIAAFGLVEKKSQHLTFGEFSSKFASSVKAAPWLDAPSVISADPGSRPVAVAEAGVDVYGWAHNETSTAVMAPVVRPEGIDEGALVLIDATSGAGGLPVDLTESDVYYFAPQKCFASDGGLWFGIFSPAAIERAERIAASDRYIPPFFDLKTAIDNSRLNQTYNTPSVATLFLMAEQLDWMNGQGGLKGMVERTTASSDALYGWAERTSYTTPYVADPSHRSLVIGTIDFDDAIDAAAIAKVLRANGIVDTEPYRKLGRNQLRIAMYPAIDPADIEALTRSIDYVVEQLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V647</accession>
    <name>A0A0Q8V647_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_10365</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894743.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52810">
        <property type="protein sequence ID" value="KRC52810"/>
        <property type="gene ID" value="ASE19_10365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="17"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="5">
        <location>
            <begin position="295"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="6">
        <location>
            <begin position="370"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="3">
        <location>
            <begin position="433"/>
            <end position="642"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="647" mass="70333" checksum="F29647ADFDD4E0F2" modified="2016-01-20" version="1">MWDVRGQVGGQVAHLPTVVIVDDSAELRAIVGARLRASGLFDVVGEGGDGGQALLLAHEHQPTLMLLDTSMPVLDGLECLPLVLAVSPDTKVVVFTGFESRDLADRARHLGAADFVEKSAPLEVLVERLWAQVPLEAQRAGEVGGRAGRPRGGLRLAQDQDDARLREQATLDEHLERYREVFDQAAIGMATMTLNGSIVRANRALVDMVQRPGLDLVGLDYGVLTRQHGDHLDEALARITEGDEDLVAFEHPIDGDGVVHTVRVTLTPIRDSKGAALYVFAQVQDVSAEVELRRSEEVFRQLVTAVKDYAIFMLDVDGTVASWNAGAQNIKGYPAAEIVGRHFRVFYPQEEQDAKHPEHNLELALRDGVYAEEGWRIRRDGSVFWAGVVITAIHDDAGRHRGFAKITRDQSEQRAHEEERRRALEQQAHLLAVTAHELRTPAAVVEGAVGLLRATGGAEDPETAGILDAMSSTVLRLQRLATDLRTAFDVQTEALALAPERMELRSALSAAADRAHAAHGGARIQVRVDQEVEVVADASRLGQALDNLLDNALRHGRAPVLLAGHRTGDGVRIVVSDAGHGVEPRLVDRLFERFAHAGPSAGTGLGLYLVREIVRLHGGEARYVPGDDDNRPAFVLELPATPQIPRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V692</accession>
    <name>A0A0Q8V692_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">HTH gntR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11045</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894866.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52933">
        <property type="protein sequence ID" value="KRC52933"/>
        <property type="gene ID" value="ASE19_11045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1911275at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="19"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="233" mass="24996" checksum="47FAB5E4DC8BDF98" modified="2016-01-20" version="1">MSAVPAARKAFSALGVEHASTVSRVAAELRRAVFEGELESGTPLREIALAESLGVSRPTVREALTVLVAEGLATREPHRGVAVATPRADSVRDVCRARWVLEGAGVHAWTVADPARRQRVRDTLDAYTAAVRGGEASYEELNERHLSFHVSLVELTGSPRLVQMAEALMDELKLALAQVDRLHRNAHDEAEAHEGLVALLEAGDIDGPGGAAAFLRKHIDDAEVEVIEALGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V697</accession>
    <name>A0A0Q8V697_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NmrA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10915</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894842.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52910">
        <property type="protein sequence ID" value="KRC52910"/>
        <property type="gene ID" value="ASE19_10915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1616572at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008030">
        <property type="entry name" value="NmrA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05368">
        <property type="entry name" value="NmrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NmrA" evidence="1">
        <location>
            <begin position="39"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="26824" checksum="014936F4A6789355" modified="2016-01-20" version="1">MEVAILGGSGKTGRAVGAALARVGVATRPLGRAAFADLPSSLSAALAGADAVHVIAPNLHPDEPGLVAAALAAARAAGIARVTYHSVASPYVPAMPHHLGKAVAEDLVRRSGLDWTLLQPCAYAQNLLPAARAAATTGHLDVPYAVDRPFGLVDLDDVAEATAVVLTRPGHAGATYELGGPALVTVAELAAALGATARRIEPAADEHPWLRAMFAYYDDHGLPTGGVPLAALLGRSPRPAADVLAGRSCQPCPPALAVPDDERP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6M8</accession>
    <name>A0A0Q8V6M8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Malyl-CoA thiolesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_10685</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894801.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52868">
        <property type="protein sequence ID" value="KRC52868"/>
        <property type="gene ID" value="ASE19_10685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1107373at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005000">
        <property type="entry name" value="Aldolase/citrate-lyase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011206">
        <property type="entry name" value="Citrate_lyase_beta/mcl1/mcl2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03328">
        <property type="entry name" value="HpcH_HpaI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015582">
        <property type="entry name" value="Cit_lyase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HpcH_HpaI" evidence="5">
        <location>
            <begin position="8"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 4">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="154"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR015582-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR015582-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="287" mass="30259" checksum="1CF2DFE0B36B9EE7" modified="2016-01-20" version="1">MTEFKPLRSVLYMPSSNERALEKAKTLPADAIIFDLEDAVAPDAKVAARACAAAAVQSGEYGRRHLVIRVNGIGTEWHDDDIKAAAAAGPDVVLVPKVNSADEVRTLVAALEAAGAPARTTLWAMVETPIGMLNALSIATASERLTGFVMGTNDLVKELYAEHVPGRQPVITGLGLALLAARAAGIVIIDGVYNDVKNIDGFLAEVEQGRQMGFDGKTLIHPGQVEGANTGFAPSEQAVEDARGLIQAWEDGKGSGVVTYNGKMVENLHVESAERTLSIHDAIQALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Q3</accession>
    <name>A0A0Q8V6Q3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AMP-dependent synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893641.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50173">
        <property type="protein sequence ID" value="KRC50173"/>
        <property type="gene ID" value="ASE19_16330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="164380at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="14"/>
            <end position="420"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="554" mass="59127" checksum="C3CF084E23C45FE0" modified="2016-01-20" version="1">MTDPLAVSSLCEAFQNSVARSGSQVALRAPGGEQELTWQEYGERVRRLAEGLASLGVGPEDTVGIMLANRPEFALVDTAALHLGAVPFSIYNTSSPEQIAYLFGNAGNKVVVTEQMFLPQVLTAGTGVETVVSIDGGEGVITLAELESRTLDGFDFEASWRAVGPDDVLTLIYTSGTTGPPKGVELTHGSMLAQLRGVQAVIPAHDGERSTSYLPSAHVADRWAGHYSPMVFSGTTTYVADPKAVVAALPEVRPTAWGGVPRVWEKIKAALEAKGVTDPAALPEDHRTAVRQLLGLDDVRYSVSGAAPIAPEVLEFFGALGVPICELWGMSEISCCGIINPPEDIRIGTVGKPIPGLEVRLADDGELLVRGPQLMRGYRNQPDKTAETIDADGWLHTGDVATIDEDGYVTIVDRKKELIINAGGKNMSPANIEQVVKASHPLIGQAVVVGDRRPFNVALLVLDPDVCAAYAEQAGLPDGSAAALAQDPKVQEQVATAVEEANARLSRIEQVKRYRILATDWLPGGDELTPTMKLKRRPIAEKYADVIEELYAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Q8</accession>
    <name>A0A0Q8V6Q8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893757.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50288">
        <property type="protein sequence ID" value="KRC50288"/>
        <property type="gene ID" value="ASE19_16975"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032875">
        <property type="entry name" value="Succ_CoA_lig_flav_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13380">
        <property type="entry name" value="CoA_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13607">
        <property type="entry name" value="Succ_CoA_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="14"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="886" mass="91076" checksum="BA428F94A72F9A2F" modified="2016-01-20" version="1">MTTADVLLSDGAVAEIRPLDRRDEASLHALHESVSDDSLRLRFFSCGRRAAHLYLDRLLASSDTLALVASVDGQLVALATAEPVAEATCEVAFLVADELAGRGLGTLLLEHLAARARDRGVRRFTALVLAENHRMLEVFADAGFTVTRSTTEGECELTMDTAVTAAVQEAADRREFASEARSLAPLVTPRSVAVYGARRDGTGIGAAVVTAIRRDGFTGELVAVHPHATTVLGVPARTSLGDGPPVDLAVIAVPVVGVLDALEDAAVGGARVAVVISSGFSEMGPEGARLQRELGRLARHRGIRLVGPNCLGVLDNAPDVHLNATFGLHAPGSGGLAVASQSGGVGIALMDLLARADVGVRSFVSLGNKVDVSGNDLLAAWYDDPGVTCAALYLESFGNARKFARFARRFSQRKPIVAMVGGRSVGGRRAGASHTAAAATPAVGVAALLAQSGVIAVHDAEELADTVTVLTREPLPLGATVAVLSNAGGLGVLAADAAQDAGLDVVAFSRPLRDEVQALVSQTAGSDNPVDAGAGADGDRVAAIADVVLASGEVDSVVVVLVATDTNDVAGALDALAGVRRRHPHQPVVAVALGVDDLPDRGVTTLRSIAAAVAALGRASTYARWRRTPVAPAPVADPERARAARDEACELISRGGAGGWVAPDAAAGVLRPYGLDLAGTVVAPADAPGVAEQIGFPVAVKVANADVVHRTERRLVATGLVSTAEVARAVQDLEHRVGVPCRVLVQPMASGVEMALGVVRDPVLGPLVMVAPGGVATDLADDRAFLVPPFDPGQFLRTLRGLRCWPLLDGFRGAAPVDVAALARTASALGQLAVEVPEVAEVDLNPVMVAEDGVRLVDVKVRLAAGETLDQPRQLRRSAAAVPDAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6S0</accession>
    <name>A0A0Q8V6S0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12145</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53125">
        <property type="protein sequence ID" value="KRC53125"/>
        <property type="gene ID" value="ASE19_12145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1904944at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="144" mass="15640" checksum="95DB130A1B2BCA89" modified="2016-01-20" version="1">MSDYRLAPPVMARFVGAYLVLLAVVLLAVTVAAVALDLDADLLVLVLGLGVLGLIGLAWWLRSRLVVVRLTEAGYQVRMIRAAGVSEARWSEVEDAVAAAPRDIECLVLRLRDGRSTTIPVQLVAADKDDLARDVRAHLDRATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6X7</accession>
    <name>A0A0Q8V6X7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uroporphyrinogen III synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12505</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895116.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53189">
        <property type="protein sequence ID" value="KRC53189"/>
        <property type="gene ID" value="ASE19_12505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1185397at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004852">
        <property type="term" value="F:uroporphyrinogen-III synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006780">
        <property type="term" value="P:uroporphyrinogen III biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06578">
        <property type="entry name" value="HemD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10090">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036108">
        <property type="entry name" value="4pyrrol_syn_uPrphyn_synt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003754">
        <property type="entry name" value="4pyrrol_synth_uPrphyn_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039793">
        <property type="entry name" value="UROS/Hem4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40082">
        <property type="entry name" value="PTHR40082"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02602">
        <property type="entry name" value="HEM4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69618">
        <property type="entry name" value="SSF69618"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="279"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="1">
        <location>
            <begin position="279"/>
            <end position="372"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="374" mass="39785" checksum="D274DA52FE3E900A" modified="2016-01-20" version="1">MTVPTSEQPLTGFRIGVTAARRAEEQISLLERRGAEVIHAPALSVDPNRIDEVGLLAATKDVLSQPVDIFVATTGIGLKSWFTAAERWGLLDDLVTHLGSAEILARGPKSVGALRRFGLRELWAPESEAFEDVLGHLRGRRLDGVRIVVQEHGQSLSMAAHALRRLGAEVTTVAVYRVEGAADPEPMFGLIEQIAERRVHAVTFTAAPAIAAMMDAAGSTGHRDELVTAFQADVVASCVGPVTAAAFEMWGVPSIYPERSRLAAMVKQLETELPSRAAGTSLEVAGHTLLLHGDDVLLDGVEVKLSPAPYAVLQALLVNPGTVVSRRDLLGALPSGTAGSEHAVEMAVARLRAALGTRCIQTVVKRGYRLAVTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Y6</accession>
    <name>A0A0Q8V6Y6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_12270</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895075.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53148">
        <property type="protein sequence ID" value="KRC53148"/>
        <property type="gene ID" value="ASE19_12270"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Protein kinase" evidence="8">
        <location>
            <begin position="10"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="277"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="355"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="368"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="564" mass="60590" checksum="B1EC3068D6500342" modified="2016-01-20" version="1">MSLPERLGRLRRVDRIGAGGFATVWLYHDDELDSPVAVKALADNWAQRQDVCDRFLEEARILRRADSDHVVRVYDIGAVDGTPYFVMSYADRGTVADLLQPGVPMPADRVVDLMAQAGDGIAVLHRHGVIHRDIKPQNLLLRSTPDGGERVLVADLGVAKAMLHASGLTQVVGTPSYMAPEQANGVGLDLRADVHALGAVAYHLLTGRLVREGGFSSLMQPELPAAPSLIADVAPAYDSVVLRALAVDPDDRWPDVPSFVAGLRWAERTAVQREALTGTAERRLGPPQAVPTQLPTQDRDEPAVTIAPERPAAPAAPATPPEPPRGRRILPLALLSLLVLLVTFGAAYGATRLLGGSDDGEPRSPSSAPSSSPTPTPSQTPLGEPEPDIDFPALQLPNGQEYDTHVVRTSGVAWTYPVPVGWVAYRLGAKNEDLGVLPDDEIDDVGQVRWRPAGEPLVGGFSVRLRALSTPIGVPATLAAKVVELEKLKDPDVYDQTADTVYYTYRDGNNRVRYNFFRWLPNDAGEAALEISVSGRTADKQGLADLLEAVTDGASVTTPKAKSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V754</accession>
    <name>A0A0Q8V754_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Twin-arginine translocation pathway signal</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12570</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895125.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53198">
        <property type="protein sequence ID" value="KRC53198"/>
        <property type="gene ID" value="ASE19_12570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="796397at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008557">
        <property type="entry name" value="PhoX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05787">
        <property type="entry name" value="DUF839"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5015782106" evidence="1">
        <location>
            <begin position="32"/>
            <end position="488"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="488" mass="51569" checksum="8FC184E9F87C9B97" modified="2016-01-20" version="1">MSSSSRRSVLAGGAAGVGFAVTGAMPSLAQATPNDNASDRAKERAGRGVVAFPPLQDDPAGLLALPAGFSYAVVTRAGVTRLDEGQLTPNAHDGTAVFTTGRGRYRLIQNHELKAGSALGVPHIEGTVYDEGAIDAGGCTVISTDSKGRNLGEYVGISGTSTNCAGGPTPWGTWLTCEETEDRAGKSWSGNGKSGTYLKDHGYVFEVFHDGRANAKPIKAFGRYAHEALAIDKARKHVFLSEDASGPNGLFYRWTAPAGFEMGPNLADRLADDAGVLAAMQIIMPDGSVLPDVAYLTSAQMGLPFPVQWKQVPDRDAKTTSVRKQFTDGEVTRGKKFEGVWGTDEGVYVVNSFAFSSSDLPADAVPHDGMVWFYNYKAETIQLVAYFPHQATAASGAAAKYDDLTFDGPDNVTVTPWGSLVLAEDGAGASQVLSATPYGPAQAIARNQLNDSEFTGPTFSEDGKVLFVNMQTPGLTFAITGPWEKYLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7G5</accession>
    <name>A0A0Q8V7G5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NodB homology domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11910</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895017.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53087">
        <property type="protein sequence ID" value="KRC53087"/>
        <property type="gene ID" value="ASE19_11910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1701876at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10938">
        <property type="entry name" value="CE4_HpPgdA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002509">
        <property type="entry name" value="NODB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037950">
        <property type="entry name" value="PgdA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01522">
        <property type="entry name" value="Polysacc_deac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51677">
        <property type="entry name" value="NODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NodB homology" evidence="1">
        <location>
            <begin position="43"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="33243" checksum="E36C5EA6544D2E8C" modified="2016-01-20" version="1">MGVSRRAEVVPVQLPEDKRLAVCLSPDFDAQSVWIGTFRSRSQTNLSRGEFGAEVGAPRLLEVFRTFGITTTWCVPTHTMKTFPHAVEAVRGDGHEIGAHGVFHEYIPSLELDEERRLLELQVALHDSLLGQRPRGYRSPALDITDHTLDLLAEFGFDWDSSLMGRDFEPYRPRVVTGIDLEEGNTFGPPSSVLEMPVSWILDDFPELESFKGSALMQSNETVLRRWIDSFDFAYERCPGGVMTWTLHPQTIGRAHNILMLERFLDHVTKHADVWFPTLSEVYDTWTDGPDPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V880</accession>
    <name>A0A0Q8V880_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Saccharopine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13310</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895789.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53327">
        <property type="protein sequence ID" value="KRC53327"/>
        <property type="gene ID" value="ASE19_13310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1006830at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045982">
        <property type="entry name" value="DUF5938"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19362">
        <property type="entry name" value="DUF5938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13460">
        <property type="entry name" value="NAD_binding_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="1">
        <location>
            <begin position="10"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5938" evidence="2">
        <location>
            <begin position="140"/>
            <end position="372"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="376" mass="40443" checksum="86BF224D631987BF" modified="2016-01-20" version="1">MAKYPVVVYGASGYTGMLVMDWLIDQDIAFTAVGRDAGRIKEMMAERVVRLESATYEIVEAEHDVAALAAAFTGAKVVCNTVGPFGKFGPVAIEAALRAGCHHLDTTGEQGYTMAIREQFGEEYAEAGLVLCPSLSYMHTIAQIAAELTLETPGIDSLETATIVRGPREGSGVTVGSTASIFESFRHPQHHLWDNRLVAWGMTDHFEISVPELLRPALALPWGGTSLPVFYQDDSRVRFCSSLTSFYDNPAMTLVLAVAEQWEAELQHLPVESQEAAIAQIVASTTPSMPPRERTTLNRSIDIAIGRGQLAGVRASVSSVAPYITTGALQAAAAMKLVEGETDAVGFTSGCKAFGHRYLLGFLEQRGLARASVSEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V881</accession>
    <name>A0A0Q8V881_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_09840</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53605">
        <property type="protein sequence ID" value="KRC53605"/>
        <property type="gene ID" value="ASE19_09840"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007300">
        <property type="entry name" value="CidB/LrgB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30249">
        <property type="entry name" value="PTHR30249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04172">
        <property type="entry name" value="LrgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="37"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="67"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="126"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="182"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="207" mass="21176" checksum="AED3C2DF88B5DCCF" modified="2016-01-20" version="1">MQQRSGGHALAQPVLVAIVVTGLAITVLDVDYPEYRSGVELIAFWLGPATVALAVPLHRQADRLKGFVVPMLVAVVVGAVVSITSAVLLARALGADEALEKTLATKAATTPVAIALTDALGGIPPLAAVFAIIIGILSAITAPAVLDLLRIRDRRARGLAVGAVSHGIGASRMLREDETEGAFAGLAMGLSALAISLLVPVLALVLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8A6</accession>
    <name>A0A0Q8V8A6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Chromosome partitioning protein ParB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13990</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ParB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897057.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53446">
        <property type="protein sequence ID" value="KRC53446"/>
        <property type="gene ID" value="ASE19_13990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="653368at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041468">
        <property type="entry name" value="HTH_ParB/Spo0J"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004437">
        <property type="entry name" value="ParB/RepB/Spo0J"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003115">
        <property type="entry name" value="ParB/Sulfiredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036086">
        <property type="entry name" value="ParB/Sulfiredoxin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17762">
        <property type="entry name" value="HTH_ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02195">
        <property type="entry name" value="ParBc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00470">
        <property type="entry name" value="ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110849">
        <property type="entry name" value="SSF110849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00180">
        <property type="entry name" value="parB_part"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ParB" evidence="4">
        <location>
            <begin position="85"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="49"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="349" mass="37415" checksum="55831C7044873F5A" modified="2016-01-20" version="1">MNANAPRRGLGRGLGSLIPTAPPPGTPTPGSGPATDVVVNPDDRNSDLRAGAPSSTSAGLGSTGSGTGAQIEDSGLTPVEGAFFAELPVDQVRPNAVNPRTVFDEEAMAELVHSIKEVGLLQPVVVRRTGTDSYELVMGERRWRATQAAGLTTIPAIVRETEDDDMLRDALLENLHRSNLNPLEEANAYQQLLEDFGCTHEELAQRIGRSRPQISNTLRLLKLSPAVQRRVAAGVLSAGHARALLGVPDAEQQDRLAQRVVAEQISVRGLEEIIAVGDGTGTPKRTTRAKPKAPGLTELSDRLGDRLETRVKIDLGKAKGKISIEFANTGDLQRIVDLIDPRNRNDRII</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8Q6</accession>
    <name>A0A0Q8V8Q6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_13675</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CdaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897112.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53676">
        <property type="protein sequence ID" value="KRC53676"/>
        <property type="gene ID" value="ASE19_13675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1439158at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041522">
        <property type="entry name" value="CdaR_GGDEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17853">
        <property type="entry name" value="GGDEF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF_2" evidence="3">
        <location>
            <begin position="188"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_30" evidence="2">
        <location>
            <begin position="344"/>
            <end position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="406" mass="44078" checksum="7DEDBF07907C45C2" modified="2016-01-20" version="1">MSWDDPSARTRELMRQAAELALAAPDAWVVPVHEATLSARPIAAIAADPALADALRRANFDNLLAWASANVRAPGDRVPPNVSTVQLDVARDLVRRGLDEAALDAYRTGQNVAWQSWMQICFGLTREVDELEELLVVSAASISTFVDGTIAAVASRMDAERDELTRGSQAERRDLVSLLLEGAPVSRSRAEAVLAHRLDGDHTAAVVWATDPDADLGRLERAAEALMRACGARQRLTVVAAASTIWVWLPSSAPPDRAALEAALRRTPEVRVAVGGPARDVEGFRRSHRDAVEVRRLVARLGADDQLVTFDDVQLAALVTRDEARAEEFVRTVLGDLAEASAELQETVRTYLASLGNASTAAARLFTHRNTVLRRLARADELLPRPLADDALRVGVALEVLRWQAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8Y0</accession>
    <name>A0A0Q8V8Y0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glutamine--fructose-6-phosphate aminotransferase [isomerizing]</fullName>
            <ecNumber evidence="2">2.6.1.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_14705</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-fructose 6-phosphate + L-glutamine = D-glucosamine 6-phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:13237"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58725"/>
            <dbReference type="ChEBI" id="CHEBI:61527"/>
            <dbReference type="EC" id="2.6.1.16"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.16" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896930.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53572">
        <property type="protein sequence ID" value="KRC53572"/>
        <property type="gene ID" value="ASE19_14705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="43416at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004360">
        <property type="term" value="F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901137">
        <property type="term" value="P:carbohydrate derivative biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05008">
        <property type="entry name" value="SIS_GlmS_GlmD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05009">
        <property type="entry name" value="SIS_GlmS_GlmD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035466">
        <property type="entry name" value="GlmS/AgaS_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035490">
        <property type="entry name" value="GlmS/FrlB_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005855">
        <property type="entry name" value="GlmS_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10937:SF0">
        <property type="entry name" value="PTHR10937:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01135">
        <property type="entry name" value="glmS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="7 10" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="8">
        <location>
            <begin position="2"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="9">
        <location>
            <begin position="288"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="9">
        <location>
            <begin position="459"/>
            <end position="601"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="611" mass="64830" checksum="B29DB1C335424133" modified="2016-01-20" version="1">MCGIVGYIGGQQAAPLLLEGLTRLEHRGYDSAGLAVVGSSGVKVAKQAGRVRDLGESLPKRFGGKIGIGHTRWATHGPANDVNAHPHTDESGRVAVVHNGIIDNASALRAELTDAGIALSSDTDTEVLAHLIGLSTAKTLEARTAEALGRIDGTYGIAVAHADFPDRIVVARNGSPLIVGVGDHEMYVASDLAAVVRYTTTVAHLDDGEMATVTAGGFKTYRIEASGLAATDRRAKEVDIDPEAYDAGDHESFMHKEMLEQPARAEAVLRGRLDEKFGTGHLGGLNLDARELRAVKRIKILGCGSAYYVGQMGASLIEELARIPADAEAASEFRYRNPIVEPDTLYVAVSQSGETIDTLLAVQEIQRKGGFVIGLVNVVGSAIAREVDGGIYLHAGPEVAVASTKALTNMYLAFAMLAVQLGRVRDLSIADGRRLINGLTAIPGQIEQILAAEPELAVVAKSLAEAESLFFIGRVRGFPVAREGAQKFKEISYRHAEAYQTSELKHGPLALISTAVPTVAIVPDDELVERNVAALHEIAARGGPLTVVTHPGVDLGDLAGKVERIDVPKNERELDPILLTVPLQVLAYHAALTLGHDIDKPRNLAKSVTVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V982</accession>
    <name>A0A0Q8V982_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Biotin carboxylase</fullName>
            <ecNumber evidence="2">6.3.4.14</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">ASE19_07035</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <reference evidence="16 17" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>biotin</name>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.14" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895267.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53836">
        <property type="protein sequence ID" value="KRC53836"/>
        <property type="gene ID" value="ASE19_07035"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004075">
        <property type="term" value="F:biotin carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034733">
        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013537">
        <property type="entry name" value="AcCoA_COase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011763">
        <property type="entry name" value="COA_CT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08326">
        <property type="entry name" value="ACC_central"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00289">
        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01039">
        <property type="entry name" value="Carboxyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00878">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50979">
        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50989">
        <property type="entry name" value="COA_CT_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00866">
        <property type="entry name" value="CPSASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="14">
        <location>
            <begin position="1"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="13">
        <location>
            <begin position="128"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="domain" description="Lipoyl-binding" evidence="12">
        <location>
            <begin position="587"/>
            <end position="663"/>
        </location>
    </feature>
    <feature type="domain" description="CoA carboxyltransferase C-terminal" evidence="15">
        <location>
            <begin position="1541"/>
            <end position="1820"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="345"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="345"/>
            <end position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KRC53836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1823" mass="195480" checksum="AF35E606B0FCE21C" modified="2016-01-20" version="1">MVSRIAIVNRGEAAVRLIHAVRDLNARPVAGVEPIRTIALHTDVDAGSAFVREADESYLLGAAADRPYLDLAVLERALVESGADAAWVGWGFVAEDPAFAELCARLGVTFIGPSAEAMRKLGDKIGSKLIAEEVGVPVAPWSRGGVHTLEEALASADEVGYPLMLKATAGGGGRGIRKVTSPAELTDAYQRTRDEAERAFGSGIVFLEKLVTDARHVEVQVIADGQGTAWAIGVRDCSVQRRNQKVIEESASPLLEDAQTQDLKASAERLANAVGYAGAGTVEFLYHPGERTFAFLEVNTRLQVEHPITEEVTGTDLVALQIQVARGIPLAGDRPSERGHAVEARLNAEDPDRDFAPAPGRISRLELPSGPGIRVDTGVTEGDTIPADFDSMIAKVIAWGADREQALARLRRAMGETTVVIDGGATNKSFILDLLDQPEVLSGDPVWADTGWIDRVRGEGRLQAARHSGVALVAAAIEAYLEEERAEIARFLQTAQGGRPQAQHDPSRSIELKLRGAAYALTVRQTGPAQYDVTIGAAGAAEERTVTAVLDRLDDVHGRLTVDGHRYRLVTSTHGTVMLVEVDDVMHRVSRDEGGMVRSPAPALVVATPVAVGDEVTAGSPVLVLESMKMETVLHAPFTGRIKELVVRVGSQVETGAPLVRLDPTGDGDEVAGTASYDDLDLPEPMAAAAADCVGSLTGQLLGYDVAPDQRGTVLADHLATRTAAAREAETALLSLFTDFAELSRNRPAGDEHTELRVHSSREHFHTYLRSLDPERGALPDHFRDKLLRVLAHYGVTDLERTPELERAVFRIFLAQQHPSDVDIAVGILQRWLGDPPPAAEDAAAARALLERMVRATQLRFAVVGDLARSIRFGWFDQPAVDVERRAVLEGVPAEVAALTDPAAADRDARIDALTAIPEPLVGFLRDRLADGLPASEPLLEVLVRRHYLEHDLHDLTVADVAGRPVVHAEYATGEKGATRVVSTIGDVTELAPGGALGAALDGAIATDHDNVVEVYLRWPDAPTDPDEASAEVARLLDGQPFVARARRVSVAVCPAAPRPIDYFTFRTDGGENGGELDEDKLVRGMHPMVGRRLNLSRLREFDVTRLDAPDDVLLYECVARTNPADRRLVAAAQVRQLAVVRDEEGRVIALPHAERAVENCLEAIRRVRTARGRAGTSLDVNHVWVTVWPVIEADLDQLTALQGKITPLTESAGIEEVLAEGRVAGPDGKPTPLAIRFHAKPGAGVVADVITPPAEPLKPMDEYAGKVLRARRRGLVYPYELESVLAGGGSLQEYDFDERGVLAPVDRPRGQNTAALIVAVVNTPTPLYPEGIKRVVLCGDPLKSLGALSEPECARVIAAIDLAEELDVPLEWFAVSAGARISMESGTENMDWVADALRRIVEFTQDGGEINIVVAGINVGAQPYWNAEATMLMHTKGILVMTPDSAMVLTGKQSLDFSGGVSAEDNHGIGGYDRVMGPNGQAQYWVRDLAGAFDVLMAHYEHTYVVPGEPGPRRAPTTDPVERDVTSYPHPGADFATVGQIFSAEHNPDRKKPFDIRTVMRSVADADHELLERWAGMADADTAVTVDTRIGGYPVTLIGIESKPVPRAGFPPTDGPDTYTAGTLFPRSSKKVARAINAASGNRPVVVLANLSGFDGSPESMRNLQLEYGAEIGRSIVNFRGPIVFCVVSRYHGGAFVVFSKRLNPSMTVLAIEGSYASVLGGAPAAAVVFAAEVAKRAAADPKVAELQERIDGAADGERGLLLVELAELRHQLHADKIAEIAAEFDGVHNIHRAVEVGSVDEVIAASDLRPKVIGAIEKGLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9F0</accession>
    <name>A0A0Q8V9F0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Sulfurtransferase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_07305</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>hydrogen cyanide + thiosulfate = 2 H(+) + sulfite + thiocyanate</text>
            <dbReference type="Rhea" id="RHEA:16881"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17359"/>
            <dbReference type="ChEBI" id="CHEBI:18022"/>
            <dbReference type="ChEBI" id="CHEBI:18407"/>
            <dbReference type="ChEBI" id="CHEBI:33542"/>
            <dbReference type="EC" id="2.8.1.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895314.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53882">
        <property type="protein sequence ID" value="KRC53882"/>
        <property type="gene ID" value="ASE19_07305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1385159at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004792">
        <property type="term" value="F:thiosulfate sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001307">
        <property type="entry name" value="Thiosulphate_STrfase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00683">
        <property type="entry name" value="RHODANESE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Rhodanese" evidence="3">
        <location>
            <begin position="18"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="3">
        <location>
            <begin position="154"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="282" mass="31730" checksum="2D315AFFAD38BF8E" modified="2016-01-20" version="1">MSRENSLVSVQWVEDNLDNPKVVVIEVDEDTSAYDKGHIKNAIKLDWTTDLQDQVRRDFVNKAQFEALLSERGVANDDTVVLYGGNNNWFAAYAYWYFKLYGHQDVKLMDGGRKKWELDSRELTDELPTRAATTYSAQEQDRTIRAFRDEVVAAIGTQNLVDVRSPDEYAGRLLAPAHLPQEQSQRAGHIPTSVNVPWSKNANDDGTFKSDDELTALYDEVGFDEAKDTIALCRIGERSSLTWFVLQEILGKKNVKNYDGSWTEYGSLVGVPIALGDEPGDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9M7</accession>
    <name>A0A0Q8V9M7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Amidophosphoribosyltransferase</fullName>
            <shortName evidence="5">ATase</shortName>
            <ecNumber evidence="5">2.4.2.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Glutamine phosphoribosylpyrophosphate amidotransferase</fullName>
            <shortName evidence="5">GPATase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">purF</name>
        <name evidence="11" type="ORF">ASE19_07765</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = 5-phospho-alpha-D-ribose 1-diphosphate + H2O + L-glutamine</text>
            <dbReference type="Rhea" id="RHEA:14905"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58681"/>
            <dbReference type="EC" id="2.4.2.14"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="5 8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="5 9">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5 6">In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.14" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895395.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53964">
        <property type="protein sequence ID" value="KRC53964"/>
        <property type="gene ID" value="ASE19_07765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="267682at2"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00124"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004044">
        <property type="term" value="F:amidophosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009113">
        <property type="term" value="P:purine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00715">
        <property type="entry name" value="GPATase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01931">
        <property type="entry name" value="PurF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005854">
        <property type="entry name" value="PurF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035584">
        <property type="entry name" value="PurF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000485">
        <property type="entry name" value="Amd_phspho_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01134">
        <property type="entry name" value="purF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="5 6 11" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5 9" id="KW-0408">Iron</keyword>
    <keyword evidence="5 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 5 6" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="10">
        <location>
            <begin position="5"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="5 7">
        <location>
            <position position="5"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 9">
        <location>
            <position position="250"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="297"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="359"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="360"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 9">
        <location>
            <position position="396"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 9">
        <location>
            <position position="447"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 9">
        <location>
            <position position="450"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR000485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000485-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000485-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000485-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC53964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="489" mass="53079" checksum="1B2EB320CD6197C8" modified="2016-01-20" version="1">MQVVCGVFGVWAPGEDVAKLTYFGLYSLQHRGQESAGISVSNGRQILVYKDMGLVSQVFDENTLESFRGHLAVGHCRYSTTGASTWQNAQPTFRPTADGSIALGHNGNLINTAALAEMVKQLPSDDGELDIHARDLESSTNDTSLVTALLAHHPDQSLEARALELLPQVQGAFSFVFMNENTLYAARDPEGIRPLMLGRLDRGWVVASEDAALATTGASVVREVEPGELIVIDEDGLRSHKFAEPRRKGCVFEYVYLARPDATIANRSVHEARVEMGRQLAREFPVEADLVIPVPESGTPAASGYALESGIPFGQGFVKNAYVGRTFIQPSQTLRQLGIRLKLNALEHMIRGKRIVVVDDSIVRGNTQRAQVRMLREAGATEVHVRISSPPVKWPCFYGIDFATRAELIANGLDVDEIAASVGADSLGYISLEGMVEATGQPQTSLCTACFTGEYPIELPDESLLGKHLLEATLKPSTHGEALPVFNNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9T9</accession>
    <name>A0A0Q8V9T9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Abhydrolase_10 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07745</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895391.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53960">
        <property type="protein sequence ID" value="KRC53960"/>
        <property type="gene ID" value="ASE19_07745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1175812at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045394">
        <property type="entry name" value="Abhydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20091">
        <property type="entry name" value="Abhydrolase_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Abhydrolase_10" evidence="1">
        <location>
            <begin position="19"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="426" mass="44027" checksum="494E498FBAE5F0DC" modified="2016-01-20" version="1">MPPVTLTPLTGGNGIALTSARPGPDLAAAGWSEVEYAAAGSAPLDRPGGRGGTAFTTRVLLRRPESAPASGVLVVEWLNVSSGADAAPDWTYLADELVRQGHAWAGVSAQYNGVESGSAVVAVEGAGLQGLKAVDPVRYGGLHHPGDRHAHAIFTEVARAVAAEVGAGTVLAIGESQSAYLLTTHVNQVHLDDRFFAGYLIHSRGEVAAPAGEDGCGIDLLAARATGVPTPIRDDLDVPVLVLQTEGDLLGRMNYLPARQPDGPLLRVWEVAGAAHADLFQIGDFEAFLGCPDPVNRGQQVYVARAALRHLVAWAQGGPAAPAAPPLEVRDGAFVRDEVGNVRGGVRTPVVDAPVEVLAGDAPGGSVICGLFGRTLALAPEVLHDRWGSQEEYAAAYTAATDAAVTAGFVLPEDRAAVLGEMRTLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA67</accession>
    <name>A0A0Q8VA67_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Uma2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07890</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895420.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53988">
        <property type="protein sequence ID" value="KRC53988"/>
        <property type="gene ID" value="ASE19_07890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2040599at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06260">
        <property type="entry name" value="DUF820"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1570.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012296">
        <property type="entry name" value="Nuclease_put_TT1808"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008538">
        <property type="entry name" value="Uma2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05685">
        <property type="entry name" value="Uma2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Uma2" evidence="1">
        <location>
            <begin position="22"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="20655" checksum="6508AC743A3D4801" modified="2016-01-20" version="1">MVELEVPPIERRRMSYAEWWALPEKPKSEWVDGEVVIVNVPPSLDHSDSGNGLRDALKSSLPGIKVYTDVPLRLPRNRVRRPDLMAFDHRPAGEPVEETPILVVEVLSRGTHTVDVLEKAPEYAEAGIGQFWIIDPEARTLDVYCLTDSRWEPLLRLDDFARSGEVVVADHGTVRLELGQVLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA71</accession>
    <name>A0A0Q8VA71_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895520.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54088">
        <property type="protein sequence ID" value="KRC54088"/>
        <property type="gene ID" value="ASE19_08480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="34"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="165" mass="18504" checksum="353BED5168775D63" modified="2016-01-20" version="1">MATIDIDAITRDRERIKKEYLAPEGERPESSARGIHHAALLSSDVRRTVEFYQGLLEFPLTEIFENRDYAGSDHFFFDVGVGNLLAFFTLPGLDLGPYQEVLGGHHHIAISVTREKWDLLRAKLDDAGVAYHLESNASLYFPGPDGERLELLADPLGEMYGTKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA80</accession>
    <name>A0A0Q8VA80_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cation diffusion facilitator family transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_16110</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893603.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50135">
        <property type="protein sequence ID" value="KRC50135"/>
        <property type="gene ID" value="ASE19_16110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="381612at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006829">
        <property type="term" value="P:zinc ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1510.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002524">
        <property type="entry name" value="Cation_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027469">
        <property type="entry name" value="Cation_efflux_TMD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040177">
        <property type="entry name" value="SLC30A9"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13414">
        <property type="entry name" value="PTHR13414"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01545">
        <property type="entry name" value="Cation_efflux"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161111">
        <property type="entry name" value="SSF161111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01297">
        <property type="entry name" value="CDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359855" evidence="7">
        <location>
            <begin position="22"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="71"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="106"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="162"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="186"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC50135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="33780" checksum="8436B20E466F1BDC" modified="2016-01-20" version="1">MLTVVVAFTANLLIAVAKSVAAVVTGSASMIAEAAHSWADAGNEVFLLIGERRAARPPDATHTLGYGRVGYIWSMFAAFGLFTVGAAVSVWHGVQSLGAEEEAPSYTWAYVVLALAFVLEGTSFLQALREARTAASRRRVSPLRYLKVTSNPMLRAVFAEDLAALIGLAVAFVGILLHQLTGDPVWDAIGSIVVGVLLGVVALILIRRNMDFLTGETVTPLTRDVALRALLDHPEIARISYLYMEWVGADRIFLVAAVDLVGDAPESDVAERLGSIANALHDRPEIVRAVLTLTRPGDATDLQPGVLPEWYRPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA89</accession>
    <name>A0A0Q8VA89_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895661.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54229">
        <property type="protein sequence ID" value="KRC54229"/>
        <property type="gene ID" value="ASE19_08975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="139"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="163"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="202"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="240"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="266" mass="28713" checksum="6B7F43A53958E727" modified="2016-01-20" version="1">MRPKTSAVDSLKSGFATAGDIVRFSGSVVRSFRDVRLYSTEVLHQAGVLILTSGLIIWAMQGVMGTVCGLEASYTLKQIGAPLYSGIFNAFCSLREMSPYMWGYIFAAKVGCGLVAELGSMRISDEIDALEVMGVKSKAYLVGTRILAAWIAIPFLYTVGLAVMYVTMYLVTVVQLGGVSPGGYLYIFWLYQNPLDFLYSQIKVLSYGTAIVFVGCYYGFNASGGSVGVGRATAKSMMINMVLIHVLGVLTTQLFWGLSPNAPIAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC40</accession>
    <name>A0A0Q8VC40_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13730</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897101.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53401">
        <property type="protein sequence ID" value="KRC53401"/>
        <property type="gene ID" value="ASE19_13730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1931100at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="167" mass="18070" checksum="FFC6545660D78D73" modified="2016-01-20" version="1">MDIQRLAEALAPLLRDPEAEDSFAYGLAALPAAGTDLMVNVDPELEDRDDVTVEALVERVGAFLAMSPDQWEQVLLDVVAEVEDAVGEQAIAEPTALHDDLALTSSVVFVDAVLLSFLAPLQFPDGVIRVQLDADLAFEDIDIEIEGVETITFDGLDEMLDQLSQDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCU4</accession>
    <name>A0A0Q8VCU4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 10">Purine nucleoside phosphorylase</fullName>
            <ecNumber evidence="6 10">2.4.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Inosine-guanosine phosphorylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_05865</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta-(deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate. Cleaves guanosine, inosine, 2'-deoxyguanosine and 2'-deoxyinosine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>a purine 2'-deoxy-D-ribonucleoside + phosphate = 2-deoxy-alpha-D-ribose 1-phosphate + a purine nucleobase</text>
            <dbReference type="Rhea" id="RHEA:36431"/>
            <dbReference type="ChEBI" id="CHEBI:26386"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57259"/>
            <dbReference type="ChEBI" id="CHEBI:142361"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Purine metabolism; purine nucleoside salvage.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the PNP/MTAP phosphorylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.1" evidence="6 10"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894103.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54972">
        <property type="protein sequence ID" value="KRC54972"/>
        <property type="gene ID" value="ASE19_05865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1364220at2"/>
    <dbReference type="UniPathway" id="UPA00606"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004731">
        <property type="term" value="F:purine-nucleoside phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009116">
        <property type="term" value="P:nucleoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09009">
        <property type="entry name" value="PNP-EcPNPII_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011269">
        <property type="entry name" value="PUNP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011268">
        <property type="entry name" value="Purine_phosphorylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018099">
        <property type="entry name" value="Purine_phosphorylase-2_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11904">
        <property type="entry name" value="PTHR11904"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000477">
        <property type="entry name" value="PurNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="SSF53167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01697">
        <property type="entry name" value="PNPH-PUNA-XAPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01698">
        <property type="entry name" value="PUNP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01240">
        <property type="entry name" value="PNP_MTAP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PNP_UDP_1" evidence="12">
        <location>
            <begin position="99"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphate binding" evidence="11">
        <location>
            <begin position="99"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>a purine D-ribonucleoside</name>
            <dbReference type="ChEBI" id="CHEBI:142355"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="219"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="242"/>
        </location>
        <ligand>
            <name>a purine D-ribonucleoside</name>
            <dbReference type="ChEBI" id="CHEBI:142355"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00011886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR000477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000477-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC54972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="279" mass="28763" checksum="A424891C0ABA21E2" modified="2016-01-20" version="1">MTDSPSPYALAEEAATRLAELTGVPRHDVALVLGSGWLPAAEALDPTGENTTEISVTDLPGFGASAVAGHSGKVRSIRLPGGDGPDGSGDRHLLAFLSRTHYYEGKGVSAVVHGVRTAAAAGCRAIVLTNGCGGLKETWTPGTPVLISDHINLTGQSPIVGANFVDLTDLYSSRLRDLCRAVEPTLDEGVYVQFTGPHYETPAEVRMAGILGGHLVGMSTTLEAIAAREAGMEILGISLVTNLAAGLSGEPLNHAEVLEAGRAAATRMGALLGEVVPRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD18</accession>
    <name>A0A0Q8VD18_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">VanZ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05960</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894087.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54987">
        <property type="protein sequence ID" value="KRC54987"/>
        <property type="gene ID" value="ASE19_05960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1817301at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006976">
        <property type="entry name" value="VanZ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04892">
        <property type="entry name" value="VanZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="VanZ" evidence="2">
        <location>
            <begin position="95"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="196" mass="20259" checksum="8913A186A45950BC" modified="2016-01-20" version="1">MVGFGGTGVMLLGVVAAAIACGLLGLALLRPLGWVSAASIAGFLWAVAVIGLVTLVPTSAHTGIVPAETRMTTCSWDIGGPAPDGFWIFESGQRTLNTVLFVPAGALLVLAVARWRAGWLLAPLGLLGLAGYSALIEKTQLELARIDRACDVTDIIDNTTGAVVGAVIGLCLLPVLQPWRHRAQHGSRPSSVRGSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD96</accession>
    <name>A0A0Q8VD96_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Phosphomannomutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_05985</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the phosphohexose mutase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894083.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54991">
        <property type="protein sequence ID" value="KRC54991"/>
        <property type="gene ID" value="ASE19_05985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="637615at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016868">
        <property type="term" value="F:intramolecular transferase activity, phosphotransferases"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005844">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016055">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I/II/III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005845">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005846">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005843">
        <property type="entry name" value="A-D-PHexomutase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036900">
        <property type="entry name" value="A-D-PHexomutase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016066">
        <property type="entry name" value="A-D-PHexomutase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005841">
        <property type="entry name" value="Alpha-D-phosphohexomutase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02878">
        <property type="entry name" value="PGM_PMM_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02879">
        <property type="entry name" value="PGM_PMM_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02880">
        <property type="entry name" value="PGM_PMM_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00408">
        <property type="entry name" value="PGM_PMM_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00509">
        <property type="entry name" value="PGMPMM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53738">
        <property type="entry name" value="SSF53738"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55957">
        <property type="entry name" value="SSF55957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00710">
        <property type="entry name" value="PGM_PMM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PGM_PMM_I" evidence="9">
        <location>
            <begin position="55"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_II" evidence="10">
        <location>
            <begin position="218"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_III" evidence="11">
        <location>
            <begin position="328"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_IV" evidence="8">
        <location>
            <begin position="450"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="468"/>
            <end position="495"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC54991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="556" mass="57210" checksum="5FF4C17BA6DCDBAF" modified="2016-01-20" version="1">MTTPDTDVLLTRAQSWLAEDPDARTRDELTQVIAAVEAGDADARADLADRFRGTLEFGTAGLRGALGAGPNRMNRVVVIRAAAGLAAYLLAEGTDPGTPVVIGYDARHNSDVFARDTAEVMAGAGLKPLLLPRPLPTPLLAFAIRELGCAAGVMVTASHNPPQDNGYKVYLGDGSQIVPPADSGIAAQIAAVGTLSSVPRVPLESTGGRVLDEGIIDAYLDTVAAVAADGPRDLAIVYTPLHGVGGGALPSVLETAGFTAPAIVTEQEQPDPDFPTVAFPNPEEPGAIDLAVALAERTGADIVVANDPDADRCAAAVPGPDGWRMLRGDEVGALLADHLLKAGREGVYATSIVSSSLLGTMARAAGQRYAETLTGFKWIGRLPDLAFGYEEALGYCVDPANVADKDGVSAALLLCEIAAEAKAAGRSLPELLDDIAIEHGLHATDQLSVRVTDLSLIAAAMEQLRTAPPATLGGSPVTTADDLTKGSADLPPTDGLRYRTADGSRVVVRPSGTEPKLKCYLEVVVPVADGDVAAARTIAAERLAGLRADIAAAAGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDI5</accession>
    <name>A0A0Q8VDI5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">D-aminoacyl-tRNA deacylase</fullName>
            <shortName evidence="1">DTD</shortName>
            <ecNumber evidence="1">3.1.1.96</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Gly-tRNA(Ala) deacylase</fullName>
            <ecNumber evidence="1">3.1.1.-</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">dtd</name>
        <name evidence="2" type="ORF">ASE19_07205</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA-based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a D-aminoacyl-tRNA + H2O = a D-alpha-amino acid + a tRNA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13953"/>
            <dbReference type="Rhea" id="RHEA-COMP:10123"/>
            <dbReference type="Rhea" id="RHEA-COMP:10124"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:59871"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:79333"/>
            <dbReference type="EC" id="3.1.1.96"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>glycyl-tRNA(Ala) + H2O = glycine + H(+) + tRNA(Ala)</text>
            <dbReference type="Rhea" id="RHEA:53744"/>
            <dbReference type="Rhea" id="RHEA-COMP:9657"/>
            <dbReference type="Rhea" id="RHEA-COMP:13640"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78522"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">A Gly-cisPro motif from one monomer fits into the active site of the other monomer to allow specific chiral rejection of L-amino acids.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DTD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.96" evidence="1"/>
    <dbReference type="EC" id="3.1.1.-" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895297.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53865">
        <property type="protein sequence ID" value="KRC53865"/>
        <property type="gene ID" value="ASE19_07205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1862614at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051499">
        <property type="term" value="F:D-aminoacyl-tRNA deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106026">
        <property type="term" value="F:Gly-tRNA(Ala) hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043908">
        <property type="term" value="F:Ser(Gly)-tRNA(Ala) hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019478">
        <property type="term" value="P:D-amino acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00518">
        <property type="entry name" value="Deacylase_Dtd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003732">
        <property type="entry name" value="Daa-tRNA_deacyls_DTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023509">
        <property type="entry name" value="DTD-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10472">
        <property type="entry name" value="PTHR10472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02580">
        <property type="entry name" value="Tyr_Deacylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69500">
        <property type="entry name" value="SSF69500"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00256">
        <property type="entry name" value="TIGR00256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1" id="KW-0820">tRNA-binding</keyword>
    <feature type="short sequence motif" description="Gly-cisPro motif, important for rejection of L-amino acids" evidence="1">
        <location>
            <begin position="133"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="142" mass="14800" checksum="26A5446BC6F66E58" modified="2016-01-20" version="1">MRAVLQRVTSASVVVDGAVVGALAAPGLLVYLGITHEDGPAEVAWMARKIRDLRILPDETSVADNGAPVLVVSQFTLYGDARKGRRPTWTAAAPGPVSEPLYDAVCAALEEAGTPVERGVFGADMAVTSVNDGPFTVLLETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEC6</accession>
    <name>A0A0Q8VEC6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11480</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917960.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53008">
        <property type="protein sequence ID" value="KRC53008"/>
        <property type="gene ID" value="ASE19_11480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041664">
        <property type="entry name" value="AAA_16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13191">
        <property type="entry name" value="AAA_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="866"/>
            <end position="928"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="928" mass="95948" checksum="9DB65ED7B4175AB9" modified="2016-01-20" version="1">MTEHRLVERETSLATARSRVAGLRAGTGGALCLVAPAGAGKTALLGAILEDTGPVRVLWATAGELEAHAPYGVVRQLFSRALAGLTTAQLEAIAHGAARPAVDLVLHRPGAEPVDQSVMLNSLYWLLDGLTAEGPLVLAVDDAHWADDASLLFLQHLLARLEDLPVLQVVAARDVLPDRRRPALAAVLADTRAVRLDVAPLSPNGVRACLAERWGAEADDAVVAACAEVTGGNPFLVVALGDLLAARPGTTTADAVRTLVPGSVVDTVIQRLSALPPAEQSLARALAALDSAPLRTAAALADLDVASAGDAADALRDAGLLATDGPLAFRHALLRSAVSTSTAPAARDRLHRRAARILAEEDVHAAAGHLLEVEGVGDAWAVGLLHTAALTAFGQGAPHVAVDLLRRAVAEPPPAADLPALLVALGTAELHAGDPAAVITLERAGQGVSDPVLRAQCGLALAAAYHVAGFYDRTVPLLADALEGLGPEHGDLRLVTEAMLVAAALTVPAAVADARARLAAHGHLAGDTPGERLLLIQQASVSNASSAPIAEAGELARRAIGDGLTPEQTASPFDWTIARTHLACSGAYAATADLCARGLEHAAREGSVPLYAAASVTRGWAHLWAGRVDDSLTDFDEALLQADVVPGGQVLRLLAAAGRAEGLLAQGLQAEAEAAVDDVPDAVAKDPSNATGIHLLRARGLVRAAAGRHDEALASFEACAERLAALDMDSPTWCDWRAPTAESLWALGRVDEAWAVARDGLEVAERKAAAGVLGHALRTIGEIAGAGGLDDLRRSVAVLEASEARLQEARSRVALGSALRRTGQRAEGREQLRIGRELAHRLGAHALTERASAELALAGGRVARIDVTGVAALTSAERRVCELAAGGLRNRDIAQRLFVTTKTVEVHLSRAYRKLGVGRDELATALGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VES6</accession>
    <name>A0A0Q8VES6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CoA carboxyltransferase C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11995</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895029.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53101">
        <property type="protein sequence ID" value="KRC53101"/>
        <property type="gene ID" value="ASE19_11995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="886663at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034733">
        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011763">
        <property type="entry name" value="COA_CT_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01039">
        <property type="entry name" value="Carboxyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50989">
        <property type="entry name" value="COA_CT_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA carboxyltransferase C-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="22764" checksum="256DD2C72C90274A" modified="2016-01-20" version="1">MVTGLGRVEGIPFGVIANNAAVSGGAIDSEAADKAARFMQLCDAHRLPILSLCDTPGNMIGPVSEATGLVRHCSRPFVVGANLTVPIFAVLVRKAYGLGRQSMLGGSMRAPQFTVAWPGAEYGSMGLEGQVKAGRRRELEAINDPEERDRRFQEMVDELFDKARAVNAAAAFSVDEVLDPVDTRAWLTAGIRSLDPATLAKRERRSHVDTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFA8</accession>
    <name>A0A0Q8VFA8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12770</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895692.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53229">
        <property type="protein sequence ID" value="KRC53229"/>
        <property type="gene ID" value="ASE19_12770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="41"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="123"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="444" mass="47122" checksum="217E496C16435139" modified="2016-01-20" version="1">MLLTPLIKRQLRIFAVLATFALGFAFIHYARVPAMLGVGVYDVKVDFKDASGLYPKAAVTYRGVKVGLVSDLDVTDTGAVATLRIDNGTDIPAGVSAELHSTSAIGEQYVDLVDPTRSGSGGETLSQGAEIPRERAVDMPQITPVLDSVNRLLESVPKQETKAVLDQIDEGLGGAGPELNELVDSSGKLLTEAQSQIDATTSLIAALQPVLGTQADLAPRTQAYADSLDDVTGALARNDSADLRALLRNAPGGLDAATRTVTDLQPVLPMMLANLTTNAQVLNTYLPQVRQTLVVYPSLVARALTVLEPRAAEGDVQLDLRAALNNPPTCQSGYLPAQQRRSPRITETRPVDRLAHCRLAPDNPTAVRGARNLPCPSSTLRGPTPAACGLTFRGGVWPGSRGTVAYDLAVGRGDDSIDLTDRTARKNQGDDLWKILVLAPLGTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFT5</accession>
    <name>A0A0Q8VFT5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13475</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895819.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53357">
        <property type="protein sequence ID" value="KRC53357"/>
        <property type="gene ID" value="ASE19_13475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1608241at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005361">
        <property type="entry name" value="UPF0158"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03682">
        <property type="entry name" value="UPF0158"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="157" mass="17972" checksum="B51C33A4416A463D" modified="2016-01-20" version="1">MVDLNAIDVEELASALADQTDYDHRWLIDPRSGEIVFWTSDTGIDGENSVDIDELDHLVLIDPLPSYVWYQDMVDFAEGISDRRSGERLSRTLQGKGAFRRFRNELHQRHPDLVSVWRAFSDGRAAARAVRWLVEEGIVDDDDAQRFCLDNPEAQLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGX1</accession>
    <name>A0A0Q8VGX1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PBP_domain domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02115</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56648">
        <property type="protein sequence ID" value="KRC56648"/>
        <property type="gene ID" value="ASE19_02115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024370">
        <property type="entry name" value="PBP_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12849">
        <property type="entry name" value="PBP_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360030" description="PBP_domain domain-containing protein" evidence="1">
        <location>
            <begin position="20"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="domain" description="PBP_domain" evidence="2">
        <location>
            <begin position="115"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="420" mass="44783" checksum="D05C302CFEFB30B1" modified="2016-01-20" version="1">MLGLATLAGLALTLTPAHADPAPQPDDVVATGSDIIQNSFNFLADGYHQLPGYNTAGNRFRFINFDSSGDAQGRSGFTDPRLLPTITGNGTIGDADTKYVKQSDIKLLNPTIALRAGQDLVVRPTGGGGGGRDAIINDDLDWIDVGRSPDALNDTHQNLIQSKQGTKLYRIQIATDRQLIATATTTNAPATLSADTILKIYNGTYDTWGDIPGYAGPAPSDTIIPLILPTDAGMWNTFVKNVGQQNPGVSVTSDSLRSNPNKIQVQQNDPTAITSLGALAKNAIVPFPRGRYRTLNTGYYTQTFDGQKTNNYNTETGHRTPADASGIKLLDGDSTSDQLNASAPYGGNFAYNALVRESDLTSNEPWQPGSTLNWVEALFYNPDGPLPFVRTPAGQALLEAAGVTPDYHVFGTNNAEIPVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH58</accession>
    <name>A0A0Q8VH58_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pilus assembly protein CpaF</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_02675</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892762.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56744">
        <property type="protein sequence ID" value="KRC56744"/>
        <property type="gene ID" value="ASE19_02675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="473670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00662">
        <property type="entry name" value="T2SP_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="3">
        <location>
            <begin position="349"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="13"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="504" mass="55084" checksum="2D69AC966ABE961F" modified="2016-01-20" version="1">MSSLSERLAAARREAAAQGKHAAEVSDEVEEVATGVEVEQASQPAAAGSTAATTGPLSARAAAAGADQRAPARRTLAGAEVDRIEDLKSSVHEELLKRLGPHLYDAEMDQEELDQTVRSVLSEVLGAQDRPLSAGDRSRVTQEITDDILGYGPIDPYLRDPEVSEVMVNGFNDVWLERDGRLLKADAHFADEAHLRRTIDKIVSRIGRRVDESSPMVDARLPDGSRVNAIVPPLSIDGSALTIRKFSTDPYTVQDLINFGSLTPQTADFLDACVRGRLNVIVSGGTGAGKTTTLNVLSSFIPRDERIVTIEDAAELQLKQEHVVRLESRPANIEGKGAVTIRDLVRNSLRMRPDRIVVGEVRDASALDMLQAMNTGHDGSICTLHSNGPRDTLARMETMVLMAGMDLPIRAIREQVASAVDLIVHQTRFKDGSRRITHITEVERMEGDIITLQDIFVFDNSAGFDENGRILGRMRSTGLRPKFLEKLAYANVAVDPTIFRMDRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHD0</accession>
    <name>A0A0Q8VHD0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03635</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56906">
        <property type="protein sequence ID" value="KRC56906"/>
        <property type="gene ID" value="ASE19_03635"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007383">
        <property type="entry name" value="DUF445"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04286">
        <property type="entry name" value="DUF445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="398"/>
            <end position="418"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="419" mass="45917" checksum="930288391707B13E" modified="2016-01-20" version="1">MSGPLIPTDPSADEVRRSALRRMRTVAVSLLVLAAVVYVATLGLDGAWGFVNAGAEASMVGAIADWFAVTALFKHPLGLPIPHTALIPKRKDDLGKGLEDFVGENFLQEEIIRERVLGVQIAQRVGDWLAVPANAERVVTEGSEIAAVALGKVRDEHVEALVTEALVPRFREEPIAPLLGGLLAEALHDDLHHGLVDLMLEEMHGWLLANPDTVHEVLGERAPWWAPDSVNTYVINRAHLEMVRWVADIRANPSHRARRALDSMLGRLSDDLLANPDTQARAERLKERVLDHPAVIATAVTLWQALRKALLSSLDDPDGAVRRRLLVEVEAGSARLRADAPLRERLDRMAADAAVFAVDRYGSELTTVITHTIERWDGKEAAQRIELHVGRDLQFIRINGTIVGGLVGVLIHAISVVLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHD5</accession>
    <name>A0A0Q8VHD5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894208.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54873">
        <property type="protein sequence ID" value="KRC54873"/>
        <property type="gene ID" value="ASE19_05295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1582456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="30025" checksum="E580B179CF269450" modified="2016-01-20" version="1">MILSTDRPTRIDLGGAHVVITGGARGIGRATAEAFLARGATVSIGDLDLAAATATAEEIGASGHHVDVADAASYDAFVSAAEAEHGPVDVLVNNAGVMPSGAFLEQTPATDRLTMEVNVQGVINGLRRVLPGMVERRRGHVVNIASLAGKFPVPGLAVYNASKFAVVGLTAATRLEMAPHGVTLTAVLPSAVDTDLASGFDMRPIPKVKPSDIADAVVGSVRHRAAEIAVPRYVGAIAAGTHLVPVPVMDRVRKVVKGDRALHPDTAARAAYTARLDEAAHTHASNDRSNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHF7</accession>
    <name>A0A0Q8VHF7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MPAB_Lcp_cat domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02595</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892749.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56731">
        <property type="protein sequence ID" value="KRC56731"/>
        <property type="gene ID" value="ASE19_02595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="624204at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037473">
        <property type="entry name" value="Lcp-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018713">
        <property type="entry name" value="MPAB/Lcp_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37539">
        <property type="entry name" value="PTHR37539"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09995">
        <property type="entry name" value="MPAB_Lcp_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MPAB_Lcp_cat" evidence="2">
        <location>
            <begin position="107"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="351"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="384"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="406" mass="45104" checksum="3B570BF7F1462525" modified="2016-01-20" version="1">MVTEQLPDAIPTSLRRVDEAHRRFGTFTDTYLAGMWQGDPLADAFVADFADLGHGRAMRMLRQACREGIDAVADAPASLKALFAALDDVPEWVDTRRIDRDSRYTSRYSLASGIVLGAASLVSGYANSAASRPLELTGRYVENAGARTIEVGSWLMAVNQPGGLERFSDGFELTVRVRIIHALVRADLARRADWDAAAWGVPICRAYVAYTLVEFTLIPLRAMQQIGAPYLPHEVDAAYARWRYLGHLLGISPELLPRDEAEQERLEEIYLLTRPVVDDYCRALVASINREFLVPEIEGVLPRLLGRHAPTVVHALERLFLGDEIADDLAIPHTRLTGVIARTGPLLSAVNRRRDRKGSSLPRRTEKGRAYELEQEARLRRDWNVQHDLVDASPGGGRSHPARGDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHI7</accession>
    <name>A0A0Q8VHI7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">ATP synthase epsilon chain</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">ATP synthase F1 sector epsilon subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">F-ATPase epsilon subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">atpC</name>
        <name evidence="11" type="ORF">ASE19_03190</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Produces ATP from ADP in the presence of a proton gradient across the membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7 8">F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Cell membrane</location>
            <topology evidence="1 7">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7 8">Belongs to the ATPase epsilon chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892847.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56828">
        <property type="protein sequence ID" value="KRC56828"/>
        <property type="gene ID" value="ASE19_03190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1696893at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd12152">
        <property type="entry name" value="F1-ATPase_delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00530">
        <property type="entry name" value="ATP_synth_epsil_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001469">
        <property type="entry name" value="ATP_synth_F1_dsu/esu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020546">
        <property type="entry name" value="ATP_synth_F1_dsu/esu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036771">
        <property type="entry name" value="ATPsynth_dsu/esu_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13822">
        <property type="entry name" value="PTHR13822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02823">
        <property type="entry name" value="ATP-synt_DE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51344">
        <property type="entry name" value="SSF51344"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01216">
        <property type="entry name" value="ATP_synt_epsi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7 8" id="KW-0139">CF(1)</keyword>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="4 7 8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 8" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ATP-synt_DE_N" evidence="10">
        <location>
            <begin position="9"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="97"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC56828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="135" mass="14519" checksum="539BEC4F159A64C8" modified="2016-01-20" version="1">MAETAVEHLHVELVAADRTVWSGEAAMIIARTLEGDIGVLRGHAPTLSLLQASVVEIQVAGTNQLVVVAVDGGVLSVANDRVSILAEHIEKAEDIEVSQARIDLEEAKRLLDSSNEAEQRLRHAEARIRAAEKVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHL7</accession>
    <name>A0A0Q8VHL7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_03715</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892937.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56920">
        <property type="protein sequence ID" value="KRC56920"/>
        <property type="gene ID" value="ASE19_03715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1531811at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="31"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="60"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="93"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="145"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="188"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="27"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="215"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="235" mass="23874" checksum="3B5C147197728747" modified="2016-01-20" version="1">MNLFGDALSWIFDGSHWGGPSGIDTRILQHLWVTFAAVGIAAVLAIPIGILIGHTGRGRLVVVALAGAVRAVPTLGLLTLLGLWLGIGVEAPLLALVALGFPSLLAGAYAGIESADAGAVDAARAIGLSEWQIVTRVEIPLGADVLIGGLRAATLQVVATATLAAYISDTGLGRYLFAGLKSRDYPQMLAGALLVAALALLLDLALGAVQRASRGHTRAHGSQTRDPAGAAPSKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHM8</accession>
    <name>A0A0Q8VHM8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07585</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895364.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53933">
        <property type="protein sequence ID" value="KRC53933"/>
        <property type="gene ID" value="ASE19_07585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1967657at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="174"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="194" mass="21131" checksum="663849BE4A0CD166" modified="2016-01-20" version="1">MTAQTNDTTEPAVWAAAIERLANRPLPEEWITLHDRAAVQAVAAARVQLTRIRREVAARHTDDDVPVDEHPNVVAAQAVVDEKTAAAADLAIEFHLRAMRPDRYDALQRAHPPTDDQAKLGMVFNPETFFPALVASCSVKPLTVDQATDIVNAGTRGDAGRLFMVCRNLNESSQLTVGRPPGRTTTTEEVSGDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHR8</accession>
    <name>A0A0Q8VHR8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Iron-sulfur cluster insertion protein ErpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02825</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893073.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57038">
        <property type="protein sequence ID" value="KRC57038"/>
        <property type="gene ID" value="ASE19_02825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1891602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.300.12">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000361">
        <property type="entry name" value="FeS_biogenesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016092">
        <property type="entry name" value="FeS_cluster_insertion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017870">
        <property type="entry name" value="FeS_cluster_insertion_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035903">
        <property type="entry name" value="HesB-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01521">
        <property type="entry name" value="Fe-S_biosyn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89360">
        <property type="entry name" value="SSF89360"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00049">
        <property type="entry name" value="TIGR00049"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01152">
        <property type="entry name" value="HESB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe-S_biosyn" evidence="1">
        <location>
            <begin position="2"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="105" mass="11307" checksum="846DE767FB6E62CD" modified="2016-01-20" version="1">MNLSPVAATKVKSLLEQEGREDLALRISVQPGGCSGLRYQLFFDERTLDGDVVTDFDGVAVVVDRMSIPYLNGAVIDFVDTIEKQGFTIDNPNATGSCACGDSFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHU5</accession>
    <name>A0A0Q8VHU5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">1-deoxy-D-xylulose 5-phosphate reductoisomerase</fullName>
            <shortName evidence="7">DXP reductoisomerase</shortName>
            <ecNumber evidence="7">1.1.1.267</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">1-deoxyxylulose-5-phosphate reductoisomerase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">2-C-methyl-D-erythritol 4-phosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">dxr</name>
        <name evidence="11" type="ORF">ASE19_03035</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>2-C-methyl-D-erythritol 4-phosphate + NADP(+) = 1-deoxy-D-xylulose 5-phosphate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:13717"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:58262"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.267"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1 7">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 1/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the DXR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.267" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892825.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56806">
        <property type="protein sequence ID" value="KRC56806"/>
        <property type="gene ID" value="ASE19_03035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1200722at2"/>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00092"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030604">
        <property type="term" value="F:1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070402">
        <property type="term" value="F:NADPH binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00183">
        <property type="entry name" value="DXP_reductoisom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003821">
        <property type="entry name" value="DXP_reductoisomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013644">
        <property type="entry name" value="DXP_reductoisomerase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013512">
        <property type="entry name" value="DXP_reductoisomerase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026877">
        <property type="entry name" value="DXPR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036169">
        <property type="entry name" value="DXPR_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30525">
        <property type="entry name" value="PTHR30525"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08436">
        <property type="entry name" value="DXP_redisom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02670">
        <property type="entry name" value="DXP_reductoisom"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13288">
        <property type="entry name" value="DXPR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006205">
        <property type="entry name" value="Dxp_reductismrs"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69055">
        <property type="entry name" value="SSF69055"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 7" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0521">NADP</keyword>
    <keyword evidence="5 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DXP_reductoisom" evidence="8">
        <location>
            <begin position="7"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="domain" description="DXP_reductoisom" evidence="8">
        <location>
            <begin position="60"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="domain" description="DXP_redisom_C" evidence="9">
        <location>
            <begin position="123"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="DXPR_C" evidence="10">
        <location>
            <begin position="239"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="10"/>
            <end position="39"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC56806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="372" mass="38797" checksum="23B19CFD632D8775" modified="2016-01-20" version="1">MRTVKDVIILGSTGSIGTQALDLVRANPDRFRVVGLTAGGGNPDLFEQQVAEFAPRFHGLGEDASTDAAGQDCDVVLNGITGAVGLRPTLAALDAGNTLALANKESLVMGGPLVLERAAPGQIVPVDSEHSALAQCLRGGSPAEVRRLVLTASGGPFRGRTRAELADVTPEQAGNHPTWDMGPVITINSATLVNKGLEVIEAHLLFGIPYDRIEVVVHPTSVVHSMVEFVDGSTLLQASPPTMLIPIALGLDWPDRVPDAAPAVDWTQPETWQFLPLDDEAFPAVALARAAGERGATAPAVYNAANEVAVDAFRTGGLAFTGIVDVVGDVLAAHDVPSNQQISLDDVLAADAWAREAAARTIADRGSTTRTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHU9</accession>
    <name>A0A0Q8VHU9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HNHc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_03905</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892973.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56956">
        <property type="protein sequence ID" value="KRC56956"/>
        <property type="gene ID" value="ASE19_03905"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00085">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003870">
        <property type="entry name" value="DUF222"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003615">
        <property type="entry name" value="HNH_nuc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02720">
        <property type="entry name" value="DUF222"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00507">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNHc" evidence="3">
        <location>
            <begin position="340"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="467"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="39"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="515" mass="56123" checksum="F4E3E02383D47E51" modified="2016-01-20" version="1">MSTAQLAPPHPILGGVAGLRALVAEMADAQPTYLTTTEKQAALVELARLEAQVAEVRLRVLAAADEVGEESGARDAAAWVAAATRADSETVRRDVQLAKALERRPLVAAGMRAGAVSVAQARAITAGVDALPTTIGADVLREAEATLVGHAADFRPRELGRLARRILDVVAPEVAEEELARRLEDEEREARERESLRYRDNPDGTSDIWWRCPTTIRKRLWAYLQAMTSPRKEGRRAPKDARPPRRRAYAAALATLLEQVDPSGLPAHGGDATTLLVTMTLGQLQAELARAGILTPDGVDDISAEQARRLACSAGIVPVVLGSRGEVLDLGRRSRLFSAAQRRAIRLRDHRCRAEGCDAPAAWCEVHHRQPWAQGGRTDLADGVSFCSHHHHRVHDHRYEATWLPSVTCGSIGADRPGRRCRPHSVRAAPPRQIVGQRLLKQTRHDRGSCWMLLACRRSARVSRSSSARSEAAISRMTSSRSGESRGPLGRSRSVSVTCIASMALMRSSPWLPRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHX2</accession>
    <name>A0A0Q8VHX2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Dihydropteroate synthase</fullName>
            <shortName evidence="1">DHPS</shortName>
            <ecNumber evidence="1">2.5.1.15</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Dihydropteroate pyrophosphorylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08030</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; tetrahydrofolate biosynthesis; 7,8-dihydrofolate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DHPS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.15" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895445.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54013">
        <property type="protein sequence ID" value="KRC54013"/>
        <property type="gene ID" value="ASE19_08030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275854at2"/>
    <dbReference type="UniPathway" id="UPA00077">
        <property type="reaction ID" value="UER00156"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004156">
        <property type="term" value="F:dihydropteroate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046656">
        <property type="term" value="P:folic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00739">
        <property type="entry name" value="DHPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045031">
        <property type="entry name" value="DHP_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006390">
        <property type="entry name" value="DHP_synth_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000489">
        <property type="entry name" value="Pterin-binding_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20941">
        <property type="entry name" value="PTHR20941"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00809">
        <property type="entry name" value="Pterin_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="SSF51717"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01496">
        <property type="entry name" value="DHPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00792">
        <property type="entry name" value="DHPS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00793">
        <property type="entry name" value="DHPS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50972">
        <property type="entry name" value="PTERIN_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0289">Folate biosynthesis</keyword>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pterin-binding" evidence="2">
        <location>
            <begin position="5"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU361205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="287" mass="30240" checksum="FD2E56D8CF1C8EC3" modified="2016-01-20" version="1">MTGLPLVMGVVNVTPDSFSDGGRYDDPERAVAHGLQLLADGADILDVGGESTRPGATRPLLAEEIDRVVPVIEALAARGATVSVDTMRAEVAARALAAGASIVNDVSGGLADPAILDVVAQTGATYVAMHWRAHSDTMQQFTQYDGGVVRAVAEELEQRVEVIRAAGVAEDRIVLDPGLGFAKLAEHNWELLRHLDEVSLGFPLLVGASRKTFLGRLLEGPDGEPRPVGEREAAGVAISALLSAGLGGTAVWCLRVHDVRAHRDALAVAAQWSGQPAVRAAERHERH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHY4</accession>
    <name>A0A0Q8VHY4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Heme peroxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_04105</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893097.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57064">
        <property type="protein sequence ID" value="KRC57064"/>
        <property type="gene ID" value="ASE19_04105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="43874at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1220">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014755">
        <property type="entry name" value="Cu-Rt/internalin_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019791">
        <property type="entry name" value="Haem_peroxidase_animal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010255">
        <property type="entry name" value="Haem_peroxidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037120">
        <property type="entry name" value="Haem_peroxidase_sf_animal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032812">
        <property type="entry name" value="SbsA_Ig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03098">
        <property type="entry name" value="An_peroxidase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13205">
        <property type="entry name" value="Big_5"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48113">
        <property type="entry name" value="SSF48113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="SSF49265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50292">
        <property type="entry name" value="PEROXIDASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Fibronectin type-III" evidence="5">
        <location>
            <begin position="1433"/>
            <end position="1526"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="5">
        <location>
            <begin position="1528"/>
            <end position="1630"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="277"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="453"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="296"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="4">
        <location>
            <begin position="465"/>
            <end position="479"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC57064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1836" mass="190138" checksum="ACC7B50BD1CD99C9" modified="2016-01-20" version="1">MQIVAQPVGADPGPVGSGFTVTTGDLAFILRQIKIAERHSLTRTPAHPCSTLLNQPGDGIPDAEQVPDILTTYGLRTVDGSCNNLKAGDEFVAAADQPFPRLTDPRFRPAENVPTGFGPPGPSSYAQKKGNVFDSQPRVVSNLVVDQTSTNPAAIAAAGFPVRSQGNPGLFPCTTDPDLTADPPVAGSPANCVPSHHTLFIPNVTTDVGLSPPYNSLFTFFGQFFDHGVDQTVKSGASVFVPLKADDPLRTLGPDGKASTGDEVPASQAFMVLTRAQNQPGPDGVIGDDPTTPADESADDVQNANNTDTPWVDQSQTYTSHASHQVFLRAYAVSSRPGPFGADNPASVSTGSFLEGLPAGQTYAGSPDGDGGIGTWAAVKKQAAERLGLLLVDMDVLNVPMLATDPYGKFIPGPARGLPQYVTRTGLVEGNLASPVAVPSNVLHFDTPFLADIAHNADPSPQDTDHNPGTPPVAPVPDPNDTPSADFASQAPGTYDDEMLNAHFSCGDGRCNENIALSTIHQVFHSEHNRLAAEIDQTLSNDTSPAGVAALASWKAIGVSGYGYGERLFQAARFITEMEYQHLVFEEFARKVQPAVRPFHVYSPDVNPAIEAEFAHAVYRFGHSMLDDDVARRNGDGSDNSVPLLTAFLNPPEYFDGGSAGTLNARQAAGSVVMGSSDQAGNELDEFVTETLRNNLLGLPLDLPAINMTRAREAGVPPLNDVRRQIFAETNDGQMAPYTSWSDFGQHLKHPESLINFVAAYGQHPTITGATTLVAKRDAARAIVDPKPTDTPPADAADFMFSTGAWSSNAAGVTTTGLDDVDLWVGGLAEITNLFGGLLGTTFNYVFQTQLEKLQDNDRFYYLARTPGLNLRTQLEGNSFSELIQRNTDNTNTLKADAFATADCKFQLANLAGTPAGFTANGATVADDPTTECDETALLLRKPDGTIQYRQFNSVDPSGINGQSVYQGTDGPDRVFGGNDNDTFWGGKGRDVIEGNGGDDVALGGEGDDILTDLGGADVLKGGPGNDAADAGIGDDIMMGGDGQDFLNGGANDNEEFAGPGNDYVILGQGADAAFGDGGDDWMEGGSGQDLIQGDHGAPFFDDPGETAAPGNDIMIGQVGENDYDAEGGDDLMAANATVDRNAGAGGFDWAFHQFDTVGADEDMAINNNLVGVPIQVVINRDRWQEVEANSGSRFNDVIKGTNDVPVDVGGAGFTGCDALDQAGVDRIAGLAVLVPPSIMTTPAASLDANAAAAGCPLTGNVWGDGEILIGGGGSDTITGRGADDIIDGDRSLNVRIDVHANVDGTGPVIGSTDLMERSYLAGNPKTLQQAVFDGTVDPGQLVMERALQPAPAGDRDASSPATSPAPAVDTAVFLGPRTSYTVTTVGDHLVVEQTGPLGAAQKALDGRDTLRNIERLQFTNDDGTTEIVVLAAPDAPTIGTATAGPSSADVTWTAATTGQPTSSFEIQVLSGGVQQGALRTAPSTDSSIHVTGLTNGTSYTFRVRAVGAFGTGPYSAESNAVIPANAAPGAPSIGTATAGINSASVTWSGPADTGGSPITGFRVQAIDAGNTVVGTTTVNNPSATSATVTGLAAGTSVRLRVAAINAVGTGADSAPSNAVTVQADTTAPTVTARNPGVNATNVPLATTVTATFSEPVQGVNGTTVRLRNTVTTAIIAATVSTSGNTVTLTPSAPLANNTQYTVTLTGGAAAIRDLAGNPLATTTWNFRTLPDVIVPTVLTRTPGPGATGVARASNAVVTFSEPVTNVSPLSFTLTNTTTNLRVAAVVTVSPDGRTATLNPVLNLQAGRTYRVNLTNAIRDLAGNRLAPLAWTFTTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI22</accession>
    <name>A0A0Q8VI22_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Exodeoxyribonuclease III</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14490</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA repair enzymes AP/ExoA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896965.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53538">
        <property type="protein sequence ID" value="KRC53538"/>
        <property type="gene ID" value="ASE19_14490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1893707at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008853">
        <property type="term" value="F:exodeoxyribonuclease III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004808">
        <property type="entry name" value="AP_endonuc_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037493">
        <property type="entry name" value="ExoIII-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43250">
        <property type="entry name" value="PTHR43250"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00633">
        <property type="entry name" value="xth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51435">
        <property type="entry name" value="AP_NUCLEASE_F1_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="5"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="290" mass="32319" checksum="E4CABFC8726E796F" modified="2016-01-20" version="1">MLRIATANVNGIRAAHRRGFDDWLATRGCDVVTLQEVRCPVDALPDGAFGDFHATYDAGQLAGRNGVAVLTRQPPAAVRTWADPDPARPLPRALRKHVTEGRYVEVDLADVPLTVASLYLPKGGLPAHLQDPKRMREAPDGGAKYQRKMDFLAGFARYLAATRKAAAAQGREFLLTGDLNVAHQPQDVAAFKRSNQVEGFLPEEREWIGTQINPRMLVDVVRQLHGDAPGPYSWWSWLGRAYDEDRGWRIDYHLATPRLARTARAFQVDRNHLGVRMSDHAPVVVDYDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI24</accession>
    <name>A0A0Q8VI24_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07950</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895432.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54000">
        <property type="protein sequence ID" value="KRC54000"/>
        <property type="gene ID" value="ASE19_07950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="370464at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.60.230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036625">
        <property type="entry name" value="E3-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024412">
        <property type="entry name" value="Lsr2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042261">
        <property type="entry name" value="Lsr2_dimerization"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11774">
        <property type="entry name" value="Lsr2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="54"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="86"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="116" mass="12058" checksum="9D611990BD69C667" modified="2016-01-20" version="1">MAQKVNIILVDDIDGSDATQTVNFGLDGANYEIDLNDAHAEALREALAPYLGHGRKVGRAGAPRRNGGGRAASAGSGAAGGASAKEIREWARDNGHAVPERGRIPADVREAYDAAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI26</accession>
    <name>A0A0Q8VI26_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amino_oxidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08335</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895493.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54061">
        <property type="protein sequence ID" value="KRC54061"/>
        <property type="gene ID" value="ASE19_08335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="13"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="436" mass="46303" checksum="C4B6FF547367EA65" modified="2016-01-20" version="1">MSKRFVVVGAGPAGLAAARVLAISGADVQVLESGSTPGGRTVSITRHGIRINAGATFFTSFYARCLDLSAQLGVDLISPQLHPGHPGDLRRFVTPAGQLVFEPGDLRSLLSFPLVPPLQKARLLATLLSHLPRRRLHIADLESLAALDDGESAEAWGHRVVGVEATDYVLRQTVEPFFYFQAADSSAAIARCLLRHAIRWSLLTPTGGMGSFCDALARGVDVHTGHRVRAVTRNASGYTVEHDHGSEQADGVVLAVPAPALRQIDVPLSDADRADIDTVRYEPCTKLLLGYDRPVRLDPPVLTPLGPGRHPIIGIRALSTAGAPDLIPAGREVATVLTMGWRARELAGQDEDAVAAALTSDAEMLGMNLPTADWRVVVPWDAATVVPTPGSLRRMAALGRRRRTGVVLAGDWTSGISTVESSVRSGEAAARSLLQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIG9</accession>
    <name>A0A0Q8VIG9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_08625</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FAD-binding monooxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895544.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54112">
        <property type="protein sequence ID" value="KRC54112"/>
        <property type="gene ID" value="ASE19_08625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="324612at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004499">
        <property type="term" value="F:N,N-dimethylaniline monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000960">
        <property type="entry name" value="Flavin_mOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020946">
        <property type="entry name" value="Flavin_mOase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00743">
        <property type="entry name" value="FMO-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000332">
        <property type="entry name" value="FMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00370">
        <property type="entry name" value="FMOXYGENASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="430"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="456" mass="50782" checksum="8D7590713D212253" modified="2016-01-20" version="1">MSASPRVAVIGAGISGLTTGKNLKDAGIGYDCFETSDRIGGNWAFGNPNGHSSAYRSLHIDTSKERLSFKDFPMPAHISTYPHHTEIKEYLDAYADEFGLLEHIRFRNGVEHAERKDGGGWTLRTQDGELREYDALVVANGHHWDPRLPDFPGEFTGESIHAHAYIDPTEPLDLRGKRIVVVGIGNSAADICSELSQKAWQNEVHISTRSGAWIVPKYIFGMPADKIAVTLPVIPLSWQRRALRPLPKLLFGDPVKYGLPQPNHHFLEAHPTQSNDLLFRLGAGDLKPKPNIERLDGRTVHFVDGSSVEADVIIYATGYNITFPFFDPDFLSAPDNVLHLYKRILEPAIDDLLFVGFGQALPTLFPFVECQARVVAAYLAGTYRPPSKEEMERVIAADEAKYTGHFNSSARHTQQLDYFDYDRDIRRRELPSGRRRAARSGGIDLAGRASEPVRAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIS9</accession>
    <name>A0A0Q8VIS9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11785</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894993.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53063">
        <property type="protein sequence ID" value="KRC53063"/>
        <property type="gene ID" value="ASE19_11785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1457558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd05154">
        <property type="entry name" value="ACAD10_11_N-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041726">
        <property type="entry name" value="ACAD10_11_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="33"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="340" mass="36012" checksum="71B720040139F480" modified="2016-01-20" version="1">MSAHQLPGLDLDRLAAWLPGAAPDAGAELGAELIAGGKSNLTYVLTDGTHEWILRRPPLGHVLATAHDMGREFRVMSALQGTAVPVPRTDAFCEDTDVLGAPFYLMERCAGTPYRDAAELVELGPERTRAISVELVDVLTALHRIDPAEVGLADFGRPAGYLGRQVARWKKQLEASYTRDLPAADELHALLAADVPPESATGIVHGDYRLDNVLIDADDRATAVLDWEMATLGDPLSDLALMLTYHRLGAGAAGAVVTDAALAPGFLGEDEIVAAYAAGSDRDLSRFGWYLGLAAFKLAAILEGIHCRHLAGQTVGEGFAGIGEAIHPLLDAGLSAIKEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIT3</accession>
    <name>A0A0Q8VIT3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RNA polymerase subunit sigma-70</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_04705</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894417.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55123">
        <property type="protein sequence ID" value="KRC55123"/>
        <property type="gene ID" value="ASE19_04705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="18"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="116"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="193" mass="21544" checksum="F25A2196BFA2632B" modified="2016-01-20" version="1">MKEPVDPQPQDLSWESIVEEHSDRVYRLALRLTGNRHDAEDLTQEVFVRVFRSLHTYTPGTFEGWLHRITTNLFLDQARRKQRIRFDALSDERAARIASASPAPELAYADQTFDDDVEAALASLPPDFRAAVVLCDIEGLSYEEIAEILGAKLGTVRSRIHRGRGLLRTALAHRAPTAGRTQYAGPVTPVGAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ10</accession>
    <name>A0A0Q8VJ10_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23965</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894014.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57380">
        <property type="protein sequence ID" value="KRC57380"/>
        <property type="gene ID" value="ASE19_23965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2090091at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012495">
        <property type="entry name" value="TadE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07811">
        <property type="entry name" value="TadE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="127" mass="12772" checksum="5C37CFB6B66F68B1" modified="2016-01-20" version="1">MTSRRRRRPGQRGAVTAELAVALPLLLAVTAGLVWLVAVAIAQVRTVDAARETARALARGDDPAAALAVGERVAPDGVALSVSRSEGRVVVRASGRMSGPGGLFSAIPGAPLDAEAVALVESTGGVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ50</accession>
    <name>A0A0Q8VJ50_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CARDB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_24000</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894021.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57387">
        <property type="protein sequence ID" value="KRC57387"/>
        <property type="gene ID" value="ASE19_24000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="308036at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011635">
        <property type="entry name" value="CARDB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07705">
        <property type="entry name" value="CARDB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360084" description="CARDB domain-containing protein" evidence="2">
        <location>
            <begin position="33"/>
            <end position="790"/>
        </location>
    </feature>
    <feature type="domain" description="CARDB" evidence="3">
        <location>
            <begin position="49"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="83"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="382"/>
            <end position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="790" mass="82663" checksum="78CC8EC4CB9D6DD7" modified="2016-01-20" version="1">MSSRSSLLTALAAASAIAATCPVLLPAPPAAAAAAAVRLPNAVTRGVSASSSSVTEGGALTIRHRVLDSGTATLRSTTTRFYLSRNTTSSRTARASSTSNPRSAPADVLLLGARAVPSLASRRQSSVLATTVGIPVGTAPGSYRVLACADDRGVAREGNETDNCTAATTSLRVTAAPGTGMMALPSYADTSPWLPDALSVTWLKAMCQHTFPAVRMTPATAISRLKAMLRAAGGADVLTRLAASGLADDAAQAQRLAATGALQDSPGLALAGLLRAHDLEPRIGNHLVNAAAVAVGMGRPNEALALLDGAAPLDLRRGAMGINPQYDALVVRGEALVLTGRLPAARTHLQAARVAEPRLSEADAGLAAIEACSGHDALAGRYARRSRQRTQQPKAATEDPTTPAPDRPAPDLDLSRARETALRGVVVPETPSQGVDLAPTYQAIDAGFQGEIQAALDRGAALQERLDGTAGLLEPAELDRRDGLIAQSSIALDTPALHDLESRLDTKIRLMADLRDDFFGGPGHEQDASIVVFSDQAAAACQGAPDSESCYWQELNDRCRPELGRIHTQWRGLLSEAQTVAGQYVADSSRIVSSYASNLADDAAHDLVLLQVTELERIAYSRLVEAALSFTNAETTWQQACVEKVETIPAPPTPGVPTPESDGACPELLRTTTFTLELGVSKLKVGCDKITQSFSAEAFPWVAGFVDLTWDIRAGQFTVFAGSKGQVKLGNALDLGFKSGIYLTSDGHGGIKDVGWRVGPSARLTEGIAEYTVAKSEIDISFLPVFRSTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJD2</accession>
    <name>A0A0Q8VJD2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Putative fluoride ion transporter CrcB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">crcB</name>
        <name evidence="10" type="ORF">ASE19_07695</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Important for reducing fluoride concentration in the cell, thus reducing its toxicity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the CrcB (TC 9.B.71) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895385.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53954">
        <property type="protein sequence ID" value="KRC53954"/>
        <property type="gene ID" value="ASE19_07695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1942863at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903425">
        <property type="term" value="F:fluoride transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00454">
        <property type="entry name" value="CrcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003691">
        <property type="entry name" value="CrcB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28259">
        <property type="entry name" value="PTHR28259"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02537">
        <property type="entry name" value="CRCB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="61"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="91"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="113" mass="11560" checksum="247CE11170E1D80D" modified="2016-01-20" version="1">MSDLRELLMVALGGGLGALLRYTLGHRYDDRWHHGTLAANTLASLVLGACAGWALDGSALALAGTGFCGGLSTYSSLMVQTRDLGPRRGAVYLVTTIALGLAAAALGFAVAQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJQ3</accession>
    <name>A0A0Q8VJQ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_08360</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895498.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54066">
        <property type="protein sequence ID" value="KRC54066"/>
        <property type="gene ID" value="ASE19_08360"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="37"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="124"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="229"/>
            <end position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="379" mass="40288" checksum="76ED24F92D11B37E" modified="2016-01-20" version="1">MDFGWSEGQRHAFEELLAAIGSWQDDRSVADSESDLRAARHDLASWGLLGLSVPERYGGGGLDVRDTALRVQAFGDACTDMGLVFATAAHLFACAMPIAEFGTEEARERFLPSLCSGALVAGNAMTESGAGSDLSKLGTRAVAVDGGYLLSGEKSFVTNGPIADLLVTYAQTDPTAGYLGITAFVVETRTPGIHLGPPMDKMGLDSASAGIVAFGDCFVPSDQVLGAIGQGTEVFNRSMRWERTCLFAGYVGSMDRLLRRTVEHAQTRSQFGRPIGDFQAVAHRIAEMKSRLEAARLLLYRACWAIDVGEHPDQHIALAKLAVSEAAVANALDAVAVFGAWGYLSDHGIEVAVRDATAGRIFSGTSDVQKLIIARELGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJY8</accession>
    <name>A0A0Q8VJY8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Enoyl-CoA hydratase 2</fullName>
            <ecNumber evidence="1">4.2.1.119</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Enoyl-CoA hydratase 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_08740</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a (3R)-3-hydroxyacyl-CoA = a (2E)-enoyl-CoA + H2O</text>
            <dbReference type="Rhea" id="RHEA:26526"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57319"/>
            <dbReference type="ChEBI" id="CHEBI:58856"/>
            <dbReference type="EC" id="4.2.1.119"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.119" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895562.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54130">
        <property type="protein sequence ID" value="KRC54130"/>
        <property type="gene ID" value="ASE19_08740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1380653at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03450">
        <property type="entry name" value="NodN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002539">
        <property type="entry name" value="MaoC-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039375">
        <property type="entry name" value="NodN-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01575">
        <property type="entry name" value="MaoC_dehydratas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC-like" evidence="5">
        <location>
            <begin position="11"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00029334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00030115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="16363" checksum="A5F11F195507E852" modified="2016-01-20" version="1">MKVYDGLAAFAQAEGDVLGTSDWMVVEQERIDRFAEATGDHQWIHVDPKRAKEGPFGATIAHGFLTLSLLPPLLNSLYRVDGVAMAVNYGLDKVRFMAPVRVDSKIRATAKVLTVTPLEGAVQAVLETTFEIEGSEKPAAVVQSIVRYFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK09</accession>
    <name>A0A0Q8VK09_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_23665</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893962.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57756">
        <property type="protein sequence ID" value="KRC57756"/>
        <property type="gene ID" value="ASE19_23665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="692375at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360112" description="Histidine kinase" evidence="7">
        <location>
            <begin position="23"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="9">
        <location>
            <begin position="195"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="272"/>
            <end position="481"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC57756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="484" mass="50850" checksum="EF8EDE5A250EE8D2" modified="2016-01-20" version="1">MGRMERFVPRSLASRLVVTAVALVAVVSLLVGTVTTIGMRAWLTDRLDGDVADSLHRITRPRDADDLPVVPPPNGSGNGRPFFGEVGSITLVYTDDQALGEVIKDSATGTAPVSLSADVVAELKEHATSTPTTVDLPGLGSYRIVAGETRLGLHAVAGLPTEDVDDATASLVRWEIALALLGIAAAALAGTAVVRRQLRPLTEVAATAHAVAELPLASGDIGVTERVPERLTDPRTEAGQVGLALNQLLAHVESSLSARHRSEQQVRQFVADASHELRTPLTTIAGYTELARRQGDAGTAAVALAKVQEEAGRMTALVEDLLLLARLDAGRPLADESVDLTRLLLEAVDDARVVSPEHRWRIVLPDDGEPIEVRGDGNRLHQVVTNLLGNARKYTPPGTVVTVTARPDGFDVHDDGPGFPADLVGTAFERFTRGDSSRHRSDGVGLGLALVQAIVAAHGGSVSLTSVPGDTVVRVRLGSAPQGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKR4</accession>
    <name>A0A0Q8VKR4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metal-dependent phosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04945</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894265.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54816">
        <property type="protein sequence ID" value="KRC54816"/>
        <property type="gene ID" value="ASE19_04945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1309717at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004013">
        <property type="entry name" value="PHP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003141">
        <property type="entry name" value="Pol/His_phosphatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02811">
        <property type="entry name" value="PHP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00481">
        <property type="entry name" value="POLIIIAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="POLIIIAc" evidence="1">
        <location>
            <begin position="3"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="289" mass="30368" checksum="13A4582288820FE0" modified="2016-01-20" version="1">MTIDLHTHSRVSDGTASPRDLVQAAARAGLDVVALTDHDTTLGWDEAAAAAEEAGIGLVRGIEVSTRFRDAGVHLLAYLPDPADAALQAELDRIVAGREDRVPGMLERLRDLGIPATEEALRESAGDSEITGRPHVADLLVRLGVVRDRDQAFAQYLSEGGPAYVDRYAADLVAMIALVRGAGGVPVIAHPWGRGSAHVLDEPGIVALKEAGLAGLEVDHLDHDAHARDRLRGIAERLDLVVTGSSDHHGTGKTGHDLGCETTAPAQLRRILDLAASLGSPTPLVGKAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLI5</accession>
    <name>A0A0Q8VLI5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07455</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917946.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53911">
        <property type="protein sequence ID" value="KRC53911"/>
        <property type="gene ID" value="ASE19_07455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1726638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="47"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="124"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="155"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="181"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="217"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="239"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="262"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="284"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="357"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="393"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="434"/>
            <end position="459"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="459" mass="47612" checksum="8E23123C05C80A05" modified="2016-01-20" version="1">MSNQSVAPAMSSSTGQETTGVVERRLVTVGLWGLTIALVAASSRGPIAAALALMVAGGVVALAVLGRERVAMAAMMLAFATSPMYKGVISPGGAESPISPTDLVFALAVLLLVPTLMRRSLNLPLTYIIGISLILVTGTLSTVFSPAPFISAVQFAQWLVMIVGLLGLLALWAPSWRTIDILLWCYVAGQMVSLAYAPVGGAVGNRNQGMANHPNEFGGAGVMAFAVLMYLWRRNDAVWYRVMVAGFAAASAGSVVISGSRAGVAVLAGLILMVPFVERSAFKGFLLAIGGALFVFSLPYIVGQSGEGSAITRLAGSADALGADKARTEAQKFGVDLFLQHPILGNGFADSIYAHNVLLAVAASIGIVGLLGYLLVLFTLARPIIGNHPNRRIGYAVWAFIAITPTFPALEDHTLWVPMAPAILLAVRAGSGGREDGDEAAEPDVTDTGAASAPRPVIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLJ8</accession>
    <name>A0A0Q8VLJ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cation-transporting ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07555</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895359.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53927">
        <property type="protein sequence ID" value="KRC53927"/>
        <property type="gene ID" value="ASE19_07555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2061355at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006825">
        <property type="term" value="P:copper ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00371">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000428">
        <property type="entry name" value="Cu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017969">
        <property type="entry name" value="Heavy-metal-associated_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006121">
        <property type="entry name" value="HMA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036163">
        <property type="entry name" value="HMA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00403">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00944">
        <property type="entry name" value="CUEXPORT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55008">
        <property type="entry name" value="SSF55008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01047">
        <property type="entry name" value="HMA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50846">
        <property type="entry name" value="HMA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HMA" evidence="2">
        <location>
            <begin position="4"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="68" mass="6799" checksum="52756497D617240F" modified="2016-01-20" version="1">MSTSQTFTVTGMTCGHCVASVTEEVQEIPGVEDVAVDLASGAVVITSAEPVAREAVEAAVAEAGYALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLW4</accession>
    <name>A0A0Q8VLW4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Sugar ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_06385</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895135.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55165">
        <property type="protein sequence ID" value="KRC55165"/>
        <property type="gene ID" value="ASE19_06385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1619224at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="54"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="96"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="145"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="192"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="253"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="58"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="285" mass="31274" checksum="0431A4D1059BF7DF" modified="2016-01-20" version="1">MLPAALALGLALGYPLVRQVVLSLQEFGLAQQFGQAPEWIGLGNYRELLGNGELWPVVLRTVAFCFVNAGLTFAIGLGLALLMTRMSKVTRVLTQCGLLLAWAMPVVAAMTVWQFLFDTEYGVVNWLLTALGGDFDGHSWLLDPWSFFLVATLVVVWMSVPFVAFTLYAALTQVPEDVVEAAQIDGAGPRQRFVHVVLPSIRPVLLVVVLLQVIWDLRVFTQIYTLQKAGGVSKDTNLLGTYVYTLGIKGGDFGMAASAAMFMLLLTVVLTAPYVRMMLRQERDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM82</accession>
    <name>A0A0Q8VM82_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphoglycerate mutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04960</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894263.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54818">
        <property type="protein sequence ID" value="KRC54818"/>
        <property type="gene ID" value="ASE19_04960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1122642at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="20232" checksum="D450E9224135D72D" modified="2016-01-20" version="1">MADSVTLVRHGATEWSVSGQHTSTTDLPLLPEGEQGAHDVAARIDPSAYAEVLTSPLRRARHTAELAGFPDAEVCDDLVEWRYGDYEGRTTASIREQVPGWTLWTHGAPGGETADEVAARCDRVVARVLAAPGPVLVFAHGHVLRVLTARWLGLPPSEGRLFRLDTSTVSVLGHERETPVLLRWNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN33</accession>
    <name>A0A0Q8VN33_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03775</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892948.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56931">
        <property type="protein sequence ID" value="KRC56931"/>
        <property type="gene ID" value="ASE19_03775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2078282at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360228" evidence="2">
        <location>
            <begin position="29"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="73" mass="7716" checksum="18286CAE19546553" modified="2016-01-20" version="1">MSGVLDVITCLAVACFLFPLGVWGRAHADGLVVDALPSEEREHRISVLRRGALTCQVVAGVMLGAAVLLITTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN44</accession>
    <name>A0A0Q8VN44_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06650</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894508.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55106">
        <property type="protein sequence ID" value="KRC55106"/>
        <property type="gene ID" value="ASE19_06650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="743737at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13519">
        <property type="entry name" value="VWA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="39"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="185"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="302" mass="32154" checksum="164EABCE321CD409" modified="2016-01-20" version="1">MRPGPLVVRRIAIAVTFVIVLLRPGFGEADVPTQLSDIDLLVVVDRTRSMAALDYAGTKPRIEGVRDDLDALADDLPGARFAMIAFGAESRLVLPFTSDTSAYEAAVDTIDLELPLEGDGSSAGRPAAQALEVLERAAERRPERRRVVVYVGDGEDTGTDTDDASFGPVADLVVGGVVLGYGTTDGARMPEDDEGGGSWVRDPATGEDAVSRADLGRLEDIAGELDVDFVHRTGPGGMDEVVDTFDASYVDGERGDGPPAAHDLTWLFGLLLLGLVLAELRDGWRAVWRSQDALLPREGGRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNJ8</accession>
    <name>A0A0Q8VNJ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Virulence factor Mce</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_23055</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892547.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58939">
        <property type="protein sequence ID" value="KRC58939"/>
        <property type="gene ID" value="ASE19_23055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="50"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="132"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC58939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="367" mass="40013" checksum="6ADED1656DA2BAB3" modified="2016-01-20" version="1">MSDNAGHLLNRRNAVTTAAAIKLGIFTAVSILVTGVLVVIMGNVGFGERNEYQAIFTNATMLEKGDDVRVAGVNVGEVKKVEHYQRSMAKVTFKVDAGVEMTTASRAEIRFLNLVGDRYLALEEGSGADGAKALADGATIPVGNTKPALDLTVLFDGFKPLFAALTPDQVNELSMNLVQVLQGEGGTVKSLLAHTASLTTSLANRDQLIGEVIGNLSTTLKTVDDRHEQLSSLVVELKDWMTDLARDRDTIGSSLDNISQLTVTVADLLRRGRPLLKEDIAALRDLAKLLNRPENRKNLGQLLDRMPETMDDQTRTGTYGSWYQYYICGVSATIKLPIIGEQALLKQITKYIENFSFKSTAPRCQDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNN9</accession>
    <name>A0A0Q8VNN9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alanine racemase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892515.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58971">
        <property type="protein sequence ID" value="KRC58971"/>
        <property type="gene ID" value="ASE19_23240"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ala_racemase_N" evidence="1">
        <location>
            <begin position="36"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="414" mass="43472" checksum="1DD69E6C3D10FDE0" modified="2016-01-20" version="1">MADVHHSFVARNRLWRRLGEAVQAWPEPLTTPTFVVDLDAFDANAADLVRRAGGKPIRVASKSLRVPALVSRALATPGFEGVLAYTLAEALWLVEQDVCDDVVVAYPSVDRAALAALVASPRAASRITIMVDDVAHLDAVDALRASTAVPVRIALDVDAGLRWGGQQVGPRRSPLFDVGAIAELARAVIDRPGFQLVGVMTYEGQVAGVPDDVPTQRAKSAVVRKIKQLSVAQLEVRRTAIGEALDALAGHGDFTGLTFWNAGGSGSLESSAADPVVTEVTAGSGLFGPTLFDHYRAFAPQPAAFFGLPVTRRPSADVATVHGGGLIASGPTGADRAPTPWAPAGLRLTGLEGAGEVQTPLVGTNAGTLGIGDLVWFRHAKSGEPFEHGRTVLLAQGDRFVEEVPTYRGHGVAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPC8</accession>
    <name>A0A0Q8VPC8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dihydrodipicolinate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_24040</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894029.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57395">
        <property type="protein sequence ID" value="KRC57395"/>
        <property type="gene ID" value="ASE19_24040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="803114at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045760">
        <property type="entry name" value="DAP_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19328">
        <property type="entry name" value="DAP_DH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAP_DH_C" evidence="1">
        <location>
            <begin position="145"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="354" mass="37751" checksum="C1DD2779898E0D47" modified="2016-01-20" version="1">MSAPRFDRPLRVIQWTTGNIGRRSAHAILSRPDLELVGVYAHGAEKVGKDAAELCDWPEPTGVLATDDIAALIALQPDACCYNPLWPVVDELVALLENGINVCTSAAWITGGKQTPEDRARIEKACARGNATIFGSGAHPGMTNVVAMVLSGSCERVDEIRITESVDCSTYESAGTQIAMGFSQDPDTPGLAESVRRESEVFAESAAMMADALGVQLDRMTFDVTFTPATGDSDLGFMTIPEGTVAGVMGHHRGWVGDRNVVSVGFNWTMGSHVEPPKPLAHGHVIQVFGLPNMRTVLHCLPPEDWTEPGFMGLGMIYTAMPVTNAVPYVVAADPGIVTLADLPPITGRVLARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQQ2</accession>
    <name>A0A0Q8VQQ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00130</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896853.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59487">
        <property type="protein sequence ID" value="KRC59487"/>
        <property type="gene ID" value="ASE19_00130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2033499at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="128" mass="14248" checksum="D48F44754B8DA451" modified="2016-01-20" version="1">MTEHAVVDRFLDAIERADIDHCDAWAPGATLAATVPNWRFHRTGADAIRETYRGWFADPGSFERLRREPVSGGEVVEYDLTWWEDGVPHLAHHVHLLTVADDRIVADVVLCGGRWSAGLLAEMEAADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQR8</accession>
    <name>A0A0Q8VQR8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01605</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896597.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59742">
        <property type="protein sequence ID" value="KRC59742"/>
        <property type="gene ID" value="ASE19_01605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1509304at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="17"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="145"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="203"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="248" mass="27908" checksum="9C9BA1046AFA27BC" modified="2016-01-20" version="1">MQGYDPQVTLAAITDNAVPIVVIGGISIVAMWVFFVEAARMSRRDRVAPMALWMTVLWWPHDGNYLLRFDDWFSTYDHWFMQLFWFAIIVTFVSETIYVVQTIRYGRDELSPGQSQGMHTLRILGALAAGVISWSLLKGSLEDPLFLLSFMGTLLWGLPSSMALLTRRRSAVGQSLLEWQAYCVMTFCYSIASIGFFEDDFFHSWQYVGICAAACTWSVAVVVQLRAAGAVRSSWTPVRAPGEVPAHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQS0</accession>
    <name>A0A0Q8VQS0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Fumarate hydratase class I</fullName>
            <ecNumber evidence="10">4.2.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_00635</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the reversible hydration of fumarate to (S)-malate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>(S)-malate = fumarate + H2O</text>
            <dbReference type="Rhea" id="RHEA:12460"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15589"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="EC" id="4.2.1.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 10">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4 10">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the class-I fumarase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.2" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896900.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59804">
        <property type="protein sequence ID" value="KRC59804"/>
        <property type="gene ID" value="ASE19_00635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1627779at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004333">
        <property type="term" value="F:fumarate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006091">
        <property type="term" value="P:generation of precursor metabolites and energy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004646">
        <property type="entry name" value="Fe-S_hydro-lyase_TtdA-typ_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004647">
        <property type="entry name" value="Fe-S_hydro-lyase_TtdB-typ_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036660">
        <property type="entry name" value="Fe-S_hydroAse_TtdB_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011167">
        <property type="entry name" value="Fe_dep_fumarate_hydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05681">
        <property type="entry name" value="Fumerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05683">
        <property type="entry name" value="Fumerase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001394">
        <property type="entry name" value="Fe_dep_fumar_hy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117457">
        <property type="entry name" value="SSF117457"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00722">
        <property type="entry name" value="ttdA_fumA_fumB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00723">
        <property type="entry name" value="ttdB_fumA_fumB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7 10" id="KW-0408">Iron</keyword>
    <keyword evidence="8 10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fumerase" evidence="11">
        <location>
            <begin position="50"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="domain" description="Fumerase_C" evidence="12">
        <location>
            <begin position="337"/>
            <end position="543"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR001394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF05681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF05683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC59804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="562" mass="60748" checksum="6A92961BD4050E55" modified="2016-01-20" version="1">MAEAEFRYSDLLPASHDDTPYRLITTEGVETVEGPDGQTFLKVDPAVIQQLTAEAMHDISHYLRPAHLAQLRKIIDDPEASGNDRFVALDLLKNVNISAGGVLPMCQDTGTAIVMGKKSEGVLTGADDAEWVSKGVYDAYTKLNLRYSQLAPLTTYEEKNTGTNLPAQIELYSTPSKDGKPEYKFLFMAKGGGSANKSFLFQETKAVLNPKRMLEFLDEKIRSLGTAACPPYHLAIVIGGTSAEFALKTAKYASAHYLDNLPTEGSMSAHGFRDLELEEEVFKLTQSFGIGAQFGGKYFCHDVRVVRLPRHGASCPVAIAVSCSADRQALGKITSEGVFLEQLETDPAQYMPDAGVADDISGGEVVKVDLNRPMSEILAQLSSHPVKTRLSLTGPLVVARDIAHAKIQERLDAGEEMPEYLKNHPVYYAGPAKTPEGMASGSFGPTTAGRMDSYVKSFQAAGGSMVMLAKGNRSKQVTEACGEYGGFYLGSIGGPAARLAQDCIKSQEVIEYPELGMEAVWKIQVEDFPAFIVVDDKGNDFFTDPSGAVTVPVSGIRVRSAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRA4</accession>
    <name>A0A0Q8VRA4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Deoxyribodipyrimidine photolyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_03840</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the DNA photolyase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892961.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56944">
        <property type="protein sequence ID" value="KRC56944"/>
        <property type="gene ID" value="ASE19_03840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="184000at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901363">
        <property type="term" value="F:heterocyclic compound binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097159">
        <property type="term" value="F:organic cyclic compound binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051716">
        <property type="term" value="P:cellular response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006139">
        <property type="term" value="P:nucleobase-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006950">
        <property type="term" value="P:response to stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036134">
        <property type="entry name" value="Crypto/Photolyase_FAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036155">
        <property type="entry name" value="Crypto/Photolyase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005101">
        <property type="entry name" value="Cryptochr/Photolyase_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002081">
        <property type="entry name" value="Cryptochrome/DNA_photolyase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018394">
        <property type="entry name" value="DNA_photolyase_1_CS_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006050">
        <property type="entry name" value="DNA_photolyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11455">
        <property type="entry name" value="PTHR11455"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00875">
        <property type="entry name" value="DNA_photolyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03441">
        <property type="entry name" value="FAD_binding_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00147">
        <property type="entry name" value="DNAPHOTLYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48173">
        <property type="entry name" value="SSF48173"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52425">
        <property type="entry name" value="SSF52425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00394">
        <property type="entry name" value="DNA_PHOTOLYASES_1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00691">
        <property type="entry name" value="DNA_PHOTOLYASES_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51645">
        <property type="entry name" value="PHR_CRY_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0157">Chromophore</keyword>
    <keyword evidence="3 5" id="KW-0274">FAD</keyword>
    <keyword evidence="2 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Photolyase/cryptochrome alpha/beta" evidence="6">
        <location>
            <begin position="3"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="437" mass="48900" checksum="C96FA1E3F2039DEE" modified="2016-01-20" version="1">MTSPTILWFRRDLRLGDHPALLAAAHDGPVLPVFVLDDALLAPSGRPRLAFLLRSLRALDRDLRRHGPGLVVRRGRPEEVLPALVEETGASAVHVSADFAPYGAARDARVEEALGEVPLVRTGSPYAVAPGRLATGSGSPYKVFTPFHKAWLDHGWRAPAPSDPGSVDWIGADGDDLPDEPDLGDVALPEAGEAAALARWEEFRGTPYEDVRDRPDVDETSRLSTYLRWGAIHPRTILAGIDARDPHAQTYRKELAWREFYAHVLHHWPESAREYFKPELKGLPYVTGRELTKRLEAWAAGRTGYPIVDAGMRQLLAEGWMHNRVRMIVASFLVKDLHVEWQHGARHFMEHLVDGDLASNQHNWQWVAGCGTDASPYFRIFNPTSQGKKFDPAGEYARRWIPELADPARGDYPEPIVDHAEQRAATLEAYQLLRHAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VT40</accession>
    <name>A0A0Q8VT40_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">SAM-dependent methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_22820</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892585.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58899">
        <property type="protein sequence ID" value="KRC58899"/>
        <property type="gene ID" value="ASE19_22820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1421660at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030391">
        <property type="entry name" value="MeTrfase_TrmA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002792">
        <property type="entry name" value="TRAM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010280">
        <property type="entry name" value="U5_MeTrfase_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11061">
        <property type="entry name" value="PTHR11061"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01938">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05958">
        <property type="entry name" value="tRNA_U5-meth_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51687">
        <property type="entry name" value="SAM_MT_RNA_M5U"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50926">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01231">
        <property type="entry name" value="TRMA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TRAM" evidence="5">
        <location>
            <begin position="17"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="331"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="207"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="260"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="304"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC58899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="377" mass="40380" checksum="3157882E1891141E" modified="2016-01-20" version="1">MSRTPGRRPRVRKARGASAVGRRFEAEVGPVAHGGHFVVRLPEEDGNRVVFVRHALPGERVVLEITDGTDGDKFWRGDAVEVLSASPDRVPAPCPYAGPGLCGGCDLQHVDLGAQRRLKADVVREQLRRVAKIDVDVEVEAVPGDQDGLRWRTRQRYVGLPDGRRGMRKHRSHEVVPVEECLLEAPTGPSYDVDGRAFEVADGGFWQVHPGAPSTLVDAVLGALRPQPGESALDLYAGVGLFSRFLLEAVGPTGRVAAIEGDGAASALSESNCPGITAHAGDVGEVLAGGLPPGWDRAHLVVLDPPRVGARRPVVEEIVRRAPRAVAYVACDPAALARDVAIFAEHGYRLASLRAFDLFPMTHHVECVALLEPVTSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTT2</accession>
    <name>A0A0Q8VTT2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23225</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892517.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58969">
        <property type="protein sequence ID" value="KRC58969"/>
        <property type="gene ID" value="ASE19_23225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1801166at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019692">
        <property type="entry name" value="DUF2581"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10756">
        <property type="entry name" value="bPH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="155" mass="16679" checksum="65CC1F000C894D34" modified="2016-01-20" version="1">MPALMSQQPVTAPALPHTWRPFGPRMAAAVFGVVLVAGFAWLWITFDDGTKASVNVYERGTVIAIVLGGLVLLNGLARSRVVATPEGLTIVNGYRTRRLAWSEVGTFRMPQGAPWPHLEQGEDSRIPIMGIHTSDGGRAATAVRQLRAVVAEHTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUQ7</accession>
    <name>A0A0Q8VUQ7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DAO domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896769.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59571">
        <property type="protein sequence ID" value="KRC59571"/>
        <property type="gene ID" value="ASE19_00620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="912110at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="5"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="331" mass="34832" checksum="47B8DE619D22FA3F" modified="2016-01-20" version="1">MRVEVLGAGIVGLTVADELVRRGHDVTVVDPRPALGASYAAAGMLSPTAEVWYGEEDLLRLGSASLRMWPELARRLGVELRQHGTLLVGYDAGDLQQVDRQVELLTRHGHDAQLLDRAGVRDREPALARVTGGALLPEEASVDPRAVCDALLARVPLVGVPRGADVTVVATGTSLPPPFSGLVTGVRGEILRLRTDDPPLRTVRGWAAGEPVYLVPRGGGGLVLGATSERHDGPPVVTAGGALRLLAAARQLWPALDRAELVEGTARDRPATADGLPLVGPSGVDGVLLAAGHHRHGVLLAPLTARLVADHLEDGHLEPVLDPRRAMEGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWF4</accession>
    <name>A0A0Q8VWF4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23085</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892541.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58945">
        <property type="protein sequence ID" value="KRC58945"/>
        <property type="gene ID" value="ASE19_23085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1811022at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="88"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="272" mass="29157" checksum="415FE29081A01CF8" modified="2016-01-20" version="1">MTRPTPRRPATSRGGTQRPRKIAGQAGATRPEDEATGTATTEDATVEPGVRLRKQAVVPTPPPALSGPDEPAGPVRPSVLARQKTTRVLIATLVLVALALGLEAAMLVVDKVGDDDPKVEAADNDGQVTVPDGRPVIADDLDVKEGVDAAAKAAQEIVSVDYKKYDEEVDDAADLMTSSFETQYRRTAGDIEDEFVANKTIVQAPVVAQAVVRANRTRLQALVFLNQAVVRERNGKPETVVTPYKVLVTMVHTDQGWFVDGLDTDGTRDKNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWJ7</accession>
    <name>A0A0Q8VWJ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22955</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58993">
        <property type="protein sequence ID" value="KRC58993"/>
        <property type="gene ID" value="ASE19_22955"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="144"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="194"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="234"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="27057" checksum="AD325427969C06FE" modified="2016-01-20" version="1">MTGRFKAGVVTTGELVKLAVESIQWGFSDIMARRFSWSEFLIQCWFMTRVALLPTILVSIPFGIITSVQIGAAANQIGAQSFIGAVNGIGVLRQGAPLVTSLMVAGAVGSAICSDLGARTVREEIDALKVMGISPIQRLVAPRILAALLVSVLLTVIVAMTAMTTAFVIVVGQGQISSGTYMDSFVGLAQPADFILAEFKAFIFGFVATIVAAHKGLTARGGPKGVADAVNQAVVLSVILLAVINVGLTQAYVMLFPGGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VY32</accession>
    <name>A0A0Q8VY32_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Molybdate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_00520</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial solute-binding protein ModA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896787.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59553">
        <property type="protein sequence ID" value="KRC59553"/>
        <property type="gene ID" value="ASE19_00520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1506401at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015689">
        <property type="term" value="P:molybdate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005950">
        <property type="entry name" value="ModA"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004846">
        <property type="entry name" value="ModA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01256">
        <property type="entry name" value="modA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360483" evidence="4">
        <location>
            <begin position="31"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>molybdate</name>
            <dbReference type="ChEBI" id="CHEBI:36264"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>molybdate</name>
            <dbReference type="ChEBI" id="CHEBI:36264"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="182"/>
        </location>
        <ligand>
            <name>molybdate</name>
            <dbReference type="ChEBI" id="CHEBI:36264"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>molybdate</name>
            <dbReference type="ChEBI" id="CHEBI:36264"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR004846-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="265" mass="26924" checksum="36948E52E008E44E" modified="2016-01-20" version="1">MNKTLRRTTLVGASALLALSLTACGDDSDAGDKGDKGDTEKTTLTVFAAASLTKTFEQLETTFEDAHPDVDVKLSFGGSSDLVAQITEGARADVFASADTKNMDKLVAADLDDGDPAEFATNTLVIAVPPGNPAGVEGLADLGDKDLDVVVCAPEVPCGSASVEVAKAAGVTLAPDSEEQSVTDVLGKVESGEADAGLVYVTDVKGAGDAVEGIEFPESGEVVNHYPIVGVKDSAHADLARAWIELVLGEGQAVFTSAGFGPPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZL7</accession>
    <name>A0A0Q8VZL7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_22840</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892581.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58903">
        <property type="protein sequence ID" value="KRC58903"/>
        <property type="gene ID" value="ASE19_22840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="643917at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="43"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="83"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="154"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="179"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="269"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="44"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="362"/>
            <end position="615"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="414"/>
            <end position="421"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC58903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="637" mass="67738" checksum="74073E1974BB9EAC" modified="2016-01-20" version="1">MSMEQIAWNQVYRSMHGPDEQRAFNRATARRIFSFARPHRRELIGFVVLSVVTSALAVATPVLAGRVVNAIVDGGRESLVTGLALAIAGLAVADAAFGLLARWLSARIGEGLILNLRTTVFDHVQRMPVAFFSRTRTGALVSRLNNDVIGAQRAFSTTLSGVVGNMVTLTLTLVVMLGISWQVTGLALVLLPVFVVPARRMGRRLAGIQREAADHNAAMGNQMTERFSAPGATLVKLFGRPAQESAEFSARAERVAQIGVRTAMVQTTFVTALTLVSALAVAVVYGVGGLAAIRGTLDAGDVVALSLLLTRLYAPLTSLASARVDVMSALVSFERVFEVLDLEPLIKDRPGAGGLPDGPVAVELDDVHFSYPSADKVSLASLEAVAVLDARGGEEVLHGVSLRAEPGQVVALVGSSGAGKSTLAQLVSRLYDVDSGVVRLAGHDVRDLTAEAIRGAVGMVTQDGHLFHDTIRGNLLLARPEADEAQLWDALSRARLADLVRSLPDGLDTVVGERGYRLSGGERQRLTIARLLLKQPRVVILDEATASLDSTSEAAVQAALAEALAGRTALVIAHRLSTIRAADLIAVVEDGRIVERGTHVELVHAGGRYQELYRTQFAEDTPVVAEMRGNLPSDRVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMD4</accession>
    <name>A0A0Q8UMD4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Ammonium transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_20115</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ammonia transporter channel (TC 1.A.11.2) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895947.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46172">
        <property type="protein sequence ID" value="KRC46172"/>
        <property type="gene ID" value="ASE19_20115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="562287at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001905">
        <property type="entry name" value="Ammonium_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018047">
        <property type="entry name" value="Ammonium_transpt_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43029">
        <property type="entry name" value="PTHR43029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00836">
        <property type="entry name" value="amt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01219">
        <property type="entry name" value="AMMONIUM_TRANSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0924">Ammonia transport</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="51"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="103"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="138"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="178"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="213"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="245"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="273"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="297"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="331"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="372"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="domain" description="Ammonium_transp" evidence="9">
        <location>
            <begin position="19"/>
            <end position="421"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="442" mass="45309" checksum="48B709E0BE7AAE9C" modified="2016-01-20" version="1">MLEPLLVTAAADTASGDTAWLLAAAALVLLMAPGLAFFYGGMVRSKSVLNMMMMVFGALAVVMVVWVLVGYSLAFGDDIGGGLLGDPTQYAGFRGMLEAVPDAPYPITIFAAFQGLFAVITVGLIAGAIADRTRFGTWLVFAALWTVLVYAPVAHWIFDFSAGEHVGGWMANELGALDFAGGTAVEINSGAAGLAAALVLGRRVGFGRDPMKPHNLTLVMVGAGLLWFGWFGFNAGSALAANNTAAIVFVNTLLAGCTGLLAWLAVERFRDGHATSFGAASGVVAGLVAITPSCGSVTPIGAMLVGLAAGSICALAVGLKYTFRYDDSLDVVGVHLVGGLVGTILIGLLASSDVTGVDGLLYGGGADQLGKQLVAAGATLAFSFTMTAALVWVLEKTMGFRIDPEDEVAGVDQVIHAETAYDLHATGGARPHFGHGTGSMHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UND4</accession>
    <name>A0A0Q8UND4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Protein kinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22080</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46506">
        <property type="protein sequence ID" value="KRC46506"/>
        <property type="gene ID" value="ASE19_22080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Protein kinase" evidence="1">
        <location>
            <begin position="13"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="512" mass="53321" checksum="3671E14165C26231" modified="2016-01-20" version="1">MGVTETAPTVRGYDVEARVGPDPDGHVFRARELATDRIVALRRLTPAEGAALAGRLDRLASLEEEHVVPVLGLVEESDATYLVTEWVTGATLAEILAAGNRMIVGQMLGVARGVLQGLAHAHQHGVVHGRIGPSHVLVDSDGRARLVDFGAGPPVPSYLAPEAVRHPGGELTRTADVYAVAAVVVHLLTGQPAGDQKRNLRSVDAALRPVLAKALSHAPTDRHQDAGELLAAITKAAKRAYGKTWATEAGVSAIVAPLVPPLVPLEAPAPPAKEQKRVKPDRPRRGLLKPLLIGGAAVAVLAGGAVAAFLVLDEDPAPERPSLRTDQFCADFDDDASAIAGTGAQSRFDSSGARGTPDGDAAARRASVSCWWGGGESGTVVSMTVGAASDVEASDVDSASRSAAIFDGVNQKTVKAAGLTWRPRYATRCEDVDRQGYDAAYACNEPVIAIPRKPADPGSVRVVLVTTVGDQALVCGTNRSVTTTIDEASYDGLVEDTEDLCAVVLAEVRRGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNF8</accession>
    <name>A0A0Q8UNF8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_22185</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mo-bis(molybdopterin guanine dinucleotide)</name>
            <dbReference type="ChEBI" id="CHEBI:60539"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896292.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46524">
        <property type="protein sequence ID" value="KRC46524"/>
        <property type="gene ID" value="ASE19_22185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="50471at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008863">
        <property type="term" value="F:formate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02787">
        <property type="entry name" value="MopB_CT_ydeP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02767">
        <property type="entry name" value="MopB_ydeP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037951">
        <property type="entry name" value="MopB_CT_YdeP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010046">
        <property type="entry name" value="Mopterin_OxRdtse_a_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041953">
        <property type="entry name" value="YdeP_MopB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43105:SF4">
        <property type="entry name" value="PTHR43105:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01701">
        <property type="entry name" value="Fdhalpha-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Molybdopterin" evidence="5">
        <location>
            <begin position="116"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="domain" description="Molydop_binding" evidence="6">
        <location>
            <begin position="646"/>
            <end position="753"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="764" mass="83702" checksum="0C72834ED59957B0" modified="2016-01-20" version="1">MRANEDPQDDLKVSPPKKYAAGVPAVAHAMEYSLAQAGPRRTLLTLLSLNQTEGIDCPGCAWPDPQHRHKNEYCENGAKHVNDEATTRRVTREFFAEHPIDELDRKSDMWLNHQGRLTEPMVRRPGGTHYEPIAWDEAFGIIADELNGLASPDEAMFYTSGRLNNEAAFLLQLFSRAYGTNNLPDCSNMCHESSGSGLGETLGIGKGSVSLDDIHESDLVFVVGQNPGTNHPRMLSALEETKRNGGRVIAVNPLPEAGLMRFKNPQKPSGVVGRGTPIADQFLKIRPGGDLALFQMLNRLLLESEEAAPGTVLDHEFLAAHTIGYDDLAAHLRTVTWEHVLEATGLERAEIEAVHREVLAAKSVIVCWAMGLTQHKHGVPTIREVVNFLLLRGNLGRPGAGVCPVRGHSNVQGDRTMGIWERVPDAFLDALAAEFDFEPPREHGYDSVAGVRAMRDGKAKVFVGVAGNFVRAMSDSDVTEAALRSCSLTVQVSTKLNRSHTVCGETALILPTLGRSDRDVQESGEQFVTVEDSMSEVHQSRGRLAPASPHLLSEVAIIARLARRTLAADNPGSSIPWEDFEKDYALVRDRIARVVPGFEDFNARVAVPGGFRLPNPVNEHRYPTPSGKAVLTCNPLEMIETPPGHLVLQSLRSHDQWNTIPYAMNDRYRGIHDARRIVMVNPDDLAELGIEDRSLVDLVSIWTDGTERRADGFRVVAYPAARGSAASYYPETNVLVPLDSVAEVSNTPTSKGVIVRLEPVVPAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNT6</accession>
    <name>A0A0Q8UNT6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21910</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896248.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46479">
        <property type="protein sequence ID" value="KRC46479"/>
        <property type="gene ID" value="ASE19_21910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1753593at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010767">
        <property type="entry name" value="Phage_CGC-2007_Cje0229"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07087">
        <property type="entry name" value="DUF1353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="176"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="216"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="247"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="278"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="303" mass="32734" checksum="F362511C17F5D789" modified="2016-01-20" version="1">MKPVEVAAEPGRFFDGGTDGPDPADRPDPASPPRIVLERVERGDVHRRTERFRLLRRVAYRDREYGVLLVPADLGGFESDLTSVPTIFTWLVPRTGRHLPPALLHDGLVHGPHEPASYLSEEGHVLDRVAADRVFRDAMRDTDTGPVRSWLVWSAVTLGTIRGGSTAWSKARHARYLATAIGTLLAITLLGVLATLDLFDVVDVLPWMGERPLLEELVGGLAAAVVVPLLLGLTWGRFAVAGCVSGIALAVLLHVTVVLALISLGYQAAEWVARRRPLAAAATAGVVLIALLALVILFIGPFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8US71</accession>
    <name>A0A0Q8US71_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_21970</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the GMC oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896259.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46489">
        <property type="protein sequence ID" value="KRC46489"/>
        <property type="gene ID" value="ASE19_21970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="543793at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012132">
        <property type="entry name" value="GMC_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11552">
        <property type="entry name" value="PTHR11552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000137">
        <property type="entry name" value="Alcohol_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00623">
        <property type="entry name" value="GMC_OXRED_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00624">
        <property type="entry name" value="GMC_OXRED_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0274">FAD</keyword>
    <keyword evidence="4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="5">
        <location>
            <begin position="81"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="6">
        <location>
            <begin position="253"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="218"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000137-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS00623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS00624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="523" mass="57031" checksum="C8AFC19C114FE460" modified="2016-01-20" version="1">MPEYDYIVVGSGSGGAVLAGRLSEDPGTSVLVLEAGGRSRPNLNVQIPAAFAKQFHTKVDWDYESEPEPHLDGRRIYQPRGKMLGGTSGMNAMIYIRGNRADYDGWAKAGADGWSYDEVLPLFRRMESNSRGAGEFHGASGPQYVEDAPDPRGGSHRLVDAMAAAGIGRTDDFNGAQQEGASMYQRFTRRGQRWTTYDGYLAPHRKQPHLTITPKALVHRVLIENGRATGVVARVGGQLQTFRARREVVLSAGAYNTPHLLMLSGIGPAAHLAEHGITTVVDNPHVGAHLMDHPMYMVNWDTSDTDNLSFAEKPAQLAKYLLRRKGMLTSNIGEAGAFFPTSVADDAPAMQMIGAPVYFWEHGAATYDGHAFAIGLSLVGARSEGWVRLASADPERKPLVCNNYFEHPDDMQSMLDGIERAREVLTAPALRTRHEIHPGKRFGTRKELEEAVRTGVEHTYHPSCTARIGVEGEGVLDANLRVRGVDGLRVVDASAMPRVTHGNTHAPTMLIGEKAADILRRGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUI6</accession>
    <name>A0A0Q8UUI6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PKD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18250</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893261.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48860">
        <property type="protein sequence ID" value="KRC48860"/>
        <property type="gene ID" value="ASE19_18250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="99072at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022409">
        <property type="entry name" value="PKD/Chitinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000601">
        <property type="entry name" value="PKD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035986">
        <property type="entry name" value="PKD_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_supfam"/>
    </dbReference>
    <dbReference type="SMART" id="SM00089">
        <property type="entry name" value="PKD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49299">
        <property type="entry name" value="SSF49299"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="SSF50998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50093">
        <property type="entry name" value="PKD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359432" description="PKD domain-containing protein" evidence="1">
        <location>
            <begin position="27"/>
            <end position="965"/>
        </location>
    </feature>
    <feature type="domain" description="PKD" evidence="2">
        <location>
            <begin position="669"/>
            <end position="737"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="965" mass="98815" checksum="D5DBA49BA9DB5C0B" modified="2016-01-20" version="1">MTARLTILSLLIGTAVINGLLVPATASPAAAPNRAAAAAVTVAAPQSGRIVDDDPAGFTPHVMDGAVFSMTQVGDVIVVGGSFTRVRNAGTTTDIPRRNLFAFNAATGQVSTGFAPDPNGTVYALESAADGQSVYVGGSFGTITSGGSTVSVSNLFRADIASGSRIAQFQTGTLNGSVRDLALSGSRLWLAGKFTHVQGKARRALATVDASTGVVDAYYDRVIAGVHRADSVTNVLKIALNPARTRLVAIGNFDTVDGVRRHQLAVLDLGTDAATLADFRTTQFESPCSASFETYMTDVNWSPDGRFFVVSTTGAYGGYAASMAGTSGCDVVTRFEASASGAAVTPTWTAYTGGDTTWTIEVTDDVVYAGGHQRWQNNPARGDAADEGAVSRPGIAALSTRTGMPYSWNPTRTLGAGVRDMVATSAGLFVGSDTDVFAGETHRKVAFLPLSSGRVLPPTQDATLPGDVFRVATSQSQLLRRGFDGNQVTSSSDAPNGTGWGTSVGAFMVDGDLYTAYANRTLTRRTFDGTTYGTAVTIDTADQLVYQDDWHNGDVPLITTLFYDRGWIYFTELGSSQLFRRGFEPESGVVGQQRFAVNSVTGVSYSSMRGAFVAGGQLYFAASNGSLSRAQWSAHGAVAGTATTIAPTGSGWSSRAMFLYQGPAIPPPVNAAPTASFNVTCSGLSCAFDATASTDSDGSVQGYAWDFGDGQQGQAGPTTTHTYAAGGPVTVSLTVTDGELTGTTTRTAQPAGAASPIAAVASASTAGNRLSHRTTVPAAVQPGDLLLAFLVANTTTPSYPAPAGWTEIENADAGTKAAGRLYVRIAGTSDAGSPVTVTSSGYAKSVLTVAAYRGVHLTQPIGDSAVAVQSTAATSHVTPAVSAPDATRWLVSYWADKSTDSTGWTLPGGVVQRSAATGTGSGHITGVLGDSGGPVPAGTRGGLTAVADASGTAAVTFSVLVAPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV20</accession>
    <name>A0A0Q8UV20_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptide deformylase</fullName>
            <shortName evidence="2">PDF</shortName>
            <ecNumber evidence="2">3.5.1.88</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Polypeptide deformylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">def</name>
        <name evidence="3" type="ORF">ASE19_19385</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + N-terminal N-formyl-L-methionyl-[peptide] = formate + N-terminal L-methionyl-[peptide]</text>
            <dbReference type="Rhea" id="RHEA:24420"/>
            <dbReference type="Rhea" id="RHEA-COMP:10639"/>
            <dbReference type="Rhea" id="RHEA-COMP:10640"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:49298"/>
            <dbReference type="ChEBI" id="CHEBI:64731"/>
            <dbReference type="EC" id="3.5.1.88"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="2">Binds 1 Fe(2+) ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the polypeptide deformylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.88" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893453.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49051">
        <property type="protein sequence ID" value="KRC49051"/>
        <property type="gene ID" value="ASE19_19385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1649129at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042586">
        <property type="term" value="F:peptide deformylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00487">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00163">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023635">
        <property type="entry name" value="Peptide_deformylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036821">
        <property type="entry name" value="Peptide_deformylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10458">
        <property type="entry name" value="PTHR10458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01327">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004749">
        <property type="entry name" value="Pep_def"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01576">
        <property type="entry name" value="PDEFORMYLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56420">
        <property type="entry name" value="SSF56420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00079">
        <property type="entry name" value="pept_deformyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC49051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="181" mass="19813" checksum="05E7828F0D482829" modified="2016-01-20" version="1">MAIRPIRLFGDPILRKPALEVVEFDAELRQLVTDLTDTMLDAPGAGLAAPQIGVGLRVFTWYVDGEVGHLVNPVLELSDEKQDGPEGCLSLPELTYDCLRALSVVANGFNMHGDPVSIQGSELLARAIQHETDHLDGILFIDRLDDAGRKAAMREIRESEWFGLEKPTIKLSPHATGGFGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV58</accession>
    <name>A0A0Q8UV58_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17290</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893808.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49082">
        <property type="protein sequence ID" value="KRC49082"/>
        <property type="gene ID" value="ASE19_17290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1344131at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021491">
        <property type="entry name" value="DUF3145"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11343">
        <property type="entry name" value="DUF3145"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="165" mass="17939" checksum="1C6DD07FB33B565A" modified="2016-01-20" version="1">MSATRGVFYVHSAPSALCPHIEWAVGGVLGVPVNPHWTPQPAQSGSYRCEFSWSGKVGAAAEMASALRGWNHLRFEVTEEPTSGTEGARFSYTPDLGVFHAVTGIHGDIVIPEDRLKAAVVRSALGEVTLEIEIDKLLGKPWDDELETFRHAGEGAPVRWLHQVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV67</accession>
    <name>A0A0Q8UV67_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4126 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22480</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896428.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46659">
        <property type="protein sequence ID" value="KRC46659"/>
        <property type="gene ID" value="ASE19_22480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1828070at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025196">
        <property type="entry name" value="DUF4126"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13548">
        <property type="entry name" value="DUF4126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4126" evidence="2">
        <location>
            <begin position="4"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="203" mass="21525" checksum="B2C681AEE62F4197" modified="2016-01-20" version="1">MESLALAFSSGWASGINSYLVVLVLGLADRAGSFEQVPDVLGRWEVLAVAAFMYAFEFVADKIPYVDSAWDVVSTAIRPVVGGVVGVLIAGDSTSVNELVGGVVGGGSALASHSVKTGTRMAVNTVPEPFSNIGISLGEDVAVLAVVWFAVEHPVPAAAIALVLLVAGLALLWLAWRWVRRGWARFRAWRERRRGPVPSDPLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVS2</accession>
    <name>A0A0Q8UVS2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_19645</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46093">
        <property type="protein sequence ID" value="KRC46093"/>
        <property type="gene ID" value="ASE19_19645"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="155"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="182"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="268"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="30"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="357"/>
            <end position="591"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="390"/>
            <end position="397"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="598" mass="64460" checksum="8C527EAECDE8D19B" modified="2016-01-20" version="1">MQGGNAVEPVIERPLGALWQRYRRYRGRFALAVLMSTVNKVADVVPELLIGAAVDVVVRGSGSFVADLLGVDSRHSQLAWLAAINVVVWVVESASEYAAAVLWRGLSQGIEHDLRVEAYDHAQHLHLGWHESRASGSTLATLNDDVNQLERMLDVGLPAILQTALNVLLVGIVFAIASWQLLLYAFLPIPVIILGSLVFQRRLEPLYDRVRGAVADLSGALSANLAGIATIKSFTAEERERARVEQVSAAYRDTNLRAIRASAAFVPLVRMAILAGFTCTLLLGGWATLDGELELGLYSVLVFMTQRLLWPMTDVAEVLDLYQRGRASTARILALLAEPVTVPAGTRALDRPVRGRVELRGVRAGYADGPDVLHDLDLVVPAGETHAVVGSTGAGKSSLLRLVLRFDDPRAGQVLLDGTDVRELDWDSLRGSIGYVAQDVYLFSGTIAENIAYGRPDATPAEVRAAAEAAAAADFIDRLDGGYDAWVGERGVTLSGGQRQRIALARALLRDPALLVLDEATSAVDNETEAAIQKSLRRAGERCTTIVVAHRLSTVRHAHRIWVLDGGRVAEAGTHDELVAADGAYAALWRVQTGEAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWH3</accession>
    <name>A0A0Q8UWH3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Adenylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20910</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the adenylyl cyclase class-3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896394.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46624">
        <property type="protein sequence ID" value="KRC46624"/>
        <property type="gene ID" value="ASE19_20910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1635706at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004016">
        <property type="term" value="F:adenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009190">
        <property type="term" value="P:cyclic nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07302">
        <property type="entry name" value="CHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001054">
        <property type="entry name" value="A/G_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00211">
        <property type="entry name" value="Guanylate_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00044">
        <property type="entry name" value="CYCc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50125">
        <property type="entry name" value="GUANYLATE_CYCLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Guanylate cyclase" evidence="2">
        <location>
            <begin position="163"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="34885" checksum="3D48367C6A562032" modified="2016-01-20" version="1">MSENDPELTFLGDEPQLTAADVAERAGIPLERARRLWRTLGFPERGDARAYTDADVHALQLMVDLLGEGIIDFDVALNVARGVGLSMARLADWEVGELVHHVDEAYVEQHGGDGDASAWVVERFGSRFEDLLIYAWRRHLTAAVSRMQSVRAIDADPHTTDLSVGFADIVGFTALSNEVSRERIGELVEIFEARCGDVITRERGRLIKSMGDAVLFVNDDPMAAFTTAEGIINVIGRDPRMPDVRVGLASGGVVLRLGDVFGPPVNLAARLTQVARRNRIIVDHATADLLPADQIESRPLPPRPVRGFGVVEPVAVRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UX38</accession>
    <name>A0A0Q8UX38_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21715</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896215.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46445">
        <property type="protein sequence ID" value="KRC46445"/>
        <property type="gene ID" value="ASE19_21715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2090895at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="80" mass="8586" checksum="F90B71A316D5457C" modified="2016-01-20" version="1">MDISTTTTMLAQLCRQLHALAKAEEDTAAEEAARVPYWSSCPSSVQAHREAARSLRATAHSVEARIGIYVPSAYPAQLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXM4</accession>
    <name>A0A0Q8UXM4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15520</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893497.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50028">
        <property type="protein sequence ID" value="KRC50028"/>
        <property type="gene ID" value="ASE19_15520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1356861at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="267" mass="28277" checksum="6C5200FEAD8A3D05" modified="2016-01-20" version="1">MTAMRPEQPTPDYVPGHDLLAGKVVVVTAAAGAGIGAAVVRRVLEEGAKAVVFSDTHERRLAEAEEALAAEFGADRVRQLVCNVTKEEDITALLDAAEEFGGVDIMINNAGLGGTDSILEVTDETWNRVIDITLTGTMRATRAAGQRFVAAGRKGVIINNASVIGWRAQEGQAHYAAAKAGVMALTRCSALDLAPHGIRVNAVSPSLAMHPFLEKVTSPELLVELKQREAFGRAAAPWEVANVMVFLASDYSSYLTGEVISVSSQHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXQ6</accession>
    <name>A0A0Q8UXQ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Acetyl-CoA acetyltransferase</fullName>
            <ecNumber evidence="6">2.3.1.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_15530</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.9" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893499.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50030">
        <property type="protein sequence ID" value="KRC50030"/>
        <property type="gene ID" value="ASE19_15530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="550338at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003985">
        <property type="term" value="F:acetyl-CoA C-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="5">
        <location>
            <begin position="265"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="2">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="343"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="388" mass="40652" checksum="795305A5F3EAD6DF" modified="2016-01-20" version="1">MAEAYIIDAVRTAVGKRGGALAGVHSADLAAHSLAALVERTGVDAGAVDDVILGCCDTIGSQAGDVARTAWLVAGLPDHVPGVTIDRQCGSSQQAVHFAAQGVLSGTQDLVVAGGVQNMSAIPISAAMLVGQQYGFSTPFAESPGWLKRYGDQEVSQFRSAEMIAEKWDISREEMEAFALASHTRARTAIAEGRFANEIVPFTLEDGTAFDTDQCPRDTSLEKMAGLEPLGPGGRITAAVASQICDASSAMLIASEQAVKDHGLTPRARIVHLSVRGDDPVWMLTGPINATRHAVERSGIAIDDIDLFECNEAFASVALAWMKETGAPHEKVNVNGGGIALGHPIGATGTRLMTTMLNELERTGGRYGLQTMCEGGGQANVTIIERLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXS0</accession>
    <name>A0A0Q8UXS0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Rieske-type oxygenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_15765</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893870.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50076">
        <property type="protein sequence ID" value="KRC50076"/>
        <property type="gene ID" value="ASE19_15765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="691776at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008203">
        <property type="term" value="P:cholesterol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045605">
        <property type="entry name" value="KshA-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19298">
        <property type="entry name" value="KshA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0753">Steroid metabolism</keyword>
    <feature type="domain" description="Rieske" evidence="8">
        <location>
            <begin position="25"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00030944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC50076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="385" mass="43675" checksum="2F3238115D3F50DF" modified="2016-01-20" version="1">MSDTLAQNVRRVDQGTEPIRFARGWHCLGLASDFADGKPHAVHGFGTKLVVWQDSKGKLNVLDGYCRHMGGDLTQGEVKGDNVACPFHDWRWGGDGKCKEIPYARRVPLRARTQRYETAVRNGQLLIWNDPEGSAADHAILPPELPDVMTDKYTPWSWHTREINGSHCRELIDNVADMAHFYYVHFAFPTSFRNIFDGHTATQFMESKGRPDTMGGGYGDENSTLKSEATYYGPSYMINWLEVDYKGFVTEVILINCHIPTGPDSFTLQYGISVRKPEGLDEKTCAYIAERYTESFGDGFLQDVAIWENKVAVQNPLLCEEDGPVYQLRRWYEQFYVDVADIKPEMVDRFEFEVDTTKANEYWHAEVAENLAKRAAEEASAPADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYF6</accession>
    <name>A0A0Q8UYF6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17000</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893762.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50293">
        <property type="protein sequence ID" value="KRC50293"/>
        <property type="gene ID" value="ASE19_17000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1597938at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010406">
        <property type="entry name" value="DUF1003"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06210">
        <property type="entry name" value="DUF1003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="17094" checksum="5E751CD1F0FB974D" modified="2016-01-20" version="1">MSRPATSAHRVPGATRHPGVERYFQRRAEDWQARLADAITAFAGSMPFVWIHAAGFVAWMLVAERSPWPTLTLVVSLEAIFLSTFVMIGQNRQAEVQRAKADHDFVEQELELKTNTELTRQIHTLTQELHRRLLDVDGPPPTGRTLEVVEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYJ4</accession>
    <name>A0A0Q8UYJ4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">Alanine dehydrogenase</fullName>
            <ecNumber evidence="2 4">1.4.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_17225</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the reversible reductive amination of pyruvate to L-alanine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>H2O + L-alanine + NAD(+) = H(+) + NADH + NH4(+) + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:18405"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="EC" id="1.4.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid degradation; L-alanine degradation via dehydrogenase pathway; NH(3) and pyruvate from L-alanine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the AlaDH/PNT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.1.1" evidence="2 4"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893800.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50331">
        <property type="protein sequence ID" value="KRC50331"/>
        <property type="gene ID" value="ASE19_17225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="673280at2"/>
    <dbReference type="UniPathway" id="UPA00527">
        <property type="reaction ID" value="UER00585"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000286">
        <property type="term" value="F:alanine dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042853">
        <property type="term" value="P:L-alanine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd05305">
        <property type="entry name" value="L-AlaDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008141">
        <property type="entry name" value="Ala_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007886">
        <property type="entry name" value="AlaDH/PNT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007698">
        <property type="entry name" value="AlaDH/PNT_NAD(H)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42795">
        <property type="entry name" value="PTHR42795"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01262">
        <property type="entry name" value="AlaDh_PNT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05222">
        <property type="entry name" value="AlaDh_PNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000183">
        <property type="entry name" value="Alanine_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01002">
        <property type="entry name" value="AlaDh_PNT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01003">
        <property type="entry name" value="AlaDh_PNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00518">
        <property type="entry name" value="alaDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0520">NAD</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AlaDh_PNT_N" evidence="9">
        <location>
            <begin position="4"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="AlaDh_PNT_C" evidence="8">
        <location>
            <begin position="152"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="5">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="5">
        <location>
            <position position="273"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="242"/>
            <end position="243"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="270"/>
            <end position="273"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="282"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="301"/>
            <end position="304"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR000183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000183-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000183-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000183-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM01002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM01003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC50331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="374" mass="38915" checksum="9036E57BECFA4E8E" modified="2016-01-20" version="1">MRVGVPKEVKNHEYRVAITPIGVHELVAHGHEVVVQAGAGLGSSIDDADYVAAGATIVATAEEAWGTDGGVDLVLKVKEPVAEEYHRIREGQTLFTYLHLAADKPLTQELLAREVTGIAYETVQLPSGALPLLYPMSEVAGCLAPQVGAHSLMKAQGGRGVLMGGVGGVANAKVVIIGAGVSGQNAANIALGMGADVTLLDTDLDKLRMSFWRYNNRVHGLASSKLTLEQQVMEADLVIGAVLIPGAAAPKLVSNDLVSRMKPGSVLVDIAVDQGGCFEDTRPTTHADPTYQVHNSTFYCVANMPGAVPNTSTYALTNATLPYVVALADKGWQEACRADASLALGLNTHAGRLTNAPVGEAVGITAVSLAEALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYL1</accession>
    <name>A0A0Q8UYL1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Polyketide cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15980</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893877.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50347">
        <property type="protein sequence ID" value="KRC50347"/>
        <property type="gene ID" value="ASE19_15980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1719670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="18553" checksum="A05D0DF21D767F06" modified="2016-01-20" version="1">MHPCEHVGIDFVDRAPYRYSNSVDLAITPGELFEVLGDAAAWPRWAKVITDVEWTTPEPRGVGTRRMVTMRGGLVGDEEFLAWEPPTMMSFRFNESSTRTVKAFAERHDVVPTPEGCRLTWTLSLDVRGPSRLGMPLGRPVMNAVFRRLLRNLRTYTDQRFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYN2</accession>
    <name>A0A0Q8UYN2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_17780</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893179.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48777">
        <property type="protein sequence ID" value="KRC48777"/>
        <property type="gene ID" value="ASE19_17780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1283908at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="PTHR30472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="75"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="105"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="132"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="157"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="248"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="318"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC48777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="345" mass="34726" checksum="42F9C841934ECAEC" modified="2016-01-20" version="1">MSTATLQAITRIRRRSRLRTLAVVLVGAGACLGLLLVTFGLGAAGVPPERSFPALFGVGDRFDLLVVRELRLPRGAAAVVAGVAFGLAGALFQSTLRNNLASPDILGISGGASLGAVTAVVGYGASGSTVNLAAFAGALAAAVAIWALAWRGGLHGIRFVLVGVGIAYLCGSLISWRLSEADLREGGTVLLWTVGSVADVRDGTLGLLTLGVLVLAMVTVPVAREQRALALGDEHAQGLGLGPTRSRVLALLIGVALVALATAVAGPIAFVALVSPAIARRLVDDGGPALLTSAVVGAALAMSADVIGQYALPGSLTAPVGIVTGLVGAPYLLWLLARSDRKGQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYV1</accession>
    <name>A0A0Q8UYV1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Stearoyl-CoA 9-desaturase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_18145</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893242.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48841">
        <property type="protein sequence ID" value="KRC48841"/>
        <property type="gene ID" value="ASE19_18145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1885467at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="6">
        <location>
            <begin position="42"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="5">
        <location>
            <begin position="281"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC48841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="363" mass="40118" checksum="4D71045697DEC05E" modified="2016-01-20" version="1">MTDTAPARPRLSWERVRRAADQLTTPLLPDDYLTLLNPLWSSRELRGRVERVIRETDDAATLVIRPGWGWRYLHRPGQFVGIGVQVHGKYHWRSYSVSSPPVRSGRSLAITVRAMPEGFLSEHLVNGLEPGTIVRLATPSGDFVLPDPPPARSLFLVGGSGITPVMSMLRTLDRRGSMADVVLHYSSTTPERMIFRDELRALHDKHPRLTLVERHTDTEGILDLADLDAVVPDWRERETWACGPAPMLDAVEDCWRRAGLEEQLHLERFSLAVTGDGGEGGEIVFQNSGKRAEVDGATTVLDAGERAGVGMPYGCRVGICHTCTVTKISGTVRDLRNGNDFDQPNEQVQTCVTVPVGSCVLDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ19</accession>
    <name>A0A0Q8UZ19_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cytochrome C peroxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17255</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TlyA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893804.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50335">
        <property type="protein sequence ID" value="KRC50335"/>
        <property type="gene ID" value="ASE19_17255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1670446at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004538">
        <property type="entry name" value="Haemolysin_A/TlyA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002877">
        <property type="entry name" value="RNA_MeTrfase_FtsJ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32319:SF0">
        <property type="entry name" value="PTHR32319:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01728">
        <property type="entry name" value="FtsJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005578">
        <property type="entry name" value="TlyA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00478">
        <property type="entry name" value="tly"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="2">
        <location>
            <begin position="6"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="277" mass="29113" checksum="FD4433B318C017A5" modified="2016-01-20" version="1">MPPRRLRLDAELVRRGLAPSRERAAQLIADGRVKVSGALASKPATGVTTDVAIVVLEGENGPDYVSRGAHKLAGALAVFGAQGLSVEGRRCLDAGASTGGFTDVLLRAGAAEVVAVDVGYGQLHWSLQQHERVHVHDRTNVRTLEAEAIGGPVDLVVGDLSFISLTLVLDALLGVTRPDGDLALMVKPQFEVGKDRLGKGGVVRDPELWVETVLGVARAAGERGWGAQAVTVSPLPGPSGNVEFFLWLRHGPQAVDDESVAAIVRRGTSDPDERVGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1T5</accession>
    <name>A0A0Q8V1T5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">6-aminohexanoate hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14835</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896435.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51368">
        <property type="protein sequence ID" value="KRC51368"/>
        <property type="gene ID" value="ASE19_14835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1239251at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020556">
        <property type="entry name" value="Amidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00571">
        <property type="entry name" value="AMIDASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidase" evidence="2">
        <location>
            <begin position="21"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="115"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="468" mass="48689" checksum="C57C2E619FDA5BEF" modified="2016-01-20" version="1">MYDDAIATAAAIRAGEVSAREVVEDAVARIEKENDTLNAVVAERFEQALAEVDAGLPAGPLQGVPTLVKDLGMQVAGLPLTRGSRLWAGDVQTADSELVARYRRAGMVVLGTTNSPELGKNASTEPLLHGPTRNPWAPTHSPGGSSGGAAAAVSAGMVPVAHGNDGGGSIRIPASACGLFGLKPSRGRVPTYPVPGSLAAPLSANHVLTRSVRDSALLLDLSSAPLRGDAFAAPTPSSPFVEQAATAPLRLRIGLATRRADGGEVSPDVVTAVRDVAALCEQLGHEVVETELAYDADLAMSGFATLMGVSLLADVQHRLEALGRELRDDDLEPFTRMIHDHYAATMTPVQVYDALAAVQQAGWQLGRMFGELDLLLTPTLPLPVPELGFLDTSDPAAMWQRGGDYSSFTAVANATGMPAMSVPAGVDAAGLPMGAHFVGDLGTEGRLLALAAQLEEARPWDLLAPAYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V213</accession>
    <name>A0A0Q8V213_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Threonine aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_15400</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896547.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51482">
        <property type="protein sequence ID" value="KRC51482"/>
        <property type="gene ID" value="ASE19_15400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1124266at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001597">
        <property type="entry name" value="ArAA_b-elim_lyase/Thr_aldolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01212">
        <property type="entry name" value="Beta_elim_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta_elim_lyase" evidence="3">
        <location>
            <begin position="18"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC51482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="357" mass="38647" checksum="D0E1803393E01621" modified="2016-01-20" version="1">MTTFPTAARLRHDPETRQFASDNYAGVHPEVLAAVALANGGHQVSYGEDAYTEHLQVIMAGLFGDGVEAYPVFNGTGANVVGLQALTDRWGAVICAETAHINVDEGGAPERMGGLKLHTVATPDGKLTPELVDRHAWGFDDEHRAMPQVVSITQSTELGTLYTPGEVRALAEHVHGLGMRLHLDGARLANAAAALDVPVREFTSDAGVDVLSFGATKNGALAGEAVVILDPDGVSHLKHLRKMSMQLASKMRFVSVQFEALLADGLWLRLAGHANAMAQRLAAGVREIDGVELLYPTQANGVFARLPHDVSRRLMERHRFYFWDEAAGDVRWMCSFDTTEDDVDAFLGALREEMGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2Q4</accession>
    <name>A0A0Q8V2Q4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_18270</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893265.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48864">
        <property type="protein sequence ID" value="KRC48864"/>
        <property type="gene ID" value="ASE19_18270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="9"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="156"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="227" mass="24358" checksum="D3057ED1F05FC171" modified="2016-01-20" version="1">MSGPRAAVRVTIVDDHALFGESVAMTLESEGYQVRRIDLSDLHTTLASVLASVLRGRPSVVLLDLELGHVGDGMRLIAPLASNGITVIVVTGSVDHHWRGECVRRGAKAVLAKTCPLDEMTATVRRARDGLPLMGRDERNQLVAEVVNGHGEDDAIRARLDQLTRREMEVLGALMGGVQVREIAAQSVVSEATVRTQVKSILSKLELSSQLAAVGAAYKVGWRPPTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3F6</accession>
    <name>A0A0Q8V3F6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Peptidase_M3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_17710</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the peptidase M3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893167.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48765">
        <property type="protein sequence ID" value="KRC48765"/>
        <property type="gene ID" value="ASE19_17710"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06456">
        <property type="entry name" value="M3A_DCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034005">
        <property type="entry name" value="M3A_DCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024077">
        <property type="entry name" value="Neurolysin/TOP_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045090">
        <property type="entry name" value="Pept_M3A_M3B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001567">
        <property type="entry name" value="Pept_M3A_M3B_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43660">
        <property type="entry name" value="PTHR43660"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01432">
        <property type="entry name" value="Peptidase_M3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 7" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2 7" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M3" evidence="8">
        <location>
            <begin position="227"/>
            <end position="673"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC48765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="675" mass="73492" checksum="7A56EF8069DC64E3" modified="2016-01-20" version="1">MTTEALLGTSDLPHQLPRFADIGDDDYAPALEAAMAEQLAAIAAITADPAPPTFDNTLVPLERSGTALTRVLRVFGNKAGADANPTIDAVRAEFAPRLAAHSDAILLDPALWLRIQAVDEQRASLEPEAAYLVERYVTELRLAGAALGEEEKARLRALNEEISSKETAFELALQADSNDLAVVVEDPAELAGLTPGEVSAAAAAASARGLDGTYLLTLVLPTAHPHLASLTDRAVRERLSVAQRSRGSRGGDHDTRALALAILRLRAERARLLGFDNHAAVVTADNTAGTPAAVRSLLERLAVPAARNARREQEALSAQAGFEVAPWDWPYYAEQVRASAYDVDLAALRPWFEAERVLRDGVFFAAERLYGLTFVERTDLDGYHPDVRVFEVSRDGASIGLYLLDLYTRDSKRGGAWMSSFVTQSTLLGDESAVVVNNLNVPKPAAGEATLLTWDETRTLFHEFGHALHGLLARATYPKFAGTAVFRDFVEYPSQVNEMWILWPEVLANYARHHETGEPIPAEVVERLRAAETFNEGFATSEYLAAALVDLAWHELAPEEVPSDVADVPAFESAALAAVGLDNPAVPPRYSTPYFAHSFSSGYASAYYSYIWSEVLDADTVAWFRENGGLTRENGEQYLQHVIGIGGTRDPLASYLEWRGRPAPIEPLLERRGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V464</accession>
    <name>A0A0Q8V464_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_18555</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893314.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48913">
        <property type="protein sequence ID" value="KRC48913"/>
        <property type="gene ID" value="ASE19_18555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1833499at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="6"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="44"/>
            <end position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="308" mass="32741" checksum="C646198DB84348F7" modified="2016-01-20" version="1">MSDLVIETRGLRKEFRSVRGGLRVAVQNLDLAVPGGGGVHGFLGPNGSGKTTTIRMLLGLARPTRGTMRLFGEPVPARLPQVIGRVGAVVESPKFSPNFTGRLNLELLAASIGAPRSRVDQAIATVQLDGRDKDKYKSYSLGMKQRVAIAATLLKDPALLILDEPTNGLDPAGIREIRETIRGLGEAGVTVLLSSHILAEVQHVCTSATIIGNGRLLASGRVEDLLGTSTAHRAVVPDPVRAAEALGRAALPATVDGDAVRVETDDPARITQVLGEAGIWLRELTSLRPDLETVFLDLTRSEQLGDHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5D0</accession>
    <name>A0A0Q8V5D0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Glucose-1-phosphate thymidylyltransferase</fullName>
            <ecNumber evidence="4 6">2.7.7.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_09450</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>alpha-D-glucose 1-phosphate + dTTP + H(+) = diphosphate + dTDP-alpha-D-glucose</text>
            <dbReference type="Rhea" id="RHEA:15225"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37568"/>
            <dbReference type="ChEBI" id="CHEBI:57477"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="EC" id="2.7.7.24"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the glucose-1-phosphate thymidylyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.24" evidence="4 6"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894590.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52652">
        <property type="protein sequence ID" value="KRC52652"/>
        <property type="gene ID" value="ASE19_09450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1004719at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008879">
        <property type="term" value="F:glucose-1-phosphate thymidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045226">
        <property type="term" value="P:extracellular polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02538">
        <property type="entry name" value="G1P_TT_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005907">
        <property type="entry name" value="G1P_thy_trans_s"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43532">
        <property type="entry name" value="PTHR43532"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01207">
        <property type="entry name" value="rmlA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="7">
        <location>
            <begin position="3"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="31476" checksum="27BE0707462BA174" modified="2016-01-20" version="1">MRGILMAGGTGSRLRPITRAISKQLVPVYDKPMIYYPLSTLMLAGIREVLVITTPHEADQLRQLLGDGSQLGITVDWAVQPSPDGLAQAFLVGEHHLAGGSAALVLGDNLFYGAGLGASLRRFRDLDGAAVFGYRVADPSSYGVVEVGPDGIALSLEEKPEKPRSRLAVPGLYFYGDDVVAKARTLRPSARGELEITDLNRLYLDEGRLQVHELPRGSAWLDTGTFDDLNDAGNYVRALEARQGTKVGAPEEVAWRMGLIDDEQLARLAADLLQSGYGQYLLDLLEEGTGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5K5</accession>
    <name>A0A0Q8V5K5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">DNA topoisomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_09645</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the type IB topoisomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894624.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52686">
        <property type="protein sequence ID" value="KRC52686"/>
        <property type="gene ID" value="ASE19_09645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="812517at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003917">
        <property type="term" value="F:DNA topoisomerase type I (single strand cut, ATP-independent) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.66.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035447">
        <property type="entry name" value="DNA_topo_I_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001631">
        <property type="entry name" value="TopoI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014711">
        <property type="entry name" value="TopoI_cat_a-hlx-sub_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013500">
        <property type="entry name" value="TopoI_cat_euk"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01028">
        <property type="entry name" value="Topoisom_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00416">
        <property type="entry name" value="EUTPISMRASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55869">
        <property type="entry name" value="SSF55869"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="Topoisom_I" evidence="6">
        <location>
            <begin position="88"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="328" mass="36304" checksum="3667EF5F3F086AEF" modified="2016-01-20" version="1">MARLRRTSPEQPGWTRRRAGRGFVHLDQSGSPLPPEDVARCKALVIPPAWRDVWISPYPNGHLQAVGTDDAGRRQYLYHPAWVARRSDEKHARVVALGRRLPRVREEVLADLGEDDLGTRATCALAVRLIDLGCFRIGNDIYAEEYGSVGLTTLERQHVRRSGDTLVFEFVGKSGVEHHVEIDDEVAVGALERRRRRRRTDQRLLDVTGADVNEYLRGISGLDVSAKDFRTWHGTVLAAAALADGPPAPEVSKAARKRAVAAAMREVSEFLGNTPALARSAYVDPRVVDAYEEGRTIRAAVRRTSGEVDADARRAALERATLRLVGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5S7</accession>
    <name>A0A0Q8V5S7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09540</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894605.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52667">
        <property type="protein sequence ID" value="KRC52667"/>
        <property type="gene ID" value="ASE19_09540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1647928at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="189" mass="20942" checksum="08ED483B0FED3364" modified="2016-01-20" version="1">MSSLRLQVLHLTGQSDPRSCGLSPVQHAFLDALPVADDARVRLNFPYDATLRPYRPVPLWLGSLRHLGLFVRIRLRRAAWARRNRSSVESQLRRAEQTLVLAGSIGLDLLGRLDLPRDLLDRLTVVAYGAVATRPPHCRTIRVASRTDHLARWWGCDVEVTSGHLAYLGSPELAALCAQVARDLAAEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V651</accession>
    <name>A0A0Q8V651_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH marR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10115</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52763">
        <property type="protein sequence ID" value="KRC52763"/>
        <property type="gene ID" value="ASE19_10115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="135" mass="15061" checksum="483C427CAED3924D" modified="2016-01-20" version="1">MDKAARVLRIDMLRHAHRSGYTEIGDAHNAVFATLPPEGARAADMAARSGITRQSMGEVVRDMARLGMVEMVPDPTDRRAKIVRYTDYGKTVAQTGFDHILAVEETLREEFGEDDLATTRRVLLRVRELLAPAPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6H3</accession>
    <name>A0A0Q8V6H3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">NADH-quinone oxidoreductase subunit D</fullName>
            <ecNumber evidence="5">7.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">NADH dehydrogenase I subunit D</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">NDH-1 subunit D</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nuoD</name>
        <name evidence="8" type="ORF">ASE19_10045</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5">NDH-1 is composed of 14 different subunits. Subunits NuoB, C, D, E, F, and G constitute the peripheral sector of the complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Peripheral membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the complex I 49 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894685.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52751">
        <property type="protein sequence ID" value="KRC52751"/>
        <property type="gene ID" value="ASE19_10045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="473681at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050136">
        <property type="term" value="F:NADH dehydrogenase (quinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.645.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01358">
        <property type="entry name" value="NDH1_NuoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001135">
        <property type="entry name" value="NADH_Q_OxRdtase_suD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014029">
        <property type="entry name" value="NADH_UbQ_OxRdtase_49kDa_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022885">
        <property type="entry name" value="NDH1_su_D/H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029014">
        <property type="entry name" value="NiFe-Hase_large"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11993">
        <property type="entry name" value="PTHR11993"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00346">
        <property type="entry name" value="Complex1_49kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56762">
        <property type="entry name" value="SSF56762"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01962">
        <property type="entry name" value="NuoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00535">
        <property type="entry name" value="COMPLEX1_49K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 5 6" id="KW-0520">NAD</keyword>
    <keyword evidence="2 5" id="KW-0874">Quinone</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-1278">Translocase</keyword>
    <keyword evidence="1 5 6" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Complex1_49kDa" evidence="7">
        <location>
            <begin position="157"/>
            <end position="445"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="445" mass="49055" checksum="DDEA7BD43D38B183" modified="2016-01-20" version="1">MSTDFYADPADTSDGKVFTVSGQDWGDIASGLGEGDAAERVVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIGYLHTGIEKNMEYRTWTQGVTFCTRMDYLSPFYNEMTYVLGVERLLDIEDDIPEKAQVMRVLLMELNRISSHLVCIATGGMEIGALTVMTIGFRERELVLDLFELITGLRMNHAFIRPGGVAQDMPPGALDQIRDFVALMKKRLPEYAALCNANPIFKARLENVGHLDLEGCMALGLTGPVLRSTGYGFDLRKAQPYCGYETYDFDVQTWDTADSYGRFRVRLNEMWESLRIIEQAADRLAKLEGAPVMVADKKVAWPSQLSIGSDGMGNSLDHIRHIMGESMEALIHHFKLVTEGFRVPAGQAYVPVESPRGELGAHVVSDGGTRPFRAHFRDPSFNNLQAMGVMSEGGQIADVIVAIASIDPVMGGVDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6H5</accession>
    <name>A0A0Q8V6H5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Sec-independent protein translocase protein TatA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tatA</name>
        <name evidence="9" type="ORF">ASE19_16535</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">The Tat system comprises two distinct complexes: a TatABC complex, containing multiple copies of TatA, TatB and TatC subunits, and a separate TatA complex, containing only TatA subunits. Substrates initially bind to the TatABC complex, which probably triggers association of the separate TatA complex to form the active translocon.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the TatA/E family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893677.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50208">
        <property type="protein sequence ID" value="KRC50208"/>
        <property type="gene ID" value="ASE19_16535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1907955at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033281">
        <property type="term" value="C:TAT protein transport complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008320">
        <property type="term" value="F:protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043953">
        <property type="term" value="P:protein transport by the Tat complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00236">
        <property type="entry name" value="TatA_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003369">
        <property type="entry name" value="TatA/B/E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006312">
        <property type="entry name" value="TatA/E"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02416">
        <property type="entry name" value="TatA_B_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01411">
        <property type="entry name" value="tatAE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0811">Translocation</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="48"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC50208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="88" mass="9527" checksum="D200FC2FD4F2A9FB" modified="2016-01-20" version="1">MFPLIGMPQGAEWLIILAIVILVFGAAKLPDLARGTGQALRIFKAETKGLRDDEDDKKPAAPAQPSQLNASDEIAEGEIVDERRENNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6T8</accession>
    <name>A0A0Q8V6T8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Poly(3-hydroxyalkanoate) polymerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_10660</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894796.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52863">
        <property type="protein sequence ID" value="KRC52863"/>
        <property type="gene ID" value="ASE19_10660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="891360at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042619">
        <property type="term" value="P:poly-hydroxybutyrate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010941">
        <property type="entry name" value="PhaC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07167">
        <property type="entry name" value="PhaC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PhaC_N" evidence="3">
        <location>
            <begin position="78"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="563" mass="61017" checksum="10ADE59C33C231AE" modified="2016-01-20" version="1">MSFSTTTSLADAAAPLDVLLVDAALGPVRRFLPDMSTARWAVSLARQPRTTARRLGALAGEAAKVVAGTSDVTPQRGDRRFTDTGWTENPLLRRLVQVYLATGRTVDQLVVDADLDPRDRKRVRFLVENVVEALAPSNVPLVNPASAKAVIDTAGLSLVRGGTQLVKDLASSPRVPEMVDTSGFTLGENIAATPGSVVFRNDVLELIQYVPQSDEVHEVPVMIVPPTINKFYAIDLSPGRSLVEYSTQSNRQMFVISWRNPDARHKAWNFDTYVGSILEALDAVEEITGSPTTMLAGICSGGILASITAAYLAGIGRQDRLAGIVLAVTVIDNHDSGTVSALSDPRMASLAKARSAQKGFLDGRSLTEVFAWLRPSDLIWNYWVNNYLLGKKPPAFDILFWNADTTRMSAGLHADFVDMAVANQLTRAGALTVLGQPIDLGKVTVDSYVVAGIADHITPWENCYRTTQLFGGNTRFILSTSGHIAALVNPPGNPKATFHTNDDHGSDAKEWLKGAETHQGSWWNDVSQWLDTRTGELKPAPKEMGSTRLRPLADAPGTYVFDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6V4</accession>
    <name>A0A0Q8V6V4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10740</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894811.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52879">
        <property type="protein sequence ID" value="KRC52879"/>
        <property type="gene ID" value="ASE19_10740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377545at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="307" mass="32380" checksum="48D031C71A099733" modified="2016-01-20" version="1">MKWNVADLPDQTGRTVIVTGPTLGGLGHHTALELARRGARVVLAGRNPAKVEETVVAIRKEVPEATLEALHLDLASLASVRAAAAAAEQIGSIDVLVNNAGVMGTPYSRTADGLEIQMATNHFGPFLLTGLLLPQLVQSGDGRVVNVASLFHTFAGKAPLGNPREQSGRYHRWKVYGQTKLANLYATAELDRRLTEADLPVRALAAHPGFAGTHLAANGQYGRSSGGIATILDAGIKAVSQSAAAGAWPSLMAATADLPGNTFVGPSGPRQMIGPPRIVGRSRLARNEEAARKLWEISEETVDLQYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Z8</accession>
    <name>A0A0Q8V6Z8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11315</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894911.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52980">
        <property type="protein sequence ID" value="KRC52980"/>
        <property type="gene ID" value="ASE19_11315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1466669at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007136">
        <property type="entry name" value="DUF347"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03988">
        <property type="entry name" value="DUF347"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="198"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="228"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="277"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="415" mass="44181" checksum="4E7F2B8F12C5DD70" modified="2016-01-20" version="1">MTTSPTPQRRALPRQLLNKVPEVTVWFWIIKILCTTVGESFADYVNETLGFGLVPTAVLFTVVFAVVLGVQMRLRAYVPAVYWLTVVVVSVTGTLYTDILTDQLGVPLWISTTVFAALLAAVFGAWYARERTLSIHSIVTTPREAWYWLAVLVTFALGTATGDWTLELTGWAPGQSVLLPLTLIAVVAAVWRYGADPVLAFWLAYILTRPLGANIGDWLASPSDEQGLGLGTLGTSLLFLGAILAAVVYLSVSRADVITEETATTTVSTGTPRRERVSLAVLAATAIATFGLLTWANAQPHTDALAAEEGAAPTCSDSGNPDISAFPAGDVASFRTISKDTRALVGAGDQAGAASRATDLETAWDDAESRLVAKDCVTWTYVDHEIDAVLSAVRAPSPDQQEESGALDHLLGALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7F5</accession>
    <name>A0A0Q8V7F5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12325</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895085.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53158">
        <property type="protein sequence ID" value="KRC53158"/>
        <property type="gene ID" value="ASE19_12325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="630753at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="497" mass="54261" checksum="4BED123508E1076C" modified="2016-01-20" version="1">MTLLAQPDHEVVIVGGGFSGIGAAILLSRAGFEDYLLLEAGDGLGGAWHWNTYPGVAVDIPSFSYQFSFEQVAGWSRVYAPGRELKAYAEHCVDKYDVRRRTRLRTTVTAATFDDEAHLWRLELDGGEAVTARHVVSATGVLTQPKLPDIDGLADYTGTVMHTARWDHSVDLTGRKVAIIGTGASAVQAIPHLARAAEHLTVFQRTPIWCLPKPDAPLPGAARAALRRVPGAKQVSRLASQSFVELTFPVAAHFAGLVPVAAVGERLGHAYLRRAVRDASVREKLTPRYALGCKRPSFSNSYLPTFNRDNVTLSTDGIAAVTPTGVRTADGTEHTADVLILATGFKVFEKGNMPPFTVRGADGLDLDKWWEENRFQAYQGVSVPGFPNFFTILGPYGYNGSSYFNLIETQGAHIVRALRQARKVGATRVEVTREANAAYFASALGRRKHQVFFQDSCGLANSYYFDDNGDVPFRAATTLETMWAAKRYPLDAYAFTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7H0</accession>
    <name>A0A0Q8V7H0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13220</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895772.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53310">
        <property type="protein sequence ID" value="KRC53310"/>
        <property type="gene ID" value="ASE19_13220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="14"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="196" mass="22047" checksum="95C2E815F2663839" modified="2016-01-20" version="1">MSELCTNRREAKRYQTALRLQQCAVQLTVERGFDGWTIDDLAVAADVSRRTVFNYFDGKAEVVLGPEPEVDDLQVEAFVAGGPTGRLFDDLLVLAHEATREKAGNEQHLPAVREAIMNDPRLIQLVHERFEVAATLLGDCIRQREGDDFPDLRVRTILRVLITCFDDALERLAADADRTFSEHFDDCVADIRSTLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7J4</accession>
    <name>A0A0Q8V7J4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19545</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893481.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49079">
        <property type="protein sequence ID" value="KRC49079"/>
        <property type="gene ID" value="ASE19_19545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2125777at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003918">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.268.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013757">
        <property type="entry name" value="Topo_IIA_A_a_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="33566" checksum="DF97852C2CE5AD27" modified="2016-01-20" version="1">MSDELDLEHASFGELLDFLIAGNEPAIGYSGILSELDDHQVMRRRRVWRLGRLARIEEPPGHTRLLAGEDTMWCAADDQFEETWELRDEDRGSDRGQLHDVWLVEPRRYWTSWLSLDPDLVMDSLHRTEFEGRPAWKFTAPEAKGGNASIIIDAEIGLVVEMSRADVGHAVIWSELQVEPTLGPRFFEPGHLTPLARPDAERDPSESERLHAERTILTAVLQAGRDWPLIARLAGSSRDEHRARATIMAHLDIEEWTAQHVMGVQVRQLDRSHQEAIRARLHELERQLDHLEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7L8</accession>
    <name>A0A0Q8V7L8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12725</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895685.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53222">
        <property type="protein sequence ID" value="KRC53222"/>
        <property type="gene ID" value="ASE19_12725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1309950at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041669">
        <property type="entry name" value="TetR_C_15"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17918">
        <property type="entry name" value="TetR_C_15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="32"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="55"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="231" mass="25150" checksum="581F8B35804E9F86" modified="2016-01-20" version="1">MTSASVEGTTTEVSSGAVGPSRRRLPTQARSRERVERILDAAAQLVVADGVEGLTTRSIAETAGLPVASLYQYFADKEAVLLALCERDMAEMDDQVALDLAAVAESGELTMASLVETSMRAFVKVYHRRPAFMQIWMRGRTNSAVYDYGRHHNKRIAENLLAFAADLGLVDQGDHTDAELLAMGELAVELGDRAFQLAFERDPQGDDFLIDEAIDLVTGYLSKVTADPGPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7M3</accession>
    <name>A0A0Q8V7M3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Spermidine/putrescine ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_13880</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897074.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53429">
        <property type="protein sequence ID" value="KRC53429"/>
        <property type="gene ID" value="ASE19_13880"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1264541at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="71"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="101"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="132"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="190"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="234"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="65"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="266" mass="28587" checksum="2C3EC877E5C1AF3C" modified="2016-01-20" version="1">MTLSTTAKRLLAAVTFGVLALIYLPLLVVVANSVNSNESMTWPPDHLTFEWWQRAWHSAGARDALLTSLEVGAVATGIALVLGTLLAMALQRYSFFGKNTVNLLVILPIALPGVVTGIALNNGFRGILGIDLTLWTIVIAHATFCIVTVFNNVQARLRRMGTSLEEASADLGAGVFTTFRLVTLPQLRSALLAGGMLAFALSFDEIIVTTFTAGDGATTLPIWILNNMFRPNQAPVVNVVAVVLIVFSIIPVWLAQRLSSDVDAVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7N1</accession>
    <name>A0A0Q8V7N1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Peptide ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_19155</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893858.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49127">
        <property type="protein sequence ID" value="KRC49127"/>
        <property type="gene ID" value="ASE19_19155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1734230at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025966">
        <property type="entry name" value="OppC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12911">
        <property type="entry name" value="OppC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="45"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="119"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="162"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="199"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="250"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="305"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="123"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC49127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="339" mass="36536" checksum="6463C0876BA28FB2" modified="2016-01-20" version="1">MTLPATDLDTHVGPPVGESEPEAGTAIVGRSPMQLAMRRFRKDKLSMFAFSVVVLYFLAAVLAPFLVKFGVLDPYTFHNTGAGSLLDEFTLPKGSWGGISGDHWLGVEPGTGRDVLARVWYGVTFSLVMAIAATIISVGLGTVFGIIAGVSGGFVDSAIGRLIDLVLSFPSTLMLLALSSLFIDILVHDIHVPEGDVANGTYVVLVLGFFGWPYVARLVRGQVLSIREREFVEAAKLMGASRFRLYFKEILPNLWAPLLVSATITMPTYISAEAALNYLGVGIKPPTPTLGNVLSGSIDYSTSDFVFFFMPAFLIMIIVVSFNLLGDGLRDALDPKGHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7N3</accession>
    <name>A0A0Q8V7N3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895078.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53151">
        <property type="protein sequence ID" value="KRC53151"/>
        <property type="gene ID" value="ASE19_12285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2160150at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="127"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="282"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="133"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="177"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="303" mass="30284" checksum="35CF07D9A89249D6" modified="2016-01-20" version="1">MGWVAAAASGVAATVGVATFALGTLGSDDVGDQSVWIDGPLAGTQVAPGAVVVSAHATAETPIDDLVLEVDGEQVAEAGDVERNGKLVFATFDWDAAAGEHTLVVLRDGDHDARSAERLVYVGVPGVPAPSASPTPSASATPSASPSASETPTESASPTESVSPTETTATPEPSDPTTRPTRKPPTTPTTKPTPTADPPTLDRAGMSSVSGELKVYQFAGCPYVVTVTALTTNATRVRAIVSGTGASFNLADQGGGAWSGTITSGYDASQVGSHTVTLEATGPGGKVSRSAGTLDIRAGCPKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7N5</accession>
    <name>A0A0Q8V7N5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Site-specific recombinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13565</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895836.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53374">
        <property type="protein sequence ID" value="KRC53374"/>
        <property type="gene ID" value="ASE19_13565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1791095at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038109">
        <property type="entry name" value="DNA_bind_recomb_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011109">
        <property type="entry name" value="DNA_bind_recombinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006119">
        <property type="entry name" value="Resolv_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036162">
        <property type="entry name" value="Resolvase-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07508">
        <property type="entry name" value="Recombinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00239">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00857">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53041">
        <property type="entry name" value="SSF53041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51737">
        <property type="entry name" value="RECOMBINASE_DNA_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51736">
        <property type="entry name" value="RECOMBINASES_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Resolvase/invertase-type recombinase catalytic" evidence="1">
        <location>
            <begin position="8"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="domain" description="Recombinase" evidence="2">
        <location>
            <begin position="161"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="438" mass="48087" checksum="EE84A7403E6A10F1" modified="2016-01-20" version="1">MNTHQERRCVLYARLSVTKEESVSIARQLQSCRRYAEARGWEVVGEFIDDGVSATANRPEDRNGWAALLAATDFDAVIIWKVDRLARRVLDFLHADEALQKRGAGLVAVEDPIDMTSPQGRAFAVMLAVFGEMEAEAIRARVRAARAQLLKDGRWAGGGIPYGYRSAANPDGPGWVLVKDPARQPWLAEVVGKALGGVTVNAITTWLTAQGAPLPEGSTARRKSGATAWNRQTVDGILRNPVLAGMTPHNPGRAKSAKRADPFAVFRDEDGEPVVNESLAVISVEDFAVLQKLLDARSTPQARKWSEREPTSPFLSRVVRCDDCDVFLCRGTNQKRPVLYCPSCRQTMSRSALDPYLVGRLLAERGSEPLGGSTVEAHWAAAGTSDDARREILLTQLASLRVRRGVVGRRFDEQRVLLKWRGVSALPIRVNCQEPSDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Y5</accession>
    <name>A0A0Q8V7Y5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897100.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53402">
        <property type="protein sequence ID" value="KRC53402"/>
        <property type="gene ID" value="ASE19_13735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1890883at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="37"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="286" mass="31367" checksum="277AED0A13EF3C56" modified="2016-01-20" version="1">MTIDAWWESGERVALRFGDGEHGVFVQRLGAGEPMTLLHGFPSSSHDWSHVAPALAVRYALLLPDLLGFGASDKPAEHTYSIHEQADLVEALWAAEGTTRTRLVAHDYGVSVAQELLARREEGALGVELVAVDFLNGGLYPDIHRPEPVQTALLDPVQGPQISAILDEALITGALGPTFASEAGPADHAPAIWRSLERYDGQRNAHLLIRYIVDRQEHAERWTSVLERTDVPLRFVWGMLDPISGAHMAERIRERLPAAPLVALEDVAHWPPLEAPDRVAAALLEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8P1</accession>
    <name>A0A0Q8V8P1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two-component system response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_14620</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896944.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53558">
        <property type="protein sequence ID" value="KRC53558"/>
        <property type="gene ID" value="ASE19_14620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="817710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="8"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="141"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="141"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="245" mass="25990" checksum="213AEF7A96748CAB" modified="2016-01-20" version="1">MLGEVPVRLLIVEDDDAIAAPLVRAVQREGYDVDRVAAGLPAIDRVAAGDVDLVLLDLGLPDMDGLDVCRRLRTDGYAGGIVILTARAGELDRVVGLDVGADDYLAKPFSLSELLARVRALLRRSLTSPGAPEAVVAPVAAAPATAGSALRVDRATRRARVGETELSLTAKEFDVLALLDDDRGAVVTREDLMARVWDENWFGSTKTLDTTIGRLRQKLVDGGAPVTLATVRGVGFRLEDAAPDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8S4</accession>
    <name>A0A0Q8V8S4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MPAB_Lcp_cat domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14410</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896979.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53524">
        <property type="protein sequence ID" value="KRC53524"/>
        <property type="gene ID" value="ASE19_14410"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018713">
        <property type="entry name" value="MPAB/Lcp_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09995">
        <property type="entry name" value="MPAB_Lcp_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MPAB_Lcp_cat" evidence="1">
        <location>
            <begin position="20"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="308" mass="35336" checksum="A3D830E0CB6F341E" modified="2016-01-20" version="1">MTIAPWDPSQPHHELAADVRWWMGMPVAFGLYGRLALDQVAYREVAAAVDASGRFAENFTNRGIRSYLWGPLLLFGDEADRRRTADRLKELHGQVHGKGRGHFAGERYSALDPALWKWVGTSSMLVFHTGYVATYGRALTEEQREVVYRTVLHLSDFDLPSEQARIPGTLAEAMAYYDEVAATELADNEFLRWAAQRFDALPVPTLVGPRWLHVLTTPVWRLLTPALSRPARVCSEAAAHPRMQELLGVRPSRLRRWEFATYTWLLRTARRLLPTWLLLEPMAHNRYRYERLRALYAKPQLTTFAPPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9N1</accession>
    <name>A0A0Q8V9N1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895266.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53835">
        <property type="protein sequence ID" value="KRC53835"/>
        <property type="gene ID" value="ASE19_07030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="432870at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="418" mass="45257" checksum="145F549C0BC1FBCF" modified="2016-01-20" version="1">MSRYAALSREELAALVPELLLMGQLIDRSGMAWCIAAFGREEMLQIAIEEWAAASPIYTRRMQDALGYAPDVPGRGDVVTIFKGLQLDIGAPPQFMDFRYTVHDPCHGEFRLDHCGALMDVEPMGEEYVRGMCHDIEDPTFDATAIATNPHAQVRPIHRPPRTPADRHPHCAWTVVIDESYPEPTPVPALEVNERSRAASLPLPPIDASDEGVADYAGPLLSDVDFAAFSHSALVRIADEVCLQMHLLDRAFALAVAERTETDGELERLRRKQLVGVAGIGADRLGRCLGLDRWDDPVAAALALLAAHPLLNPAAYVAADLGGAELVVRPGPADEDQAWISLCGPDWTAALQAIVRTIDPHLDVVVSPLAGPEGEGWRAVVVRTDVAAPEADEVAVTRFSTGATFAFQPRTSLPITPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9U4</accession>
    <name>A0A0Q8V9U4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH_17 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07630</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895373.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53942">
        <property type="protein sequence ID" value="KRC53942"/>
        <property type="gene ID" value="ASE19_07630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2076478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041657">
        <property type="entry name" value="HTH_17"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12728">
        <property type="entry name" value="HTH_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_17" evidence="1">
        <location>
            <begin position="13"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="68" mass="7597" checksum="A3F79E57210CAD39" modified="2016-01-20" version="1">MSSTAIQLPGYVSDAEAAELLGYSVVNLRRLRRLGEGPRYIKRGQRVCYRLADLSSWLDEGIVDPRAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA74</accession>
    <name>A0A0Q8VA74_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Acetyl-CoA acetyltransferase</fullName>
            <ecNumber evidence="5">2.3.1.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_08685</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.9" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895654.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54222">
        <property type="protein sequence ID" value="KRC54222"/>
        <property type="gene ID" value="ASE19_08685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1058688at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003985">
        <property type="term" value="F:acetyl-CoA C-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="3">
        <location>
            <begin position="4"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="4">
        <location>
            <begin position="275"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="1">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="357"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="387"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="403" mass="42364" checksum="11833ABBD985E8A2" modified="2016-01-20" version="1">MRRVAIVGPVRTAVGGFGGALRPLPAEQLAAEVIKALVARTGVDPAVIEDVAFAQSYANSEAPCIGRWAALAAGMPIEVPGFQTDRRCGGGLQAVITAAMTVQTGAADVVVAGGVESMSNIEHYTTTARWGSRSGNQTLYDRLDRGRERSQPEERFGRISGMIETAENLATQFGIGREEADAFSVRSHQRAAAAWESGVFVDEVVAVSVPQRRGDALVFDRDEGVRPESSMETLGRLRTITPGGTVTAGNAAQQNDAAAACLVVAEDRLDELGLEPIAWFEGWAAAGVDPSIMGIGPVSAVQRLFARTGVGFDDLDLIEVNEAFAVQVLAVLQGWGVKLDEVEDRLNVNGSGISLGHPIGATGVRILTTMLHELDRRKGGLALETMCIGGGQGIAALFRGVSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAC2</accession>
    <name>A0A0Q8VAC2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Carnitine dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06830</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895618.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54186">
        <property type="protein sequence ID" value="KRC54186"/>
        <property type="gene ID" value="ASE19_06830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="969868at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="391" mass="41631" checksum="5AEDE92744262876" modified="2016-01-20" version="1">MENDHASAPPSGPLTSLRVIELAGIGPGPFAAMMLADMGATVIRIDRADAVPATRPTGAHPDVLNRGRRSIAVDLKSDAGRDLVLDLVETADILIEGYRPGVTERLGLGPADCLARNARLVYGRMTGWGQTGPMSQFAGHDINYIALTGALHAVGRAGERPVPPLNLVGDFGGGGLMLAFGMVSAVLEARLSGRGQVVDAAMVDGASVLTTAIHGLRNRGIWGRPHGENLLDTGAPFYEVYECADGKYVAVGAIEPQFYAELVRLTGFEGDPDDADRMNSGSWQSAKKQWADLFATRTRDEWIELGGSSDACLAPVLDWDEAPNHPHLAARETYVEHAGVVQPAPAPRFAETPGRIQRPAPYPGDHTDEILQEAGLGDEAVRRLRQAGTVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAP0</accession>
    <name>A0A0Q8VAP0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MarR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894870.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52937">
        <property type="protein sequence ID" value="KRC52937"/>
        <property type="gene ID" value="ASE19_11065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1744037at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023187">
        <property type="entry name" value="Tscrpt_reg_MarR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01117">
        <property type="entry name" value="HTH_MARR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="27"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="167" mass="18602" checksum="575E17DDE665944D" modified="2016-01-20" version="1">MPDPRLPFDPIDRAGDLWEQHFGDATSMRLATSVMRVQQLMIGALDGALKPFGLTFSRYEVLVLLLFSKRGELPLSKIGERLMVHPTSVTSAIDRLEAQGFVERVPDEDDRRRTLARLTATGRSTVKKATAAVEGIDFAITGLTDRQQGDAYQLLRKVRRSSGDFPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAQ6</accession>
    <name>A0A0Q8VAQ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11150</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894886.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52953">
        <property type="protein sequence ID" value="KRC52953"/>
        <property type="gene ID" value="ASE19_11150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1298575at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="310" mass="32338" checksum="B83A42278BEC051B" modified="2016-01-20" version="1">MPTIDLTAVAVRDEVRPQHPLDAAPRRIGLTLAELQHAAHLAGDAPLPFEVAPPTEADTMQSRLGSSPATTDDQSYRSVVVALHDGADALTRRGLLSDGVLDPGLAGAIGLLASPRTALDIDLRMAGVQAKVWHRQDATAVASLATVDGIVFELGWFATDAWPGELARVAAISEDLELGTSAVPAYVDLPFELADAAAEATRLGRGDLLPVLARRHAGAVRGPGGVLADDAVARVLNALASEAQGRLRALVADVSGARIDTAGVVSWTLLADGWRALRPHREDGVPRLEIRAVAPDDLATGLAPVLEGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAR9</accession>
    <name>A0A0Q8VAR9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_15800</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50343">
        <property type="protein sequence ID" value="KRC50343"/>
        <property type="gene ID" value="ASE19_15800"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016817">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024195">
        <property type="entry name" value="NUDIX_hydrolase_YfcD_pred"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017340">
        <property type="entry name" value="Nudix_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="5">
        <location>
            <begin position="33"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR017340-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="170" mass="18548" checksum="3ADC294498812C65" modified="2016-01-20" version="1">MSSPGDELVPLYDAAGQPSGEVVTRREMRERNLRHAATAVIVRNSAGQVYVHRRTDTKDVFPGRYDFAAGGVLQVGEEPHDAAVREAAEELGVKGVELTSLGEGDYADDHTDYHAFCFTCVYDGPITWQPEEVAWGAWVTVEELRAMVRTESFVPDSIALLGEHLLGGTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBA1</accession>
    <name>A0A0Q8VBA1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycerophosphodiester phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12255</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895072.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53145">
        <property type="protein sequence ID" value="KRC53145"/>
        <property type="gene ID" value="ASE19_12255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1542724at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="SSF51695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GP-PDE" evidence="1">
        <location>
            <begin position="3"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="263" mass="29865" checksum="6423C497A346AD9A" modified="2016-01-20" version="1">MRPQVVAHRGASHEIAEHTLGAYITALDSGAGGLECDVRLTADGHLVCVHDRDLRRTAATKGLVSTMDLADLSDLDFASWKNPWSDLDDEADDDDERGVLTLRKLLETVADYDRRVEMAIETKHPTRYGGLVEKRLVEMLRDFGWDRADAPVRIMSFSFTALQRVERLAPEVQLVQLFDKPNHWPMLRRVVGRDWIMGPGIKMLRQHPRLRDSLARSGRDVHVWTVNKEKDLDLCLDLGVKAVISDKPRFMLDLLDTRFGASE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBI3</accession>
    <name>A0A0Q8VBI3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">4-hydroxyacetophenone monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_15185</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FAD-binding monooxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896493.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51426">
        <property type="protein sequence ID" value="KRC51426"/>
        <property type="gene ID" value="ASE19_15185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="630753at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004499">
        <property type="term" value="F:N,N-dimethylaniline monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020946">
        <property type="entry name" value="Flavin_mOase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00743">
        <property type="entry name" value="FMO-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC51426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="509" mass="56356" checksum="F92F63E2211708C3" modified="2016-01-20" version="1">MSATPGRRNVDHLVVGAGFAGLAAAIKLDEAAERDFVVIEKDSDVGGTWHINTYPGAECDVPSQLYSYSFALNPNWSRVYSPQQEIWEYTRKVAEDSGTLDRFVFGTAVVDATWSEEDQRWVVRTEGPDGPQEYAARTVISGSGGLSEPRLPEVEGIDDFRGEIFHSARWDHDVDLTGKRVAVIGTGASAIQLVPELQKVLAGSGGHMDVYQRTPNWVIPRNERAFTGFEKAVFKNVPGVQRALRSIVYGTLEARVPAFARFPQAMRAVELQGRRNIAKGITDPELRRKVTPAYRAGCKRILISNKWYPALDADNVDLVTDPIARITGDAIVTADGTERPIDVLVVATGFYVTEPPIAQHITGRDGRTLADVWDDGGMAAYKGTTIHGFPNLFQLVGPNTALGHSSMIFIIESQVRYVVEAAKAMRRENLGVIEPTQAAQDAWTAEIRRRMKPTVWQTGGCASWYLDKFGNNTTLWPGQTFTFRQHLSTFDVDKYDVEPVRHSKEKVTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC35</accession>
    <name>A0A0Q8VC35_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">POLIIIAc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04520</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894334.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54748">
        <property type="protein sequence ID" value="KRC54748"/>
        <property type="gene ID" value="ASE19_04520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1615112at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010996">
        <property type="entry name" value="DNA_pol_b-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027421">
        <property type="entry name" value="DNA_pol_lamdba_lyase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004013">
        <property type="entry name" value="PHP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003141">
        <property type="entry name" value="Pol/His_phosphatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017078">
        <property type="entry name" value="UCP036978_PHPhdr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14716">
        <property type="entry name" value="HHH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02811">
        <property type="entry name" value="PHP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036978">
        <property type="entry name" value="UCP036978_PHPhdr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00481">
        <property type="entry name" value="POLIIIAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47802">
        <property type="entry name" value="SSF47802"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="POLIIIAc" evidence="1">
        <location>
            <begin position="110"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="347" mass="37729" checksum="001C3453782D39C4" modified="2016-01-20" version="1">MEEQGYDGTPVAALRRIAFLLERGRADSYKVKAYRGAAAAILPLSSDEVAERARAGTLTQLSGVGASTARVISQAVEGQLPEKLAEAEEQYGGPQTAGGAGTALRARLRGDLHSHSDWSDGGSPIEEMAMTAMELGHDYLLLTDHSPRLKVARGLSAERLTRQLDVIDAVNEHLGDGFRLLKGIEVDILDDGRLDQTDRMLERLDARVASVHSKLAMDPEQMTKRMVAAVRNPYTNVLGHCTGRLVTGNRGTRAQSRFDARAVFEACAEEGVAVEINSRPERRDPPTKLLDLARDIGCVFSIDSDAHAPGQLDYPLLGCERAETAGIDPDRIVNTWPVERLLDWATP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC88</accession>
    <name>A0A0Q8VC88_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NHase_beta domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894366.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54715">
        <property type="protein sequence ID" value="KRC54715"/>
        <property type="gene ID" value="ASE19_04330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1718359at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018822">
        <property type="term" value="F:nitrile hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042262">
        <property type="entry name" value="CN_hydtase_beta_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024690">
        <property type="entry name" value="CN_hydtase_beta_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008990">
        <property type="entry name" value="Elect_transpt_acc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023808">
        <property type="entry name" value="Nitrile_Hydratase_acc_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02211">
        <property type="entry name" value="NHase_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50090">
        <property type="entry name" value="SSF50090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03889">
        <property type="entry name" value="nitrile_acc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NHase_beta" evidence="1">
        <location>
            <begin position="29"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="136" mass="15070" checksum="221723C8FFA5532E" modified="2016-01-20" version="1">MRDSNGQPDSVGPGEEVKALVQNLPLLSNDLAFDEPWQLRAFALAIAAHKSGQYPWSDFQSALIASIKGWEGAGEVGDAAWSYHEHWLDAIQAVMVDNDLVDVDLLEERVREVLDMPANRNHHEPHYEPVAVDPGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD33</accession>
    <name>A0A0Q8VD33_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CHAD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05595</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894154.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54927">
        <property type="protein sequence ID" value="KRC54927"/>
        <property type="gene ID" value="ASE19_05595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1878295at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.40.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007899">
        <property type="entry name" value="CHAD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038186">
        <property type="entry name" value="CHAD_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05235">
        <property type="entry name" value="CHAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00880">
        <property type="entry name" value="CHAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51708">
        <property type="entry name" value="CHAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CHAD" evidence="1">
        <location>
            <begin position="1"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="272" mass="29250" checksum="16040570ABF8D907" modified="2016-01-20" version="1">MTTAGEMLSAVLADLADQTISRRSAALADEPDAVHQLRTTVRRQRNLLAAFRRCFDTEAASTVGAALASYGGLLGECRDLEVRADDTARALTALGLEHLDGRLVVPLREAHARAHATLVVWHTGPDAVRLDALLAGWAEAPVLAERARRPAEDVAAKAVRRQVRRVLARADAAADGSEEARHDLRRAARRLRHTADAVADVLTDDAVVRAGRLGQRIQGALGDHRDALLLADHVRRAGDPDDRLVDHAVQLAGEALDGLDEPLAELRRAAVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD53</accession>
    <name>A0A0Q8VD53_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_06235</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894445.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55035">
        <property type="protein sequence ID" value="KRC55035"/>
        <property type="gene ID" value="ASE19_06235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="916788at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="78"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="111"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="135"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="234"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="71"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="272" mass="27835" checksum="F03C54C4C5BD1DBB" modified="2016-01-20" version="1">MTRAIGRSLINALVTVLVVLALWQAVVSLAGVSPYVAKGPLDVFRFLFVDEAGAAPGRLAADHRDALRPLTLQTLRDAGLGFAVGLGIAVVLAVAFSLSKTVEAGVLPLALLLRSVPLVSISPVIILITGRGTTASVAVIGTIVVLFPALASALFGLGRASPESLDLVRVYGGGNATALRKVALPGALPSLFAAARVSVPGAVTGALLAEWLSTGKGIGGSIQKFSAAAKFDDLWASVAIITAITLLLYNLVQLLENVVLARMGMLTERPGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDH0</accession>
    <name>A0A0Q8VDH0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cobalt ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_05695</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894135.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55148">
        <property type="protein sequence ID" value="KRC55148"/>
        <property type="gene ID" value="ASE19_05695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="870493at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03225">
        <property type="entry name" value="ABC_cobalt_CbiO_domain1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015856">
        <property type="entry name" value="ABC_transpr_CbiO/EcfA_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="2"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="288"/>
            <end position="519"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="340"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="320"/>
            <end position="327"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="545" mass="57675" checksum="1D930A0E4697562B" modified="2016-01-20" version="1">MMELRALRFGYDDRTRVLDGIDLRIEAGELVVLAGPTGVGKSTLLGVVAGLVPGFTGGVLHGEVELDGTSVIDLPARERAHAVGYVGQNPPAWFVTDTVEEELAFGMEQLGLAPATMRRRVEETLDLLGIAELRHRDLRTLSGGQQQRVAIGAVLTTHPRLLVLDEPTSALDPTAAEDVLATLTRLVHDLGVSVLLAEHRLERVVPFADRLCVLGGDPERPGTIRIGDPAEVLRDAPTAPPLVELGRLAGWDPLPLTVRDARRRAPALLERLPAAPRRLAPQAHEPVVDVRRLVVSHGRTPVLREVDLALRPGTVTALMGRNGAGKSTLLWTLQGRHTPASGTVRIAGSSPSDLRPEQRRTTTGLVPQSPADLLYLETVAEECAAADQSARAGGGTCAGLLERLAPGIVPETHPRDLSEGQRLALAVAIVLTARPPVLLLDEPTRGLDYPAKHALAEVVRELATEPGAERAVLVATHDVEFVAQVADELVVLAEGEVVSHGPVAAAVAESPAFAPQVTKVLGRGWLTVADVAAALDAAPPAGDRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDH2</accession>
    <name>A0A0Q8VDH2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Exodeoxyribonuclease III</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06355</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA repair enzymes AP/ExoA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894464.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55055">
        <property type="protein sequence ID" value="KRC55055"/>
        <property type="gene ID" value="ASE19_06355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1893707at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008853">
        <property type="term" value="F:exodeoxyribonuclease III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09086">
        <property type="entry name" value="ExoIII-like_AP-endo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004808">
        <property type="entry name" value="AP_endonuc_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037493">
        <property type="entry name" value="ExoIII-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43250">
        <property type="entry name" value="PTHR43250"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00633">
        <property type="entry name" value="xth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51435">
        <property type="entry name" value="AP_NUCLEASE_F1_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="4"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="29068" checksum="BCAACA3EDFDBCE7F" modified="2016-01-20" version="1">MRLATWNVNSLRTRIDRVEAFLDRHEIDVLAVQETKAREEQLPLMGLQARGYEIAAHGLDQWNGVALISRVGLDDVTVGFPDQPGWGDSSVVEARALGATCGGVRVWSLYIPNGRKPDDPHYTYKLDWLARLQTAAGAWLDTPTALVGDWNICPTDDDVFDVAQFKNSTHVTPAERAAFQAFLDDGWSEVTRAFAPGYTYWDYYRQRFERDRGLKIDFVLGSSSFAERVTGAFIDREERDPSVFSGAPSDHAPVVVDLAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDW6</accession>
    <name>A0A0Q8VDW6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10745</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52880">
        <property type="protein sequence ID" value="KRC52880"/>
        <property type="gene ID" value="ASE19_10745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1400891at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017517">
        <property type="entry name" value="CHP03083_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010872">
        <property type="entry name" value="MDMPI_C-term_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024344">
        <property type="entry name" value="MDMPI_metal-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07398">
        <property type="entry name" value="MDMPI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11716">
        <property type="entry name" value="MDMPI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03083">
        <property type="entry name" value="TIGR03083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MDMPI_N" evidence="2">
        <location>
            <begin position="18"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="domain" description="MDMPI_C" evidence="1">
        <location>
            <begin position="171"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07398"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="271" mass="28988" checksum="92119280C449875E" modified="2016-01-20" version="1">MSDGELLGRYVDAWWSSVQDFVALLEELGPDDWARPTDLAGWDVKAVASHTAHLESLLAGGPDEQADIGDAPHATSPMSQFTEIGVVTRRDREPASIVDELRTRTAERYAALQAAPPTDPGATAHGIFGLIGWNTRTLLRNRPLDVWMHEQDVRRAVGRPGGMDSAGAQHTADYLVEAFGFVVGKRVSPPAGTTAVLEVAGSDPFAVGIGEDGRGRRLDVAPADPDVRLTMDRETFIVLAGGRRPAVPGAVRISGDQDLGQRIADRLATTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE83</accession>
    <name>A0A0Q8VE83_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07615</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895370.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53939">
        <property type="protein sequence ID" value="KRC53939"/>
        <property type="gene ID" value="ASE19_07615"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="91" mass="9620" checksum="58AF445B5CDBC2B9" modified="2016-01-20" version="1">MTGLREQAERLADMVVEIAGLDSRRGAVVDTLVGAELHLGRELLLVAVVEELAHRCAASPGSWDTSGELTRAAVDTAADHCRDRGPTGGIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF50</accession>
    <name>A0A0Q8VF50_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12785</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895695.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53232">
        <property type="protein sequence ID" value="KRC53232"/>
        <property type="gene ID" value="ASE19_12785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01782">
        <property type="entry name" value="MCEVIRFACTOR"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="43"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="120"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="330" mass="34402" checksum="4E855D675D11B972" modified="2016-01-20" version="1">MSRDITPDRLAVRGIIGTLLLILVVAAAMNINKLPLIGNSDVLHVDFAEAGGLKGGDAVMISGAQVGKVREVGIDGDHVTADIVLTDDSVELGDLTEARIITITLLGRAAVELEPRGTGDLQAGERIPVERTSSPYNLTSTLNELTETTAAIDKSQLAAALDQASRTLNASSPDLGPALEGITALSRAVSSNDDELRSLVARANGVTDVLASRNQQIASLLGSGRSLLSELDSRQEVVTGLLADARELSAQLRVLLKDTDDVLGPALDELDGVVDVLNRNKANLQAAIVGLQGYATAFGEAISTGPWFDAYIQNLTSPGTLAPIISGALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF85</accession>
    <name>A0A0Q8VF85_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ornithine--oxo-acid aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07250</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895627.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54195">
        <property type="protein sequence ID" value="KRC54195"/>
        <property type="gene ID" value="ASE19_07250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="572533at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="428" mass="46995" checksum="8AC26245AF2EE0DE" modified="2016-01-20" version="1">MHDYDAFNFDSKAEMLEKSAHYWNPDKTKFWSDSGIDLVIDRREGYLLWDMDGRRLIDVHLNGGTYNLGHRNPEVVAAVKKAMDRFDVGNHHFPSLGRTALAEALVESAPAGLTKVAYASGGGEAIDIALKSARHAMQKRKIVSIVKAYHGHTGLAVATGDDRFSKLFLSDRPEEFPQVPFNDLPAMEQALKGRDVAAVIMETIPATYGFPLPNPGYLEAVKALCEKYDALYIADEVQTGLMRTGELWGITKHGIEPDILVSGKGLSGGIYPIAAVLLSERAGAWLREDGFGHISTFGGAELGCVAALKTLEISRRPEVRSMVHYIADLVGSGLRQVQAQHPDWFVGIRQNGVVLGLEFAHPEGAKYVMRELYKLGVWAIFSTLDPRVLQYKPGILMTPDLVEELLDRTALAISRAAADPAVSRRKAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFE3</accession>
    <name>A0A0Q8VFE3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09865</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a quinol + H(+) + oxidized coenzyme F420-(gamma-L-Glu)(n) = a quinone + reduced coenzyme F420-(gamma-L-Glu)(n)</text>
            <dbReference type="Rhea" id="RHEA:39663"/>
            <dbReference type="Rhea" id="RHEA-COMP:12939"/>
            <dbReference type="Rhea" id="RHEA-COMP:14378"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="ChEBI" id="CHEBI:133980"/>
            <dbReference type="ChEBI" id="CHEBI:139511"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the F420H(2)-dependent quinone reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894657.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52722">
        <property type="protein sequence ID" value="KRC52722"/>
        <property type="gene ID" value="ASE19_09865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1595916at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004378">
        <property type="entry name" value="F420H2_quin_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04075">
        <property type="entry name" value="F420H2_quin_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00026">
        <property type="entry name" value="hi_GC_TIGR00026"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00029371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="156" mass="17631" checksum="CF2C3C14EB9A212E" modified="2016-01-20" version="1">MGLFTPVAIKLGSQPWMPKLLPQITWTDQHLQRLTGRRVSLVGLAGLPSLLLTVKGRKSGIPRSTPLLCVPWQGGWLIAGSSFGAPKPPVWSANLRAAETVEVDYHRRHHVCTWRELTGEEKDRAWGHMVTVWPNYDKYVEWTDRVIPVFLLTPTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFF1</accession>
    <name>A0A0Q8VFF1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">RNA polymerase sigma factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_12945</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895723.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53261">
        <property type="protein sequence ID" value="KRC53261"/>
        <property type="gene ID" value="ASE19_12945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1992113at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006950">
        <property type="term" value="P:response to stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000838">
        <property type="entry name" value="RNA_pol_sigma70_ECF_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01063">
        <property type="entry name" value="SIGMA70_ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="4 5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 5" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="42"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="7">
        <location>
            <begin position="141"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="201" mass="21745" checksum="6B34E9736CFB5839" modified="2016-01-20" version="1">MDPVTGNAAGAPHQGAPAGAVPDLGALLKRSARGDEAAFAELYDATAARAHGLVLRVVRDRAQAEEVTQEVFLEVWRQSGRYDADRGSALAWLMTIAHRKAVDRVRSAEAATRRDVTYEETNRSVAHDETAEAAHASLEARRVRAALAHLTDVQREAIELAYFGGYTHTEVAALLDLPVGTAKTRIRDGLIRLRDSIGVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFL5</accession>
    <name>A0A0Q8VFL5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH_17 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13495</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895822.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53360">
        <property type="protein sequence ID" value="KRC53360"/>
        <property type="gene ID" value="ASE19_13495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2076478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041657">
        <property type="entry name" value="HTH_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010093">
        <property type="entry name" value="SinI_DNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12728">
        <property type="entry name" value="HTH_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01764">
        <property type="entry name" value="excise"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_17" evidence="1">
        <location>
            <begin position="14"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="69" mass="7673" checksum="03EE45F97B0405C5" modified="2016-01-20" version="1">MTAAAGPADERPRWLSITGAAVWVSLSAKTIRRKIAAGELRAYRCGKTIRIKTDDLEAMMRPVRSAKDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGG6</accession>
    <name>A0A0Q8VGG6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896966.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53537">
        <property type="protein sequence ID" value="KRC53537"/>
        <property type="gene ID" value="ASE19_14480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1115365at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021139">
        <property type="entry name" value="NYN_MARF1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01936">
        <property type="entry name" value="NYN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NYN" evidence="1">
        <location>
            <begin position="7"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="185" mass="20981" checksum="AC548F1689D47F02" modified="2016-01-20" version="1">MADTRTTHVLVDGENLDATLGTSILGRRPRPEERPRWERLLQFVERQWGQDTNGLFFLAANSELPMSFVQALLAIGFRPIPLSGGPGQKVVDIAIQKTLAELKKREGDVVLVSNDGDFVNHMEDLLDGRRVGLVGFAEFRNAAFAQLQERGLEFFDMEYDVHAFNERLPRVRIIPIDEFDPTLFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHC0</accession>
    <name>A0A0Q8VHC0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Limonene-1,2-epoxide hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07040</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895268.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53837">
        <property type="protein sequence ID" value="KRC53837"/>
        <property type="gene ID" value="ASE19_07040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1907687at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12680">
        <property type="entry name" value="SnoaL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="14"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="16859" checksum="CEC6B0F2FD22A737" modified="2016-01-20" version="1">MNSTRTPAEAVLGLWRTLSARDWDGLADWVTDDCIYVDMPVGPTLAARGPVDIVKRLQVGLRDLAAYENHDGLLVADGDVVMYEHSETWTFASGEVVELPFATVHRVRDGRVCLWKDYWDFGAVANSAPPDWMEQLQSADISWVYDATGEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHD4</accession>
    <name>A0A0Q8VHD4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">UTP--glucose-1-phosphate uridylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_06875</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UDPGP type 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895240.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53809">
        <property type="protein sequence ID" value="KRC53809"/>
        <property type="gene ID" value="ASE19_06875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="710317at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003983">
        <property type="term" value="F:UTP:glucose-1-phosphate uridylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006011">
        <property type="term" value="P:UDP-glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002618">
        <property type="entry name" value="UDPGP_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016267">
        <property type="entry name" value="UDPGP_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43511">
        <property type="entry name" value="PTHR43511"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01704">
        <property type="entry name" value="UDPGP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000806">
        <property type="entry name" value="UDPGP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="3">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>UTP</name>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="157"/>
        </location>
        <ligand>
            <name>UTP</name>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>UTP</name>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="186"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="216"/>
        </location>
        <ligand>
            <name>UTP</name>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="363"/>
        </location>
        <ligand>
            <name>UTP</name>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000806-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000806-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="462" mass="50052" checksum="0CE536B503DDA14A" modified="2016-01-20" version="1">MSGRSSGLEMARAKMAAAGVDPVAIDTFAHYYRLLEHGETGMIPEASIDPVDIESLADAEVPDDVAADAIGRTVAIKLNGGLGTSMGMERAKSLLCVRRGLSFLDIIARQALHLRSAYDARLPLIFMNSFRTSGDTLHALGRYDELAVGDLPIEFLQNKEPKLLADGLKPVEWPKDPDLEWCPPGHGDIYTALRGTGLLDKLIAEGYRYAFVSNSDNLGAVPAPRVAGWFAASGAPFAIEAVRRTASDKKGGHFARRKADGRIVLRETAQTLPEDIEALADLSRHRFCSTNNLWFDLQAMKDKLDERDGVLGLPLIRNEKTVDPADPDSPKVIQVETAMGAAIEVFAGARLIEVGRDRFIPVKTTNDLLVLRSDVYEIGTDFALTQVATDVPYVELDDDHYKVVGEFDKRFPEGAPSLAKASSLKVEGDWTFGHGVQVVGDVELAGKGAQRIAAGEVLSGNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHD7</accession>
    <name>A0A0Q8VHD7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_13420</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895808.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53346">
        <property type="protein sequence ID" value="KRC53346"/>
        <property type="gene ID" value="ASE19_13420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="665798at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013595">
        <property type="entry name" value="Pept_S33_TAP-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08386">
        <property type="entry name" value="Abhydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360043" evidence="3">
        <location>
            <begin position="33"/>
            <end position="545"/>
        </location>
    </feature>
    <feature type="domain" description="AB hydrolase-1" evidence="4">
        <location>
            <begin position="101"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="domain" description="Abhydrolase_4" evidence="5">
        <location>
            <begin position="399"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="489"/>
            <end position="515"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF08386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="545" mass="58606" checksum="B2302EB71F5A11A9" modified="2016-01-20" version="1">MKRALTIIASGLTAAALVVPAANGTAAPTAQGKDKSHGLPSYTPPAPAWGECASARLKAAGAECAMLEVPLDYAKPGGDKIHIAVSRKLHTDPDYKGMIAVNPGGPGGSGLIYSILGGAIPDGVGAKFDWYGFDPRGVGSSEPSLSCDPDYPGAGYDRPNYVPVRAADKAWWRTTTRDYADACKDADAKELLGHLHTTDVARDLDSLRKAAGQEKLNYYGFSYGTYLGQVYATLFPKQVGKMVWDGVLNADNAFYEANLDQNVQFDKNLDTYWKWMAAHDTAFGLGTDWRAIKRGYYQLRRQLDATPAAGGQLGPDELDDVMLSAGYYVYDWVGLGEAYAKLVKTGDGADILANYGGPGDDNGFAVYNGVQCTDAVWPGWRRTERDAWRIHRKHPFLTWGNTWYNAPCLNWPAPSRTAIQVSGRQVTSRILMIGETNDAATVFSGAIATRKAFPSSYLIEGVGGTTHSGSLSGIACTDDTIARYLDTGELPRRRPGNHSDQLCDPVPAPEPEPAAALQRRAATVTGDRMPAVLRAGLQEAQATGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHG6</accession>
    <name>A0A0Q8VHG6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_03345</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892873.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56856">
        <property type="protein sequence ID" value="KRC56856"/>
        <property type="gene ID" value="ASE19_03345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="179"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="224"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="276"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="303"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="362"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="511"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="537"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="575"/>
            <end position="596"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="626"/>
            <end position="648"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="654"/>
            <end position="675"/>
        </location>
    </feature>
    <feature type="domain" description="MMPL" evidence="7">
        <location>
            <begin position="44"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="domain" description="MMPL" evidence="7">
        <location>
            <begin position="464"/>
            <end position="684"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF03176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC56856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="701" mass="73200" checksum="A6DEA6B7B6E4AFD0" modified="2016-01-20" version="1">MFRWIGDLVTRRARGVLALGVLGVVLAAVVGVGAFSKLETEGFDDPASDSSRAAALLEDRFAGTSDYVLVVEAVDGDVDSPASAAAGRELTERLRSDPDLADVTSYFDSRAGPLRATDGGHALVTATTAKGTDADPGRVLDEYGSTDGALRVDIGGGEVVGEEIGSQIGKDLGLAESIAIPLILVLLVLAFGNVVGALVTLGVGMAAILGTFAELSILGSATDVSIYAVNLTTGLGLGLAVDYGLLMVARVREERAAGRDHTAAVRRAVETAGRTITFSATTVAVALSALLVFPMYFLRSFAYAGIGVMLITAFSAVVILPAALSLLGDRIDAWRVPRVRGIRGEEAPAWARLARFVVRRPVLSALPVLAGLLLMAVPLAGIELGTPDDRVLPTSASSRQAGDLLREDFAGDGTHPISVVTTSAVDEADLASYAERLGALPGVVRIETRPGEGASLVSVVTDLDPRSGAARDLVEDVRAVPPPDGVEALVGGASAELHDQMTGIGNRLPIVAGWLVLTTMVILFLFTGSVVQPVRALLLNAVGLAATLGAMVWVFQDGHLAGLLGFTPQPMDSSMMVLLFCVAFGLSMDYEVFVMGRIKEMRDLGRDNEQALVHGLAHTGRIVSTAAALIAISFFAFLVSSVSFIQFFGLGTGLAILIDATLVRGVLVPASIRLLGERAWWAPRPLRALHRRFGLSEGVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHQ3</accession>
    <name>A0A0Q8VHQ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03650</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892925.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56908">
        <property type="protein sequence ID" value="KRC56908"/>
        <property type="gene ID" value="ASE19_03650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1704357at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="144"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="179"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="22739" checksum="3E46ABA7E6F851FE" modified="2016-01-20" version="1">MRGARGWHALTAVVAIVAIGLQLVLVIQGGRVLDEVEPPALGLRLARFIAYFTIQSNLLVAAATVLLTLSPGRDGAAFRALRLAATVGITVTGLVHFFLLRPLLDLDGADWAADKLLHMVVPVLAFVGWFAFGPRPRIDGRAIAVAFAWPIAWLAVTLAVAGATRWVPYPFLNFREEGWAHVGVVCVGITVLFAALIAGFRYADRRLAPRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI54</accession>
    <name>A0A0Q8VI54_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">MFS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_03295</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892864.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56847">
        <property type="protein sequence ID" value="KRC56847"/>
        <property type="gene ID" value="ASE19_03295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1558246at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="54"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="85"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="110"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="143"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="169"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="208"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="232"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="261"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="297"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="329"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="355"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="394"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="420"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="20"/>
            <end position="443"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="446" mass="44837" checksum="91DE7C8815EA6B2B" modified="2016-01-20" version="1">MTAVVEATVGSPWRGRHARTTVGVFSLAFLFAFEALAVATVMPDVAAELDGLRWYAVAFAAPLAAGVVALAASGPQVDRLGPGPALRLGLVVFCAGVVIAGLAPNMPVFVLGRLVHGYGGGVLGVALYVVIAQAYPEAMRPRVFAVLTTAWVLPALVGPVLAAQVAEQVGWRWVFLGVPVVAVAAWLLVADAPSRPGSARAGEGRMRWALAVAIGVLAVSVGGQQVVDGWPLLVAAGLLAVVVGGRRVLPTGAWSLRGGLPAVLGSRAAIGTAMAAAEVYVPLLLVLRRDVTLPEAGWVLTVGAVTWSAGAVLAARWRALADQPGRVRLGALLLGVGIAGFATVSLAGVPLAVVVAAWGVAGLGIGMAFSTLSVLALATAAAGEEGRTSSALQLNDYLANSVGVALGGVVFAAFADSAPATAATWLVLAAAAVAVLALVPATRLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI67</accession>
    <name>A0A0Q8VI67_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">D-beta-D-heptose 1-phosphate adenosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_03380</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892880.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56863">
        <property type="protein sequence ID" value="KRC56863"/>
        <property type="gene ID" value="ASE19_03380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1629121at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014036">
        <property type="entry name" value="DeoR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001034">
        <property type="entry name" value="DeoR_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018356">
        <property type="entry name" value="Tscrpt_reg_HTH_DeoR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00455">
        <property type="entry name" value="DeoRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08220">
        <property type="entry name" value="HTH_DeoR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00037">
        <property type="entry name" value="HTHLACR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00420">
        <property type="entry name" value="HTH_DEOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00894">
        <property type="entry name" value="HTH_DEOR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51000">
        <property type="entry name" value="HTH_DEOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH deoR-type" evidence="4">
        <location>
            <begin position="3"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="255" mass="26333" checksum="772747964E081DE0" modified="2016-01-20" version="1">MYAEERQQAIARQVGDRGRMSVAEIAELFDVTTETVRRDLTALEALGVLRRVHGGAVPASALSTLEPGIVERDAANTEAKAQIARAALDLLPPPGASILLDAGSTTARFADALPGSHRLVVFTHSVSIAARLAGNAGIELHLLPGRVRTNTHAAVGAATVAAVGALRVDMAFMGANGVSVGHGLSTPDSEEAATKRSFVLSAERVVGLVDSSKAGVETAVRFAALDEVDTLVTDRGLRPADRKAYAAAGVEVVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI78</accession>
    <name>A0A0Q8VI78_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Glycerol-3-phosphate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_14780</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896916.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53586">
        <property type="protein sequence ID" value="KRC53586"/>
        <property type="gene ID" value="ASE19_14780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="360065at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009331">
        <property type="term" value="C:glycerol-3-phosphate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004368">
        <property type="term" value="F:glycerol-3-phosphate dehydrogenase (quinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006072">
        <property type="term" value="P:glycerol-3-phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.870">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031656">
        <property type="entry name" value="DAO_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038299">
        <property type="entry name" value="DAO_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000447">
        <property type="entry name" value="G3P_DH_FAD-dep"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11985">
        <property type="entry name" value="PTHR11985"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16901">
        <property type="entry name" value="DAO_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01001">
        <property type="entry name" value="FADG3PDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="6">
        <location>
            <begin position="17"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="domain" description="DAO_C" evidence="7">
        <location>
            <begin position="412"/>
            <end position="519"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF16901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="538" mass="55770" checksum="A53BC1BEB8AD5F31" modified="2016-01-20" version="1">MSNRITAGLVGAPTDVDVVVVGLGVTGAGVALDAVSRGLTVLAVDAHDLAFGTSRFSSKLVHGGLRYLASGQVAIAHESAVERGILMETTAPHLTRPMPSLIPLAAGVSRPMGALAGAGFLGGDLLRRAARTSADTLPRPRRLTAAETRRLAPPLRADGLRGGHLGWDGQLEDDARLVTTIARTAADRGAAVHTHARVLSATGVSRLAGARTSTTEFSVELRDELTGETLDVTCRTVVNAAGVWAGDLVDDVRLRPSRGTHLVLRAEALPQLSVAVFAPIPGETNRFVLVLPQPDGPFYVGLTDEPVDGPIPDVAEPTEVEIGFLLDVVSASFARPLRRSDVVGAFAGLRPLLDTSSGGDDSTADLSRKHAVLTSRTGVITIVGGKLTTYRRMAEDAVDAAVASAGLAAGPCVTASLPLAGAAPRSALAEEAARASSPGHARLIRRYGADAGLVLAASVDATGWTEDELLATIHPDLSTVWAELFFGITHEGAADVADLLDRRTRIGLVPADRELAVAAAEAALECCRNPRRSGESDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIA6</accession>
    <name>A0A0Q8VIA6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Carrier domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08350</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54064">
        <property type="protein sequence ID" value="KRC54064"/>
        <property type="gene ID" value="ASE19_08350"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carrier" evidence="1">
        <location>
            <begin position="10"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="87" mass="9715" checksum="91754EC419BD915A" modified="2016-01-20" version="1">MPERDEIFELVRDYVQRVVLRGESGIAHDSPLLEWGVLNSITIVRLLAFVRDRVGVEIPATEMTADNFRTLDSITSLVVTSLTRGTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VID4</accession>
    <name>A0A0Q8VID4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">2-dehydro-3-deoxy-phosphogluconate aldolase</fullName>
            <ecNumber evidence="3">4.1.2.14</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11350</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-dehydro-3-deoxy-6-phospho-D-gluconate = D-glyceraldehyde 3-phosphate + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:17089"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:57569"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.1.2.14"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the KHG/KDPG aldolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.2.14" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895189.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53634">
        <property type="protein sequence ID" value="KRC53634"/>
        <property type="gene ID" value="ASE19_11350"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008675">
        <property type="term" value="F:2-dehydro-3-deoxy-phosphogluconate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00452">
        <property type="entry name" value="KDPG_aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000887">
        <property type="entry name" value="Aldlse_KDPG_KHG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031337">
        <property type="entry name" value="KDPG/KHG_AS_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031338">
        <property type="entry name" value="KDPG/KHG_AS_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30246">
        <property type="entry name" value="PTHR30246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01081">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01182">
        <property type="entry name" value="eda"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00159">
        <property type="entry name" value="ALDOLASE_KDPG_KHG_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00160">
        <property type="entry name" value="ALDOLASE_KDPG_KHG_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="194" mass="19355" checksum="5BC0873CC34FC9A7" modified="2016-01-20" version="1">MPVVVIDDLATAVPLARALVDGGLPAIELTLRTAVALDALRAIAAEVPEIVLGAGTITTPAQAAAAVEAGARFLVSPGTTPALLEAMLETGVPFLPGTSTVSEVMTVLDAGLTEMKFFPAEAAGGAPYLKSVAGPLPQARFCPTGGITPASAPGYLALPNVGCVGGSWLTPADAVASGDWERISKLAAEAAALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIE8</accession>
    <name>A0A0Q8VIE8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molybdopterin-guanine dinucleotide biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12165</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895207.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53650">
        <property type="protein sequence ID" value="KRC53650"/>
        <property type="gene ID" value="ASE19_12165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="651103at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025877">
        <property type="entry name" value="MobA-like_NTP_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12804">
        <property type="entry name" value="NTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NTP_transf_3" evidence="1">
        <location>
            <begin position="10"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="193" mass="20361" checksum="748A871C154F1568" modified="2016-01-20" version="1">MELGLSGFAAVVLAGGQASRLGGADKATIELGGRSLLDRALDAVVDAGEVVVVGQQVPTERPATFVLEDPRFGGPAAGLLTGRDSLLRTFPTIAVLAVDMPHLTSSTFRRLHEAAVGHEGAVLTRDGRRQLAFVVETARLDAVRPHREAEHGLAVRALLEQLDLVDVASTGSEARDVDTWSDLRDLASEAEGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIF5</accession>
    <name>A0A0Q8VIF5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lipid-transfer protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894063.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55011">
        <property type="protein sequence ID" value="KRC55011"/>
        <property type="gene ID" value="ASE19_06090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="311458at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thiolase_N" evidence="1">
        <location>
            <begin position="21"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="395" mass="41592" checksum="337FF766F32AE811" modified="2016-01-20" version="1">MSTVAIAGVGMHPWGKWGRNFTEYGVHAARAALKDAGIAWSDVDLVVGGETVRNGYAGYVAGSTFAQALGWNGARIATSYAACATGAQAIDTARARIMAGLCEVALVVGADTTPKGFLAPNAGERWSDPDWLRFRLLGMTNPAYFALYARRRMDLYGATSEDFAQVKVKNARHGLANPNARFRKEATVEDVLASPVVSDPLHLLDICATSDGAAAVVLCSVEYARKHGIANPVRVAAVSTVTPTFPNTVIDMPLLSTDSSAVVGVPERTFKEAIGQAAYEEAGIGPEDVDVAEVYDLSTALELDWIEDLQLCKRGEAEVLLRAGDTTLGGRIPVNPSGGLACFGEAVPAQAIAQVCELTWQLRGQATGRQVEGARVGITANQGLFGHGSSVLLSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIG4</accession>
    <name>A0A0Q8VIG4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">IclR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_23750</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893983.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57349">
        <property type="protein sequence ID" value="KRC57349"/>
        <property type="gene ID" value="ASE19_23750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="370329at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="5"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="69"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC57349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="254" mass="27359" checksum="3D94311EB51EBC76" modified="2016-01-20" version="1">MDKGASVVERVGTLLRSLAAREPDGASTTGLAAATGLPRPTAHRLLVALREEGMVERDETSAAWHLGPECFLLGAAATTRHDIAPVAREAVLRIARETGESAYFSVRRGDETVCLLREDGSFPIRSHVLHEGIRFPLGVASAGLVILSFLPDREREAYLSRARLAARHGRQHGPAALRAQVEATRERGYAVNPGLIVTGSWGLGAAVFDAHGEPRWALSINGIESRLAPPRQEELGQLLLREAHQLGARMAGPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIQ5</accession>
    <name>A0A0Q8VIQ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pilus assembly protein CpaF</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23985</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894018.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57384">
        <property type="protein sequence ID" value="KRC57384"/>
        <property type="gene ID" value="ASE19_23985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="473670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007017">
        <property type="term" value="P:microtubule-based process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022399">
        <property type="entry name" value="HlxAse/secretion_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017975">
        <property type="entry name" value="Tubulin_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03819">
        <property type="entry name" value="heli_sec_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00662">
        <property type="entry name" value="T2SP_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00227">
        <property type="entry name" value="TUBULIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="2">
        <location>
            <begin position="257"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="389" mass="40744" checksum="0AE658F5ADD5EA29" modified="2016-01-20" version="1">MSPDDLAVLVDEVRRRLSSSPGALTPHRVADALRAAGRPVGDTTVLAVYEGLRREVVGAGPLDPLLSLPGVTDVLVNGPGPVRIDRGAGLEDTSVRLGSEEECRRLAQRLVASGGRRIDDAAPWADVRLPDGTRCHAVLAPIAQPGTAISLRIPRRDGFSLAELHAAGALTDEAHELLGQVVAARLAFLVSGGTGSGKTTLLAALLGEVDPHERIVVVEDAAELRPDHPLVVGLEARPPNLEGAGAVVLRDLVRQALRMRPDRLVVGEVRDAAVVDLMAAMNTGHEGGCGTLHANSASDVPARVEALALTAGLGRAAAHSQLASAVDLVLHLERDRDSGRRRLGEIAVLVRDPVGWVTTEVAVAFTSDGDLVTGPGSRRLLDLLDGRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ38</accession>
    <name>A0A0Q8VJ38_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_23810</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894046.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57412">
        <property type="protein sequence ID" value="KRC57412"/>
        <property type="gene ID" value="ASE19_23810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="969875at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PKS_ER" evidence="3">
        <location>
            <begin position="15"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="351" mass="37015" checksum="357CB8135A6CC8F2" modified="2016-01-20" version="1">MSYDRTHVRAWAAHASTDPLVPTVIERREVGADDVLIEIEYAGICHSDIHTVRGDWGPQPYPVVPGHEIVGIVREVGSAVTRHRVGDRVGVGCFVRSCLECANCLRGDEQFCLKGGVGTYAATDRDGTSTQGGYSTHVVVHEHFALVVPDGLDPAAAAPLLCAGITTYSPLKRWGAGPGRKVAVVGLGGLGHMGVKIAHAMGAEVTVLSQSLKKQEDAVRLGADHYHATSDPATFDVLRGTFDLVLNTVSASIDVNAYLGLLAVDGAFVNVGAPPAPFSVDAMSLIYGRHAFAGSMIGGIAETQEMLDFCAEHGLGADIEVIAADGINEAYERVLASDVRYRFVIDAATIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ92</accession>
    <name>A0A0Q8VJ92_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">DNA polymerase III subunit delta</fullName>
            <ecNumber evidence="4">2.7.7.7</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_23880</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894000.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57366">
        <property type="protein sequence ID" value="KRC57366"/>
        <property type="gene ID" value="ASE19_23880"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1971388at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004622">
        <property type="entry name" value="DNA_pol_HolB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00678">
        <property type="entry name" value="holB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0235">DNA replication</keyword>
    <keyword evidence="3" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="1 4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="384" mass="41839" checksum="1813D3852249BA73" modified="2016-01-20" version="1">MTGIWDTLVGQRPTIDLMQKAVAGHGMTHAWLFTGPPGSGRSNAAVAFAAALQCPQGGVGPDCPDRCHACHTVLAGSHADVSLIRTEKLSIGVDEVRDLVRRASLSPMGDRWQILVVEDADRLTDQACNALLKAIEEPNGRTVWMLCAPTVEDVLPTIRSRCRLVTLATPTTQEVAGFLVARGIEERLASYAARASQGHIGRARALAFDEAVRTRRQEVVAIPARLTNLGRCMDAAARLSVTSKEEADEITAQLDAKEKTDLDTAYGVVERGRRPREYGPALAALEKAQRTRAKRRHLDMVDRGLTDLVSVYRDAIAIATGAPGALVNEEIRDQVEEIARSTTPELNLRRIGWIFAAREQMLEFNVPVALALESMMVALKAPQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJA0</accession>
    <name>A0A0Q8VJA0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Phosphate-binding protein PstS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_07530</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Part of the ABC transporter complex PstSACB involved in phosphate import.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">The complex is composed of two ATP-binding proteins (PstB), two transmembrane proteins (PstC and PstA) and a solute-binding protein (PstS).</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the PstS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895354.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53922">
        <property type="protein sequence ID" value="KRC53922"/>
        <property type="gene ID" value="ASE19_07530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1222928at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042301">
        <property type="term" value="F:phosphate ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035435">
        <property type="term" value="P:phosphate ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005673">
        <property type="entry name" value="ABC_phos-bd_PstS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024370">
        <property type="entry name" value="PBP_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12849">
        <property type="entry name" value="PBP_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002756">
        <property type="entry name" value="PstS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00975">
        <property type="entry name" value="3a0107s03"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360083" description="Phosphate-binding protein PstS" evidence="5">
        <location>
            <begin position="29"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="domain" description="PBP_domain" evidence="6">
        <location>
            <begin position="38"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="28"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR002756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF12849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="365" mass="37453" checksum="86BE42289E3D775E" modified="2016-01-20" version="1">MKLKSLRNAAVPGVAALALLMSACGASNESGNDTDSTDGGLSGELNGGGATSQEKAQDAWKASFQGANGGNLVVNYALLGSTDGRSQFISKALSFAGSDSYIKDEDLTKAKERCGGTIVEVPAYISSIAIAYNLPGVDELKLDAATIAKIFAGKITTWNDQAIAAQNDGVELPATKISPVHRSDDSGTTKNFTDYLGKVAPGDWKYEAEDAFPVSGGLSAEGTSGVVKQIGDVEGAIGYADASQAGDLSHVSVKVGDAYVAPSPEGAAKTVEVSPVVEGRDATDIAVDVDRTTTEAGAYPVILLSYLIACETYDDATEAANVKGYLEYIVSDEGQQDAADNAGSAKLAATTAKQAQDIVAKISSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL34</accession>
    <name>A0A0Q8VL34_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05775</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894119.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54957">
        <property type="protein sequence ID" value="KRC54957"/>
        <property type="gene ID" value="ASE19_05775"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="190" mass="20515" checksum="2C71770442C54085" modified="2016-01-20" version="1">MVTTGFTLDWTPPPGWWASRAGDVESGAWRSTLPEGGELFERDQARFAAFVAAHEHDRQAWLAVVGSVEGAPRITAAGWLDVRMPADLSELERRLQASVTSLPDGILTRQVNRVEVDGRAALTCLDLLGRSTDNLGAVIHERAFVAIAQPQVDALLLLDVSTTDLLGFDDLLGSVTAVAAGVQFIPKERQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLR5</accession>
    <name>A0A0Q8VLR5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06645</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894507.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55105">
        <property type="protein sequence ID" value="KRC55105"/>
        <property type="gene ID" value="ASE19_06645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="736429at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13519">
        <property type="entry name" value="VWA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="321"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="103"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="351" mass="37566" checksum="9AEC2D0611EFACF9" modified="2016-01-20" version="1">MELTWNGGETGFRWPWLVPVLVLLVVGLMVWWTRSRGRRTAAGASYVAHAARLRALPRYRALVRRQVVLGTCLTVAALVACAGAIVLGGRVQERQTHAQEDRTRDIMLCLDSSGSMAEVDAEVVREFRTIVGGLRGERVGLTIWSGVAITVFPLTDDYDYVLEQLGEAEDAFGAGGVYSEAYSVYTAGTVIDWDIQSQLGDGLASCVQRFDRRDEDRSRAIVLASDNEPIGQGVYDLPAAAELAREANVVVHAIAPPTTGDRPSAARLFSDAATSTGGTFSMLGDDGSAAGVIKAIGDLDTSEIERPPVVQVLDRPRLGTVLAGIGVGGLGVVWLAQGLLAVRDRREEEAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMK8</accession>
    <name>A0A0Q8VMK8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Arsenic-transporting ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02650</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the arsA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892757.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56739">
        <property type="protein sequence ID" value="KRC56739"/>
        <property type="gene ID" value="ASE19_02650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1225869at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025723">
        <property type="entry name" value="Anion-transp_ATPase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040612">
        <property type="entry name" value="ArsA_HSP20-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016300">
        <property type="entry name" value="ATPase_ArsA/GET3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008978">
        <property type="entry name" value="HSP20-like_chaperone"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10803">
        <property type="entry name" value="PTHR10803"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02374">
        <property type="entry name" value="ArsA_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17886">
        <property type="entry name" value="ArsA_HSP20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00345">
        <property type="entry name" value="GET3_arsA_TRC40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360196" evidence="2">
        <location>
            <begin position="20"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="domain" description="ArsA_ATPase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="domain" description="ArsA_HSP20" evidence="4">
        <location>
            <begin position="330"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF17886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="399" mass="42393" checksum="8B4467C0E8728D02" modified="2016-01-20" version="1">MRIVLFTGKGGVGKSTVAAGTAALAAARGLRTLVISTDAAHSLADAYGAASAGPGHGGAEPMEVAPDLFVQQVDAQLRFEQSWADIQRYLLSVLDAAGMDPVAAEEMTVIPGAEEVLALLELRQHARSGRWDVIVVDCAPTAETLRLLALPEALGWYIERLLPIQRRLVKALRPVLNRAAGVPMPGDAVFDAITRLHAELDDVHELLSGPDASVRLVLTPEKVVLAEARRAFTSLCLFGYRVDGVVANRIFPADDADPWRAAWVAAQTEVLGEVAQSFNGLPVFTSEYQASEPVGVDALADLARALYDGADPLAAPVGDGPFRVTRPDSGGAVVHLALPFVSRAEVDLARNGDELVMTVGSYRRLLTLPPGLARLKVAGARVVDGELRVRFAEPALEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNJ9</accession>
    <name>A0A0Q8VNJ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_22660</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892613.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58870">
        <property type="protein sequence ID" value="KRC58870"/>
        <property type="gene ID" value="ASE19_22660"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="23"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="163"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC58870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="242" mass="25592" checksum="9B0D32546864D5FE" modified="2016-01-20" version="1">MDALLTQERHLGPPTGTACAPIRVYVISPVRIYRDGLVQVLGRRSEFTVSGAADTFEAALPVVRRLEVDVALYDLRCPSGLAGLRRLAEAPQVSIVGLGVEETVESVLACAEAGIAGYVTDAASLDELAARVSDAARGELNCPPHIAASLLRRLAAHGSRQDTPHAGLGLTSRELEVAALLQQGLSNRQIAHRLTIQLATVKNHVHSILRKLETPTRSDAAAVLRSCSPGPTSLAPAARWPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQD3</accession>
    <name>A0A0Q8VQD3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ribosome-binding ATPase YchF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ychF</name>
        <name evidence="8" type="ORF">ASE19_06300</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. YchF/OLA1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894456.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55047">
        <property type="protein sequence ID" value="KRC55047"/>
        <property type="gene ID" value="ASE19_06300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="603226at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043023">
        <property type="term" value="F:ribosomal large subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04867">
        <property type="entry name" value="TGS_YchF_OLA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01900">
        <property type="entry name" value="YchF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00944">
        <property type="entry name" value="YchF_OLA1_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004396">
        <property type="entry name" value="ATPase_YchF/OLA1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031167">
        <property type="entry name" value="G_OBG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004095">
        <property type="entry name" value="TGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012676">
        <property type="entry name" value="TGS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023192">
        <property type="entry name" value="TGS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013029">
        <property type="entry name" value="YchF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041706">
        <property type="entry name" value="YchF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06071">
        <property type="entry name" value="YchF-GTPase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006641">
        <property type="entry name" value="CHP00092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81271">
        <property type="entry name" value="SSF81271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00092">
        <property type="entry name" value="TIGR00092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51710">
        <property type="entry name" value="G_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51880">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OBG-type G" evidence="6">
        <location>
            <begin position="3"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="domain" description="TGS" evidence="7">
        <location>
            <begin position="272"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="137"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="12"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC55047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="357" mass="38367" checksum="1BEC875BB40628BD" modified="2016-01-20" version="1">MALTIGIVGLPNAGKSTLFNALTKNDVLAANYPFATIEPNVGVVGVPDPRLGKLAEVFGSERQLPATVEFVDIAGIVRGASQGEGLGNKFLAHIRESAAICQVTRVFRDEDVTHVDGEVNPGNDISTIQTELILADLETVEKAVVRLEKEARKNKELAANLEAAKEAKEALESGTPIIATSIDRLLLRELSLLTAKPFIYVFNCDADELQDDALKARMSELVAPAEAIFLDAKFESELIELDDEEAAEFLAEAGVTEPGLEVLARVGFDTLGLQTYLTAGPKESRAWTIPKGATAPEAAGVIHTDFQKGFIKAEVVSFDDLMDAGSMAKAKEAGKVRMEGKDYVMADGDVVEFRFNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQG6</accession>
    <name>A0A0Q8VQG6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA mismatch repair protein MutT</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01120</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896685.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59656">
        <property type="protein sequence ID" value="KRC59656"/>
        <property type="gene ID" value="ASE19_01120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1846332at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="1">
        <location>
            <begin position="14"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="17886" checksum="12F59D8776F5BAD9" modified="2016-01-20" version="1">MTVTDPATGRTRFVVVPASYVFLLREAADGGPGTEVLLQLRQGTGYMDGHWAAAAAGHVERGETAPQAARREALEEVAVADLDLTFATAMQRTAHDLPIDERIDFFFTARSWTGDPRIVEPAKCADLRWFRLDALPDPVVPHERFVLTGLLHGDLAPLTQFGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQH3</accession>
    <name>A0A0Q8VQH3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02070</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892658.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56641">
        <property type="protein sequence ID" value="KRC56641"/>
        <property type="gene ID" value="ASE19_02070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1958442at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005561">
        <property type="entry name" value="ANTAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008327">
        <property type="entry name" value="Sig_transdc_resp-reg_antiterm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03861">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036382">
        <property type="entry name" value="RR_antiterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01012">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50921">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="14"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="ANTAR" evidence="4">
        <location>
            <begin position="134"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="127"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="205" mass="22432" checksum="5CF5E6BFB411C5EE" modified="2016-01-20" version="1">MTETAAAPQPSRRTVVIAEDETLIRMDLAEMLVEEGYDVVGQAGDGQKAIELAEELRPDLVILDVKMPVLDGIAAAEAIAGQRIAPVVMLTAFSQRELVERAREAGAMSYLVKPFSQSDLVPAIEMAVSRFAEIRQLENEVADLTERLETRKAVDRAKGILQEQLSLTEPEAFRWIQKTAMDLRMSMREVADGVVTHGVPGASNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQN9</accession>
    <name>A0A0Q8VQN9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cold-shock protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00745</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896891.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59813">
        <property type="protein sequence ID" value="KRC59813"/>
        <property type="gene ID" value="ASE19_00745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2034748at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04458">
        <property type="entry name" value="CSP_CDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002059">
        <property type="entry name" value="CSP_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00313">
        <property type="entry name" value="CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00050">
        <property type="entry name" value="COLDSHOCK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51857">
        <property type="entry name" value="CSD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CSD" evidence="1">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="131" mass="14524" checksum="1BBE4020E1C5E6B0" modified="2016-01-20" version="1">MPTGKVKWYDAEKGFGFLSQTDGPDVYVRSDALPEGVTTLKAGTRVEFGIAQGRRGDQALQVKLVDAPASVSRNQKEARRRKPEEMVPIVEDLIRLLDGVGEAYRHGRHPDRRTSEPVAKLLRALADELEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQT1</accession>
    <name>A0A0Q8VQT1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00640</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896766.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59574">
        <property type="protein sequence ID" value="KRC59574"/>
        <property type="gene ID" value="ASE19_00640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2085999at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360276" evidence="1">
        <location>
            <begin position="46"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="310" mass="33690" checksum="CC061EE18C8C7503" modified="2016-01-20" version="1">MIYSPFRYHSGAALSEGLEMLGRIPVLALIAALAATLVGVVPAQATPPDVTAITSSKATIYPRIGTTKRPASTTITVVSNTDDVTSLEVRNTATDTTVQTFDLASSDTVVWNGRDTGGNLVAAGSYTLIAFNGTDAATVTGSVNVSLQRLVRKTYTVQALPTKAYWKYVGKCSTLRKPSRRGWAGSYGYYANTKCRTQTWNASSVITVHAVRVPAAERYVDARIDTYGGAAKGQAGSRGGIEYWDNPKETWTAFRFAGSKVAWHNGYTRGATPLVDKDRYISWRYFTAYKSQYDVAKFRVVVHYDVLSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQU6</accession>
    <name>A0A0Q8VQU6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02630</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892754.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56736">
        <property type="protein sequence ID" value="KRC56736"/>
        <property type="gene ID" value="ASE19_02630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1980141at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="79"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="105"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="138" mass="15233" checksum="41480EDCF15ED60A" modified="2016-01-20" version="1">MQREQPDEDAAWRAIVDNYGDPVLEPDAGLDATPEPEPEPELPEHLRDEEPDELRYAVDDSFVPPAPPPLPRPTPDRMLAWLGVFGSPAVLLFFVVTGIGMPQLLGWALVGSFLVGFGYLVMKMPSEPRDPWDDGAVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRM5</accession>
    <name>A0A0Q8VRM5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01700</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896580.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59759">
        <property type="protein sequence ID" value="KRC59759"/>
        <property type="gene ID" value="ASE19_01700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="40"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="440" mass="45687" checksum="C1F875CCFC66810C" modified="2016-01-20" version="1">MLSKVTKVKLGVFIAITVVALLVTALYYVRLPQQVGIGRYDLEVELAGAGGIYPQAMVTYRGVEVGKVTDVELAKGGGVVARLQIDNGTELPKDSVVEVRSSSVIGEQYVNFVPAANASDGATYADGDTVPVAATVIPTTTDKLLTSVDGLLRSIPEDDLDTVVDELGLALQGAGDELGTFIDASQVFQSEAQRNLPQTIKLIEDSKPVLGTQADLDSSIRSYADSLDSFTTELAASNGDLKALLEGTGPAMETISEFAVDITGVAPGVISDLADLGEVLKVYKDGIEHVLIVTPAVLAAVTSSIPVNQRGPDRSQANLWFKLSFDPPTCTQGFENANKMRNPADLSARAPSTTSWCKVSADSVLAPRGARNHPCPNGGTGATAAACGLDFGGRRTNADAAGSTDATSGSVDLGLDSFLLSGATPSADGWQELLTGLVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRU4</accession>
    <name>A0A0Q8VRU4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_00710</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) family. Azg-like subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59807">
        <property type="protein sequence ID" value="KRC59807"/>
        <property type="gene ID" value="ASE19_00710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="558559at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015205">
        <property type="term" value="F:nucleobase transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904823">
        <property type="term" value="P:purine nucleobase transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045018">
        <property type="entry name" value="Azg-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006043">
        <property type="entry name" value="NCS2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43337">
        <property type="entry name" value="PTHR43337"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00860">
        <property type="entry name" value="Xan_ur_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="25"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="65"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="91"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="116"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="147"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="191"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="218"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="279"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="362"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="415"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="457"/>
            <end position="479"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="480" mass="50106" checksum="4BB1160DB6D1001B" modified="2016-01-20" version="1">MAPGSNPIDRWFRISERGSSLGQEVRGGVVTFFTMAYIVVLNPLILGYAVDADGQFLGGGDKPNLAAIAAGTALVAGVLTILMGVVANYPLALATGLGLNAFLAFSVASQMTWADAMGLVVIEGVLILVLVLTGFRTAVFRAVPAQLKVAISVGIGLFIALIGFVDAGVVKRIPDAALTTVPVQLGADGNLSGWPVLVFIVGLLLMLALWVRKVRGAILISIVVMTIVAVVVEAIGDLGRASEKAGGWSLTVPAWPDRFHAPDFGTLGEFNLLGSWDRVGVVAVLLLVFSLLLADFFDTMGTMTAIGAEANLLDEEGMPPNAERILVVDSIAAIAGGAAGVSSNTSYIESASGVGEGARTGLASVVTGLLFLVTIFLSPLVAMIPSEAAVPALVLVGFLMMQQITGISWDDPEIAIPAFLTIVLMPFTYSITVGIGAGFVTYAVLKVVRGKARELHPLLWVVAGLFVVYFAIDPITRWLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXY4</accession>
    <name>A0A0Q8VXY4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00140</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896851.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59489">
        <property type="protein sequence ID" value="KRC59489"/>
        <property type="gene ID" value="ASE19_00140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="359173at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="43755" checksum="0571CE8023D9FCC3" modified="2016-01-20" version="1">MSDPTSPHGLHGEYYGLGPLDEFPIHQLPRPVAWAGSSDRNFYDRCYLNAHDRTGDLFLITGLGFYPNLGTKDAFVLLSREVEGRREQTAVHLSDAADPRGADRMAQQVGNYRIEVTEPMRRLRIVMEETEGVALDLRWEGSFEVVQELPHVMRQGSGTTLDAQRFAQVGTWEGTLHVDGTDIAVTPDRWVGSRDRSWGIRPVGEAAPAGKPADPAFEGMWWLYVPMRFDEFCVVLIIQETPDGFRTLNDCTRVWKDGRVEQLGWPRVEVRYTSDTRVPTGATITCTTPQGTELVLEVESLLPVPIHVGGGYGGDSDWTHGMWKGPAFTERLTYDLADPAVAGRVMFGVIDHVGRATVHGPGAGVPDGAEGWGLFEHGSLGRHDPSGFADWFTLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMK0</accession>
    <name>A0A0Q8UMK0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ribonuclease PH</fullName>
            <shortName evidence="4">RNase PH</shortName>
            <ecNumber evidence="4">2.7.7.56</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">tRNA nucleotidyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4 7" type="primary">rph</name>
        <name evidence="7" type="ORF">ASE19_20505</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>phosphate + tRNA(n+1) = a ribonucleoside 5'-diphosphate + tRNA(n)</text>
            <dbReference type="Rhea" id="RHEA:10628"/>
            <dbReference type="Rhea" id="RHEA-COMP:17343"/>
            <dbReference type="Rhea" id="RHEA-COMP:17344"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:173114"/>
            <dbReference type="EC" id="2.7.7.56"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homohexameric ring arranged as a trimer of dimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the RNase PH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.56" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896006.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46235">
        <property type="protein sequence ID" value="KRC46235"/>
        <property type="gene ID" value="ASE19_20505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1824064at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000175">
        <property type="term" value="F:3'-5'-exoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009022">
        <property type="term" value="F:tRNA nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016075">
        <property type="term" value="P:rRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11362">
        <property type="entry name" value="RNase_PH_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00564">
        <property type="entry name" value="RNase_PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001247">
        <property type="entry name" value="ExoRNase_PH_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015847">
        <property type="entry name" value="ExoRNase_PH_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036345">
        <property type="entry name" value="ExoRNase_PH_dom2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027408">
        <property type="entry name" value="PNPase/RNase_PH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002381">
        <property type="entry name" value="RNase_PH_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018336">
        <property type="entry name" value="RNase_PH_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01138">
        <property type="entry name" value="RNase_PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03725">
        <property type="entry name" value="RNase_PH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55666">
        <property type="entry name" value="SSF55666"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01966">
        <property type="entry name" value="RNasePH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01277">
        <property type="entry name" value="RIBONUCLEASE_PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 4" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="4 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 4" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="2 4" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="RNase_PH" evidence="5">
        <location>
            <begin position="12"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="RNase_PH_C" evidence="6">
        <location>
            <begin position="155"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphate (substrate) binding" evidence="4">
        <location>
            <begin position="126"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <note>substrate</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00564"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="237" mass="24889" checksum="946AB9F46401AB8A" modified="2016-01-20" version="1">MSTREDGRADDELRPIKITRHWLDHPAGAVLVEFGKTRVLCAASASEGVPRWRKGSGLGWVTAEYAMLPASTNTRSDRESVKGRIGGRTHEISRLIGRSLRAIIDDKALGENTVQIDCDVLQADGGTRTAAITGAYVALADACAKLGVPGALTGSVAAVSVGIIDGVPRLDLPYVEDVRAETDMNVVMTGAGKYVEVQGTAEGAAFDRAELDALLALAEKGCADLTRMQQDALGLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMV6</accession>
    <name>A0A0Q8UMV6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">ATP-dependent Clp protease proteolytic subunit</fullName>
            <ecNumber evidence="5">3.4.21.92</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Endopeptidase Clp</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">clpP</name>
        <name evidence="8" type="ORF">ASE19_21050</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Fourteen ClpP subunits assemble into 2 heptameric rings which stack back to back to give a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 7">Belongs to the peptidase S14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.92" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896099.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46328">
        <property type="protein sequence ID" value="KRC46328"/>
        <property type="gene ID" value="ASE19_21050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1728970at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07017">
        <property type="entry name" value="S14_ClpP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00444">
        <property type="entry name" value="ClpP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001907">
        <property type="entry name" value="ClpP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023562">
        <property type="entry name" value="ClpP/TepA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033135">
        <property type="entry name" value="ClpP_His_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10381">
        <property type="entry name" value="PTHR10381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00574">
        <property type="entry name" value="CLP_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00127">
        <property type="entry name" value="CLPPROTEASEP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00382">
        <property type="entry name" value="CLP_PROTEASE_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5 8" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0720">Serine protease</keyword>
    <feature type="active site" description="Nucleophile" evidence="5">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 6">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="201" mass="21729" checksum="047FE0CC733CA794" modified="2016-01-20" version="1">MNGGAGISFLDDNIYSRLLRERIVFLGSEVRDQNANAICAQLLLLSAEDPEADIFLHINSPGGSVDAGMAIYDTMNYIPNDVATVGMGLAASMGQFLLCAGAKGKRYALPHARIMMHQPSSGMGGSASDIKIQAQQSLHIKKVLLDLIAEHTGQTVEQVTEDADRDRWFTAQEALEYGLVDKVVKSAKEAVDEGRPAHKKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMW0</accession>
    <name>A0A0Q8UMW0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20945</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896080.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46309">
        <property type="protein sequence ID" value="KRC46309"/>
        <property type="gene ID" value="ASE19_20945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1594634at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009351">
        <property type="entry name" value="YcaQ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06224">
        <property type="entry name" value="HTH_42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="372" mass="40824" checksum="D302674436BE7278" modified="2016-01-20" version="1">MTVLDVEQARRIAVRAQLLDAPATRAGRSVAEVVDELTLLQVDPTAAVAPNVDLVLWSRLGGDYEHSDLTFALETERSLVEHSSYVRPVDDIGLVLATMRHELHPRVLEWVEANARFRTDVLAQLAAEGPRTAAEVPDTCQVPWESSGWNHDKNVNRLLEMLTLLGDVAISSRHGKLRVYDLAERVYPADLTVPSYDDAKAALDRRRLASLGIARGSARGNGGEQIGAGSGGVPVTVAGVAGEWRADPDALAAADDDFEGRCAFLSPFDRLVYDRDRALDLFDFEYVLEMYKPAAKRRWGYFALPVLHDDRLVGKLDAKADRRAGVLRVHAVHEDVPWSPATGDAVDAEIDALASWLGLAVVRDEGIRARPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMY2</accession>
    <name>A0A0Q8UMY2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Diadenosine tetraphosphate hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21255</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896134.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46363">
        <property type="protein sequence ID" value="KRC46363"/>
        <property type="gene ID" value="ASE19_21255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1598286at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.428.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036265">
        <property type="entry name" value="HIT-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54197">
        <property type="entry name" value="SSF54197"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="168" mass="18399" checksum="2C4C4E8D1F557311" modified="2016-01-20" version="1">MTDQGMTDFRVDRVGSALAGTNPTVLRRLTAGFAVIGDVQHLPGYCVLITDDPEADQLTDLAVEDQLAFLADMALLGRAVAAVCARRDPAFRRINLEIQGNTDAFLHAHVTPRYQWEPEDLVRWPAALHHWEQRVDVARHGLGPQHDELRAELVAAIDAELAATTASG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMY9</accession>
    <name>A0A0Q8UMY9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidoglycan glycosyltransferase</fullName>
            <ecNumber evidence="2">2.4.1.129</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_21260</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n)-di-trans,octa-cis-undecaprenyl diphosphate + beta-D-GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate = [GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n+1)-di-trans-octa-cis-undecaprenyl diphosphate + di-trans,octa-cis-undecaprenyl diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23708"/>
            <dbReference type="Rhea" id="RHEA-COMP:9602"/>
            <dbReference type="Rhea" id="RHEA-COMP:9603"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60033"/>
            <dbReference type="ChEBI" id="CHEBI:78435"/>
            <dbReference type="EC" id="2.4.1.129"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.129" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46364">
        <property type="protein sequence ID" value="KRC46364"/>
        <property type="gene ID" value="ASE19_21260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018365">
        <property type="entry name" value="Cell_cycle_FtsW-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001182">
        <property type="entry name" value="FtsW/RodA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011923">
        <property type="entry name" value="RodA/MrdB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30474">
        <property type="entry name" value="PTHR30474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01098">
        <property type="entry name" value="FTSW_RODA_SPOVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02210">
        <property type="entry name" value="rodA_shape"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00428">
        <property type="entry name" value="FTSW_RODA_SPOVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="34"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="100"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="163"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="188"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="211"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="301"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="330"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="368"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="410" mass="43418" checksum="001D296ECCD92D65" modified="2016-01-20" version="1">MSNRIQSSRATARTRRTTASRRVAFPMWGDVDRILLAAVLALSLIGCVLIWSATLERDDLTGGDSRAFLVKQLINVVIGLGLMATVVMTDHRWVRILAPIAYLVAIAGLVLVLAMGSTINGSRSWLIIGGMSFQPSELAKLAVVVGMALVVAERSEGRWRDRVGTTDVLLMLVVAGVPAVLILAQPDLGTMLVLTATVFGVIAASGADRRWLGLLGAGGIGIAVFAVVSGFLKQYQVDRFLAFTNPDLDPKGAGYNVEQARIAVGNGGLFGQGLFDGSQTQSGFVPEQHTDFVFTVAGEELGLVGAAVIVALLGIVLWRSLRIATRTDDVFGRIAAAGIACWFGFQAFQNIGMCLGIMPVTGVPLPFVSYGGSSMFAGMLAVGLLQNIHLRTLTAPASRLAPQKRVLVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN41</accession>
    <name>A0A0Q8UN41_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Pilus assembly protein TadB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_21495</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896178.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46408">
        <property type="protein sequence ID" value="KRC46408"/>
        <property type="gene ID" value="ASE19_21495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1559784at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018076">
        <property type="entry name" value="T2SS_GspF_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00482">
        <property type="entry name" value="T2SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="106"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="131"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="278"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSF" evidence="7">
        <location>
            <begin position="173"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="308" mass="32521" checksum="357E04D5A8EC9C45" modified="2016-01-20" version="1">MSPAMWGGLIGLGTTAGVALVVARVAAIRRPRLEARVLPYVRDLTPARRAPAAVVPGNVVAAVFGPALRRAADAVERVLGGTPSVRRRLGRAGLDLTVHEFRVQQVLWGLAGFGIAAAYGLLRTWSRPGNPLPLLVVCGVAFVFGVLLRDNRLSAQVRAREAAIVAEFPTIAELLALSVAAGEAPVAALGRVVRRSGGELSRDLSEVLARIRTGDPVADAFDHLAATTGVPIVARFAHGIAVAVERGTPLADVLHAQAADVREAGRRALIEQASRKEILMLVPVVFLVLPVTVMFAFWPGFIGLSLSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN79</accession>
    <name>A0A0Q8UN79_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_20530</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896010.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46239">
        <property type="protein sequence ID" value="KRC46239"/>
        <property type="gene ID" value="ASE19_20530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="6"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="152"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="221" mass="23604" checksum="B5E62D32CDEFB4EE" modified="2016-01-20" version="1">MSDVTEVLIVDDDPLVRSALALMLGGQADIAVVGEAPDGRAGVRMARELSPDVVLMDIRMPVLDGLAATRLLHGEPRPPRVIVLTTFDADDYVVGALAAGADGFLLKDTPPGEIVAAIRKVADGDPMLSPSVTRTLIERVRTDSGDGRAADAQRRLERLTERELEVAGAVGRGLSNAEIARELHLSVPTVKGHVSRLFEKLQTTNRVQIALCIRDAGHPVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNM7</accession>
    <name>A0A0Q8UNM7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22340</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896317.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46549">
        <property type="protein sequence ID" value="KRC46549"/>
        <property type="gene ID" value="ASE19_22340"/>
    </dbReference>
    <dbReference type="OrthoDB" id="859949at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="220"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="636" mass="67707" checksum="B0CBA118C40AAF18" modified="2016-01-20" version="1">MTEPPSFVSSSDLAAGFDDFYKDARDRLLLQTFALTGDLTAARSAVREAFVVAWHHWRKTSRLDDPEMSVRPAAWRRALRRSSTRPWHRKKDLDPASRAVLEALAALPLAQRKALLLTQLAAVSMDEMAHEVGLPLESAERELQLGAAQLAMQLEIPTSAIPLSLSSLSTVTRTVTWPRVTIIRRAGSARRRAHTIIGATAAVTALVAGGAVATDATGVRPSLDRAPLPSATAPASSGPAVNALPATSLLELDGVRAVLGGRGWTQGATSDNSAGNGRVLPCQPDRYADPKGTAAWERSFRAGAKTPRTVVQFAEASLTDRHAARTYRRTLAWFTGCPTPDDDASAVPRIQLVSTADVRGVGDQASLLVLRSRADRTVYVVGVARTGLFTTTTSLASRIPAGKADRKAAARLLGTAVGRLCQLTDGGACATGAPKVTERSAYPAGKVPWMLSEVDLPPLNRDQGPWVGTPVAALKEDRIDSGAIGCETAHLFGTFRDQRIQANQFRTFVLSAADLPPEVGLTQTVGSLPAGGARTFVKRFRERMAQCPDLDASAGTEVDELAATTTTSTALSAWHLSTALPGDRTVEYDVAVLRRGTSLAVVVYVAAPRARIDDEDFVALARRSLDRLGRMAAHAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNQ7</accession>
    <name>A0A0Q8UNQ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metal-dependent hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20535</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896383.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46614">
        <property type="protein sequence ID" value="KRC46614"/>
        <property type="gene ID" value="ASE19_20535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1712770at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12706">
        <property type="entry name" value="Lactamase_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="52"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="251" mass="27369" checksum="876B5E27B42E675E" modified="2016-01-20" version="1">MRVTVVGCSGSYPGPDSPASCYLVQASDALRTWSLVLDMGNGALGVLQRYVDPLQVDAVFISHLHADHCVDMTSYYVLRKYHPTGTQPRIPVWGPKGTAKRLAKAYDLPRKPGMREEFSFRVYSKPITIGPFTIEPFEVDHPVPAYGLRLSAFGKVIGYSGDTGPTDALDAIAADADLFLCEASFRSCDDNPPNLHLTGEEAGEIATRARAKRLIVTHVPPWHDAQTMLAEANKTYDGPTELAAMGAVYEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNW6</accession>
    <name>A0A0Q8UNW6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 3">Adenosine deaminase</fullName>
            <ecNumber evidence="1 3">3.5.4.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2 3">Adenosine aminohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">add</name>
        <name evidence="5" type="ORF">ASE19_22105</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the hydrolytic deamination of adenosine and 2-deoxyadenosine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>2'-deoxyadenosine + H(+) + H2O = 2'-deoxyinosine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:28190"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17256"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:28997"/>
            <dbReference type="EC" id="3.5.4.4"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>adenosine + H(+) + H2O = inosine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:24408"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:17596"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.4" evidence="1 3"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896280.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46511">
        <property type="protein sequence ID" value="KRC46511"/>
        <property type="gene ID" value="ASE19_22105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="554648at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046936">
        <property type="term" value="F:2'-deoxyadenosine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004000">
        <property type="term" value="F:adenosine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009168">
        <property type="term" value="P:purine ribonucleoside monophosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00540">
        <property type="entry name" value="A_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028893">
        <property type="entry name" value="A_deaminase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001365">
        <property type="entry name" value="A_deaminase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006330">
        <property type="entry name" value="Ado/ade_deaminase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11409">
        <property type="entry name" value="PTHR11409"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00962">
        <property type="entry name" value="A_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01430">
        <property type="entry name" value="aden_deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="A_deaminase" evidence="4">
        <location>
            <begin position="12"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="3">
        <location>
            <position position="205"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="19"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="202"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="294"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="3">
        <location>
            <position position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00031852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="356" mass="39274" checksum="B6D9C5C36A603F7F" modified="2016-01-20" version="1">MELSAADIQAAPKVLLHDHLDGGLRPATIVDLAAEVGHTLPATDPAELATWFAEAADSGTLERYLETFAHTVGVMQTAAALTRVARECVEDLAADGVVYAEIRYAPELHVERGLELTDVVAAVQQGFEEGMTATGGRIVVRHLLTAMRQAARAMEIAELAIQWRDRGVVGFDIAGPEAGYPPTRFIDAFEYLKRENSHFTIHAGEGFGLPSIWEAVQWCGADRLGHGVRIVDDIAIDEDGTPRLGRLASYVRDKRIPLEMCPSSNVQTGAAPSLAEHPIKLLASLRFRVTVNTDNRLMSRTSLSKEFGLLHETFGYGWSEMEWLTVNAMKSAFIPYDERYRLITQTIKPWYAERLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8URG6</accession>
    <name>A0A0Q8URG6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_20965</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896084.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46313">
        <property type="protein sequence ID" value="KRC46313"/>
        <property type="gene ID" value="ASE19_20965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="8"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="128"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="238"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="399" mass="42798" checksum="EF5C37E639440561" modified="2016-01-20" version="1">MTQFDLSREHEEFRRTVRDFAESTIRPHVAEWDKSHYFPVDVVQKMGDLGLFGLTAPEEYGGAGLEAADGPFTSLCLAIEELGRVDQSMGVTLEAGVGLGINPIQTFGSDEQKAQWLPDLVAGRRLAGFGLTEPGAGSDAGATKTRAELDNGEWVVNGGKQFITNSGSSITSLVTVTARTGISAEGKPEISAILVPAGTPGFVAEPAYDKLGWHISDTHPLTFTDCRVPEAHLLGERGRGYAQFLAILDDGRVAIAALAVGLIQACVDLCVEYSLDRQTMGGPIGRKQGVAFQIADLEVMLHASRMLTYRAAAMKDAMVDGRGPSMKEFKQAASVAKLYASESAVTATRIATQVFGGYGFMEEYPVARFYRDAKILEIGEGTSEVQRMLIARGLGLPVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU61</accession>
    <name>A0A0Q8UU61_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17330</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893108.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48702">
        <property type="protein sequence ID" value="KRC48702"/>
        <property type="gene ID" value="ASE19_17330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1912696at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021412">
        <property type="entry name" value="DUF3052"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11253">
        <property type="entry name" value="DUF3052"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="125" mass="13015" checksum="069A2B87881D4B6C" modified="2016-01-20" version="1">MGLKPGLVVQELGWDNDTDDDLRVAIEDTIDGDMVDGDYGNVVDAVLLWWRDDDGDLVDGLVDSLTDLVGGGVIWLLTPKIGRPGAVDAADIAEAAPIAGLAQTSAATVSKDWAATRLVAPKSVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUD7</accession>
    <name>A0A0Q8UUD7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phenylacetate-CoA oxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21660</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896205.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46435">
        <property type="protein sequence ID" value="KRC46435"/>
        <property type="gene ID" value="ASE19_21660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="623539at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097266">
        <property type="term" value="F:phenylacetyl-CoA 1,2-epoxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010124">
        <property type="term" value="P:phenylacetate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011881">
        <property type="entry name" value="PaaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007814">
        <property type="entry name" value="PaaA_PaaC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05138">
        <property type="entry name" value="PaaA_PaaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02156">
        <property type="entry name" value="PA_CoA_Oxy1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="322" mass="36230" checksum="1E4C1021F2178FFA" modified="2016-01-20" version="1">MSSAVAEPEVPGLPELEGHFTATIEHADRIEPRDWMPDGYRKTLVRQIAQHAHSEIIGMQPEGNWIGRAPSLRRKAILLAKVQDEAGHGLYLYSATETLGVSRDELTEMLISGKQKYSSIFNYPTLSYTDVGTIGWLVDGAAICNQVPLCRTSFGPYGRAMIRICKEESFHQRQGYELLMTMMRGTDEQRAMVQESVNRFWWPALMMFGPPDEDSSNTEQSMAWGIKTHTNDELRQRFVDMSVPQAKALGVTLPDPDLVWNEERGQHDFGQPDWDEFWAVVKGNGPCNAQRIAHRKQAWDEGAWVREAATAFATAAGEEKSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUK4</accession>
    <name>A0A0Q8UUK4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17660</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LppX/LprAFG lipoprotein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893158.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48756">
        <property type="protein sequence ID" value="KRC48756"/>
        <property type="gene ID" value="ASE19_17660"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd16334">
        <property type="entry name" value="LppX-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029046">
        <property type="entry name" value="LolA/LolB/LppX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009830">
        <property type="entry name" value="LppX/LprAFG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07161">
        <property type="entry name" value="LppX_LprAFG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89392">
        <property type="entry name" value="SSF89392"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359438" evidence="2">
        <location>
            <begin position="35"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="239" mass="24496" checksum="BE8B09D86B7AB330" modified="2016-01-20" version="1">MTTSTRVAAGLLTGLFAVSGLTACSGDDDGGSDAASWTDAGAKAKELLDGTSGIEVSISTADDPGVDYLSAASGTIVADPPAFEGSVSGSVSGLPVTGVPVISVGGTLWINHALLGGWSDRFQPEDLCAPDPATLLSPDSGVSNVLTSSDDVKAGKSERGGKDNKEVFHTYSGTATGDAIREILPCAEGDAFDATYRIDDEGYLRTARLTGVFFPDADEVTYTIDVTKYDVTKDISAPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UW05</accession>
    <name>A0A0Q8UW05_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein often found in actinomycetes clustered with signal peptidase and/or RNaseHII</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20025</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_036546742.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46157">
        <property type="protein sequence ID" value="KRC46157"/>
        <property type="gene ID" value="ASE19_20025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1837954at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019592">
        <property type="entry name" value="DUF2469"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10611">
        <property type="entry name" value="DUF2469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="102" mass="12047" checksum="6FE51A1872BA19C3" modified="2016-01-20" version="1">MSAEDLEKYETEQELNLYREYRDVVGIFKYVVETDRRFYLCNSVDVKARSEGTDVFFEVTIADAWVWDMYRPARFAKNVKVLTFKDVNVEELATSDLELPKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWC3</accession>
    <name>A0A0Q8UWC3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Ammonium transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_20050</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ammonia transporter channel (TC 1.A.11.2) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895936.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46161">
        <property type="protein sequence ID" value="KRC46161"/>
        <property type="gene ID" value="ASE19_20050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="562287at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001905">
        <property type="entry name" value="Ammonium_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018047">
        <property type="entry name" value="Ammonium_transpt_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43029">
        <property type="entry name" value="PTHR43029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00836">
        <property type="entry name" value="amt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01219">
        <property type="entry name" value="AMMONIUM_TRANSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0924">Ammonia transport</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="41"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="98"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="126"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="174"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="208"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="241"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="269"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="292"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="325"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="364"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="domain" description="Ammonium_transp" evidence="9">
        <location>
            <begin position="7"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="418" mass="43609" checksum="7533AAC212AA4F78" modified="2016-01-20" version="1">MSVELSWQLICAALVLFMTPGLAFFYGGLVKQKSVVSMMMLSFGSIAVVTLLYLLIGGTGIAGNGTDGGSKLFGNPFQDVGMSDLMTGVGGGDAANAFGSHAFLVAFCIITVALVSGAVADRARFWPWMLFAALFTTFVVFPTFRWIWGVNGDGEFYGWLANDVWGLGQGALDWAGGTVIHQSAGASALALALVLGKRKVGFSKEESVAHNVPLVLIGAAILWFGWYGFNTGVFGADEGQTSLIFFNTLVAPAAALLGWIAVESVREGKATAVGAASGIVTGLVAITPACAFVTPIWAMVLGLVSGAICAFAIDLKFKLGFDDSLDVVGIHLVAGFIGCIWVGIFGAEALTGGSLVFGGEVKLFLAQLLSSLTVIAFSFVVSFVFATVIEKTIGFRVKEEDEVAGIDLALHGEGYALD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWI1</accession>
    <name>A0A0Q8UWI1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20810</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46285">
        <property type="protein sequence ID" value="KRC46285"/>
        <property type="gene ID" value="ASE19_20810"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="27774" checksum="34A96D6CB990D590" modified="2016-01-20" version="1">MLLVEVELSHQHGVAHRADREAGPTRTDREVHVVVEDEVRRVGQPDPLHDLAPDQEALEGDVLDLDGRRHVLAPGVRRVDARRLGPDGQRVAQVEAERGLLDQSTGAVLADGDQAGALDLEQAGEAVGRRDDVVVHQPHGVVAAVVGGLQPEVEAPGAAEVLGRVDRDQAGQHAALQHRAGVVGAGIVDHEHRVRRAVEPGQAREHPLQQVGAVERDDDDRDLLGAHLKNLSWPVKSPRRPAAAARALSGIRAGCGLVNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWJ8</accession>
    <name>A0A0Q8UWJ8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">N5-carboxyaminoimidazole ribonucleotide mutase</fullName>
            <shortName evidence="3 4">N5-CAIR mutase</shortName>
            <ecNumber evidence="3 4">5.4.99.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">5-(carboxyamino)imidazole ribonucleotide mutase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">purE</name>
        <name evidence="7" type="ORF">ASE19_20895</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 4">Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole + H(+) = 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate</text>
            <dbReference type="Rhea" id="RHEA:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58730"/>
            <dbReference type="ChEBI" id="CHEBI:77657"/>
            <dbReference type="EC" id="5.4.99.18"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate from 5-amino-1-(5-phospho-D-ribosyl)imidazole (N5-CAIR route): step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the AIR carboxylase family. Class I subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.18" evidence="3 4"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896072.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46301">
        <property type="protein sequence ID" value="KRC46301"/>
        <property type="gene ID" value="ASE19_20895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1701464at2"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00943"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034023">
        <property type="term" value="F:5-(carboxyamino)imidazole ribonucleotide mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01929">
        <property type="entry name" value="PurE_classI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033747">
        <property type="entry name" value="PurE_ClassI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000031">
        <property type="entry name" value="PurE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024694">
        <property type="entry name" value="PurE_prokaryotes"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00731">
        <property type="entry name" value="AIRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001338">
        <property type="entry name" value="AIR_carboxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01001">
        <property type="entry name" value="AIRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01162">
        <property type="entry name" value="purE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="1 3 4" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AIRC" evidence="6">
        <location>
            <begin position="3"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR001338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001338-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="16617" checksum="B6CC019D1F7CAB57" modified="2016-01-20" version="1">MSARVGIVMGSDSDWPVMQLAAEALQEFGIEHEADVVSAHRMPEEMIAYGKEAAGRGLSVIIAGAGGAAHLPGMLAAVTPLPVIGVPVPLKYLDGMDSLLSIVQMPAGVPVATVAIGGARNAGLLAVRILAATDPALQQRMTDFQAELKLAAEAKGAVVRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXL5</accession>
    <name>A0A0Q8UXL5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_22575</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896358.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46589">
        <property type="protein sequence ID" value="KRC46589"/>
        <property type="gene ID" value="ASE19_22575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025828">
        <property type="entry name" value="Put_sensor_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13796">
        <property type="entry name" value="Sensor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="domain" description="Sensor" evidence="3">
        <location>
            <begin position="31"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="domain" description="HisKA_3" evidence="2">
        <location>
            <begin position="245"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="432" mass="45512" checksum="C307A64DBA402B95" modified="2016-01-20" version="1">MTETLVMTPTSPPAHVAGTPLVRRTLHDSAYALSAFPLALVAHVVVITLLALGAALSVLIGGVLVVVVAVLVARGFAGLERIRLRTVRSDAVPAPSYLRAGSGDRFWRRTLTPLRDPQSWLDVVWSLVGLLTGTAAFAIALTWWSAVLTGASYWLWERFIPRDGDDKSLADLVGLGESRAADVGLITGIGVVALLTLPLAVRLAALVHSSLASVLLTSRAELQGRVARVEESRESAHRAEAESLRRLERDIHDGPQQRLIRLGMDLGRARIQLGQDPDTAARTLDAAVAQTRAAVEELRALSRGIAPPLLVDRGLVAAVAEMADGQPIPVRVTADVPSGLPLPVETAAYFVVAEALTNVVKHSGAARADVTLVVVDGALQVTVDDDGRGGAAASPGHGLHGLQERLAGVDGRLLLASPEGGPTRLRAEVPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY05</accession>
    <name>A0A0Q8UY05_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PKS_ER domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893594.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50126">
        <property type="protein sequence ID" value="KRC50126"/>
        <property type="gene ID" value="ASE19_16065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1752728at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002364">
        <property type="entry name" value="Quin_OxRdtase/zeta-crystal_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01162">
        <property type="entry name" value="QOR_ZETA_CRYSTAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="10"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="327" mass="33460" checksum="4424ED3EAD4DE46D" modified="2016-01-20" version="1">MHAVIMNETGGPEVLTYGEIATPEPAPGEVRVRVAYAGVNPADWKNRQGMLAAFRPYVFPYVLGFDAAGVVDALGEGVTGFAVGDRVFTPTNHGQGAQGSYAEHVVANVDRVAPIPDAMDFRSAAALPVAALTAWQALQHNGGVQAGQQVLVHGGSGGLGGFAVQFAKAAGAQVAATCSTANVAYLAGLGADLVIDYLGDDVTATLKEWAPEGLDLVVNTAGASSLTHGLDLVRSGGALVSIPTLVDDGDIPAEVAAAAGRGVERVYSMMTDVDCAPALATIADLVVAGDVRLPEIREFALQDAATAHEAIQTGHTRGKIVLKVAEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY29</accession>
    <name>A0A0Q8UY29_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16245</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893626.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50158">
        <property type="protein sequence ID" value="KRC50158"/>
        <property type="gene ID" value="ASE19_16245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1648180at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359522" evidence="1">
        <location>
            <begin position="30"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="18825" checksum="3A5CA3F5575CADD6" modified="2016-01-20" version="1">MRNVSPSSALVVGFSALALTVGGATWATAQQGNPSENGRPGQERWLLVNANGEIEAQSGGFTVAAAYPTLANTSTTGDNSLRAAGNVYIDAGESLGDNGIVATIALQNQLDQNGDAITNGRAAGPDANPEFSGEISATVCGLAGVVACAPGGTNNDRHFVVSPRNSDGSVTQAGARKRFYIVVTSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY53</accession>
    <name>A0A0Q8UY53_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peroxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16390</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893652.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50184">
        <property type="protein sequence ID" value="KRC50184"/>
        <property type="gene ID" value="ASE19_16390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="40466at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09818">
        <property type="entry name" value="PIOX_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034815">
        <property type="entry name" value="A_dioxygenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019791">
        <property type="entry name" value="Haem_peroxidase_animal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010255">
        <property type="entry name" value="Haem_peroxidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037120">
        <property type="entry name" value="Haem_peroxidase_sf_animal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03098">
        <property type="entry name" value="An_peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48113">
        <property type="entry name" value="SSF48113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50292">
        <property type="entry name" value="PEROXIDASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="1" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="1" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="1" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="1" id="KW-0925">Oxylipin biosynthesis</keyword>
    <keyword evidence="3" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="29"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="29"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="602" mass="68237" checksum="4C95E3DD6F008B45" modified="2016-01-20" version="1">MVQWHQNPSLILQLKALSGERDDLRSKNLFEADDIRPAEDPKETPPEEAVRARTPDGTWNDLGCKHMGAKGTGFGRNAPIARTTPDLKRLLDPDPRMISERLMARDEFKPAGIINGLAAAWLQFENHNWFFHGDGVPDRTIDIPLRDGDEFPENPMRIRSTIPMHGGEIESGCPAPVFANQETHWWDGSQIYGSGRERQDEMRTFVDGKIKVGDDGRLLKSTIPGIDLTGMKENYWVGVGLLHTLFSREHNAVCDALKKAYPSLSDQRLFELGVLVVSALIAKIHTVEWTPCVLRHPALQIGMSANWYGALGETFRSRIGRVGDSEALSGIIGSSTDHHSAPFSLTEEFVSVYRMHPLIADDWDFYSLESGEFLEHRDFTDLQGRYTRDFMDRMEMGDMWYSFGLASAGAVCLKNYPNALRKLTRVDGQVTDLATLDIVRDRERGIPRYNDFREVLRMPRRRSFDDITPNKAWAKELAEIYKGDVDSVDLQIGMQAEKPPKGFGFSDTAFRIFILMASRRLKSDRFFTDDYRPEVYTQVGLDWVNETSMKDVILRHYPELDPVVGDVERVFAPWPQLGEAGPGRRNPVIRLADTVKSYMPLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYF0</accession>
    <name>A0A0Q8UYF0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 10">3-oxoacyl-[acyl-carrier-protein] synthase 2</fullName>
            <ecNumber evidence="3 10">2.3.1.179</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_17295</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Involved in the type II fatty acid elongation cycle. Catalyzes the elongation of a wide range of acyl-ACP by the addition of two carbons from malonyl-ACP to an acyl acceptor. Can efficiently catalyze the conversion of palmitoleoyl-ACP (cis-hexadec-9-enoyl-ACP) to cis-vaccenoyl-ACP (cis-octadec-11-enoyl-ACP), an essential step in the thermal regulation of fatty acid composition.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>(9Z)-hexadecenoyl-[ACP] + H(+) + malonyl-[ACP] = 3-oxo-(11Z)-octadecenoyl-[ACP] + CO2 + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:55040"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:10800"/>
            <dbReference type="Rhea" id="RHEA-COMP:14074"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="ChEBI" id="CHEBI:83989"/>
            <dbReference type="ChEBI" id="CHEBI:138538"/>
            <dbReference type="EC" id="2.3.1.179"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>a fatty acyl-[ACP] + H(+) + malonyl-[ACP] = a 3-oxoacyl-[ACP] + CO2 + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:22836"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9916"/>
            <dbReference type="Rhea" id="RHEA-COMP:14125"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="ChEBI" id="CHEBI:78776"/>
            <dbReference type="ChEBI" id="CHEBI:138651"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 10">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10 12">Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.179" evidence="3 10"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893103.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48697">
        <property type="protein sequence ID" value="KRC48697"/>
        <property type="gene ID" value="ASE19_17295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="606297at2"/>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00834">
        <property type="entry name" value="KAS_I_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017568">
        <property type="entry name" value="3-oxoacyl-ACP_synth-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018201">
        <property type="entry name" value="Ketoacyl_synth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014031">
        <property type="entry name" value="Ketoacyl_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020841">
        <property type="entry name" value="PKS_Beta-ketoAc_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02801">
        <property type="entry name" value="Ketoacyl-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000447">
        <property type="entry name" value="KAS_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00825">
        <property type="entry name" value="PKS_KS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00606">
        <property type="entry name" value="B_KETOACYL_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10 14" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8 10" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="5 10" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 12 14" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_KS" evidence="13">
        <location>
            <begin position="6"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR000447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000447-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC48697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="42108" checksum="F27C94E7E07DAE8B" modified="2016-01-20" version="1">MSRTRVVVTGLGTTSPLGGDVASTWEGLLAGRSGVRHLGDVAEGLPVKIGGVAAVDPTEVLDRVVARRLDRSSQLALVAALEAWADSGLDAVKDAGNLESERFGVAFASGIGGVQTLLSNHEILLEKGPRRVSPIAVPMLMANAPAATISLKLGARGPVNTPVSACASGNEAISLAADQIRLGRVDVAIAGGTEAAIHPLPIAAFANMMALSKNDGDPTTVSRPFDTARDGFVLGEGAGALVLESYEHAKARGARIYAEVLGTGITADAHDIAQPDPEGRGGTRALKLAVQDAGISAADVAHVNAHATSTPQGDVAESLMLHAVLGAQAGNLVVSATKSMTGHLLGGAGALEGVATVLAVHHRVAPPTINLDNQDPRVELDVATKVRDLPLGDIAAINNSFGFGGANVAVIFGSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYG7</accession>
    <name>A0A0Q8UYG7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Antibiotic transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_20150</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895953.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46178">
        <property type="protein sequence ID" value="KRC46178"/>
        <property type="gene ID" value="ASE19_20150"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010290">
        <property type="entry name" value="TM_effector"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05977">
        <property type="entry name" value="MFS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="149"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="177"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="228"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="262"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="313"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="353"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="380"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="16"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="426" mass="44897" checksum="3AAA0C6D889982B6" modified="2016-01-20" version="1">MSRIVEAVAPARLGPDFRRLMASTWVSNLGDGIALAAGPLLVASQTRSPALVSMAMLLVGLPWLLFGLFAGAVADRVDRKRMVMVANSLRIVVLGALIGSIVTDVVSIAVVLTAMFLLGTAEVFADTAYRTFLPMLVDKRDLGIANARLQAGFITLNQFAGAPIGAALFAVGMGVPFGAQVACGLLAVVLVSRIALPPGPVRGEVDTHVLRDIGDGLRWLMGHPPVRTLALVIVTFNITWAAAWSILVLYSLDVLHMGPVGYGLLTTASATGGLVGTFLYGWLERHVPLATLMRACLALEVLMHLGFAVTRVAWVAVLIMFGFGVYAFVWGTLSQAVRQRAVPTEYQGRVGSVYSVAIYGGVVAGSALGGVIAQHGGVTAPFWFAFVGSGITLVLVWRQLAHIAHLEEPDGESGDTRVRSSDAGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYR4</accession>
    <name>A0A0Q8UYR4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_17975</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893210.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48809">
        <property type="protein sequence ID" value="KRC48809"/>
        <property type="gene ID" value="ASE19_17975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1933465at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010488">
        <property type="entry name" value="Zeta_toxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06414">
        <property type="entry name" value="Zeta_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Zeta_toxin" evidence="3">
        <location>
            <begin position="54"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF06414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="193" mass="21062" checksum="B212530F404D4454" modified="2016-01-20" version="1">MSTPVLHLLAGPNGAGKSTLAERVLIPVLGLEFVNADVLAAARWPGDEAAHAYDASRLAALRREQLLAARRSFVTETVFSHASKVELVRAAVARGYLVHLHVVLVPVELSVARVADRVRRGGHAVPEDKIRQRHDRLWELVGEAAKEADRVTFYDNSSASRPFREVARLDRGRLVGTAAWPTWTAPALVALAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYR6</accession>
    <name>A0A0Q8UYR6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20840</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896061.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46290">
        <property type="protein sequence ID" value="KRC46290"/>
        <property type="gene ID" value="ASE19_20840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="990666at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="2"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="290" mass="30472" checksum="5466493B8960290D" modified="2016-01-20" version="1">MIDLRRLEALVAVHRTGSVSAAATELHYGQPTISHHLRRLEAETGAVLLQRAGRGVRLTAEGLLLARRGEEILGLLARAEAELAAATSLQAGRVRLASFPSGAATLVPEALALLATRHPGIELELTEAEPPEAFELLRAGAVDLALTFAYPDQPEPDQITSVPVLDDPLHLVVPTGEEPAPDLGGYAGRAWVTGCERCRRELLALCADAGFTPAIAFASDDYVAVQSLVAAGLGVTVLPGLALRAHQHPGVVPRRLDAHRRIQLSTYGAPPRPAAVDAVAAALTEVSAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZC0</accession>
    <name>A0A0Q8UZC0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Sulfatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20270</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46199">
        <property type="protein sequence ID" value="KRC46199"/>
        <property type="gene ID" value="ASE19_20270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1067869at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="154"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="domain" description="Sulfatase" evidence="2">
        <location>
            <begin position="260"/>
            <end position="545"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="618" mass="68643" checksum="A5B023DEA0195EBF" modified="2016-01-20" version="1">MLRRGLVASIQGAAIAALVLEIGTLGIFMPRWFKDLFFDSGAFYLDTLVLWVLIGFLWAVLGRLSWSIALVLTTAVVAAIANLVKMQYREEPIYPSDKDFLSEPGFLTSLVSPVLLVVAGVLVVAILVGALRLSARYDKRFPRPPLRRLSRRDLVTVLGLRLAVGLVTTLLLVQAAHFNQPGNVWRGLYELRGNDWRYWNQKTNYRSNGFVGGFLFNMPVKAMATPKGYDEQTMSEVADRATALAERINAGRKGSLDDVNVVLVLSESFTDPTELKGFELDHDPIARTRARMATTTSGHMLAQMYGGGTANMEFETLTGQSLGLFRPQMMSPYQMLVPGLADYPSAVGWFRGQGHDAIAVHPYRVGMYKREQVYDRFGFQSFIHDTTISETDTIDDNPYISDKSAFDEVLHQIDAHERPLMVNLVTMQNHIPVDGNYDDPVKVRGAGKGQDKRIGQYARGLEHTDEALASFLDDLAKGPEKTIVLFYGDHLPGIYGSSVKHANDGLSLYRTPFFIWSSQPGHNVPRQLPTTSPAFFLPLLYAAADAPVPPYLALLDEVHRHVSAIQQGRLLDGSGELVKESDLDAQSAQLLADMRLVQFDFSIGRRFALDRMWPGAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZE3</accession>
    <name>A0A0Q8UZE3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Bifunctional protein FolD</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="6">Methylenetetrahydrofolate dehydrogenase</fullName>
                <ecNumber evidence="6">1.5.1.5</ecNumber>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="6">Methenyltetrahydrofolate cyclohydrolase</fullName>
                <ecNumber evidence="6">3.5.4.9</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="6" type="primary">folD</name>
        <name evidence="9" type="ORF">ASE19_22320</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + NADP(+) = 5,10-methenyltetrahydrofolate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:22812"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57455"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>5,10-methenyltetrahydrofolate + H2O = (6S)-10-formyltetrahydrofolate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:57455"/>
            <dbReference type="EC" id="3.5.4.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.5" evidence="6"/>
    <dbReference type="EC" id="3.5.4.9" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896314.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46546">
        <property type="protein sequence ID" value="KRC46546"/>
        <property type="gene ID" value="ASE19_22320"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1449514at2"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004477">
        <property type="term" value="F:methenyltetrahydrofolate cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004488">
        <property type="term" value="F:methylenetetrahydrofolate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006164">
        <property type="term" value="P:purine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01080">
        <property type="entry name" value="NAD_bind_m-THF_DH_Cyclohyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01576">
        <property type="entry name" value="THF_DHG_CYH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000672">
        <property type="entry name" value="THF_DH/CycHdrlase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020630">
        <property type="entry name" value="THF_DH/CycHdrlase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020631">
        <property type="entry name" value="THF_DH/CycHdrlase_NAD-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00763">
        <property type="entry name" value="THF_DHG_CYH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02882">
        <property type="entry name" value="THF_DHG_CYH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00085">
        <property type="entry name" value="THFDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="6 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 6" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="5 6" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3 6" id="KW-0521">NADP</keyword>
    <keyword evidence="1 6" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 6" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="THF_DHG_CYH" evidence="7">
        <location>
            <begin position="6"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="THF_DHG_CYH_C" evidence="8">
        <location>
            <begin position="123"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="165"/>
            <end position="167"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="233"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="30208" checksum="D057CEFA0C47ED13" modified="2016-01-20" version="1">MTAQKLDGNATAAAIKDELRVRIEKLREQGIVPGLGTVLVGDDPGSRWYVGGKHKDCAEVGIASIRVDLPEVATQEEIEEAVAGLNADPACTGYIVQLPLPRGRDENRVLGLIDPAKDADGLHPTNLGWLVLGNEAPLPCTPYGIVEILRRHDVPIAGAEVVVVGRGITVGRPLGLLLTRRSENATVTLCHTGTVDLAAHVRKADIVVAAAGVPGIITGDMVKPGAAVLDVGVSRVDGKIAGDVADDVWDVAGWVSPNPGGVGPMTRAMLLANVVSMAEKQAARDGGKAAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZP0</accession>
    <name>A0A0Q8UZP0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_20865</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896066.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46295">
        <property type="protein sequence ID" value="KRC46295"/>
        <property type="gene ID" value="ASE19_20865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1022681at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05830">
        <property type="entry name" value="Sortase_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005754">
        <property type="entry name" value="Sortase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023365">
        <property type="entry name" value="Sortase_dom-sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042003">
        <property type="entry name" value="Sortase_E"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04203">
        <property type="entry name" value="Sortase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63817">
        <property type="entry name" value="SSF63817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="52"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="211"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="266" mass="28609" checksum="83524B46AD15461F" modified="2016-01-20" version="1">MAENDQTPTPDPSGTDSVEADGGGVVVRRRRSRPGKGSGAPEAPSKKRRVSFWIGVGLIAAGLAILAWVAWQFWGTNWQSERKQGEVRDALSDGWADGQDVVRTDFGNASAILRIPKFGKSYAIPVLEGSTPEVLAAGVGHMEDTAEAGAAGNYVLAGHRVTHGEPFAEFPSLEAGDKVFVETRAATYTYVLDSGGEDLIIPFTQTWVLDEKPDNPREGGVEPPAEIDGQPNDHIITLLTCSEIFHTDNRSVVFGHLVETARTNQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2U4</accession>
    <name>A0A0Q8V2U4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18465</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48896">
        <property type="protein sequence ID" value="KRC48896"/>
        <property type="gene ID" value="ASE19_18465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="15"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="204" mass="22607" checksum="8CA08C4F0B00DB40" modified="2016-01-20" version="1">MDPAPTVDGRARRWQNRRPELLAAATEYALEVGVSQLTLRPLAEAIGTSITSLNRQLGSKDDLVREVCRGLHGAMVDALNNVWESSAGRPVDVLRGLWALWLTPGYDRQFAFLFELYGMALRDPERYEWFEQSVVRDWMTPLSDALVSSGRPEAEAQVVSTLVMAVIRGLHLDVAATHDVARVNDAYELTLRLLEPHLASPAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V600</accession>
    <name>A0A0Q8V600_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_09930</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the iron-containing alcohol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894666.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52731">
        <property type="protein sequence ID" value="KRC52731"/>
        <property type="gene ID" value="ASE19_09930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1456634at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018506">
        <property type="term" value="F:maleylacetate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08177">
        <property type="entry name" value="MAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001670">
        <property type="entry name" value="ADH_Fe/GldA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039697">
        <property type="entry name" value="Alcohol_dehydrogenase_Fe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034786">
        <property type="entry name" value="MAR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11496">
        <property type="entry name" value="PTHR11496"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00465">
        <property type="entry name" value="Fe-ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe-ADH" evidence="3">
        <location>
            <begin position="9"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="344" mass="34787" checksum="64673E3C855AB53E" modified="2016-01-20" version="1">MVIVHETAPSRVLLGAGARHAVPDEVARLGARRVLVAATGSARSARDEVWAALGERAAARFDGAVVHTPVAVTDEAMAVVEASGVDAVVTIGGGSAIGLGKAVVARTGIPHVAVPTTYAGSEVTPVLGETRDGVKETRREAGLLPGTVVYDVELTLGMPVGLTLTSAVNALAHAVEALWAPDATPVSDALATEASRLLLSSFPAVLASPGDVAGRTALQEGAWLAGTCLATVRMGLHHQLAHALGGTFDLPHAELHTLLLAHVVRHNLPAAPAAAARLTAIAGGDPAAAIATLAASYDGPRRLRDLGVPADGLRAVAERVAASPYPNPGATDADAVEAVLRAAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Y2</accession>
    <name>A0A0Q8V6Y2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MDMPI_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11360</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894917.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52987">
        <property type="protein sequence ID" value="KRC52987"/>
        <property type="gene ID" value="ASE19_11360"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2055578at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017517">
        <property type="entry name" value="CHP03083_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017520">
        <property type="entry name" value="CHP03086"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024344">
        <property type="entry name" value="MDMPI_metal-binding"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11716">
        <property type="entry name" value="MDMPI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03083">
        <property type="entry name" value="TIGR03083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03086">
        <property type="entry name" value="TIGR03086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MDMPI_N" evidence="2">
        <location>
            <begin position="8"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="57"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="202" mass="20097" checksum="E8E9BF1105AB0725" modified="2016-01-20" version="1">MTTLDLGPATSTLADLVASVTDAQLVLPTPCTEYTVGDLVEHVGGLAVAFVGAARKEPAPGSAQGGSGDASRLEPGWRERTTASLAELAEAWRSPAAYDGMTAAGGVDLPGPVAAAVALNEVVVHGWDLATALGVPYEVTDADVEACLGFARPFSTPEAAAGRAPAFGDPLPVPEGAPPLVELLALLGRRAGSPSSAGTGAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Z0</accession>
    <name>A0A0Q8V6Z0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18135</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893240.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48839">
        <property type="protein sequence ID" value="KRC48839"/>
        <property type="gene ID" value="ASE19_18135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="102" mass="11143" checksum="1850722B657EDB4C" modified="2016-01-20" version="1">MEGEDVIDADRALPTGEWTHVAVALGGGVGRLYLDGVEAGRNDALMMTPLLLGRTQRNYLGRSQNVKHPWLAGALDDFRLYGVALTAEEVASLRAGTFDRWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V805</accession>
    <name>A0A0Q8V805_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">50S ribosomal protein L9</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rplI</name>
        <name evidence="9" type="ORF">ASE19_13820</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Binds to the 23S rRNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the bacterial ribosomal protein bL9 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897084.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53418">
        <property type="protein sequence ID" value="KRC53418"/>
        <property type="gene ID" value="ASE19_13820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1959318at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.430.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.5.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00503">
        <property type="entry name" value="Ribosomal_L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000244">
        <property type="entry name" value="Ribosomal_L9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009027">
        <property type="entry name" value="Ribosomal_L9/RNase_H1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020594">
        <property type="entry name" value="Ribosomal_L9_bac/chp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020069">
        <property type="entry name" value="Ribosomal_L9_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036791">
        <property type="entry name" value="Ribosomal_L9_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020070">
        <property type="entry name" value="Ribosomal_L9_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036935">
        <property type="entry name" value="Ribosomal_L9_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21368">
        <property type="entry name" value="PTHR21368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03948">
        <property type="entry name" value="Ribosomal_L9_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01281">
        <property type="entry name" value="Ribosomal_L9_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55653">
        <property type="entry name" value="SSF55653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55658">
        <property type="entry name" value="SSF55658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00158">
        <property type="entry name" value="L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00651">
        <property type="entry name" value="RIBOSOMAL_L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 7" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="RIBOSOMAL_L9" evidence="8">
        <location>
            <begin position="13"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00503"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS00651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="148" mass="15374" checksum="806D63A3C8F76CCA" modified="2016-01-20" version="1">MKIILTQEVENLGAAGDVVEVKDGYGRNYLIPRGFAIRWTRGAQAQADSITAARASRAVRDEAHAAEIKAKLEGAPVDVKVKAGQGGRLFGAVTPADIAAALGEAAGESIDKRTIVLGNPIKSLGNHAVSVKLHDEVSVAVTLNVIPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V820</accession>
    <name>A0A0Q8V820_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897001.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53502">
        <property type="protein sequence ID" value="KRC53502"/>
        <property type="gene ID" value="ASE19_14290"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="114" mass="11596" checksum="AA5DD86324FD36B7" modified="2016-01-20" version="1">MWEQYESPEEKRATAAEFAPAAAPIRAGGTRSGVGVAVCVVGFILSAGVAIGVGSSAEDAQPPGQEHGPLACPVDADGNAIEEYDEFCHDLLEGFGEEDEVPGPGSGLGDESGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V824</accession>
    <name>A0A0Q8V824_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidoglycan glycosyltransferase</fullName>
            <ecNumber evidence="1">2.4.1.129</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_13910</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n)-di-trans,octa-cis-undecaprenyl diphosphate + beta-D-GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate = [GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n+1)-di-trans-octa-cis-undecaprenyl diphosphate + di-trans,octa-cis-undecaprenyl diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23708"/>
            <dbReference type="Rhea" id="RHEA-COMP:9602"/>
            <dbReference type="Rhea" id="RHEA-COMP:9603"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60033"/>
            <dbReference type="ChEBI" id="CHEBI:78435"/>
            <dbReference type="EC" id="2.4.1.129"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.129" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53434">
        <property type="protein sequence ID" value="KRC53434"/>
        <property type="gene ID" value="ASE19_13910"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008955">
        <property type="term" value="F:peptidoglycan glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001264">
        <property type="entry name" value="Glyco_trans_51"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036950">
        <property type="entry name" value="PBP_transglycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028974">
        <property type="entry name" value="TSP_type-3_rpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00912">
        <property type="entry name" value="Transgly"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103647">
        <property type="entry name" value="SSF103647"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 12" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="44"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="Transgly" evidence="11">
        <location>
            <begin position="95"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="10">
        <location>
            <begin position="364"/>
            <end position="625"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="669"/>
            <end position="793"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="736"/>
            <end position="765"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC53434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="793" mass="84510" checksum="26BDAB41B32D3B04" modified="2016-01-20" version="1">MRRTLSTVVEGKRKSGGSASGRPKRTRKGAEKTPRTWKQRLKRFTLWGLVVAVVMGLLGVVSFWIAYRSIDIPDPNAEFLTQTTQVYYSGGKSEIGQFAIQKRESIPYDEMPQFVKDGVVAAENRTFWTDNGLDPKGIISAAFSNAQGNSTRGASTITQQYVKILYLTQERTWKRKVKEAILSLKIKNQKSKQEILEGYLNTIYFGRGAYGIQAAAQSYFDVDASKLTLAQSAVLSAVLNNPVGLDPANGDAAEAALLGRYQYVLDSMEDMGTATSAQVSEIRAALPKFPKIRNVEQYGGQRGHVLTMVRKELVRLGFSEQEINGGGLKITTTFTKKAMNAAKDGVLEEKPEGFGRNLHVAVASVEPGTGAVRGIYAGQDFLDSQLNWAVAGGQAGSTFKPFALAAGIEDGFELKDTFDGNSPYELPGGGRPFTNQGDEDYGRVNLIKATESSINTAFIDMTLAMDDGPQKIIDTANRMGIPPREPANPPYGFPTSSPGLKPDTGVALGAQTVSPINMANGYATIANRGMAADAYIIEKVVDADGDVRYSHKVTDHRAISEGISDDVGYALQQVIKTGSGTKTLPLGRPAGGKTGTATNGKGEVSSAWFVGYTPQLSTAVMYVRGKGNEQLKDWLPSYFGGTYPALTWTAVMEKALEGEEVLDLPGAAYVKGDAPSEGHAPAPPKPTKKPKPKPSKTTEAPPTTTAPTVPPTTVPPTTEAPVDSDGDGISDADEIAQGTDPNNPDTDGDGTPDGSDPQPTNPLVNGGGGNGKPAGALSERSRTRAGRRRRTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8A8</accession>
    <name>A0A0Q8V8A8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_14760</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896920.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53582">
        <property type="protein sequence ID" value="KRC53582"/>
        <property type="gene ID" value="ASE19_14760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_supfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037783">
        <property type="entry name" value="Taf5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19879">
        <property type="entry name" value="PTHR19879"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="SSF50998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 3" id="KW-0853">WD repeat</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="515"/>
            <end position="536"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="788"/>
            <end position="822"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="831"/>
            <end position="862"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="1095"/>
            <end position="1129"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="1134"/>
            <end position="1175"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="597"/>
            <end position="624"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1253" mass="130718" checksum="2A02F7041DE54CA5" modified="2016-01-20" version="1">MTDPQDRIDPAGLGSPGDLAEALTRLRTGLGLTVRDVARTTGIPVATVGGYFSGRHLPPPTQPAPFTALLTVLGVAEADVPAWHEALVRLRRVPGPRREAAAPYRGLESYRVEDAALYVGREHEVEQLWAMFAALVDEEGPTAVAVIGPSGSGKSSLLQAGLLGSEQAAGVEARTLMPADLLDLPADLLAPPAEGAPPRLVVIDQLEQVLTERFTAAERERIVGETDRLAACPRTVVALGLRADFVDRALSEPGLSPLVRRRQLLVGALDLDVLRRVVAEPAQRVGRAIGPEVVDLVAQDLAPRGVLDDPATLPLLSHALLVAWENAGREGLTTSTYVASGGVRGAVQRSAEEAYTALDASGREAARRLFGRLVLVDAEGVAVRRPVVAEDLSDDDALLRAAESFVAQRILTATETGYEISHEVVLVAWPRLRGWVSDDREYLSLRHRVGQAMALWEEHGRGPDTLLRGPLLHVVRDLPETRLRELSGAERAFVGESIAAAGAAAARRRRQRSGLVVLAISALVLALVATVLSVHLNGARADADAARSVAETARAEALSRQVATKATLVRASEPALAARLALAAYRINPTREARSAVLESTGERLPSRLLGPEGPSRAVASPDGSQLAVAGADGAVRLYARTAGHAPEQVSRVQVDEGQLFAASYDATGERLAAAGSGGTVALLDVRDPAHPSLLVSVATPKVDGAPTGVQAVLLDHGVLYAASGIGLLRWRVDGTRLVPLPRIPAMGVVHDVTTSRSGLIAVAGTDGAVSLWRPAAGDRLAEVRRFTAVSDSQLTSVAFSPDGRTVVSGSKDAAVRVFDVDGSADPVRTLGGFTSWVNDLEFSPDGSRLLAGGSGAKIQTWRTRDWQVELDIPIPANVGAVGYADAGSTIVTAAIDGTVRLLPTAGPQPQRLGDTVWNLMRPASGTTVYVGVGAADPSLRAVDLADPTRPVVEPEAFTAPASAGSLDGSASASPDGRFLVGGTEAGKVAVWRTDGQRDAPVVVPAASQLIEATSVSPDSTRVAVASDDGTVTLFDPAPAVPRRVGRVKIDSLAMGVSFSPDGTLLAVGGADNRLHLFTLADRKEVASLEFDNYVYGSAFSPDGRYVAAGGADRTVRVWDIEDATDPQPVGEPVKGPSGTVFNVAWSADGARLAAASQDGRVWMWTVRDGDLTADAELANLGAGAVGVVWSPDGRTLVATGLDGVIGTWATGADGAGERICAVTGSPVTDEEWERLLPGVEHADPCAAPGKGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8F2</accession>
    <name>A0A0Q8V8F2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Spermidine/putrescine ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897075.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53428">
        <property type="protein sequence ID" value="KRC53428"/>
        <property type="gene ID" value="ASE19_13870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1264541at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359796" evidence="1">
        <location>
            <begin position="28"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="392" mass="43382" checksum="C8546DA07D61B428" modified="2016-01-20" version="1">MKSTFRSGRVALACLSLVSVSVLTACGSSDDDKKTDEVEKLGKMEGKVSILAWPGYVEDGSNDPNVDWVSAFEKKTGCEVTSKAYGTSDEALNLAKSGDYDVIAASGDLSLRLIASDEAQAINTDLVPNYANVYDFLKDTEWNSVDGKNYGVPHGYGANLLMFNKKDVDAPTSWGAVFEKDQLEKNKGKVTAYDSPIYIADAALYLMKTQPDLGITNPYALDEDQLAAAVDLLKVQRQYVGEYWSDYLKEIQAFETGDSVVGTTWQVIKNNIKNKDVDVTLPTEGATAWNDTWMLSSQSKSPNCAYAWMDYILSPEANAQATEYFGEAPNSPQACEKTTDPKHCETFHAGDEEYAKQLWFWRTPVEKCLDGRTDVQCTNYAQWTQAWTEIKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8J3</accession>
    <name>A0A0Q8V8J3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Flagellar motor switch protein FliG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_09255</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Bacterial flagellum basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
            <orientation evidence="2">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FliG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895146.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53594">
        <property type="protein sequence ID" value="KRC53594"/>
        <property type="gene ID" value="ASE19_09255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="847822at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000090">
        <property type="entry name" value="Flg_Motor_Flig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023087">
        <property type="entry name" value="Flg_Motor_Flig_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011002">
        <property type="entry name" value="FliG_a-hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032779">
        <property type="entry name" value="FliG_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028263">
        <property type="entry name" value="FliG_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30534">
        <property type="entry name" value="PTHR30534"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01706">
        <property type="entry name" value="FliG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14841">
        <property type="entry name" value="FliG_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14842">
        <property type="entry name" value="FliG_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003161">
        <property type="entry name" value="FliG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00954">
        <property type="entry name" value="FLGMOTORFLIG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48029">
        <property type="entry name" value="SSF48029"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00207">
        <property type="entry name" value="fliG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13" id="KW-0966">Cell projection</keyword>
    <keyword evidence="6" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="13" id="KW-0969">Cilium</keyword>
    <keyword evidence="7" id="KW-0283">Flagellar rotation</keyword>
    <keyword evidence="13" id="KW-0282">Flagellum</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FliG_N" evidence="12">
        <location>
            <begin position="14"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="FliG_M" evidence="11">
        <location>
            <begin position="122"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="FliG_C" evidence="10">
        <location>
            <begin position="226"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF14841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF14842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC53594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="342" mass="37273" checksum="B27C491B6E87D329" modified="2016-01-20" version="1">MLAAGPTSAIVQLGVRKAAVLLIQLGKDRAAQVMSHLSDAEVEAISAEIARLDAVTADETNQVLSEFHDLATAHAHVTQGGFGFAQQLLEQSLGPERAKEIMERLHAAAVQMPFQFLHRADPAQLRGFIADEHPQVIALVLAHMAADKASLLLSGLPAHQQAVVAHRIAVMDRTSPEIVRTVEAILERKLSSMLQPAEVSRVGGVDPLVNIINRSDRPTERQIVEGLEGLDPSLADEVKSRMFMFEDIVGLDDRSVQQVLRQVDTADLALALKGVSESVRTKITSNLSERAAENLIDEVELLGAVRLAQVEEAQQGVIRTIRQLEEQGQIMVRRGNDDEFVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8J5</accession>
    <name>A0A0Q8V8J5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Response regulatory domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_14070</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897043.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53460">
        <property type="protein sequence ID" value="KRC53460"/>
        <property type="gene ID" value="ASE19_14070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="23"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="237" mass="25917" checksum="A98602132B13B7BE" modified="2016-01-20" version="1">MVGRGRRATDAPDGARSRAFRWRVALVEDHLLQRRRAEDLVGAQSGLDVVWSGETLPDLLSWLETVGDGRRPHLVLLDLMVDRGPSVDPEQVRRLVRSGIRVLVLSAMSSPDLVRKVMRAGVAGVVGKRDPEEDVVAAIWTVLGHGHWTSPELARILAAGSDRPQLSDQEERALVLYASGSTMEAVAEALGVKKDTAKKYLSRVKAKYAAAGRPARTKLDLNHLALQDGYLDPPSRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8L0</accession>
    <name>A0A0Q8V8L0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Group 1 truncated hemoglobin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_14530</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
        <text evidence="4">Binds 1 heme group per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the truncated hemoglobin family. Group I subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896959.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53544">
        <property type="protein sequence ID" value="KRC53544"/>
        <property type="gene ID" value="ASE19_14530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1697277at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019825">
        <property type="term" value="F:oxygen binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005344">
        <property type="term" value="F:oxygen carrier activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.490.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009050">
        <property type="entry name" value="Globin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012292">
        <property type="entry name" value="Globin/Proto"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001486">
        <property type="entry name" value="Hemoglobin_trunc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016339">
        <property type="entry name" value="Hemoglobin_trunc_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01152">
        <property type="entry name" value="Bac_globin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002030">
        <property type="entry name" value="Globin_Protozoa/Cyanobacteria"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46458">
        <property type="entry name" value="SSF46458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="3 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0561">Oxygen transport</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="binding site" description="proximal binding residue" evidence="4">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR002030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR002030-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="117" mass="12246" checksum="81ED3C031F5E0DF4" modified="2016-01-20" version="1">MSAYDGIGGAGAVKAAVAVFYQRVLDDPDLRAWFDGIDLARLKAHQRAFLSHALGGPDLFAGRSMSEAHAGLAITDGAFDAVVEHLAMTLHDLGVSADQLVGVRATIEGLRDEVVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8M0</accession>
    <name>A0A0Q8V8M0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Signal peptidase I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14630</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896942.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53560">
        <property type="protein sequence ID" value="KRC53560"/>
        <property type="gene ID" value="ASE19_14630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="580304at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359814" evidence="1">
        <location>
            <begin position="30"/>
            <end position="600"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="600" mass="60798" checksum="466C8674AEC0DB72" modified="2016-01-20" version="1">MRRTNPLVLALVALCATALAVASTTTSDATFTSSSGSRATVSAAADWTPPTVAVTSPGSPLQGTVTLAASASDTESGIASVALQYLAPDATGWVTLCTATAAPYSCSWNTKLGVDGGYDLRARATNTAGYTTVSDVVSTTVANNVLLVLGDPGEVVRGSVALKSTIYNGGLLPWTVTVQYTPNGGTSWKTLCSGLTSPFSCTWSTTSFTNESFDLRAVATSGTTTVTSAVVSDVLVDNAAPGVSMVDPGTPLSGAVNFTATATDAASGVQQVVLQYALGSGSWQNLCTVTTDPFTCRYATTSLTDGTYSFRATATDVAGNSATSTAVTGRVVDNTVSSVSLDDPGTYLSGTATITALANSTAGITSVRIQRAPTGTTSWTDLCTDTTSPYSCAWDTRTVANGSYDLRAVLLDGRGGTTTSAILSARRIDNSTLRAVDVQTTNGNGTAGRLDAGDTVTWTYSEVVAPASISTGWNGSALAVSLRLRDGNLLGGTSKSDAIDVLRGGAAVQLGAVGLREDYVKGRKTATFNATLTATTVTVDGVDRTVVTLVVGTLASGNGLRTVTTASTMLWTPSTAALSATGGACAATPVSESGAADREF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V907</accession>
    <name>A0A0Q8V907_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_07045</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895269.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53838">
        <property type="protein sequence ID" value="KRC53838"/>
        <property type="gene ID" value="ASE19_07045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="739943at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024361">
        <property type="entry name" value="BACON"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19190">
        <property type="entry name" value="BACON_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="29"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="domain" description="BACON" evidence="7">
        <location>
            <begin position="378"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="325"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF19190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="562" mass="58421" checksum="6050EF4F56E93914" modified="2016-01-20" version="1">MTASDALPDDASLVAGVLAGDRQAFAGVYEKYADRLHDFAFSMLRNPVEAQDCVADAFVLMAEKVGQLRDPSRLRPWLYSVVRNECLRTLRGRGREAHDDEWLEAMPDQGRGPEDQVADEAVEDELRELVWAAVEGLNDRDRALIDLHLRQGLEGAELAAAMDVTPSNAYVMLSRARDQVERSLGALLIARRGSSECDELAVVLKDWDGTFSPLIRKRVARHVDGCATCETRRKLMLSPLALLGAVPAFAAPAALRDRVLEDERLVAYYVDAPVVPAAPGPAGPGGGSSDRRRALIASAAVLLLLMGVGLVALLWPEGDDDAIAVDAPTSESSASSSAPVPDVPAVTAPSSVAPPTSAPASPTTAPTTDAALATPGDLELSTRTLRLGTRATSGTVRLTNVGGTAVDVTASARSGWLSASVGSGTLAPGAASTLRISADRSGLAEGAHRGQVAVRWAGGTELVTVELTVARPPVVGPLSAGATSCSVPVSAVVTDGSGVRSVRATWSGAVSGQASASPSGGRWRVTIPVTVGGQVKVTFTATDRTGLTASRSRTFTFDPCPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9R2</accession>
    <name>A0A0Q8V9R2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Type VII secretion integral membrane protein EccD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_08425</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the EccD/Snm4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895510.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54078">
        <property type="protein sequence ID" value="KRC54078"/>
        <property type="gene ID" value="ASE19_08425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1326324at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044049">
        <property type="entry name" value="EccD_transm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006707">
        <property type="entry name" value="T7SS_EccD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024962">
        <property type="entry name" value="YukD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19053">
        <property type="entry name" value="EccD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08817">
        <property type="entry name" value="YukD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017804">
        <property type="entry name" value="Secretion_EccD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03920">
        <property type="entry name" value="T7SS_EccD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="130"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="154"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="182"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="213"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="238"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="268"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="377"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="404"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="436"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="domain" description="EccD" evidence="5">
        <location>
            <begin position="103"/>
            <end position="462"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF19053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="464" mass="46598" checksum="986856F441A14C25" modified="2016-01-20" version="1">MTQAAHSGRAPVTVASGLVRVTVTSGTRRVDLVLPGAVPVAELLPELARSVGLLDPATVHGGYRVGTADGRRLVPDTGLTLQGVEDGGLLTVTAGVDDPPPRVYDDVVEAMADVVEHDLQPWQAASGRRTALLAAGLFLVLGAAALLVQRGSDLAAAATGVVALALCAGAIVLSRAQREPEAAVGVAWLGAGYAAVAGVMFAPDGGVPLGQPLALAGAGALVAGIVCVIGLGPGRTLVFPPVVVGALAAAAGLYLDSADGDGFAPAELLTTVLALIVLAGSVFPWLALGATSTRIDQLYTPADIVADPDDIERDRVAADARIAHEILLAISGTVGLLLVLIVPLAVSLGVTGTLLAVDACLIVMLRTRQYRTGSEVLTGLTAGIAGLATTAVAVLAVHDDWRPTLAVLLAVAGAVLLAATLTPSVPSVRRGRLGDVLESTALIALLPLLVVAVGLFTSVREAIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9S2</accession>
    <name>A0A0Q8V9S2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07640</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53944">
        <property type="protein sequence ID" value="KRC53944"/>
        <property type="gene ID" value="ASE19_07640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2001961at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359845" evidence="1">
        <location>
            <begin position="28"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="148" mass="15362" checksum="AC0130567921FCBD" modified="2016-01-20" version="1">MCSYAAVMKSQGALLALLTGGAVVAVAATATVALVVLDDDDGPTRKTDSPKTERLVLADAYEACDHGDGADRLSLADGGHSIIVSAPDDQPIDALACVLNELGTSEAIVAQMETTTSMMGRQSANQDGIGYEWSYHPDNGMNMTIADE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9W7</accession>
    <name>A0A0Q8V9W7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07485</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895347.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53915">
        <property type="protein sequence ID" value="KRC53915"/>
        <property type="gene ID" value="ASE19_07485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1949773at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="83"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="110"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="14"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="210" mass="22048" checksum="612848F563081D9D" modified="2016-01-20" version="1">MATGPLGTDPAPDLAALQAERDAYARRAAAAEAQLAGLTNELDAARARIAALEAAPVVDSGHLSLFDGTTDDRLTGDGSDPRVLSMVLGATAVVSGMVALLALLNGKLGTPFGFGMVVLTLGLAWGAARTKVVPVEVSVVRGMVYVQQGESSYRFDLRKPETSVDMVGQPGDSGWAVHFGRRGLDPFVVDGSMVDAAEFVRQMREYRADL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA39</accession>
    <name>A0A0Q8VA39_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08600</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895540.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54108">
        <property type="protein sequence ID" value="KRC54108"/>
        <property type="gene ID" value="ASE19_08600"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="38"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="73" mass="7519" checksum="4AD1804894C86E5A" modified="2016-01-20" version="1">MSRGAGEPGAVAVTPRSVDDGGASRDGVRAGLRWERTFAWSGLVFAVLCLLGLEVLGPQPPSFSASAAETGRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA59</accession>
    <name>A0A0Q8VA59_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14880</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896444.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51377">
        <property type="protein sequence ID" value="KRC51377"/>
        <property type="gene ID" value="ASE19_14880"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008792">
        <property type="entry name" value="PQQD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041881">
        <property type="entry name" value="PqqD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05402">
        <property type="entry name" value="PqqD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="97" mass="10815" checksum="AA44FB95936EC7B7" modified="2016-01-20" version="1">MRQRPDQRSAQFWVRDAALQAVEMDGEFVMLGLEQGEYYAVKGVAATLWRHLDVPRDLAGLCELVAEEYDVTPDACRDDVAAFVEQLAGKGMVRATP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA88</accession>
    <name>A0A0Q8VA88_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycerol acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10265</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52793">
        <property type="protein sequence ID" value="KRC52793"/>
        <property type="gene ID" value="ASE19_10265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1756450at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PlsC" evidence="2">
        <location>
            <begin position="219"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="430" mass="45889" checksum="AF983F1140E96192" modified="2016-01-20" version="1">MADAEIIPIGTRGRPGRGTGTRPSSAARGLAPKAGAARKPAKADATPTPEKPASPAATPDAPAATPQAPAARKAAPAKKPAAAKPAATKPEPVIRMAEAAPVIETASLLDGLGDSASAVPAARTEERGLSPLAGIPVGDWLAAFQHAARELFGDQWEPQLARFLAFLRRRLTGDYTVDEYGFDPEVTERFFMAALRPIAQKWFRVEVRGIENIPTEGGALVVSNHSGTIPVDGLMTMVSIHDQSGRYLRPLGADLVFRLPLVGSIARKGGATLACNEDAERMLRGGELVGVWPEGFKGIGKPFSERYKLQRFGRGGFVSAALRTGVPIIPLSVVGAEEIYPLVGNIPSLARLIGVPYIPITPFFPLLGPLGLIPLPSKWLLEFGEPIRTDEYDAGAAEDPMLVFNVTDQVRETIQQTLYSLLMQRESVFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAR6</accession>
    <name>A0A0Q8VAR6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_08995</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54175">
        <property type="protein sequence ID" value="KRC54175"/>
        <property type="gene ID" value="ASE19_08995"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="4">
        <location>
            <begin position="327"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="398" mass="43738" checksum="920E6E7D2AA3042E" modified="2016-01-20" version="1">MGNASHAERGGRRPSIFAEHLGDGALDEFEAVLNEAEQLLGPDSIPPIDEITDFNAATAALESGWQSIRTAFSDGQALAERIDCANIDDLMHRMIRNERIVRTAQVRHRDAVVRLVRETLADLRDVETVDGLISAGAEAVCRLGFDRSIVSRVENNTWMTEFVHLEGDSEWGAEILAAGRAHPVPLVHGLPEDEARRRCKPILVTRVQEREAVHQAVADASASRSYVAAPIMPGKRLLGFVHGDRFFHRGEVTDFDAELIGVFSQGFSFALERALLAEELEQMRATVRQIGLGLQGYAEHGASPSPTPGFIPPHAWQGGSPVRGPEPHVGDVELTRREYDVFQLMAQGDTNHRIARRLSISEGTVKSHVKHILRKLGAANRAEAVARWHSAQSQHIGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBC9</accession>
    <name>A0A0Q8VBC9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_12430</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895104.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53177">
        <property type="protein sequence ID" value="KRC53177"/>
        <property type="gene ID" value="ASE19_12430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041490">
        <property type="entry name" value="KstR2_TetR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17932">
        <property type="entry name" value="TetR_C_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="5">
        <location>
            <begin position="3"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4">
        <location>
            <begin position="26"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="185" mass="19756" checksum="2C29A2D8A55D6A1D" modified="2016-01-20" version="1">MGESRREQILATAADLFAARGFHGVSVAELGAACGISGPALYKHFPSKQAMLAEMLTSISEHLLAVGRERVAAAGGDPAAALRGLVDWHLEFALSRRSLIVVQDRDWESLPAEAREQVRRLQRSYIGLWADQLRTLSPDLDKAGSHAMAQAAFGLLNSTPRAGHGIPDARLHDLLGSMALAALGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBS2</accession>
    <name>A0A0Q8VBS2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04385</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894356.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54725">
        <property type="protein sequence ID" value="KRC54725"/>
        <property type="gene ID" value="ASE19_04385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="285" mass="29422" checksum="3307D97A99D8BF5F" modified="2016-01-20" version="1">MTATAPASAATVLVRNDGPVRILTIDNAPKRNAFDSKMTARLLDLLHEADADSAVRCIVVTGAGTSSFSSGHDLAEVMENPETAGDPVANAAFTTPPLLGTPVIAAVNGNAYAAGFILALNCDLRVAGSNARFCAVGAKIGLVPVGGQLSRLLSVVTYPTAFKMLATAQPIDAHEALASQFVTTVCEPADTLDEAIRLAKQVAEVSPAVIRAIKTGLRATMSHGLDAGLTLEPKLAGVIRELPDGAEGVASFLDKRPAAYPDSPEGLQDQLDEALSSHLTSITRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC27</accession>
    <name>A0A0Q8VC27_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">PDZ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_04695</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S1C family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894304.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54778">
        <property type="protein sequence ID" value="KRC54778"/>
        <property type="gene ID" value="ASE19_04695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="741829at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="94"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="4">
        <location>
            <begin position="356"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="62"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="456" mass="46342" checksum="3D20BF76F8A1BFCD" modified="2016-01-20" version="1">MNDEHDADREPTEAFEPVSQWAPPAPGADRLPDAPAPAAVAPVAPEPTAVLPSDQLTAPMAPSLMPPAPPVPPQPADLTVRRPSAEGAGVAKRLSLVVLVALVVGLGGGFLGALGYDKVAGDDTSGSGYADGGLSDVDLEQSAPLAAPGSVAAVAKAVLPSTVQILAEYNGEAAGATGSGWVMDADGHIVTNNHVVAEAAKDNGPIVVIDHDRNRYDAEVVGRSPVYDLAILYVEKHDKLTPAKLGYSRKLQVGEPVVAIGSPLSLADTVTSGIVSYLHRPVTTGATASESSYIDAVQTDAAINPGNSGGPLVNQKGEVIGVNSAIATAGGGSVDKEAGNIGVGFAIPVEQVRVTADQILKSGKAQYPVIGAKVKTGGIPTGDGAVLDEILPDSPAKAAGLRKGDLITHVNGSRVADGISLIVAIRTFQPGQSIEFTIERGSEQRKVKVTLDGEDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCJ7</accession>
    <name>A0A0Q8VCJ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_05400</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AfsR/DnrI/RedD regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894189.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54892">
        <property type="protein sequence ID" value="KRC54892"/>
        <property type="gene ID" value="ASE19_05400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098542">
        <property type="term" value="P:defense response to other organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005158">
        <property type="entry name" value="BTAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03704">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01043">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="15"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="domain" description="BTAD" evidence="4">
        <location>
            <begin position="91"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="AAA" evidence="2">
        <location>
            <begin position="266"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM01043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1036" mass="110813" checksum="FD54A75AA058F884" modified="2016-01-20" version="1">MPILLTLLDGVRWDGTPVTGDRPQALLAALADAGRTLGTDRLVDLVWGEDEPANPGKALQVLVSRVRSTVGASALVTDGDGYRLAVPAERVDALQLRRSARAARETLADDPAVALRHAETALALAPAGVPDPAAGPLAEVRRRADHDLRDAAVVRARALARSGRHGEALPGLEQAALEAPDDEPLLVDLLRAEAAVRGAAVALERFEAHRTELRDRLGSDPGPDLQRVHRELLAMDSPVREGLRYAAGPLLGRDADLRTVEGLLTAARVVSVVGPGGLGKTTLAHTVAGAATQPVVHFVELVGVTAPEDLVGEVGSALGVRDSVSGRRTLTPEQRADVRARIAQQLDQAPTLLVLDNCEHVVEAVADLVAFLVATTRELRVLTTTRAPLAIAAERVHLLPHLGTEDAVDLFRTRAEAARPGVRLDEDAVRDVVRRLDGLPLAIELAAAKVRVMAPAEIARRLDDRFALLRGGDRSAPDRHRTLLAVIDWSWNLLAERERRALRYLAAFHDGFTLEAAGALLGDDALETVEDLVEQSLLAVTDTDHGTRFRMLETVREFGRLQRETAGESDKVARALQEWAVDLALREGRRLFSTDQIEAMDHLREEETNLADVLREALTAGEQDAVATLFGTLGGYWSISGDHFRSMTVAPAVATALEGWDVPPALVDTARSALCITLFSVRFTGSAGAEQLTGQLEALGAGTDHPALAALVRVTLAQTDGIATDLTHLLDDPDPWVRCLALQWAAHQWENNGDPYGAVDALHRALPLVRSDEGPWRRAMIDAQLAELHAQLGDAARAAEHALLALPVLERLGAVDDAVQNRAIVATATMIGGDLTTAAAQVAELAALAPTGMPGGDVAILRTRAELALITGEVAEGLRLHRVAAEATRAMRMPGSEDVTTPWAISGEAAAVSAYALHGHGDEGRDLRDALSARALDALDPERPFMDYPVGGLVLFGLGLWALVRSDGPAADAVRVLVLAERFSYYRFAPTMQWETARALCDERAPGVLEAVQAEYGERRGPDLVVEARAAVTRVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCN1</accession>
    <name>A0A0Q8VCN1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05560</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894161.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54920">
        <property type="protein sequence ID" value="KRC54920"/>
        <property type="gene ID" value="ASE19_05560"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="14"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="15894" checksum="EE3FEB47F876AF7F" modified="2016-01-20" version="1">MTLRRSSVELTSAWWFWALLSAVFAALTAVFAKVGVKDIDSDVATFVRTIVILLTLGLILLALGKLHSPGEVGGRTWLFLVLSGLATGASWICYFRALKLGDASLVAPVDKLSVVLVAVFGVTLLGERLSVLQWLGVALVGAGAVLLVVSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCT2</accession>
    <name>A0A0Q8VCT2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_06230</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894444.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55034">
        <property type="protein sequence ID" value="KRC55034"/>
        <property type="gene ID" value="ASE19_06230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="916788at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="72"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="99"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="136"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="183"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="234"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="61"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="269" mass="28088" checksum="BD1229BA94219E62" modified="2016-01-20" version="1">MRPDRRIPAWAASVLGTAGLVVAWWLFSALAFRPDAGTTYDPVPSPLAVVRQILDDGFSAYWDFFSVTVHEAAVGFLWGNGLALLLAATVLVAPRIEPVVVQVAVVTYCLPLVAVGGIAIVALGGAVRPGDPSRTAIFLAALSVFFTTVVGALLGLKAADPASLDVVRVFGGGRVRQLFKVRLVAALPAILNALQVAVPTSLLGAVLGEYMGATDRSVGITLIRLQGQLDSVRVWAVFLLCALVALVGYAAFGLLARLATPWVSGRSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCT4</accession>
    <name>A0A0Q8VCT4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_05125</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the glycosyl hydrolase 43 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54847">
        <property type="protein sequence ID" value="KRC54847"/>
        <property type="gene ID" value="ASE19_05125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.115.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006710">
        <property type="entry name" value="Glyco_hydro_43"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023296">
        <property type="entry name" value="Glyco_hydro_beta-prop_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04616">
        <property type="entry name" value="Glyco_hydro_43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75005">
        <property type="entry name" value="SSF75005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359943" evidence="6">
        <location>
            <begin position="23"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="13"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="280"/>
        </location>
    </feature>
    <feature type="site" description="Important for catalytic activity, responsible for pKa modulation of the active site Glu and correct orientation of both the proton donor and substrate" evidence="3">
        <location>
            <position position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR606710-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR606710-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU361187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="386" mass="41149" checksum="544CA0D5BC40C50B" modified="2016-01-20" version="1">MLAALALAASACGGGAGGTPDAAPGTSEAPLIPEPTAVPTVLPSDVLAGEMQDLARLAERMAQKLPQQKRPEPVAVTGGSAEWRPGVAYRGYFADPDIVRARGRWYAYATNTSHLRLPTLVSQDLRTWTPLTDGSGRRVDPLQPAGWVRGRGEGRELWAPGVGRVGDGWTAAYAAPAGTSGGQRHNCIGLARGSSPTGPFRPVGEPLCYGQAQLGVIDPDVFVDSTGVPWLLWKFSGIVHQRPAGLFIRQLSRDGAGFQPGSETRELLTLDRAWEGDTIENPSMVQFRGVTYLFYSGNSWERADYATGYAICAGPEGPCVRQNHGDPLLSTATTGRLGPGGASAFVDGLSLRLVYHAWDRVGRQRLMHVAGLWQRDDGTLEIVDPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCV8</accession>
    <name>A0A0Q8VCV8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Patatin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_11675</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53641">
        <property type="protein sequence ID" value="KRC53641"/>
        <property type="gene ID" value="ASE19_11675"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07208">
        <property type="entry name" value="Pat_hypo_Ecoli_yjju_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002641">
        <property type="entry name" value="PNPLA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037483">
        <property type="entry name" value="YjjU-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01734">
        <property type="entry name" value="Patatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51635">
        <property type="entry name" value="PNPLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="1 2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PNPLA" evidence="3">
        <location>
            <begin position="26"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="GXSXG" evidence="2">
        <location>
            <begin position="59"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="DGA/G" evidence="2">
        <location>
            <begin position="185"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="33897" checksum="6084C19660DD8D16" modified="2016-01-20" version="1">MLAALEARKQARSRPGERTDGLRIALAVEGGGNRAAYSAGMALAIDEAGLTDAFDDVYGTSGGALNAAWLLTGEAQRWMRSWAWPEVAAARITDPRRMLRGGPVVDLRRLVHHVYESITPMDFEAILANPIGFHPMATDARTGTGVDLAPFVTDRDSLQTALRASSCLPLLAGRPVRLGGRTYVDGGLSEGVPYRRALADGATHVLVLRTRRADQHAAPPSRVERILLAPYFLRHGWKAGRAHVDRHQTYTADDLHLAEASAAPIATLVEVRPPLGSPEISRLSGDLPSIADAIERGRVTMNSALGRDESVGPRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCY3</accession>
    <name>A0A0Q8VCY3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amidohydro_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05925</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894094.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54980">
        <property type="protein sequence ID" value="KRC54980"/>
        <property type="gene ID" value="ASE19_05925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1319925at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013108">
        <property type="entry name" value="Amidohydro_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07969">
        <property type="entry name" value="Amidohydro_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro_3" evidence="1">
        <location>
            <begin position="46"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="584" mass="63938" checksum="8B0955407E3E1294" modified="2016-01-20" version="1">MYDVIVKNGRWFDGTGAPSAVRHLGISDGHVATVSPEPLDETGCPRVIDAAGQWVLPGMVDIHTHYDVEVLVQPELSESLRHGITTTFLGSCSLSTVHAGAEDAGDLFGRVEAIPRPYVVAALEDRKTWTTAGEYVAALEALPLGPNIAAFIGHSDIRSARMGLSRSTDPGVVPTAAELARMEADLVEALDEGFIGMSSQELMFDKLDGETCRSRTLPSTYAKGKERRRLNKILRSRGRALQGGPDVGRPQSLVRMAFSSAGWGRKPALKVSLLSAADIKAIPMVAHIFPFLSRTVNRCGGDLRFQHLPVPFEVYADGIALVIFEEFGSGAAALHLSDRIEEQRALLQDEDYRRRFRKDYDNKYGPRVWHRDFFDADITECPDPSVIGKTFGQVGVDRGGVHPVDAFLDLVLEHGDKLRWRTTISNHRPRVLDKLTSDPGVQLGFSDAGAHLRNMAFYNFGLRLLRRVHDAESSGKPFMTVEHAVHRLTGELADWYGLDAGHLRVGDRADVLVVDPARLDDSLDAYVEAPVPAYGNLSRMVNRNDATVSAVLVAGELVVDRGVPTDVVGVRRTGRFLRAGQAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD23</accession>
    <name>A0A0Q8VD23_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09190</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894543.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52605">
        <property type="protein sequence ID" value="KRC52605"/>
        <property type="gene ID" value="ASE19_09190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1356861at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="270" mass="27730" checksum="9BF43685AB26A91E" modified="2016-01-20" version="1">MSGKVVLVTGGGTGIGAAIARLLAGNGDRVVICGRREAPLRAVAEETGAHVVVADVSENAGVEQVVAETVATFGRLDGLVVNHGIIHVGRVDEVTPEQWDDTIRVNLTSPFLLVRAALPHLLAARGAVVSVSSVAALRASDGMAAYSASKAGLLLLTQSLAVDHGRDGLRANAICPGWTATEMGDMEMAELGAERGLSTEDAYRLATAVVPQRRAAQPAEIAATVAWLLSDAASYVNGVVLPVDGGSCIVDPGTLALDPRVSIDLSEEPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD89</accession>
    <name>A0A0Q8VD89_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Biotin carboxylase</fullName>
            <ecNumber evidence="2">6.3.4.14</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_12410</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>biotin</name>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.14" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895208.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53651">
        <property type="protein sequence ID" value="KRC53651"/>
        <property type="gene ID" value="ASE19_12410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="361205at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004075">
        <property type="term" value="F:biotin carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001882">
        <property type="entry name" value="Biotin_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00289">
        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00878">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50979">
        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00188">
        <property type="entry name" value="BIOTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0092">Biotin</keyword>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="11">
        <location>
            <begin position="6"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="10">
        <location>
            <begin position="119"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="domain" description="Lipoyl-binding" evidence="9">
        <location>
            <begin position="535"/>
            <end position="610"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="486"/>
            <end position="509"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC53651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="616" mass="64867" checksum="B68CD981D2914803" modified="2016-01-20" version="1">MTETTVIRSVLVANRGEIARRVFRTCRDLGIRTVAVHTDLDADALHVRDADVAVRVASYLDGDAVLAAAKETGADAIHPGYGFLSENAGFARAVAGAGIAWVGPSPEVIEQMGRKDAARDLAVAAGVPVVPSYDIDDDPATFAYPVLAKAAAGGGGKGMRVVRSAAELTESVAAAKREAINAFGDDTILIEKYVERGRHIEVQVLGDSHGHVVHLGTRECSVQRRHQKVIEEAPAPALDDELRERIHASAVALSASVGYSNAGTIEYLLDAATGDFYFLEMNTRLQVEHPVTEIHSGTDLVELQLAVAAGEPLPFDQAGLRFRDHAMEARIYAEDAFGGFLPQAGTAALVSWPASARVDHALESGQVVSTSYDPMLGKVIVSGPNREAARRALVAALDDTTILGLTTNTGFLRVLAASEEFAEPGGIDTAWLDRNDVPAPDPAPARQIAARLWLDAHSEPGGPFAGDGFRMGSAPAPTVVEFTDGSVTVSPTQRHRPRGLKATEPMTQRVSTHEVELAHQGQRYVFVRPDASTDHGAAVSDGTIVAPMPGTVLDVRVAAGDQVTEGQVLGVVEAMKMELALKAPHDGTVASVGATVGQQVALGAELFVVTGAEEQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDD3</accession>
    <name>A0A0Q8VDD3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06930</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895248.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53817">
        <property type="protein sequence ID" value="KRC53817"/>
        <property type="gene ID" value="ASE19_06930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1860163at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="258" mass="26726" checksum="E97E3EC5B05600BA" modified="2016-01-20" version="1">MTRNKDDVLITAAVRDLDPAPAAALTTAECERAEATFARIVATPIDGPVPVEPSRPRPRRRRLLVATGLAGAAGITIPAVLLGGGSAYASWTPKPEALIGAEADNAGATCTDFFGTKDRGERVTIAESRGDWTFVLLAGNESEAVCLMPDKAVGSETVGREDVFGSHTGGAAALPTPGADTISEGTAMSSTTSEGWFTWATGVVGKDVIGVTVHSSSGLDIEASVASGRFVAWWPDDGTSWSYTVHLTDGSDRPARLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDD8</accession>
    <name>A0A0Q8VDD8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06420</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894471.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55062">
        <property type="protein sequence ID" value="KRC55062"/>
        <property type="gene ID" value="ASE19_06420"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359924" evidence="2">
        <location>
            <begin position="24"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="69" mass="7271" checksum="5C8F68BAEE493CE2" modified="2016-01-20" version="1">MSGLFLALVVLCDLVLRVWCNVAADPYYDGPSFPPGGLQLPVLLYALWIAPVVVGVLACRATASRAVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDL3</accession>
    <name>A0A0Q8VDL3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_09860</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the glycosyltransferase 87 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894656.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52721">
        <property type="protein sequence ID" value="KRC52721"/>
        <property type="gene ID" value="ASE19_09860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1626384at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016758">
        <property type="term" value="F:hexosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018584">
        <property type="entry name" value="GT87"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09594">
        <property type="entry name" value="GT87"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="47"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="183"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="216"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="240"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="273"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="301"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="337"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="367"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="397"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="433"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="457"/>
            <end position="478"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="513" mass="52760" checksum="7299D9457937B509" modified="2016-01-20" version="1">MITRGLVGGVLVFLGGLVTSTLPQSTPVLRLAFLGSLRGHEVGRMLGLVLVLAGLGLLASAWLQLCRTVAVGDRETGDPQDGVALVRFASAVWCAPLVLAPPLFSRDGWSYAAQGMLARVGLSPYQWGPGALAPDNFLPLPTWLTAPPIVQAVDPLWWDTATPYGPVPVFFGAMVAGTTGNPWILVVAHRCLALVGLALLAWSVPRLAHWTGANPAVASAVVLVSPLMVANGVAGLHNDLLMVGLMAAALVVAAERGWVWGAMLAGVAAGVKVPGGLVCVGIALVSLPVGAALLPRLRRLAAVAAVSVGTLLGLGVMTGLGNGWLHALTVPGEVNTPLSATTLVGGVLDFLALHLGVGTEPAFFRDLVRALGLLAALGIGAWVALRWDTGSRRTALAGVAAAGSAFVLLSPVVHLWYFLMLPPFLATQRLRPHLMGALVGVSMLLGLVAPLDSSLHGAYYAIVLGSMTVALLLPVLLLTRGARESVARVVAPLAALDSLAPLTPAAPAELEPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDQ5</accession>
    <name>A0A0Q8VDQ5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06765</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895226.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53795">
        <property type="protein sequence ID" value="KRC53795"/>
        <property type="gene ID" value="ASE19_06765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1220078at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="35"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="393"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="443"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="394"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="446"/>
            <end position="460"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="478" mass="49353" checksum="93BBDC42603AE5A1" modified="2016-01-20" version="1">MTSSSALRRAGIAVAGLAVIAAGVNVVSGNDVDDNTVEVTVVDAGQLENGADVRVSGVRVGEVTDIELKGDKARLLLDLADGVLPLHNDASIQFKPVNLLGESYVDLNPGSDDAPFMDNAVIPEERTSIEVTLQDVLNTFEDPTAAGLASVITTLGEGLDDNGADLAKALKVLSPAMQESARVGNILSEQNDVLTSLVKATDPVVASLAADGGKTLDSLIESTRDTLRALANQQTALEQTISDLPATLTSAQRTLERFRATARAGTPTLRALRPLTGNLEDVVDELRDFADSADPALASLKPVLDEADKLLDTAAPVVAQLRQAGPDLASSAAALKPTSRELLDVHLQDVMDFVRKWSLSTNGRDGLSHYFRGVVYATPTTLKALAQSLIPAGLTDNGPATSKGSTGSKGGGLPNLDVLPGLTGGVDGLLDTVGGLLGLLGKQPPKASSKSATDPTSALGLSAAQEEDLLNQLLGGTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDS1</accession>
    <name>A0A0Q8VDS1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">1,4-dihydroxy-2-naphthoate octaprenyltransferase</fullName>
            <shortName evidence="6">DHNA-octaprenyltransferase</shortName>
            <ecNumber evidence="6">2.5.1.74</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">menA</name>
        <name evidence="7" type="ORF">ASE19_10145</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>1,4-dihydroxy-2-naphthoate + an all-trans-polyprenyl diphosphate + H(+) = a 2-demethylmenaquinol + CO2 + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:26478"/>
            <dbReference type="Rhea" id="RHEA-COMP:9563"/>
            <dbReference type="Rhea" id="RHEA-COMP:9564"/>
            <dbReference type="ChEBI" id="CHEBI:11173"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:55437"/>
            <dbReference type="ChEBI" id="CHEBI:58914"/>
            <dbReference type="EC" id="2.5.1.74"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Quinol/quinone metabolism; menaquinone biosynthesis; menaquinol from 1,4-dihydroxy-2-naphthoate: step 1/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the MenA family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.74" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894702.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52769">
        <property type="protein sequence ID" value="KRC52769"/>
        <property type="gene ID" value="ASE19_10145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1472516at2"/>
    <dbReference type="UniPathway" id="UPA00079">
        <property type="reaction ID" value="UER00168"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046428">
        <property type="term" value="F:1,4-dihydroxy-2-naphthoate octaprenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009234">
        <property type="term" value="P:menaquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd13962">
        <property type="entry name" value="PT_UbiA_UBIAD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01937">
        <property type="entry name" value="MenA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004657">
        <property type="entry name" value="MenA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000537">
        <property type="entry name" value="UbiA_prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044878">
        <property type="entry name" value="UbiA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026046">
        <property type="entry name" value="UBIAD1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13929">
        <property type="entry name" value="PTHR13929"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01040">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005355">
        <property type="entry name" value="UBIAD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0474">Menaquinone biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="38"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="88"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="113"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="136"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="169"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="218"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="295" mass="29963" checksum="291D6E5E872936E0" modified="2016-01-20" version="1">MATAKHWIAGARLRTLPAAVAPVLVGTAVAVYADQGVWWKALLALVVSLALQVGVNYANDYSDGIRGTDDERVGPLRLVGSGLATPGAVKRAAFLSFGVAAVAGLGLAAATSWWLVAVGALSVLAAWYYTGGSKPYGYLGLGEVMVFVFFGLVAVVGTTWVQTEAWGEIGWASVAAGCGVGALACAILVANNLRDIPTDEVAGKITLAVRLGDRRTRAFYAVLVALSAVAVVVLAALTSWWALLGLGFLLPATKAARIVLGGAGGPALIPVLQQTGIAELGWAVLAGAGLVIAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFC6</accession>
    <name>A0A0Q8VFC6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12600</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895663.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53201">
        <property type="protein sequence ID" value="KRC53201"/>
        <property type="gene ID" value="ASE19_12600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1804797at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019920">
        <property type="entry name" value="F420-binding_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011576">
        <property type="entry name" value="Pyridox_Oxase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01243">
        <property type="entry name" value="Putative_PNPOx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03618">
        <property type="entry name" value="Rv1155_F420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Putative_PNPOx" evidence="1">
        <location>
            <begin position="12"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="139" mass="15101" checksum="4C468F4CB65697E3" modified="2016-01-20" version="1">MPVWQPVDWSALPPALAAFWTERHLCTLSTLDRDGAPHAVAIGAALDAEQQCAWVITDGGSQKVANLRRDGRLAVSQVDGARWSTIIGTAEVLSDAASIERACERYAARYRPPRVNPNRVAVRIAVQRFLGSSQVLPQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGM2</accession>
    <name>A0A0Q8VGM2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Thioesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11945</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 4-hydroxybenzoyl-CoA thioesterase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895201.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53645">
        <property type="protein sequence ID" value="KRC53645"/>
        <property type="gene ID" value="ASE19_11945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1786865at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006684">
        <property type="entry name" value="YbgC/YbaW"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00051">
        <property type="entry name" value="TIGR00051"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="2">
        <location>
            <begin position="14"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="134" mass="15018" checksum="729959C213317792" modified="2016-01-20" version="1">MLRHRVRYHEADAQGFLFNGRYLEIADVAMTEFFRYLGFDYSDMVARGMDPSVVQVNMTLEKPAHFDDLLDVDVVCARVGRTSFTLDTIVSRDGVRLARLTLIYVNVEATTETARALPTDIDEALRAAVTAASP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGQ4</accession>
    <name>A0A0Q8VGQ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02045</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892655.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56638">
        <property type="protein sequence ID" value="KRC56638"/>
        <property type="gene ID" value="ASE19_02045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1475841at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030660">
        <property type="entry name" value="ABC_branched_ATPase_LivF/BraG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039137">
        <property type="entry name" value="ABC_branched_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="3"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="239" mass="25873" checksum="1E4E08EBA6F35828" modified="2016-01-20" version="1">MLLEVDGLQVNYGHIEAIRGISFSVPEGTVTSLVGANGAGKTTTLKTISGLRKVRGGAVRFEGEDITHLPPYERVKRGISQSPEGRGCFPGMTVLENLDMGAFLRKDRKTAAYREDMDRVFTLFPRLKEREKQAAGSMSGGEQQMLAIGRALMSNPRLLLLDEPSMGLAPKLIQQIFTIITEINQQGTTVLLVEQNAAQALKRSHDAHILETGEIVRSGTGQDLAVDPAVKAAYLGGDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH31</accession>
    <name>A0A0Q8VH31_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02490</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892730.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56712">
        <property type="protein sequence ID" value="KRC56712"/>
        <property type="gene ID" value="ASE19_02490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1752144at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041098">
        <property type="entry name" value="Rv2175c_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18367">
        <property type="entry name" value="Rv2175c_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rv2175c_C" evidence="1">
        <location>
            <begin position="71"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="126" mass="13630" checksum="D944C168594E4415" modified="2016-01-20" version="1">MSDIPLAQQDLVTLVDAWLSWDEAAELLGVTPAKVRTMVREHQLAAAVPGEPGQGVRQGIPALFIVDGEPVKGLPGLLTSLHDQGFDDRECIAWIFLDADLPGRPIDALHENRGAEAKRRAQALGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHL0</accession>
    <name>A0A0Q8VHL0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07260</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895305.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53873">
        <property type="protein sequence ID" value="KRC53873"/>
        <property type="gene ID" value="ASE19_07260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1374667at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031469">
        <property type="term" value="C:bacterial microcompartment"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1710">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044870">
        <property type="entry name" value="BMC_CP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000249">
        <property type="entry name" value="BMC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037233">
        <property type="entry name" value="CcmK-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00936">
        <property type="entry name" value="BMC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00877">
        <property type="entry name" value="BMC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143414">
        <property type="entry name" value="SSF143414"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51931">
        <property type="entry name" value="BMC_CP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1283">Bacterial microcompartment</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BMC circularly permuted" evidence="2">
        <location>
            <begin position="3"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="BMC circularly permuted" evidence="2">
        <location>
            <begin position="105"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00024446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="200" mass="21415" checksum="78E890EA2DF7D9DC" modified="2016-01-20" version="1">MAELRSFIFIDRLQPQTLCYLGTWIKGTLPRAHMAAQIIEVAPGIDIEPITDVALKHADVAAGILVVERQFGYLEFHGDTGSVKAAAEGVLDALGSDAGSAVRPQILASKIISSIDHQHAFLINRNKIGSMVLPGESMYVLEVQPASYAIVATNEAEKAADIKVVDYRMIGATGRVYLAGKEADVRQAAEAAEEALRGLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHU1</accession>
    <name>A0A0Q8VHU1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Putative fluoride ion transporter CrcB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">crcB</name>
        <name evidence="10" type="ORF">ASE19_07690</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Important for reducing fluoride concentration in the cell, thus reducing its toxicity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the CrcB (TC 9.B.71) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53953">
        <property type="protein sequence ID" value="KRC53953"/>
        <property type="gene ID" value="ASE19_07690"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903425">
        <property type="term" value="F:fluoride transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00454">
        <property type="entry name" value="CrcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003691">
        <property type="entry name" value="CrcB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28259">
        <property type="entry name" value="PTHR28259"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02537">
        <property type="entry name" value="CRCB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="26"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="53"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="92"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="120" mass="11601" checksum="5C015539049A8DE6" modified="2016-01-20" version="1">MAAGGAVGSVLRYAAGHAVPDGSGFPWTTFTINVAGSALLAGLLLLPLVRRSSVVAAGLGPGVLGGFTTFSATSEQARALLADGRTGLAGAYVVGTLAVGLVAVVAVGALAPTLPAEDEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI20</accession>
    <name>A0A0Q8VI20_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">UDP-N-acetyl glucosamine 2-epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08050</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UDP-N-acetylglucosamine 2-epimerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895449.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54017">
        <property type="protein sequence ID" value="KRC54017"/>
        <property type="gene ID" value="ASE19_08050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1117971at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008761">
        <property type="term" value="F:UDP-N-acetylglucosamine 2-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003331">
        <property type="entry name" value="UDP_GlcNAc_Epimerase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029767">
        <property type="entry name" value="WecB-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43174">
        <property type="entry name" value="PTHR43174"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02350">
        <property type="entry name" value="Epimerase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00236">
        <property type="entry name" value="wecB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase_2" evidence="2">
        <location>
            <begin position="28"/>
            <end position="354"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="365" mass="39037" checksum="A7EC1471C74DB5EB" modified="2016-01-20" version="1">MPPLVLHITGARPNFPKAAPVMAALAARGVRQQLVHTGQHYDDNMSAVFFRELELPLPDINLGVGSGSHAAQTAAMMTALEQVVLEQRPDLVVVYGDVNSTLAASLVASKLGIAVAHVEAGLRSFDWTMPEEINRVVTDRLCDVLLATSADAIAHLGSEGVPAERIHLVGNPMIDTLLKQLPAIDPRAKADELGLPERYGVVTLHRPGNVDDPASLAPLVAALRELADELDLVLPVHPRGRARLEASGLFEHPRVLATDPLGYRDFLGLVRGSAAVVTDSGGVQEETTVLGVPCLTLRPNTERPVTITHGTNRLVTADNLLTSYREALAAKADRPDVVPPLWDGRAGERIAHVLTEFLAARQAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIH2</accession>
    <name>A0A0Q8VIH2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Methylmalonyl-CoA carboxyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_23780</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893988.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57354">
        <property type="protein sequence ID" value="KRC57354"/>
        <property type="gene ID" value="ASE19_23780"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034733">
        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011763">
        <property type="entry name" value="COA_CT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011762">
        <property type="entry name" value="COA_CT_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01039">
        <property type="entry name" value="Carboxyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50989">
        <property type="entry name" value="COA_CT_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50980">
        <property type="entry name" value="COA_CT_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CoA carboxyltransferase N-terminal" evidence="2">
        <location>
            <begin position="9"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="domain" description="CoA carboxyltransferase C-terminal" evidence="3">
        <location>
            <begin position="274"/>
            <end position="510"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="528" mass="56805" checksum="3ADF92FFA3F203DA" modified="2016-01-20" version="1">MTEIDLHTTAGKLADLERRTDEAVHAPAAQAQEKQHAKGRKTARERIELLFDEGSFVELDEFARHRSTAFGLEKTRPYGDGVITGYGTVDGRQVCVFSQDFTVFGGSLGEVYGEKITKVMDLAIKTGSPIIGINEGAGARIQEGVVSLGLYGEIFKRNVHASGVIPQISLIMGNCAGGHVYSPAVTDFTIMVDQTSAMFITGPDVIKTVTGEDVTMEELGGARAHNTKSGNAHYMASDEDDAIEYVKALLAFLPQNNLDAAPSYDEVADLEPSAEDLALDTLIPDSANQPYDMHDVITTIVDDADFLEVQALFAPNIITGYGRIEGKPVGIVANQPMQFAGTLDIDASEKAARFVRFCDAFNIPVLTFVDVPGFLPGVDQEHLGIIRRGAKLIYAYAEATVPLVTIITRKAYGGAYDVMGSKHLGADINLSWPTGQIAVMGAQGAANIVHRKTLAAVEAAGGDVEAKRAELIDEYETTLANPYIAAERGYIDAVIQPSQTRAEIVKALRLLATKRETLPPKKHGNIPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ24</accession>
    <name>A0A0Q8VJ24_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidase_M14 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23910</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894005.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57371">
        <property type="protein sequence ID" value="KRC57371"/>
        <property type="gene ID" value="ASE19_23910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="397741at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004181">
        <property type="term" value="F:metallocarboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000834">
        <property type="entry name" value="Peptidase_M14"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00246">
        <property type="entry name" value="Peptidase_M14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00631">
        <property type="entry name" value="Zn_pept"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360076" description="Peptidase_M14 domain-containing protein" evidence="1">
        <location>
            <begin position="33"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M14" evidence="2">
        <location>
            <begin position="39"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="28892" checksum="8C55FA188FD30F11" modified="2016-01-20" version="1">MRDRLGKTLAALAVALVVTASAALVVPAPAPARTATTSRSAEPTYVQQVRTIGRSVRGREIRAWYRGDPAATRVLVVLGQMHGDEPAGRETALWLIRNLRPAAGTGIWVLPTMNPDGRVRHTRKNAHGVDLNRNWPTSGWTRTSRGDRYYGGRRPASEPETRAMMRFLAEVRPHYIASIHQPLRGIGRSSTGRDWQARLARNLGLPLKSFGVGNPSGTVSPTLTGWFNQRYAGTATTIEYGPHPTTRFRTVRAGRGIARAAGVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ62</accession>
    <name>A0A0Q8VJ62_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07350</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53890">
        <property type="protein sequence ID" value="KRC53890"/>
        <property type="gene ID" value="ASE19_07350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="671017at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030807">
        <property type="entry name" value="Methyltran_NanM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04371">
        <property type="entry name" value="methyltran_NanM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="340" mass="39115" checksum="33F817A3307AF0AE" modified="2016-01-20" version="1">MAKARHWATQRTKIAAARAGFLITRMNEESRRYVEISHNDEVPLPAGAEHELRPDNPALDELEAAYDGLGIPAAAHTQWRQSFLKKNLSLAWFRGDNAYVWQFRHLGNSARIRMYLSMLDVKQRDRLGLFDKLSEDGLFGAFTFTFGDRAPISRDLLDSINEINYLDDQMGLSSIEGLRVLDIGAGYGRLAHRMATAFPDIAAYDCIDGVSTSTFLCSYYTRFRELPEAVRVVRLDEHEKLGERYDVAVNIHSFSECSLDAIRWWLDRIAERDIPWLLIVPNTPDELRSTEADGSMKPFRQDVLDRGYELVDDRPIHQSDELRELIDLHDRFYLFKRKGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ97</accession>
    <name>A0A0Q8VJ97_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12645</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895670.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53207">
        <property type="protein sequence ID" value="KRC53207"/>
        <property type="gene ID" value="ASE19_12645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1621406at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="181" mass="19211" checksum="B29AD4E1BAE659DD" modified="2016-01-20" version="1">MLVVPALAASLAACGDDDVAARPELPTETPTLWNPCDALDATFVKKQLDVATTEEDGTATAPQCRFVPKKKGDAALELNYQQFPGTLDEFWEQMGEADDADVRTPTIAGADAARIVVSAEKDQLYVTGFVQNGFLFEVVNLVDPAPYDAALAVRGVEATLTALSAHAEKSRAGRQSASPMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJI7</accession>
    <name>A0A0Q8VJI7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1330 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23445</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893923.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57717">
        <property type="protein sequence ID" value="KRC57717"/>
        <property type="gene ID" value="ASE19_23445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1534521at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010753">
        <property type="entry name" value="DUF1330"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07045">
        <property type="entry name" value="DUF1330"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1330" evidence="1">
        <location>
            <begin position="2"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="95" mass="10159" checksum="8F7E195DE729315D" modified="2016-01-20" version="1">MPAYWISNYRAVHDEAKMSAYAELAGPALIAAGARFLARGLPEKVYEAGLEQRVVIIEFDSVEAAIAAHDSAAYQEALVALGDGAERDLRIVPGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJL7</accession>
    <name>A0A0Q8VJL7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23380</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893910.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57704">
        <property type="protein sequence ID" value="KRC57704"/>
        <property type="gene ID" value="ASE19_23380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1308596at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037119">
        <property type="entry name" value="Haem_oxidase_HugZ-like_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="246" mass="26160" checksum="F36E25A1952D7DFD" modified="2016-01-20" version="1">MSLDPGIDAGRADVHRLAAAARSILACPADVRLVVDGIDDVTEGLEDAHLEMQDHGGRPVFACPADAALAIAATDGRGALLTLHSGLGRAGSPDRDATLTLSGRLEAAGLEECECCTEVRMRVLLHLDFALLAREGDGPDHARIRVPLTAFTSRAHDLNRGFLQRSTEHANHCHQDELRRAVATRTGTRLGEVVGVHLADLRANGVVLQWVDPTGSHEAVLAFPRAAHSAQDLGELLRSELHAGLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJZ8</accession>
    <name>A0A0Q8VJZ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">MBL fold metallo-hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23440</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893922.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57716">
        <property type="protein sequence ID" value="KRC57716"/>
        <property type="gene ID" value="ASE19_23440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="767622at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="307" mass="33318" checksum="C8186E6E44EB9E11" modified="2016-01-20" version="1">MRLRLGRPDLTRYDDRFDVPAARGAFGATFLGVSSVLLDDGETALLTDGFFSRPPMAKVLLGRLSPDEARIDAVLRRAGIDRLAVVAPVHTHYDHAMDSPAVVRRTGGVLAGGTSSANLGRGAGLAEDRILTVTPGRPETFGGFTLTWIESEHCPPDRFPGTIDEPVTPPVSTKAYRCGEAWSILVEHTSGRTALVQGSAGFRPGALAGRTADVAYLGVGQLGLQDQAYLRTYWAETVEAIGAREVVLLHWDDFFRPLDEPLRALPYAGDDLDVTMRAFVALAEQQGVGLHFPTVWQREDPWSISPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMF3</accession>
    <name>A0A0Q8VMF3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06780</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54183">
        <property type="protein sequence ID" value="KRC54183"/>
        <property type="gene ID" value="ASE19_06780"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="134"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="191"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="232"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="27352" checksum="399A5A628C56FB17" modified="2016-01-20" version="1">MGPLAHPVRQSGGLVGFGVDVIRSIPAAIRLYPAEVVRQSAVLIRGNMLVILFMIFMMGALVGITTTFLFEGIGLESYAGAIPAVPMMRGVLVIVFGWVLASKYGCGIVAELGAMRISEEIDAMDVMGVRSLPYLVGTKVVAAIIVIPAMFVIALQIFFMACGLFYVDLLEAVSAGGYTDVLFLLQGPAELAFATISGTVIGFVITVVATFYGYNASGGPVGVGRNTAQSMLVNLVLISLIALMLAQLFYANDYGAAFGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNB8</accession>
    <name>A0A0Q8VNB8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Virulence factor Mce family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_23060</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892546.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58940">
        <property type="protein sequence ID" value="KRC58940"/>
        <property type="gene ID" value="ASE19_23060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01782">
        <property type="entry name" value="MCEVIRFACTOR"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="38"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="117"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC58940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="326" mass="34646" checksum="3C7E3F0A95ACF246" modified="2016-01-20" version="1">MANTSEARILRLGTITLVLMAVISAATFNLGKFPGFRGTTYYAEFSDASGIHKGNIVQVGGIRVGRVTQVALAGDRVKVKFELDGDVEFGKDSAASIEVLNLLGEKFLDVQPGGSGQLAAGGTIPLERTESAYDIVGVFGDLASTTEKIDTEQLSKALDTVADTLDVSAPEIQASFDGIARLSRSVASRDEELQTLLDSSKDVSKVLADRSGDIVGLMKNSDLVFQELTKRKAAVHDLLVNARSLAVELRGLVKDNEKQIGPALKEVDGLVSFLVSKKKKLKETLAALGPYVDILGNIVGTGPWFDAYASNLLALPTGEFVPGFVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNC1</accession>
    <name>A0A0Q8VNC1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Trk system potassium uptake protein TrkA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_22810</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893046.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58990">
        <property type="protein sequence ID" value="KRC58990"/>
        <property type="gene ID" value="ASE19_22810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1768241at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015079">
        <property type="term" value="F:potassium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006036">
        <property type="entry name" value="K_uptake_TrkA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003148">
        <property type="entry name" value="RCK_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02254">
        <property type="entry name" value="TrkA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00335">
        <property type="entry name" value="KUPTAKETRKA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51201">
        <property type="entry name" value="RCK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0630">Potassium</keyword>
    <keyword evidence="2" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="RCK N-terminal" evidence="5">
        <location>
            <begin position="2"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="6">
        <location>
            <begin position="134"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00017378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC58990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="221" mass="24251" checksum="A27CBD4DDCDBFCC7" modified="2016-01-20" version="1">MHVVIMGCGRVGSTLARSLEDRNHTVSIIDTEPDAFRRLGPGFNGDKIPGMGFDQEVLEKAGIRRADAFAAVSSGDNSNIIAARVARETFGIQQVVARIYDPGRAEVYQRLGITTVATVKWTADQVLRRILPAGAEPDFRDPSGTIRVDHIPTPEVWVGARVGQLQEQGRCRVAWIDRLGEGMLPDRDTVIQEGDMLHLITREETAQLAYDVLGRGPEHGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNC6</accession>
    <name>A0A0Q8VNC6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ferredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_23100</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892538.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58948">
        <property type="protein sequence ID" value="KRC58948"/>
        <property type="gene ID" value="ASE19_23100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1873445at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001080">
        <property type="entry name" value="3Fe4S_ferredoxin"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00352">
        <property type="entry name" value="3FE4SFRDOXIN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="2 4" id="KW-0408">Iron</keyword>
    <keyword evidence="3 4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU368020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC58948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="64" mass="7200" checksum="58E132E451B1CE20" modified="2016-01-20" version="1">MKIKVDFDLCESNGLCEAMAPEVFELDDDDFLQLHTEQTTDENIDNVRRAVAACPRAAITLVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP97</accession>
    <name>A0A0Q8VP97_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23865</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893997.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57363">
        <property type="protein sequence ID" value="KRC57363"/>
        <property type="gene ID" value="ASE19_23865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="990666at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="316" mass="34058" checksum="49B6BE5D0B632EF0" modified="2016-01-20" version="1">MASFSLHQLTCFLSTYEHRSLTGAAEELGYAQPSVSEQVRNLEKHLGVPLFRRVGRGVVPTTAADTFRPHAEKVLAAADEAQRAVASIRSLETGTIRFGMFGVARLYGGAGLVADVLERYPGVRVELIGQHSMDVQENLRRGRLEAAMIAVAGLSSEGMTITPIARDELVYVSADPSRLTAPVTAKQLAEASIVMPETTWRESDSARIVLRRMLHEAGYNPSTRIEVEDVETAVELVGRGLADSVVNKGAALQLLPRLAPNAGWVSLRPRVYDTMAIVHRAGATLSPAAQLLIELATQRIQAIIEPVGPAAPPRDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQD9</accession>
    <name>A0A0Q8VQD9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_01460</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896624.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59717">
        <property type="protein sequence ID" value="KRC59717"/>
        <property type="gene ID" value="ASE19_01460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="551294at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="3"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="250"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="499" mass="53172" checksum="3A955CE2596100BB" modified="2016-01-20" version="1">MTLRVTGLAKSFGGVHALRGVDLTIESGEIHALLGHNGAGKSTLIKALGGAFSPDRGTIEVAGHTYDALSPRRSIDAGIAIIFQHLSLVDSLSVVDNIFLGQEQHRAGVVTRANQRAEARRLLDRLGANVSVDARVANLPMGQRQLVEIAKAMSRNPAVLVLDEPTAALSVHEIQALERTVLGLRADGLAICYVTHLLGEVERLADRMTVLRDGQVHVSTPLAGKSRRDIIEAIAEPSSGLPERAPILDADPPQLQLRGLTGPGIGPIDLDVRPGEIVGLYGLIGSGRTRTIETVFGRYRRQGTVSVGGRTVTRRGPRAALAAGLALVPGDRGRQGLFASLSALDNALLPAQRTLSRFGVRNRRRELETFRSLTDALGVRPSSAVAPARAFSGGNQQKLLLGRWINGVLPTTVLMLDEPTQGVDVNARHEIYRVVQAIASERRAAVLFASTDPEEVVTLADRCLVMDQGRVIAAIAGPDLTEDALLAAVHRPTPTEVPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQN4</accession>
    <name>A0A0Q8VQN4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two-component system response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02605</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892751.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56733">
        <property type="protein sequence ID" value="KRC56733"/>
        <property type="gene ID" value="ASE19_02605"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="6"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="146"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="24136" checksum="28689F4EF8595533" modified="2016-01-20" version="1">MTDRIRVMVVDDHPMWRDAVERDLQAAGYDVVAVAATGTEAINRFRATRPQVVVLDLQIPEPSGVEVTATVLADEPSSRVLILSASGEQDDVLAAVKAGATGYIVKSASREELLAAVRRVARGDTVFTPGLAALVLGEFRRINEPETPPGEKLTDRETEILKMVAKGWEYKQIAERLVISHRTVQNHVQNTLRKLQMHNRVELTRYAIEQGLDEDEDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRC4</accession>
    <name>A0A0Q8VRC4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_01285</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896885.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59819">
        <property type="protein sequence ID" value="KRC59819"/>
        <property type="gene ID" value="ASE19_01285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="930905at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="2"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="142"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="222" mass="23904" checksum="E5E6E570E3197F2F" modified="2016-01-20" version="1">MRVYLVDDHEVVRRGVASLLATDDSIEVVGQSGSATVALREILELRPDVAILDAHLADGTGVDICREMRSVDPTIKGLILTTYDDPDAISAAILAGASGYVLKRIEGNSLLSGIKLVAGGHSLIDPTVASRVVEQMEMQRKSLDVICELTPQQRKIFFLIAEGMTNRQIAEELYLAEKTVKNHVTGLLSRLGLQHRTQAALLAVRLRGGDGTTSAPPARRVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRG8</accession>
    <name>A0A0Q8VRG8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03630</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893090.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57057">
        <property type="protein sequence ID" value="KRC57057"/>
        <property type="gene ID" value="ASE19_03630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2071059at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="1">
        <location>
            <begin position="26"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="93" mass="10154" checksum="861F16E2E99C52CC" modified="2016-01-20" version="1">MFGRKRKDQEPTGPVPVDVPIKDEVIRLGQFLKLANLVESGAEAKPVIADGLVQVNGEVDTRRGRQLRVGDVVELRGQAARVAEGDVPDNLPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRN9</accession>
    <name>A0A0Q8VRN9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 11">UDP-N-acetylmuramate--L-alanine ligase</fullName>
            <ecNumber evidence="4 11">6.3.2.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">UDP-N-acetylmuramoyl-L-alanine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">murC</name>
        <name evidence="15" type="ORF">ASE19_02360</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Cell wall formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + L-alanine + UDP-N-acetyl-alpha-D-muramate = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanine</text>
            <dbReference type="Rhea" id="RHEA:23372"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:70757"/>
            <dbReference type="ChEBI" id="CHEBI:83898"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.8"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 11">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the MurCDEF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.8" evidence="4 11"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892708.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56690">
        <property type="protein sequence ID" value="KRC56690"/>
        <property type="gene ID" value="ASE19_02360"/>
    </dbReference>
    <dbReference type="OrthoDB" id="307881at2"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008763">
        <property type="term" value="F:UDP-N-acetylmuramate-L-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00046">
        <property type="entry name" value="MurC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000713">
        <property type="entry name" value="Mur_ligase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005758">
        <property type="entry name" value="UDP-N-AcMur_Ala_ligase_MurC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01225">
        <property type="entry name" value="Mur_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01082">
        <property type="entry name" value="murC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9 11" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="6 11" id="KW-0132">Cell division</keyword>
    <keyword evidence="7 11" id="KW-0133">Cell shape</keyword>
    <keyword evidence="10 11" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11 15" id="KW-0436">Ligase</keyword>
    <keyword evidence="11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 11" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase" evidence="12">
        <location>
            <begin position="17"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_M" evidence="14">
        <location>
            <begin position="120"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="13">
        <location>
            <begin position="305"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="122"/>
            <end position="128"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC56690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="458" mass="47068" checksum="39AD985BF12BD2C7" modified="2016-01-20" version="1">MKIPVPDEILPADQLGHVHLVGIGGAGLSAIARLMHQSGVTVSGSDAHDSAVVRALRDEGITVHVGHDAAHLDGVDTVVATTAAREDNPEIVAATERGLRLWPRSAGLQSVLLGKRVVAIAGTHGKTTTTAMTTVALQEAGLDVTFAIGAEVASLGTNARLGTSEIAVVEADESDGAFLVYTPDIAVITNVDADHLDHWGTEEAYEAAFAEFARGARVTIAERADLADVTAAFDAAADVRGSDLVIEGGATRFGVAAEGVDVDVTLAVPGRHYAQDALFAFAAGLELGGAPEALARGLARHQGAKRRMELVGSAGDGAIRVYDSYAHHPSEIRGDLEAARSLVAGSGRLVVCFQPHLVSRTRIFGAQMGHELGAADEVLVMDVYVAREDPDPEVTGALVAGAVPLPAAQVRFEPDRAAVVPTLVEVARPGDLVLTLGAGDVTTIAPALLAALAEGGVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VS80</accession>
    <name>A0A0Q8VS80_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_24125</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000005">
        <property type="protein sequence ID" value="KRC57345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57345">
        <property type="protein sequence ID" value="KRC57345"/>
        <property type="gene ID" value="ASE19_24125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002514">
        <property type="entry name" value="Transposase_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01527">
        <property type="entry name" value="HTH_Tnp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0814">Transposable element</keyword>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="65"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="106" mass="11863" checksum="B34D52C9A1FFE222" modified="2016-01-20" version="1">MAAPRKYGDELRERATRMAVELRQDPATRAGAIPRVAGQLGMHPETLRNWVRQAEIDGGVRPGTTTSDAQRLAELEQEVRELRRANHILKTSAAFFAAELDRPTSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSA2</accession>
    <name>A0A0Q8VSA2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23945</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894011.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57377">
        <property type="protein sequence ID" value="KRC57377"/>
        <property type="gene ID" value="ASE19_23945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1780176at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3090">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025336">
        <property type="entry name" value="DUF4242"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042557">
        <property type="entry name" value="SCO4226"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14026">
        <property type="entry name" value="DUF4242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="95" mass="10135" checksum="238FBCA50CB272D0" modified="2016-01-20" version="1">MPRFIIEREIAGAKDLTDEQLADIAQTSNGVVDSLGVPYTWVTSYVAGDKIYCVHDADDAETILEHARRGGFPANKVTVVAHEIGPHTASAGARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTG7</accession>
    <name>A0A0Q8VTG7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Inositol-phosphate phosphatase</fullName>
            <ecNumber evidence="2">3.1.3.25</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_22765</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a myo-inositol phosphate + H2O = myo-inositol + phosphate</text>
            <dbReference type="Rhea" id="RHEA:24056"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17268"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:84139"/>
            <dbReference type="EC" id="3.1.3.25"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.25" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892594.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58889">
        <property type="protein sequence ID" value="KRC58889"/>
        <property type="gene ID" value="ASE19_22765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1741160at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008934">
        <property type="term" value="F:inositol monophosphate 1-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052832">
        <property type="term" value="F:inositol monophosphate 3-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052833">
        <property type="term" value="F:inositol monophosphate 4-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046855">
        <property type="term" value="P:inositol phosphate dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046854">
        <property type="term" value="P:phosphatidylinositol phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020583">
        <property type="entry name" value="Inositol_monoP_metal-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000760">
        <property type="entry name" value="Inositol_monophosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020550">
        <property type="entry name" value="Inositol_monophosphatase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00459">
        <property type="entry name" value="Inositol_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00377">
        <property type="entry name" value="IMPHPHTASES"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00629">
        <property type="entry name" value="IMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00630">
        <property type="entry name" value="IMP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC58889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="263" mass="27440" checksum="452997892A413C26" modified="2016-01-20" version="1">MTEPAVLLDLALATALEAAELVRDRAAGTIEVAATKSSDIDVVTAADRASEELIRARILAARPDDSFLGEEGDDIVGSSGVRWVVDPIDGTVNFLYGIPEYAVSIAAELHGEVVAGVVVDVAKHDVYAARADGPATRNGAEIAVRGPADLAHRLVATGFSYVREVRAGQAAAVARLLPEVRDIRRSGSCALDLCRVAAGSLDGYVEEGVNLWDHAAAGLIARRAGARLLVTPGALGRDAVVCGPNHGFQELLDAVRSAGFVRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTK7</accession>
    <name>A0A0Q8VTK7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23600</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893950.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57744">
        <property type="protein sequence ID" value="KRC57744"/>
        <property type="gene ID" value="ASE19_23600"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="65" mass="6878" checksum="26EEAA84E6B8B3C9" modified="2016-01-20" version="1">MHVIELGQAAAVFAIALGLSTWRVVVAPSATNRGTDRLLGLCTAISACWMAATCLVLETSAFQLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VU48</accession>
    <name>A0A0Q8VU48_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Biotin_lipoyl_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_23695</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893968.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57762">
        <property type="protein sequence ID" value="KRC57762"/>
        <property type="gene ID" value="ASE19_23695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2048058at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039562">
        <property type="entry name" value="MFP_biotin_lipoyl_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13533">
        <property type="entry name" value="Biotin_lipoyl_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360383" description="Biotin_lipoyl_2 domain-containing protein" evidence="4">
        <location>
            <begin position="26"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="domain" description="Biotin_lipoyl_2" evidence="5">
        <location>
            <begin position="66"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="127"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="199"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="280"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="529"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="325"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC57762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="568" mass="54391" checksum="0515AEBE751BDBEA" modified="2016-01-20" version="1">MRSLIRSRRVALPLAALALTGTGVAAYGAVADDGVDYRTVAATTGSVEQELSLSGVISPSGRSDLAFGTDGTVARVRVAQGDRVEEGDVIAVLDRASLRAAVDRARSDVATATARLADDRAAQTAAVTTTASSSSGSGSSGRSTSGTPSTGGTGSTSGATAALVRTLHAQQDAVVAAQSAAGDALATAGTALSAQQAACADPVTSTTETPTGSPTGSPTDGPTDGAEPTATTSTTAVLSEACATALTTVQSAQAAASEAQIALQAALETLGGTLAEALGSVQSGSSTPSAQPTAAAPAASAASSAGSSSTPSSGGAGQTVTAATLAQDQASIDRAEADLAAAKADLAGAVVRAPADGTVVSLAVATNADVAAGDTVATVVAPGLTTVAVDVGATQAAQLEQGTDVAVTPAGATEALAGSISRVEHVASSDATTGSDPTYAVEIVLDERDLQLADGMPASVTVVVGSADDVVVVPASAVDDGSVTVLDDEGRAQRVRVTTGIVGATQIEVTDGLEDGDVVVLADLDAELPTGDSDQQTGFGGGFGGGFGGGGGGFPAGGPPSGAGFPGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUK4</accession>
    <name>A0A0Q8VUK4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Inosine-5'-monophosphate dehydrogenase</fullName>
            <shortName evidence="4">IMP dehydrogenase</shortName>
            <shortName evidence="4">IMPD</shortName>
            <shortName evidence="4">IMPDH</shortName>
            <ecNumber evidence="4">1.1.1.205</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">guaB</name>
        <name evidence="12" type="ORF">ASE19_00240</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>H2O + IMP + NAD(+) = H(+) + NADH + XMP</text>
            <dbReference type="Rhea" id="RHEA:11708"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57464"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="EC" id="1.1.1.205"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="4">Mycophenolic acid (MPA) is a non-competitive inhibitor that prevents formation of the closed enzyme conformation by binding to the same site as the amobile flap. In contrast, mizoribine monophosphate (MZP) is a competitive inhibitor that induces the closed conformation. MPA is a potent inhibitor of mammalian IMPDHs but a poor inhibitor of the bacterial enzymes. MZP is a more potent inhibitor of bacterial IMPDH.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Purine metabolism; XMP biosynthesis via de novo pathway; XMP from IMP: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 10">Belongs to the IMPDH/GMPR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.205" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896833.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59507">
        <property type="protein sequence ID" value="KRC59507"/>
        <property type="gene ID" value="ASE19_00240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="532857at2"/>
    <dbReference type="UniPathway" id="UPA00601">
        <property type="reaction ID" value="UER00295"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003938">
        <property type="term" value="F:IMP dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006177">
        <property type="term" value="P:GMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00381">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01964">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005990">
        <property type="entry name" value="IMP_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001093">
        <property type="entry name" value="IMP_DH_GMPRt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11911">
        <property type="entry name" value="PTHR11911"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00478">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000130">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01302">
        <property type="entry name" value="IMP_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0129">CBS domain</keyword>
    <keyword evidence="4" id="KW-0332">GMP biosynthesis</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0520">NAD</keyword>
    <keyword evidence="2 4 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 8" id="KW-0630">Potassium</keyword>
    <keyword evidence="4" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="11">
        <location>
            <begin position="96"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="11">
        <location>
            <begin position="159"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="4 6">
        <location>
            <begin position="345"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="4 6">
        <location>
            <begin position="368"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="4 6">
        <location>
            <begin position="392"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="active site" description="Thioimidate intermediate" evidence="4 5">
        <location>
            <position position="312"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4 5">
        <location>
            <position position="413"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="253"/>
            <end position="255"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="253"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 7">
        <location>
            <begin position="305"/>
            <end position="307"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8">
        <location>
            <position position="307"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8">
        <location>
            <position position="309"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 6">
        <location>
            <position position="310"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8">
        <location>
            <position position="312"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 6">
        <location>
            <position position="428"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="482"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
            <note>ligand shared between two tetrameric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="483"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
            <note>ligand shared between two tetrameric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="484"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
            <note>ligand shared between two tetrameric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000130-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000130-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000130-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000130-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC59507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="499" mass="53185" checksum="1BCA6023041DEBF1" modified="2016-01-20" version="1">MEVPDKFAALGLTYDDVLLLPGHSDLAPDDIDTTSRLTREISIKSPLISAAMDTVTESRMAIAMARQGGIGILHRNLSAEEQAYQVDLVKRTQTGIISNPVTIGPDATLEELDRICGEYRVSGLPVVDADNRLLGICTNRDLRFTPVAEWATTKVDEVMTPMPLFTGDVGISRDDATALLRRHKRERLPLIDEQGRLGGLITVKDFVKSEQFPLASKDGDGRLMVGAAIGYFGDAWERATGLIEAGVDVLVADTAHGHVTLLLDMVRRLKSDPATKHVQVIGGNVATREGAQAFVDAGADAVKVGFGPGSICTTRVVTGCGVPQVTAVYEASLAAGPAGVPVIADGGLQQSGDIAKAIVAGAESVMIGSMLAGCEESPGEVVFHQGKQYKAYRGMGSLGAMSSRGKKSYSKDRYFQAEVTSDDKIVPEGIEGRVAYKGPLAGVAHQLLGGLSQSMFYVGAQSIPELQEKGRFIRITSASLKESHPHDIEMTVEAPNYHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVU5</accession>
    <name>A0A0Q8VVU5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Succinyl-CoA--3-ketoacid-CoA transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23760</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 3-oxoacid CoA-transferase subunit B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893985.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57351">
        <property type="protein sequence ID" value="KRC57351"/>
        <property type="gene ID" value="ASE19_23760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1380130at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008410">
        <property type="term" value="F:CoA-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012791">
        <property type="entry name" value="3-oxoacid_CoA-transf_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004165">
        <property type="entry name" value="CoA_trans_fam_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004164">
        <property type="entry name" value="CoA_transf_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13707">
        <property type="entry name" value="PTHR13707"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01144">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00882">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02428">
        <property type="entry name" value="pcaJ_scoB_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01274">
        <property type="entry name" value="COA_TRANSF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="210" mass="22258" checksum="770DECCAFDFC892D" modified="2016-01-20" version="1">MAWNREQMAARAAAELADGDYVNLGIGLPTLVPNYVPDDVELVLQSENGILGFGAYPTEDAVDPDLINAGKETVTVRKGASFFDSATSFGMIRAGKIDAAILGAMQVSAGGDIANWMIPGKMVKGMGGAMDLVHGARKVVVLMEHVARDGSYKIVDECSLPFTGRGVVQRIITDLCVLDVTPAGLRLVELAPDVTLEEVREKTEPEVLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYG5</accession>
    <name>A0A0Q8VYG5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Flagellar hook-associated protein 2</fullName>
            <shortName evidence="5">HAP2</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Flagellar cap protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_01350</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 5">Homopentamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Secreted</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Bacterial flagellum</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the FliD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896644.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59697">
        <property type="protein sequence ID" value="KRC59697"/>
        <property type="gene ID" value="ASE19_01350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="883503at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009421">
        <property type="term" value="C:bacterial-type flagellum filament cap"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009424">
        <property type="term" value="C:bacterial-type flagellum hook"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040026">
        <property type="entry name" value="FliD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010809">
        <property type="entry name" value="FliD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003481">
        <property type="entry name" value="FliD_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30288">
        <property type="entry name" value="PTHR30288"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07195">
        <property type="entry name" value="FliD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02465">
        <property type="entry name" value="FliD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="FliD_N" evidence="6">
        <location>
            <begin position="12"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="domain" description="FliD_C" evidence="7">
        <location>
            <begin position="213"/>
            <end position="426"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF07195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="444" mass="45403" checksum="D99835D5A51CCF69" modified="2016-01-20" version="1">MAGTSSIGGLASGLDTASIINQLMTLEAASQTKLKTQVTTEQGKVTALQKLNTALQALAGAAKDMVTPTTSTWSTLKATSSNTGVSVAATSTASPGAFTVTVGQTALTHQVAFTDAHAKTDTVTGTTNSVLLKRAGQPDLQIDTANGTLEELAAAINGADAGVRATLVRTGTSGGTDQYRLLVESSTTGQAQDFQLTDSTGAALLGGATVRAGRDAAIDIGGITATSSTNTFTAVVPGVTITLGPSATGTADIAIDRDAATQSTAVKGFVDQVNAILTQVGALTSNSTDAKGLLAGDSTLRRVAGALQDAIYPPDGTSMAKYGIQVDRYGKVTFDADKFAESYKADPVATAAAFTGADGFAARVQKVAEAASDKYKGSVTNAITTHTSTITRLNKSIEDWDGRLELRRSALERQYTALETALSQLNGQSQWLSSQLDSLSASTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYU4</accession>
    <name>A0A0Q8VYU4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Endo/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_01080</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59648">
        <property type="protein sequence ID" value="KRC59648"/>
        <property type="gene ID" value="ASE19_01080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2126917at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360500" description="Endo/exonuclease/phosphatase domain-containing protein" evidence="2">
        <location>
            <begin position="32"/>
            <end position="535"/>
        </location>
    </feature>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="3">
        <location>
            <begin position="249"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="329"/>
            <end position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="535" mass="56295" checksum="0E93C6F1DFAF27B8" modified="2016-01-20" version="1">MTRPVPGLVLGVVAVLVAALLVAGPVPGATAAGTPTVTGVTPAGQDWANARLKVRWTRISGATYQVRWATSTARLSRAKAYVARTNAATSPTLSTRCVPWYAQVRAVRSGRVGPWSRARSVRFTRGTPAPPTIDVTTQTNPAAAQVRWTGTAYAARYRLDWSAAPYGAWAGFAHNYTPWLAAAARGTSVTVPANPAPKDRFLAPAYGNPVFAQLQYDNGCTQTPRLSTYFAAFPKPRDPGDGDLVSIGSYNLENTPHHGSESTKIANIADNIAARNLDVVALQEADAQSAADVIARLENAESQPGWDSFGVGAQQVIWRTSAWQAVAGTGSNLGRPGDGTAATPLPTPGIRLTPAVPEPGRQDVFVASIHLEDGARWDSGATPAERKRDAHLAAGILLDEIASANPDDVPVLAAGDFKGNFGGGSFPVSAGYCDENNGCVGEGQPTFVRAGYWDAQTAVEKVGIAFSTVNKHVAPQPEAATGVAGRPDFILARGAGGFTYYRNVVKTYGDASSAQQSDHNLLFARVMVPRLPETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W1Y3</accession>
    <name>A0A0Q8W1Y3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Hydrolase_4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01470</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896622.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59719">
        <property type="protein sequence ID" value="KRC59719"/>
        <property type="gene ID" value="ASE19_01470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="721431at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="1">
        <location>
            <begin position="48"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="287" mass="30123" checksum="38F0A10942862C25" modified="2016-01-20" version="1">MTQELTLTTPDGIDLAAVLRPGAGPGPRPAVALTGPFTGVKEQVVAVYAEGLAARGITTLAFDHRNFGASGGSRRQHEDSGGKLVDLQTAVDFLSGHTDVTRVGLVGICLGAGYALKAAAFDGRVEALVTIAGAYNSPQAMQAGFGRTAYREKLAELLADSDTTMPAVSPDGPAAMGGPEPFAYYGTSRGATPGWRNEVTTASIHSLLTLDAAIGADFVSPTPVRIIHGTRDEYCSPEGAQQVFDRLDEPRDLLWIETTNHIDLYDQPAYVEPAIASAADWLSTHLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM87</accession>
    <name>A0A0Q8UM87_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">4HBT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19725</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895882.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46106">
        <property type="protein sequence ID" value="KRC46106"/>
        <property type="gene ID" value="ASE19_19725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1712258at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="21"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="116" mass="12107" checksum="C9BA7DC36A154AB5" modified="2016-01-20" version="1">MSILEIEQTLVPEPGATLSVATLLRAFDDSRREIARRLSGLEGAFAGYDDIAYEAPVAEGCAVLVRASVTDVGAASHRVEYVAGPVPAVTSDPAGPSFIRGRGLTLTPQAGLRVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN93</accession>
    <name>A0A0Q8UN93_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21800</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46460">
        <property type="protein sequence ID" value="KRC46460"/>
        <property type="gene ID" value="ASE19_21800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1329134at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="47"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="438" mass="46288" checksum="DD349A7B0F6EE133" modified="2016-01-20" version="1">MVTRILARLERANPVRIGVIAIVLVSVLGVSLFQKQKLSTYLTPGMETVSAQFAGDYRLRPFVTKVKVSGIAVGVVTSVEPDGDGAKVTMDLDSGTSAKLGASPSAAIRPSTLLGGNYYVELKPGGDPARFKGTIPLAQTSVPVELDRVLEALQPDVRTSMRGTIANSRQALDAPTRKEIKELLQHAPNSLDGADGVLRALRGERPEKDLGALVSGLEATARALTKNRGDLDKALAGLDGTADVIGRNGPALRDAVADLPDSLRTAREGLDALDGTLTSVREVSESARPTVRELDGALASLEPALRSARPLMNELVPTLNDLRPVVQDLLQTSVRATEVLGDLDGKPLERVTGPITDMVLSPWHGPEGSLYEGNGNDTPFYQELGYMAAGGSASGNMTDRNGPTLHFQPGAGPGTVTGLPISFEDLFRKLLRPDGSRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNJ4</accession>
    <name>A0A0Q8UNJ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22375</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896324.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46556">
        <property type="protein sequence ID" value="KRC46556"/>
        <property type="gene ID" value="ASE19_22375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1889547at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="119" mass="12281" checksum="323CC3A8DF7A1C68" modified="2016-01-20" version="1">METLRLILLIAHILGFSALIGGLLAQVGPGDKKVTGVMRDGVGTAFLAGLLLVGVLEGGDDPVNHAKVGVKLTIGLVLLVLVMANMRKAKIPNGLWAGLLVLAIAEVCIAVLWSPVHSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNK6</accession>
    <name>A0A0Q8UNK6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Xylulose kinase</fullName>
            <shortName evidence="3 5">Xylulokinase</shortName>
            <ecNumber evidence="3 5">2.7.1.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3 5" type="primary">xylB</name>
        <name evidence="8" type="ORF">ASE19_22475</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the phosphorylation of D-xylulose to D-xylulose 5-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 5">
            <text>ATP + D-xylulose = ADP + D-xylulose 5-phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10964"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17140"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57737"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.17"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the FGGY kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.17" evidence="3 5"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896340.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46571">
        <property type="protein sequence ID" value="KRC46571"/>
        <property type="gene ID" value="ASE19_22475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1619686at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004856">
        <property type="term" value="F:xylulokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042732">
        <property type="term" value="P:D-xylose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005998">
        <property type="term" value="P:xylulose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02220">
        <property type="entry name" value="XylB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000577">
        <property type="entry name" value="Carb_kinase_FGGY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018485">
        <property type="entry name" value="Carb_kinase_FGGY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018483">
        <property type="entry name" value="Carb_kinase_FGGY_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018484">
        <property type="entry name" value="Carb_kinase_FGGY_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006000">
        <property type="entry name" value="Xylulokinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02782">
        <property type="entry name" value="FGGY_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00370">
        <property type="entry name" value="FGGY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000538">
        <property type="entry name" value="GlpK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01312">
        <property type="entry name" value="XylB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00445">
        <property type="entry name" value="FGGY_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 3 5" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="3 4 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0808">Transferase</keyword>
    <keyword evidence="1 3 5" id="KW-0859">Xylose metabolism</keyword>
    <feature type="domain" description="FGGY_N" evidence="6">
        <location>
            <begin position="4"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="FGGY_C" evidence="7">
        <location>
            <begin position="238"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="69"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="222"/>
        </location>
    </feature>
    <feature type="site" description="Important for activity" evidence="3">
        <location>
            <position position="8"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU364073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="467" mass="46741" checksum="AEB18D05B917E813" modified="2016-01-20" version="1">MPLVLGVDSSTQSTKAVLVDAVDGTVVAQQSAPHPPGTEVDPRAWLAAVDTATAGLVERADAVAVAGQQHGMVALGADGSPVRDALLWNDTRSAPAAAALVEELGGPQACAEALGSVLVASFTSTKLRWLRDSSPALAAAVERVLLPHDYVSAHLAAPGTAAFTDRGDASGTGYFDARTGAWRHDLLAAALGHDAALPLVVAPGAVAGHTAAGQVLAAGTGDNMGAALGLGLGPGDVLVSIGTSGVASAVVPDSVADGTGTVTGFADATGGYLPMVTTMNAAGILDLQARWLGVDHDGLAALALASTPGAGGVTLSPYYGGERTPNRPGATGTWTGLTPATTREDLARAAFEALLCSLADAVDALVAATGVEARRVLLTGGAARSAAVRALAPTLLGREVVLPEPGEYVARGAARQAAWALAGTPAPPEWALPTETTLPVVPPHDPTLSDPTVRERYAALRDRLADS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UT63</accession>
    <name>A0A0Q8UT63_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acyl-phosphate glycerol 3-phosphate acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895875.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46099">
        <property type="protein sequence ID" value="KRC46099"/>
        <property type="gene ID" value="ASE19_19675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1756450at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PlsC" evidence="1">
        <location>
            <begin position="32"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="196" mass="21671" checksum="49B4293D6DF202E0" modified="2016-01-20" version="1">MAHTMRVRRAFARTTLRATRWRLVGDVPEAGILVGAPHTSQWDWVAMLMIAWANGVRPRVLVADRYFKGVVGWILRQTGGIPLDRSSPGATIRALLAAAQGDDAFQLVIAAEGTRSKGEYWKPGFYRISQQTGLPISLGFVDGPSRTLGMGPTFHPTGDVRADMDMVRAFYADKHGVRPENRTEPRLREEDVALGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU52</accession>
    <name>A0A0Q8UU52_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17425</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893121.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48716">
        <property type="protein sequence ID" value="KRC48716"/>
        <property type="gene ID" value="ASE19_17425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2061199at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012666">
        <property type="entry name" value="CbtA_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09490">
        <property type="entry name" value="CbtA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="122"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="159"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="191"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="230"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="270" mass="27302" checksum="E3C4D69289CAF09C" modified="2016-01-20" version="1">MSTVPGESSALSPAAFLIRGLAVGLVAGLIAFVVAFALGEPQVDDAIGLEEAAAAHLTPDEVAAEEAAADEDGMVEISRENQKSWGLLTGMLAVGAALGGLASLAAAAVLGRLGGLSARGSTALVGLLGFVAIALVPFAKYPATPPAVGSGDTIGGRTASYFGLLLVSVLAVIAVVVLANRLLARLDGWTAALIGAAAYLVVVTVAGYLLPSVNELGDFPADTLWYFRRASLVTLASLWAAIGVGLTVLVGRMYDRFAADVARRELAASL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUD8</accession>
    <name>A0A0Q8UUD8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17955</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893207.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48806">
        <property type="protein sequence ID" value="KRC48806"/>
        <property type="gene ID" value="ASE19_17955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1859368at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025449">
        <property type="entry name" value="DUF4194"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13835">
        <property type="entry name" value="DUF4194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="209"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="218"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="233" mass="26311" checksum="9142D5E5EF1ECB1E" modified="2016-01-20" version="1">MSVDTDEVEYDEVIDETSVSLFEGDEGGLDYVQRQALVALLKQRFISARTHPRDYDTLREHEQLLRSRLNDLFLDLQIDRDREVAWKRQASPEGGGRFPTLLHDTSWTREETLVLVHLRDRLRAGQAGGDLRVYVDRDDIIDYVASYRPTHATDESGDEKRARNAVLSVAKAGLLIGTASEDRFEISEAVEPLLPLELLQELLEALQKANGTESAEAAPEDADADLFDEENDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUM9</accession>
    <name>A0A0Q8UUM9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Heme ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_22130</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896284.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46515">
        <property type="protein sequence ID" value="KRC46515"/>
        <property type="gene ID" value="ASE19_22130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="551294at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="3"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="254"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="505" mass="54419" checksum="F5CCDE96C0AFA837" modified="2016-01-20" version="1">MRLEIRGLTKRFGSFTANDQIDLVVEPGEIHCLLGENGAGKSTLMNMLYGLLTPTEGEIRLDGEVVSFDGPGDALAAGIGMVHQHFMLVPVFTVAENVMLGHEPTRGPVLNRAKAREQVRELSERYNLKVDPDALVETLPVGVQQRVEIVKALASHAKILILDEPTAVLTPQEIDELMAIMRELKAQGTSIIFITHKLREVKAVADRISVIRRGKVVGTAEPTASETELAELMVGRAVSLTVAKDAPTVGEPVLRGTGISVVDPRGHLVVKDVSFEARAGEVLGIAGVQGNGQTELIKSLLGLLRPAAGTITLDGQDISRYGPRQSLEAGIGFIPEDRSHDGYVGPFSVRENLVLDLYRSDEFSRGPALKLGAIADNAEARIQEFDIRTESAETPVASLSGGNQQKVVVAREFSRPLKVLIASQPTRGVDVGSIEFIHKRIIAERDHGTAIIVVSTELEEIYALSDRIAVMYDGRIVATVPPDTPRQELGLLMAGAVPDSMEAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUP8</accession>
    <name>A0A0Q8UUP8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19660</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895872.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46096">
        <property type="protein sequence ID" value="KRC46096"/>
        <property type="gene ID" value="ASE19_19660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1872172at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045057">
        <property type="entry name" value="Gcn5-rel_NAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031165">
        <property type="entry name" value="GNAT_YJDJ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31435">
        <property type="entry name" value="PTHR31435"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14542">
        <property type="entry name" value="Acetyltransf_CG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51729">
        <property type="entry name" value="GNAT_YJDJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="99" mass="11132" checksum="1CACB914FF7D4F11" modified="2016-01-20" version="1">MTDAGITYVHAPDKHRYEIRDGDELAGFAQYRLPDDAHVDFVHTEVADKYAGQGLAGGVVEFALADVRAQGKRIIPHCPYVARWLTKHHDFDDITDWPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUQ3</accession>
    <name>A0A0Q8UUQ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48904">
        <property type="protein sequence ID" value="KRC48904"/>
        <property type="gene ID" value="ASE19_18510"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="49"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="322"/>
            <end position="429"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="451" mass="48680" checksum="63A4FAE9C52CFF86" modified="2016-01-20" version="1">MTLIDGTGRQPITPATVVFEGDRIIAAGREADVVLPPEATLVDGVGKWLIPGFVNGNVHLLDAWMFMIGPGTIEYLARWEGRFVEVIEEAAQLVLRNGVTTVFDTYNAVDHVLAARDRINAGTSQGARIFAAGAIVGMGGPFSADFHFAGRRAASQSFVNRIDEAFEAGVGHQLSTLPRAEVRARVRDYLARGVDLLKIAVSDHIFMNVGFDRSYQTFSREVLDVIVEEARYAEVPVLTHSLSVESLDTSVQLGADVLIHANYTMGQPYPHELVDRIAASDSWAELQTIHADHTKGLEAAGNWAAQLGGGAYAENERVLIGANAKIIMGTDAGCPSVDHLADLTPAERDDRPWTIGGDHFHWTQSMVEKGMSTLEAISAATLNVAKAYRKDELIGSVEVGKIADLVLLDASPVDDIRNLRAINTVFQGGRAVDRESLPTQALVTAHPRAIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUQ7</accession>
    <name>A0A0Q8UUQ7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">MFS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_18730</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893344.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48942">
        <property type="protein sequence ID" value="KRC48942"/>
        <property type="gene ID" value="ASE19_18730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1452500at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="29"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="64"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="92"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="117"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="151"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="180"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="233"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="271"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="301"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="328"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="366"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="395"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="1"/>
            <end position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC48942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="436" mass="45263" checksum="FF34C1EFDFD50221" modified="2016-01-20" version="1">MGPARVVVRRDPARQVRAFWAALPTEGRWLLSTVAVQTLGRGLTLPFTLIYLHEVRGFDLGLSGTLMALIAIVGFLVTGPGGALTDRYGARAVLLFGITMMVSGNLLLAFATTPWVAAVALVLVGINFGISFPAFNALIAAVVTGELRQQYFGINFALVNLGIGVGGIIGGLFANVDEPSTFTAIFVGDAVTGLIPMALLLGPLRHVHGRAVAPDDGSVPPTVGYLAILREPAVRWLAALTFVGSFIGYGQHEAGVPGYARVAAEVSTRTVGLAFAVNTAVIVLLQFAVLKRISGRRRTRLLIVMAAIWGTSWLVLGIAGAFPGGTVAIAGVLAFMGVFALGETLLQPTVPAMNNDLAADHTRGRYNAISAAAFQGGAVAGPVAAGFLLDHDLGPAYIGLMVLGCLAIAGMALVLERHVPEHANGRGHLTPAASLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV03</accession>
    <name>A0A0Q8UV03_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chaperonin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20455</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GroES chaperonin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896380.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46611">
        <property type="protein sequence ID" value="KRC46611"/>
        <property type="gene ID" value="ASE19_20455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1965002at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00320">
        <property type="entry name" value="cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.33.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020818">
        <property type="entry name" value="Chaperonin_GroES"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037124">
        <property type="entry name" value="Chaperonin_GroES_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10772">
        <property type="entry name" value="PTHR10772"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00166">
        <property type="entry name" value="Cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00883">
        <property type="entry name" value="Cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0143">Chaperone</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="99" mass="10722" checksum="CA361AF3657B2E24" modified="2016-01-20" version="1">MLHDRILCEVDSESGERRSSGGIVIPATAAMGARRLAWSRVVAVGPHCRSVVSGDRVLYDPEDKAEVEVSGEVYVVMRERDIHAVAADRLGDEAAGLYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV23</accession>
    <name>A0A0Q8UV23_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Peroxiredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19490</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893472.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49070">
        <property type="protein sequence ID" value="KRC49070"/>
        <property type="gene ID" value="ASE19_19490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1655733at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003718">
        <property type="entry name" value="OsmC/Ohr_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036102">
        <property type="entry name" value="OsmC/Ohrsf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019904">
        <property type="entry name" value="Peroxiredoxin_OsmC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02566">
        <property type="entry name" value="OsmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82784">
        <property type="entry name" value="SSF82784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03562">
        <property type="entry name" value="osmo_induc_OsmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="146" mass="14435" checksum="DDEFD912062A885D" modified="2016-01-20" version="1">MPTRTGRTAWNGGLQDGTGQVELTSSGAGTFDVSFPKRAADDADGTTSPEELIGAAHSACYAMSLSNEIAQAGGTPVALDVSADVTLGPDPAGGFQLTGITLTVRAEVEGLDEAGFQAAAAAAKVGCPVSKALAAVPITLDAALES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWI3</accession>
    <name>A0A0Q8UWI3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Glutamate--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Glutamyl-tRNA synthetase</fullName>
            <shortName evidence="9">GluRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">gltX</name>
        <name evidence="13" type="ORF">ASE19_20345</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu)</text>
            <dbReference type="Rhea" id="RHEA:23540"/>
            <dbReference type="Rhea" id="RHEA-COMP:9663"/>
            <dbReference type="Rhea" id="RHEA-COMP:9680"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.17"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="9">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.17" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895981.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46209">
        <property type="protein sequence ID" value="KRC46209"/>
        <property type="gene ID" value="ASE19_20345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1409413at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004818">
        <property type="term" value="F:glutamate-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006424">
        <property type="term" value="P:glutamyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00808">
        <property type="entry name" value="GluRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00022">
        <property type="entry name" value="Glu_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045462">
        <property type="entry name" value="aa-tRNA-synth_I_cd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020751">
        <property type="entry name" value="aa-tRNA-synth_I_codon-bd_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008925">
        <property type="entry name" value="aa_tRNA-synth_I_cd-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004527">
        <property type="entry name" value="Glu-tRNA-ligase_bac/mito"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020752">
        <property type="entry name" value="Glu-tRNA-synth_I_codon-bd_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000924">
        <property type="entry name" value="Glu/Gln-tRNA-synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020058">
        <property type="entry name" value="Glu/Gln-tRNA-synth_Ib_cat-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033910">
        <property type="entry name" value="GluRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19269">
        <property type="entry name" value="Anticodon_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00749">
        <property type="entry name" value="tRNA-synt_1c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00987">
        <property type="entry name" value="TRNASYNTHGLU"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48163">
        <property type="entry name" value="SSF48163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00464">
        <property type="entry name" value="gltX_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="tRNA-synt_1c" evidence="11">
        <location>
            <begin position="3"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_2" evidence="12">
        <location>
            <begin position="340"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="9">
        <location>
            <begin position="10"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="9">
        <location>
            <begin position="253"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="256"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF19269"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC46209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="487" mass="53483" checksum="DD5451581B0A0633" modified="2016-01-20" version="1">MSNVRVRMAPSPTGSPHVGLVRTALFNWAFARHHGGTFVFRIEDTDKERSTDESLSSIIDLMRWLGLDWDEGPEVGGPHAPYKQSERSDLYLDALAKLKDSSFTYDCYCTTEEAAARRKAAGSKVQGYDGFCRELSEEQVAAFVADGRQPVVRFRMPDGSITWNDLVRGDVTFETEFVPDFALCRANGDPLYTLVNPVDDALMEITHVLRGEDLLSSTPRQIALYEALKEVGIAKETPQFGHLPYVMGEGNKKLSKRDPEAHALAYRDQGYLPEGLLNYLALLGWAIAADRDVFSLEEMVEAFEISDVVANPARFDLKKCDAINAAHMRLLTIGDITHRALPFLKADGVVSDPVNDADAQLLELAMPLISERINKLSEASALLAFLFVDEDAFEVDADDAAKQIGEAGIPVLQASYDALAALPTWSTDAIQTALQAALVDGLGLKPRNAFGPVRVAVTGRRISPPLFESLELLGRDRSLGRLQRALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXW2</accession>
    <name>A0A0Q8UXW2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Uracil-DNA glycosylase</fullName>
            <shortName evidence="8">UDG</shortName>
            <ecNumber evidence="4 8">3.2.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ung</name>
        <name evidence="11" type="ORF">ASE19_22600</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 8">Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>Hydrolyzes single-stranded DNA or mismatched double-stranded DNA and polynucleotides, releasing free uracil.</text>
            <dbReference type="EC" id="3.2.2.27"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.27" evidence="4 8"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46593">
        <property type="protein sequence ID" value="KRC46593"/>
        <property type="gene ID" value="ASE19_22600"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004844">
        <property type="term" value="F:uracil DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd10027">
        <property type="entry name" value="UDG-F1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00148">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002043">
        <property type="entry name" value="UDG_fam1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018085">
        <property type="entry name" value="Ura-DNA_Glyclase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005122">
        <property type="entry name" value="Uracil-DNA_glycosylase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036895">
        <property type="entry name" value="Uracil-DNA_glycosylase-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11264">
        <property type="entry name" value="PTHR11264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03167">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00986">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52141">
        <property type="entry name" value="SSF52141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00130">
        <property type="entry name" value="U_DNA_GLYCOSYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDG" evidence="10">
        <location>
            <begin position="56"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8 9">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC46593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="24913" checksum="518101023D7C14EC" modified="2016-01-20" version="1">MGALSGLSEKGLMAPDWAEALAPVEDRVAALGQFLRDEIAAGRPYLPAGEHVFRAFSRPLADVRVLIVGQDPYPTPGHPIGLCFAVDRHVRPLPRSLANIYRELADDVGVTPPPHGDLSAWTDQGVMLLNRVLTVRPGASDSHKFQGWEHVTACAIQAVVRRAEAGTPMAAILWGNAARSLKPHLGPIPAVESPHPSPLSASRGFFGSRPFSKVNQLLVERGGQPIDWTLPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY80</accession>
    <name>A0A0Q8UY80_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Recombinase RecB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16610</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893691.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50222">
        <property type="protein sequence ID" value="KRC50222"/>
        <property type="gene ID" value="ASE19_16610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1283891at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038726">
        <property type="entry name" value="PDDEXK_AddAB-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12705">
        <property type="entry name" value="PDDEXK_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PDDEXK_1" evidence="2">
        <location>
            <begin position="32"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="290" mass="32286" checksum="776E410FD5263009" modified="2016-01-20" version="1">MTSAPPSAGLEPADPSERGGTRVDGVEVLGALSPSRVGDFLNCPLLYRFRSIDRLPEPASPAAVRGTVVHRVLEQLFDLPAGERVPSVAETMIAPAWTELQELEPAVTEMFPADGPEIAAWLESCRDVLARYFDLEDPRQLEPADRELYVETLTDSKLLLRGVIDRVDVAPDGSIRICDYKTGPSPSEMFEGKALFQLKFYALVLWRMRGVVPRMLQLVYLGNSEVLRYEPDEQDLLATERKVLAVWDAIRTATEKREFEARKGAGCRWCAHQALCPAYDGTPPPYPVQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYH1</accession>
    <name>A0A0Q8UYH1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17235</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893801.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50332">
        <property type="protein sequence ID" value="KRC50332"/>
        <property type="gene ID" value="ASE19_17235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1831818at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="1">
        <location>
            <begin position="49"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="199" mass="22598" checksum="1177BBE46B2B8854" modified="2016-01-20" version="1">MVSVRDVPESWPVEASTDLHRDAWVLALRSDRVRRPGDHDEEAFRRLVVEHPGAAVVLAIDEQDRVLCIRQYRHAAQARLLELPAGVIDHPGEDPEQVARRELREEAAFRAERWTHLLSTYSSPGYSAEKIHYYLAEGLAPTDRGDFVLEHEEADLEQLWVPFDELVDAVLSGAVADGPVVQVVLALQVRRERERTQGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYM0</accession>
    <name>A0A0Q8UYM0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RNA polymerase subunit sigma-70</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_17690</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893163.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48761">
        <property type="protein sequence ID" value="KRC48761"/>
        <property type="gene ID" value="ASE19_17690"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014325">
        <property type="entry name" value="RNA_pol_sigma-E_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02983">
        <property type="entry name" value="SigE-fam_strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="17"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="104"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC48761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="177" mass="19403" checksum="12A305EC23D04A97" modified="2016-01-20" version="1">MPARDRAAFAEFVAARSGALHRAAYLMVGDVGLAQDLVQEALTKTYVAWPRLRNPQAAESYTRKAITTTAITWFRKRSWNAEKVAETLPERAEAGHADALVARRTLLDALAQLPPRQRAVIVLRYYEDLTERQAAEVLGCAVGTVKSQASAALNRLRDLMGDDLDIDDLLASEGVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYY7</accession>
    <name>A0A0Q8UYY7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17060</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal stress protein A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893772.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50303">
        <property type="protein sequence ID" value="KRC50303"/>
        <property type="gene ID" value="ASE19_17060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2040681at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006015">
        <property type="entry name" value="Universal_stress_UspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01438">
        <property type="entry name" value="UNVRSLSTRESS"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="55"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="136"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="281" mass="29102" checksum="A1999A921D8866AC" modified="2016-01-20" version="1">MSSVIQPGSIVVGADGSKHAARAITWAAEQAHLERRPLVVVTADGASAHRTHAEAVQLARGLAPDLDVIGLSAAGDPRSTLVDLSRDAHLMVLGSRGRGAVRSMLLGSVSATVSRLASCPVVVCRPRVEGLHGKGVLVGVDGTEASLAVLDFAFAQASLHAQPLTAVHCVWDVVAAVAGLRNVRVEDVDLGPEDEAHLLLAESIAGFAEKYPDVPATLRVTHGLVDDVLGGHTSAWDLVVVGRHPLDTVERLVTGSIAAAVVERAHTTVAVVPEPNTLLPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ53</accession>
    <name>A0A0Q8UZ53_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Protease HtpX homolog</fullName>
            <ecNumber evidence="12">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">htpX</name>
        <name evidence="14" type="ORF">ASE19_18700</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="12">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cell membrane</location>
            <topology evidence="12">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the peptidase M48B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="12"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893339.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48937">
        <property type="protein sequence ID" value="KRC48937"/>
        <property type="gene ID" value="ASE19_18700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1918093at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00188">
        <property type="entry name" value="Pept_M48_protease_HtpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022919">
        <property type="entry name" value="Pept_M48_protease_HtpX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001915">
        <property type="entry name" value="Peptidase_M48"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01435">
        <property type="entry name" value="Peptidase_M48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 12" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 12" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="4 12 14" id="KW-0645">Protease</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8 12" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="36"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="148"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="186"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M48" evidence="13">
        <location>
            <begin position="72"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="active site" evidence="12">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="211"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC48937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="290" mass="30951" checksum="DC2B1A5A687AEADF" modified="2016-01-20" version="1">MHRHHNGLKTAGLFGAIFALLLVVGGLIAAATGSSAFIWIFALIGVGTTAYGYWNSDKLAIRAMHAYPVTEAQQPAMYRIVRELSTTAGQPMPALFVSPTQAPNAFATGRNPEHAAVCCTEGILGLLDERELRGVLGHELMHVYNRDILTGSIAAAIAGLISSVAQFLAFTSIFGGGSDEDRPNPLVMIATALLAPFTAAVIQMAISRTREYDADEDGARLTGDPLALASALRKLESGTARAPLAPTPELQNASHMMIANPFRAADVQRMFSTHPPMADRIARLEAMSRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0A6</accession>
    <name>A0A0Q8V0A6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17840</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893189.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48787">
        <property type="protein sequence ID" value="KRC48787"/>
        <property type="gene ID" value="ASE19_17840"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="499" mass="54690" checksum="42BD3BEDAF4EC890" modified="2016-01-20" version="1">MDRIDPDELAIAIKVLRQIPELHPDHEDVRTMKRAASYMYKLIKKTRRAEIRQERQRHDQDIIEKTATGSRMRIDDETAGIPLVSTAKGAFAGELITARGCYICKEDFTLVDAFYHWLCPRCAAMSHAKRDQRTDLTGKRALLTGGRAKIGMYIALRLLRDGAHTTITTRFPKDAVRRFAAMEDSADWIHRLKVVGIDLRDPTQVISLTDDVAADGPLDIIINNACQTVRRLPGAYSHLIDGENTALPSAEALGVKALPEMVTFDRISEAHPAAIAGALSSTAVAHHDGESAEAALAAHNAASLTALSLKAGGASLEAHLAGTAIDAGGLIPDIQDNNSWTQVLDEVDPLELLEVQFCNSIAPFLINSRLRPALRAAVQNGARRAYIVNVSAMEGQFSRRYKGAGHPHTNMAKAALNMMTRTSSGEMFETDKILMTAVDTGWITDERPHHEKLRIAAEGWHAPLDLVDGAARVYDPIVRGEAGEDVYGVFVKDYEPSPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0E9</accession>
    <name>A0A0Q8V0E9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896273.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46503">
        <property type="protein sequence ID" value="KRC46503"/>
        <property type="gene ID" value="ASE19_22065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046037">
        <property type="entry name" value="DUF5995"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19458">
        <property type="entry name" value="DUF5995"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359580" evidence="1">
        <location>
            <begin position="24"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="34608" checksum="481F3D5509112F54" modified="2016-01-20" version="1">MIPLPRLTRASRLVATAACTALAATALALPAAPAHAGDYDGDPDPVRGLLLPPLDALVGLLAPLPVPATPYTGDVCVDGADACIDDVIVRMQDRLDGLLETCSHSAVFSLAYLRVTENVRDAVRSGYFQDRAWLNRLDAVFAEMYFDTTGKWATGQRTGLPKAWQIALQAEDDRAVSGLGNFLLAMNAHINSDFPHVLATVGLTGPDGSHKADHNRYNNRLDSLYVPVFTEEAARFDPTFDDIDAGTVDDTVVGVIMRGWREMVWRHAEALVLARTPAQRALVDKQIEVYSTLQAQLIRTFFAAKPAKRDAWCATHGAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1Q2</accession>
    <name>A0A0Q8V1Q2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_14935</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51387">
        <property type="protein sequence ID" value="KRC51387"/>
        <property type="gene ID" value="ASE19_14935"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007895">
        <property type="entry name" value="MASE1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05231">
        <property type="entry name" value="MASE1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="28"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="50"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="117"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="159"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="204"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="243"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="275"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="7">
        <location>
            <begin position="313"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="8">
        <location>
            <begin position="472"/>
            <end position="603"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC51387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="605" mass="63259" checksum="BA039EF3CD47761B" modified="2016-01-20" version="1">MRLVVWVAAFVAAGYVGRATIIDGTALSLVWPAAGVAALWLATGGRRTRAGDVAALACAAFVVNATTGASPSLALVFVAANLLQVGLFLTFAHRWLPEVWAFGGARPLATLEQLGRLVAAALLGCAAAALLGSLGLHLVTGSGTLLTLLAWWGRNTAGLVAVALVGLLAGPSLSAAARSGGARAVLRVAARGLRPQDAGRVVEALLLTATTFGVYVAVFTSGVGPALAFLVLVPTFWAGIRFAPLAVILHSLACATTAIWLTLLGEGPFLAFHDVTARALVAQLCVLMTLVAGLSLAFSHAQVRAVVAELTEARDHLERLFAAAPQGIAVLSRDGLLISLNPALCDLLGRSEQDLVGRAVASFSADERDHSLADHLARAADDPAAAAETTWHLRDGQGLVRTVSLTSTRLRSGGGDSDEVLLVNVVDVTEREHLQEQLSHLAHHDPLTGLPNRRWFEQELERQLAAARREDRAGALLLLDLDHFKEVNDTLGHAAGDDLLVALGRVLERRARRTDAVARLGGDEFAVLLPGTEIAGAEEVARSIAAAVREHTRTLGGVHERVTVSIGGVPLDGDDPDALLRAADRALYAAKRAGRDQHVVATAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V246</accession>
    <name>A0A0Q8V246_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_15505</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893494.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50025">
        <property type="protein sequence ID" value="KRC50025"/>
        <property type="gene ID" value="ASE19_15505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1108236at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="54"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="84"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="109"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="145"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="171"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="203"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="235"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="273"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="307"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="337"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="369"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="410"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="436"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="13"/>
            <end position="459"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC50025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="470" mass="47788" checksum="CC361C19D06E0811" modified="2016-01-20" version="1">MSTQSQTPRVGLVTALLTGATFLAGLDLFIVNVAFDDIGRDFAADGTPPTLGQLSWILNGYAVVFAALLIPMGRLTDRYGRRTGFVAGVVVFAAASLACGFADDVWTLVAFRVLQAVGAAAMTPASLGLLLGALPPEKRAAGARLWALASAVAAALGPAAGGVLVQVSWHWAFWINVPIGAALALASLRFVPDVRHNEGAPHPDLAGAALIAGGIGALILGLVQGNDWGWTSPGVLGSFAAAVLLVSGFVAVSARHTAPVIDPALLRIRPVRWANLAALAFNTAFGSSLLLGILWMQNAWDYSALRTGLAVAAGPVMVPVASLLAARLLPRVRPGRLIAAGSIAFGVAALWQSMVISTDPSYLTTFLPGWLLGGVGVGLAMPNLVAAATSALPPEQASTGSGLSSMARQVGLALGVSILVGLLGSGPLTLDDVRSGWVFIAIASGIAALVAVAIEGVRAPARAIVPEPVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2B9</accession>
    <name>A0A0Q8V2B9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15250</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917977.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51439">
        <property type="protein sequence ID" value="KRC51439"/>
        <property type="gene ID" value="ASE19_15250"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="158" mass="16971" checksum="AAF6608E0494AC47" modified="2016-01-20" version="1" fragment="single">MPVRRGGPKLVHPGGEGTPGISDLALDEIAIARCEGVGATRRALADALDLRHRLPLVWAGAQKLECETWVVRRVAALSRKLTRDQARIVDVAVAAALGQAPNRILAIAEAKIIEADTTTQQDRIERNQRHNGVWYSQPKPGDQIADVDNAAGVATAYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2L2</accession>
    <name>A0A0Q8V2L2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Allantoin permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_18100</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the purine-cytosine permease (2.A.39) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893233.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48832">
        <property type="protein sequence ID" value="KRC48832"/>
        <property type="gene ID" value="ASE19_18100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="326558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001248">
        <property type="entry name" value="Pur-cyt_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026030">
        <property type="entry name" value="Pur-cyt_permease_Fcy2/21/22"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31806">
        <property type="entry name" value="PTHR31806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02133">
        <property type="entry name" value="Transp_cyt_pur"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002744">
        <property type="entry name" value="Pur-cyt_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="28"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="55"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="95"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="133"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="163"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="196"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="237"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="271"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="322"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="350"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="398"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="430"/>
            <end position="447"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR002744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC48832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="464" mass="48885" checksum="BECB17CDC4B3A355" modified="2016-01-20" version="1">MTDQSVVEKHTIGYVPPEDRHGKVRDLFTLWFGTNIAPLPVVTGAAGVTVFGLDLFWCLVAIVVGHLVGGVFMALHSAQGPQMGIPQMIQSRGQFGSFGALIVVVIAAVMYLAFFASNIVLAGQSLHGITDPVPVEAGIVLGALGSGLIAVIGYKVIHSLNKVATWVLGVGIVLGTAAIFVAGVPAGFWTQGGYSTAGFLATVSLGALWQIAFAPYVSDYSRYLPADVGVRATFNATYLGCTLGSILPFAFGAIVALAMKPGVEVMTGVRDTTGAFGTPLLVLFLLSVISHNALNLYGTVLSIITCVQTFVARWIPTARSRAVLSVVVMAASTYFAIGVSGDFIGHFVDIVLALLVVLVPWTAINLIDFYLIHRGNYDLDSIFAADGGIYGRFNGQAILAYVIGILVQIPFMATPLYTGPIADRLDGADLSWIIGLVATAPVYWFLARGRKLAPSELHPVAAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3I7</accession>
    <name>A0A0Q8V3I7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_17910</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48797">
        <property type="protein sequence ID" value="KRC48797"/>
        <property type="gene ID" value="ASE19_17910"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="SSF49265"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359668" evidence="3">
        <location>
            <begin position="20"/>
            <end position="700"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="4">
        <location>
            <begin position="22"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="4">
        <location>
            <begin position="118"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="4">
        <location>
            <begin position="217"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="4">
        <location>
            <begin position="315"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="700" mass="71232" checksum="7208A25E5B14CD02" modified="2016-01-20" version="1">MLAAVLMATVLFHAGPVAAATKPSAPRAVKATPLNKAVKVTWAAPASTGGSRINAYAVQRRNTTTAPWVTVKYTGAAARAWTETGLVNGARFYYRVMARNGVGWGPTSPQVSAVPRTVPSSPRLLEADVHPGALGVYWSAPSSNGGASVDGYRVEWSTDGSTWTGATTSALPSQASPFLVPLNLGTRYWLQVRAHNAAGYGATTGAGPYRVYTTPGAVTGLAATVSSGQVQLTWTAPASNVALGVPAATAYLVEVSDDGGDTWATDSSTAQSPWVVDDLTNGIDYTFRVSALTGFTKLGPGLATEIAPGAPVGPPPSPRSLALNWDEVAGDHRLSWQPPVSDGGKPLTRYVAEYWNQATPPPYPTFTYSDPSQTSAIVGAFALDHQIRLRACNGPTDADCSPWTDPVGPITGPVTGLVATQSTAGATRTVVVDWDQPDNGLATSYDVLRKAADGDYASLATGVTDTQYADASTVAATDYTYKVVPHGGGTGAPRTTSITTGADQSLTLPTGPTALTEGGASATVAVSIGVVSTTDVVVTLASDSPAVAVESPVTIPAGSLSVDAEISAVQDANAVGEHVVLTATALGGLQTTTAVDVTDNDVPAIVVSSSDVAIPLGTTDTSVLVSLDRKPAGTVTVLATADPSPARASVPAEPLVFGPDDWNVPQALSITGTAKGGTSVTLSSAGLADRVVNISVTNAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3Q1</accession>
    <name>A0A0Q8V3Q1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltranfer_dom domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17555</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893141.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48737">
        <property type="protein sequence ID" value="KRC48737"/>
        <property type="gene ID" value="ASE19_17555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1213908at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025714">
        <property type="entry name" value="Methyltranfer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13847">
        <property type="entry name" value="Methyltransf_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltranfer_dom" evidence="1">
        <location>
            <begin position="177"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="364" mass="38701" checksum="A0D0A473D7F4C7D5" modified="2016-01-20" version="1">MSTFDKDIDKDAAKAFQRRMVGVMNDASLGLLLGIGDELGLLDVLARTGPADSATLAEAAGVDERYLREWLDGIVAGDVAAYDAASGHYSLPPERAACLTPAGGPVNLARSLKMLTMLAGVEPQLRERFRHGGGLDYDHYPRFHALMAEEAAATHDAGLLDIVVPEVPGLHQRLTEGAALADIGCGSGHAVNLLARAYPASRFVGYDLGAEAIEAARSEAAAWGLTNATFEVRDVAELGEVAAYDVVTAFDAIHDQAFPDRVLAGIAASLRPGGTFLMVDIKAESGVENNLRLPWATYLYTLSLMHCMTVSLAHGGAGLGTVWGRQTAVRMLEEAGLVDVEVREVRTDPFNYFYVAHKPGTPPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V483</accession>
    <name>A0A0Q8V483_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">5'-3' exonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17890</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49101">
        <property type="protein sequence ID" value="KRC49101"/>
        <property type="gene ID" value="ASE19_17890"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017108">
        <property type="term" value="F:5'-flap endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033567">
        <property type="term" value="P:DNA replication, Okazaki fragment processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09898">
        <property type="entry name" value="H3TH_53EXO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020046">
        <property type="entry name" value="5-3_exonucl_a-hlix_arch_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002421">
        <property type="entry name" value="5-3_exonuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036279">
        <property type="entry name" value="5-3_exonuclease_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020045">
        <property type="entry name" value="DNA_polI_H3TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038969">
        <property type="entry name" value="FEN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008918">
        <property type="entry name" value="HhH2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42646">
        <property type="entry name" value="PTHR42646"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01367">
        <property type="entry name" value="5_3_exonuc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02739">
        <property type="entry name" value="5_3_exonuc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00475">
        <property type="entry name" value="53EXOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00279">
        <property type="entry name" value="HhH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47807">
        <property type="entry name" value="SSF47807"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="53EXOc" evidence="2">
        <location>
            <begin position="1"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC49101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="288" mass="31026" checksum="D99BAFB7C9C0CF31" modified="2016-01-20" version="1">MLRQIIESIDQFAPDAVIFGLDDRVASYRRDLYPDYKAGRAEKDPDLVDQLDRAGALLDALGLATLTPPGLEADDVNASAATWAGENGWDCVVITSDRDSFAHISEHTRVLRLIDGGINGSPLLTSKALETMYGVPAERYLEFAAVRGDSSDNLPGVQGIGEKTAAILLSHMGSMQAVWADIEHNEGAALVAALDSWSEETGARRISASTLSRLQAPDARRRYEFNLQLMAGRTDLDLGLTPDIPGTPGLLPLDIERVERVVGHLDMASTTALALRVLTGEPASYGRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4H7</accession>
    <name>A0A0Q8V4H7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19245</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893427.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49025">
        <property type="protein sequence ID" value="KRC49025"/>
        <property type="gene ID" value="ASE19_19245"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="141"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="160"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="227" mass="21661" checksum="A898D372151ACAA2" modified="2016-01-20" version="1">MDRTPDLSLPIPETPADPAFVAQLALEARASVPGSGTAPAVAPRGWMAAVAAAAAVAVVAGGAVALTGLGRDDEPEPLPSTSITPSDDASSTDATTPRDDPDGSRGPEDTSSAPVADDPAPGSVGRTDDAGEAQGSTGDDHGGRAGDEATDDSGHHGSDDSTDSGSGSDSGSDSDGGGGRDQASDTPDTPETTDDSGHHGGDSGRDSGSGGTSGSTDGTDAAAPAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5Q9</accession>
    <name>A0A0Q8V5Q9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Sulfate ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_09945</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894669.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52734">
        <property type="protein sequence ID" value="KRC52734"/>
        <property type="gene ID" value="ASE19_09945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1220708at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015419">
        <property type="term" value="F:ABC-type sulfate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102025">
        <property type="term" value="F:ABC-type thiosulfate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03296">
        <property type="entry name" value="ABC_CysA_sulfate_importer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005666">
        <property type="entry name" value="Sulph_transpt1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024765">
        <property type="entry name" value="TOBE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12857">
        <property type="entry name" value="TOBE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00968">
        <property type="entry name" value="3a0106s01"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0764">Sulfate transport</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="3"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="331" mass="35720" checksum="A33120C1E0B510AA" modified="2016-01-20" version="1">MSIEVRGVNKSYGDFVALQDINVSLPTGQLTALLGPSGGGKSTLLRIIAGLESADGGSVEIEGTDATRLPPQKRNVGFVFQHYAVFKHMTVAKNVAFGLEIRKRPKAEIKAKVAELLELVHLSQFAHRLPSQLSGGQRQRLALARALAVEPSVLLLDEPFGALDAKVRKELRDWLRRLHDEVHVTTVFVTHDQEEALEVADEIVVINEGRIEQIGTPDQLYDEPANDFVMGFLGEVTQLGGVRLRPHDIDLSTTPGAPHALAGVIVRALRVGFEVRFTVEVEGQTDPALVVLSRTHARALDLDVGAKVWLRPTTGATSVPVIGAGLGVATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5R8</accession>
    <name>A0A0Q8V5R8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glutamate--cysteine ligase</fullName>
            <ecNumber evidence="1">6.3.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10120</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + L-cysteine + L-glutamate = ADP + gamma-L-glutamyl-L-cysteine + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13285"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58173"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.2"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.2" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894697.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52764">
        <property type="protein sequence ID" value="KRC52764"/>
        <property type="gene ID" value="ASE19_10120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="991285at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004357">
        <property type="term" value="F:glutamate-cysteine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006750">
        <property type="term" value="P:glutathione biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035434">
        <property type="entry name" value="GCL_bact_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006336">
        <property type="entry name" value="GCS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011556">
        <property type="entry name" value="Glut_cys_lig_pln_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34378">
        <property type="entry name" value="PTHR34378"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34378:SF1">
        <property type="entry name" value="PTHR34378:SF1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04107">
        <property type="entry name" value="GCS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00029283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="325" mass="34859" checksum="804E77683E31632B" modified="2016-01-20" version="1">MDARTIRPQVARLFRPCLPGGSRTTRVAVEQELFAVDFFNGGSVHPDRVRRAIAGQPYEPWVAFEPGGQVELSLPCAASAHDAGDQLVSVTRALAADVQGAGIVLSSVPVRAVDPATPRYLRTPRYDAMERHLDTIGPAGRRMMRATASTQPCLDWWPGLAGLEQWRLLHLAAPFIAAATARSAGPTGRLTTWLALDPGRTAFDDRLLHGDDPVAAYAAFAASATRLVDGAEDHLTTLFPPVRPRGSYLEVRFPDAQPTDRVGALLEALAGLLYDDARRRTALASLAGEQHRLAEHWAAAAAGTGDAERGLALLGRHFTDLEAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5T8</accession>
    <name>A0A0Q8V5T8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Flagellar M-ring protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_09250</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">The M ring may be actively involved in energy transduction.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Bacterial flagellum basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the FliF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894554.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52616">
        <property type="protein sequence ID" value="KRC52616"/>
        <property type="gene ID" value="ASE19_09250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="167675at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009431">
        <property type="term" value="C:bacterial-type flagellum basal body, MS ring"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013556">
        <property type="entry name" value="Flag_M-ring_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000067">
        <property type="entry name" value="FlgMring_FliF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006182">
        <property type="entry name" value="FliF_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043427">
        <property type="entry name" value="YscJ/FliF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30046">
        <property type="entry name" value="PTHR30046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01514">
        <property type="entry name" value="YscJ_FliF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08345">
        <property type="entry name" value="YscJ_FliF_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004862">
        <property type="entry name" value="FliF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01009">
        <property type="entry name" value="FLGMRINGFLIF"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00206">
        <property type="entry name" value="fliF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14" id="KW-0966">Cell projection</keyword>
    <keyword evidence="14" id="KW-0969">Cilium</keyword>
    <keyword evidence="14" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="21"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="430"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="domain" description="YscJ_FliF" evidence="12">
        <location>
            <begin position="46"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="domain" description="YscJ_FliF_C" evidence="13">
        <location>
            <begin position="254"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="275"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="287"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR004862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF08345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC52616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="528" mass="55670" checksum="B3D2084E88E9EDE0" modified="2016-01-20" version="1">MQQRLNLALTRTRDTFAAFTAGQKAVAVVGTAALLLAAFLVFRWVSAPTYAPLYSNLSGEDASAIVDELDAEGVSYELADGGSTVMVPRNDVYASRVKLQGKGLPGNSGTGGYEVLKDQGLSTSESQENTNFKRAMEGEVAKTLEAMDGVNTAIVHLAMPEAKVFSDEQEPTTASVLIDTTPGAELDDEQVQSMVSLVARSIDGLDPKNVTISDAAGKLLTADSADGTTGAASTRAKQVEAFQNSMRDKIKTALDTWVGPGNSTTTVTADLDFDKSTTDSRSYSNEKKNPPKSQTKTSEKYSGTNPNSQAGGVVGPDGQMDPTAGANGDGTYENNSETRDNALDEVVERRESAPGGVKSLHIAVTLDATAAADIQPEVVKDQIASAAGIDPQRGDTIEVAVLPFDKSVAEANAAEIAAAKAAEAADRKNALIRNGAIGGGVLLLVLIGWWQARRRAKARDQATSYVVEQLRLDAANRAPVLESPALAALDAAEDDESDSMREDLIALVERQPDDVAALLRGWLVEPRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V611</accession>
    <name>A0A0Q8V611_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10490</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52830">
        <property type="protein sequence ID" value="KRC52830"/>
        <property type="gene ID" value="ASE19_10490"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="19"/>
            <end position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="379" mass="40001" checksum="E73BB04BB9DFCBD4" modified="2016-01-20" version="1">MGETIFAEMSALAVRTGAVNLGQGFPDTDGPVELLDAAVAALHGGANQYAPGIGIPALRQAIARHQQRHYGIELDPDRQVVVTTGCTEAIAGALLGLVDPGDEVVVLEPYYDSYTAIIDFAGGVRRPVTLRAPDFRLDPDELAAAVSPRTKLILLNTPHNPTGRVLDADELAAVARVAQEHDLLVVTDEVYEHLALDGQHVPISTLPGMAERTLTLSSAGKSYSVTGWKVGWATGPGELVAAVTAAKQWLTFTSGAPLQPAVAHALDHQPDFPARLAASLRERRDELVGGLRAAGLTTYSPQGTYFATTDVTDLGWASGGDFCRALPGRAGVVAIPSEVFYDAPDAPGAGRHLVRWAFCKRPEVIAEAVRRLAAADLTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V617</accession>
    <name>A0A0Q8V617_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">J domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09700</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894634.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52696">
        <property type="protein sequence ID" value="KRC52696"/>
        <property type="gene ID" value="ASE19_09700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1820614at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="SSF46565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="113"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="J" evidence="2">
        <location>
            <begin position="4"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="30702" checksum="67C8590E6DBFBCC1" modified="2016-01-20" version="1">MSANLYDLLDVDESASSDEIRASWKAAVADLDPTDRRFRAYSDAASVLLDDEKRAAYDAELIAAREAEAAEAAEAVPAPAPTATLAEEQPAAVPADAPAPVVPRAAPVGPPTWSLVVVGVAALAALVLAVVLLLQPGGKLFSDDSPKKVAEANARFEKAALSAEGAAERIVGPVFSYDYKTMDADLARSQEHLGTDMADKRAKIWPTLRADAEKQQLVVTAKAEGTALTRVSADGRTATVLVFLVQESTSKGVKQTPLHNAISLDLKLKDGTSDDWIIEDACIQAGCNRPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6D1</accession>
    <name>A0A0Q8V6D1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10795</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52890">
        <property type="protein sequence ID" value="KRC52890"/>
        <property type="gene ID" value="ASE19_10795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1615338at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="118"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="182"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="211"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="238" mass="24902" checksum="8464212DF8E5923A" modified="2016-01-20" version="1">MYDSLRPGRARLNVDFLYEIAEALGGTVADVDQWVRDAHRAPADELAAAPPTLRQALVLATACIAANLVGRVMVDVLHLPIYLDMVGTAIAAVALGPWRGAAVGATTNVVGAVGSGWVSIPFALVNVAGALVWGYGARRLRMVRTLPRFLLLNVLVATTCTLVAVPILVVVFGGSVGQGQDFITQTFLDLGNGLVAAVGFSNLVTSMGDKVISGFIALVVISSLPAAFRVGVEWVRIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6F6</accession>
    <name>A0A0Q8V6F6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894737.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52804">
        <property type="protein sequence ID" value="KRC52804"/>
        <property type="gene ID" value="ASE19_10330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1664438at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="49"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="235" mass="26440" checksum="7A63C0FE5B4BB0FA" modified="2016-01-20" version="1">MTHPRGTIPSPNIWHHTATYELENRAADPDGRLWDAMAARADWTDRVVLDLGCGTGFHLPRFAETAAKVIGVEPHDGLVRLARRRLRTRAVSDRAEVLAGTAQAIPLPDSSVDVVHVRWAYFFGRGCEPGLVELDRVLRPGGTALIIDNDGSRSTFGAWFRRGYPHLDPPAEIERFWSLRGWTLDRVDMGWRFASRADLEAVVRIELAPEVADEVLRHHEGVEVDYAVNLWSKTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6H9</accession>
    <name>A0A0Q8V6H9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_10640</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52859">
        <property type="protein sequence ID" value="KRC52859"/>
        <property type="gene ID" value="ASE19_10640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041664">
        <property type="entry name" value="AAA_16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13191">
        <property type="entry name" value="AAA_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="928"/>
            <end position="993"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="118"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="122"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="996" mass="106219" checksum="E13C11238C872C16" modified="2016-01-20" version="1">MMVPVAAHSSLTMVGRDSELAEAIGVLDDAVSAAASGTPQRVVLLSGDAGVGKTRLLRALRDHALDEGWQVLAGHCLDFADSALPYLPFSEVLGRIGADHPDLVEAVAAVHPALTRLQPGRRTRGAGEEKGDGPGHTTDRGDIFVAVHALLDAAATEDPVLLVVEDLHWADQSTRDMLGFLFTRAFARPVAIVASYRSDDLHRRHPLRRQVAEWSRLPQVGRLALSPLTEDAVRALVHELAPEGLREGSVRRIVERAEGNAFFVEELVASSSCDDGDVPGDLADLLLVRLDRLGEEARHVVRVASVAGRRVSHELLAATADVPAAALDAGVRQAVEMNVLEVRGDRYNFRHALLGEAIYDDLLPGERVRLHARFVAALDEGAARGTAAELALHARRANDLDRAVTASIEAGDEAMAVGGPDEAADHYQQALELLEAGDRAERLGVDHSKVVVKTATALTTGGNAVRSGQLLGAQLARLGPTAPAAARSRLLSAWAEVLWITETDLDPVALSAEAVALAPEGESPLRAKVLAAHARILGSHEQEDEAESYATEALALAERLAMPELASDIRTTLSGLRVKTVAGTEQDALRSALEKAVGSAARAGAFQAELRGRWLLGRSYQDTADWEQSARWFRSAMEQGERAGLLWAPFSIESRWQLTWISYILGDWDDVLELMTAIDGQTGPAIPRGIVEPARLAVLSARGEDVLDRLLPLRTLWEDEGGIAVHSAGVEIEAHSARADATAALAVYDDVIEVLTRIWHDHFGARVRLAAQVLGAIAQALPRASAADRRTLAERADRLRADGDAVLAWFRERGSPWGPEGRMWADRLVAEHLRVRWLAGVAGGAAGSREELLAAWQAAADSAAKFGHVPEQARVRASHAQLLRLAGETARAREESDAARAIAERLGAPGLVADLLADGGGARPTAAAAPGLPALTARELEILALVAEGRSNGEIGKQLFISTKTVSVHVSNILGKLGAASRTEAAAIAHREDLLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6P2</accession>
    <name>A0A0Q8V6P2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894852.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52920">
        <property type="protein sequence ID" value="KRC52920"/>
        <property type="gene ID" value="ASE19_10975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1636709at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.660">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009499">
        <property type="entry name" value="DUF1116"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024033">
        <property type="entry name" value="Uncharacterised_dom_sf_YlbE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06545">
        <property type="entry name" value="DUF1116"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359746" evidence="1">
        <location>
            <begin position="30"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="471" mass="48513" checksum="6FB43A0F07E1A5B1" modified="2016-01-20" version="1">MSALLPSLPPTAVAAVGADMFAAAVDAQAVPVERVAWAPPMDGTTDDLATVAADPLRRDANALAVSRMLDVQAMLVGVAPASELLGLEKGQFLHAGPPIEWSRASGPMRGALMGAAAFEGLVEDPEDAAALFAAGSSVSLDPCHHHGAVGPMAGVVSPSMWMFVLEDPATGRRTFCSLNEGLGKVLRYGAYSPDVLTRLRWMRDVLGPLLGEAVAAAGPIDATAILGQMLQMGDEAHNRNRAGTLMLLRDLAPSLVRSSRSSEEVAEAFAFIGGNDHFFLNVAMPACKLALDAGRDIPGSTMVVAMARNGTDFGIQVSGTGDQWFTGPAQLADGLFLGDYGPDDANPDIGDSAITETAGIGGFAMAAAPAIVRFVGGTVPDALATSRRMREITIGENDRWPIPVLDFAGAATGIDVSAVCRTGILPQINTGMAGKVAGVGQVGAGLVTPPASIFPAALAELARRTCARAQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6P8</accession>
    <name>A0A0Q8V6P8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Autoinducer 2-binding protein LsrB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_11445</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Part of the ABC transporter complex LsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the LsrC and LsrD permeases.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">The complex is composed of two ATP-binding proteins (LsrA), two transmembrane proteins (LsrC and LsrD) and a solute-binding protein (LsrB).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894932.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53002">
        <property type="protein sequence ID" value="KRC53002"/>
        <property type="gene ID" value="ASE19_11445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="669710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015762">
        <property type="term" value="P:rhamnose transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030159">
        <property type="entry name" value="LsrB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013459">
        <property type="entry name" value="RhaS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025997">
        <property type="entry name" value="SBP_2_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46847:SF4">
        <property type="entry name" value="PTHR46847:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13407">
        <property type="entry name" value="Peripla_BP_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02637">
        <property type="entry name" value="RhaS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0574">Periplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359754" description="Autoinducer 2-binding protein LsrB" evidence="7">
        <location>
            <begin position="24"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_4" evidence="8">
        <location>
            <begin position="42"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007639"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF13407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="340" mass="35352" checksum="A21DCA83B1FC583D" modified="2016-01-20" version="1">MRINSKRFAAGAALALVASLGLAACGSDDNGSGGGDGGDITVTFLPKNLGNPYFDTSDAGGEKAVKEFGGTYDEVGPDTAGPDAQVSFIDTAAAQGIKGLVVSANDPTALCDSLDAARDAGTKVVTFDSDTDAECRDLFINQATSEGIAKVQVDMIAEQIGDAGEIAILSAAANATNQNAWIKLMEEELKSHPDIKLVDTVYGDDDDQTSFDKTAALLADHPNLKGIISPTTVGISAAARYLSTSKSKGKVFLTGLGTPNQMRDYVKDGTVKEFALWNPADLGYLAAYATKALVDGDITGAEGDKFTAGDLGEFTVGENGSVLLGDPYRFNAENIDDFDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6T4</accession>
    <name>A0A0Q8V6T4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11620</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894964.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53034">
        <property type="protein sequence ID" value="KRC53034"/>
        <property type="gene ID" value="ASE19_11620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1513226at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014976">
        <property type="entry name" value="Cap4_SAVED"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08878">
        <property type="entry name" value="Cap4_SAVED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="32675" checksum="7CC2FDF8A6B1A320" modified="2016-01-20" version="1">MGDASTTLSVLVHDFACSPSVTGLCAGYEDGTWRLEHLARSIVKAIPEFALTYSELQHLDGDTAVEMLGRAVRSLYSTDKYEKRGEFGEVLLHLVLREVFSTIPAISKIYFQDNDNHVVKGFDAVHVVASSDDLELWLGEVKFYDNRSSAVSAVKAELHQHTDGNYLRREFAAITGKIDPAWPHGDRLKLLLHENTSLDDVFDRIVIPVLLTYDSPVVADRIVQLSTATDRGKSTASRYAEDFEKEIRDGLSTFAEGIPTGVLIRLILVPLHQKKALVTELHTRLKSIQRATQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6U8</accession>
    <name>A0A0Q8V6U8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HAD family hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17260</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50336">
        <property type="protein sequence ID" value="KRC50336"/>
        <property type="gene ID" value="ASE19_17260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006357">
        <property type="entry name" value="HAD-SF_hydro_IIA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13344">
        <property type="entry name" value="Hydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01460">
        <property type="entry name" value="HAD-SF-IIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="340" mass="35057" checksum="2B7E29BB23D9AD6B" modified="2016-01-20" version="1">MLLTSLVPLTDAYDLAMLDLDGVVYIGADAVPGAARNIANARAAGMRVAFITNNASRPPEAVAAHLTELGVEARVEDVVTSAQAAARLAAERWGPGARLVCLGAAGLEAALAEAGLVAVGAEDDAVGVVTGYGPEVPWKDVMRVAVRVRAGLPWIASNTDRTIPTAFGVAPGHGVMVDMLERFTGVRPVVAGKPERPLLDETVRRVGGSRPLMVGDRLDTDIEGARNAGVDSLLVLTGVTGLPELVAARPELRPSYLAGDLGGLVGAHAEPVRDGGEWQLGGWRARVERGALRVDRASGDGSSDDGWRVAAAAAWEHLDATGTVVDVTAATLPTPGASAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Z5</accession>
    <name>A0A0Q8V6Z5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">TetR_C_33 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11515</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53014">
        <property type="protein sequence ID" value="KRC53014"/>
        <property type="gene ID" value="ASE19_11515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1570162at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025996">
        <property type="entry name" value="TetR_C_WHG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13305">
        <property type="entry name" value="TetR_C_33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="TetR_C_33" evidence="4">
        <location>
            <begin position="94"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="250" mass="28312" checksum="9FFAD15F137A8C3B" modified="2016-01-20" version="1">MRAPATRRERQREATYDEIVTVSAQLLAEGADLSLRAVAGRMGMTAPALYRYVANYQQLVDLVAFELDKAATAEWAAAAERFPEDDPAARLTVACVRFRNWALTKPREFALVFANPIAEADTQRRELLTVSTSGHYFTDLLWQIWEQRRFPFPALDELVPVIRDAVLDPLIPAKAEHIPTEDRGLLWIYMRSWSALYGVVTLESTGHCDPRVIESGQLFRATLLDWLGPLGLDEDRERLTVILDEELAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V730</accession>
    <name>A0A0Q8V730_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_11700</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894976.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53046">
        <property type="protein sequence ID" value="KRC53046"/>
        <property type="gene ID" value="ASE19_11700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1570162at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025996">
        <property type="entry name" value="TetR_C_WHG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13305">
        <property type="entry name" value="TetR_C_33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="5">
        <location>
            <begin position="4"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="195" mass="21029" checksum="56F16569B3A6FB47" modified="2016-01-20" version="1">MRQADLRQRLLRAAEQEIATSGPAKASLRGIARRVGVSHQATAHHFDDRAGLFTALAVEGFELLLEETVAAIEAVGTEGIASGSQVAASGAAYVAFAMRHPTMFDVMFRPELLHVDDPRLVDVRRLHRELLVQIIATAQAEGWGTAVPTEELATVGWATVHGLAVLQRDAQLVEVMPEIDPGLLQRVARSLDALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7D4</accession>
    <name>A0A0Q8V7D4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13045</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895740.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53278">
        <property type="protein sequence ID" value="KRC53278"/>
        <property type="gene ID" value="ASE19_13045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1745184at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="14"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="202" mass="22042" checksum="3BB170DE848B07D0" modified="2016-01-20" version="1">MSSTTRVPQEERTRAMRLRLMEATVELLVEKGFSGTTTTLVSERAGVSRGAQLHHFPTKNDLVVAAVAHLTEIRGSDLEAAVSRLPDGAGRTEAVVQMLGDHFASPVFTAALELWVAARTDAALLEAVAPLEQRVGRETHRLTVELLGADESRPGVRELMQATLDLVRGLGLANTLGDDARRRRKILKEWSRSLDAALKEKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7G3</accession>
    <name>A0A0Q8V7G3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12420</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895103.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53176">
        <property type="protein sequence ID" value="KRC53176"/>
        <property type="gene ID" value="ASE19_12420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="966287at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359776" evidence="1">
        <location>
            <begin position="25"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="388" mass="39739" checksum="67D42CD6C33CD10A" modified="2016-01-20" version="1">MNTTLARLGTAAVAVALAAAGAPAVVGSPGGQSPPARTVAELDGPRGVDALGRGRTLVTETGGDFSLVVERRGQPALVVPLGNLATDFPPAIAQGRHGTVFLLTGAAGPPPEEAASTLRSTAAAAPSEPAAGATLFKWRRGWSAPRPVADIAAYQATDPDPDDQEGFPEDSNPFGLAALRDGTVLVADAAGNDLLRVWPDGHIRTVARLAPRRVEVPAGLPDVPPEEGGPLPPAGTPILAEAVATSVTVGADGAWYVGELRGFPATPGTSQVWRVRPGTTNATCDPEHPRRGPCRRHADGLTSIIDLAADRHGVLALELSKASWLAFELGLPGAEAGGLFRLVRRHGHTWRKELLAGQLVLPGGVDAAGGAVYVAGPLFGPGALLRTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7G7</accession>
    <name>A0A0Q8V7G7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Band 7 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_13210</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the band 7/mec-2 family. Flotillin subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895770.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53308">
        <property type="protein sequence ID" value="KRC53308"/>
        <property type="gene ID" value="ASE19_13210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="534274at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031905">
        <property type="entry name" value="Flotillin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027705">
        <property type="entry name" value="Flotillin_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13806">
        <property type="entry name" value="PTHR13806"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15975">
        <property type="entry name" value="Flot"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="domain" description="PHB" evidence="5">
        <location>
            <begin position="35"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="207"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="505" mass="52885" checksum="E350304D052EFD0B" modified="2016-01-20" version="1">MNTAVWVPIAGIVVLLVLLVLLVTSRYKVAGPNQAFIVTGRKGKAVINPETGELTTDLSGQKVVLGGGVFVVPFVQKLATMDLSSRRISVQIRGAVSGQGIKLNLDGVAIVKVGGNADQIRLGAQRFLSQQGDIETFTQEVLAGALRSIVGGLTVEQIIRDRAAFAQRVADESESSLTGQGLILDAFQIQDVTDDGTYLADLGRPEAARIQQAAAIAEANARQAAEQAQIAAEQEIAVAQRTLALKQAEIKAETDAAAAQAAAAGPLAQAERDQAIFAEQEKVAVQQAALTERQLETQVRKPADAERYRVEQEAEARRTAEIAAADARKAATIAAAQAKAEETKLSGEAEKGRRAALAEAEAIEGIKRGEAEKGRRLAEADATRAEGEAQAAATLAIGQAEAEAMDKRAEAFAHYNDAAVLQMLIEVLPQIAKEVASPIAAIDQLTVLSTDGASALPKQVTDNVTQTLQMLKTATGLDLEALIKKSVGNATDGLTPPALDGSATS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7K1</accession>
    <name>A0A0Q8V7K1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_12640</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53206">
        <property type="protein sequence ID" value="KRC53206"/>
        <property type="gene ID" value="ASE19_12640"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="24"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="168"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="192"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="252"/>
            <end position="464"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="469" mass="50920" checksum="21EA330037D94FFA" modified="2016-01-20" version="1">MTASLPWPGSDGRWHYRRSLASRVIWLTTMAVGMSVALVAVGAYITARVQMQDTLDNALVDRAEQAARSDTLINAGSQGIPSWALGAGEMRIAFLDYEGTPAILDRGPTIDFGRPELQVAQGKEKRSLRTIAIAGERYRVVAVPTQRDGIALVIAQPLEDQDRTLARLGWVTVAFGAFGVLAAGLAGWTVATNGLRPVRRLTASVEEIARTEDFTPLPVEGDDEIARLATAFNHMLLALDASRTRQRQLVADASHELRTPLTALRTNVELLTMSARGDAAASLPADARDELLDDVQAQIQELTQLIGDLTSLARDEPIRVQVEPVDLADVVDHAVQRVRRRAPGLTFEVFTRPWWVIGEDAELERAVTNLLDNAAKWSPEGGLVTVRLSDGVLTVDDQGPGIAASDRTRIFDRFWRSPDARTMPGSGLGLAIVRQVAERHSGSVHATENASGGARLVLRLPGRENTPHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V862</accession>
    <name>A0A0Q8V862_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">acVLRF1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15985</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893581.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50114">
        <property type="protein sequence ID" value="KRC50114"/>
        <property type="gene ID" value="ASE19_15985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1868138at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042226">
        <property type="entry name" value="eFR1_2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040783">
        <property type="entry name" value="VLRF1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18859">
        <property type="entry name" value="acVLRF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="acVLRF1" evidence="1">
        <location>
            <begin position="72"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="21357" checksum="604106B9B69DDA06" modified="2016-01-20" version="1">MPEVLVPTARWARWLANFSASHGEFSLEVADGALLGTAGDGSRFAARLPFSLGYDGAATADELAAAAVAPPAWGVLLVRKGGFAVARVEQGVVVASKTGQRHVQGRTKAGGQSQQRFARRRANQARDAYEAAADHAARVLGDVGVAVAGGDRTAVAEVLADRRLGGIDVVGPWFAVPDPRRAVLDQVVRDAQALVVDVENAATAPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8C3</accession>
    <name>A0A0Q8V8C3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14080</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897041.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53462">
        <property type="protein sequence ID" value="KRC53462"/>
        <property type="gene ID" value="ASE19_14080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1538337at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="22190" checksum="BD262E7603DBC914" modified="2016-01-20" version="1">MHDDGARLALWLEELGLADQLAGAGLPTFDRDCSGVVRWRDPGTRTPLTADQVADLDRLLRQDGEDPAHAVPLALVQLRRRAQVRAALLASPAHTYASLAALRGASENATRFAVHKAAERRALLVVAHDGGTLVPAFQLDEAGELREELGPVLEPLLAAQMDPWQVWAWLTQPAGLLGGQVPHEAARDAEEAAIVRHAAVRLAERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8F7</accession>
    <name>A0A0Q8V8F7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_14245</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897009.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53494">
        <property type="protein sequence ID" value="KRC53494"/>
        <property type="gene ID" value="ASE19_14245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1181903at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="3"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="39"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="224" mass="23720" checksum="720419C41B0CAB78" modified="2016-01-20" version="1">MSLRLENISVAVPDGATERVLLDGVDLDVGPGEVVAVTGASGSGKSTLVAVAGLLRQPDGGRVTIGGTDATALKDRRRVRLRRDAVGIVYQSSNLLPALTAREQVAILAHISGRRDAAAKDRAIELLTRVGLEDRLDARPAQLSGGERQRVAIARALMNEPVVVLADEPTASLDPELGELVMQLLIDEARRLGAATVVVTHDPDQAGRADRHLHLHRGEVAART</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8R6</accession>
    <name>A0A0Q8V8R6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13480</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895854.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53674">
        <property type="protein sequence ID" value="KRC53674"/>
        <property type="gene ID" value="ASE19_13480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1719611at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024047">
        <property type="entry name" value="MM3350-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012912">
        <property type="entry name" value="Plasmid_pRiA4b_Orf3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41878">
        <property type="entry name" value="PTHR41878"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07929">
        <property type="entry name" value="PRiA4_ORF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159941">
        <property type="entry name" value="SSF159941"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="472" mass="51684" checksum="0ADB1107304FB01B" modified="2016-01-20" version="1">MAGATPEEGKALLDALMNGQVTSIFEKLKRDERPALLPVPERVRGFRVRLDLHGAKPPIWRRLELPGDLTLPQVHVAIQAAMGWYDSHLHRFRMSNDHRSAHFATEFDLDEGDEGMPEADVRLDQLLAAKGDELWYEYDFGDGWDHKLVVEAVLDDPPATVRCTSGRMACPPEDCGGIWGYGEIAAWVRSGYDDALLPQSFEDAEHGRDWLPVEWHPDNFDLDEVNESLAMATAEPAGVGGELAELADRLERRGITALREVLGRPLSHGSVDIGDAQAASLTETYRTFLDIVGDGVALTAAGYLRPAVVEEIATRTGIAEWWIGKANREDLTHPVAAIRDTARALGLVSVRKGQLTPTAAARRCAGDPQALLAHIVGRLPLGTKDFERQAGWMVLAVAGSGAPVEHWRDETADLLYDLGWSHGRDRLTPPPPRSPTLDVLQQLAGASRARWGKLKGTDFAVAAVARAAIRRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8W8</accession>
    <name>A0A0Q8V8W8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895147.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53595">
        <property type="protein sequence ID" value="KRC53595"/>
        <property type="gene ID" value="ASE19_09295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2007051at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009384">
        <property type="entry name" value="SwrD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39185">
        <property type="entry name" value="PTHR39185"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06289">
        <property type="entry name" value="FlbD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="103" mass="11013" checksum="764895F137188A6C" modified="2016-01-20" version="1">MISLTRLSGTTFLLNADLVERVDCTPDTVVTLVDGTKYLVSESLDEVLAAVVDYRASIVARAALPDAATLPPVRARATRLSAVPLPDRGSPRRGPDRQRGVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA04</accession>
    <name>A0A0Q8VA04_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07540</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895356.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53924">
        <property type="protein sequence ID" value="KRC53924"/>
        <property type="gene ID" value="ASE19_07540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1302613at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="295"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="356" mass="37475" checksum="725D7BEC1DD2DB42" modified="2016-01-20" version="1">MRRVVPSWSRRRWIAVGAAVTVLVGALVVVWVVRDDDRTRLDRALTLAPESTARYSWTDWAGVREDLGADLSASSAGDEVADFLLQAYDHDLSGTTALDESAPVIQDRLGFSPATIDWELFAQGEQGAIVIMGLPDGYDVEGLRDRLRAAGFEEPDKAGGVWFGGADLISKLGENVSPELGALMIDQDAHVLYGSDDVAYLEERADTARGDRDDAVSGAAGAIGSALSGVVYTGDHACTELSMIEADPADRTRADELVRDAGGVHPLTGFAMGVRPGGVVRVAMELDTDEQARADADSRSQLAAGPAPGQGGTFPERFTLGKVVADGTLLTLDLTPVDGTAVLSDLSDGPVLFASC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA32</accession>
    <name>A0A0Q8VA32_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aldehyde dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_06710</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3 6">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54181">
        <property type="protein sequence ID" value="KRC54181"/>
        <property type="gene ID" value="ASE19_06710"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006081">
        <property type="term" value="P:cellular aldehyde metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012394">
        <property type="entry name" value="Aldehyde_DH_NAD(P)"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43570">
        <property type="entry name" value="PTHR43570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036492">
        <property type="entry name" value="ALDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="7">
        <location>
            <begin position="13"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="active site" evidence="4 5">
        <location>
            <position position="213"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR036492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR036492-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC54181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="458" mass="50086" checksum="E05812EBCB9C1EA4" modified="2016-01-20" version="1">MSAQEPPAKTVARLRDTFATGRTRGFAWRERQLKRFLEMLEAEEAAIAKALAEDLDRFPGAAWSADVATTRIEVRDSLKNFRKWARRERHLLPFATWPSRGFIEREPLGTVLVIGAWNFPFYLTLGPLAGALAAGNTVVVKPSELAPASSRTIKELLEKYLDPDAVAVVEGGVEVTQELLAQGFDHCLFTGSPQTGKKIMEAAAATLTPVTLELGGKSPAIVTANADLDVAARRIVWSKLTNSGQTCITTDYVIVERAVQKPFLDKLLATVKSFTEDRPDGQPIINRRQYERLVGLLRDDHGGTVVTGGGTDEERCLIDQTVILDPSAESAVMSDEIFGPILPVITVDSLNAAIAYVKRGPKPLAAYLFSASRHDHEQVVEQLSAGGIVINHALLHCLSPQLPFGGVGNSGMGSYHGKWGFDTFSHLKPVVRTWTRPDVPLLYPPHTEAKARIIRKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAD6</accession>
    <name>A0A0Q8VAD6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_08410</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895507.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54075">
        <property type="protein sequence ID" value="KRC54075"/>
        <property type="gene ID" value="ASE19_08410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="357522at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025878">
        <property type="entry name" value="Acyl-CoA_dh-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020953">
        <property type="entry name" value="Acyl-CoA_DH_N_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12806">
        <property type="entry name" value="Acyl-CoA_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12418">
        <property type="entry name" value="AcylCoA_DH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AcylCoA_DH_N" evidence="9">
        <location>
            <begin position="9"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="38"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="162"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="292"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_C" evidence="10">
        <location>
            <begin position="475"/>
            <end position="593"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF12806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC54075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="598" mass="64452" checksum="D08200BEC4924F65" modified="2016-01-20" version="1">MSSNLLSARNVSFLLHEWLDVSELSLRERFAEHSRETYDALLELCEQLATDHFAPHFRKSDENEPSFDGTTVTVIPEVGEALRRFAEMDGFALGADAEAGGLQLPSTVGTAAATWFTAANIGTICYAFLTQANAGLLQEHASAEIRERYVPPMLEGRWFGTMAMSEAHAGSSLGDITTRAVPQDDGSYRIFGSKMWISGGDHELADNIVHLVLARLPEAPAGTKGISLFVVPKFVVEADGSLGEHNDVAIAGINHKLGSRGTVNTAPVFGDGAFMPGGQAGAIGHLVGEPHKGLKYMFHMMNAARLAVGTAATGTAYAAYLKSLEYARERPQGRDVATTDQAAPQVAIIEHTDVRRMLLAQKAYVEGALALTLYCARQLDEERSAPTEEERAEAAKVLGVLTPIVKSWPSQWGQESTSLAIQVLGGAGYTRDHDVEQHWRDQRLNPIHEGTHGIQAMDLLGRKVLLDGGAGLMALAARIEAAIARAHGVGGRCSAWGDQLKAQLDRFGEVTFGLAGLGEPETILANATAYLEAAGHLVVAWLWLEQALVAEGNEGDFYDGKRQAAAYFFATELPKITPMLDLLASGDLTSLEMRESWF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAI5</accession>
    <name>A0A0Q8VAI5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ring-hydroxylating dioxygenase subunit beta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ring-hydroxylating dioxygenase beta subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895555.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54123">
        <property type="protein sequence ID" value="KRC54123"/>
        <property type="gene ID" value="ASE19_08700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1736098at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006725">
        <property type="term" value="P:cellular aromatic compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071704">
        <property type="term" value="P:organic substance metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00667">
        <property type="entry name" value="ring_hydroxylating_dioxygenases_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000391">
        <property type="entry name" value="Rng_hydr_dOase-bsu"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41534">
        <property type="entry name" value="PTHR41534"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00866">
        <property type="entry name" value="Ring_hydroxyl_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="20782" checksum="E20CA0EE7C35EC36" modified="2016-01-20" version="1">MTLDLTELPPRPDTAGELVDVPHGWEVREVEQFLYKEARLADENDYDGWEALWTDDALYWVPVDGEGDHPRAKVSIIFDNRSRISTRMKQVRTGKRYAQAPPSNLRRIIGNVELLGGRANAAGSVDLEIGANFIAFESRERGNTIWGGRTTYRLRKVDGAIRLVYKKVVLADNERAVPTLGFLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAJ0</accession>
    <name>A0A0Q8VAJ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08560</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895532.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54100">
        <property type="protein sequence ID" value="KRC54100"/>
        <property type="gene ID" value="ASE19_08560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="170"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="210"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="252"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="279" mass="29062" checksum="7684F21F6279CFA6" modified="2016-01-20" version="1">MSSVAPKLEAIRRAPLRALDSIGTQGLFYARVLGGIPRALRRHPGEIVKLIAELGTGTGALALVGGSVVIVASITFFAGAVAAAQGFESSSSLGVGSLSPLLAAFFTARLSTPLLAGVALSVTLGAATTSQLGAMRISEEIDAIEVMAIPSLPYLATTRVTAGMIVITPLYVFATLGGFLADYLLLVFFYDVGGGNFSHYFFLYLHPMDIVFSYVQVLGMVIVVMLVHTFYGYNATGGPAGVGEAVGRSVRASLSGVMIVNLLIAMAIYSNFNTFHLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAK4</accession>
    <name>A0A0Q8VAK4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_09400</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894581.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52643">
        <property type="protein sequence ID" value="KRC52643"/>
        <property type="gene ID" value="ASE19_09400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="149255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="183"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="207"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="233"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="275"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="303"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="367"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="509"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="542"/>
            <end position="560"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="580"/>
            <end position="602"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="628"/>
            <end position="648"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="654"/>
            <end position="673"/>
        </location>
    </feature>
    <feature type="domain" description="MMPL" evidence="7">
        <location>
            <begin position="44"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="domain" description="MMPL" evidence="7">
        <location>
            <begin position="495"/>
            <end position="690"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF03176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="704" mass="74581" checksum="997FCD4599D2711E" modified="2016-01-20" version="1">MLRRIADLTWRRPRSILLGALLFAAVAGFFGHDVEHHLKAAGFTDPDSESERAAEIVHDALGHGAEPGLVVLIRSREGGALDLADPVVRDEVERLAEALRGSRYVGNVPDPFETPGLVAGDRASVVLPAQLSTTDLEDEGGLADESVRERVRSDLLDVGYAGFAPGFNEVNDQTRKDLTRAELIAFPLLAILLLVVFRSVVAAMVPLLLGVLSILGTLLALRIMAALVDTSLFALNIATALSLGLAVDYALLLVPRHREEVQVHGHTLEAHRRAVATAGRASLFSGLTVAAAMSALMLMPQRFLYSIGAAGAVVGVLSAVMAVVVVPALLAALGPRIDLWSVRRGPALAGTSDRWFRLAHAVMRRPVLFAVGTTVLLLALAAPLLATTLTGPSAQAVPPGQQSYEVNRYLEDHYGRAFTEAASLVVTGEVSDDALASYARRIGDVPGVEAVQPFARVGADVASTTAVLDAPALDGRAQDAIEGVRGIDGPGELLVSGNTARFMDEKSSLLGHAPLVVALIVALIVVLIFLLTGSVLLPLKTLLMNALTLAAVLGILVIVFERKVGTQLLDYPGPYAVEVTSLVFLFAVTFALATDYAVLVMARIKELHDDGLPNEEAVAQGVARTGRIISAAAVMIAVVFLAFAVSPVFFMKQIAVAMALGVLIDATIVRALLVPALMRLLGEANWWAPGPLRRLQRRIGIRDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAN3</accession>
    <name>A0A0Q8VAN3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09585</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917953.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52675">
        <property type="protein sequence ID" value="KRC52675"/>
        <property type="gene ID" value="ASE19_09585"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="115"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="219"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="254"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="285"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="310"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="343"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="372"/>
            <end position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="403" mass="41290" checksum="03F299426FE2A804" modified="2016-01-20" version="1">MVAVVHAHPSGATTPSSQSRRRAGAGLTVAVLLVAFNLRIAVTSLGALLDHLGDLGVSATTQGVLTSLPVLCFALVGATAMVVTRRFGVDRRLALALVVLTLGLVLRVLDGTPALLVGTFVSCSGIALGNVLIPAIVKEHFPGKVGTMTGAYTAVLSLGSAAGAALTVPLTNATGTWRLGLGLWAAVAVLAVVAWAPFARGAVERRSTERGTPLWRNRTAWAVTVLFGTQSTFAYVMMSWLPSLYADAGFSDETAGLLLAVSITLGVPFFFLAPRLAGRMHQQGHLVAACTVLTMVGWAGLGLAPEGGAWLWAALLGAGGAVFPIVLLCFALRTTSSVDTAALSTMAQSVGYLLAAGGPFLVGSLHDATDSWALPCTLLVGLGFVQVTAGYLAGRPVKIGAAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAR0</accession>
    <name>A0A0Q8VAR0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SnoaL-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09760</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894645.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52707">
        <property type="protein sequence ID" value="KRC52707"/>
        <property type="gene ID" value="ASE19_09760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1644255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12680">
        <property type="entry name" value="SnoaL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="9"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="122" mass="13260" checksum="012154EDBF4F1281" modified="2016-01-20" version="1">MTIDIPTAVARYLDLVARATSGDQVAALYSPGATVEDPVGSTVLQGSRQIAAFYDALTSRERSAELLSVRVAGNEAAFHFRFRSGDGERTSVIEPIDVMTFDEDGLITSMRAFWSRSDVRLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBK0</accession>
    <name>A0A0Q8VBK0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15275</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896508.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51442">
        <property type="protein sequence ID" value="KRC51442"/>
        <property type="gene ID" value="ASE19_15275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013107">
        <property type="entry name" value="Acyl-CoA_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08028">
        <property type="entry name" value="Acyl-CoA_dh_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="1">
        <location>
            <begin position="31"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_2" evidence="2">
        <location>
            <begin position="247"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="415" mass="44745" checksum="594595B28850B7BD" modified="2016-01-20" version="1">MSITDTRSPLEELRATYGPVFDEIGLGALQRELDDVLPDQEVRRLKERGFGALRVPTRYGGRGASIPELTQLWIDLAAADSNLPQALRGHAALVEDRLWQHAQGRDQRVWFDRFAAGEIAGNAWSEVGATAIDSQQTVLAAQPDGSYRLTGSKFYTTGTIYAEWADVYARIERDGAGLGQEPEFAIAIVDTREPEVIVTDDWDGFGQRGTGSGTTTFDGAVVAARDVLPFGERFPYQTALYQLNLLAVLTGIGRAALTDFVGHVRDRERNYSHANAARVRDDPQVLARIGEASAAVYAAEAATLRVAEAIQEVADLAPVAAGAADRVAAANERAEVESSAAQVVVTSLVLDLTSDLFDTLGASGTSLSKGLDRHWRNARTVSSHNPRILKARVVGAHLVNGTPPPYAWAIGRTAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCU6</accession>
    <name>A0A0Q8VCU6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Translation factor Sua5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06410</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894470.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55061">
        <property type="protein sequence ID" value="KRC55061"/>
        <property type="gene ID" value="ASE19_06410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1913202at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003725">
        <property type="term" value="F:double-stranded RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017945">
        <property type="entry name" value="DHBP_synth_RibB-like_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006070">
        <property type="entry name" value="YrdC-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01300">
        <property type="entry name" value="Sua5_yciO_yrdC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55821">
        <property type="entry name" value="SSF55821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00057">
        <property type="entry name" value="TIGR00057"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51163">
        <property type="entry name" value="YRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YrdC-like" evidence="1">
        <location>
            <begin position="14"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="205" mass="22900" checksum="34F3F581A3A437FD" modified="2016-01-20" version="1">MARYLDVHPDNPQPRLLQQIVEALNDDALIAYPTDSGYALGCRIGNRDGRDRILRIRGLDDKHHFTLVCRDFSQLGQMVHVDNSAFRAIRAATPGPYTFILPAMPEVPKRLLHPKKKTVGVRIPDHVFVQALLEELGEPLLTSTLILPGETEPRTMGWEIKEDLDHEVDIVVEAGETPAEPTTVVDWSDGAPEVIRRGAGDPDRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDI4</accession>
    <name>A0A0Q8VDI4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Sugar ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_06380</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55164">
        <property type="protein sequence ID" value="KRC55164"/>
        <property type="gene ID" value="ASE19_06380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1510342at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="72"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="109"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="141"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="185"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="245"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="73"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="281" mass="30749" checksum="D468BE1C048F8F6E" modified="2016-01-20" version="1">MMARRTSLPVRIGADLVGIVVFLACVFPVYWMVSRSFLPRNRIKGEDPVFVPTGGTLDNYRRVFSDGSFTDALVTSLTVTLLTVGVALLFAFLAAVAVSRFRFRGRRTFILTLLVIQMIPAEALFISQYKMLDGMSLLNSVIGLTIVYVASVLPFTVWTLRGFVDGVPRELEEAAMMDGCSRTGAFFKVTLPLLAPGLVATGVFAFIQAWNEFTLAVVVMTDPDKKTLPVWLVAFTDSRSRGVDWGAIMASSTLITIPVIIFFLVVQRRMVSGITAGAVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDQ3</accession>
    <name>A0A0Q8VDQ3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NADH-quinone oxidoreductase subunit B</fullName>
            <ecNumber evidence="1">7.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">NADH dehydrogenase I subunit B</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">NDH-1 subunit B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">nuoB</name>
        <name evidence="4" type="ORF">ASE19_10055</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="1">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">NDH-1 is composed of 14 different subunits. Subunits NuoB, C, D, E, F, and G constitute the peripheral sector of the complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the complex I 20 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894687.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52753">
        <property type="protein sequence ID" value="KRC52753"/>
        <property type="gene ID" value="ASE19_10055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1904620at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01356">
        <property type="entry name" value="NDH1_NuoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006137">
        <property type="entry name" value="NADH_UbQ_OxRdtase-like_20kDa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006138">
        <property type="entry name" value="NADH_UQ_OxRdtase_20Kd_su"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01058">
        <property type="entry name" value="Oxidored_q6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01957">
        <property type="entry name" value="nuoB_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01150">
        <property type="entry name" value="COMPLEX1_20K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1 2" id="KW-0408">Iron</keyword>
    <keyword evidence="1 2" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="1 2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 2" id="KW-0520">NAD</keyword>
    <keyword evidence="1" id="KW-0874">Quinone</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1278">Translocase</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Oxidored_q6" evidence="3">
        <location>
            <begin position="37"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="185" mass="20325" checksum="0AC0743104BD44CF" modified="2016-01-20" version="1">MGIEEKLPEGVLLSTVEGLAGYMRKASFWPATFGLACCAIEMMTSGGPKYDLARFGMEVFRASPRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNNYAIVQGVDHVVPVDMYLPGCPPRPEMLIDAILKLHDKVQHDTPFGKNREAQIRELEAEALIALPTGDQRGLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VED3</accession>
    <name>A0A0Q8VED3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07805</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53971">
        <property type="protein sequence ID" value="KRC53971"/>
        <property type="gene ID" value="ASE19_07805"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.101.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015020">
        <property type="entry name" value="DUF1906"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036365">
        <property type="entry name" value="PGBD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036366">
        <property type="entry name" value="PGBDSf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08924">
        <property type="entry name" value="DUF1906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47090">
        <property type="entry name" value="SSF47090"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359957" evidence="1">
        <location>
            <begin position="25"/>
            <end position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="454" mass="49190" checksum="0AE0EA5B1D2B2AE6" modified="2016-01-20" version="1">MSALLAAVLLVALLAPLRNGGEGTDETGVDLLAATTNRPTPGSFTGYGFDQCNAPTQSAMDSWTEHSPFSAVGIYISGNSRACREQRNLTPTWVARQLSRGWHLLPITLGPQASCSTRYPKYGRTIDPKINPDPTNSYAKARVQARTEADRAVTAAKALGIVAKSTLFYDLEAFDLGNSTCKASALWFVHAWTNRLHELGYKSGFYSSAGSGIKMLDEAHRNTRSTLTLPDMLWIARWDGKANTAVSSEYLSATAWLPGGRVKQYLGGHNETWGGVTINIDRNFLDIGRGSVASAETHCGGVPVDLGSYMVLRTPTATYTPLPGRVRALQCLLTEKKLYAGRIHGRYDLATRRAAQAWQRSKGFPTSSTWGRRDWVSLTSAGTNPVLKFGSYGPAVRRAQRAMNAAMPRAGVEITGVFDAATAAHAGAYRRQIGMSSYNIVNSATWARLQAGFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFW5</accession>
    <name>A0A0Q8VFW5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10675</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894799.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52866">
        <property type="protein sequence ID" value="KRC52866"/>
        <property type="gene ID" value="ASE19_10675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1817663at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="99" mass="11110" checksum="5B5678B3ED29043D" modified="2016-01-20" version="1">MTPDEVDAFARSLPGCKRKGTATHPAWYVDDRLVARLVDAGELVVRAGFDERERMVAEHPETFGVPPRYERHLKVQVLLSGDGAAIRAAIRGAWELQRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGN0</accession>
    <name>A0A0Q8VGN0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">GSDH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01930</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892636.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56618">
        <property type="protein sequence ID" value="KRC56618"/>
        <property type="gene ID" value="ASE19_01930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="227901at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012938">
        <property type="entry name" value="Glc/Sorbosone_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011041">
        <property type="entry name" value="Quinoprot_gluc/sorb_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07995">
        <property type="entry name" value="GSDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50952">
        <property type="entry name" value="SSF50952"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360020" description="GSDH domain-containing protein" evidence="1">
        <location>
            <begin position="28"/>
            <end position="987"/>
        </location>
    </feature>
    <feature type="domain" description="GSDH" evidence="2">
        <location>
            <begin position="311"/>
            <end position="689"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="987" mass="102776" checksum="DB26D85FE537DA58" modified="2016-01-20" version="1">MWSRSRFLLLALVVALLGLGPVPTAPASAVAPALTVAPRQPVVGDTVRFRATLPTRVRRPVQLQRSTAGRWTTVARGWATRAGRVDVGARVTSGRTTWRVVAQPYRGRRVVTTRAAVVTAATEGVTLSTSIVDGRGRARVVASHPVAGRPVQLQARTGAGAWTSVATGRSTTSSATVLTSELAAVQGRSLRAVLPAYGGRAAVASAVQEPPTVVVGAVADGETASATATTTGTVQAVRFFLDGVLLATDTRAPWTASWSPRVGRHDVVARAIGPLDSALSDAVDVTTTAAPVTADTGVAEGFAIEVVQDGLDLPTSAATLPSGAVLVTEKAGVVQVVEPDDEGGWSLPRPVLDLREEVDDAGDAGLIGIAVDPDAATNGHVYLSYVRDDGTGTTSGAGDRRTQRVVRYTWDGAALGSPHVLLGAGCAPDDPADTDGCLPLIGEAHTVGDLAFDDAGRLLVGVGDGSLYYTSDGLPGRLETLRAQDPDVLAGKVLRIDPATGEGVPGNPSYDGDGSTNASRVLALGLRNPFRFTVHDGHLVIGEVGEGATEEIDLLELDDADEQDEVANYGWPCLEGTAATPLGDVADEDNAWHACAQVRTGDAATPPAYTYAHTGAGGSISGGVFLTSESYPAAVRDRYVFGDYAQGFLRTVEVGHGGSVSDPALLADASAAAGPVKFLTGPDGLVWSVSITTGALRRIRWTGTTPTDQCAVGTFRRTFHDLDGPDSPFDAEVEEGPYSWLQPYASVQLPAETLAPATCEPSIHLDTDASPWTEDDERAHPADRFGTSWRGRVAMDAGTWRFTVSGSEWVRLWVDDQVVHDFYSNAFWELPLRQHDVVLAPGQHVVRAELVHGDEASARAEVGWERVGGPPTVALQAPANGIVAGDGTVPWQVVVGDPDGDPVEALAANTRLEVDFLHYTGDGFHAHPSSRITGELAGTLAVSDVHAPGSGVVRLRASVVDASGARSVSAPVYVCFPGGAVGPCAER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGY7</accession>
    <name>A0A0Q8VGY7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Long-chain fatty acid--CoA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02660</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892759.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56741">
        <property type="protein sequence ID" value="KRC56741"/>
        <property type="gene ID" value="ASE19_02660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="164380at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="24"/>
            <end position="466"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="595" mass="63668" checksum="A43A3B4890ADAC54" modified="2016-01-20" version="1">MREYSTPQTVTVPTTGNLTDDVVRNAVEAPDAVQFSRADGSGGWSDVTCAAFLAEVTAVAKGLLAAGVEPGDRVALISRTRYEWTLLDYAIWFAGAATVPIYESSSEEQVQWILSDSGARALVVEDATHLARVGAVRAQLPDLAHVWALESGGVDELVRLGAAVPDADLEARRQATGPADLATLIYTSGTTGRPKGCMLTHDNFQNELCVAVAELERLFDAEDASTLLFLPLAHVFARIIQVGCIKSRTRLGHSADIKNLLPQLGTFQPTFILAVPRVFEKVFNTASQRATADGKGKIFDRAAETAIAYSRALDGGRVPVRVRTQHALFSRLVYGKLRTALGGRCEFAVSGGAPLGDRLGHFYRGIGVTVLEGYGLTETTAALTVNLPDAQKVGTVGRPIPGTAVRIADDGELLFKGGQVFTGYWNNPEASAEALQDGWFHTGDVGEVDDEGFVRITGRKKEILVTAGGKNVAPAVLEDRVRASALVSQCLVVGDGQPFIGALVTIDEEAFPAWAEQHGKTGKVADLVDDEDLRAEVQAAIDEANKAVSKAESIRKFTILPADWTEEGGQVTPSLKLKRNVVMRESRDEIAALYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH13</accession>
    <name>A0A0Q8VH13_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04690</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894305.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54777">
        <property type="protein sequence ID" value="KRC54777"/>
        <property type="gene ID" value="ASE19_04690"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2076478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041657">
        <property type="entry name" value="HTH_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010093">
        <property type="entry name" value="SinI_DNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12728">
        <property type="entry name" value="HTH_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01764">
        <property type="entry name" value="excise"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_17" evidence="1">
        <location>
            <begin position="7"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="77" mass="8774" checksum="778A254F6F6DBB60" modified="2016-01-20" version="1">MADNSRFLTLADVAEVLNTSSAQVYALVRRGELPAIKVGGRGQWRVERSRLEDYIAEQYRQTEQYVAEHPFVDTDAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHF3</accession>
    <name>A0A0Q8VHF3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Rhomboid family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_09420</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894585.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52647">
        <property type="protein sequence ID" value="KRC52647"/>
        <property type="gene ID" value="ASE19_09420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2053476at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022764">
        <property type="entry name" value="Peptidase_S54_rhomboid_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035952">
        <property type="entry name" value="Rhomboid-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01694">
        <property type="entry name" value="Rhomboid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144091">
        <property type="entry name" value="SSF144091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="51"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="91"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="115"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="142"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="166"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="Rhomboid" evidence="6">
        <location>
            <begin position="52"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="193" mass="20080" checksum="DA5150A88BD3C324" modified="2016-01-20" version="1">MELKVMDRPGWQVAGVAAVAFVVLLWGIELVDVAASHRLDGWGIRPRSGEGLLGILAAPLLHGGWGHLVANSVPALVLGFLTLATGLARGLAATALIWVVGGFAVWLVAGDHSVHIGASGLIFGWITYLAVQGFVDHQPAEIAIGLVVLVVYGGVLWGVLPGQPGISWQGHLFGAIAGVVAAIVLSERRTARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHH1</accession>
    <name>A0A0Q8VHH1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">HTTM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_02745</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892775.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56756">
        <property type="protein sequence ID" value="KRC56756"/>
        <property type="gene ID" value="ASE19_02745"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008488">
        <property type="term" value="F:gamma-glutamyl carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017187">
        <property type="term" value="P:peptidyl-glutamic acid carboxylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011020">
        <property type="entry name" value="HTTM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007782">
        <property type="entry name" value="VKG_COase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05090">
        <property type="entry name" value="VKG_Carbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00752">
        <property type="entry name" value="HTTM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="58"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="100"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="140"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="179"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="214"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="domain" description="HTTM" evidence="6">
        <location>
            <begin position="4"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="269" mass="29068" checksum="8E38F07816E28C0A" modified="2016-01-20" version="1">MLTSLRVAPRPVALGRVLFAIGALLTCYEGGGFLNHLQKDRITTPVSDWLPQAADVSLAAWFLTMAVACVLLALGILAPLSALTIAAGNVLLMATDQQLYSNHRFFLVVLCLWFAIARADRAWAVRAKVRRDAGDGLVPWWPQLLLVATLSACYLFAGLSKANPEFLSGDLIASLSPDWVPAQATAWLTVPTEIAIGLGLWWRRTRRPALLLGVLLHVSIVALLGAPLVFSAFALLCFASYPLVWTWPTFPAGPEDQAEAAAIQRSNVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHM9</accession>
    <name>A0A0Q8VHM9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AraC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01940</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893049.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57013">
        <property type="protein sequence ID" value="KRC57013"/>
        <property type="gene ID" value="ASE19_01940"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="211"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="312" mass="33919" checksum="E77DA7EC818A0C80" modified="2016-01-20" version="1">MTNVAVIAFDGVAPFELGILCEAFGIDRTDDGVPAIDFAVCAEESRPLRTSMGFTLQAAHGLDRVAEADLVGIPAIKEEGASPAVIQAIRDAYDRGARLLSVCSGSFVLGEAGLLDGRECTTHWMHTERLQERFPEAKVIPEVLYVDAGQVVTGAGSAAGLDAALHIWRQEYGAAVANTIARRAVVPPYRDGGQAQYIARAVPDCDADTLSPLLTWILANLHEDHGVEALAKRAHMSARTFARRFRDETGTTPHTWITRQRVAAAEELLERTDHPVERIAGEVGFGNAATLRHHFVRVRGVSPQNYRRQFAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHV8</accession>
    <name>A0A0Q8VHV8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acyl-phosphate glycerol 3-phosphate acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892753.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56735">
        <property type="protein sequence ID" value="KRC56735"/>
        <property type="gene ID" value="ASE19_02620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1756450at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PlsC" evidence="1">
        <location>
            <begin position="35"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="237" mass="26287" checksum="0B5623F305CDE1E3" modified="2016-01-20" version="1">MFYWFLKFVALGPLLKVIFRPRSEGVENVPATGPAILASNHLSYADWLFMPLVIPRMVRFVAKAEYFTSPGVKGWLQKNFFSGTGNIPIDRTSGDAASGALVSAKRVLAEGELFGIYPEGTRSHDGRLYRGKTGIARLTLETGVPVIPVAVVGTDLVAPPGKKFGRITRPTVRFGKPLDFSRYAGMENDRFILRSITDEIMYEIMRLSQQEYVDMYATRAKAESKKADAGDERKLAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIJ8</accession>
    <name>A0A0Q8VIJ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Inhibition of morphological differentiation protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23995</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HAD-like hydrolase superfamily. SerB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894020.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57386">
        <property type="protein sequence ID" value="KRC57386"/>
        <property type="gene ID" value="ASE19_23995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1472357at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006385">
        <property type="entry name" value="HAD_hydro_SerB1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01490">
        <property type="entry name" value="HAD-SF-IB-hyp1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="243"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="269" mass="29205" checksum="A675C4306AEB23BF" modified="2016-01-20" version="1">MARPGTSLTAAFFDLDKTIIAKSSVLAFSKPFQAGGLISRRAVLRSAYAQFVFMIGGADHDQVEKMRMFMSQLVQGWDVATVREIVADTLHNVVDPLVYDEAVRLIDEHHAAGRDVVIVSTSGSEVVEPIGQLLGADRVVATRLKVENGRYNGEIDYYAYAEEKANAIRALAETEGYDLANSYGYSDSVTDVPMLEAVGHPHAVNPDKELRKIAAARGWPVLVFNRPVELQSRLHLPPPKPTLAALAVGGVVAVGAAVWIGSRRRALEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIZ8</accession>
    <name>A0A0Q8VIZ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12160</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the carbon-nitrogen hydrolase superfamily. NIT1/NIT2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895054.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53127">
        <property type="protein sequence ID" value="KRC53127"/>
        <property type="gene ID" value="ASE19_12160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1650683at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001110">
        <property type="entry name" value="UPF0012_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01227">
        <property type="entry name" value="UPF0012"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CN hydrolase" evidence="2">
        <location>
            <begin position="6"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="263" mass="27810" checksum="4D39BCE47022C72E" modified="2016-01-20" version="1">MTAPTLRIALVQAAAALEPAVNRAALTELVAAAGPDTDLVVLPEAFARDFGEAGSDVSPYAEPLDGPFATAAATAAAEAGTTVVAGMFEEGPVPGRPWNTLVARGASEASYRKVHLYDSFGYRESDRLSPGPLEPVVLDVAGWQVGLMTCYDLRFPELARALVDRGAELLVVPAAWVAGPRKVDHWRTLLTARAIENTVYVAAVGQPAPRYCGHSMVVDPFGDVLVEAGPGAPDVPEVIRATASRVTLDEARRVNPSLVNRRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJH6</accession>
    <name>A0A0Q8VJH6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Chaperone protein DnaJ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">dnaJ</name>
        <name evidence="10" type="ORF">ASE19_23390</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 2 Zn(2+) ions per monomer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="6">The J domain is necessary and sufficient to stimulate DnaK ATPase activity. Zinc center 1 plays an important role in the autonomous, DnaK-independent chaperone activity of DnaJ. Zinc center 2 is essential for interaction with DnaK and for DnaJ activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the DnaJ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893912.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57706">
        <property type="protein sequence ID" value="KRC57706"/>
        <property type="gene ID" value="ASE19_23390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1738789at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031072">
        <property type="term" value="F:heat shock protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009408">
        <property type="term" value="P:response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd10719">
        <property type="entry name" value="DnaJ_zf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01152">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012724">
        <property type="entry name" value="DnaJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002939">
        <property type="entry name" value="DnaJ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018253">
        <property type="entry name" value="DnaJ_domain_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008971">
        <property type="entry name" value="HSP40/DnaJ_pept-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001305">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036410">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01556">
        <property type="entry name" value="DnaJ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00684">
        <property type="entry name" value="DnaJ_CXXCXGXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="SSF46565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49493">
        <property type="entry name" value="SSF49493"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57938">
        <property type="entry name" value="SSF57938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00636">
        <property type="entry name" value="DNAJ_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51188">
        <property type="entry name" value="ZF_CR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 6" id="KW-0235">DNA replication</keyword>
    <keyword evidence="2 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0346">Stress response</keyword>
    <keyword evidence="5 6 7" id="KW-0862">Zinc</keyword>
    <keyword evidence="4 6 7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="J" evidence="8">
        <location>
            <begin position="4"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="domain" description="CR-type" evidence="9">
        <location>
            <begin position="129"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="6">
        <location>
            <begin position="142"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="6">
        <location>
            <begin position="159"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="6">
        <location>
            <begin position="185"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="6">
        <location>
            <begin position="199"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="CR-type" evidence="7">
        <location>
            <begin position="129"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="188"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="202"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC57706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="388" mass="40980" checksum="80D2F5941BB17A46" modified="2016-01-20" version="1">MSQDPYELLGVARDADADTIKKAYRKLARQLHPDVNPDEESQERFKQVTAAYEVLSDPQKRAAFDRGGDAFGGFGGQGAGFSFTDIMDAFFGGQGGGGGGGGRGPRPRVRRGQDALIRIEVDLAEAAFGVARELKVDTAVRCTACDGEGAAPGSHPVPCETCRGAGEVAHVQRSFLGEIRTLRPCAACRGFGSVIPDPCRECAGDGRVRSRRTLTVKIPAGVDTGTRVQLSEQGEVGPGGGPAGDLYVEIQVAPHPTFSRHGNDLHCTVSVPMTAGALGTTISLPTLEADLPDVEESGLETAFDLPIPAGTQSGQEVLLRGRGVPGLRGGRGDLIVNIAVETPTRLDPRQEELLRELAAIRGEEQPTGDVRPAHKSVFGRLRDAFTTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJY5</accession>
    <name>A0A0Q8VJY5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">4-aminobutyrate aminotransferase</fullName>
            <ecNumber evidence="5">2.6.1.19</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13890</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.19" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897072.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53431">
        <property type="protein sequence ID" value="KRC53431"/>
        <property type="gene ID" value="ASE19_13890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1322538at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034386">
        <property type="term" value="F:4-aminobutyrate:2-oxoglutarate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009448">
        <property type="term" value="P:gamma-aminobutyric acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004632">
        <property type="entry name" value="4NH2But_aminotransferase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00700">
        <property type="entry name" value="GABAtrnsam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="445" mass="45852" checksum="63D722E8F7A1687E" modified="2016-01-20" version="1">MPDLTPPAPPQERRLVTAIPGPRSLELQARKEAAVSGGIGVMLPVYAVAAGGGVLVDVDGNSLIDLGSGIAVTTVGNAHPRVAAAVARQVAAFTHTCFMVTPYDGYVEVCEALNRLTPGEHAKRSALFNSGAEAVENAVKIARHATGRDAVVVFDHAYHGRTNLTMAMTAKNMPYKDGFGPFAAEVYRAPMSYPFRDGCDGATAAARAIDVIDKQVGAANLAAVVIEPIQGEGGFVVPADGFLPALAAWCRANGVLFVADEVQTGFARTGELFACDHEGVVPDLIVTAKGIAGGLPLAAVTGRAELMDAPHAGGLGGTYGGNPVACAAALAVVEAIETEDLVARAAGIGARLTARLTALQARDPRIGDVRGRGAMIAVELVRPGTLEPDADLAKRVATAAHAQGLIVLTCGTWGNVLRFLPPLSISDALLDEGFDVLEEIFASLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJZ7</accession>
    <name>A0A0Q8VJZ7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">tRNA-dihydrouridine synthase</fullName>
            <ecNumber evidence="10">1.3.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_23580</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 10">Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a 5,6-dihydrouridine in tRNA + NAD(+) = a uridine in tRNA + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:54452"/>
            <dbReference type="Rhea" id="RHEA-COMP:13339"/>
            <dbReference type="Rhea" id="RHEA-COMP:13887"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 5,6-dihydrouridine in tRNA + NADP(+) = a uridine in tRNA + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:23624"/>
            <dbReference type="Rhea" id="RHEA-COMP:13339"/>
            <dbReference type="Rhea" id="RHEA-COMP:13887"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 10">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the dus family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.-" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893946.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57740">
        <property type="protein sequence ID" value="KRC57740"/>
        <property type="gene ID" value="ASE19_23580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1710586at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017150">
        <property type="term" value="F:tRNA dihydrouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02801">
        <property type="entry name" value="DUS_like_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035587">
        <property type="entry name" value="DUS-like_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001269">
        <property type="entry name" value="DUS_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024036">
        <property type="entry name" value="tRNA-dHydroUridine_Synthase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004652">
        <property type="entry name" value="tRNA_dU_NifR3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018517">
        <property type="entry name" value="tRNA_hU_synthase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01207">
        <property type="entry name" value="Dus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006621">
        <property type="entry name" value="Dus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00737">
        <property type="entry name" value="nifR3_yhdG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01136">
        <property type="entry name" value="UPF0034"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6 10" id="KW-0288">FMN</keyword>
    <keyword evidence="9 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7 10" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="Dus" evidence="12">
        <location>
            <begin position="17"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="11">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00002790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR006621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR006621-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC57740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="380" mass="40544" checksum="B57A421B2E236619" modified="2016-01-20" version="1">MTALQLGSLEVPVPVVLAPMAGITNAAYRRLCAEHGAGLYVCEMITSRGLVEGDDTTKRMLVFDDAEKVRSVQLYGTDPSYVGQATRILCEEYGVAHVDLNFGCPVPKVTRKGGGGALPWKRNLLGRILEEAVAAAAPYGVPVTMKTRKGLDDDHLTYLDAGRIAQESGVAAIALHGRTVAQAYSGEADWDSIAALVDHVDIPVLGNGDIWEAADAVRMMAQTGAAGVVVGRGCLGRPWLFRDLAAAFGEGGPAETTLPTLGEVTAMMRRHAELLCEHMGEERGCKEFRKHVTWYLKGFRAGGELRRSLGLVDSLAALDRMLAELDPTEPFPVSELGAPRGRQGAPRHKVVLPEGWLDDTDGLCEGGSGLLEDVNETTGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL52</accession>
    <name>A0A0Q8VL52_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">5'-nucleotidase</fullName>
            <ecNumber evidence="3">3.1.3.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_05600</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a ribonucleoside 5'-phosphate + H2O = a ribonucleoside + phosphate</text>
            <dbReference type="Rhea" id="RHEA:12484"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18254"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58043"/>
            <dbReference type="EC" id="3.1.3.5"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SurE nucleotidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.5" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894153.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54928">
        <property type="protein sequence ID" value="KRC54928"/>
        <property type="gene ID" value="ASE19_05600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1909278at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106411">
        <property type="term" value="F:XMP 5'-nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1210.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030048">
        <property type="entry name" value="SurE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002828">
        <property type="entry name" value="SurE-like_Pase/nucleotidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036523">
        <property type="entry name" value="SurE-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30457">
        <property type="entry name" value="PTHR30457"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01975">
        <property type="entry name" value="SurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64167">
        <property type="entry name" value="SSF64167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360139" description="5'-nucleotidase" evidence="6">
        <location>
            <begin position="31"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="domain" description="SurE" evidence="7">
        <location>
            <begin position="59"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC54928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="357" mass="35866" checksum="D1D3B616F317BBB0" modified="2016-01-20" version="1">MRVPSLPPLPGRVAAIGVALAAGFAGAVFAAPGSAAPAPRPEVSAATAAAAPALAGLEVLLTNDDSARGLDAGFGTDGKGLYELRRALCNAGADVLVVAPWSQQSGAGARMTSPGFSPVAMTVQAVTPPAAYAGDCGATSTAGAVFGVCVAAAPCTSSTPSGSPADAVNIALSRFAKNFWADGPDLVLSGTNFGQNIGATVNHSGTVGAVVTAHEYDVPAIAFSAEVPRDLAQIPNVPFRATADFAVKLITTLRQRNALTHDLALNVNHPFVGPGETLGKPVRADIGLSSDLGLTFLDDVPATGGTYRLVAGAPAAETRRNADTTALARNDIPVTALDGDWGRAMPLQVSIVLAALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL53</accession>
    <name>A0A0Q8VL53_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hemin receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05885</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894101.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54973">
        <property type="protein sequence ID" value="KRC54973"/>
        <property type="gene ID" value="ASE19_05885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1473468at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360142" evidence="1">
        <location>
            <begin position="32"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="2">
        <location>
            <begin position="106"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="378" mass="39853" checksum="42C58E39CDEB6236" modified="2016-01-20" version="1">MVPRSRPRRAADTLALVLLATALTGCGPVLDGSGNGHGDDGPVTEVPSIADVTPLADPRSWQGEVDINLPEPDIRPVEEDPAPQLPARVTDVQGTRVEVTDVSRILALDVYGTLSQTVFELGLGDNVVGRDVSSAYAEIDDRPLVTQNGHELNAEAILELDPTVLITDTSLGPWDVVLQVREAGIPVVVVDAERNLDNLAPLTQQVADALGVPEQGKVLGRRIVDEAAAVRAEIDRVAPSDVTAKLRMVFLYVRGQANVYYMFGRGSGADALITAAGGYDVSSEIGWNGMKPVNDEGLIKAQPDAILMMDKGLASVGGIDGLLDQFPALAQTPAGENQRVITMDDAQVLSYGPRTADVLNALAIALYAPDSLAAKDAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM26</accession>
    <name>A0A0Q8VM26_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Glutamate dehydrogenase</fullName>
            <ecNumber evidence="2">1.4.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04645</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + L-glutamate + NAD(+) = 2-oxoglutarate + H(+) + NADH + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15133"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.4.1.2"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.1.2" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54770">
        <property type="protein sequence ID" value="KRC54770"/>
        <property type="gene ID" value="ASE19_04645"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004352">
        <property type="term" value="F:glutamate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019551">
        <property type="term" value="P:glutamate catabolic process to 2-oxoglutarate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028971">
        <property type="entry name" value="NAD-GDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007780">
        <property type="entry name" value="NAD_Glu_DH_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43403">
        <property type="entry name" value="PTHR43403"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05088">
        <property type="entry name" value="Bac_GDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036761">
        <property type="entry name" value="GDH_Mll4104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1664" mass="182739" checksum="105D91D5E9476323" modified="2016-01-20" version="1">MSTTTLPPSAPGADRDRIFEQAAAAAGTPKGSGGPPRDALPVMLPAYYRHVATEELAARSDVDVYGAFASHHHLAQERRPGQPKVRVFTPTVAEHGWSAAGHSVVEVVGDDMPFLVDSLTMLLAGLVHDVRTVIHPTFDVRRDDGGHLLSVEPVASGAVTAPEGAVRESWMHIEISRLGSEADGDDHPERVAAACLRVLADVRAAVEDWSGMQAQVSDLIEGLSASPPPLDPEEVRRARELLGWLADEHFTFLGYREYVLEKVEVPGADGSGDVEDVLRPVAGTGLGILREKPDEVDSSVAFSRLPDAVKAKAREKTLLVLAKANSRSTVHRPAYLDYVSVKTFGDDGEVVGERRFLGLLSSAAYTESLLQIPLLREKVAEVLHRSGFDGRSHDGAALLDTLETYPRDELFHTPVDELSPIVEAAMQARERRAVRLFIRRDTYARYLSVLVYLPRDRYNTGVRQRFVQILVDQIGRGRIGPDDVEFNVSINESTTARVHFVVHLPKGELVPDDIDTADLERRLVEASRSWQEDFLQAVIAEYGEEVGALLGRRYVDAFPEAYKEDFSPRTAAVDLGRIEGIHGEEGRDQALYADIDAADGEARLKMFRVGEPLSLSAVLPMLSSMGVEVVDERPYGLMGLERRTHIYDFGLRYGEALPDHARELFADTLRAIWDGYTEVDGFNRLVLRAQLTWRQAMVLRAYAKYMRQGNSPFALDSIEQALVDNVELAGLLVLLFEARFDPTASDGREEREAGLVERIRTALDDVASLDHDRILRSYLTHIRATLRTNYFQVERENSVVEVRGAPATSLETPKQYLSLKLEPSAIPDLPEPRPKFEIFVYSPRVEGVHLRFGAVARGGLRWSDRRDDFRTEILGLVKAQMVKNTVIVPVGAKGGFYAKQLPEPSDREAWLAEGVACYKTFIRGLLDVTDNLVGGETVPPPSVVRHDADDSYLVVAADKGTATFSDIANGVAADYGFWLGDAFASGGSVGYDHKAMGITAKGAWVSVRRHFREMGVDCQNEDFTVVGIGDMSGDVFGNGMLCSEHIRLVAAFDHRDIFIDPDPDAAASYAERQRLFALPRSSWQDYDRSLISEGGGIFPRSAKSIPVNARVREALGIAGDVARMTPAELMRAILLAPVDLLWNGGIGTYVKAETETDADAGDKANDAIRVNGGELRVRCVGEGGNLGCTQRGRIEYAVTGGRINTDFIDNSAGVDTSDHEVNLKVLLDRVVRDGDLTGKQRNELLASMTDEVADLVLRDNYEQNLALANAAKNAPSLLHVHEQWMRHLETEGLLDRALEALPPTREVKRRIEAGGALTQPELAVLMAYTKIVLAEELLASDLPDDPYLTLDLRSYFPKPVQDGFLDQIAAHPLRREIIVTQVVNDLVNGAGMTYWPRLAGETGASPAELTRANFVAREIFGSLDVRRELEQYDNVLDAGLQTRMRVEMRTLVERASRWLVTNRRPPLDSQGNVEFFATRVQDAMLELPHLLTGAELASYEARRASLEAQDVPADLASRVASFDVAYTLLNVTEIAEAADLPPADVARVHFALGERLGVSALQQRIVDLPRADQWQTMARAALRDDLHAVHAQLTGEVLAATSDLAPEPDEDARAFASRRVAAWEDNAGGVVDQAIGALTAVCTDEPSDIAKVSVGLRVVRGLLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN78</accession>
    <name>A0A0Q8VN78_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22825</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892584.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58900">
        <property type="protein sequence ID" value="KRC58900"/>
        <property type="gene ID" value="ASE19_22825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1802502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025326">
        <property type="entry name" value="DUF4232"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14016">
        <property type="entry name" value="DUF4232"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="81"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="383" mass="38979" checksum="BC05A7706A3BED46" modified="2016-01-20" version="1">MTEHDPRDARMDERLRTAGEQWRAGLPAAGRPPVPVAEAGRRRWLVPAAAAAAAVAAITATTLALGNEHGEDPAPPVTSEPTSTPTTTPTEGTPTTPAVPVACAAGDLVPGVPSTGVAAGTVAITVPLTLATDAESCTIGGYAEVAFLDHGSDLGLRATHNPAWPDTPVTVRRGTTVGVTVGWAVHHDCSDVDNDMLRLTLPGGQMVEVDGFGATSCEPGESTSPPWVGALTTDVAAGAATTTSATPPDAACGPGDLVLGSPMTEGAAGTMVTYADLTLADGKDPCTMRGYPEVAFLDHGKDLGLTPGHNKAFDPENVRMAPGTTATVIVGWAVHHYCGDLDNDAVRLTLPGGQVVEMPGFGPTSCDPGEGLPQPWIGAVTRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNF9</accession>
    <name>A0A0Q8VNF9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22620</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893048.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58988">
        <property type="protein sequence ID" value="KRC58988"/>
        <property type="gene ID" value="ASE19_22620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="22"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="144"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="HisKA_3" evidence="2">
        <location>
            <begin position="179"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="376" mass="39580" checksum="2771E1014DDD5DCA" modified="2016-01-20" version="1">MLAAFFRSVLAEPRAPDPPARVWWDWLLVGALLVTAAGEAIFRSDLPMRPLGVAVAFVVIPALLWRRTRPLLSTAVGFGGALVLLAPTVLGDAGDVGLDSMACVLLLPYALYRWASGREALVGTAVVAVPAGLGLATSGRVGDVIGGTTVLVASFALGAAMRYRAVARQREVEQVRTLERSELARELHDTVAHHVSAIAIQAQAGRAVAAVDPATAVETLAVIEAEAARTLHEMRTMVRVLRDGDAADYTPQRGIGDLDELARMSPLVQVRRSGDLADLPQPVEVAVYRICQESVTNALRHARHATAVTVELIGDPGVVRLRVHDDGEAARPATAGGYGLLGMAERSKLLGGTCHAGPDPAGGWTVEAALPRAVPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ03</accession>
    <name>A0A0Q8VQ03_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05745</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917943.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54951">
        <property type="protein sequence ID" value="KRC54951"/>
        <property type="gene ID" value="ASE19_05745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2057506at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="15366" checksum="F0E0743CF59F0D41" modified="2016-01-20" version="1">MHAPVPTPPRIPQRALVAGTPGPLLTGALERLAATLDLPLVPLDGLAGEDLVRLAEFEGWVTTADRYDARAALLPRADLVVVVLTEEPGTLRSLVRRTVRRMRSEVPEVDLAWVEALAVTRPTLPVVRLVGAEAVDAWLASVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ78</accession>
    <name>A0A0Q8VQ78_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00005</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59467">
        <property type="protein sequence ID" value="KRC59467"/>
        <property type="gene ID" value="ASE19_00005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1493582at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="35361" checksum="14ADBDF7FCCD2A53" modified="2016-01-20" version="1">MGSLEPEVMIEYLVNGSGILLRRDAIRAGADDNALKRAVDSSFLVRMRQGVYVLAAVWESSDALERHRLLLEGVRMLYGDDVAASHISACVEQGGPTWGLDLSRVHLTHLWGKGERSVGKVVHHRGACIVGDVTRDGHGWITSPARSALDTACLVSQESGVAVVDWYLQTGLATLYDLLQTHARMVDWPGSLGLHRVLALVDGKAESVGETRVRLMCRAHGLPAPTPQFEVRHPSGRLAGRVDFAWPELGLLLEFDGMVKYHRYRRAGETIEQMVIREKQREDLLRELTGWTVIRITWADLAHPEATVARILRAMKLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ84</accession>
    <name>A0A0Q8VQ84_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Fructose-1,6-bisphosphatase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_00535</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>beta-D-fructose 1,6-bisphosphate + H2O = beta-D-fructose 6-phosphate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:11064"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="EC" id="3.1.3.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the FBPase class 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896784.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59556">
        <property type="protein sequence ID" value="KRC59556"/>
        <property type="gene ID" value="ASE19_00535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="879338at2"/>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042132">
        <property type="term" value="F:fructose 1,6-bisphosphate 1-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01516">
        <property type="entry name" value="FBPase_glpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004464">
        <property type="entry name" value="FBPase_class-2/SBPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30447">
        <property type="entry name" value="PTHR30447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03320">
        <property type="entry name" value="FBPase_glpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004532">
        <property type="entry name" value="GlpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00330">
        <property type="entry name" value="glpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="5" id="KW-0464">Manganese</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="99"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="176"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="198"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="96"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR004532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR004532-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR004532-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="337" mass="35391" checksum="D39DD092801176F0" modified="2016-01-20" version="1">MNDALAVEPPAPDRNLALELVRVTEAAAMAAGRWVGRGDKNGADGVAVQAMRVMISTIGMNGTVVIGEGEKDNAPMLYNGEAVGDGTGPECDVAVDPIDGTTLTAKGMANSIAVLAVSPRGTMYDPSAVFYMEKLVTGPEAADVVDIRYPVAENIHQVAKAKGSNPSDVTVVLLDRPRHSQIVDEIRATGARIKFITDGDVAGAIMAARADTGIDLLLGIGGTPEGIIAACAMKAMGGTIQGRLWPTDDEERQRAIDAGHNLDPDHILTTDTLVTGDDCFFVATGITDGELVRGVRYRGGGAVTQSLVMRSRSGTIRTITSEHQLSKLRSFSSIDFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQE6</accession>
    <name>A0A0Q8VQE6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02040</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892654.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56637">
        <property type="protein sequence ID" value="KRC56637"/>
        <property type="gene ID" value="ASE19_02040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1191583at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015424">
        <property type="term" value="F:ABC-type amino acid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030679">
        <property type="entry name" value="ABC_ATPase_HisP-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039085">
        <property type="entry name" value="ABC_ATPase_HisP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="16"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="48"/>
            <end position="55"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="254" mass="27482" checksum="13E627314FF1FF3E" modified="2016-01-20" version="1">MTATVLGPNGEPAPAIDVRGLHKSYGHHEVLKGIDFFVDAGQVVCVIGPSGSGKSTLLRCVNRLEEPTSGKVLVEGIDICDPDTDLDDVRSRIGMVFQQFNLFPHLSVLKNLTLAQRTVRGRSKDEAVEVARHNLARVGLSDKEAAYPAHLSGGQQQRVAIARALSMNPDMMLFDEPTSALDPELVGDVLAVMKELATEGMTMMVVTHEMGFAREVGDKLVFMDGGVVVEEGRPAEVLGNPQHQRTQAFLSKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQZ1</accession>
    <name>A0A0Q8VQZ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896789.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59551">
        <property type="protein sequence ID" value="KRC59551"/>
        <property type="gene ID" value="ASE19_00510"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025339">
        <property type="entry name" value="DUF4245"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14030">
        <property type="entry name" value="DUF4245"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="193" mass="20770" checksum="AD3DD0FBB1C7F48D" modified="2016-01-20" version="1">MSSDRPEPTGKAGRYQRSAVGLIVSLVVTVVGVGGLLYFMGLFRPDFETKPEAVDYLETVESAQQAGLQVAYPPSLPKGWIATGVDVMVGDDPVFMIRMLTDEDRFVAVRLEDTSVGALLDAWVDQDTAVADGYDVPASVAHPVAREWDGYTDDGGDTAYAAEWQDQTVLVFGSAPAEDLHTIIDSLVTKKLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR13</accession>
    <name>A0A0Q8VR13_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA N6-adenosine threonylcarbamoyltransferase</fullName>
            <ecNumber evidence="6">2.3.1.234</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">N6-L-threonylcarbamoyladenine synthase</fullName>
            <shortName evidence="6">t(6)A synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">tRNA threonylcarbamoyladenosine biosynthesis protein TsaD</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">tsaD</name>
        <name evidence="8" type="ORF">ASE19_00320</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>adenosine(37) in tRNA + L-threonylcarbamoyladenylate = AMP + H(+) + N(6)-L-threonylcarbamoyladenosine(37) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:37059"/>
            <dbReference type="Rhea" id="RHEA-COMP:10162"/>
            <dbReference type="Rhea" id="RHEA-COMP:10163"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:73682"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74418"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.3.1.234"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="6">Binds 1 Fe(2+) ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the KAE1 / TsaD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.234" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896908.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59796">
        <property type="protein sequence ID" value="KRC59796"/>
        <property type="gene ID" value="ASE19_00320"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1257362at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061711">
        <property type="term" value="F:N(6)-L-threonylcarbamoyladenine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01445">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000905">
        <property type="entry name" value="Gcp-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017861">
        <property type="entry name" value="KAE1/TsaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017860">
        <property type="entry name" value="Peptidase_M22_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022450">
        <property type="entry name" value="TsaD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735">
        <property type="entry name" value="PTHR11735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735:SF6">
        <property type="entry name" value="PTHR11735:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00814">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00789">
        <property type="entry name" value="OSIALOPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00329">
        <property type="entry name" value="gcp_kae1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03723">
        <property type="entry name" value="T6A_TsaD_YgjD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01016">
        <property type="entry name" value="GLYCOPROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="4 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 6" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TsaD" evidence="7">
        <location>
            <begin position="27"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="137"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="286"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="314"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="352" mass="36359" checksum="09EF3B94EEF41043" modified="2016-01-20" version="1">MPDEPLVLGIETSCDETGVGIVRGHTLLADAVASSVDQHARFGGVVPEVASRAHLEAMVPTIQRACDTAGIALSDVDAIAVTHGPGLAGALLVGVASAKALALSLGKPIYGVNHLAAHVAVDQLEHGALPEPCLALLVSGGHSSLLRVTDITGTDRGVDPMGATIDDAAGEAFDKVARLLGLPFPGGPHIDRVAREGNQVAIDFPRGLTSRRDLERHRFDFSFSGLKTAVARWVEARERSGEPVPVADVAASFQEAVCDVLVRKALDAAATEGIEDLMIGGGVAANSRLRAMAEERATKLGIRVRVPRPGLCTDNGAMVAALGSTMVARGRTPSSLDLPADSSLPVTDVLAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR24</accession>
    <name>A0A0Q8VR24_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03300</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892865.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56848">
        <property type="protein sequence ID" value="KRC56848"/>
        <property type="gene ID" value="ASE19_03300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="831053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="10"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="31678" checksum="7B00080D70E069AB" modified="2016-01-20" version="1">MHAIRHHAFGPASVLQLEELPDLEPAAGQLRIAVEAAGVHLLDTSIRAGEAFGLGEPPELPVVPGREVAGVVDRVGAGVDGAWVGRRVVAHLGFAGGGYADQAVVDATRAYALPDHLDAPTAVAAIGTGRTAAAILALAAITPEDAVAVTSAAGGLGVLLLQGVRAIGAAALGVAGGADKVAVAAKHGAEPALDRRAPGWLGQVGPLTVVLDGVGGEVGQALYERLVPGGRLIRYGWASGVQNAYDDPARPVVDVLGPPIMSRLAEFERAALDAAADGSRVPYVGSVFPLEEAAAAHRALEEGTSVGKVVLAVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR26</accession>
    <name>A0A0Q8VR26_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00740</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896892.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59812">
        <property type="protein sequence ID" value="KRC59812"/>
        <property type="gene ID" value="ASE19_00740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="498436at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="212"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="303"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="331"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="421"/>
            <end position="438"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="457" mass="47276" checksum="EB7DBC86A38BE976" modified="2016-01-20" version="1">MAETGSIRAAKATARGMKGFARVTGRASRATVRTARKAAGAQGAERSGLNRLIELHAANAAGDSAFAIALAGTVFFAGATSGQRGPVLLFLGLTMVPFAIVAPLIGPFLDRFSHGRRWAIGATFALRAFLCWVLAGTLTSGSPWFYVAALGVLVSSKAYGVAKAAAVPRLVPPEITLVKANGRVALAGVVGACVSGPLAGLAYWIGPEWACRYAFLVFTLGTVAAILLPAKIDATGDEESIDAPRDPRSGVRRGNGLPPQVAFALRANCGPRLLSGFLTMFMTFVLATEPLDGWESKTKSTLLVGLVIGAAGLGNTLGIVVASLARRINPAVMVVVALLADIVALVFATIFYGLLPLVVLGLTVGLMQYLAKVSLDSTIQSGVPVRAHASAFAKGDTTLQLAWVIGGFLGVILSYPAINGVGLGFAAVLLTAWAVFVLRSAPARRKRAAERPVTTVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR47</accession>
    <name>A0A0Q8VR47_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03580</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56897">
        <property type="protein sequence ID" value="KRC56897"/>
        <property type="gene ID" value="ASE19_03580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="391213at201174"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360288" evidence="1">
        <location>
            <begin position="24"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="328" mass="34538" checksum="6519AB108C9891C7" modified="2016-01-20" version="1">MRRTAGVAALVLVVSGLSLRADADPDALRFAGISGGAGIEVWDFWPKGGSCGSTQEADADPHAVVANGGWQASVMDASGEVAGVPVGGHSTSTYRYSRDLRGTARIDLRVASNAHLAPGPAEPCSIIYEVGGAVMVHVTTRRRSWLVGRSADKVTGYRATNGGYVGLAVYDAANRRVARADVGGRVTRLVPPDTYRSGLQLTVRLELPAGDGSQLEGSLIGSGSISFIPVGTRRTLTGTGTDLITVGHRDCARNRVAAFFSSAARTRLRSATFVVDGQRRAVLRGRELQHSSLVLDRIARRSAGKVSVRMVLRSGARRVTASTSWPCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSB8</accession>
    <name>A0A0Q8VSB8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Pilus assembly protein PilC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_03935</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GSP F family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892979.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56962">
        <property type="protein sequence ID" value="KRC56962"/>
        <property type="gene ID" value="ASE19_03935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1268170at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.81.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003004">
        <property type="entry name" value="GspF/PilC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018076">
        <property type="entry name" value="T2SS_GspF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042094">
        <property type="entry name" value="T2SS_GspF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30012">
        <property type="entry name" value="PTHR30012"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00482">
        <property type="entry name" value="T2SSF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00812">
        <property type="entry name" value="BCTERIALGSPF"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="166"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="219"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="372"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSF" evidence="8">
        <location>
            <begin position="67"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSF" evidence="8">
        <location>
            <begin position="269"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="401" mass="44829" checksum="E10C484E4EB90121" modified="2016-01-20" version="1">MPKFAYVGVDLAGDRVKGTQKAPSRGDAEVALYERDYRDLRVTEKKNILQYEISGPRIKREQVMHLSRQIAAFLRAGLPILDAVHAIGAESDNSSVRRMMHDIEDGLRTGERFSDTLERYPRVFPEFYRGIVRSAELTGELDMVLSRLAIYIQRDLDARRKIKSAAMYPIAVAGLSVVTVLVLALYVLPKFEDFFADLDADLPWPTRFMLDTSEFIGNWWWAILGGVAAGALLSWLILRFERGKYARDAFLLKVPVLGTTIQYALVERFCRVMASMVSAGVNLPEAIRVATDSLKNRVFIKRLNGVTEQMLEGQGLAGPLARTELFPGTATSMLRVGEETGSMDTQLEVTAEYYEDELDYKIAKLTSLFEPIVIMVMGGIVGFVAIALVSAMYGIYAQVEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VT55</accession>
    <name>A0A0Q8VT55_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Proteasome protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22900</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58915">
        <property type="protein sequence ID" value="KRC58915"/>
        <property type="gene ID" value="ASE19_22900"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000502">
        <property type="term" value="C:proteasome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10900">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008492">
        <property type="entry name" value="DUF774"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019151">
        <property type="entry name" value="Proteasome_assmbl_chaperone_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038389">
        <property type="entry name" value="PSMG2_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09754">
        <property type="entry name" value="PAC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028754">
        <property type="entry name" value="UCP028754"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0647">Proteasome</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="317" mass="34667" checksum="F27E6226E2216F86" modified="2016-01-20" version="1">MTAPTRLVHIVDDVPELADVEGLSMVVALDGFLDAGNAGALAARHLVRTGASSPEGGGVVVATFDVDELHDYRARRPPMTFARDHYEGYEAPRLVVRLLHDHGGTPYLLLQGPEPDIRWEAFCRAVLEVVERFHVQLVVSVGSVPMAVPHTRPIAITHHANNADLLTGTSPWRGELRVPSSAQALLEVRLGEWGHDAQGFVAHVPHYLAQLDYPRASQALLEQVELAARLTIDLNELGELAEEREEEIGRYLSANDEVQEVVTALEQQYDTFARAEAEGSSLLAEDEPLPTGEEIGRQFEQFLAGLEGPEETGGGRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTA8</accession>
    <name>A0A0Q8VTA8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">Phenylalanine--tRNA ligase beta subunit</fullName>
            <ecNumber evidence="14">6.1.1.20</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Phenylalanyl-tRNA synthetase beta subunit</fullName>
            <shortName evidence="14">PheRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">pheT</name>
        <name evidence="19" type="ORF">ASE19_23285</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19 20">Root79</strain>
        </source>
    </reference>
    <reference evidence="19 20" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19 20">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + H(+) + L-phenylalanyl-tRNA(Phe)</text>
            <dbReference type="Rhea" id="RHEA:19413"/>
            <dbReference type="Rhea" id="RHEA-COMP:9668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9699"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78531"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="14">Binds 2 magnesium ions per tetramer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 14">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.20" evidence="14"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892508.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58979">
        <property type="protein sequence ID" value="KRC58979"/>
        <property type="gene ID" value="ASE19_23285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="53568at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004826">
        <property type="term" value="F:phenylalanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006432">
        <property type="term" value="P:phenylalanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00769">
        <property type="entry name" value="PheRS_beta_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02796">
        <property type="entry name" value="tRNA_bind_bactPheRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00283">
        <property type="entry name" value="Phe_tRNA_synth_beta1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005146">
        <property type="entry name" value="B3/B4_tRNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005121">
        <property type="entry name" value="Fdx_antiC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036690">
        <property type="entry name" value="Fdx_antiC-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045060">
        <property type="entry name" value="Phe-tRNA-ligase_IIc_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004532">
        <property type="entry name" value="Phe-tRNA-ligase_IIc_bsu_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020825">
        <property type="entry name" value="Phe-tRNA_synthase-like_B3/B4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041616">
        <property type="entry name" value="PheRS_beta_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002547">
        <property type="entry name" value="tRNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033714">
        <property type="entry name" value="tRNA_bind_bactPheRS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005147">
        <property type="entry name" value="tRNA_synthase_B5-dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10947">
        <property type="entry name" value="PTHR10947"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03483">
        <property type="entry name" value="B3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03484">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03147">
        <property type="entry name" value="FDX-ACB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01588">
        <property type="entry name" value="tRNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17759">
        <property type="entry name" value="tRNA_synthFbeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00873">
        <property type="entry name" value="B3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00874">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00896">
        <property type="entry name" value="FDX-ACB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54991">
        <property type="entry name" value="SSF54991"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00472">
        <property type="entry name" value="pheT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51483">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51447">
        <property type="entry name" value="FDX_ACB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50886">
        <property type="entry name" value="TRBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13 14" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="9 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="14" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 14 19" id="KW-0436">Ligase</keyword>
    <keyword evidence="10 14" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12 14" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 15" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 15" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="TRNA-binding" evidence="16">
        <location>
            <begin position="42"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="B5" evidence="18">
        <location>
            <begin position="410"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="domain" description="FDX-ACB" evidence="17">
        <location>
            <begin position="735"/>
            <end position="828"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="464"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="470"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="473"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="474"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="KRC58979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="828" mass="87205" checksum="20D6FDFD243ACED1" modified="2016-01-20" version="1">MKAPVSWIRELVDLPESVTTEVLTDRLTALGLKLEGIHAAGAGIEGPLVIGRVLTQDKEPQKNGKVINWCTVDVGDANGSGEPQGIVCGAHNFGPGDKVVVILPGGVLPGDFRISERKTYGHLSAGMICSAAELGLPDDGADGIIVVPADGPEPGTDAREFLGFGDEVIEFEINPDRAYALSLRGVAREAALGFDVAFTDPAVRELPEVDGKAWQVDVEDPAGCPVFAARLVSGFDPTRPTPEFIQRRVEQAGMRSISLAVDVTNYVMLELGQPIHGYDADKVAGGLGVRRARSGERLTTLDDAVRELSTEDLVITDDSGPIGLAGVMGGATTEMSDTTTRILVEAAHWDATSMFRTGKRHKLTSEAGKRNERGVDPLLPGVAVDRVVELLVAHGGATAEPGFTLVGTAPERPTITIAPDLPARLSGIDISAMTTVEHLRAIGAVVTEHESGALEVVPPSWRPDINDPYDLVEEVVRIVGYDQVPSVLPRRATGRGLSRTQRLRRRIGRTLAGAGCVEVVSFPFVGPATFDKLGLAADDPLRTTVGLANPLSSEEPSYTTTLLPGLLNAAARNVGRGAPGVALFETGTVAFPSDNGPAPIYGVHTRPSEAELEKLFEALPVQPLHLAVVLAGERTRSGWWGAGAEAGWSDALSVVRRLADELGVEIEVTSAARMPWHPGRCAVISVDEVVIGHAGELHPTVCKAFGLPVRSAAVELDLDALMAAAVDVTPGPVFSTMPLAKEDVALVVDDAVTVAAVEDALRDGAGELLESVRLFDVYTGEQIGEGRKSLAFALRFRAADRTLTEAETGAARDAAVAAAAERTGAVQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUI5</accession>
    <name>A0A0Q8VUI5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00150</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896849.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59491">
        <property type="protein sequence ID" value="KRC59491"/>
        <property type="gene ID" value="ASE19_00150"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011075">
        <property type="entry name" value="TetR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16859">
        <property type="entry name" value="TetR_C_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="16"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="195" mass="20478" checksum="7AA63888D3BB6E60" modified="2016-01-20" version="1">MGTRSSTRTTGRPRDPRIEQAAVAAVRELLAEGGYAAVTGTAVAARAGTTKAALYRRWPALPHLVHEAVFPGELALGTDLEADLDAVVARLVSGTRDALCSPVAVAALPGLLAEASTYPDLHASMIRRFSGVLVAMDERLRQAMAAGEAHPDARADDLVQLVVGTVIAAILLTPGALDDAWADRLTRSVLRSLRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVA1</accession>
    <name>A0A0Q8VVA1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Co-chaperonin GroES</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">10 kDa chaperonin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Chaperonin-10</fullName>
            <shortName evidence="3">Cpn10</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">groES</name>
        <name evidence="3" type="synonym">groS</name>
        <name evidence="5" type="ORF">ASE19_00280</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 4">Together with the chaperonin GroEL, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding. GroES binds to the apical surface of the GroEL ring, thereby capping the opening of the GroEL channel.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Heptamer of 7 subunits arranged in a ring. Interacts with the chaperonin GroEL.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 4">Belongs to the GroES chaperonin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896909.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59795">
        <property type="protein sequence ID" value="KRC59795"/>
        <property type="gene ID" value="ASE19_00280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1965002at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00320">
        <property type="entry name" value="cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.33.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00580">
        <property type="entry name" value="CH10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020818">
        <property type="entry name" value="Chaperonin_GroES"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037124">
        <property type="entry name" value="Chaperonin_GroES_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018369">
        <property type="entry name" value="Chaprnonin_Cpn10_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10772">
        <property type="entry name" value="PTHR10772"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00166">
        <property type="entry name" value="Cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00297">
        <property type="entry name" value="CHAPERONIN10"/>
    </dbReference>
    <dbReference type="SMART" id="SM00883">
        <property type="entry name" value="Cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00681">
        <property type="entry name" value="CHAPERONINS_CPN10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00580"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="97" mass="10338" checksum="7175F2F55D91C9F2" modified="2016-01-20" version="1">MSVNIKPLEDRIVVKAVEAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRIDDNGNRVPLDVAVGDKVIYSKYGGTEVKYAGQEYLILSARDVLAVIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYD1</accession>
    <name>A0A0Q8VYD1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">IclR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_00035</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896870.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59472">
        <property type="protein sequence ID" value="KRC59472"/>
        <property type="gene ID" value="ASE19_00035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="370329at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="22"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="83"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="274" mass="29580" checksum="CE098721F5204400" modified="2016-01-20" version="1">MSLLTMEQEEVRTGTATRELPPSMVERMTLILDLFGERDTWLTLEEIARTTGLPRSTAHRILDQLVRLEWLEHASFGYGLGRRSLGLGGGTADHAELRSAASPYLHDLLLRTGAVIHLGVLEGSRVHYLDKLGGRFAATVPSRVGGFAPAHCTGLGKAMLAWLEPEHVDVLVGDELRPRTAASISGLDALHGELARIRFRSGLALERGECFPEIACVAAAIRGPRGPIGAISIVAGAGTALERVAPLVVDATRRIAEDLFPDVDPQSRRLHVVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W259</accession>
    <name>A0A0Q8W259_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01830</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59783">
        <property type="protein sequence ID" value="KRC59783"/>
        <property type="gene ID" value="ASE19_01830"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="203"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="231" mass="24315" checksum="8BEBE04B87DD0B2E" modified="2016-01-20" version="1">MRVPARTDATGRLRGYVRLAALGDELAGVVPDGWAWLLAHAVGQDHDLSFHAAATPGSRVADVLRRQAFDAVAHRAHVVLLTVGGHDLRSADWDATAFRRDLLDACAALVRDGALLVLSRLPSAAGAAARVAAANAALDEAHLRFGGALLDLAAHPGTEDAEFWSVPGALPSELGHQALLDEVAELLGEHGLAVATDLRSDLRTPHHASPMTTVTDYGAGRGLPLRPDEER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMH9</accession>
    <name>A0A0Q8UMH9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20265</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial histone-like protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895971.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46198">
        <property type="protein sequence ID" value="KRC46198"/>
        <property type="gene ID" value="ASE19_20265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1847472at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000119">
        <property type="entry name" value="Hist_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010992">
        <property type="entry name" value="IHF-like_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33175">
        <property type="entry name" value="PTHR33175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00216">
        <property type="entry name" value="Bac_DNA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01727">
        <property type="entry name" value="DNABINDINGHU"/>
    </dbReference>
    <dbReference type="SMART" id="SM00411">
        <property type="entry name" value="BHL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47729">
        <property type="entry name" value="SSF47729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="96"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="191"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="209" mass="21001" checksum="D728015891F18191" modified="2016-01-20" version="1">MNKSQLIDALADRFEGSRKDAAHALDSVLDTITRQVAKGEKVAITGFGSFEKAVRNARWVRNPQTGERVKTKKKAVPKFSAGADLKNVVSGAKKLPALPKPAKKAAAAPAAAAKKAAAPAKKAATTAAKKAAAPAKKAAATAKKAAPAKKAAPAKKAPAAKKAAPAAKKAPAAKKAAPAKKAAPAAKKAPAKKAPAKKAPAKKAPAKKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMK3</accession>
    <name>A0A0Q8UMK3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Formamidopyrimidine-DNA glycosylase</fullName>
            <shortName evidence="15">Fapy-DNA glycosylase</shortName>
            <ecNumber evidence="15">3.2.2.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">DNA-(apurinic or apyrimidinic site) lyase MutM</fullName>
            <shortName evidence="15">AP lyase MutM</shortName>
            <ecNumber evidence="15">4.2.99.18</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="primary">mutM</name>
        <name evidence="15" type="synonym">fpg</name>
        <name evidence="19" type="ORF">ASE19_20160</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19 20">Root79</strain>
        </source>
    </reference>
    <reference evidence="19 20" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19 20">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="14 15">
            <text>2'-deoxyribonucleotide-(2'-deoxyribose 5'-phosphate)-2'-deoxyribonucleotide-DNA = a 3'-end 2'-deoxyribonucleotide-(2,3-dehydro-2,3-deoxyribose 5'-phosphate)-DNA + a 5'-end 5'-monophospho-2'-deoxyribonucleoside-DNA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:66592"/>
            <dbReference type="Rhea" id="RHEA-COMP:13180"/>
            <dbReference type="Rhea" id="RHEA-COMP:16897"/>
            <dbReference type="Rhea" id="RHEA-COMP:17067"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:136412"/>
            <dbReference type="ChEBI" id="CHEBI:157695"/>
            <dbReference type="ChEBI" id="CHEBI:167181"/>
            <dbReference type="EC" id="4.2.99.18"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>Hydrolysis of DNA containing ring-opened 7-methylguanine residues, releasing 2,6-diamino-4-hydroxy-5-(N-methyl)formamidopyrimidine.</text>
            <dbReference type="EC" id="3.2.2.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="15">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 15">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 15">Belongs to the FPG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.23" evidence="15"/>
    <dbReference type="EC" id="4.2.99.18" evidence="15"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895955.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46180">
        <property type="protein sequence ID" value="KRC46180"/>
        <property type="gene ID" value="ASE19_20160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1162346at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140078">
        <property type="term" value="F:class I DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008534">
        <property type="term" value="F:oxidized purine nucleobase lesion DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00103">
        <property type="entry name" value="Fapy_DNA_glycosyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015886">
        <property type="entry name" value="DNA_glyclase/AP_lyase_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015887">
        <property type="entry name" value="DNA_glyclase_Znf_dom_DNA_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020629">
        <property type="entry name" value="Formamido-pyr_DNA_Glyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012319">
        <property type="entry name" value="FPG_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035937">
        <property type="entry name" value="MutM-like_N-ter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010979">
        <property type="entry name" value="Ribosomal_S13-like_H2TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000214">
        <property type="entry name" value="Znf_DNA_glyclase/AP_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010663">
        <property type="entry name" value="Znf_FPG/IleRS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01149">
        <property type="entry name" value="Fapy_DNA_glyco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06831">
        <property type="entry name" value="H2TH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06827">
        <property type="entry name" value="zf-FPG_IleRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00898">
        <property type="entry name" value="Fapy_DNA_glyco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01232">
        <property type="entry name" value="H2TH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46946">
        <property type="entry name" value="SSF46946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81624">
        <property type="entry name" value="SSF81624"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00577">
        <property type="entry name" value="fpg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51068">
        <property type="entry name" value="FPG_CAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01242">
        <property type="entry name" value="ZF_FPG_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51066">
        <property type="entry name" value="ZF_FPG_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 15" id="KW-0227">DNA damage</keyword>
    <keyword evidence="10 15" id="KW-0234">DNA repair</keyword>
    <keyword evidence="9 15" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="13 15" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="7 15" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11 15" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12 15" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 15" id="KW-0862">Zinc</keyword>
    <keyword evidence="6 15 16" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="FPG_CAT" evidence="18">
        <location>
            <begin position="2"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="FPG-type" evidence="17">
        <location>
            <begin position="245"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with DNA" evidence="15">
        <location>
            <position position="2"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="15">
        <location>
            <position position="3"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor; for beta-elimination activity" evidence="15">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor; for delta-elimination activity" evidence="15">
        <location>
            <position position="269"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>DNA</name>
            <dbReference type="ChEBI" id="CHEBI:16991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>DNA</name>
            <dbReference type="ChEBI" id="CHEBI:16991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>DNA</name>
            <dbReference type="ChEBI" id="CHEBI:16991"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00024490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="KRC46180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="287" mass="31487" checksum="330F19B6204E09DA" modified="2016-01-20" version="1">MPELPEVEVVRAGLERHVSGATITLVDVLHDRPVRRHPGGASGFATALTGRRIEGARRRGKYLWLPLDNGDAILGHLGMSGQMLVQPVDAPAERHLRVRFALTGTDHGRELRFVDQRMFGGLSVSAGGAELPHEIAHIARDPLDPQFDDEAFVARLRKRTSGVKRLLLDQGLISGVGNIYADEALWRAGLHGERPGDRLTRVQAVSLLGHAREVMTAALAQGGTSFDALYVNVNGESGYFDRSLHAYGREGEACDRCGTPIRRVAFMNRSSYFCPKCQPVPRLTRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMQ3</accession>
    <name>A0A0Q8UMQ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_20675</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46261">
        <property type="protein sequence ID" value="KRC46261"/>
        <property type="gene ID" value="ASE19_20675"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.90.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035328">
        <property type="entry name" value="DUF3048_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021416">
        <property type="entry name" value="DUF3048_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023158">
        <property type="entry name" value="YerB-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11258">
        <property type="entry name" value="DUF3048"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17479">
        <property type="entry name" value="DUF3048_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159774">
        <property type="entry name" value="SSF159774"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359220" evidence="2">
        <location>
            <begin position="31"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3048" evidence="3">
        <location>
            <begin position="55"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3048_C" evidence="4">
        <location>
            <begin position="222"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF17479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="347" mass="36675" checksum="AAF2DBAC1597D84D" modified="2016-01-20" version="1">MHVKTLRTALPASLVALSLVLAACGGDDKSDEKPQGDASTSQSPTAPPEPETWPLTGELTKGGASAALEHPAYIVKIDNSQASYPQLGVSKADIVVEELVEGGITRLAVLYYEKLPKKVGPVRSMRLTDIGIAKPLDAQIVTSGAADVTLRGLRKAGITFIDMNNPHVVRDLDGTHDSLHSVMANLKAIGADAKIRARRPADYLPFGDTALPAGKPATSIDVRLSGSRTSQWKYDGKTYVLQNGYMADGDAFKPDTVIAATVRTTLAPYTDPIGNPVPVSHFEGRGKAVIFHDGQAIAATWEKADRGAELIFKDAAGNAIEIPAGKTWLELVPGKGAASTGSVTYRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMS6</accession>
    <name>A0A0Q8UMS6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">GRAM_POS_ANCHORING domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_20860</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896065.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46294">
        <property type="protein sequence ID" value="KRC46294"/>
        <property type="gene ID" value="ASE19_20860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1988568at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019931">
        <property type="entry name" value="LPXTG_anchor"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00746">
        <property type="entry name" value="Gram_pos_anchor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0134">Cell wall</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0572">Peptidoglycan-anchor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0964">Secreted</keyword>
    <keyword evidence="2 5" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359229" description="GRAM_POS_ANCHORING domain-containing protein" evidence="5">
        <location>
            <begin position="26"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="162"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="domain" description="GRAM_POS_ANCHORING" evidence="6">
        <location>
            <begin position="151"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="191" mass="19332" checksum="BE1246FF72D975C4" modified="2016-01-20" version="1">MLRKLAALAVLSVAVVAVPAGAAQADPTEPESIPTRTIIEIVRAVPGKPVLLDVSATANYPVPPEGDIDVAISTAAGTARGARAVAAAPLFTTTVHFVDEPVRVTGPTLPRGRYLATAALDPDDAIFLPSDTATTFRIAVGGDTGGKDDDGDNLPNTGGPDMMWLLLGGALVAAGAGGVTYGRRRTQAVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UQM3</accession>
    <name>A0A0Q8UQM3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA polymerase III subunit delta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895865.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46089">
        <property type="protein sequence ID" value="KRC46089"/>
        <property type="gene ID" value="ASE19_19620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1199768at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009360">
        <property type="term" value="C:DNA polymerase III complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008921">
        <property type="entry name" value="DNA_pol3_clamp-load_cplx_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010372">
        <property type="entry name" value="DNA_pol3_delta_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005790">
        <property type="entry name" value="DNA_polIII_delta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06144">
        <property type="entry name" value="DNA_pol3_delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48019">
        <property type="entry name" value="SSF48019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01128">
        <property type="entry name" value="holA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_pol3_delta" evidence="1">
        <location>
            <begin position="13"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="34141" checksum="403446A56B253297" modified="2016-01-20" version="1">MRAADVLGRVILVTGKEEYLGARTVDEVKAAVREHDADAEFADASAAGLTLATLGEMSAPSLFSAIRCVVVRGLEDLPDESVEGLLGYAGAPSEDVALVLVHGGGQKGSGVLTKLRKLGPVTEHKSEELKPSDFPNFVANEVRRHGATIDRDAADVLIEAIGRDLRSLAGAAHQLTNDFPGERISEAQVRRYFGGRAEAKSFAVADAAFAGRDRVALEELRWALDAGTAAVLITSAFAGSARGLARLVSAPRGMRDADLAREVGVPPWKLRSLRDQARGWSEPGLARAIRAVAQADADIKGAASDASYALERLVLTITALRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUG3</accession>
    <name>A0A0Q8UUG3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cobalamin biosynthesis protein CobN</fullName>
            <ecNumber evidence="1">6.6.1.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">cobN</name>
        <name evidence="1" type="ORF">ASE19_17370</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.6.1.2" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893113.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48708">
        <property type="protein sequence ID" value="KRC48708"/>
        <property type="gene ID" value="ASE19_17370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="8025at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051116">
        <property type="term" value="F:cobaltochelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10150">
        <property type="entry name" value="CobN_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011953">
        <property type="entry name" value="Cobalto_CobN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003672">
        <property type="entry name" value="CobN/Mg_chltase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44119">
        <property type="entry name" value="PTHR44119"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02514">
        <property type="entry name" value="CobN-Mg_chel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02257">
        <property type="entry name" value="cobalto_cobN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1189" mass="128265" checksum="AA97865A5D7C8D31" modified="2016-01-20" version="1">MRIALLSTSDTDLLSARASGADYTWSNPSRTDLSGLVSLGEGADLVVIRLLGSPQQYDAELAALRGTGRPLVVLGGEQTPSAELMEASTVPVGIAAEAHRYLAEGGPRNLGQLHAFLSDTVLLTGEGFEAPEEIPAWGTLERDQVAGDRVQVGVLFYRAHHASGNTAFVHALCDAIDATGDAVGVPVFAGSLRSAPDELFTALGELDALVVTVLAAGGSTPAAVSAGGDDETWDVERIAALDIPVLQGLCLTSSRDEWEESDDGVTPLDYANQVAIPEFDGRISTAPFSFKEIDEAGLPSYVADEERAARVAGLAVNYARLRKVPNAEKRIALMLSAYPTKHSRIGNAVGLDTPVSAVRMLRRLRDAGYDVGDGFGVLDLEDDTVAGDTLIHALIAAGGQDEEWLTSGQLTDAHVRISADDYAAWTADLPDDLRDAMVEAWGPAPGRLFVNDRDEIVLATLQAGNVVVMIQPPRGFGENPVAIYHDPDLAPSHHYLAAYRWVQHGFGAHAVVHLGKHGSMEWLPGKNAALSASCATDAAIGSMPLIYPFLVNDPGEGAQAKRRAHATIIDHLIPPMARAEAYGDIARLEGLLEEYDKISAMDPAKLAAIRGEIWQLMHAAELHRDLGLDEKPEDDDFDDFLLHVDGWLCEIKDVQIRDGLHVLGQAPEGEARVNLVLAILRAAQVWGGTSHAVPGLRAALGLAPDAPTAEVDRVEAEARELVEAMEKASWDLGRVDDLHSSPEVRKVLAFAATEVVPRLARTSDELDHTLHALAGGYVPAGPSGSPLRGLVNVLPTGRNFYTVDPRAVPSRLAWQTGQAMADSLIERYLSEEGSYPESVGLSVWGTSAMRTSGDDIAEVLALLGVRPEWDEASKRVHALTVVPLAELGRPRIDVTVRISGFFRDAFPHVVAMLDDAVRMVAELDEPADQNFVRAHAAADVAEHGDARRATTRIFGSKPGSYGAGILQAVESGSWRDDADLAEVYTAWGGFAYGRDLDGVPAADDMRANYRRIKVAAKNIDTREHDIADSDDYFQYHGGMVATIRALTGSAPKAYVGDSTTPDAVRTRTLQEETNRVFRARVVNPRWIGAMQRHGYKGAFELAATVDYLFGFDATAGVVHDWMYESLARSYVLDETNQEFLRKSNPWALRSIVERLHEAKDRGLWESPDPEVLAALQAAYLEVEGDLEDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUM7</accession>
    <name>A0A0Q8UUM7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18490</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48901">
        <property type="protein sequence ID" value="KRC48901"/>
        <property type="gene ID" value="ASE19_18490"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="399" mass="42983" checksum="26B5E3D7CAC852B9" modified="2016-01-20" version="1">MNGVEGHRIVFVRGRGTMVYDESGKEYFDAPASLWLTNVGHGRVEIAEAMREQAGRLEYYSSFGRFTTDVTLALAERVARLSPLGSTKVLFTSGGSDGIDLAAKLARRYWDAVGRGEKTVVVTRDLAYHGLHAFGTSMTGIAANQEGIGRLVPDVARVPLHDIDALEALFVREAGRIAAFFTEPVLGTGGVHLPEADYMRRVNELCRRHDVLLVADEVITGFGRLGQWFGSSRVGLEPDIIVTAKGISSGYAPLGAVLVGSRVADPFFGPQALTFRHGMTYAGHSVSAAAGLANLDILESERLVERVRDLEAPLFNELARLECHDTVREVRGGLGLMVGIEMVDAEAAQQVSEVCLGEGFIVRVITGGTLQVSPPFTTPVEEIFALGAVLDTTIGSLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUW5</accession>
    <name>A0A0Q8UUW5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Protein-export membrane protein SecF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">secF</name>
        <name evidence="11" type="ORF">ASE19_19115</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Forms a complex with SecD. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the SecD/SecF family. SecF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893408.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49006">
        <property type="protein sequence ID" value="KRC49006"/>
        <property type="gene ID" value="ASE19_19115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="410730at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015450">
        <property type="term" value="F:protein-transporting ATPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01464_B">
        <property type="entry name" value="SecF_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022813">
        <property type="entry name" value="SecD/SecF_arch_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022645">
        <property type="entry name" value="SecD/SecF_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022646">
        <property type="entry name" value="SecD/SecF_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005665">
        <property type="entry name" value="SecF_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30081">
        <property type="entry name" value="PTHR30081"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07549">
        <property type="entry name" value="Sec_GG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02355">
        <property type="entry name" value="SecD_SecF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01755">
        <property type="entry name" value="SECFTRNLCASE"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00916">
        <property type="entry name" value="2A0604s01"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00966">
        <property type="entry name" value="3a0501s07"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="25"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="149"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="175"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="201"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="259"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="284"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="360"/>
            <end position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC49006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="44549" checksum="96778D6C5EAFF407" modified="2016-01-20" version="1">MGKMSRLGNDLYQGRKSVNFVGKPWLFYGISALLVGLAVVVLFAKPLNMGVEFTGGTTLSVPVGDGKATQDAADKLQETVAGSGIENAENPTVTTEGNKALTIQVENLTQQQREAMTELIHEEFSQVDTGDITIQDIGPSWGQEVAKKAAIGVGIFLVLVVLFIWGYFREWRMSVAAFIALVHDVMLTVGVYALSGFQVTPAAVTGLLAILGFSLYDTVVVFDKIKENTHQLRKNTQTYADAANLAVNQTLVRSINTSIVALIPIGAILYVSAVQLGASSLQDLALAQFVGMGVGVYSSVMLAPRVLVHLKMQETEVQIQARRARAKQRALADRYASVPAGVEEGPVRDGGLDLEDPVELAEADDVDEAPTSSRLPMQGAVGKGRNVPAPNRPVKDSGSSGRTQPSRQARSKRGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV43</accession>
    <name>A0A0Q8UV43_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19465</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893468.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49066">
        <property type="protein sequence ID" value="KRC49066"/>
        <property type="gene ID" value="ASE19_19465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1293876at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="41"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC49066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="375" mass="39791" checksum="A1B49BF956A3BAAE" modified="2016-01-20" version="1">MSNPLEDALREAFATDVAVDADRFTGGVRAGVRRRRQTRRAVVGAAVATLALAGAVVVGVGTNGGDDTAPPTDHVTDSNGVGSPPVRPNGLAVVGDVLYAITPGLATDCGCSQVFRHDGHWSQIGEIPAEFVIQLTFAANGTDAWATDTNGRLLASHDGARTWTALDHPRARDDAGLSLALGDQGLMVFDDGRHRMWRGDPATDALTEVAVPDIGDPSGLDVVGDAFILVPPGETAPDGTPLAVSTDFGTTWSRLDPPCNGWSSSSRGALFVRCPLEDGTIRIWRWRPGEDFHRFADVDVASDDGWAPLDDDRLLLKLGDDERIVTAAGEQEITTYLAADQILNGTAAIGDHLYIVTFDGFQESLDGGTTWRPVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVQ7</accession>
    <name>A0A0Q8UVQ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18010</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893833.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49103">
        <property type="protein sequence ID" value="KRC49103"/>
        <property type="gene ID" value="ASE19_18010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="478143at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC49103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="467" mass="50986" checksum="721CABFCB7D8BFD2" modified="2016-01-20" version="1">MSTVYDESAHSALQQSARDHLWMHFTRMSSYDTADVPVIVRGEGAYVWDAQGRKYLDALGGLFVSQLGHGRTDLAEAAAKQASELAFFPLWSYAHPTAIELAAKIAGYAPGDLNRVFFTSGGGEAVESAWKLAKNFFKLTGKPLKHKVISRSIAYHGTTHGALSITGLPGLKAPFEPLVPSTFRVPNTNAYRASEMTGGFLDGSDPKAFGRWAADQIAVAIENEGPDTVAAVFLEPVQNAGGCFPPPPGYFDRVREICDEYDVLLVSDEVICAYGRLGHMFGAERYGYQPDIITSAKGITSGYAPLGAMIASDRIYEPFAHGTETFLHGYTFGGHPVSTAVALKNFEIFENEKINEGVREREGAFRGTLEKLLDLPIVGDVRGDGFFYGIELVKDKATKETFDEAESERLLRGFLSKALYDAGLYCRADDRGDPVIQLSPPLICDQSHFDEIEQKLRAVLTEAATLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVU2</accession>
    <name>A0A0Q8UVU2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alcohol phosphatidyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19755</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895885.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46109">
        <property type="protein sequence ID" value="KRC46109"/>
        <property type="gene ID" value="ASE19_19755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1938728at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016780">
        <property type="term" value="F:phosphotransferase activity, for other substituted phosphate groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00379">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="17"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="47"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="86"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="116"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="215" mass="23982" checksum="695B66C5858E20C6" modified="2016-01-20" version="1">MAGSPDRIYADPSVERLFTGATIITFVRTVITLAIAVWAAYDSSLTWIVIGLVTYWVGDSIDGEWARWRDCETRMGAVVDMMCDRLSCGALYVGLVWLQPGGWISDEPMTWIGIPIAIYLFEFMVIDMYLSLAFLAWPIRSPNYFHVIDRRIYLWNWSRVGKAANSGAFAVILLATGWVWLGTIIAVGLLVLKCVSLGWLLKLGLPVPEREAAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UW04</accession>
    <name>A0A0Q8UW04_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidase_M10 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21915</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896249.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46480">
        <property type="protein sequence ID" value="KRC46480"/>
        <property type="gene ID" value="ASE19_21915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1907192at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001818">
        <property type="entry name" value="Pept_M10_metallopeptidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021190">
        <property type="entry name" value="Pept_M10A"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00413">
        <property type="entry name" value="Peptidase_M10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00138">
        <property type="entry name" value="MATRIXIN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M10" evidence="1">
        <location>
            <begin position="76"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="248" mass="26410" checksum="ADCC036194650A6D" modified="2016-01-20" version="1">MAERWRSGVALLLSAVILLAMLFVGPGNELAALRRVLGIGQDPLGTPADVPPGGVYAFLQTQPDDDEAPVAWSPCREIRYEINPDGAPGSDDDAEALVEDAIAEVSDLTGLRFTYGGRTDRRPSWESDFVPAGRKEPVLVAWADSGEVEELEGDVAGVGGAVAVSSGPDGWMRYVTGQVTLDEDAYADLEDDDDDEGARAILLHELGHLVGLDHVESPAELMFADYLGQGDFSTGDRNGLVRLGQGRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UW52</accession>
    <name>A0A0Q8UW52_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">D-alanine--D-alanine ligase</fullName>
            <ecNumber evidence="7">6.3.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">D-Ala-D-Ala ligase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">D-alanylalanine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ddl</name>
        <name evidence="11" type="ORF">ASE19_20215</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Cell wall formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + 2 D-alanine = ADP + D-alanyl-D-alanine + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:11224"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57416"/>
            <dbReference type="ChEBI" id="CHEBI:57822"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="8">Binds 2 magnesium or manganese ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the D-alanine--D-alanine ligase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.4" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895962.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46189">
        <property type="protein sequence ID" value="KRC46189"/>
        <property type="gene ID" value="ASE19_20215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="764798at2"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008716">
        <property type="term" value="F:D-alanine-D-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00047">
        <property type="entry name" value="Dala_Dala_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000291">
        <property type="entry name" value="D-Ala_lig_Van_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005905">
        <property type="entry name" value="D_ala_D_ala"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011095">
        <property type="entry name" value="Dala_Dala_lig_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011127">
        <property type="entry name" value="Dala_Dala_lig_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07478">
        <property type="entry name" value="Dala_Dala_lig_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01820">
        <property type="entry name" value="Dala_Dala_lig_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039102">
        <property type="entry name" value="Ddl/VanB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01205">
        <property type="entry name" value="D_ala_D_alaTIGR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00843">
        <property type="entry name" value="DALA_DALA_LIGASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00844">
        <property type="entry name" value="DALA_DALA_LIGASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 7 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0464">Manganese</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="10">
        <location>
            <begin position="135"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR039102-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC46189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="355" mass="37862" checksum="D0C329C3B27AFB22" modified="2016-01-20" version="1">MNAPTGRRIRVAVVFGGRSSEHAISCVTAGSVLQAIDREKYDVVPIGIATDGRWVLEADDPARHRITGPGQLPSVDGDRAPAVLGDLDVDVVFPLLHGPWGEDGTIQGLLEMSDVRYVGSGVLASAVCMDKAFMKIALQAAGLPVMPGITVTAREWADQEVSVHTRCEELGYPLFVKPARGGSSIGIAKAHGRDELAAAIEGALAHDPKVIIEVSAEGAREIECGVLDSSDGSVEVSVPAEIRITGDHEFYDFEAKYLPEEATQLDVPALLDEETMLRMQGLAADAFRAAGCEGLARVDFFLMPDGSLVVNELNTMPGFTPLSMFPQMWAATGVPYGDLVDRLLTLALDRPTGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWC7</accession>
    <name>A0A0Q8UWC7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pyridoxal-dependent decarboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_22595</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the group II decarboxylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896361.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46592">
        <property type="protein sequence ID" value="KRC46592"/>
        <property type="gene ID" value="ASE19_22595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1478871at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016830">
        <property type="term" value="F:carbon-carbon lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019752">
        <property type="term" value="P:carboxylic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002129">
        <property type="entry name" value="PyrdxlP-dep_de-COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00282">
        <property type="entry name" value="Pyridoxal_deC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0456">Lyase</keyword>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3">
        <location>
            <position position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR602129-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="475" mass="49097" checksum="C1677A736224EF0C" modified="2016-01-20" version="1">MSPDEVRARLAALQAEDLPVHGGRTLAYVYDAGLAEVDALAREAVAAFAGSNGLDPTAFPSLLAMENDLVTFARALVDGPSTTVGTLTSGGTESCLLAVQGARDARPDITAPSMVVPETVHAAFHKAAHYFGVRAVVVPVGPDHRADADAMAAAIDETTVLVVASAPSYAHGVVDPVTAIAAAAAARGVRCHVDACIGGWVLPWATRLGRPVLPWTFAVEGVTSISMDLHKYAYAPKGSSLLLHRTPELRRPQYFAHAGWPGYTMLNATLQSTRSGGPVAGAWATVQAIGDPGYLDLTRRALAATDRIVAGLAEVDGLALLAVPDSTLVAAVADGPLDVFTVCDEMAERGWFVQPQLSYDGRAPSLHLAVSAATDPEAFLAALEASVSAALDAGPVPVDEAVVALLQTLDPTTLGDAEFDLLLAAGGLAGDEGELGLPERMAPVNALLDAAPPRLREAVLVAFLDRLARPIAADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXH7</accession>
    <name>A0A0Q8UXH7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_22385</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896325.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46557">
        <property type="protein sequence ID" value="KRC46557"/>
        <property type="gene ID" value="ASE19_22385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="930905at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="6"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="152"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="219" mass="23576" checksum="0360C5BCB05041EA" modified="2016-01-20" version="1">MSDPVRVVVVDDHAMFRRGVSAELATTGAGRVEVVAEAADVDEAVAAVTTHRPSVVLLDVHLPGGGGVEVIRRVNDPEVRFLALSVSDAAEDVIGTIRGGARGYVTKTITGPELVDAIGRVADGDAVFSPRLAGFVLDAFAGAGLSADLASVDEDLDRLTEREREVMRLIARGYSYKEVAKELFISIKTVETHMSSVLRKLQLSSRHELTRWASDRRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXR9</accession>
    <name>A0A0Q8UXR9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_15755</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893543.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50074">
        <property type="protein sequence ID" value="KRC50074"/>
        <property type="gene ID" value="ASE19_15755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="3">
        <location>
            <begin position="203"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="335" mass="35123" checksum="696B0A817DA8485E" modified="2016-01-20" version="1">MDFLFTPEQDEAAELAAQILADKTTNARLKQVEAGGDRFDRELWATLGDAFDWTELDLIMVARVLVECGKRVAPVPLATHAACLTLLGDAADTTKLHAAAVAEERAHLPAAPTVTATADGALTGTKTLVRAGMAADALLVTATGPDGVGVYLVDATADGVERVAQRTSDGDVTALVTLTGAAATRVGDASAPARLGNLLIALAAAEQLGVTEGALRLTAEYAKTREQFGRPIGTFQAVSQRLADGFIDVLGQRLTLWQAIWRLQEGLAADTEVATAKLWAADAGHRIAHTTVHVHGGVGIDLDGEAHRYFTSGKRFEFLFGGATEQALAIGRSFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXS6</accession>
    <name>A0A0Q8UXS6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two-component system response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_15610</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893515.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50046">
        <property type="protein sequence ID" value="KRC50046"/>
        <property type="gene ID" value="ASE19_15610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1020672at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="2"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="124"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="124"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="25017" checksum="7BCB8C3C5FAC9818" modified="2016-01-20" version="1">MRVLVVDDERRLARSLELGLEAEGFAVDVAHDGTDGLWMARENTYDAIVLDLMLPGINGYRVCATLRAEEDWTPILMLTAKDGEWDQVEGLDTGADDYLTKPFSFPVLVARLRAVARRGARERPTALEIGDLVVDTAAHRVRRGDVEIALTAREFAVLSFLARHKGDVVSKRQVLDAVWDGDFEGDPNIVEVYVRHLRNKVDRPFGREAIETVRGAGYRLASDGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXW7</accession>
    <name>A0A0Q8UXW7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cytochrome</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16130</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893607.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50139">
        <property type="protein sequence ID" value="KRC50139"/>
        <property type="gene ID" value="ASE19_16130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="816674at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002397">
        <property type="entry name" value="Cyt_P450_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00359">
        <property type="entry name" value="BP450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0349">Heme</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="403" mass="43751" checksum="3B43C83289BB8C82" modified="2016-01-20" version="1">MFDVFDPALVADPYPALDRLRTAAPVHRVPGTDVHLVSSWALVQEVLAAPETYSSHLRSVLVRRPDGTATTLPMDGGGSVEQVLATADDPTHKLHRSAVLGTIGRRIRALESSVTGQVDRLWDTHFSGDSADWAADMADRLPLALVAELIGLAPEDVPDLLRWAYDSTEMLGGWVDEQRLETTINASFALHDHLARRFDAALDRPGDDLMGELVLACQLDELEVGTAVLVLLQLIGAGGESTAGLLGTAAYRLATDGCLQNRLRNQPDLIDPFLDECLRLESPFRGHYRHVTAPTRLGDVDLPAGSTLLLLWGAANRDPARFEEPDLLDLGRTGVRQHLAFGRGIHFCVGSALARLEATVAIHALLTRTSSFRLDGPADEAAVWVPSIFVRRHAHLRLALSPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYJ6</accession>
    <name>A0A0Q8UYJ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16340</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893643.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50175">
        <property type="protein sequence ID" value="KRC50175"/>
        <property type="gene ID" value="ASE19_16340"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="3"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="127" mass="13812" checksum="5CAB10EB5E63050C" modified="2016-01-20" version="1">MLQDSQVTANIPAADLGRARRFYEDKLGLTPADENPGGLVYRAGGTAFFLYETDQAGKAGHTIAQFHVSDVASEAKDLEEKGVVFEHYDMPGMTWDGPVASMEGMGHAAWFKDSEDNILCLDDAPML</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ02</accession>
    <name>A0A0Q8UZ02_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavin reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15470</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893868.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50340">
        <property type="protein sequence ID" value="KRC50340"/>
        <property type="gene ID" value="ASE19_15470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1681849at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="53"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="204" mass="21990" checksum="0E3BDF061BF9DE50" modified="2016-01-20" version="1">MSSDARETWPHPELIQSWLGDAEVDFELRPGEEVVVHDDPAAQAAARRFRDVLGCFGSGITVITTMSGDEPVGMTCQSFASVSLDPPLVTFIPARTSRAWPMIQRAGRFCINVLAADQEHVSAQMATKGADKFAGISWTPAAATGSPVIDGTLAHLDCTIHAVYEGGDHFIVVGKVEHLEQHGPEAAVTEPLLFFKGRYRTTDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZN3</accession>
    <name>A0A0Q8UZN3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4873 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896395.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46626">
        <property type="protein sequence ID" value="KRC46626"/>
        <property type="gene ID" value="ASE19_21010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1842919at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032371">
        <property type="entry name" value="DUF4873"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16170">
        <property type="entry name" value="DUF4873"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4873" evidence="1">
        <location>
            <begin position="2"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF16170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="79" mass="8456" checksum="342C21D24E51AB39" modified="2016-01-20" version="1">MVLVDGTAHPVTVHLRGAFQPLDGHFHWYGRVAVGTPVDAVRSGSDVTLRTEAGEAAAKLSDKDPWGRFRITGTGTPPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZU7</accession>
    <name>A0A0Q8UZU7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glutamate 5-kinase</fullName>
            <ecNumber evidence="8">2.7.2.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Gamma-glutamyl kinase</fullName>
            <shortName evidence="8">GK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">proB</name>
        <name evidence="10" type="ORF">ASE19_21140</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>ATP + L-glutamate = ADP + L-glutamyl 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:14877"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58274"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Amino-acid biosynthesis; L-proline biosynthesis; L-glutamate 5-semialdehyde from L-glutamate: step 1/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the glutamate 5-kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.11" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896114.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46343">
        <property type="protein sequence ID" value="KRC46343"/>
        <property type="gene ID" value="ASE19_21140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1480250at2"/>
    <dbReference type="UniPathway" id="UPA00098">
        <property type="reaction ID" value="UER00359"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004349">
        <property type="term" value="F:glutamate 5-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055129">
        <property type="term" value="P:L-proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04242">
        <property type="entry name" value="AAK_G5K_ProB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00456">
        <property type="entry name" value="ProB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041739">
        <property type="entry name" value="G5K_ProB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001057">
        <property type="entry name" value="Glu/AcGlu_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011529">
        <property type="entry name" value="Glu_5kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005715">
        <property type="entry name" value="Glu_5kinase/COase_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019797">
        <property type="entry name" value="Glutamate_5-kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002478">
        <property type="entry name" value="PUA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036974">
        <property type="entry name" value="PUA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01472">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000729">
        <property type="entry name" value="GK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00474">
        <property type="entry name" value="GLU5KINASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00359">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01027">
        <property type="entry name" value="proB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00902">
        <property type="entry name" value="GLUTAMATE_5_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 8" id="KW-0641">Proline biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PUA" evidence="9">
        <location>
            <begin position="280"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="175"/>
            <end position="176"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="217"/>
            <end position="223"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="371" mass="38350" checksum="F2296541FC75B98E" modified="2016-01-20" version="1">MSERAVVTGARRIVVKVGSSSLTTAEGGIDPDRISTLVDVLAAARARGAEVVLVSSGAIAAGLAPLGLRKRPRGLAAQQAAASVGQGLLVHRYTEELARHGLTAGQVLLTLDDVTRRSHYRNASQTFTKLLELGVIPIVNENDTVATTEIRFGDNDRLAALVAHLVHADLLVLLSDVDGLYDGPPSRPGTRLIADVRDAGDLAEVTIGSAGAAGVGTGGMVTKVEAASIATGAGIPVVLTSADNAAAAVAGDEVGTLFHATGKRRPTRLLWLRHATEGKGALVLDPGAVRAVVERRASLLAAGITGVQGEFSAGDPVDLVDPDGVVVGRGLVNFDATEIPNLLGRSSKELKRELGAGYEREVIHRDDLVVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1I9</accession>
    <name>A0A0Q8V1I9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14810</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896432.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51365">
        <property type="protein sequence ID" value="KRC51365"/>
        <property type="gene ID" value="ASE19_14810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1033671at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="2">
        <location>
            <begin position="10"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="400"/>
            <end position="425"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="425" mass="45692" checksum="CBD6AE483DA97962" modified="2016-01-20" version="1">MSANSTPPDVFSPGRLGPVTLRNRTIKAATYEGLSHRGRVTQDLIDFHVAYARGGVGMTTVAYLAVDEDGRTDRHQVLWTDEAMPGLRALTDAVHAEGAAASAQIGHGGPVAEARGNRSPALAPSSRVNVIAMNKSQEATTADLRRIVAAHGHAAGRAVEAGFDAVEVHLGHNYLASAFLSPKLNHRDDEYGGGLRNRARLAREIMQAVREAVGDRIAIVAKMNMDDGAPGGFWLDEAIPVAQWLEADGTLDALEMTAGSSLLNPMYLFKGDVPLEEFAGVMPQPIKAGVRLVGHRLLKSYPYTDGFLLEDAKQVRAAVDLPMVLLGGVTSRAVMDTAMAEGFGFVAMARALLREPDLVNRMQADETRRSLCIHCNKCMPTNYTGTRCVLVDRRTTRSASWGRPEGYAAPADGPSGEWDSSHRAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V404</accession>
    <name>A0A0Q8V404_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18195</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893250.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48849">
        <property type="protein sequence ID" value="KRC48849"/>
        <property type="gene ID" value="ASE19_18195"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="129" mass="13238" checksum="B28C55CB7450F046" modified="2016-01-20" version="1">MAIKDQLSKVTDLAATAVHVPATVAGTAVGLAQGTVRTVRSVIAGHHESAPPVPTDVDPVEPVEPHQVEVDPSRPVNVTEELGLDPSPVARPKGPRQQPERPVTGIDAAADPSDADATPADVARALGED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V486</accession>
    <name>A0A0Q8V486_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphoserine phosphatase</fullName>
            <ecNumber evidence="6">3.1.3.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">O-phosphoserine phosphohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">ASE19_16910</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + O-phospho-D-serine = D-serine + phosphate</text>
            <dbReference type="Rhea" id="RHEA:24873"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:35247"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58680"/>
            <dbReference type="EC" id="3.1.3.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + O-phospho-L-serine = L-serine + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21208"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57524"/>
            <dbReference type="EC" id="3.1.3.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 3/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the HAD-like hydrolase superfamily. SerB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.3" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893744.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50275">
        <property type="protein sequence ID" value="KRC50275"/>
        <property type="gene ID" value="ASE19_16910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755462at2"/>
    <dbReference type="UniPathway" id="UPA00135">
        <property type="reaction ID" value="UER00198"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036424">
        <property type="term" value="F:L-phosphoserine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006564">
        <property type="term" value="P:L-serine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004469">
        <property type="entry name" value="PSP"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00029">
        <property type="entry name" value="phosphoserine_phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00338">
        <property type="entry name" value="serB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0718">Serine biosynthesis</keyword>
    <feature type="domain" description="ACT" evidence="14">
        <location>
            <begin position="11"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="13">
        <location>
            <position position="183"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="13">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00009184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00031693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR604469-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC50275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="406" mass="42944" checksum="BBEEFDB0C736DA18" modified="2016-01-20" version="1">MTPHDVPDTLLITVTGTDRPGVTSAVLETLAQSGVAVVDVEQILMRGRLVLGVLVTAPRDSKKLRRAVTETVEALGMNVDIETGTGDNRTRAQDRVHVTIIGGPLKASAMAAIAGRIADCGGNIDKIERMARYPVTAIELHVSGAAPDRLRTLLAADAARHAIDVAVQPANILRHGVRLIVMDVDSTLIQGEVIEMLAQHAGYGAEVADVTERAMRGELDFEQSLRARVKLLAGLDASVLDEVYDAIVVNPGARTMVRTLRRLGYRFAIVSGGFSQITDRLAADLGIHRARANTLEIVDGKLTGEVVGEVVDRAGKARALREFAADLGVPEAATIAIGDGANDLDMLAAAGLGIAYNARPVVREAADTSLNVPYLDTIMYLLGISREEIEAADAEAGIVTPAPPLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5M7</accession>
    <name>A0A0Q8V5M7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09145</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894535.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52598">
        <property type="protein sequence ID" value="KRC52598"/>
        <property type="gene ID" value="ASE19_09145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1239251at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020556">
        <property type="entry name" value="Amidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00571">
        <property type="entry name" value="AMIDASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidase" evidence="2">
        <location>
            <begin position="76"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="146"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="511" mass="52903" checksum="DD39B5E2B0B0E5A6" modified="2016-01-20" version="1">MDLPSRAAIDELASELGLGIPAGDVDFYHAAATGLLGSWAVVDELYDAEVAPVVPERTWSEPTGNGLGAWYVTTELTGAADGPLSGRRVAIKDNIAVAGVPMMNGSETVRGFVPAVDATVVTRLLDAGATIAGKSVCEDLCFSGASHTSKSGPVRNPWDLDRTSGGSSSGSAALVAAGEVDLAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIEQSIDHLGPIAPTVADAAAMLGVIAGADGRDPRQPRGISGDDYVAGLDRLDGGLRIGVVTEGFDQANSDPGVNAVVRSAIERLTAAGHVAEEVAVPWHKHGAALWDVISVEGATWQMIQGNAYGLNWKGAYDPDQMAFYGERWRRDPAAFSETVKLVALGGTWALRNGYGAAYGKARNLEHVLAAAYDDVLASYDVLVMPTLPITASLIPASDAGVEEVVTRALEMVSNTAPFDVTGHPACSIPAGLSGDLPVGLMVVGRMFDDAGVLRAAHSFEQTLGTFTAPHHQKELTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V659</accession>
    <name>A0A0Q8V659_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cytochrome C biogenesis protein ResC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10170</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894707.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52774">
        <property type="protein sequence ID" value="KRC52774"/>
        <property type="gene ID" value="ASE19_10170"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1617952at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003834">
        <property type="entry name" value="Cyt_c_assmbl_TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02683">
        <property type="entry name" value="DsbD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="135"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="213"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="DsbD" evidence="2">
        <location>
            <begin position="23"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="254" mass="26926" checksum="6DC7F43FB1786F8B" modified="2016-01-20" version="1">MGEWFQEQAAAGSLGLAIPVAAIAGLVSFFSPCVLPLLPGYLSYATGLSGADLAAGKASNRRGRMLLGSVLFVLGFAIVFVFYGTAFGSLGTSLRRWQDELQLALGAVLIVLGLVFAGALSLFQRDLRIHKIPAVGLGAAPLIGALFAIGWTPCVGPTFGVILNLTYADGATATRGAILALCYALGLGLPFIVVALAYNRLSRALGWVRRHQVLIMRIGGAFLVLIGVLMVTGWWDHIVQWMQLHLVDTFQVSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V682</accession>
    <name>A0A0Q8V682_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">MerR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10550</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894775.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52842">
        <property type="protein sequence ID" value="KRC52842"/>
        <property type="gene ID" value="ASE19_10550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1661714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00552">
        <property type="entry name" value="HTH_MERR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="2">
        <location>
            <begin position="16"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="81"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="142" mass="15318" checksum="61F28908DE650D12" modified="2016-01-20" version="1">MAVRPPQGPPADDDSVFVISVAAQLSGLHPQTLRTYERVGLITPGRTGGGGRRYSYRDIERLREIAELTASGIGIEGVRRILDLENTVSALRSRNAELAAELDAAHEALRQALTARPAPPTRLPALPQPPAGQSIVVWRRPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6B9</accession>
    <name>A0A0Q8V6B9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">C-type cytochrome biogenesis protein CcsB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_10160</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894705.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52772">
        <property type="protein sequence ID" value="KRC52772"/>
        <property type="gene ID" value="ASE19_10160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="955123at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002541">
        <property type="entry name" value="Cyt_c_assembly"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017562">
        <property type="entry name" value="Cyt_c_biogenesis_CcsA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045062">
        <property type="entry name" value="Cyt_c_biogenesis_CcsA/CcmC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30071">
        <property type="entry name" value="PTHR30071"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01578">
        <property type="entry name" value="Cytochrom_C_asm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03144">
        <property type="entry name" value="cytochr_II_ccsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="83"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="116"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="142"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="182"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="235"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="274"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="300"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrom_C_asm" evidence="7">
        <location>
            <begin position="113"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="341" mass="37040" checksum="7421522532CA02B2" modified="2016-01-20" version="1">MTDANWEALSNQTVAAAGVLYFLALLVHLAEWAALRQPAVAGDLVTAGGGDTVAEGGYVGTATPAAPAGAGEDSPRVAFLGRLGLMLTCLAAAFHFVALVGRGMAADPNRVPWGNMYEFTLTGSFIVAALYLALYRRFRLGWMGPLVVGFVITVLMVAVIWLHDAVAPLSEALNSPWLVIHVVSAATATGAFTLGGIASIMYLVRMRAERRAAAAGRPLGRWLARVPQLDALDRLAYRVHAFAFPVWTFAVLITGPIWAHEAWSRYWNWDPKEVWAFITWVVYAGYLHARATAGWKGRRAAMLALVGVATLWFNFIGINYFSTSSQHSYAGLERPAFLDQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Q9</accession>
    <name>A0A0Q8V6Q9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CN hydrolase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11895</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53084">
        <property type="protein sequence ID" value="KRC53084"/>
        <property type="gene ID" value="ASE19_11895"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CN hydrolase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="31283" checksum="89CB2761859C91E0" modified="2016-01-20" version="1">MQLELRAERDVGAFLAHLEELVAEAAAKGARAVLLPELASTGLLAAIDDHEVTVDSISSDYWTELPRFVDPIVEFLSNLAARHDLTIVGGSHNRVADDGSLRNTAYVLHPDGRVESQDKIHLTPPEHALGARGGDELLVTRIGPFTAGVLICADIQFPELSRHLVSQGVDLIFCPSLTWNRRGVHRVRTGCQARAIENQLYVVMSPLVGSSGLPLDAPMYATGRAIITTPVDRTVGINDGILAEADGAEEQIVVAELDLDLIEASRAAPEAPGLALRRLDLFEKLRASATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6X1</accession>
    <name>A0A0Q8V6X1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11420</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894928.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52998">
        <property type="protein sequence ID" value="KRC52998"/>
        <property type="gene ID" value="ASE19_11420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="312576at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359756" evidence="1">
        <location>
            <begin position="43"/>
            <end position="1034"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1034" mass="110531" checksum="FE6D95D554AB14A4" modified="2016-01-20" version="1">MTDLPAPRLNRRALFGAAAATLGTAAVVGAAGTAAVVPAAQAAPGSAGLPDDLVKAFRKPGAATAAGFRWWWPHGLVDPVEIAREVDQVADAGFGVLEVADVTHSLRARDIDIDVATSGWGTAPWVAGVKAALAQAAKRGVRVDLTVGPSWPAAVPTITPDDDAACTELVHGQAVLAAGATYDAALPEPVVEPASAVTRAELVTVQAHRVTGYVKDSKGVVTSTILDPASYTDLGDHVGGADGEHLTWTAPAEPADATWVLLATWQRGSGQEPEAGPHTSPRAYVVDHFSSRGAQKVIDLWQDRILDGELRALLRAAGGYLFEDSLEIETEATIWTRDFLDVFEARHGYDLRPFLPFVLEKKEKYQFSLAAANPATADNLRTNEVRDDYNIVLSDLYRDEHLRPMQEFARTLGMGIRIQPYGLETDTMQHSAVVDVPETESLGFKNLDDYRIMASGRDLAGHKVLSCEAICYNGAAYNTTWGANTVSPTAQNQALFTINSIYAAGVNHLQVHGFPYAQAPDVTWPGFAAFSPYYNNAIGFGEAWGPRTPQWEHVPGIAAYLARTQLVLQTGAPKYDVAFWRHKGWASTGIGPQWITNNGTKLGWSHSFVSASLLALDGVDFARGRLAPDGPAYKAVVVGPDSLRSNAVTMDIDGARRLLALGRKGLPIVLIGDWSQVTPVGRDDAAATTEVRALVAQIAALPTTRTVVEAEVGNALAALGVVRDVEHADSTVMHVRRVTGDVDLYYLANARHAENRRLNAVNQDLWLTATDRDAVPWLLDAWTGEVTRIAAFERSGDRVRVRVDLVPGQSTVVALAAPGKGVARAVLPVATAGQTVVARGANAALRTTTAGTFELTRTDGRTARVSVARVRQPVVPAAWSLELEDWKPANPADPKDLATAKEVVTLDLPSPQAWSKVSGLEDVSGIGRYRTTVDLGADWTGDDGAYLELGEVNDTFRVRVNGELLPPCDPMDAVVDLGHALVPGANVIEVEVASTLLNRLRTVTPSVYGVATRQSYGLVGPVRLVPYVETVVPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Y0</accession>
    <name>A0A0Q8V6Y0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16875</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893738.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50269">
        <property type="protein sequence ID" value="KRC50269"/>
        <property type="gene ID" value="ASE19_16875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1966659at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="121" mass="11647" checksum="1F1A7F6F349BBA70" modified="2016-01-20" version="1">MDPVTGLSLGRILIGIGALVAPSTTARLFGVDAAANPNLGIFGRMFGAREIALGAVTLVSKGSLRRNLTVVGIAVDGADVASGALEVTAGGLPKVQGGALVAIAAGAVGAGVIALVSNRGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7A6</accession>
    <name>A0A0Q8V7A6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16705</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50241">
        <property type="protein sequence ID" value="KRC50241"/>
        <property type="gene ID" value="ASE19_16705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1969443at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="34"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="210" mass="22788" checksum="ABA254FE16082E16" modified="2016-01-20" version="1">MPKKPKVQAYRPPQQPKPVRSLDERTVRRTGPRFPVGLAIGGIAVVGVATTLIVVLSGGGDDPGNQPQTDKGYDAMVRALEEETGSTLARNVVVYPEYAVIDVPYKPDVPSDEREISYYWDGDLRESTKGTGDEELFDLSRVDSSLLDGMCDQAVALVEEPGDCSLYIAKPDPDDTTPEWIRASVSNEFGQSGSVEFALDGTVIETRPPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7E4</accession>
    <name>A0A0Q8V7E4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16980</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50289">
        <property type="protein sequence ID" value="KRC50289"/>
        <property type="gene ID" value="ASE19_16980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1804797at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024747">
        <property type="entry name" value="Pyridox_Oxase-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12900">
        <property type="entry name" value="Pyridox_ox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="16635" checksum="416D52349660D4D0" modified="2016-01-20" version="1">MSVVTSLERLDQDQCAGLLAAGVYGRLVLLADGRPEIVPVNYTTHAGAAWVRTSPGSLLDRYADGAALLLEVDHVDHERAHGWSVVARGRGERVSDEELRSADLHFPGPPRWVRHDDAAWVRLRWDELTGRRTGSGWDLTHGLPVRRASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7K8</accession>
    <name>A0A0Q8V7K8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12315</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895083.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53156">
        <property type="protein sequence ID" value="KRC53156"/>
        <property type="gene ID" value="ASE19_12315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1332874at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="35005" checksum="1492765C4672BB62" modified="2016-01-20" version="1">MTTATEATYDFDAMLQTIKDKQWSLADIDWDAPGAELVTDEVRAKMKPFMADLVWIEHVGARGFASLAKKAPTPTIKRIYEYFHAEEQKHANAELALMKRWGMLDEDGNPPEPNINVKLAIKVLDDFGDTLPLTGLATLIPLLECALDGALVKFLLDEVHDPVCHEVFRHINSDEARHITVDFQVLELIGAGPLHKLLIESLALLSPQVVIGLIVVFTPLINKMRDNIVAMGLPEQKLYNAVKRFATIGSRGAHTSRIPAYHVLKAQAAMIIDRSSPYHRLLADPMVKLTSFVPAKVLGRPQAWVDELTHEPVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Q7</accession>
    <name>A0A0Q8V7Q7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_13660</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897115.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53388">
        <property type="protein sequence ID" value="KRC53388"/>
        <property type="gene ID" value="ASE19_13660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="933910at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359790" evidence="3">
        <location>
            <begin position="40"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="335"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="182"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="241"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="182"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="241"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="367" mass="36745" checksum="9A72C3D8C2FE8469" modified="2016-01-20" version="1">MTTYSLRSARLRRWTPALLPALVLGLLPLATVVAPPSEADTATRLVGLFRLAPGSCKGGKVTGTYLRMVLPSGTANGPYMSNGDSSCSDQSFTPLGPGADGGLSTVGYQAAPKPAFDSSGNARANRITAPAQYYGTAFTTATAATEPQSGRSVPVPTVTLRGTSLTADLRAFTVSWNKQYFNQGAPKPDGSTPGNTKLAKGSYDPATGRFTLDWASQVQGGPFDKFTGKWHLEGVFVPARSSGSGGSTGGQGSASGGSGSVSTPGAVQPGAAQPGAAPAPGQAPAAGAPLAASPGAVATPGAPLAATDAGTLTAGTPGTRTVTQRHKEWRVSGPLTGLAVGLAVVAIGLIVGTRVLERRASRKVAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7U2</accession>
    <name>A0A0Q8V7U2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12805</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895842.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53236">
        <property type="protein sequence ID" value="KRC53236"/>
        <property type="gene ID" value="ASE19_12805"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="203"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="231"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="27178" checksum="59FDDADB6BB0531A" modified="2016-01-20" version="1">MASDALRGTLPFKAMSTFGDFYSFVGKVFRTMFTTRFRFAEFISQAWFVTTVSFGPALLVSIPFCVVIIFQVNQLLIQIGAVDLAGAGAAVAVVREIGPIVSVLVVAGAGATAICADLGSRKIREEIDAMVTLGIDPIERLVVPRIVASTLVGVALNGMVTVVGLVGGYFFSVVLQGATPGLYLSDLTLLVGLPDFLASEAKAAIFGLLAGLTACYLGLNAKGGPKGVGEAVNQTVVFAFMLLFAANSVISALFLQIKLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7U8</accession>
    <name>A0A0Q8V7U8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897010.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53493">
        <property type="protein sequence ID" value="KRC53493"/>
        <property type="gene ID" value="ASE19_14240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="768211at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="242"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="288"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="322"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="359" mass="37615" checksum="4DDC656B3DB64A26" modified="2016-01-20" version="1">MYLALRELRFARGRFALVGTVIALVAMLTTMLSGLANGLVDDGISGLRRLPMTDLVLQQGSAETFSRSTLTDADLAPWEGRDDVDASPLGVSFVNARTDGGKTIDLALYGVPAGSFLAPRPDAEGALEGTPGLVLSQELEDEGIEVGDELTVVGVDERLPVLGFTYAGSYGHVDIAFTSLETWQHLLYGDNAKGRFSAIALRADDDTTLEAADGTEVVTKEEAYAGSPGYAGETQTMSMIRWFLLVISALIVGAFFIVWTMQRSRQIALLKALGASRSYVARDALGQLAVVLVLATAVGGGVAFALGGLIDGTAVPFRLALVPAVSALVLLVVVGLLGCLAGIRRVVAVDPAMALRAAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Z2</accession>
    <name>A0A0Q8V7Z2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glyoxalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14120</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897033.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53470">
        <property type="protein sequence ID" value="KRC53470"/>
        <property type="gene ID" value="ASE19_14120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2035522at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="205" mass="20965" checksum="AB2017FE2FAA9573" modified="2016-01-20" version="1">MNITSLTIETPDPAAAEAFHTAAFGADLPLAFRACDVPTDGFRGFHISLITAQPADVDALAETAIAAGAEVIKPVTKSLWGYGGVLRSPDGTIWKVVSESKKNKGPASRTVQGVVLLIGADDVAASKAFHVERGFGVAKSFGKKYVEFEAGGGAVTLGLLSRKALAKDAGVPVDGSGSHRLAISGGTTAATDPDGFAWEPAEVSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V873</accession>
    <name>A0A0Q8V873_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14560</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896953.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53550">
        <property type="protein sequence ID" value="KRC53550"/>
        <property type="gene ID" value="ASE19_14560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="8"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="179" mass="19023" checksum="48324BBBDFE5F1ED" modified="2016-01-20" version="1">MTWVDRRTPAVERILDAAGALFAEAGVDAVSMAQIAASSGCSRATLYRYFPDRPALQLAFVQREAVRVGALVAADVASSKGDPLVEGVLAALRQVRANPALLAWFGDRDAAHTADLAQGSEVVEALGLSMAADAEAARWLVRVIVSLLTVPGGGEAEERRLVERFVAPGVISSDIRRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8A1</accession>
    <name>A0A0Q8V8A1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13620</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897123.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53380">
        <property type="protein sequence ID" value="KRC53380"/>
        <property type="gene ID" value="ASE19_13620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1345207at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="249" mass="26328" checksum="5F6789175DE58BB9" modified="2016-01-20" version="1">MPTASRRTLLVAATLAPLLTAVGCGEDEPDPVVDEERPLTGEEAELLALTRFRLHQEKAVPVRMELPGADGSTIEATLALAAGTAWGTATFADAPSRVIAWTTHVVATAARPDDGRPAPADADWTTRAMSTDVVQDLFLLLALTLGSDRPENPVLLQQGSARHLRRDEVDGTAVTVMSGPRPADEGAAARGSRTRYWVDDEGGLRRFEAYLGAADRSFATLTRVGAVPEVPELDVRAAQVLRIAGGATG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8A5</accession>
    <name>A0A0Q8V8A5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10465</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895173.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53621">
        <property type="protein sequence ID" value="KRC53621"/>
        <property type="gene ID" value="ASE19_10465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1178576at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043737">
        <property type="entry name" value="DUF5682"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18934">
        <property type="entry name" value="DUF5682"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="740" mass="78598" checksum="C1EDB5ADEAB8174B" modified="2016-01-20" version="1">MSASPAPTPRVEVLGIRHHGPGSARSVAGALDELAPTAVVIEGPPELDALTAYVDEGLVPPVAGLAYVTAEPWRAAFYPMAAFSPEWVALRWAVEHDVPVRFADLPAANALAPAEGDDAEAEPERTDPITLLATTAGYDDPERWWEDAVEHRAPSSLARFALLREAMTQARAAAPVSADNLRREAAMRKVIRAVVKDGHERVAVVCGAYHAPVLDPATFPSQSADNKLLAGLPKVKVTATWAPWTAGRLAYASGYGAGVTSPGWYQHLFACWAEGRPDDVVPGWLTRVARALRDDGLDAAPATVVEAVLLAEALAAVRGRPSAGLDELMDASQTVLCGGSAVPLVLVQRRLVIGEELGQVPDGVPLVPLAEDLARTQRSLRMKPSPTPTSVTLDLRKEAQLGRSLLLHRLTLLGIPWGVPGDAGRTTGTFKEAWDLEWQPEFAVALIEAGLLGTTVVGAAEARVREAAAEAKDLATLGRLVEQALVADLPGALATVVDSLAAATAHQHDTRSLLDAVEPLARTQRYGDVRRADVGRVREVLQTVVVRACVELRSACAALDDDAAAALRASIDAAQRGIALVGVGRDRWREALAGVAADDRIHGAVAGRVNRILLDGGHLTSGRAAERLSRQLSRGSSPTHAAAWLDGFLDGEAVLLLHDPTLLALVDTWLGEVDESVFEDLLPLLRRTFSRFAPAERRQVATRVRHLGSEHVDAARDLDLAAGRAAALRVAGLLGLEVTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9B2</accession>
    <name>A0A0Q8V9B2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07590</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895365.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53934">
        <property type="protein sequence ID" value="KRC53934"/>
        <property type="gene ID" value="ASE19_07590"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="188"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="227"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="260"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="274" mass="30854" checksum="15FA8D96711F0C59" modified="2016-01-20" version="1">MKKIKIAGQEIEDGVLTLEQWDAWRKIPGIQPGHRQGSPVPDVLSDAPEFAELHRVRQRLIESEQQNGEAAASMDARNRERIAQHRRDLAAATLQGLEAPPRPELEEWQGLEHAVDFFTGYHVILEAVERHLLRERADDWRDHIRRKARKTHVKRAQAQQALAEAEELMVPFDAARREVDAAVERAARRGRGSSAEPAFGESVEEPAAAVDPNPIPANVPGEPVGASDRVVRDRRRDESDSLEALPSELQDVTEGLLQQRIDDNPRRRPRLGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9D6</accession>
    <name>A0A0Q8V9D6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07220</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53866">
        <property type="protein sequence ID" value="KRC53866"/>
        <property type="gene ID" value="ASE19_07220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="80" mass="8792" checksum="50BBD31D8F581231" modified="2016-01-20" version="1">MSSRTKMTIFWLLFGSSIVLAVFPPLYLAGSGIDTPILGVPFSVAYWIFDALLATGAVWLLWIFENIRGEVGEEPEEVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9M3</accession>
    <name>A0A0Q8V9M3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06770</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53796">
        <property type="protein sequence ID" value="KRC53796"/>
        <property type="gene ID" value="ASE19_06770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="34"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="415" mass="44167" checksum="895346AA058D7F5B" modified="2016-01-20" version="1">MATHLRNRSRPWLVGGLVMLLAIAAFRFAADDEPYVIDALTPAADGLVTGSVVRIGGQDVGKVADIRVEGDQARLRLEINPDSGPLHAGTDVHVRWNSVVGRRYVDVEPGPTDNPVLPRGKLVRGTTERVELDDIAAMLDGPTRAKVQQLVGQLDATLRRSDQDLNTTLDQAGPFVKGLGEVLEGVGKDGDAIRSLIANLHEVTAALSTRDADVAGTVTDLRALVGVAVRHADQLRTALDEVPATLTTADSLLSKVPGAVDETVPLLEDLQPAVAKLPSVARRLDPVLQDLRPVVAELRPTLNAVDRLLEQTPGLLKIATQTIPDVQTALTQLQPAVSFLRPYTPELIGFLTNWASLFSAKNAAGHFGRAMIPVSASSFNSNPGILPPGMSQVQEPAPGSLINQPWTDANGDGIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9U1</accession>
    <name>A0A0Q8V9U1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Folate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_07170</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895292.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53860">
        <property type="protein sequence ID" value="KRC53860"/>
        <property type="gene ID" value="ASE19_07170"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984573at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045179">
        <property type="entry name" value="YgfZ/GcvT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017703">
        <property type="entry name" value="YgfZ/GcvT_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22602">
        <property type="entry name" value="PTHR22602"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03317">
        <property type="entry name" value="ygfZ_signature"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0809">Transit peptide</keyword>
    <feature type="domain" description="GCV_T" evidence="3">
        <location>
            <begin position="29"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="320" mass="34361" checksum="71266C97E8C635D8" modified="2016-01-20" version="1">MTSTPSPLLALPGAVAGNGIDAPVAAHYGSLFGEQVTLEAGEGFVDLSHRDVLRVSGPDRLTWLHSLTTQYFEGLPAGRWVSGLILSPQGHVEHAFTGVDDGEAFTAHTEPGRAAALIEFLERMKFMMRVEITDVTDELAVAWRPGRYDLVPRDQLTAYAEAAGPAAGLWAFEALRIARGEPRLGIDTDERTIPNEVGWLADASAPEWAAVHMDKGCYRGQETVARVHNLGRPPRRLTLLHLDGSENRLPAAGTPVVPADGGRDVGFVGSSARHHELGPIALAVLKRNTDLAAPLVVDGIPAAQEVVVDPEVGLHFRPQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA33</accession>
    <name>A0A0Q8VA33_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15740</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893540.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50071">
        <property type="protein sequence ID" value="KRC50071"/>
        <property type="gene ID" value="ASE19_15740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1261526at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="217" mass="22087" checksum="320CCDA95B153FA2" modified="2016-01-20" version="1">MTRNVLIAGAGPGVSGSLARLYAAEGATLALLGADEEVLATLAAEVAVAGGVAETAVVDLTDEAATRSVVTRLAEKLGHVDVLHFNPSAYREKDPLSLSVDELLADVRLGVGGLLPLLQAARPFMGPGGRVSATGSMAADSPWFGAASLGVQKAGLQNLVRSIDATVKGDGIRAASVTVRGMLAKEGPFAPDNVAKALRAAVDQDEASWQTEIAYVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA70</accession>
    <name>A0A0Q8VA70_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54054">
        <property type="protein sequence ID" value="KRC54054"/>
        <property type="gene ID" value="ASE19_08290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1908117at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="114"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="139"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="169" mass="17276" checksum="2C5202A769502CF9" modified="2016-01-20" version="1">MAEPAPKPTPKPTATPVEVIPEPVDPAAVEDAEIASLGSGGPLLTAYRAAALSGLVVGAGMVVLTWLSLRGCEAVRGTSSCGGGPGFLLLVATFAVCVLLGSALLRTFQIPDPGSSSFLAVGLVAVVALLFLIDHLDHWSMLIVIPVLSIGGYLASVWVTKTFVEPVDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA75</accession>
    <name>A0A0Q8VA75_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_08385</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895645.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54213">
        <property type="protein sequence ID" value="KRC54213"/>
        <property type="gene ID" value="ASE19_08385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1181903at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="1"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="234" mass="25641" checksum="BFB9AC5389A376F7" modified="2016-01-20" version="1">MEIDEVSRVYGSGQTAVHALRPCTATLRERDFVAVMGPSGSGKTTLLQLAAGLDRPSAGEVRLRGDSLAQMTVREMTRMRRREIGFVFQFFNLVDGLDAVENVALPLRFDGMPGREARARADEYIEMVGMGHRRLHLPSQMSGGEMQRIAVARALAPRPSVLIADEPTGNLDGANSREVLSLLRDLAKKNDVAVLMATHDAGTVRYADRLWRLDDGTLVEEAVLDEDADPPSRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAE2</accession>
    <name>A0A0Q8VAE2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidoglycan glycosyltransferase</fullName>
            <ecNumber evidence="1">2.4.1.129</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_08270</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n)-di-trans,octa-cis-undecaprenyl diphosphate + beta-D-GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate = [GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n+1)-di-trans-octa-cis-undecaprenyl diphosphate + di-trans,octa-cis-undecaprenyl diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23708"/>
            <dbReference type="Rhea" id="RHEA-COMP:9602"/>
            <dbReference type="Rhea" id="RHEA-COMP:9603"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60033"/>
            <dbReference type="ChEBI" id="CHEBI:78435"/>
            <dbReference type="EC" id="2.4.1.129"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.129" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895484.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54052">
        <property type="protein sequence ID" value="KRC54052"/>
        <property type="gene ID" value="ASE19_08270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="652304at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008955">
        <property type="term" value="F:peptidoglycan glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001264">
        <property type="entry name" value="Glyco_trans_51"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036950">
        <property type="entry name" value="PBP_transglycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00912">
        <property type="entry name" value="Transgly"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <keyword evidence="9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="20"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="domain" description="Transgly" evidence="11">
        <location>
            <begin position="77"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="10">
        <location>
            <begin position="364"/>
            <end position="629"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="748"/>
            <end position="780"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC54052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="780" mass="83367" checksum="A422E8D32FCA39E5" modified="2016-01-20" version="1">MSRTRFDGLPPGKILSHLGVMLLVSAVLGVVVSGLAIPFAGVVGFTARNVAESVDDLPQELETEQLPQRTEIQDKGGKVIATLYDQNRVNVPLRQISRTMVEAIVAIEDYRFYQHGALDLKGTVRALFTNQAAGGVTQGGSSITQQLVKLTLITQANGDEEAIKAAKEDSYGRKLKELRYAIALEKRHSKDWILERYLNTAYFGDGAYGVQAAAQHYFSTNAKDLNLRQSAMLAGLVQSPEAYNPTRNAPQAKVRRNVVLERMAQLSVITQAQADKAVETRLGLKVQDQPNGCVNSRAQFFCDYVVNWLKTDPALGETPEERERMIFNAGLTIKTTIDMRFQRAAQDSVSAHVYKSDLAIGGLALIEPGSGDVRALAQSRPMGKGKGQTFLNYTVPTRYGDAAGFQPGSTFKAFVLASAINQDIPLTRTFPAPSERTFAENSFETCDGPYQSGGTWPVHNSTSASSNPNLYEGTQKSVNTFFAALEQETGICEPWKLARRLGITELTKRAQVPSFTLGIADVSPLEMAEAYATFAAKGVHCTARPVTQITDAEGTVLKEYDKDCTQALPSPVANAVNDVLRGVIEGGFGSALAPGQPAAGKTGTTTGNQAVWFSGYTPNLAGASVVAGVNRAGHPESLDYKSVGGQTLYTSSGSTTAGPIWGDAFKTIAQWLPDDDFERPSSTDVAGLLIPVPSVGGLTYDEAADRIEAAGFTAVRGGSRTSGYRRGLVAYAYPDDRAGAGDTITIYISSGPKARKPKGKPRNGGGNPPPDDGNNGRGNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VB59</accession>
    <name>A0A0Q8VB59_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10760</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894815.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52883">
        <property type="protein sequence ID" value="KRC52883"/>
        <property type="gene ID" value="ASE19_10760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="222755at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359859" evidence="1">
        <location>
            <begin position="26"/>
            <end position="869"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="869" mass="86405" checksum="CEC408CDE911198D" modified="2016-01-20" version="1">MRRLIVSFALGLAFVVPSALTHFSDAPLQEARCPSGDGLDWVLPGACEHADEAPPGVDVTEPVPTAELKERDGGGAEAYAAAQELGVPAPAQAAATSPAVTCEGDGSAGYRTQAMYVVEAGRTNRFSALQASFQLWAAGVDDVVNRSAALTGGVRHVRYVTEASGGSCVAKVLNVTVPAGSLASFNSSIAAIQALGYTEPSRKYLMWTDATVLCGIASMYPNDSDSQGNPNNGSYAQYARVDSGCWGFGDGATQHSVEAHELLHTYGGVMSTAPHGTRAGHCWDESDTMCYADGGGFAMQQVCPAEREYLFDCNNDDYYSTYPDPGSWLDGHWNAADSRFLIGGGNGSGGGTPGAPTVLGATIAVNNPAVPGLATQASVTPALPTGRTVASVQWKSPKADCSFSTPTEVQTEVTCSATSSTATTVTATVTDSTGATKAVTSPLTFATGTTRAVSIALGAAGQSPADGGTAGVCTGAAFPLNATVLDTASGRPVKGLATALTKQTTTMTAPASAGSPVTGATGVATQPQTATVSTTYRGRTAAGNVYAAAGPATLVAAPATCTTSLTAELAADRVWYGDTVAVTGDLSATSGAATVVPSGVSLAVRLTTDAGKGLSLGTVKTAADGSYSFAAKPTANGTISVALTAGTSYTGGAATAGTITVDVPDTLITGAVDKTSVAYGQTVTVTGTLRRDAGGTTSPLASKSVSVYVTPAGGTAVKVGAASTKADGTFSIAVALKVSGTLSVSYAGASGQPAAKVDVGAVTAVSWSTAVTASASSSTVAAGGSVTLSGSVSRTWSGATSPAPAIKVKVTFRATGSSTTTVVSSVTTTTSGTFTAKVYPKASGTWTLTVSDVAGYVSANSSPLTITVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC15</accession>
    <name>A0A0Q8VC15_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895665.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53203">
        <property type="protein sequence ID" value="KRC53203"/>
        <property type="gene ID" value="ASE19_12620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1962250at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009937">
        <property type="entry name" value="Phage_holin_3_6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07332">
        <property type="entry name" value="Phage_holin_3_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="135" mass="14670" checksum="C5DF606B76F0D30F" modified="2016-01-20" version="1">MAIEPLREEPTIGRLIKDAQTDFSTIMRKEIQLAKAELKVSVTAGGVGLGLVGAALFLLVLAVIMLSIAFAYLIHWNGSGLDLHWAFLIVFGAYVLLAGLLLFLALRSFKRVKAPERAIEQGKEIPRALKGQAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCD5</accession>
    <name>A0A0Q8VCD5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04655</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54772">
        <property type="protein sequence ID" value="KRC54772"/>
        <property type="gene ID" value="ASE19_04655"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019639">
        <property type="entry name" value="DUF2505"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10698">
        <property type="entry name" value="DUF2505"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="155" mass="16847" checksum="8BF74CB46964A558" modified="2016-01-20" version="1">MHEMVYDASLIEVAGMLSDPEFRQEVCRNQRATAYTAEIEGDANEKAVRVEMTQPTDRVPSFAKKIVGDTVTIVQTEAWSSASHADIHVTIPGKPGEMKGTAVLLEKDGVTTETVTLDITVKIPLVAGKVEQLLAKLLGSALRAEERTGKAWLAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCL7</accession>
    <name>A0A0Q8VCL7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GntR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05490</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54908">
        <property type="protein sequence ID" value="KRC54908"/>
        <property type="gene ID" value="ASE19_05490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1024978at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="2">
        <location>
            <begin position="21"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="483" mass="50878" checksum="1DEA0D6EEA188EF5" modified="2016-01-20" version="1">MVQATLAAGRLATLVDGFDRSPAYVGLADALRELIGDGRIGYGTRLPSERDLTEALGVSRTTVTRAYALLRETAYAEARQGSGTFTRLPGGRIRALDRALWPSDVGNGVIDLVCAAATAPPGIAALYAEAAAELPAHLGSHGYFPAGMPALQAAIAATYDARGLPTDPDQVVVTPGALAATAVIGTALAGPRDRVLMESPTYPNAVQALRSGGGRLATITLDPSGWDLDAVGSALARHRPRLVHVMPDFHNPTGLVMTDKERASYARLLARHDATAVVDEAHHLLHLDDVAPVRPFASYSKDAICVGSASKSVWGGLRLGWIRAPHALVDRLTRARVGLDLGAPVLEQLVLTRLLTTGYDDLVEVQRRRLREQRDALVGALHERLPDWTFRVPSGGMALWCHLPAAGATALSTEAERHGVLLAPGPSFAPEGGLDRYVRLPYAIAAAELVEAVDRIADAWAVVTSGRGGSPAPTSGSEPVLVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCN8</accession>
    <name>A0A0Q8VCN8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04825</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894282.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54799">
        <property type="protein sequence ID" value="KRC54799"/>
        <property type="gene ID" value="ASE19_04825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1395601at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010539">
        <property type="entry name" value="UCP009160"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41282">
        <property type="entry name" value="PTHR41282"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12811">
        <property type="entry name" value="BaxI_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009160">
        <property type="entry name" value="UCP009160"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="115"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="182"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="215"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="256"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="279" mass="29323" checksum="83F496661A0159C1" modified="2016-01-20" version="1">MQSNNPVFRRSEEFTRSGAGAYQQFGQPQYGGQPGYPAPPAPVQQSGRMTIDSVVQSTAITLGITIVAAAATWFLTPDIDSTEAISTLSGIMIVGAGAAFILSLVNSFKRVISPALVMAFALAEGVALGGLSKFYDAAYGSDASGMGGIVVQAVVGTFAAFGGTLAAYKFFDIKVGQKFRTFVIAAMFGMVALSLMEVVLGLFGNGVGLFGDGKLGLLFAVGGLVLGVFMLILDFDFVEQGIANGLPERESWRASFGLLVSLVWIYTNLLRILAILQQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCS0</accession>
    <name>A0A0Q8VCS0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Endo/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05035</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894250.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54831">
        <property type="protein sequence ID" value="KRC54831"/>
        <property type="gene ID" value="ASE19_05035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1428740at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359914" description="Endo/exonuclease/phosphatase domain-containing protein" evidence="1">
        <location>
            <begin position="20"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="57"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="435" mass="47713" checksum="AB25127FED8D9D1F" modified="2016-01-20" version="1">MTALGLALVLLPAPGVRLAATDTSALRSDVPTSAPIRIVQANIKSRMATAETKADIARAYAQKPDFITFNEVTYRPDSWLVRDGYAMWRTPGNFTGETPVVWNTARWNMVAQGTWLISNKRRVQPSNEFERGIRYANWVSLQSNLGERISVVSTHFAPRSGYTVDLIEPSLKRLGQLVKTLRAHGPVLVGGDLNVNYKSRTDYPRSLMASLDMAPVYDVTGTALSTGDYRGSTIDYVLLSSVSQFAVDRAWVQELNSDHRLLGADVKLTGTSAAAFTPGTVRSNPTTSPRAIAFLVIKSINLAPEGAVVHLASRRLDLPGIEQAIIKARQRGVHVQLLTSGLRMSAVEKRLVKLLGTRVRAKSWVAHQRAWFENGLPAASSMVSASGGIRALRIDANRALTRESYTRVTRATVTIDKPSYDRLFVPFLRAAGRSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCU5</accession>
    <name>A0A0Q8VCU5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_05945</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FAD-binding monooxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894090.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54984">
        <property type="protein sequence ID" value="KRC54984"/>
        <property type="gene ID" value="ASE19_05945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="324612at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004499">
        <property type="term" value="F:N,N-dimethylaniline monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000960">
        <property type="entry name" value="Flavin_mOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020946">
        <property type="entry name" value="Flavin_mOase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00743">
        <property type="entry name" value="FMO-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000332">
        <property type="entry name" value="FMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00370">
        <property type="entry name" value="FMOXYGENASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="442" mass="49293" checksum="01BE3A00D1ECEA45" modified="2016-01-20" version="1">MSGPTVAVIGAGISGLTMSKMLADYGVDFTTFESSDRVGGNWAFGNPNGHSSAYRSLHIDTSKHQLSFRDFPMPDEYPDFPHHTQIKDYLDAYADAFDIRRRIEFENGVVRAERRTGGGWDITDQAGRTRPFDVLLVANGHHWDPRFAEFPGEFTGEVIHSHAYIDPWTPLHLMDKRILVVGIGNSAADITVELSQKAMRNQVTLSTRSSAWIVPKLMFGKAADMNYRTSPHLPLAWQRKLMQMGQVLTASDPTLYGLPTPNHKFFEAHPTQSGELPLRLKSGDVTPKGNVARLDGETVHFEDGTSADFDVIIHATGYNITFPFFDPAFISAPDNDIRLYKRVFMPGVDDLAFVGFAQATPTLFPFVECQTRMVAAWLVGRYAPPSIAEMERVIDEDTQKYTGHMVPSARHTQQLDYFVYEHDIRVKEIPAGLARAAGAAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD07</accession>
    <name>A0A0Q8VD07_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phenylacetaldoxime dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09110</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894529.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52592">
        <property type="protein sequence ID" value="KRC52592"/>
        <property type="gene ID" value="ASE19_09110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="515450at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025702">
        <property type="entry name" value="Haem-containing_dehydratase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13816">
        <property type="entry name" value="Dehydratase_hem"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="353" mass="39702" checksum="0C39957202E0EF8E" modified="2016-01-20" version="1">MESAIDTHLKCPRTLSRRVPDDYQPPFPMWVARADASLQQVVMAYLGVQYDDPERRGDALAALRTIVGTFDGPDGPVHHDLTHHVDNRDHHNLMVVAYWADPAAYGRWLRSEAVAGWWESDDRLHDGLGHFREVVAPRVDQFETLYAFQEQLPGVGAVMGGISGDINEHGYWGSMRERFPISQTDWMQSNGGLTVVEGDPAAGGRVVVRGHDNIALIRSGQEWIEAGEEERSLYLDEIQPTLEAGMDFLRDNGESVGCYSNRYVHSIDLDGNPIDESYNIGHWSSLDKLERWAESHPTHLRIFTTFFRVAEGLDKLRLYHEVSVSSGSEQLFEYVNCHPGTGMLRDARVASNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD14</accession>
    <name>A0A0Q8VD14_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Benzoylsuccinyl-CoA thiolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06095</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894062.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55012">
        <property type="protein sequence ID" value="KRC55012"/>
        <property type="gene ID" value="ASE19_06095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1756670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002878">
        <property type="entry name" value="DUF35_OB-fold_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022002">
        <property type="entry name" value="DUF35_Znr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12172">
        <property type="entry name" value="DUF35_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01796">
        <property type="entry name" value="OB_aCoA_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF35_N" evidence="2">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="OB_aCoA_assoc" evidence="1">
        <location>
            <begin position="60"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="16056" checksum="9F748B1D316C5847" modified="2016-01-20" version="1">MTTSTPVIEGWFTTGEEPRLLASRCTACSNVVFPPVSGEAGAAAFFCRNPACDGEEHATVELSRRGTVWSYTDAQYQPPAPYLSLSDPYEPFALAAVELPEGLVILGQVAQGYGVADLRVGSEVELVVETLNVDETGERTIYRWKPVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD70</accession>
    <name>A0A0Q8VD70_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">50S ribosomal protein L14</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rplN</name>
        <name evidence="6" type="ORF">ASE19_06535</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 5">Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L19. In the 70S ribosome, L14 and L19 interact and together make contacts with the 16S rRNA in bridges B5 and B8.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the universal ribosomal protein uL14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_011757324.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="SMR" id="A0A0Q8VD70"/>
    <dbReference type="EnsemblBacteria" id="KRC55084">
        <property type="protein sequence ID" value="KRC55084"/>
        <property type="gene ID" value="ASE19_06535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1799923at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.150.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01367">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036853">
        <property type="entry name" value="Ribosomal_L14_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000218">
        <property type="entry name" value="Ribosomal_L14P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005745">
        <property type="entry name" value="Ribosomal_L14P_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019972">
        <property type="entry name" value="Ribosomal_L14P_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11761">
        <property type="entry name" value="PTHR11761"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00238">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01374">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50193">
        <property type="entry name" value="SSF50193"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01067">
        <property type="entry name" value="rplN_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00049">
        <property type="entry name" value="RIBOSOMAL_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="122" mass="13344" checksum="E3D0FFFD9EB563FB" modified="2016-01-20" version="1">MIQQESRLKVADNTGAKEILCIRVLGGSGRRYAGIGDVIVATVKDAIPGGNVKKGDVVKAVVVRTVKERRRPDGSYIRFDENAAVILKNDGEPRGTRIFGPVGRELREKKFMKIISLAPEVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDB1</accession>
    <name>A0A0Q8VDB1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09640</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894623.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52685">
        <property type="protein sequence ID" value="KRC52685"/>
        <property type="gene ID" value="ASE19_09640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1859412at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037079">
        <property type="entry name" value="AF2212/PG0164-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015018">
        <property type="entry name" value="DUF1905"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08922">
        <property type="entry name" value="DUF1905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="102" mass="11351" checksum="BFCC61C2BF168FE5" modified="2016-01-20" version="1">MTDHEFTAELWRWTARDEESGGAWFFVSLPFDASDDIEARRVPGKGFGSVRIEVTIGSSTWRTSVFPSAEEKTYVLPVKKAVRTAEGLTEGGPCRVRLRTVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE05</accession>
    <name>A0A0Q8VE05_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10930</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894844.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52912">
        <property type="protein sequence ID" value="KRC52912"/>
        <property type="gene ID" value="ASE19_10930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1239251at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020556">
        <property type="entry name" value="Amidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00571">
        <property type="entry name" value="AMIDASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidase" evidence="1">
        <location>
            <begin position="31"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="467" mass="49102" checksum="53D4AD6BCDB64A35" modified="2016-01-20" version="1">MNHPATVSLTPDSSARDQAAAVRSRQISARELLDLHLERIAERNPQLNAIVSLDEERAREGAAAADEALARGEQVGPLHGLPFAFKDTHQVGGWRTTWGSPLYADHVPDRDELIVERVRAAGAVTIGKTNVPEFAAGSHTFNTVFGTTLNPVDPTRSAGGSSGGAACALASGMVPLADGSDMGGSLRNPASFCGVVGLRPSLGRVPEWPQLNHWETTSVGGPMARNVGDLALLLSVLAGPDPRAPQALGDPGAVFAGPAPADLRGLRVGLSVDLGAAFEVDHEVARVVEEAGRALAAAGAVVRSSYPDLGLADDTFRTLRAWHFQARLGPLLAEHPTSFKASLADNIRAGASLTGADVARAYAQRTALSETMRAFFTDHDLLVLPVSQVPPFPADQEFPTTINGRPMASYLDWMRSAYFITVTGCPAISVPAGTTADGLPVGVQLVAPHGADLRLLQVARAFEWLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE43</accession>
    <name>A0A0Q8VE43_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD-dependent dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895339.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53907">
        <property type="protein sequence ID" value="KRC53907"/>
        <property type="gene ID" value="ASE19_07435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1558163at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="1">
        <location>
            <begin position="8"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="327" mass="35801" checksum="DC0546757A2C9928" modified="2016-01-20" version="1">MNAGPVDVLVAGGGGFIGGHLVADLLAQGKTVRSVDVKPLDEWYQVHPDAQNSVGDLSLLDQAEAATQGAREVYMLAADMGGMGFIENNKALCMLTVLTSTHMLQAAQKYDVERYFYSSSACVYAADKQTDPSVTALKESDAYPAMPEDGYGWEKLFSERMARHFREDFGLTTRMARYHNVYGPEGTWTGGREKAPAAVCRKIAEAVISGKHELEIWGDGEQTRSFMYIDDCVKGSQMILASDHVEPINLGSAELVSINQLYSIVEDIAGITCKRNYDLSAPQGVRGRNSDNTEINEVFGWEPSISLADGLAKTYAWVYDQVKRAQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEM8</accession>
    <name>A0A0Q8VEM8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PadR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11485</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53009">
        <property type="protein sequence ID" value="KRC53009"/>
        <property type="gene ID" value="ASE19_11485"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005149">
        <property type="entry name" value="Tscrpt_reg_PadR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03551">
        <property type="entry name" value="PadR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PadR" evidence="1">
        <location>
            <begin position="13"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="209" mass="23172" checksum="EF61525DA53B031B" modified="2016-01-20" version="1">MAAHDTRMLLLGAVALFEPVNGYQIRRELLSWSVDDWANLQPGSIYNGLATLTRQGRLVRHDLEDGGREVAVYELTESGRAELERLVTAGLEDVGVVDRKGFSAAFGLLPLVPHEHALRSLVRRRVALEQLVARLADPGGPAEAPPHALRGVVLWLDLAVAELAWLRETIELMKSGSLRLDSSTWVPPADDPGWQMNADRERYRTLLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFX4</accession>
    <name>A0A0Q8VFX4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Protein kinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_13950</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53440">
        <property type="protein sequence ID" value="KRC53440"/>
        <property type="gene ID" value="ASE19_13950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="912616at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="428"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="3">
        <location>
            <begin position="6"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="366"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="486"/>
            <end position="505"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="631" mass="65907" checksum="BF34E7BD0E555528" modified="2016-01-20" version="1">MLAGRYRLIDLLSESGGGRFWRAHDAVLERFVALHVIAEDDPRAPGLVAAARTSAGVLDPRILRVLDAEQEDGRCFVVNEWGTGTSLDILVTHAGPLGPRRAAWLVADVAAAIARAHAAGVTHGRLNPENVLIDRYGSVRLIGMCVDAALHGLPAGDVQGDLEDLGGLLYCALTGVWPGPSGSIVPAAPRENGAFLSPRQVRAGVPNQLDLLWREFECTGVHVRRRMLGSEHPDVSSARGIAEELLAFVGDPTGMPESLAQAIPQVNELRPVWLPAVADPLPHDSSRDDIPVVPPAVEADIDLDRVDLSDPPVVPAAGTGVTDLPTEPGLPVFGAGEDDVQWLRTRSTPPPPPPPFEALPERPLFASEGTRRPRPDLGPGPAGNGWPAALPDDAGAGGTGYWPWDTDGGPPGAHDPDTTDDAVPGRSWLRLAMAVALAVLLLVAIAIAFNLGRGRNALGGGGSEEEPSVAPSSSAGQPAVIKTVTAKDFDPLGQDGEENSGDVRYLTDGKAGTRWRTSTYRDQLGPPPGLKTGVGILLDLGSVQQVSSVDVRLGEGQTTIELYAATETPTAAPTGKPVARTTGSGPVTLAPADGQAVGARYLVLWLTSLPEVDDGDFRGEMAEVVVRGGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH64</accession>
    <name>A0A0Q8VH64_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56814">
        <property type="protein sequence ID" value="KRC56814"/>
        <property type="gene ID" value="ASE19_03090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1662398at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="156"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="180"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="216" mass="22609" checksum="549D2F323485B76C" modified="2016-01-20" version="1">MDLAAGLLVTGIGIDTLRQARAREQLAIAAVPLVLGTHLLVETPVWWSLEGHLSPAVGDLASWAYVAIALVVVPALVPWAFLRLGTSGRAGLDRFFLACGLAAAAAGLFAIGLEPVGRRIDGHHIAYHPGVAWSGVVLAAYVLATCGPSLLARSAELRWFGVGNLAVVALLAWIQQNAVISLWCVWAASTSLLINLALRRTHVPAVASLVAPDGHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHA3</accession>
    <name>A0A0Q8VHA3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PLDc_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02600</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892750.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56732">
        <property type="protein sequence ID" value="KRC56732"/>
        <property type="gene ID" value="ASE19_02600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1881748at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360040" description="PLDc_2 domain-containing protein" evidence="1">
        <location>
            <begin position="28"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="domain" description="PLDc_2" evidence="2">
        <location>
            <begin position="72"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="368" mass="39872" checksum="44EA25B0B16B1601" modified="2016-01-20" version="1">MKRILASLTAATALAAATLSAAPASQAVTTQEAVEAPVAARYTVAAGPIFANRNRAIFNRLIANVDNAPSGSTIRAMTMTFSDTGISNALIRAARRGVYVYVAVASKACGETAVNDLQEADADLSRLKVSCISNGARGTTGTLHIKGMSFSRTGSSSKVVVLTSSNFTKTAPTKQWNDAYQTVGWTKFYDFWTTIHRQVMPDRAITNPFRQMVDGVSRAYATPQNPGQTDPVISRIKALPTRGLRIHVAQSAENGTRGELIMKALAAKRRAGASVTYVYARPAQHRSLLAAAGGTLKMVDPPADDEFLHHKFMIASWINSAGNRVYRTWMGTEVWTDLAKSSDEMVLQLASKRTYDRYRAQISYLLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHD6</accession>
    <name>A0A0Q8VHD6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Flagellar biosynthetic protein FliR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_09340</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FliR/MopE/SpaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894569.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52631">
        <property type="protein sequence ID" value="KRC52631"/>
        <property type="gene ID" value="ASE19_09340"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1942709at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002010">
        <property type="entry name" value="T3SS_IM_R"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30065">
        <property type="entry name" value="PTHR30065"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01311">
        <property type="entry name" value="Bac_export_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00953">
        <property type="entry name" value="TYPE3IMRPROT"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0966">Cell projection</keyword>
    <keyword evidence="8" id="KW-0969">Cilium</keyword>
    <keyword evidence="8" id="KW-0282">Flagellum</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="38"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="63"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="87"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="132"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="174"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="213"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="254" mass="26374" checksum="3AA4799A25ABB8FD" modified="2016-01-20" version="1">MVLSVDGASLIALLLASVRVVAWLAVVPPFSSRGIPAMAKVILSLGLCLAVTPVLAEQDLPMTTFALMTATAAQALIGLAMGYVTMLLFAAVGAAGSLIDLFGGFALAAAWDPLGMNMNTVFGRFHQMLATVLLLVSGGHLLVIGGLLSTFRYLPLNGMPDISSWEGVLVTAFSMFFTVAVQMALPMIAVLFVADLALALLTKVAPQLNALNVMFPAKVGLTLLLLGMSFPMLPQAVEHLVGLANEAMATMAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHG5</accession>
    <name>A0A0Q8VHG5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Big_3_5 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02105</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892663.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56646">
        <property type="protein sequence ID" value="KRC56646"/>
        <property type="gene ID" value="ASE19_02105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2213388at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032109">
        <property type="entry name" value="Big_3_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16640">
        <property type="entry name" value="Big_3_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360038" description="Big_3_5 domain-containing protein" evidence="1">
        <location>
            <begin position="29"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="2">
        <location>
            <begin position="218"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="401" mass="40081" checksum="659A826C8E50422E" modified="2016-01-20" version="1">MKINNRKRWGAVLGLALVASTVGGFAAAAPQFTGDPTTLDWYVADQGGVDDPARTTAGLKLYDAAGAEVTTGSVNAALPAFAAAGGTVRADDTHASLFVHAAQSGTAAGSWPGVQATGTDRFTGAGAVSAPAALAGKPYVRTAGGYRLSDVVASFASAGQGTFGGIYELRLRTSSATQGVGAAYASAFVKVTGDTWAVVAGPEPTQEPAVTQTAVTGPTSAYYGKGFSLTVTVTGSAGSGGTVTVKKGTTVLATKALDADGVIAVPVTGRKLAPGAHALTVAYGGTAQAQASQAGRSITIVRAKSTTTGTLAAATIKASAYPKITARVTAPGVPAATFTGTFTVYDGTRAIKKVTLKATNLGKLAIVLPKRTRGTHYLKVVFSGNTKVAASTSAKYKLVVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHK1</accession>
    <name>A0A0Q8VHK1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HNH endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892998.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56981">
        <property type="protein sequence ID" value="KRC56981"/>
        <property type="gene ID" value="ASE19_04045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1843957at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00085">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029471">
        <property type="entry name" value="HNH_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003615">
        <property type="entry name" value="HNH_nuc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14279">
        <property type="entry name" value="HNH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00507">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNHc" evidence="1">
        <location>
            <begin position="68"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="146" mass="16538" checksum="F65DB1284B011A0B" modified="2016-01-20" version="1">MTTVMLLNASYEPLGTVTFQHAVRMLFREVATVEEAHDDRMIGPHPWPRVIRLVRYVAAKWMYRPAGYSRSGVLKRDRNRCAYCGRHASTVDHLLPQSRGGSWTWLNTVAACSPCNGRKANRTPSEAGMRLLLEPYAPTRAQLARI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIG1</accession>
    <name>A0A0Q8VIG1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Hydroxyacid dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_04015</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892992.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56975">
        <property type="protein sequence ID" value="KRC56975"/>
        <property type="gene ID" value="ASE19_04015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1638924at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029752">
        <property type="entry name" value="D-isomer_DH_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00065">
        <property type="entry name" value="D_2_HYDROXYACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2-Hacid_dh" evidence="3">
        <location>
            <begin position="23"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="domain" description="2-Hacid_dh_C" evidence="4">
        <location>
            <begin position="102"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="314" mass="32701" checksum="9A6132E6A196454A" modified="2016-01-20" version="1">MSRPTILRVPPLSPQLHDAVAERYDAVDPGDLATRAGDVVGIVVSNSGPVSGELIASLPRLGVIANHGVGYDNIDLAAALDRGIAVSNTPEVLDDAVAETALALLLAVRRRVVVADRFVREGQWLQGAFPLTDQLAGSRVGILGLGRIGRAVATRLEAFGCTVSYHNRRQVPGVPYAYATSAVELAESVDSLVAVVPGGDDTAALVDRAVLDALGPAGVLVNIARGSVVDQRALVDALHEGRLGGAGLDVYADEPHVPVELTTMDNVVLLPHVGSATHATRAAMRALTLDNLASWLADGTLRTPIPEMADQPAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIR7</accession>
    <name>A0A0Q8VIR7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06655</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894509.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55107">
        <property type="protein sequence ID" value="KRC55107"/>
        <property type="gene ID" value="ASE19_06655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1781218at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="168"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="173"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="191"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="236" mass="26501" checksum="79A42E1C45DBCA05" modified="2016-01-20" version="1">MNPRARLRRALLVGGLLPALLVLGYAVKVGLMLQHNAAGRDAFELGDYDGSAAEFFDTRDLNWFEPWIAPFDEGTGYHGDGLYDRAIESYEDALEDVPQRDECTVRINLALAHEAVGDQRQADEDLDGAIESWQAGIDVLAAGECPTDSGRGKEQTDDAAAVDGRLRDKVQQGKQQQDQTAPPQQQSPQSEGEKPEDEGEDPRQQRLERNNEQGRDRRKDEQRLYDDQDYTRPESW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIS1</accession>
    <name>A0A0Q8VIS1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_24065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894034.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57400">
        <property type="protein sequence ID" value="KRC57400"/>
        <property type="gene ID" value="ASE19_24065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360072" evidence="1">
        <location>
            <begin position="22"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="15081" checksum="2E14D38631EB2F64" modified="2016-01-20" version="1">MRLFTKSNVATIAIVTGIVVASGTGGAVAGALITGKQIKDGTVTSIDIANGSLTGTDIKNATVGRGDLATSARGVQAPKVILASAPVIGGSWNTAPASCPSGYRVLAATGWMTNSRGAVQLDTSNTGVTAYSPDVDSSDTVNLRLVCAIFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK89</accession>
    <name>A0A0Q8VK89_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cytochrome</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_23635</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893956.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57750">
        <property type="protein sequence ID" value="KRC57750"/>
        <property type="gene ID" value="ASE19_23635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1885467at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002397">
        <property type="entry name" value="Cyt_P450_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00359">
        <property type="entry name" value="BP450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="8">
        <location>
            <begin position="485"/>
            <end position="587"/>
        </location>
    </feature>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="7">
        <location>
            <begin position="710"/>
            <end position="797"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="462"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="465"/>
            <end position="491"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC57750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="797" mass="88667" checksum="BAF59CCFBC2FC6DD" modified="2016-01-20" version="1">MSVVGQVISKAQAVVPMERQVQGLHLFQKAKRRVLGDRQPVFAEDRIPDVDQLALTEIDVSNPFLFRQGQWQSYFKRLRDEAPVHYQANSAFGPFWSVTRYDDIVTVDKDWEVFSAEPQIVIGTPPEGLDVEMFIAMDPPRHDEQREAVQGVVAPQNLEEMEGLIRSRVQEVLDDLPVNEPFDWVDRVSVELTSRMLATLLDFPYERRRDLVRWTELAAASASATGGSNDMDETYRGIADMAKSFSALWHDKAARRAAGEKPGYDLITLMQMSEETKDLIDRPMEFLGNLILLVVGGNDTTRNSMSGGVLALNQFPDEFARLKADHSLVPKLVHEIIRWQTPLAYMRRIATRDTVLNGQFIRKGDKVVMWYASANRDERTFENPDDFVIDRPNGRRHLSFGIGVHRCMGARLAEMQLRILWEELLARFEDIEVVGEPEYLQSNFVRGYTRLMVTLTPLGQQSRRLPVDEPRRSAAGEDRARRSPEAESDLRVAGRREVADGIVELTLVDPTGAPLPAWTAGAHVDLVLDPSLTRQYSLCGSATDRASWKIGVLRDPNSRGGSVHVHDELAEGSTVRVRGPRNHFPLHPSPRYQFIAGGIGITPILAMIEAAESRGAEWSLLYGGRSRASMAFLDKLEGDDRVTVWPEDEEGLLDLASVLDTPRPDTLVYCCGPGALLDAVEEGCASWPDGSLHVERFAAKAVEAPEDALDSFDVECSRSGVTVKVTEGASIFDELESAGVNVLGSCMEGVCGTCEADVLEGTPDHRDSVLSRSERERGATIMLCVSRSLSEKLVLDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLI2</accession>
    <name>A0A0Q8VLI2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">Uricase</fullName>
            <ecNumber evidence="5 7">1.7.3.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Urate oxidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_06165</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 7">Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5 7">
            <text>H2O + O2 + urate = 5-hydroxyisourate + H2O2</text>
            <dbReference type="Rhea" id="RHEA:21368"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:17775"/>
            <dbReference type="ChEBI" id="CHEBI:18072"/>
            <dbReference type="EC" id="1.7.3.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Purine metabolism; urate degradation; (S)-allantoin from urate: step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 7">Belongs to the uricase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.7.3.3" evidence="5 7"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894434.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55024">
        <property type="protein sequence ID" value="KRC55024"/>
        <property type="gene ID" value="ASE19_06165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1150949at2"/>
    <dbReference type="UniPathway" id="UPA00394">
        <property type="reaction ID" value="UER00650"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004846">
        <property type="term" value="F:urate oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006144">
        <property type="term" value="P:purine nucleobase metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019628">
        <property type="term" value="P:urate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002042">
        <property type="entry name" value="Uricase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019842">
        <property type="entry name" value="Uricase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42874">
        <property type="entry name" value="PTHR42874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01014">
        <property type="entry name" value="Uricase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000241">
        <property type="entry name" value="Urate_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00093">
        <property type="entry name" value="URICASE"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03383">
        <property type="entry name" value="urate_oxi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00366">
        <property type="entry name" value="URICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3 5 7" id="KW-0659">Purine metabolism</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Charge relay system" evidence="6">
        <location>
            <position position="12"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="6">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="6">
        <location>
            <position position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000241-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC55024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="289" mass="31927" checksum="4145272B6E46D035" modified="2016-01-20" version="1">MTYRLSDLQHGKAECRLVKVDRTDGLHVLHDLNVTTQLRGDFATAYTDGDNTQVHATDTQKNTVFALAREHGVTTPEAFLLALADHWRRQPWVTGTWFHAEEQPWQRLPQNGHSFVRTGVATRTAWVQTDGDETFVLAGTADLVVLKTTGSEFHGFPRDRFTTLAETDERILATSVTATWRYAVTDADWDTLHATVQDAIAGAFASTHSLALQQTIHAMGEAALDACPEVVEIRIACPNKHHFLVDLQPFGLDNPGEVYVAADRPYGLISATISRSDVPAEPRAWTGIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLR8</accession>
    <name>A0A0Q8VLR8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06640</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894506.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55104">
        <property type="protein sequence ID" value="KRC55104"/>
        <property type="gene ID" value="ASE19_06640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1923112at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="167" mass="18538" checksum="BB78FCC634207AEB" modified="2016-01-20" version="1">MRAVAEPRADVPGMPAEFSGPVAYAERWLWIAVVLVALVVVYYAASWWLTRPPRPPVVERRDVDVLNVRRDHLARIDALVAQVHGGTVDPREGHQRLSDLVRSYVAAVTTLPARTMALADFRDRAPQELVDALELMYPPEFAPDADDPAARFDEAAAASRRLVGSWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLU1</accession>
    <name>A0A0Q8VLU1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA helicase</fullName>
            <ecNumber evidence="3">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_04570</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the helicase family. UvrD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55120">
        <property type="protein sequence ID" value="KRC55120"/>
        <property type="gene ID" value="ASE19_04570"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013986">
        <property type="entry name" value="DExx_box_DNA_helicase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014017">
        <property type="entry name" value="DNA_helicase_UvrD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000212">
        <property type="entry name" value="DNA_helicase_UvrD/REP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038726">
        <property type="entry name" value="PDDEXK_AddAB-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014016">
        <property type="entry name" value="UvrD-like_ATP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070">
        <property type="entry name" value="PTHR11070"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12705">
        <property type="entry name" value="PDDEXK_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00580">
        <property type="entry name" value="UvrD-helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13361">
        <property type="entry name" value="UvrD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51198">
        <property type="entry name" value="UVRD_HELICASE_ATP_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51217">
        <property type="entry name" value="UVRD_HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="9" id="KW-0234">DNA repair</keyword>
    <keyword evidence="7" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="10 13" id="KW-0347">Helicase</keyword>
    <keyword evidence="10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UvrD-like helicase ATP-binding" evidence="11">
        <location>
            <begin position="1"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="UvrD-like helicase C-terminal" evidence="12">
        <location>
            <begin position="305"/>
            <end position="619"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="20"/>
            <end position="27"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC55120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1059" mass="115210" checksum="1E3FD76683577A0D" modified="2016-01-20" version="1">MDEHQRRVVEHEGGPLLVLAGPGTGKTTTLVEAVVDRVERRGARPDQVLALTFSRKAADQLRDRVSARLGRTTGHQLSSTFHSFAYALVRKYAPAELYEAPLRLLSAPEQDVVLRELLADHPESVTWPDRFRQATQTRGFAREVHAVLGRAREKGMDGEELRALGEAEGIDEFVAAGLFLEQYLDSLDSLGATDYADLIRRARIEAEVHRAELRERFRHVFVDEYQDTDPGQVALLRAIAGDGRDLVAVGDPHQSIYAFRGAEVRGILEFPTQFPRSDGTPADVVALRTTRRFGPRILIASQRVAGRIGLPGTIPEAARESFLAPQCAPGPHGDGKVEVLTYDTDRAEADHLADILRRAHLEDGVGWDEMAVLVRSGRASIGPLRRALGAAGVPVEVASDEVPLVRDPAVLPLLEAMRAVVNLDNTDHTDVGYVDPGRAEALLTGPLGGLDAGDVRRLARQLRAREKDACQETGGTPRSSRELVRLAVVDATHLEGLSGTEADRARGVAQLLAGARTAADGGASAEELLWTLWSGTAWPQRLRRSVEAGGGAARRAHRDLDAICALFDLAARVGEKREHLAVVPFLASLVQQEIPADTLADRGARGAAVRLLTAHRSKGLEWRLVVVAHVQDGGWPDLRRRASLLQADRIGPGVVVPAVTPRELLAEERRLFYVACTRAQERLVVTAVASPDDDGEQPSRFLEELVPDRDHIVAVSGRPPRPLSLAGLVAELRRTVADPEAPEALRTAAARRLSRLSGERAGRRQLIPAADPASWWGTRAASRSEEPIRELDKPVPISATVLDAIAACPTRWFLEREAGGVARSHQSANLGQLVHALAERVADGSVDGRLDILMGEVDHVWDRLDFRTPWSKDREYKRVRAALARFLTWHERNPRRLIATEARFATVVTMDDGTPVRINGYADRVEVDGDGRVVVVDLKTGRGKPSGPAVRDHVQLALYQYAVDAGALDDPEAGLTGLTSGGAELIQLGLEDGSVDATRQEQDPHADDGPERAALRSRITQVAHLLREETFPAVAGDHCRDCGFVPLCPVKSPGSVVER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLY7</accession>
    <name>A0A0Q8VLY7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 12">Aspartate-semialdehyde dehydrogenase</fullName>
            <shortName evidence="12">ASA dehydrogenase</shortName>
            <shortName evidence="12">ASADH</shortName>
            <ecNumber evidence="7 12">1.2.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Aspartate-beta-semialdehyde dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">asd</name>
        <name evidence="14" type="ORF">ASE19_08295</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>L-aspartate 4-semialdehyde + NADP(+) + phosphate = 4-phospho-L-aspartate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:24284"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57535"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="1.2.1.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 12">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 2/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 12">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 2/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 12">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 12">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 12">Belongs to the aspartate-semialdehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.11" evidence="7 12"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895487.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54055">
        <property type="protein sequence ID" value="KRC54055"/>
        <property type="gene ID" value="ASE19_08295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1799040at2"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00016"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00463"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00464"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004073">
        <property type="term" value="F:aspartate-semialdehyde dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071266">
        <property type="term" value="P:'de novo' L-methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02121">
        <property type="entry name" value="ASADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000319">
        <property type="entry name" value="Asp-semialdehyde_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012080">
        <property type="entry name" value="Asp_semialdehyde_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005986">
        <property type="entry name" value="Asp_semialdehyde_DH_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000534">
        <property type="entry name" value="Semialdehyde_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012280">
        <property type="entry name" value="Semialdhyde_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01118">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02774">
        <property type="entry name" value="Semialdhyde_dhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00859">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01296">
        <property type="entry name" value="asd_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01103">
        <property type="entry name" value="ASD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 12" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="10 12" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="11 12" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="12" id="KW-0521">NADP</keyword>
    <keyword evidence="12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 12" id="KW-0791">Threonine biosynthesis</keyword>
    <feature type="domain" description="Semialdhyde_dh" evidence="13">
        <location>
            <begin position="4"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="12">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="12">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="11"/>
            <end position="14"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="39"/>
            <end position="40"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="162"/>
            <end position="163"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="251"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="327"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC54055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="347" mass="36220" checksum="B5871E27E438F9FC" modified="2016-01-20" version="1">MTINIGVVGATGQVGVAMRQILLERNFPVGEIRFFSSARSAGKVLQFGDREVVVEDAETADPTGLDVALFSAGATASRALVPRFVDAGVIVVDNSSAFRKDPAIPLVVSEVNPEAAAEVIAAGRGIIANPNCTTMAAMPVLKPLHEEAGLVRLIASTYQAVSGSGIAGVEELSTGVAAAGDKAKELAYDGEAVVFPEPGVYKRTIAYNVLPFAGNLVDDGLNETDEEQKLRNESRKILGIPDLRVSGLCVRVPVFTGHSLAINAEFASPLTAERARELLAGAPGVELADIPNPLAAAGKDPSYVGRIRQDPGVDDDRGLALFVSNDNLRKGAALNTVQIAELIAASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMQ5</accession>
    <name>A0A0Q8VMQ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_05800</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894114.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54962">
        <property type="protein sequence ID" value="KRC54962"/>
        <property type="gene ID" value="ASE19_05800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="224125at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021878">
        <property type="entry name" value="TgpA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002931">
        <property type="entry name" value="Transglutaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11992">
        <property type="entry name" value="TgpA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01841">
        <property type="entry name" value="Transglut_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="27"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="78"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="139"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="165"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="189"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="227"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="632"/>
            <end position="659"/>
        </location>
    </feature>
    <feature type="domain" description="TgpA_N" evidence="4">
        <location>
            <begin position="36"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="domain" description="TGc" evidence="3">
        <location>
            <begin position="510"/>
            <end position="566"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="574"/>
            <end position="625"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF11992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="781" mass="82532" checksum="1975806530097FD8" modified="2016-01-20" version="1">MSTTVTARQGTSPEAAGPRAFGNRQHLVDAGAILLLGLVASYGFRDTFNGWTFLLAAGAGFVIGILLAHLSTLLARPVVVLAVLVVAAFFLLGGAVALHADGVVASLPLPDTLAELADQAVHGWKDLLTTRAPIDGGPLLTLPYLMGLVAGSCGMALASRTRSAIWPLLAPVAYLAAVILLGIQWPTRLITLGLVFAVLSVSWIAVRAGRLNRRVIQGGPSWRRRGAAVLLVGAAASAAPMVGPMLPGADSHDRMVLRAHITPPFDVGQYPSPLAGFRRYTKGYRVPGGDKDAKLYDRELMRVDGDLPEGTRLRFAALDDYTGTAWGASNEAPDVTGPDGQFQRVGTAIRDEGPGREVTATVTLADDYDGVWVPTPGAVDELEFKGAGADEKTKSFRYNLATDTGVLPQGLHGGDSYTFSAHVAGEEDRLTADTVPSGQSLSTDASGAPFGPVAQRWGGDGEGVKQLLAIAKHMDEEGYYTDGGAEGEAFYEAGHSVKRLSGFTADADGQTAGNDEQYAATLALLGTQIGLPVRVVMGAIVPDGGVVKGKDVHAWVEVKDSSGTWRELPYDAFLPPYNRPPDQSPPSQQQLKSGTIIPPAAPVRPPSSAGDPLATDDNRRGNQEGDDGWLTLPAWLVAVLTYVGAPLLLVALLLGAVITAKSVRRKRRRTRGAPGARLTAAWREVLDQARDVGHLVHGRRTRREQAAQIGLPTAAALARSADRHVFGAVEPTDDDAASYWTEVDAIRVELASGLTRWQRLRAAVSPTSFRPLPTPEPEVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN06</accession>
    <name>A0A0Q8VN06_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9 10">Protein translocase subunit SecY</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">secY</name>
        <name evidence="13" type="ORF">ASE19_06485</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Component of the Sec protein translocase complex. Heterotrimer consisting of SecY, SecE and SecG subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. Interacts with SecDF, and other proteins may be involved. Interacts with SecA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1 11">Membrane</location>
            <topology evidence="1 11">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 12">Belongs to the SecY/SEC61-alpha family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894481.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55074">
        <property type="protein sequence ID" value="KRC55074"/>
        <property type="gene ID" value="ASE19_06485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1567535at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01465">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026593">
        <property type="entry name" value="SecY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002208">
        <property type="entry name" value="SecY/SEC61-alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030659">
        <property type="entry name" value="SecY_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023201">
        <property type="entry name" value="SecY_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10906">
        <property type="entry name" value="PTHR10906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00344">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004557">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103491">
        <property type="entry name" value="SSF103491"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00967">
        <property type="entry name" value="3a0501s007"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00755">
        <property type="entry name" value="SECY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00756">
        <property type="entry name" value="SECY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9 11" id="KW-0653">Protein transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9 11" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 9 11" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="70"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="118"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="159"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="190"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="215"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="318"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="377"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU004349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC55074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="436" mass="48116" checksum="AA4094212088E915" modified="2016-01-20" version="1">MLTAFVNAFRTPDLRRKLLFVLLIIVIFRAGSQIPAPGVNVSNVEKCIDIVKDGENAGLYSLVNLFSGGALLQLTIFALGIMPYITASIILQLLVVVIPRLEALKKEGQAGQTKITQYTRYLTLGLAVLQATGIVALARTGNLLQGCEEPLLHSDNTKTFLVMVVTMTAGTAVIMWLGELITERGVGNGMSILIFTQVVATFPISLWQVKITQGWWTFGMVIAIGLVLIAAVIFIEQAQRRIPVQYARRMVGRKMFGGSSTYIPLKVNQAGIIPVIFASSLLYLPAMAVQFNQNAQSSNKFIDWINEYLVDQSHPVHMAAYFLLIIFFTYFYVSITFNPQEVADNMKKYGGFIPGIRAGKPTQDYLSYVLSRITLPGSLYLGLIAIIPLIAFVLIDANQNFPFGGTSILIMVGVALDTVKQIESQLQQRNYEGFLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN49</accession>
    <name>A0A0Q8VN49_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH merR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892964.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56947">
        <property type="protein sequence ID" value="KRC56947"/>
        <property type="gene ID" value="ASE19_03855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1467120at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019278">
        <property type="entry name" value="DICT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10069">
        <property type="entry name" value="DICT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="14"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="290" mass="31558" checksum="3E0A686625C4417F" modified="2016-01-20" version="1">MDQTEAAAQAPDADLTIGDLAQRAGVTTSVLRMWESRHGFPVPHRLASGHRRYTAADVELVRQVLRRRDAGIRLEVAIAEAAATRPPSNPSIYAELRRRHPALATHRLRKSTLIALSWAIEDECCAVADRPVLFGAFQRAEFYAPSAPRWTELDRVARSAVVFADHWPDTADAASGPVRATLAEDAPMRREWAVVCDAADSTACLTAWELPGQAAVPDRQRIFEAMWTVDPAAVRDAARVAASVAESAGVLAARPLLYELAEAPAPRTTTPDGVTALFNRVVAYVDRLGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN53</accession>
    <name>A0A0Q8VN53_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_22975</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58926">
        <property type="protein sequence ID" value="KRC58926"/>
        <property type="gene ID" value="ASE19_22975"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="37"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="119"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC58926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="325" mass="34309" checksum="4FDB0260AAFA6D09" modified="2016-01-20" version="1">MKPMNERDPLRIGIITLIVIGLIGAGVVVLSVANFGTKTYTAVLEHTAGLRKGEDVQVHGVNSGKVTGIELEDDHVLVTFALDSGIDLGDRSTATVKVATLLGSHYLEVDPKGSGSLAGEQIPLDRTDVPYNLQDVIEEGSDALDELDPELLAKALTSMAGTLGASQDEIGPALEGVARLSEVISKRSGQVGDLLESTRKVTDQLSDSSQDIVGLMKQANLVISEITARREAIHRLLVETTELSRAITAVVKSTDGKLQPALKDIKAVLATLNSQDVKLTTLLENMAPAVRYVANATGSGPFLPLYLKPPAIPGDDTTCKLQGAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN84</accession>
    <name>A0A0Q8VN84_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aldose epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23230</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892516.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58970">
        <property type="protein sequence ID" value="KRC58970"/>
        <property type="gene ID" value="ASE19_23230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="710313at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09022">
        <property type="entry name" value="Aldose_epim_Ec_YihR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008183">
        <property type="entry name" value="Aldose_1/G6P_1-epimerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014718">
        <property type="entry name" value="GH-type_carb-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037480">
        <property type="entry name" value="YihR-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01263">
        <property type="entry name" value="Aldose_epim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="SSF74650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="294" mass="31297" checksum="8CF4C045CAF57B60" modified="2016-01-20" version="1">MNAPTGEQYAIASHGYEAVVTQSGVLRRLRYDGRDLVDGFDADAMPAGGRSQLLVPWPNRLRDGRYEFGGATHQLALTEPKRGNASHGLVRWVSWTVARHEADVIELRYFLPAQTGYPWALSLTVTYALGADGLTVTQGATNEADSPAPYASGAHPYLLAGPGPCDGWELELPASTYLTVDDERLLPTGRAPFAGVVASPLGGTVLNHAVTDLERDADGVATVRLRAGGTGVTLWVDGHHRWLQVYTGDDTPTPRVSVAVEPMTAPPDAFNSGEDLVVLEPGASSSASWGIRAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPV2</accession>
    <name>A0A0Q8VPV2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">PBPb domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_05460</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the bacterial solute-binding protein 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894178.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54903">
        <property type="protein sequence ID" value="KRC54903"/>
        <property type="gene ID" value="ASE19_05460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="685252at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018313">
        <property type="entry name" value="SBP_3_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01039">
        <property type="entry name" value="SBP_BACTERIAL_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="PBPb" evidence="4">
        <location>
            <begin position="66"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="313" mass="33460" checksum="AED9938190073A5A" modified="2016-01-20" version="1">MVGVMVAGGLFMSACGYDATVVPEAKAPATTSGSAIKPVECDNATQSYQPSNDAAAARRELLNPDRLVVGVSADTYQLGWANPFDDSRIQGFDIDVAKAVADALGVKLQLRVISAADRPTLLGAKTDGEAHEQEIDLVARNYTMNCTRWTQIGFSAVYYNATQKVLVRKDDVGDFEKRGVASLAGKDVCAPAGSTSIDNIKEIQPDVEAVPAANHTGCLVKFQQGEVDAITGDDTVLAGLAAQDPYAVVPDQQKLTDEPYGIGANKGDKDLIAFVNSVLEQRRSNGEWQKSYDKWLKPYLGNATAPAPTYGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPV9</accession>
    <name>A0A0Q8VPV9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cholesterol oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_00100</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896859.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59482">
        <property type="protein sequence ID" value="KRC59482"/>
        <property type="gene ID" value="ASE19_00100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="365211at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="2">
        <location>
            <begin position="6"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="GMC_oxred_C" evidence="3">
        <location>
            <begin position="465"/>
            <end position="522"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="571" mass="61868" checksum="6CEE5ACAF75A3DE4" modified="2016-01-20" version="1">MADFDYDVLVIGSGFGGSVTALRLTEKGYRVGVLEAGARFTDADFADNSWDLKKYLYAPSAGCYGIQRIDMVKDCLILAGAGVGGGSLVYANTLYEPLEPFYKDPSWAHITDWKSELAPYYDQAKRMLGVVEYPRMTPSDEVMKKVADQMGVGDTFHHTPVGVFFGGPSQAAGDAVEDPYFGGVGPKRNTCLNCGECMTGCRHNAKNTLVKNYLYLAEQNGAEVHPLTTVTRVRPLAGGGYQVDTRWTKAKLSRRTAVKTFTAEQVVFSAAALGTQKLLHRLKAEGDLPNISDRIGHLTRTNSESILGAIAPEGADVDYTEGVAITSSWHPDEHTHIEPVRYGKGSNAMSLMQTVLTDGDGDQPRWKVWLKELWKERSRVRDLYDVKHWSERVVIALVMQSVDNSITTFPRRVAGKWILSSKQGHGEPNPTWIPAANDAVRRMADVMGGGTAGGTIGEPFNRPLTAHFIGGCTIGDSPESGVVDGYQRVFGHPGLHIVDGSTISANLGVNPSLTITAQAERAMAYWPNKGTTDSRPALGEAYQRIDPVAPQAPVVPDDAPAALRLPIVGVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ53</accession>
    <name>A0A0Q8VQ53_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00940</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896720.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59621">
        <property type="protein sequence ID" value="KRC59621"/>
        <property type="gene ID" value="ASE19_00940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="925095at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="337" mass="35499" checksum="430A09D55921F298" modified="2016-01-20" version="1">MSSSRAERLLDAQVAWLVGRLTGDELPALVERDLRALLDLEARITLADLVDAEQAKRQVRAVLTTVPASTGASTVVTMLADVLYDGPEASYTLGDLVAREDLERVAEEALSRTDLVARLLDDVSASPIASTLASRFVGRLVGEVMQSNRAAAEKIPGLGALVALGVGAAGVVAGAADKQLEGVLGMGASFATRRLNRVLVETLKDPAARAAVLEVYDLYADRPIPHLRDSAKRQDVHRAAGLAQDLAISGAASEPVLALADAVVDAFWRIYGEHPATAFAVDLGLDRDALVSQATSMAAVAVAVAHDNGDLERLVRERLEPFYASPEVAAILAEPGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQJ8</accession>
    <name>A0A0Q8VQJ8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Histidinol-phosphate aminotransferase</fullName>
            <ecNumber evidence="3">2.6.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Imidazole acetol-phosphate transaminase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">hisC</name>
        <name evidence="5" type="ORF">ASE19_02265</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>2-oxoglutarate + L-histidinol phosphate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:23744"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57766"/>
            <dbReference type="ChEBI" id="CHEBI:57980"/>
            <dbReference type="EC" id="2.6.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 7/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.9" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892691.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56673">
        <property type="protein sequence ID" value="KRC56673"/>
        <property type="gene ID" value="ASE19_02265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1248286at2"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00012"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004400">
        <property type="term" value="F:histidinol-phosphate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01023">
        <property type="entry name" value="HisC_aminotrans_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001917">
        <property type="entry name" value="Aminotrans_II_pyridoxalP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005861">
        <property type="entry name" value="HisP_aminotrans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01141">
        <property type="entry name" value="hisC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00599">
        <property type="entry name" value="AA_TRANSFER_CLASS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 3 5" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="4">
        <location>
            <begin position="25"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3">
        <location>
            <position position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="363" mass="39250" checksum="F0711C073662A8D4" modified="2016-01-20" version="1">MTWPPLREELRGIEPYGAPQLDVPVQLNVNENPYGPSPACIADIATSAAEAAVTLNRYPDREFVALRAALADYLSRDTPAGIVPEQVWAANGSNEVMLQLLQAFGGPGRTAVSFAPTYSMYPEYARDTNTRWVAGRRADDFSLDLDAARDLVKTELPSVILLPSPNNPTGTALPPEAVGELCEAAGDGLVVVDEAYGEFRREGVPSALELLPSYRNLVVTRTMSKAFAGAGLRLGYLAAAPEICDAIRVVRLPYHLSAVTQAVALAALRHAPELLGKVDELRVERDALVIWLRDEGCDVADSDANFVLFGRFADRHAVWQGLLDRGVLIRETGPDGWLRVSVGTPDEMAAFRAALTDVDGERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQN7</accession>
    <name>A0A0Q8VQN7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01685</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896583.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59756">
        <property type="protein sequence ID" value="KRC59756"/>
        <property type="gene ID" value="ASE19_01685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1811496at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="135" mass="14699" checksum="29D2747689DA9D72" modified="2016-01-20" version="1">MAVFTSSDEMYEVFTPFMQSLTTDPVVGKKFSSAHTSFRVVHEDPDGVFLLDATVDPPVLYVGADADGREAEVDLTMSAEDGHKFWLGQLNLPVALARRKIKVSGGVAKLMGLVPALQPAYGLYREHLTSIGREA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQQ6</accession>
    <name>A0A0Q8VQQ6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Diaminopimelate epimerase</fullName>
            <shortName evidence="8">DAP epimerase</shortName>
            <ecNumber evidence="4 8">5.1.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">PLP-independent amino acid racemase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">dapF</name>
        <name evidence="10" type="ORF">ASE19_01055</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>(2S,6S)-2,6-diaminoheptanedioate = meso-2,6-diaminoheptanedioate</text>
            <dbReference type="Rhea" id="RHEA:15393"/>
            <dbReference type="ChEBI" id="CHEBI:57609"/>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
            <dbReference type="EC" id="5.1.1.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the diaminopimelate epimerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.7" evidence="4 8"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896698.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59643">
        <property type="protein sequence ID" value="KRC59643"/>
        <property type="gene ID" value="ASE19_01055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1921631at2"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008837">
        <property type="term" value="F:diaminopimelate epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00197">
        <property type="entry name" value="DAP_epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018510">
        <property type="entry name" value="DAP_epimerase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001653">
        <property type="entry name" value="DAP_epimerase_DapF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31689">
        <property type="entry name" value="PTHR31689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01678">
        <property type="entry name" value="DAP_epimerase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00652">
        <property type="entry name" value="DapF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01326">
        <property type="entry name" value="DAP_EPIMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 8" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="101"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="226"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="236"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="235"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="208"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Could be important to modulate the pK values of the two catalytic cysteine residues" evidence="8">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <feature type="site" description="Could be important to modulate the pK values of the two catalytic cysteine residues" evidence="8">
        <location>
            <position position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC59643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="31101" checksum="E5729F42AFFB5E85" modified="2016-01-20" version="1">MSSDRRVEEAARGRLETYRFLKGHGTENDFVLLPDHDGAVHGALSEDRVRALCDRRAGIGGDGVLRVIRTAAIGAAGVGQEDAEWFMDYRNADGSVSEMCGNGVRVFGRHLALEGLADPTRPVPVATRAGVKVLTFAGGTPDGEITVDMGIPKVLEQTTVAVGERRWDALHVDMGNPHAVAFVDDLADAGPLLDAPDHDPAAYPAGVNVEFVVRRAPQHVAMRVHERGSGETRSCGTGACAVMVATALADDAARDTEYRVDLPGGTLRITWTADDRILMTGPALVVAEGTTEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQU2</accession>
    <name>A0A0Q8VQU2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Ribosomal RNA small subunit methyltransferase I</fullName>
            <ecNumber evidence="7">2.1.1.198</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">16S rRNA 2'-O-ribose C1402 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">rRNA (cytidine-2'-O-)-methyltransferase RsmI</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rsmI</name>
        <name evidence="9" type="ORF">ASE19_01215</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>cytidine(1402) in 16S rRNA + S-adenosyl-L-methionine = 2'-O-methylcytidine(1402) in 16S rRNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42924"/>
            <dbReference type="Rhea" id="RHEA-COMP:10285"/>
            <dbReference type="Rhea" id="RHEA-COMP:10286"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74495"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="EC" id="2.1.1.198"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the methyltransferase superfamily. RsmI family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.198" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896666.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59675">
        <property type="protein sequence ID" value="KRC59675"/>
        <property type="gene ID" value="ASE19_01215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1059309at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070677">
        <property type="term" value="F:rRNA (cytosine-2'-O-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000453">
        <property type="term" value="P:enzyme-directed rRNA 2'-O-methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11648">
        <property type="entry name" value="RsmI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01877">
        <property type="entry name" value="16SrRNA_methyltr_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008189">
        <property type="entry name" value="rRNA_ssu_MeTfrase_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46111">
        <property type="entry name" value="PTHR46111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005917">
        <property type="entry name" value="MTase_YraL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00096">
        <property type="entry name" value="TIGR00096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 7 9" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="6 7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5 7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="8">
        <location>
            <begin position="5"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="278" mass="29161" checksum="FD1BB499E0BB3FA0" modified="2016-01-20" version="1">MTGVLVLAGTPIGQVGDAPPRLAEELASADVVAAEDTRRLRRLTTDLGIELRGRVVSYFEGNESARTPTLVEALVAGERVVLVTDAGMPSVSDPGYRLVAAAVEAGIRVTAVPGPSAVLTALAVSGLPVDRFCFEGFLPRKAGERSRRLADLGAEQRTMVFFEAPHRTAAALEAMRDAFGVDRAAAVCRELTKTHEEVRRGSLAELVDWAGEGIRGEVTIVVSGASPTAALASDPDSLREAVAGLEASGMRRKDAIAAVAVQAGVPKRDVYQVVHIDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQZ8</accession>
    <name>A0A0Q8VQZ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03475</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892894.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56877">
        <property type="protein sequence ID" value="KRC56877"/>
        <property type="gene ID" value="ASE19_03475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1378624at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021247">
        <property type="entry name" value="DUF2785"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10978">
        <property type="entry name" value="DUF2785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="282" mass="31135" checksum="68601FEBF7D764B7" modified="2016-01-20" version="1">MASVDWSRLQFGLRNGERTPPAEHRLSDLTADLTRMLGDPDPEVRDGLAYPFLATWIEHGVYDDLLAGLGDGMCAGLDVGIGEQDTDTVFRRSFSALVLAECIDRDTRVRRQPPSRLLQWGDRLMAWYVRERDLRGFVASKGWAHAAANGADALGALARSPYFGATELTVVLDVIADRVLDPATPVLLHGEPDRIAHAVMEVLRRDRVPLSVVEPWVRRLENGARVRTPAGVDPYATTGNAQAVLRALYLQLTISPRHPAIRPDLLLTLVASLRRVHPAFLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR92</accession>
    <name>A0A0Q8VR92_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04005</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892990.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56973">
        <property type="protein sequence ID" value="KRC56973"/>
        <property type="gene ID" value="ASE19_04005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="750230at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="7"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="308" mass="32187" checksum="761260928B8468AC" modified="2016-01-20" version="1">MLGPHVPDLRALELLVVVARTGSLGAAAAELGITQQAASSRVRTMESLVGEPLVARSKRGSELTPTGELVVQWAGRVLDAAQELDAGIGALRADRRGHLDIAASLTIAEHLLPGWIVGLRAQQAQRGRQPTDVTMTATNTRRVTELVTSGEIALGFVEGPDAPRGLRHRLVGTDELVVVVGPAHPWALRSRRRVSAATLAATPLVVREPGSGTRTVLERALADLPMAPPVLELSSTAAVRAAVAAGAGPAAVGAHAVRDDLATGRLVRVTVTGLDLTRRLHAVWKGGPHPPEGPARELVAWAARAART</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRB0</accession>
    <name>A0A0Q8VRB0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01560</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896605.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59734">
        <property type="protein sequence ID" value="KRC59734"/>
        <property type="gene ID" value="ASE19_01560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1584772at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="308" mass="34178" checksum="50BD64C565A322C4" modified="2016-01-20" version="1">MSTTTASPTQLAEYRRDPVWGGQSHPARVTIEDGAAPWKDHIYVAFWDTTHQAYGFLHWNSSPNHDTTKVQANLSLGGQRIDIIEPLDPQADHFSSDSADFDLKGSIEYHHDRLTGRLTMTPLFSIIDFGPGGSLPTLGENAPLEHFEHGLRIAGTLTLDGVDHVIDAVGFRTRTWGFRDDSQQFTEYYFLWASYADHAVGFIKQLHPDGSQRTGGAVVREDSVTYIDDVHLVKNRAGFAQRVTVDLADGTNLVLERGEEAWGGWCPIGLPEREGPAFSAYDEIGAWVDQSGESAYGLSEYGQIRFVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRK8</accession>
    <name>A0A0Q8VRK8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_02080</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892659.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56642">
        <property type="protein sequence ID" value="KRC56642"/>
        <property type="gene ID" value="ASE19_02080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1216599at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016539">
        <property type="term" value="P:intein-mediated protein splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.28.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027434">
        <property type="entry name" value="Homing_endonucl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006142">
        <property type="entry name" value="INTEIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00379">
        <property type="entry name" value="INTEIN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="249" mass="28348" checksum="552A7C8EF214655A" modified="2016-01-20" version="1">MYSEHVRQQARELRARGLTWQAVATELGVSVSAVLAWDRDPHAWARRLSECPRCGDAPLDSPAYSALLGYYLGDGHIARAARYYALRVACDTTYPGIINDVTDCITKVRPGARVFLVRRPGCINVQAHWQHWACLFPQHGRGPKHERPIVLASWQQAIVEDHPGPFLRGLFHSDGCRANNWTRRTVAGEPKIYRYPRWQFVNASQDIRELCCWALDLVEIPWRPSNTRTISVSRREAVARLDELIGPKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSV6</accession>
    <name>A0A0Q8VSV6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Germane domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_23405</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917923.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57709">
        <property type="protein sequence ID" value="KRC57709"/>
        <property type="gene ID" value="ASE19_23405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2045632at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019606">
        <property type="entry name" value="GerMN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018911">
        <property type="entry name" value="Gmad2_Ig-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10646">
        <property type="entry name" value="Germane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10648">
        <property type="entry name" value="Gmad2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00909">
        <property type="entry name" value="Germane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="1" id="KW-0564">Palmitate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360351" description="Germane domain-containing protein" evidence="4">
        <location>
            <begin position="27"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="domain" description="Germane" evidence="5">
        <location>
            <begin position="102"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="24"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="287"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="36"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC57709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="310" mass="32098" checksum="1E3B20D95114814F" modified="2016-01-20" version="1">MSTPLRRTAAVLAGATLTLGLLAACGDDDPRPTAGDPATTGTTTAPTGATDGTDATDAPTDSGSATPESPDPEVIPVYYVGDAPRGDVLFREFSQASGVAPLVAAAAAVTAGDPIDPDYRTLWPGGRFAGVEQTSDAIVVDVADRTWLQRGRLDRAQARLAIQQLVYTLQGVAGERLPVRVTLDGAPATTLLGVPVRTGFTAAPELDVLALVNITEPAEGSAVSGTFTATGRASSFEATVPWVLENAAGKEVLRGFSNAEGWVDKLYPWETSVDVSALKPGRYTFVARTDDPSNGEGGGPTEDTKRITIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VT67</accession>
    <name>A0A0Q8VT67_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phosphate starvation-inducible protein PhoH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_23425</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893919.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57713">
        <property type="protein sequence ID" value="KRC57713"/>
        <property type="gene ID" value="ASE19_23425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="445854at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003714">
        <property type="entry name" value="PhoH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02562">
        <property type="entry name" value="PhoH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PhoH" evidence="4">
        <location>
            <begin position="120"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="330"/>
            <end position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC57713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="353" mass="38635" checksum="E03A17B3CA637E42" modified="2016-01-20" version="1">MTDSTPTPISATRHTVVVPNSIDMVTLFGPGDEHLGIIEKRFGVQVHVRGNRVTLSGEAGELDLAEKLIGELVALLRTGQGITPDVVERVEAMLRAQTATSERPADVLSVNILSNRGRSIRPKTLNQKRYVETIDNHTITFGIGPAGTGKTYLAMAKAVQALQAKQVNRIILTRPAVEAGERLGYLPGTLTEKIDPYLRPLYDALHDMLDPELIPKLLAAGTIEVAPLAFMRGRSLNDSFIILDEAQNTTPEQMKMFLTRLGFGSKIVVTGDVTQVDLPSGTMSGLRIVEGILDGVEDLAFVKLTSHDVVRHKLVARIVAAYDEFDAKKEAKRELRQDRRLDSRAGNQKGDTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZ42</accession>
    <name>A0A0Q8VZ42_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896707.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59634">
        <property type="protein sequence ID" value="KRC59634"/>
        <property type="gene ID" value="ASE19_01010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="939031at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360504" evidence="1">
        <location>
            <begin position="28"/>
            <end position="548"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="548" mass="59069" checksum="39975D0CD008C35F" modified="2016-01-20" version="1">MTARRARWVSLLAGLLVVPVLGTSASADTPGPGDPTPDTSAQEVAEQALEVVEEIVDAPPPAPDAPVTPEEVGGRDLTLALHDLAAGYADLPKAQRARAARLLARPTDDLSTCQDPIDGDLICYGSRPVQTTCNSLICIHWVTTGADAIPAENDGPGGRFPGTAGGAPDYAEFTLATVTRVAQTYTAAGYRPVVGDGTAGGDARPDIYLGELSDDGAYGYCAADDYSVTAHVPAPSYCALDDDYAEFGIAPVAALRVTAAHEWFHAVQMSYDLNADRWMMEATATWIEDEVFDAINDNRNYLPYGPLARPSQALDLFSGAAPYGEWIFFRFLSERYPAEAGGLPVIVRDMWRRMAHDGGEGAANMYSVQAISSVLSARHTNLADQLAWFTVWNRRPSVFYDEGSAYRASPARSTFSLRPGGLSRLAKFRLNHLAAATVRFQKTSAMRGFWRLHVHVNLNDKAVGSRAVLTVKRKGQPARARLVWLNAFGNREFALAFGPEVQWVDVTGLNTSSRYRNCDAPTGDGSTTCHGTPVDDGRVQVIAGRATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZC6</accession>
    <name>A0A0Q8VZC6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01445</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896627.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59714">
        <property type="protein sequence ID" value="KRC59714"/>
        <property type="gene ID" value="ASE19_01445"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="266"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="354" mass="37802" checksum="D2E0140A8218C7B3" modified="2016-01-20" version="1">MAVVDHAPDVALLELVADLATLGTPDDATTRLPQMLDRLAGEVGAHACQVDAATTTSRGATTARWQTVATVGYPRAVSEHLGGEFLRSDHGRLVLDSHGPMRIETDTHDFRRTPHFHDVLHPAGYDDGISLALRAADDVVIGIVHLSACSADDLRTETLAGLPAIGRVLARVTEVASCSVRDVTLPPEYAVVRVDAHGRSRPVVGRDPLHLHVDETVQAIVHDILATGVRFATFLHQQDGRLVEVRIHAPEGRPTTHQPYVIATRPAESTLGLTLRQLEVLTAVATGAGNREIAEELFLTQRTVAAHVEAILTRLGTPSRAGAAAKATAAGVLLPSSRPDSVRSIAAVLRRPFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZE1</accession>
    <name>A0A0Q8VZE1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01540</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896609.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59730">
        <property type="protein sequence ID" value="KRC59730"/>
        <property type="gene ID" value="ASE19_01540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="17"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="40"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="203" mass="22781" checksum="599952B5249E0F43" modified="2016-01-20" version="1">MPDPSRTPTRRPRRSSAEVRELILGAAAELFAEKGFAATTTREIAERAEVRETTMFRIYDSKEHLYDEAVLRPFTDFLDSFTERWMATAAPVGHPAEVLEQFVTELHDLVSGNRALIAALDWNQATAAHAQASLDHLESVGRAIAERYELDFDVPVAIRIATASVVATTLLEDTLFPEDQRGERLRKELVRMLVGSTLYRPTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZT4</accession>
    <name>A0A0Q8VZT4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">Ornithine carbamoyltransferase</fullName>
            <shortName evidence="6">OTCase</shortName>
            <ecNumber evidence="3 6">2.1.3.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_23315</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>carbamoyl phosphate + L-ornithine = H(+) + L-citrulline + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19513"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="EC" id="2.1.3.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.3" evidence="3 6"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892504.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58983">
        <property type="protein sequence ID" value="KRC58983"/>
        <property type="gene ID" value="ASE19_23315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="988597at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016597">
        <property type="term" value="F:amino acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004585">
        <property type="term" value="F:ornithine carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1370">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01109">
        <property type="entry name" value="OTCase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006132">
        <property type="entry name" value="Asp/Orn_carbamoyltranf_P-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006130">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036901">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006131">
        <property type="entry name" value="Asp_carbamoyltransf_Asp/Orn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002292">
        <property type="entry name" value="Orn/put_carbamltrans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024904">
        <property type="entry name" value="OTCase_ArgI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00185">
        <property type="entry name" value="OTCace"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02729">
        <property type="entry name" value="OTCace_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00100">
        <property type="entry name" value="AOTCASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00102">
        <property type="entry name" value="OTCASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53671">
        <property type="entry name" value="SSF53671"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00658">
        <property type="entry name" value="orni_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="OTCace_N" evidence="9">
        <location>
            <begin position="3"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="OTCace" evidence="8">
        <location>
            <begin position="148"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="region of interest" description="Carbamoyl phosphate binding" evidence="6">
        <location>
            <begin position="128"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Ornithine binding" evidence="6">
        <location>
            <begin position="226"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="region of interest" description="Carbamoyl phosphate binding" evidence="6">
        <location>
            <begin position="262"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="290"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00016634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC58983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="305" mass="32364" checksum="9FD6404DD5344ED1" modified="2016-01-20" version="1">MIRSFLRDDDLAAAEQAEVLALAAKLKAEPYDHKPLAGPRTVAMVFDKPTLRTQASFAAGIAELGGHPMLVDGHLAGIGKRESVADVARVLGRQASQIVWRTYAQADLDEMAAFSGVPVINALTDEFHPCQLLADLLTVQEHKGTLAGLTVAFVGDAACNMGNSWALAGVTAGMHVRFGCPEGYAPDAEVLAQASALRTGGTVSVFDDPVAAVGGVDVVVTDTWVSMGKEDEAAARHEVFGPYALTTELVAHAKPDAIVMHCLPAYRGSEIAAEVIDGPQSVVWDEAENRRHAQKAIMKWLQDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM79</accession>
    <name>A0A0Q8UM79_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19685</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895877.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46101">
        <property type="protein sequence ID" value="KRC46101"/>
        <property type="gene ID" value="ASE19_19685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1897239at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015068">
        <property type="entry name" value="DUF1877"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035944">
        <property type="entry name" value="YfbM-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08974">
        <property type="entry name" value="DUF1877"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111069">
        <property type="entry name" value="SSF111069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="17409" checksum="D48460C68650E033" modified="2016-01-20" version="1">MGLQAAYTRIDEATLDRLTDLDPDHLVDEIDRLEEGGAPTTYLDKMWDGLHFALTGVPASAPIEGDRLSEAVVGVHAFDSDDFIGCTEAGELTAIVTALEAVDIDAVLARQDFAAFAAAEVYPSVWGEDPVRLRADLAEAFALLVEAHRAAASAGDHLLVTIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMM3</accession>
    <name>A0A0Q8UMM3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">C4-dicarboxylate ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20585</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896017.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46246">
        <property type="protein sequence ID" value="KRC46246"/>
        <property type="gene ID" value="ASE19_20585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="988124at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359215" evidence="2">
        <location>
            <begin position="33"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="330" mass="35161" checksum="06D81E7D4081E454" modified="2016-01-20" version="1">MHPRRTRTALVALLAALSLVALTSGCGVTRGSDDPDNRRLRLFIPNSPGGGYDLTGRAAARVMEDDELTGRFEIRNVVGASGTVAMQRLLNEEGSDDLMMVMGLGVVGAVYTNHSDATPLKMTPIARLVEEQEGILVPADSPFRTVNDLVAAWKKDPGGITVGGGSGNGGPDHLFPMQLADTIGVAPTDVNYISYDGGGPLTTALLGEKIDVGMSGLGEFEAQIDEGKLRVLAVSGDERLEGIDAPTLTEAGVDLVFTNWRGVLAPPGISDEQRDYLTGILTEMHDTEEWREALATNGWSDNFATGKEFEDFLVEQDARVADTLKELGFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMZ3</accession>
    <name>A0A0Q8UMZ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21250</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896133.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46362">
        <property type="protein sequence ID" value="KRC46362"/>
        <property type="gene ID" value="ASE19_21250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1515383at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007344">
        <property type="entry name" value="GrpB/CoaE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34822">
        <property type="entry name" value="PTHR34822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04229">
        <property type="entry name" value="GrpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="180" mass="19059" checksum="F1A1C0A168676A50" modified="2016-01-20" version="1">MRVTVLPHDPAWRAAFETVRADLAGALAGVPVAAIEHVGSTSVPGLAAKPILDIDVVVERAHLAAAIAALEAAGYTHEGDKGVPDRHFLRAHEGPDRHVYVCVAGALSLRNHLAVRDTLRADDELRDAYGAVKLALAAQELDGIEDYIDGKNDIVQRILTAAGITTDDRGAILAVNRKPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNH3</accession>
    <name>A0A0Q8UNH3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22250</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896304.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46536">
        <property type="protein sequence ID" value="KRC46536"/>
        <property type="gene ID" value="ASE19_22250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="199" mass="21343" checksum="99B429C27817C7A4" modified="2016-01-20" version="1">MAVQSGVYRGVSAQERAAERRRRLLEATLSVWADPATRTTMTAVCGEAGLTERYFYESFRGLDEALSAVLEDVATEIESRTLAAAEAAGADPAARITAAVTAFVDLLAADPRKGRVAIIEAAALPGLRGRRTELLRHFGRLAAEEAHHHAPRRHEDELAGLMFIGGMAEVVTAWLDGALEVDPEEVVATAARAYLGLYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNL8</accession>
    <name>A0A0Q8UNL8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Fibronectin type-III domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_21450</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896169.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46399">
        <property type="protein sequence ID" value="KRC46399"/>
        <property type="gene ID" value="ASE19_21450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1115824at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="SSF49265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359262" description="Fibronectin type-III domain-containing protein" evidence="3">
        <location>
            <begin position="30"/>
            <end position="569"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="4">
        <location>
            <begin position="467"/>
            <end position="569"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="569" mass="58451" checksum="6E97339C4788D174" modified="2016-01-20" version="1">MLRPGLRTAVLATVSLVVSVGGLAVPASADDLAPGTSGTSEDTVRFVADDWPAPPPTPVTLSRATTTALATYAPSEAFTLHSRPGAQRTIYLDFDGGSLLSTNFWLANGLSTLLFPGWSTDGSAAFSDAERSVVIEVWARMAEDFAPFDVDVTTDEPAAGGLFRSSSGDTSYGTRVAFTSGAAVQSSLCGGCGGLAWVGTFDSVTNGEVRSPAWVFPSSLGNKAKNLAEAGSHEAGHTLGLSHDGSTSSGYYSGTSLWGPLMGSPYSSSITQWSKGEYPNASNHEDDLAVVRANGLALRPDEAGDSVATALPFSQLRSSAGGRAVITSPDDEDWYSLTDCSGTVTVGAVPTDIGPNLDIGLEVRGPTGALLESSTPTTVRTYSGVTGLGANISLPLSGGPFHVTVSGIGSGTSWSGSGYGDYGSLGTYRLSVTGCTGADDPPPTDQPPVVPPVVVPPSGTSVTRPGAPGAPRVVAGARGGRRTVVVRWAAPARTGGTPVTGYRVLAYRVGPSGRYVGGTLAPRATRVLARSTHRIALALPRGRWVLKVRARNRLGWSAASRASRPVVPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNS7</accession>
    <name>A0A0Q8UNS7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">NH(3)-dependent NAD(+) synthetase</fullName>
            <ecNumber evidence="4 6">6.3.1.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">nadE</name>
        <name evidence="9" type="ORF">ASE19_19705</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4 6">
            <text>ATP + deamido-NAD(+) + NH4(+) = AMP + diphosphate + H(+) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:21188"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.1.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 7">Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from deamido-NAD(+) (ammonia route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the NAD synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.1.5" evidence="4 6"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896366.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46597">
        <property type="protein sequence ID" value="KRC46597"/>
        <property type="gene ID" value="ASE19_19705"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00333"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003952">
        <property type="term" value="F:NAD+ synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008795">
        <property type="term" value="F:NAD+ synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00553">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00193">
        <property type="entry name" value="NadE_ammonia_dep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022310">
        <property type="entry name" value="NAD/GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003694">
        <property type="entry name" value="NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022926">
        <property type="entry name" value="NH(3)-dep_NAD(+)_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23090">
        <property type="entry name" value="PTHR23090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02540">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00552">
        <property type="entry name" value="nadE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 5" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 5" id="KW-0520">NAD</keyword>
    <keyword evidence="2 4 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_synthase" evidence="8">
        <location>
            <begin position="28"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="49"/>
            <end position="56"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="158"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="209"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="258"/>
            <end position="259"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="266" mass="28002" checksum="D8F5E69FE54CFB68" modified="2016-01-20" version="1">MSAGAVDQATIRAALGVADEFDAVAESERRIDFLVDYLERSRASGYVLGISGGVDSTVAGRLASLACRRSGRSFTAMRLPYGVQADEADAGAAMDFIEPASTVTVDIKPAVDALHAATSADDVTVETADFVKGNIKARQRMAAQYAVAGRLGALVVGTDHAAEAVMGFFTKYGDGAFDVGPLLGLTKSRVVAIGRELGAPAHLVEKVPTADLEELRPALPDEVAHGVTYAEIDAYLVGEEVGERARTVIEDAYRRTAHKRQLPPGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UPA6</accession>
    <name>A0A0Q8UPA6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidase_M15_4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22380</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46655">
        <property type="protein sequence ID" value="KRC46655"/>
        <property type="gene ID" value="ASE19_22380"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009045">
        <property type="entry name" value="Hedgehog_sig/DD-Pept_Zn-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039561">
        <property type="entry name" value="Peptidase_M15C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13539">
        <property type="entry name" value="Peptidase_M15_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55166">
        <property type="entry name" value="SSF55166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M15_4" evidence="1">
        <location>
            <begin position="147"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="229" mass="24749" checksum="46DA790C9F7A825A" modified="2016-01-20" version="1">MGVHALPRTADGFGEVLPTPKALRVRRFRTTDLLPPPADGRFHATVGAVTPAIRTRMGATWSPACPVALAYLAYLNLTFRGFDGGVHTGELVVAADQADNVVSVFRTLFRASYPIEEMRLPTTADLEAPPTGDGNNTAGLVCRAARGQTSWSAHAYGLAVDVNPFLNPYSKGDLVLPERASAYLDRTRTQPGIIHPGDVVVRAFTRIGWTWGGSWSSLKDYQHFSATGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UQW4</accession>
    <name>A0A0Q8UQW4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Signal recognition particle protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Fifty-four homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ffh</name>
        <name evidence="10" type="ORF">ASE19_20095</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="7">The SRP-RNC complex is targeted to the cytoplasmic membrane.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">Composed of three domains: the N-terminal N domain, which is responsible for interactions with the ribosome, the central G domain, which binds GTP, and the C-terminal M domain, which binds the RNA and the signal sequence of the RNC.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the GTP-binding SRP family. SRP54 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895944.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46169">
        <property type="protein sequence ID" value="KRC46169"/>
        <property type="gene ID" value="ASE19_20095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="656414at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048500">
        <property type="term" value="C:signal recognition particle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008312">
        <property type="term" value="F:7S RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006614">
        <property type="term" value="P:SRP-dependent cotranslational protein targeting to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00306">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036891">
        <property type="entry name" value="Signal_recog_part_SRP54_M_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013822">
        <property type="entry name" value="Signal_recog_particl_SRP54_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004125">
        <property type="entry name" value="Signal_recog_particle_SRP54_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004780">
        <property type="entry name" value="SRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022941">
        <property type="entry name" value="SRP54"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000897">
        <property type="entry name" value="SRP54_GTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042101">
        <property type="entry name" value="SRP54_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11564">
        <property type="entry name" value="PTHR11564"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11564:SF7">
        <property type="entry name" value="PTHR11564:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00448">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02881">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02978">
        <property type="entry name" value="SRP_SPB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00962">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00963">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47446">
        <property type="entry name" value="SSF47446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00959">
        <property type="entry name" value="ffh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00300">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0733">Signal recognition particle</keyword>
    <feature type="domain" description="SRP54" evidence="9">
        <location>
            <begin position="271"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="444"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="107"/>
            <end position="114"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="192"/>
            <end position="196"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="250"/>
            <end position="253"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS00300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="522" mass="55781" checksum="7BC542C2438B6059" modified="2016-01-20" version="1">MFATLSDRLAATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVKDFVAAVKERARGEEVSQALNPAQQVVKIVNDELVTILGGETRRLRYAKTGPTVIMLAGLQGAGKTTLAAKLALWLKEQGKTPLLVACDLQRPNAVQQLQVNGEKVGVPVFAPEPGNGTGDPVSVAKASIEEAKRKLHDVVIVDTAGRLGVDAEMMAQAAGIRDAVQPDEVLFVVDAMIGQDALTTAQAFLDGVGYDGVVLTKLDGDARGGAALSIRQVTGRPVMFASTGEKMTDFDVFHPDRMASRILDMGDVLTLIEQAEKAFDQEEAMRAAEKLTGGDFTLDDFLAQMQQLKKLGSMTSILKMLPGMGQIRDQIENFDEREIDRVEAIIRSMTPAERANPKIIDGSRRARIAKGSGRAVSDVNGLVDRFFEARKMMMQMARGGGMPGMPGMPGMGGPGGGKRVSAKQKAKQTKGKGARRSGNPAKAAQDAAAAQARAAEAKPNPFGIGEDIDYEAAAENLQLPKDFSKFLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU57</accession>
    <name>A0A0Q8UU57_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21310</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896142.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46371">
        <property type="protein sequence ID" value="KRC46371"/>
        <property type="gene ID" value="ASE19_21310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="207"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="247"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="276" mass="29008" checksum="617908DDA69D2B92" modified="2016-01-20" version="1">MTAVEETVDKAVIGPLAGIGLQLVLAWRAVAALPVALTRYRGEIARVLAEVTLGSGIFLVGGGVVGVVLLLSTLTGTEVGLEGYQGLDVIGLAPLTGFISGYANTRELAPMVAALGFAARIGCGFTSRIGAMRISEEIDALEAMAIRPIPYLISTRLVAAWVIVLPLYLIGLVGTYVATDFMVTTFYGQSAGTYDHYFRTFVAPIDVFYSAIKVVVLTTVVTLIHCYHGFTASGGPEGVGRATGRAIRASIISLTVVDILLTLLLWGADQQVQISG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU84</accession>
    <name>A0A0Q8UU84_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acid phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17495</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893132.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48728">
        <property type="protein sequence ID" value="KRC48728"/>
        <property type="gene ID" value="ASE19_17495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1122642at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014636">
        <property type="entry name" value="RNaseH/PGlycerate_mutase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036922">
        <property type="entry name" value="RNaseH_PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="2">
        <location>
            <begin position="3"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="132"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="389" mass="41203" checksum="26CA7541AE8B011B" modified="2016-01-20" version="1">MVSPARVVVEADGASRQNPGPASYGAVLRDAATGAVIAEDARTIGVATNNVAEYSGLVAGLALAVEHAPGAVVEVRMDSKLVVEQMSGRWKIKHPDMKVLAAQAAEIAPPGTTYTWVPRADNGHADRLANEALDGTRSGVTVATPGDGIPDEPESAAEEASSPASGPGQPTTIVLVRHGVTPHTTGRRFSGGLGGDNPALSEEGRAQAAEVAEWLTELKESVDVVVASPVRRTRETADIVAAALGLPVEEEPGFAEMEFGEWDGLTFTEVAERDKERMEAWFADMAVPPPGGESFVEVRERVLAGLNRVLDAHEGRTVVVVSHVTPIKTLVAHAMEAPLDALFRMELAPAAVSVIAFWPDPRTGERRGSLRFFNALAPGRRTLRDTGRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUL3</accession>
    <name>A0A0Q8UUL3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18230</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a quinol + H(+) + oxidized coenzyme F420-(gamma-L-Glu)(n) = a quinone + reduced coenzyme F420-(gamma-L-Glu)(n)</text>
            <dbReference type="Rhea" id="RHEA:39663"/>
            <dbReference type="Rhea" id="RHEA-COMP:12939"/>
            <dbReference type="Rhea" id="RHEA-COMP:14378"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="ChEBI" id="CHEBI:133980"/>
            <dbReference type="ChEBI" id="CHEBI:139511"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the F420H(2)-dependent quinone reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893257.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48856">
        <property type="protein sequence ID" value="KRC48856"/>
        <property type="gene ID" value="ASE19_18230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1595916at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004378">
        <property type="entry name" value="F420H2_quin_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04075">
        <property type="entry name" value="F420H2_quin_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00026">
        <property type="entry name" value="hi_GC_TIGR00026"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00029371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="152" mass="16943" checksum="0009F2A5B76F527A" modified="2016-01-20" version="1">MPLAVRIGAVSWMPRLLPAIVRTDKALQGATGGRLTILDVAGLPNLMLTTIGRRSGQPRSNPLLCVPDGDRILIAGSYFGGPKEPLWVKNLEANPAVTARYAGRVHQLTARRLDGAERARAWRTMVDTWPNFTRYEQRTQREIKVFELVPRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUY7</accession>
    <name>A0A0Q8UUY7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Fic protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_20045</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895935.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46160">
        <property type="protein sequence ID" value="KRC46160"/>
        <property type="gene ID" value="ASE19_20045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1232677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003812">
        <property type="entry name" value="Fido"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036597">
        <property type="entry name" value="Fido-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040198">
        <property type="entry name" value="Fido_containing"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13504">
        <property type="entry name" value="PTHR13504"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02661">
        <property type="entry name" value="Fic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140931">
        <property type="entry name" value="SSF140931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51459">
        <property type="entry name" value="FIDO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fido" evidence="3">
        <location>
            <begin position="135"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="221"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="168"/>
            <end position="180"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="225"/>
            <end position="232"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR640198-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR640198-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="399" mass="43686" checksum="6387D7422B7FD46B" modified="2016-01-20" version="1">MDWAPHTFEVRPWRQRSPRGPAADRRLREITVSLPPYIRGLELPMDRALTAMATASAGDLSHLDLVHGRTLSALNHLQLRTEAVDSSKIENVDASLADYGRALLGVGANASAVSMASATTALTRMIADADATRSIRPEAILTAHRELFRRNPDEAHRAGSFRTTQNWVGGSDWSPLGSLHVPPPPETVPSYLEDLFAFANREDLPAVAQAAIVHAQFESIHPFIDGNGRIGRTLIHAVLRRRRATRHLTVPIASALVAHRESYFDALNDYRGGEARTIVAMMATAVRISTAESWVTATNVLAIRERWGEAAPGARPGHPLFRLLDLMAEEPILNVELVAGRLGTTEEVAQQAIDAAADAGVLVRARRSRRAPVWLAQDLLSEVEELSARIQDSARRLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV92</accession>
    <name>A0A0Q8UV92_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 10">Shikimate kinase</fullName>
            <shortName evidence="10">SK</shortName>
            <ecNumber evidence="3 10">2.7.1.71</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">aroK</name>
        <name evidence="11" type="ORF">ASE19_19225</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + shikimate = 3-phosphoshikimate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13121"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:36208"/>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.71"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="10">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 5/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the shikimate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.71" evidence="3 10"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893862.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49131">
        <property type="protein sequence ID" value="KRC49131"/>
        <property type="gene ID" value="ASE19_19225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1392851at2"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00088"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004765">
        <property type="term" value="F:shikimate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00464">
        <property type="entry name" value="SK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00109">
        <property type="entry name" value="Shikimate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031322">
        <property type="entry name" value="Shikimate/glucono_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000623">
        <property type="entry name" value="Shikimate_kinase/TSH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023000">
        <property type="entry name" value="Shikimate_kinase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01202">
        <property type="entry name" value="SKI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01128">
        <property type="entry name" value="SHIKIMATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 10 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="2"/>
            <end position="7"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="6"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="24"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC49131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="16853" checksum="DE6FBDE53875B75E" modified="2016-01-20" version="1">MGAGKTTVGRLVAEALGVPFADTDAVIEQRAGKSVQDMFVEDGEPAFRALERAVVAEHLAGHDGVLSLGGGAVLDPQTRELLAAHRVVFLRVGLAEAVKRVGLGVGRPLLLGNIRSRVKLLLDERTPIYEGLAQLVVETDERSPRAVADDIVTALEESP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVH7</accession>
    <name>A0A0Q8UVH7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21000</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896091.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46320">
        <property type="protein sequence ID" value="KRC46320"/>
        <property type="gene ID" value="ASE19_21000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1384440at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.620.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025859">
        <property type="entry name" value="AurF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012348">
        <property type="entry name" value="RNR-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11583">
        <property type="entry name" value="AurF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="301" mass="34122" checksum="138E7F35A7A08D96" modified="2016-01-20" version="1">MTLLDPAAGVAPEALSERLLRSTARQSYDHDVDIDWDAPPVPGLWWMQPERMSLYGTRTWDRLSEEQRITLSAHEVASIASVGIWFEIVLMQILLRDAYKADPRSARTQFALTEVGDETRHTVMFGRAIAAMGLPAYGPRPTPLKLARLGPLALHGASAYAGILIGEEPVDRWQREMMRDERVQPLTRMVARIHVTEEARHVTFARDELAKSVRGLGRTKLRWHQALTAQVAYVTMRSLVHPDVYAAVGLDPQEARREALGNEHYRETVAWMGEKVMPVLEENGMVSERDRKVWRASLLVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVS5</accession>
    <name>A0A0Q8UVS5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21540</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896186.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46416">
        <property type="protein sequence ID" value="KRC46416"/>
        <property type="gene ID" value="ASE19_21540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1707at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359473" evidence="1">
        <location>
            <begin position="27"/>
            <end position="594"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="594" mass="62319" checksum="825BF4093596A1F0" modified="2016-01-20" version="1">MRPRALARLVGGLTAAGLGLFPLTFAAPAHAGQVNVTIGIQGSGFVRVVEGSLEDGGADTCDQSQNLDHRVVLTCARIRNEEPFEAWVWLRPSVLYSPPYWEFTEWQGCDQLRERSGVQECGVGSSAFGTNGKFPVAVFRDTKAPVVSNVQAIQTPLTQGGFRFSWSHEGATRNECRIDGAPWATCATPTDVLLAEGARSFEVRAEDASGNLSEVRRIEVRSVDTDLYGRPGELVNSRTAQFWFATQAGNAYDCALDGVEVPCTNEGQVRFDNLGDGVHAFSVGARYGSWYDPTPARWTWTIDTAAPETTIDGGPAEGSHVASRGADFFLTTPGSAVRIGCTLDAAPIPCNHAAFVLRDLAPGEHVLTAAGTDAAGNTDPTPAVRRWIVDVAAPDTTLTGGPADGAIVTSTTASVTLGASEAGARVACTLDGKARACAHGLLTLSGLTPGTHTLSATATDLAGNTDPTAATRTWTVPVPARSLVRTTGWSLTSSSAAYGGKVLSTTRRNAVASYSVKAARRLALVVGGGPTHGTVRVYAGSRVLKTFSLRTGRALTRRVVPIAGFASAWSGKVRVVVVTSGRPVRLEGIAAPTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY38</accession>
    <name>A0A0Q8UY38_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15640</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893521.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50052">
        <property type="protein sequence ID" value="KRC50052"/>
        <property type="gene ID" value="ASE19_15640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1567807at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359527" evidence="2">
        <location>
            <begin position="34"/>
            <end position="677"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="151"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="677" mass="65351" checksum="6AEEB26C667B0D3E" modified="2016-01-20" version="1">MPVFSARRLLVGLCATGLAATGVAALAPDTASAALPAQCSTAGDAVTCLFTQQGNYYLPIPDAVTSMQVHAVGQRGADAVGAPGGRPAYVDATIPTADKDAFIVSLRADGGAGTDGGGNGGGSATVTRTVGGSTPVVQAAGGGGAGRGTVAGGAGGDAGSPGQGGLSSGVVTTPAGGGGAGTATAGGAGGLGASIKCNNLTWVGVRGGAGAAYAGGRGGADYSGNTVQQGGGGGGGGRFGGGAGGGGATCDGTTFADGGGGGGGTSLAPEGSTIGVAGSESYLVRITFTLQPRSTYTPTSLAFAPQEIRTASAAKSATVTNTGSLPLAMGTAAFEGPGAASFVKGTDTCSGTSLAVGASCQVGVRFSPTTATNLEATLSIPSSSPTSPHLVALTGTGLPPADLKVLGIGSIYSGKGQLVTRTLPVSGSKLMVYKLGVLNEDTVARSYRLRLTSAGAPATAEVWTTGFGAKVLAKDPSGNFITPTVAAGKVVTLDLRITPTTPGQHTSHVDVDLLSDLEALIEGVSTETNTPAPAKGTSSYELTAIQGGQPAIGGPVLDQTVTAPALNVGQTASYTVRLKNDGASAAAIGFKLALVSGCNAYTAVAKVGATNITAAAAAGTYVTPVRPIGQSTNVTITVKRVATGCRAFKLQVQSLNAGVPVRSSYLLTNAAYAAATD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ04</accession>
    <name>A0A0Q8UZ04_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA polymerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17150</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893788.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50319">
        <property type="protein sequence ID" value="KRC50319"/>
        <property type="gene ID" value="ASE19_17150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="658705at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001126">
        <property type="entry name" value="UmuC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00817">
        <property type="entry name" value="IMS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50173">
        <property type="entry name" value="UMUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UmuC" evidence="1">
        <location>
            <begin position="36"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="536" mass="57398" checksum="8A243618A3BA924C" modified="2016-01-20" version="1">MRTMVVWCPDWSVTAGLLELADARTDDDPVADVSAPAAVLANNRVTVCNATARAEGVRRGHRRRDAQARCPELVLLTANPDRDARWFEPVLSAVEEVRPGVAPLRPGLLALPAPGRFFARGGIGGEETAAAVLAEHLVGAGVWDCRFGTADDLYAAERAAREAPPQGCLVVPAGGSADFLRGLPVTALADDGPEGAELSDLLRRLGLVLLGDFAALSGASVSNRFGSYGVEVWRRVQGEEVTRLASRTPPPELTCEISFEPPLDSAEAVTFSVRTTAERFVAGLTDRQLVATGVRIEAEFEEGVSARTWLHPRCFTSRDLVDRVHWQLQAGMASSGLRSRKSTGETITSAVALVRFLPDTVEPAGAHVDGLWGGGADDQVVRGVARVQAMVGYDAVRVPVRQGGRAATDRQALVPWGERPVGLRPVDRPWPGQIPGPAPSRVFAEALEAEVVDEAGVAVAVTSRGQVTGAPWRFRIGRRWHPVGSWAGPWPVDESWWLGAGSGGRAARFQVVGVDGRAWLLRWQTPGAWQVEAAYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ67</accession>
    <name>A0A0Q8UZ67_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18805</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893355.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48953">
        <property type="protein sequence ID" value="KRC48953"/>
        <property type="gene ID" value="ASE19_18805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="8116at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018511">
        <property type="entry name" value="Hemolysin-typ_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00330">
        <property type="entry name" value="HEMOLYSIN_CALCIUM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359548" evidence="1">
        <location>
            <begin position="33"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="351" mass="35358" checksum="13D5F36A294B8EDC" modified="2016-01-20" version="1">MTSRTTRRTLAALGLAAAVTGTALVAAPPAQAAGTITVTFRHGALTVAGNDSANRIELVRRASGRIVVRADSRIVHRGGVPTVRNVEVIRVSTYGGNDVVRIRPGLRGVTVSAGNGADRVVGGSGADELRGGTGNDALFGGGGNDTLLGATGNDRLEGQGGHDRVLGDGGDDVLAAHAGRDILRGGTGDDAYHFDGALAGRHLLVEQAGEGTDEVRFFGPTGITLDLSATTYQQASAALSVRLSSGGAFENLHGGWGDDTLTGNALANELNGGEGKALLTGGAGADLIVAGDGGDFGIHTLADFADEDAIDLVTGFVSSGMGTSFVVVTTDDHDLGAFDGGSHMFVPADFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZJ4</accession>
    <name>A0A0Q8UZJ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19555</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49081">
        <property type="protein sequence ID" value="KRC49081"/>
        <property type="gene ID" value="ASE19_19555"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="174" mass="18755" checksum="7ABA3FF2D5404425" modified="2016-01-20" version="1">MTASDVGNGAEDYDSGGPILAGCLSTIENSFGKARAQLEGQWSYMTAGKPVSVDEYIISYPDDMDIASLFADVGTAIKKCPRVDVKSPKVSIRMNITESRSAQRLDVDGELGFVAVGQVGTPGRLDPIIMKVTYLLVGPNIVRVSTKALDEDSGFHEEMVQVAHRRLEAAFADR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZM1</accession>
    <name>A0A0Q8UZM1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_20780</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896050.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46279">
        <property type="protein sequence ID" value="KRC46279"/>
        <property type="gene ID" value="ASE19_20780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1584918at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008745">
        <property type="term" value="F:N-acetylmuramoyl-L-alanine amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06583">
        <property type="entry name" value="PGRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036505">
        <property type="entry name" value="Amidase/PGRP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002502">
        <property type="entry name" value="Amidase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013517">
        <property type="entry name" value="FG-GAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028994">
        <property type="entry name" value="Integrin_alpha_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015510">
        <property type="entry name" value="PGRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006619">
        <property type="entry name" value="PGRP_domain_met/bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11022">
        <property type="entry name" value="PTHR11022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01510">
        <property type="entry name" value="Amidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13517">
        <property type="entry name" value="FG-GAP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00644">
        <property type="entry name" value="Ami_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00701">
        <property type="entry name" value="PGRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55846">
        <property type="entry name" value="SSF55846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69318">
        <property type="entry name" value="SSF69318"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="PGRP" evidence="5">
        <location>
            <begin position="274"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="domain" description="N-acetylmuramoyl-L-alanine amidase" evidence="4">
        <location>
            <begin position="286"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="154"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="212"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="155"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="236"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="717" mass="76158" checksum="12FEE5ADE011BBD2" modified="2016-01-20" version="1">MSSYLTERPERSRRLRFVTLSQQLLALAVVVAVLTPAARTVTMDVRPAQPVDVVPSQVALQAAPVEVPTAPVDAEVDQYALTTSKGASASHARTTVRGSERATAGGGEVIDSDVVPVEGYGTVGVTWAPGSHVADDAIDVKVRTRTGNAWSGWTDAEYHDEHGPDPRTAEGRNARPGTDALLVGEVDAVQVKVTTDDGAPADMKLAVIDPGKADRTATEQPAIDTAKLATSAADGTDGTDPVTPTDPGTDDSVEQPPTTTDDLSLQAGVFTPKPKIYSRAQWGADESLRDKPSLSYYEVHAGFVHHTVNANNYTADQVPGIIRGIYSYHVRTRGWSDIGYNFLVDKFGRIWEGRYGGVDRPVVGAHTQGYNQYSFAMSAIGNYDVARPSSAMVTAYAQLFAWKLSLHGVSAGSTAQRVGSKTFQAINGHRDAGQTACPGKYLYAMIPTIRTKAQALQKSWRGRDVESNFTGSALPDLVLRRKGDGRGVIAPVVNVDGRYKLAPVVDTGRSFAGLKQVWRAGDWDRDGKADVLGQRTSDGALVLFRGLGDGKLAAPTVIRTGTSAWRLIAPVGDMTGDGWPDLMAEAKSGAAMRIIPGRGLRGFGNSYPAYSAVTGSAHIAAGRWNKEDGAPDSIVRNGSKLTVYFGNGPGGWTSTRLLPQTADGYDRLVGVPSVNGDWHSDLVARTTAGKYYLLKGTATSLAAPVPLATTTTYDLMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZS8</accession>
    <name>A0A0Q8UZS8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">ATP-dependent Clp protease proteolytic subunit</fullName>
            <ecNumber evidence="5 8">3.4.21.92</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Endopeptidase Clp</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5 11" type="primary">clpP</name>
        <name evidence="11" type="ORF">ASE19_21045</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 9">Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Fourteen ClpP subunits assemble into 2 heptameric rings which stack back to back to give a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 10">Belongs to the peptidase S14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.92" evidence="5 8"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896098.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46327">
        <property type="protein sequence ID" value="KRC46327"/>
        <property type="gene ID" value="ASE19_21045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1728970at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07017">
        <property type="entry name" value="S14_ClpP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00444">
        <property type="entry name" value="ClpP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001907">
        <property type="entry name" value="ClpP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023562">
        <property type="entry name" value="ClpP/TepA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033135">
        <property type="entry name" value="ClpP_His_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018215">
        <property type="entry name" value="ClpP_Ser_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10381">
        <property type="entry name" value="PTHR10381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00574">
        <property type="entry name" value="CLP_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00127">
        <property type="entry name" value="CLPPROTEASEP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00382">
        <property type="entry name" value="CLP_PROTEASE_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00381">
        <property type="entry name" value="CLP_PROTEASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5 8" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 8" id="KW-0720">Serine protease</keyword>
    <feature type="active site" evidence="6">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="5">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 7">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC46327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="201" mass="22294" checksum="11BF6766BE7D1D8B" modified="2016-01-20" version="1">MNYYIPQWEERTSYGIRRIDPYTKLFEDRIIYLGTPISDEVANAVIAQLLCLQSMNPDQDISIYINSPGGSFTALTAIYDTIQFIKPDVQTVCIGQAASAAAILLAAGAKGKRLALPNSRILIHQPYTEGTFGQTSDIEIQANEILRMRELLEKMISDHSGRSIDEVSRDIERDKILTAQGAIEYGLIDSVLESLKTPALV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V044</accession>
    <name>A0A0Q8V044_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">TP_methylase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_17465</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893127.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48723">
        <property type="protein sequence ID" value="KRC48723"/>
        <property type="gene ID" value="ASE19_17465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1706318at2"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008276">
        <property type="term" value="F:protein methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd11644">
        <property type="entry name" value="Precorrin-6Y-MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012818">
        <property type="entry name" value="CbiE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006365">
        <property type="entry name" value="Cbl_synth_CobL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014008">
        <property type="entry name" value="Cbl_synth_MTase_CbiT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036428">
        <property type="entry name" value="CobL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02467">
        <property type="entry name" value="CbiE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02469">
        <property type="entry name" value="CbiT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TP_methylase" evidence="4">
        <location>
            <begin position="6"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="395" mass="41067" checksum="12741B00F81257EA" modified="2016-01-20" version="1">MGGLRITVVGIGADGHLPPASAALVADAEVLLGGERHLALVPDVPGQDRHAWPRPLTSLATFLGEHEGRRVVALASGDPLVSGIGTTLLRLLGPDAVDVVPAVSSVALARARMGWSAEESTVVTLVGRELAALRRELADGRRLLVLSSDESTPAAVATLLDEAGFGTSTMHVLGNLGGADETVAVFPCPVPRLHVIALEVAGTGFASWAPGLPDDAFEHDGQLTKRDVRASALSRLAPAPGRLLWDVGAGAGSVAIEWLRAHPLTDAIAVEADPERAARISRNAGTLGVSRLEVVNDKAPDALTDLPRPDAVFVGGGATAPGLLDLCREALAPGGRLVVHGVTLETEQLLIGAFHEHGGELTRLAVEHVTPLGGRFTGWTPARAVTQWTWTKERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1N8</accession>
    <name>A0A0Q8V1N8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hemagglutinin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14850</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896438.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51371">
        <property type="protein sequence ID" value="KRC51371"/>
        <property type="gene ID" value="ASE19_14850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="304985at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359618" evidence="1">
        <location>
            <begin position="37"/>
            <end position="650"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="650" mass="66494" checksum="8F0C62EF4074FA04" modified="2016-01-20" version="1">MISRPRLRGRRRLMATLSCLTLALGAALVQPLVASASPTNPYVIDGSVIPDTAAADGELTDLFGAVKELGPKNASNTKIGVINKAAAPMLDYTNPNAQVDLRKAWLDLQRDSENNDWVYFAWERDSNSGSGFIAFEFMKNGAPALCNYGGTDAALIAGCNPWKNRQAGDFLILWDQNGSSTQLYKRIWSGTAPNLTLGAPVAIVNGVAAFSADKFKGEAAVNLTAEKLSDPGKCVAFANVIPSTVTGNSDTADYKDTILDSLPPISNCHGTVVTTPKDGDGGTIGGGGLSVGTSGSVKVRDSAVVDVVGGSAPPTGSVTFSLCKVGDVPDVCDAGEGTLIGATPLSQPVDPDNTSYPVTVLSPPAWVTSAGRYCWHSSWSGDANNQIPEATETPEAAANECFTVNPVTPTLTTNASAGGVLNDATVTDTAHLGGTAPQPTEAIIHTSAPAAGTSAGGSITFTLYGPGDCSTIAYSATVNVSGDGDYSPPSFKPTLIGTYHWKAVYSGNLPNTTGRTHNADCTVPAEDVTITAVDSSMTTAQSWIPNDSATVSAPAGGNLAGSVTFTLYATANCSGPAVAGYSATRPVAGASPQTVGTSFTTAITTTGTTAYSWKVTWASTNPAQRGIANSCRETSSVTVTNGGTATSTTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1W8</accession>
    <name>A0A0Q8V1W8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_15035</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896467.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51400">
        <property type="protein sequence ID" value="KRC51400"/>
        <property type="gene ID" value="ASE19_15035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="11"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="126"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="232"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC51400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="382" mass="40768" checksum="23B08ABDBA0C4ABE" modified="2016-01-20" version="1">MATTVDRLLPTEEAEELLALAREIATKELAPQVAEAEEAAVFPEAAYRLLGRAGLLSLPFDEELGGGGQPYEVYLQVVEEIATAWPSVGVGTSVHALTATVVAANASPEVRDAWLPRMLSGEWLGAYCLSEPQAGSDVSGIRTAAVRDGDAYVVKGTKQWISNGSCADYYVLFARTSEDPKRGLSAFVVPDGTEGMSFGAPEKKMGLHCDVTTQVLFDGARVPAAQLVGDEGAGMRVALSALDAGRLGIAAVATGIAQGALAYAVEYAKERQQFGRAIGEFQGMQFLLADMAADVERARASYLHAARLKDAGRPFSRQASIAKLTATDAAMRVTTDAVQVLGGNGYTREYPVERMMRDAKVTQIFEGTNQIQRMVIGRDLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V297</accession>
    <name>A0A0Q8V297_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Acyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_15750</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATP-dependent AMP-binding enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893542.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50073">
        <property type="protein sequence ID" value="KRC50073"/>
        <property type="gene ID" value="ASE19_15750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005324">
        <property type="term" value="F:long-chain fatty acid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004467">
        <property type="term" value="F:long-chain fatty acid-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030310">
        <property type="entry name" value="FadD17/FadD6-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43107:SF15">
        <property type="entry name" value="PTHR43107:SF15"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="2">
        <location>
            <begin position="11"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="3">
        <location>
            <begin position="398"/>
            <end position="472"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="500" mass="52909" checksum="90186256E5B0851A" modified="2016-01-20" version="1">MTVRDLLLARAEDDRPALRWREAGSVTSLSWREYVAAAARLAGELEARLDPAQPPHVGVLLPNGPAFALHLAAAGLGGHVVVGLNSTRRGDALDADAAKADCQLVVDSPDLALSTLSGTDVPDLPATDPTPDSLFMLIFTSGTSGSPKAVRVTHEKITGPGTHLVGRLGLTPDDVHYLSMPLFHSNAVMAGWAPALTTGAAFAVAPFSASGFLRDVRDFGATYANYVGKPLTYVLATPERADDADNPLRLVFGNEANEGDIAAFATRFGCEVVDSYSSTENAVIVQRRPGMPAGSLGMPLDGIRVLHDSGEETADAVFDGSGRLLNPGEAIGQLVNTTGRGAFAGYYNDDEAEADRMRGGMYWSGDLAYRDEDGWVYFAGRTGDWLRVDGENLAAAPIERILLRHPSIGEAAVYAVPDEKVGDQVACALILRGPLTPDALEAFLTEQADLSPKAWPRYVSVVTELPRTATNKVLKRTLSSAGVPAPGSAWVRAARGTSYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3T2</accession>
    <name>A0A0Q8V3T2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15990</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50115">
        <property type="protein sequence ID" value="KRC50115"/>
        <property type="gene ID" value="ASE19_15990"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="16453" checksum="30666EF80D411C39" modified="2016-01-20" version="1">MEIQPDDPRRPDVLALLEEHLADMYATSPAESVHALDPDALAAPGISFWTARDGDLLLGCAALKQLSGTHAELKSMRTATAARRRGVAGRLLDHVLAASRERGHTRVSLETGTEDYFAAARALYLTRGFTECPPFEGYTLDPNSTFLTLEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V445</accession>
    <name>A0A0Q8V445_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16635</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893696.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50227">
        <property type="protein sequence ID" value="KRC50227"/>
        <property type="gene ID" value="ASE19_16635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2039895at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="32"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="60"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="99"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="120"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="123"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="146" mass="15854" checksum="2152C612CB5A67BE" modified="2016-01-20" version="1">MPATPRVLAAAFTLSAVHTVYADLAGIADPTFTPTTPTTWLFYAVGFGSVWLARRPGRTAQLSLLAYLAMLLGVSVFYYPTTFTVEKQTVFGWFENDVYVGLLMIAAYLTLARLTLAEAPGSPAHPRPRPRRVLPSSPPSRPGVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4W2</accession>
    <name>A0A0Q8V4W2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Precorrin-4 C11-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_17460</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893126.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48722">
        <property type="protein sequence ID" value="KRC48722"/>
        <property type="gene ID" value="ASE19_17460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1185397at2"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046026">
        <property type="term" value="F:precorrin-4 C11-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11641">
        <property type="entry name" value="Precorrin-4_C11-MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006362">
        <property type="entry name" value="Cbl_synth_CobM/CibF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003043">
        <property type="entry name" value="Uropor_MeTrfase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00839">
        <property type="entry name" value="SUMT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00840">
        <property type="entry name" value="SUMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="7">
        <location>
            <begin position="3"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC48722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="255" mass="26496" checksum="127AA14E631BD6F6" modified="2016-01-20" version="1">MTVHFVGAGPGAADLITLRAAALLGAADVVLYPGTYIDTEVLSHCRADARLVDTQELDLDRITAVMVQADADGRDVVRLTSGDPSLYSALHEQGRRLDAAGVAWDVTPGVPAYAAAAAIVGHELTVPLVAQSVVLTRTQARSTAMPETESLAAFAATGATLVLHLAITRTAALMTELAPFYGADCPVAVVSRASQPEELVLRGTVGTIATLVEDAGLKQAAVILVGPALAPDGSASDAESYLYSPERVARKERLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V534</accession>
    <name>A0A0Q8V534_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893219.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48818">
        <property type="protein sequence ID" value="KRC48818"/>
        <property type="gene ID" value="ASE19_18030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1264541at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019808">
        <property type="term" value="F:polyamine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015846">
        <property type="term" value="P:polyamine transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001188">
        <property type="entry name" value="Sperm_putr-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00909">
        <property type="entry name" value="SPERMDNBNDNG"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="399" mass="43815" checksum="7A82EA975D08F874" modified="2016-01-20" version="1">MRRPFPGGGSLAGSSGISRRTALRGGAGLALGAASLGVLPLFGTPDRKQDPASCTTRDLSDSERRLIVSNWPGYMDEDDEGYVSTLTEFQKRTGIKVDYTADVNDNLEFFAKVVNQLGSCETSKRDMFMLTDWMAARMIQIGWIQPLDASKVPNLHANLIDSLAGVGWDPERKYSAPWQSGLTGIAYNKSKVKDVRTFEELLTRKDLKGRVTLLTEMRDTMGLALLSQGADPAQFTPDEWDNALDAVSRARKDGQIRAFTGNDYIQDLAAGNVLACEAWSGDVAAAEDPNIVFVAPEEGQMIWADNMLVPNLASHQGNAEEWINYYYEPEVAAKLAAYVWYICPVKGAQEAMEKVDPSLVDNPLIFPDAKSLATTHSFMALEEFQVRAYEKDFADVSGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5I8</accession>
    <name>A0A0Q8V5I8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Pyridoxine/pyridoxamine 5'-phosphate oxidase</fullName>
            <ecNumber evidence="5">1.4.3.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">PNP/PMP oxidase</fullName>
            <shortName evidence="5">PNPOx</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Pyridoxal 5'-phosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">pdxH</name>
        <name evidence="10" type="ORF">ASE19_09555</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>H2O + O2 + pyridoxamine 5'-phosphate = H2O2 + NH4(+) + pyridoxal 5'-phosphate</text>
            <dbReference type="Rhea" id="RHEA:15817"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:58451"/>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
            <dbReference type="EC" id="1.4.3.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>O2 + pyridoxine 5'-phosphate = H2O2 + pyridoxal 5'-phosphate</text>
            <dbReference type="Rhea" id="RHEA:15149"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:58589"/>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
            <dbReference type="EC" id="1.4.3.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 7">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
        <text evidence="5 7">Binds 1 FMN per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxal 5'-phosphate from pyridoxine 5'-phosphate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the pyridoxamine 5'-phosphate oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.3.5" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894608.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52670">
        <property type="protein sequence ID" value="KRC52670"/>
        <property type="gene ID" value="ASE19_09555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1542844at2"/>
    <dbReference type="UniPathway" id="UPA01068">
        <property type="reaction ID" value="UER00304"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004733">
        <property type="term" value="F:pyridoxamine-phosphate oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008615">
        <property type="term" value="P:pyridoxine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01629">
        <property type="entry name" value="PdxH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000659">
        <property type="entry name" value="Pyridox_Oxase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019740">
        <property type="entry name" value="Pyridox_Oxase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011576">
        <property type="entry name" value="Pyridox_Oxase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019576">
        <property type="entry name" value="Pyridoxamine_oxidase_dimer_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10851">
        <property type="entry name" value="PTHR10851"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10590">
        <property type="entry name" value="PNP_phzG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01243">
        <property type="entry name" value="Putative_PNPOx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000190">
        <property type="entry name" value="Pyd_amn-ph_oxd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00558">
        <property type="entry name" value="pdxH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01064">
        <property type="entry name" value="PYRIDOX_OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 5 7" id="KW-0288">FMN</keyword>
    <keyword evidence="4 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-0664">Pyridoxine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative_PNPOx" evidence="8">
        <location>
            <begin position="38"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="PNP_phzG_C" evidence="9">
        <location>
            <begin position="177"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="13"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5 6">
        <location>
            <begin position="196"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <begin position="66"/>
            <end position="71"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <begin position="81"/>
            <end position="82"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <begin position="145"/>
            <end position="146"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007301"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000190-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000190-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF10590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC52670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="217" mass="24148" checksum="5658BE8075D1B66D" modified="2016-01-20" version="1">MASEQQADLAVLRREYGDAGLDETSADPDPWVQWRRWFDDAVAAGIHEPNAMVVATVDPDGGPSSRTVLLKGVGPDGFRFFTNTASRKGTALAEEPGCALLFPWHPLERQVRIDGVAVPLEEDDVAAYFASRPRGSQLGAWASPQSQVVTGRDELDRRYREVEERFAGQDVPVPPTWGGYRVVPARFEFWQGRPGRMHDRLRYTAADEGWAIDRLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V628</accession>
    <name>A0A0Q8V628_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10270</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894727.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52794">
        <property type="protein sequence ID" value="KRC52794"/>
        <property type="gene ID" value="ASE19_10270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1928091at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="1">
        <location>
            <begin position="7"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="353" mass="37811" checksum="D6AE0A6CD073785A" modified="2016-01-20" version="1">MGVGRTVLVTGVSRDLGRTFARTLATDPGVNRVIGVDVMPPRGDLGDVTFVRADIRNPVIAKVIAKEDVDTVVHMSVIATPGSAGARGTMKELNVIGSMQLLAACQKAETVRQLVVKSSTTAYGASSRDPAMFTEDMEPRRPPRSGYAKDVNEVERYVRGFARRRPDVTVTLLRCANVIGPRVVSPLASYFRLPVIPTVLGFDPRLQFLHETDLNRVLRHAVLSDVAGTFNVAGDGLLMLSQALRRMGRTSVPLPGPAFGGVGSVLKSARMADLSPELVAFLTYGRGVDTTRMRTELGFEPSYSTAAAFAEFVGTLPPGGRRAERVLASLADRLPPVDEDRPAQLTVAGGKDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6A3</accession>
    <name>A0A0Q8V6A3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09650</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894625.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52687">
        <property type="protein sequence ID" value="KRC52687"/>
        <property type="gene ID" value="ASE19_09650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1688876at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="301"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="325" mass="34583" checksum="F2ECD778B87546A1" modified="2016-01-20" version="1">MTRIEKILLLLLPLPFGIGFLTPGVAQEPIASQAAFHFTDPEIVESSGLVARDGLVVTVNDSGDSNRVFTVDPATGDTVGVTRWQGEATDIEALAPASAGHVWVGDTGDNMEDRDSIRVTEVPVGRGDREVRATTYRLTYPDGAHDAETLMTDPATGRLYVVTKGFIGRVFAAPAKLDPDGTNELTPVDEVLGIATDGAFLPDGRHLVVRNYHQAAIYTWPALGRVALMDLPAQQQGEGIAVREDGEVLLSSEGAESDVLRVELPADVRAALAEVPAAADEAPDEAADEAPTDAYEDQGVWWPWALGGVAGLVMVGVLLRSLRPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6G2</accession>
    <name>A0A0Q8V6G2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10695</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0047 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894803.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52870">
        <property type="protein sequence ID" value="KRC52870"/>
        <property type="gene ID" value="ASE19_10695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1691156at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.460">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001602">
        <property type="entry name" value="UPF0047"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035917">
        <property type="entry name" value="YjbQ-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30615">
        <property type="entry name" value="PTHR30615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01894">
        <property type="entry name" value="UPF0047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004681">
        <property type="entry name" value="UCP004681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111038">
        <property type="entry name" value="SSF111038"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00149">
        <property type="entry name" value="TIGR00149_YjbQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="134" mass="14515" checksum="475D424F2016C29F" modified="2016-01-20" version="1">MDSETRTYRTGDREAVLDLTRDCEAYVADRADGLLHVFVPHATAGIAILETGAGSDDDLLAALADLLPADDRWRHRHGSPGHGRSHVMPALVPPYATVPVLGGRLALGTWQSICLVDLNVDNEVREVRFSFLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V755</accession>
    <name>A0A0Q8V755_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11590</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53028">
        <property type="protein sequence ID" value="KRC53028"/>
        <property type="gene ID" value="ASE19_11590"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="125" mass="13658" checksum="4B4F820EE06A5913" modified="2016-01-20" version="1">MTWAEVILIAGAPVALGIIAIWRIRSGWGGRSSRLVQGAPWSEFVVSLVYAVMPFTAGMFLMALGGGLGARLSYETGAGWVRIAGLVTVVVGLACMGWGVKEFRSPSSWRSRPEWLREYEARARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7I9</accession>
    <name>A0A0Q8V7I9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dimethyl sulfone monooxygenase SfnG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896509.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51443">
        <property type="protein sequence ID" value="KRC51443"/>
        <property type="gene ID" value="ASE19_15280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024014">
        <property type="entry name" value="DMSO2_SphG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04021">
        <property type="entry name" value="LLM_DMSO2_sfnG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="16"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="373" mass="42181" checksum="6265B4A021440052" modified="2016-01-20" version="1">MTDQIFDREAFAQPLKFAYWVPNVSGGLVVSKIEQRTDWSYDYNVQLARLAENNGFEYALSQVRYIASYGAAYQHESTSFSLALLLATERLKVIAAVHPGLWQPGVLAKFIATADQISGGRAAINVVSGWFKDEFTKLGEPWLEHGERYRRAEEFIRYVREIWTSEHAELNGDFYRLHDFDLKPKPLSSPERPHPEIFQGGNSTDARGMAGRVSDWYFANGNTPDGISEQIRDVTDVATVHGRTVKFGLNGFFIGRDTEAEARDVLREIVDKADREAVEGFGAAVKQAGQSTGDKKGMWQDSEFADLVQYNDGFRTGLIGTPEQIATRMIEYKKRGVNLFLLGFLHYLEDVEYFGREVLPLVRELEAAELERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7K5</accession>
    <name>A0A0Q8V7K5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DUF3817 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_13390</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895802.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53340">
        <property type="protein sequence ID" value="KRC53340"/>
        <property type="gene ID" value="ASE19_13390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1917173at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023845">
        <property type="entry name" value="DUF3817_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12823">
        <property type="entry name" value="DUF3817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03954">
        <property type="entry name" value="integ_memb_HG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="54"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="82"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3817" evidence="8">
        <location>
            <begin position="7"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="119" mass="13385" checksum="B79A20ABBDA8F18F" modified="2016-01-20" version="1">MTKLFPVYRVLALVVGVLLLVGTLDALLKYGHHIIAADSWAVGSDLQQFGEDFAWIWMFHGFIYIAYVVVAFLLSTAARWSLPQLALLLIAGLVPGLIFWVEHRVAARLREEHPELART</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Z7</accession>
    <name>A0A0Q8V7Z7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidoglycan glycosyltransferase</fullName>
            <ecNumber evidence="2">2.4.1.129</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_13350</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n)-di-trans,octa-cis-undecaprenyl diphosphate + beta-D-GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate = [GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n+1)-di-trans-octa-cis-undecaprenyl diphosphate + di-trans,octa-cis-undecaprenyl diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23708"/>
            <dbReference type="Rhea" id="RHEA-COMP:9602"/>
            <dbReference type="Rhea" id="RHEA-COMP:9603"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60033"/>
            <dbReference type="ChEBI" id="CHEBI:78435"/>
            <dbReference type="EC" id="2.4.1.129"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.129" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895796.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53334">
        <property type="protein sequence ID" value="KRC53334"/>
        <property type="gene ID" value="ASE19_13350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="423699at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018365">
        <property type="entry name" value="Cell_cycle_FtsW-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001182">
        <property type="entry name" value="FtsW/RodA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30474">
        <property type="entry name" value="PTHR30474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01098">
        <property type="entry name" value="FTSW_RODA_SPOVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00428">
        <property type="entry name" value="FTSW_RODA_SPOVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="9" id="KW-0132">Cell division</keyword>
    <keyword evidence="4" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="49"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="77"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="108"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="135"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="176"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="213"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="236"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="259"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="334"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="376"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="409"/>
            <end position="428"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="461" mass="49091" checksum="796365F0BDA3A747" modified="2016-01-20" version="1">MASNSALMGFVHRRRRGAELFLLVLALVVGIGAYAAVGLGVDGEVPTNLIGYGGWLTILVVAAHVAVRIVAPYADPVLLPVVAALNGLGLAVIHRLDLAKDTALASQQLTWMTLGVVLFVGTLIILPDHRLLARFTYTSGLTAIVLLILPMLPGIGRTINGAKIWIALGPFSFQPGEVAKVLLVITFAGYLVVHRDALALAGRRVVFIDLPRGRDLGPILMMWAVSLGILVLQRDLGSSLLFFGLFLVMLYVATERPGWLVVGGLLFFGGATAAFKLFSHVQSRVDIWLDPFADPDGSGYQLVQALYGFAWGGMVGRGLGEGMPEKVPYAESDFILAAIGEELGLTAVMAILLLYGLVVERALRAALISRDGFGKLVATGLAAVFALQIFVVIGGVTRLIPLTGLTTPFLSYGGSSLVANWVIIAILLRISDQARRPLPDLTEAEDDPDEQATQIVKVVPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8A7</accession>
    <name>A0A0Q8V8A7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5 family acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14660</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896938.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53564">
        <property type="protein sequence ID" value="KRC53564"/>
        <property type="gene ID" value="ASE19_14660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1526822at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="10"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="159"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="307" mass="32759" checksum="3E47ADB6B1570C7A" modified="2016-01-20" version="1">MSSPELPHGLTTRPLVIGDSAEVTAVIVEQELHDIGSAEIEEGDLLGEWQRPSYDLTASTVAVLDGERIVAYAEHLGGERYDAAVLPSYRGRGIGTWLAHWVQSVARSSGAAIVGMPVPEGSAGDRLLTALGYGVRWTSWVLRLPPGATIETRPLPDGYALREATEADREQVWTVAEDAFLEWSARERESIGDFAARVWERPGFEPWNLQVVTAPDGSVAGVANVWNTAADAAGDVDTYVSKLAVAPAHRDRGLAQALLVASFAAGRSRGATSSSLSTDSRTGALSLYEKVGMGPASVWVHRAITLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8J0</accession>
    <name>A0A0Q8V8J0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14420</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896977.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53526">
        <property type="protein sequence ID" value="KRC53526"/>
        <property type="gene ID" value="ASE19_14420"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359811" evidence="1">
        <location>
            <begin position="35"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="15403" checksum="2FB8AA1C83B52F51" modified="2016-01-20" version="1">MTTTLRRAAFLLFLPLLLLAGLAVSTTTATKADAASSTTGDLTVCAYGVATRNVPIQLHLWSGSSWSVIRTGTTGTGCGTWRDVPANRWLAVTVKPTTYGSRDTCAYYPGSWYVLGGGTSSFYVSPWQSARVDLTVRKTYVYC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8M5</accession>
    <name>A0A0Q8V8M5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADPH:quinone oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897032.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53471">
        <property type="protein sequence ID" value="KRC53471"/>
        <property type="gene ID" value="ASE19_14125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="831053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="10"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="325" mass="34122" checksum="8E322DF0D1F3C007" modified="2016-01-20" version="1">MRAVMHQEFGDPAEVLTVEDVEVPEPGPGEVRVRTLLAAIHNHDLWTIRGSYGFKPELPARSGTEAVGVVEALGEGVEHLSVGQRVASGGTFGAWAESFVAKAGGLIPVADGISDEVAAQLVSMPFSAISLLESLDLQPGDWMVQNAANGAVGRMVAQLGAARGVNVIGLVRRTAGVEELAAHDIDRIVATDTDGWADQVRAIAGDAPIKVGVDSVGGRASGEVMSLLAENATLVVFGAMQSPTMEISSGDVIFKQATVRGFWGSTVSRTMPAEQRRALFGELIQRIGEGSLTLPVDTIYSFDEVRTAAAANMEPGRTGKILLRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8W1</accession>
    <name>A0A0Q8V8W1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RNA polymerase subunit sigma-24</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_14610</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53556">
        <property type="protein sequence ID" value="KRC53556"/>
        <property type="gene ID" value="ASE19_14610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1469807at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="22"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="117"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="412" mass="44715" checksum="9D5C67D29725F326" modified="2016-01-20" version="1">MTVPDTLPEATAQAAVERIFREEYGRLIASLVRRFGDIDIAEEAAGEALLTALEKWPEAGVPPNPGGWLTTTAGNRAIDRLRREKLRDGKHEAAAMIHDPTPHEPTGVIADDRLRLIFTCCHPSLAPEARIALTLRLLGGLTVAEIAAAFLVQETTMAQRITRAKAKIKGANIPYRVPGTADLPDRVGAVLAVLLLIFNEGYLSSGDGDPVRADLTGEAIRLARILHQLLPDDLEATGLLALLLLTESRRTSRVRGGELVPLEEQDRGGWDRALIAEGHDLVRRCLAANRPGRYQVLAAVNAVHTDAPTAAATDWSQIAALYDQLARIDPSPIVALNRAVAVAELDGPEVALAIVDRLPLDGYHAWHATRAELLRRLGRSPESREQYDAALAVCDNVAERAYLLRRKGQLTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9F4</accession>
    <name>A0A0Q8V9F4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cytochrome</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07015</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895263.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53832">
        <property type="protein sequence ID" value="KRC53832"/>
        <property type="gene ID" value="ASE19_07015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="816674at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002397">
        <property type="entry name" value="Cyt_P450_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00359">
        <property type="entry name" value="BP450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0349">Heme</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="410" mass="45743" checksum="964A6050A0AE41A8" modified="2016-01-20" version="1">MATSTASELVFDPYDYAFQDDPYPTYQRLRDEAPVFHAAADDIWVISRHQDVFDVLRNDTVFSNRMGVSLDASAWNPEAHRVMSFLGLDGAEQSRIRKLVSAAFTPRRVRELTPEVQALTERYLERTFAAHAERGEADWIDDFAGKLPMDVISEMMGVPVADRDEVRRLADLVVHREDGVRDVPQAGMEASFALFGYYGEMVAQRRRTPTDDLTSALVAAEMDGDRLTDGEIMAFLFLMVVAGNETTTKLLGNALFHLSANPAQKAQVLDDVALVPTWIEETLRHDTSSQMLARYVTEDVEVGGVRIPGGSKALVLLGSANRDDRVFTDPTTFDITREKSELSEILSFGTGRHFCLGANLARLEARVVLEELVRRVADFEVHADRAVRVHSTSVRGFASLPVTFTERRGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9P2</accession>
    <name>A0A0Q8V9P2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glutamyl-tRNA amidotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08275</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895485.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54053">
        <property type="protein sequence ID" value="KRC54053"/>
        <property type="gene ID" value="ASE19_08275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498741at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016884">
        <property type="term" value="F:carbon-nitrogen ligase activity, with glutamine as amido-N-donor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1510.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003789">
        <property type="entry name" value="Asn/Gln_tRNA_amidoTrase-B-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023168">
        <property type="entry name" value="GatB_Yqey_C_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019004">
        <property type="entry name" value="YqeY/Aim41"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042184">
        <property type="entry name" value="YqeY/Aim41_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28055">
        <property type="entry name" value="PTHR28055"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09424">
        <property type="entry name" value="YqeY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89095">
        <property type="entry name" value="SSF89095"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="15870" checksum="4ADB98B16B2425B8" modified="2016-01-20" version="1">MSLKERLRTDLTSAIKARDEVRSSTLRMILTAVTNAEVAGKVAKELTDDDVLTVLSSEAKKRREAAVAFEEGNRPEMAAKERAEAAVIQDYLPAQLGPEEIATIVTAAVEQAGAAGAGPKAMGQVMGIVTPQVKGRADGAAVAAEVRRQLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9R0</accession>
    <name>A0A0Q8V9R0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07055</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895271.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53839">
        <property type="protein sequence ID" value="KRC53839"/>
        <property type="gene ID" value="ASE19_07055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1771853at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05829">
        <property type="entry name" value="Sortase_F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005754">
        <property type="entry name" value="Sortase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023365">
        <property type="entry name" value="Sortase_dom-sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042001">
        <property type="entry name" value="Sortase_F"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04203">
        <property type="entry name" value="Sortase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63817">
        <property type="entry name" value="SSF63817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359830" evidence="2">
        <location>
            <begin position="37"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="210" mass="21999" checksum="6E338FE35C38B2E3" modified="2016-01-20" version="1">MTRTRKLLTHLATALAILALVAVASALFLGLHRAEPATEPAAVVPPVVAAPAPPVHVTPAPAKRVAAPTRIEVPAIGVDEKLTGRGLKADGSLDTPDFGKAAWYSPGPRPGEPGGAVVVAHVHGPDGPDVFWDLATLRPGDTIRVHRPGAVATFVVDRVEDVPKEQLPYDRIWPDTGRSLLRLITCGGQRTAAGYPDNTIVFAHLVGTAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9V0</accession>
    <name>A0A0Q8V9V0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">PAP2_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_08115</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54028">
        <property type="protein sequence ID" value="KRC54028"/>
        <property type="gene ID" value="ASE19_08115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026841">
        <property type="entry name" value="Aur1/Ipt1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14378">
        <property type="entry name" value="PAP2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="47"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="90"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="170"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="195"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="266"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="295"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="320"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="domain" description="PAP2_3" evidence="7">
        <location>
            <begin position="135"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="340"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC54028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="361" mass="40080" checksum="44065075404CFACC" modified="2016-01-20" version="1">MYRRAYTLLIGTAALMLGLAVFAAVKLDRRLLDPEGSFLGPSYIRLPLLLIGALLLDLLPLTLWRARGRASRVVPIVRHRLRTHWTRERFTLVAVGVFSFYLTYVSYRNLKSFLPFVRSAPDATADKPRALSYDRELHLLDKVIFFGHDPAEVLHGIFGTTITAEVLSPIYLMFLPLVPLGVTAWLVWSRNMSFGYWFVTAQCLAWSLGTLSYYLLPTLGPGIAYPSLYYSIDGLAHTGTTDLMNSIVRARGNVLYGGATGSVNSIAGFASLHCAITLLFALMVQYTLRSKILKWVFWVNFGLTVIATLYFGWHYVADDIAGIAIAVVSFYVGGVASGQKFDRRGHSHPTTTTSKVPVDAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA05</accession>
    <name>A0A0Q8VA05_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08895</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895590.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54158">
        <property type="protein sequence ID" value="KRC54158"/>
        <property type="gene ID" value="ASE19_08895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="816674at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002397">
        <property type="entry name" value="Cyt_P450_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00359">
        <property type="entry name" value="BP450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="454" mass="51068" checksum="C38D272AB5E8E19E" modified="2016-01-20" version="1">MTATDNEFGVDFDELFAEEEEEDFLPATGVDKPAYAEVDISTKAFWAQTSEVRDEAFAELRRTDPVSWQRPVEDAVTPDPDDPGYWALVKHEHITQASKDNETFISGQGVLFDMLPRLFLQMTQSFLAMDDPRHQKLRMLVSAAFTPKQVKKISDDIKRAAKEIVDDLVADGAGEVEVVSKVAEKLPNRMFCDLFGVPEELRELTAIAAGDIIAWADLERLGDRMPDEVQVEAAAILHDIAEQLIDIRKQAETPAEDLFTNLMNAEVEGEHLNEFEIGAFFVLMAVAGTDTTKHTTSFALKALAENPDQLAWLREDFDGRIGVAIEEFIRYASPVMTFRRTCVKETELGGKKIIPGDKVVFFYPSGSFDEDVFEDPWRFDLARDPNPHLGFGGGGVHFCLGNQLAKQMLRAIFEELVFRLESWETGEPELLGTNFMRGVKRMPFRFVPAMVKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA26</accession>
    <name>A0A0Q8VA26_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">NADH dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_07680</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NADH dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895382.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53951">
        <property type="protein sequence ID" value="KRC53951"/>
        <property type="gene ID" value="ASE19_07680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="403436at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003954">
        <property type="term" value="F:NADH dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006116">
        <property type="term" value="P:NADH oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045024">
        <property type="entry name" value="NDH-2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43706">
        <property type="entry name" value="PTHR43706"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="391"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="4">
        <location>
            <begin position="22"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="478"/>
            <end position="497"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="497" mass="53726" checksum="A08A1B3050B48CC4" modified="2016-01-20" version="1">MAAGDTQPDLPDRVIVPRSDKHQVVVIGSGFGGLFGTKALRKADVDVTMIAKTTHHLFQPLLYQVATGILSEGEIAPPTREVLANQKNAQVLLGEVTEVDLENRLITSHVLGRELVTPYDSLIVAAGAGQSYFGNDHFAEFAPGMKSIDDALELRGRIFGAFEMAELGAARGENVDHLLTFVVVGAGPTGVEMAGQIAELAHRTLTRDFRAISTRQARVILVDAAPQVLPPFGAKLGKWTQEKLEALGVEVLLGAMVTDVDERGLTVKYKDGSEQRIEAVAKVWAAGVQANPLGKQLAEQTGAPLDRAGRISVNPDLTLPGYPEVFVVGDMISLDNLPGVAQVAIQGAKYAAKEIDGRLQGKPAQAPFKYFDKGSMAIISRFRAVAMVGKLRLTGVVAWLMWLVVHLFYITGFKNRVTAVIRWAVSFLGKGRSERTSTEQQIFARVALQRLARGATDLVSEPGEYDDAERRRTELEAQAAEEARLSDENKRGVKVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VB12</accession>
    <name>A0A0Q8VB12_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_11795</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894995.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53065">
        <property type="protein sequence ID" value="KRC53065"/>
        <property type="gene ID" value="ASE19_11795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041490">
        <property type="entry name" value="KstR2_TetR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17932">
        <property type="entry name" value="TetR_C_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="5">
        <location>
            <begin position="8"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="210" mass="22408" checksum="232350A9EC09BAB7" modified="2016-01-20" version="1">MAAPSRAEATRARLLEAAVAAFAEKGFHGTTTRDIAGAAGMSPAAMYVHHKSKEELLFLISREGHEQALATVRDARASATDPVGQVAAVGRAFAMFHVQHHTVARVLNYELAALSAEHRAEIDELRTGIDRELRALVAAGVEAGAFDTPSPALAATALASMGIDIARWYREDGEWTPEEIGDYYADLALRLAGATGRPAARGGRRPRAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBJ5</accession>
    <name>A0A0Q8VBJ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11585</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53027">
        <property type="protein sequence ID" value="KRC53027"/>
        <property type="gene ID" value="ASE19_11585"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="80" mass="9101" checksum="D4EC32D9EFB11585" modified="2016-01-20" version="1">MKVVFTAMPFAIAAFFVALGGGLCARLAYDTGAEWIRIAGLIAFAVGFVCFAWGLKEFRSPSRWRPRPEWLREYEARARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCF4</accession>
    <name>A0A0Q8VCF4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04700</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894303.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54779">
        <property type="protein sequence ID" value="KRC54779"/>
        <property type="gene ID" value="ASE19_04700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2005685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="92"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="116"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="120"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="16231" checksum="05B6E8A09FCCAE92" modified="2016-01-20" version="1">MIGHLGTRVSALLDGQLSAKDAEEAWAHVYACHACRDLVEREGWVKTRLAGLCSGEREVPSGLKGSLMSMPPGDALLAGTPATGHAGRRTGAVMLGGSAVGAAILGVVALGFTSGSTPPADRRPPVTQINNSSVPATPTPVSTPSSGGPGQSVPIFRKRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD04</accession>
    <name>A0A0Q8VD04_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peptidase M16</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06305</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894457.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55048">
        <property type="protein sequence ID" value="KRC55048"/>
        <property type="gene ID" value="ASE19_06305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1415414at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024653">
        <property type="entry name" value="Peptidase_M10/M27/M57"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006026">
        <property type="entry name" value="Peptidase_Metallo"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12388">
        <property type="entry name" value="Peptidase_M57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00235">
        <property type="entry name" value="ZnMc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359919" evidence="1">
        <location>
            <begin position="30"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="ZnMc" evidence="2">
        <location>
            <begin position="95"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="273" mass="29200" checksum="B4F757ED90C113A4" modified="2016-01-20" version="1">MLSSRISRISLGVACLAAAFAGATVSASAADGDTAGAPTYKEFEASTYVDVDGAFVVNGDEVVSSKGELKKFYERLVGPESTPVDGLIVNTVGGADDRWSASQVANLTYCVSTKFGTRHDDIVAAMTAGAGLWEAASSKVNFVYVPAQDGKCTTRNNSILFSVEPTSTTQYIARAFFPSTPKRQRNVLVDDSIWTSGNWEPGDILGHELGHTLGFRHEHTRPESGTCFEDNNWRPLTPYDSASIMHYPQCNGSSSDLEFQASDAAGVRALYGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD39</accession>
    <name>A0A0Q8VD39_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06140</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55019">
        <property type="protein sequence ID" value="KRC55019"/>
        <property type="gene ID" value="ASE19_06140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="778524at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="349" mass="38417" checksum="23229518DDB6C583" modified="2016-01-20" version="1">MTAVVGLHLTRTAENGAEIDALAAALAADGGGRVGVDGMVADLTGRLRRTFAPSPRLLGRKVSQAYTWEGHDRRDPTWMPQGITTSAETGFRERHGHDVLATSWYSRKGAGSRISIVDVERRKYGHVLLVTPTVKDGVPGFGPLKVHAGGIVWHGGYLHVGGTGKGLYTCRLEDLMRVPAGSSYETWGHRYVLPVRFVYRGASEEGTSRLRFSFFTIDRSGAEPALVVGEYGSPKQTRRLARFALDPATHLLVGGEDGRFVPEIDERGKARMQGVAVVDGVYYATASRTPVLPGSMFVGTPGDFRELFWATPIGPEDLVHWPETDSFWSVTEHPRRRWVFAMKRSSLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE29</accession>
    <name>A0A0Q8VE29_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10585</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894782.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52849">
        <property type="protein sequence ID" value="KRC52849"/>
        <property type="gene ID" value="ASE19_10585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1771429at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="82"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="203" mass="21108" checksum="09B772FA87CBEC7E" modified="2016-01-20" version="1">MTDPNEPRVDRPVLNGLVALVAVGLGVGLILALVAMVGTKMLGIDGADASAGNGSTVRDSMYLPTPVETVGSSGPLITLHTEDPDDVATEGTDGATEPLESETTEETDTASPKAGEISLQAVDTTVSSGERIYFSGVYPGGEGAILWLQRWQDGSWADFPASVGVTNGTFSSYIFTGVSGLNRFRVIDRDNGTVSNEIRVTVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG02</accession>
    <name>A0A0Q8VG02_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Fe-S cluster protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_10855</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894830.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52898">
        <property type="protein sequence ID" value="KRC52898"/>
        <property type="gene ID" value="ASE19_10855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1951488at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004017">
        <property type="entry name" value="Cys_rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02754">
        <property type="entry name" value="CCG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="69"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="110"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="219"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="306"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="381"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="727"/>
            <end position="1030"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1051"/>
            <end position="1144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="4">
        <location>
            <begin position="981"/>
            <end position="1007"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="1015"/>
            <end position="1030"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="4">
        <location>
            <begin position="1087"/>
            <end position="1103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1144" mass="120446" checksum="BF8F9DA7A84F4B9A" modified="2016-01-20" version="1">MQTIAIVVSLTISVVAIALTARAVAAMLGVIRKGQPAPGRTGNPVGRTVTMLKETFLHTRMLQWTWVGALHWFAFAAFLFLSTAVAAAFPQLFDPEWTIPIIGKWAVYEWTAEILGLLGSLAILPLIYYRLSHQPRKLGRRSRFFGSTQWQAFFVEAMVLLESSAILFIRGAEHNLARAHGVENPESLGHATGAHFPISQYVGNLYPSGHDSIGSLENIIFFIAMFKITSAMIWLIVISTNLTMGVAWHRFTAWFNIWFKREESGRTALGAVKPLTSGGKPITLDDVDDLDEEAVLGAGSIWDFSWKDILDFTTCTECGRCQSQCPAWNTEKPLSPKLMMMAMREEAYAVAGGAEPRALVGKTDREQSDGVLDYFYNPEGGDFVIDEDALWGCTNCGACVQQCPVDIEHVDHFVDMRRYQVLVESNFPSELNGLFKGLENKGNPWNMSATARLDWAKDLPFEVKVVGDQIEDLESVDWLFWVGCAGAYEDRAKKTTRAVAELLDLAGVSFGVLGNGETCTGDSARRAGNEFVFQGLAQQNIETLNDAKAKKVVSTCPHCMNTLKNEYRQLGLELEVIHHTQLLNRLVREGKLTPVATGAGAHARKVTYHDPCFLGRHNQVYTPPRDLLEILPGAEFAEMERNKEKSFCCGAGGARMWMEETIGERINLNRTAEAVGTGADQVAVGCPFCRVMISDGLTKMQADGEAREEVEVLDVAQMLLASVKGEQATKLKPGEGTPLQPKAAAPAAAPAAPTEKQSVETKAEPEAGDVTISDDTVVATEDVGPAAKASGGSSMFDDPGSMFDTPAPAAPAEEKPAAPAGGGSLFDDSSSLFDSAPAAPAEKPAEKSAEKPAEKPAGGGSLFDDGGSLFDTPAPAAPAAPAEEKPAAAPAAAEAKPAADLGAGGSLFDLAPAEEAPAAAPAAEAAEAPKAEAPAPAPAAPAAPEPSVDLNAGGSLFDIATPDAKQAGSEATDAKPVTPEPAAAAPAPAAAPEPAAEPEPEPVTPEPAPVAETSAAAPASSSSTASAPKTDVDINAMGSLFDIAAPEAAAVERPAAAAAPEPVAAPVEEAPAAEPEPVAVEEPVAAPEPEAELEPEPEPEPEAEAEPTAAPAAAAPAQPASYSGEAHQPRTDVDINAAESLFDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGE4</accession>
    <name>A0A0Q8VGE4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14395</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896982.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53521">
        <property type="protein sequence ID" value="KRC53521"/>
        <property type="gene ID" value="ASE19_14395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2107878at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="608"/>
            <end position="626"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="563"/>
            <end position="602"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="632" mass="64631" checksum="186D59A1736CD5B6" modified="2016-01-20" version="1">MSTFIAPSYADDAGTGDAPASSETQAPAADPAPEPKPAPEPAPAPKPAPEPKSADEPEPAPAQPADEPETEQAPAPEEEAAPAPVQEIPADAVPAGDGAEVGAAQIKAGAAQAAAPASNKKVVVCKYVGTPPGKPHHIIVVSKSAIKDWPEGTFPWTFADAQDSVAIRWAVGNEQPGNEELVNCPGFDPGEPAEPVVITPPDVQAVDPCGPANAEYPAIAETEQYSVTVNADKSVTLTAKDGFTFADDAPSHTYPAPVDSGTECPQDEKKVVVCKYVGTPPGVPHHIIVVSKSAALAAGWVEGQFPGVFADAQDSIAIRWAVGNEQPGDEELVNCPLADIEPPVIEPVDPCGPDNIAFPAVEDTDEYTAAVVDGDVVLTANPGYEFPGGEHTFTYELPADSGEACPPAVIEPPVLEPTDPCGPDNAVYPALAETDQFGVTVNGDRSVTLTAKAGYVFANQQATYTYPTPADSNEPCPEVAALVACVYPDAPARLGTGVPAGVITVIDEATALLNGFLGSFPFSYVNGDGEVELIAYLEDGQTVDDFDALEMCGEVAGICDDATDPGAVDENGEPCVPGEPGEPGEPGDGGETGGETDALPNTGGPAGFLLPIGALMVLVGAGLVVVRRPHSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH05</accession>
    <name>A0A0Q8VH05_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Peptidase M48</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_02705</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="7 8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7 8">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the peptidase M48 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892768.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56750">
        <property type="protein sequence ID" value="KRC56750"/>
        <property type="gene ID" value="ASE19_02705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1918093at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071586">
        <property type="term" value="P:CAAX-box protein processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07343">
        <property type="entry name" value="M48A_Zmpste24p_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027057">
        <property type="entry name" value="CAXX_Prtase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001915">
        <property type="entry name" value="Peptidase_M48"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032456">
        <property type="entry name" value="Peptidase_M48_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01435">
        <property type="entry name" value="Peptidase_M48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16491">
        <property type="entry name" value="Peptidase_M48_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1 8" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 7 8" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="67"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="97"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="151"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="175"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="287"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M48_N" evidence="11">
        <location>
            <begin position="42"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M48" evidence="10">
        <location>
            <begin position="207"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="278"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6">
        <location>
            <position position="353"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="281"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="349"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR627057-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR627057-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF16491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC56750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="412" mass="44059" checksum="606A1905B331AAF4" modified="2016-01-20" version="1">MDTRRAARRVALGTVLLGAAAFVLIAAERVPWEIVPGGMPRPASASSVFTSSEIERAEHYARWARTWSWSSLAVSLAVACWLGFGRRGRAWAERVPGWWWVRIVLVVAALSVVGRLVTLPFAIALRRLALDEGLAAGTWSTWGVDVVKGELIAIVTTSLAVIALVACVRRWPRAWPAVAGVLGAALVVVGSFVYPVLIEPVFNHFEPLPDGSLRTAVLDLADQEGVQVDDVLVADASRRTTTLNAYVSGFGHTRRVVLYDTLVDGTPRDEVLSVVAHELAHARHGDVVTGTALGAAGALVGIGLLGLLLAGDGRRDLRRAGTVPCLLALVALATLASAPVQNGISRQLEARADQTALERTRDPQAFVALQRRLALRSHADPTPPVWSQFWFGSHPTVLQRIGLARAGAESAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHB1</accession>
    <name>A0A0Q8VHB1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Globin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05180</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54857">
        <property type="protein sequence ID" value="KRC54857"/>
        <property type="gene ID" value="ASE19_05180"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019825">
        <property type="term" value="F:oxygen binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005344">
        <property type="term" value="F:oxygen carrier activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.490.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009050">
        <property type="entry name" value="Globin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012292">
        <property type="entry name" value="Globin/Proto"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019795">
        <property type="entry name" value="Globin_bac-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001486">
        <property type="entry name" value="Hemoglobin_trunc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01152">
        <property type="entry name" value="Bac_globin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46458">
        <property type="entry name" value="SSF46458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01213">
        <property type="entry name" value="GLOBIN_FAM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0561">Oxygen transport</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="131" mass="15132" checksum="2555C1C0AC416F97" modified="2016-01-20" version="1">MTTPTGDETTFFEEIGGLETFRRIVARFYEGVAQDEVLRPMYPEEDLGPAEERFLLFLVQYWGGPTTYSEQRGHPRLRMRHAPFSVDTDARDRWLGHFRAGLDSVELTPEQDAQFWAYVTHAANFMINTPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHI8</accession>
    <name>A0A0Q8VHI8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 9">Quinolinate synthase</fullName>
            <ecNumber evidence="2 9">2.5.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">nadA</name>
        <name evidence="11" type="ORF">ASE19_02845</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>dihydroxyacetone phosphate + iminosuccinate = H(+) + 2 H2O + phosphate + quinolinate</text>
            <dbReference type="Rhea" id="RHEA:25888"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29959"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
            <dbReference type="EC" id="2.5.1.72"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="9">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 9">Cofactor biosynthesis; NAD(+) biosynthesis; quinolinate from iminoaspartate: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the quinolinate synthase family. Type 3 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.72" evidence="2 9"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892790.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56772">
        <property type="protein sequence ID" value="KRC56772"/>
        <property type="gene ID" value="ASE19_02845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="613347at2"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00327"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008987">
        <property type="term" value="F:quinolinate synthetase A activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10800">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00569">
        <property type="entry name" value="NadA_type3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003473">
        <property type="entry name" value="NadA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036094">
        <property type="entry name" value="NadA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023515">
        <property type="entry name" value="Quinolinate_synth_A_type3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30573">
        <property type="entry name" value="PTHR30573"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02445">
        <property type="entry name" value="NadA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142754">
        <property type="entry name" value="SSF142754"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00550">
        <property type="entry name" value="nadA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 9" id="KW-0408">Iron</keyword>
    <keyword evidence="8 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 9" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Iminoaspartate binding" evidence="9">
        <location>
            <begin position="153"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="region of interest" description="Iminoaspartate binding" evidence="9">
        <location>
            <begin position="273"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>iminosuccinate</name>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>iminosuccinate</name>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>iminosuccinate</name>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="247"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="290"/>
        </location>
        <ligand>
            <name>iminosuccinate</name>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="337"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC56772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="391" mass="42662" checksum="B986F3623B9CED49" modified="2016-01-20" version="1">MTTVDLPLLPLGRGSDPLSERGVECPGDLPPASDPDLVARARAAKEKLGERLFVLGHHYQRDEVIQFADVTGDSFKLARDAAARPDAEFIVFCGVHFMAESADILTGPDQKVVLPDLAAGCSMADMARIAQVERAWDALAEAGVQDVVVPVTYMNSSAAIKAFCGRNGGVVCTSSNAEVALDWAFEQKGEDTKVLFLPDQHLGRNTAVLKLGYSLDECVVWNPHKPNGGLTPEELAQARIILWKGHCSVHGRFAADVIDELRAKVPDLNVLVHPECQHEVVLKSDLVGSTEFIIKTIEEAPAGSSWAIGTELNLVQRLKNAHPDKNIMFLDRNVCYCSTMNRIDLPHLVWALENLAEGNLVNQIEVDPQTEADALVALQRMLDLPGKTHRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHL4</accession>
    <name>A0A0Q8VHL4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)</fullName>
            <ecNumber evidence="4">1.17.7.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ispG</name>
        <name evidence="5" type="ORF">ASE19_03025</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>(2E)-4-hydroxy-3-methylbut-2-enyl diphosphate + 2 H(+) + H2O + oxidized [flavodoxin] = 2-C-methyl-D-erythritol 2,4-cyclic diphosphate + reduced [flavodoxin]</text>
            <dbReference type="Rhea" id="RHEA:43604"/>
            <dbReference type="Rhea" id="RHEA-COMP:10622"/>
            <dbReference type="Rhea" id="RHEA-COMP:10623"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57618"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="ChEBI" id="CHEBI:58483"/>
            <dbReference type="ChEBI" id="CHEBI:128753"/>
            <dbReference type="EC" id="1.17.7.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="4">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 5/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the IspG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.17.7.3" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892823.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56804">
        <property type="protein sequence ID" value="KRC56804"/>
        <property type="gene ID" value="ASE19_03025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="665306at2"/>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00096"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046429">
        <property type="term" value="F:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00159">
        <property type="entry name" value="IspG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016425">
        <property type="entry name" value="IspG_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004588">
        <property type="entry name" value="IspG_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30454">
        <property type="entry name" value="PTHR30454"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04551">
        <property type="entry name" value="GcpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004640">
        <property type="entry name" value="IspG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="SSF51717"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56014">
        <property type="entry name" value="SSF56014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00612">
        <property type="entry name" value="ispG_gcpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 4" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="4">
        <location>
            <position position="281"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="284"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="316"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="323"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="383" mass="40531" checksum="645CA1813647FE26" modified="2016-01-20" version="1">MTSISLGMPAAPPPVLAPRRTTRQIQVGKVGVGSDHPISVQSMTTTLTSDVNTTLQQIAELTAAGCDIVRVACPSQDDADALPEIAQHSQIPVIADIHFQPKYVFAAIEAGCAAVRVNPGNIKKFDDQVKEIARAAQDHGTSIRIGVNAGSLDKRLLEKYGKATPEALVESAVWEASLFEEHGFRDFKISVKHNDPVVMVRAYELLAEQGDWPLHLGVTEAGPAFQGTIKSATAFGALLSKGIGDTIRVSLSAPPVEEVKVGIQILQSLNLRPRKLEIVSCPSCGRAQVDVYTLAERVTAGLDGLEVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIFVKGEVIKTVPEAEIVETLIEEALKLAESMEPVEGAEPSVSVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHS1</accession>
    <name>A0A0Q8VHS1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02855</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892792.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56774">
        <property type="protein sequence ID" value="KRC56774"/>
        <property type="gene ID" value="ASE19_02855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1936227at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021403">
        <property type="entry name" value="DUF3043"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11241">
        <property type="entry name" value="DUF3043"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="94"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="120"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="195" mass="22552" checksum="04621CCCB2ADB4DC" modified="2016-01-20" version="1">MFKRTKSPAVEEQSAPTKPGGKGRPTPTRKEAEAAAKARARVPRDKRELQRQQRELRSESSRKIRQGMKAGDEKYFLPRDKGRVRRFIRDYVDARFSIVEMVIPLMIAGLVLGYTGQSALVQASSIVLLATVLFVITDMFVLRFRLRRELRRRFPDESLKGTTYYALTRSMQMKFMRLPKARVKIGQALPEDYDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHV3</accession>
    <name>A0A0Q8VHV3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Xaa-Pro aminopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_05245</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the peptidase M24B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54867">
        <property type="protein sequence ID" value="KRC54867"/>
        <property type="gene ID" value="ASE19_05245"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007865">
        <property type="entry name" value="Aminopep_P_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029149">
        <property type="entry name" value="Creatin/AminoP/Spt16_NTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001131">
        <property type="entry name" value="Peptidase_M24B_aminopep-P_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05195">
        <property type="entry name" value="AMP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01011">
        <property type="entry name" value="AMP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53092">
        <property type="entry name" value="SSF53092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00491">
        <property type="entry name" value="PROLINE_PEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0464">Manganese</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP_N" evidence="7">
        <location>
            <begin position="49"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM01011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC54867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="478" mass="52330" checksum="C73DC3A6A0E7283C" modified="2016-01-20" version="1">MTEDTPQSTPTAPAAQLKTEQHDPAVPEAYAAFMRTGWDDRPSHVERHPLADRAADRRRRLAEAFPGERLVLPGGGYKVRAYDTDYRFRPDTAHTYFSGNQTSDAVLVVEPDGSSVLYARPRSGRESDEFFRDRQYGALWAGKRPSSEELEAALGIEVRHVDDLAAALAGGTKTRVHRSVSASVDGLVTADEARDAELARVLSEMRLVKDDWEVAQLQSAIDATTLGFEDCVREWDRVIEHGERWLEGTFFRRARTMGNDIGYDSIVANGAHATTLHWIENSGAVTPGELILLDMGVENAHLYTADITRTLPVSGTFTSLQRDLYTLVLQAQDAALAALRPGAKFLAGHEAAMVVLAHGLGDLGLLPVSVDEALSPDSKVYARWTLHGVSHMLGMDVHDCGHAAPEAYRDADLVEGMVLTVEPGLYFQADDLLVPEELRGVGIRIEDDVLVTADGVQNLSAALPRTPDAIEEWMASLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHW5</accession>
    <name>A0A0Q8VHW5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RNA polymerase subunit sigma-70</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_10255</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894724.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52791">
        <property type="protein sequence ID" value="KRC52791"/>
        <property type="gene ID" value="ASE19_10255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="108"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="7">
        <location>
            <begin position="206"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="57"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="267" mass="29501" checksum="97CC80AAEBAC86EA" modified="2016-01-20" version="1">MTWERSDVARGLEALRAAVAAALTLEPSPAYAFAGAAASSRPARRTDSWLLSEAHVESEDSFDRGPGSTSYGDATLATSSEDSPEERERLIGLVELARGGDAEAFGMLYDHYQPSVYRFLYYRTRSVVVAEDLCSETFFRALRNMPSFRWQGKDFGAWLMTIARNLATDHFKAGRTRLELTTEDMGQHDDSTEGPENAVLASLTNEILLEALTQLPNEQRDCLIMRFLQGMSIAETAAALGRSDGAIKQLQLRGVRNLAKLMPEGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHX4</accession>
    <name>A0A0Q8VHX4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14225</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897013.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53490">
        <property type="protein sequence ID" value="KRC53490"/>
        <property type="gene ID" value="ASE19_14225"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="103" mass="10815" checksum="10C4BEDB753C74C4" modified="2016-01-20" version="1">MGLNPVADVLKRADKVLKSAEVALTNVDTTLGTVEGTLTTVEGTLTSVDGKLTTVDTTLAETREVLGQVQTLLGDLNDKLVLLDEVPDLKAKLDKVLAAVEKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHX9</accession>
    <name>A0A0Q8VHX9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05355</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894198.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54883">
        <property type="protein sequence ID" value="KRC54883"/>
        <property type="gene ID" value="ASE19_05355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1239251at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020556">
        <property type="entry name" value="Amidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00571">
        <property type="entry name" value="AMIDASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidase" evidence="1">
        <location>
            <begin position="25"/>
            <end position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="474" mass="49138" checksum="39E6749D9A89B11B" modified="2016-01-20" version="1">MAELHDLTALEQGELVRSGETSPVELTEHYLERAARLPREYVDGAFAFLDPDAARRRAREVAAVGPVGDGASPLAGVPTAIKDLNLTRGVPTEFGSPAFAGYVPEVSDGVTLAIEEAGMVSLGKSSTPEFGSPCYTEPEGRPPAVTPWDVTRMAGGSSGGAAAAVAAGLVPVAQGSDGGGSIRIPAACCGLVGLKPTRGRISGFPMYGDPVGLATSGSMARTVADAAALLDVLAGRRAGDPSWAPAPSGPFLAAARRDPGRLRIACFDTPVIADVAVDPEVLAAYEATTRLLSSLGHVVEDVPVPIPPEAVPVFETCWAVLTAMSTVPLSDAQAQLVRPLTRWLGERGAAVSGPEFGLAIGQLRRFAGEALVALAPYDIVLTPTLATVPLPVGAIRDDADPAADFEAQKRFTPWTSAWNVTGMPAISLPLHHSAAGLPIGMMLAARPAEEELLLSLAAQVEAALPWKDRRPPLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHZ8</accession>
    <name>A0A0Q8VHZ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892674.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57020">
        <property type="protein sequence ID" value="KRC57020"/>
        <property type="gene ID" value="ASE19_02175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1911879at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021215">
        <property type="entry name" value="DUF2752"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10825">
        <property type="entry name" value="DUF2752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="127" mass="13294" checksum="9D99202EAD07E86E" modified="2016-01-20" version="1">MVPPALVAGGLAAATLALHLRDPHDQGSWGLCPTAALGFACPGCGGLRAVNDLGNLQLGAAASSNLLFVLSLPFIAYAFWRWAHGRWTGRPWDPSDRTLRYAAITLGAAMVAFTVARNLPAGSWLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI71</accession>
    <name>A0A0Q8VI71_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08525</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895525.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54093">
        <property type="protein sequence ID" value="KRC54093"/>
        <property type="gene ID" value="ASE19_08525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1641547at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="184"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="216"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="255" mass="28434" checksum="E45EE4997F14E152" modified="2016-01-20" version="1">MLTTQPRTNVDRDLVHGDYVTLRVSLLLVGSYCLFGLLGFAVFAGFWPPPGEDWSAQEIHAYFVEHQTGLTLGMVMMAFAGPFYVTWSVAISKVIGRIEGPMGPLAGIQVIGGLLTGLVTFTPATIWITAAFRVEDRSPEMVQTLYDFGWMFFDTTFVCSALQSVALGVAILRDRRTQGLYPRWFAYLSFFTAFCYVPLTVMPFVEKGLFAWHGGISFWVVFVEFFAFTALGTWFTWHALRRLEVEDLAVAGAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIA3</accession>
    <name>A0A0Q8VIA3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heme oxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_05920</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894095.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54979">
        <property type="protein sequence ID" value="KRC54979"/>
        <property type="gene ID" value="ASE19_05920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1371367at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004392">
        <property type="term" value="F:heme oxygenase (decyclizing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006788">
        <property type="term" value="P:heme oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd19165">
        <property type="entry name" value="HemeO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002051">
        <property type="entry name" value="Haem_Oase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016053">
        <property type="entry name" value="Haem_Oase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016084">
        <property type="entry name" value="Haem_Oase-like_multi-hlx"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10720">
        <property type="entry name" value="PTHR10720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01126">
        <property type="entry name" value="Heme_oxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000343">
        <property type="entry name" value="Haem_Oase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00088">
        <property type="entry name" value="HAEMOXYGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48613">
        <property type="entry name" value="SSF48613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0349">Heme</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="2">
        <location>
            <position position="26"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000343-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000343-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="224" mass="24212" checksum="1B25050449D43FD9" modified="2016-01-20" version="1">MSVATTTRDAAPTLSAAMREGSRAEHEAAEGSTFMAELLDGRLNATAYADLLLRLRRVYAALETTLTEQSADPLVAAVHDAALERLAAIDADLAHWAPGIDPETIDSPAAAAYVDRIRAGATWGGLLLAHHYTRYLGDLSGGQVIGRVLQRTFDLPEGEGVAFYDFPGIPKPKPYKDAYRARLDALGLSEADVERVVDEVKVVFGLNQGLFDELGDQIERYRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIN1</accession>
    <name>A0A0Q8VIN1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11520</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894945.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53015">
        <property type="protein sequence ID" value="KRC53015"/>
        <property type="gene ID" value="ASE19_11520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1721089at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029046">
        <property type="entry name" value="LolA/LolB/LppX"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89392">
        <property type="entry name" value="SSF89392"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360077" evidence="2">
        <location>
            <begin position="28"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="242" mass="25508" checksum="80F6465780E476B8" modified="2016-01-20" version="1">MRSALSILAVPVLALGLSACGDDDKKASDSSKDDAKSYSDSSIDTIADDVDKAMKGLEAVHLSGNVDDDGRTILMDVTVSKGDCEGHLEIKGQGSMDIISVDGASYFKADDAFWKSQAGEQASMITGMIGDKWATDSTDDEGFAELCDLDKLLSDMDSGDVTDDNSKVTGTEKVNGVDTVSVSFTSDDGNPGTAYVAATDPHYFVRIDVPKEGSMTFSDFDKPLDVQKPADDEVVDLGTLGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIT0</accession>
    <name>A0A0Q8VIT0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nitroreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54225">
        <property type="protein sequence ID" value="KRC54225"/>
        <property type="gene ID" value="ASE19_08765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1847197at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="1">
        <location>
            <begin position="14"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="24150" checksum="A122A87BAD1C0BFC" modified="2016-01-20" version="1">MTSDAADALEQVLASRYSCRGFLPDPVAPETLRRMFTMAQRTASWCNSQAWQVHLLSGADTLALSERLVARVPAGPEQPDIPGPERYEGAYQDRRRACGGALYTAVGVARDDMEGRVLQMLENFRFFGAPHVAVVTSPKALGTYGVMDCGGYVANLLNAAEALGVNAIAQAAIAMYADVVRDQLAIPEDRSIVCAVSLGHADPSHPANTFRTEREDVDIAVTGLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIT7</accession>
    <name>A0A0Q8VIT7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08730</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895656.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54224">
        <property type="protein sequence ID" value="KRC54224"/>
        <property type="gene ID" value="ASE19_08730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="27365" checksum="DA3FDF528C8ADFBF" modified="2016-01-20" version="1">MAPVRLQVADGVATITLDRPDAMNAVTTALAVALEQALRSAGADPAVRVVLIRGAGGNFCAGGDFEEVQRLRAEGPDALRTLFRSFRDACAAVGEISQPVVAAVEGVAMAGGFELMQACDVVLVRHDARISDNHVNFGMVPGGGGSQRLPRIVGHQRALGLLLSGDRITGVDAVEWGLAYRSYAADSFDRDVEEFVARIASRRPDAVQGIKRLVHEGLGGDLDTGLDLEIDVVVAHIAGDAGGASVSSFAGRKQDTKEHTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIY6</accession>
    <name>A0A0Q8VIY6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">N-hydroxyarylamine O-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23745</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the arylamine N-acetyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893982.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57348">
        <property type="protein sequence ID" value="KRC57348"/>
        <property type="gene ID" value="ASE19_23745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687886at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016407">
        <property type="term" value="F:acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001447">
        <property type="entry name" value="Arylamine_N-AcTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11786">
        <property type="entry name" value="PTHR11786"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00797">
        <property type="entry name" value="Acetyltransf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01543">
        <property type="entry name" value="ANATRNSFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="275" mass="30479" checksum="36D3F5759848BB7A" modified="2016-01-20" version="1">MTDGWQTDRLDLDGYLARLGLTAAGATPDRATLDALHEAHVRTFTFDNVDVLLDQHPGVGMDALNAKFVDRGRGGYCFEHASVFAAALERIGYDVRRHLGRVGDPAAGTVQGRTHMTVEVMLDGERLLCDPGFGMSLVHPIPLADGAESDQRGWPYRMVRADDGTWGLHRLREAGWELTHTTDELPVRPVDVVIGHHYTSTFPTSHFRSGLMVTKHEDGRHVAVTGTTVTVRRPGEPTEHRELADGELVEWLRVLDVPLIDDEERRLLARLADLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK14</accession>
    <name>A0A0Q8VK14_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14085</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53463">
        <property type="protein sequence ID" value="KRC53463"/>
        <property type="gene ID" value="ASE19_14085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2072853at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="82" mass="9520" checksum="3FD1327CEE8A30A4" modified="2016-01-20" version="1">MVAMTREHRQLGDRTRAFPVRQLVAYRRLIVNGERTDPERVVADYIRAHPEVDLEERATFAEWHAGVLPGDTSQRLRGLPIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKF0</accession>
    <name>A0A0Q8VKF0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_04355</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894361.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54720">
        <property type="protein sequence ID" value="KRC54720"/>
        <property type="gene ID" value="ASE19_04355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="551294at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="11"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="266"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="43"/>
            <end position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="513" mass="54682" checksum="24871C892457519C" modified="2016-01-20" version="1">MITGGAQDVVLCTTGLSKTFAGTTVLQDAHLEVKRGEIHALLGGNGSGKSTLIKVLAGVYGADSGGRIAVQGVSAPADEWSPAMARNAGLHFVHQDPAVFGPLTVAENLAIGRGFIQAVGGRINWPANRRRAAKILERFSIDVSPEALVANLRPAERTMLSIARALQDQEGAHDGVLVLDEPTASLPAWEVDILLAALRKYAAAGQTILYVSHRLPEILELADRVTVLRDGIQVATRDIAELDERSLVELIAGRDLERVFPDRPATVSEEIALSVRGLVAGPLRGVDLDLRRGEVLGVAGLLGSGRTTLLRALFGDINIESGQLTLEGAPFRPRRPASAMRAGVAMVPEDRGAEGLFGSLSVRENLSAAVVPRYWSLGRLQHGRERSDASALVGAYAVRPASDAAVAGTLSGGNQQKVVMARWLRRDPVVLLLDEPTQGVDVQARSEIYEHVRRAVAKGSSVLLVTSDFEELAHLSDRVVVLRDGRVAAEARGGDLDPQRLTELSYISEETSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKJ6</accession>
    <name>A0A0Q8VKJ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23595</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893949.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57743">
        <property type="protein sequence ID" value="KRC57743"/>
        <property type="gene ID" value="ASE19_23595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1949591at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046036">
        <property type="entry name" value="DUF5994"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19457">
        <property type="entry name" value="DUF5994"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="125" mass="13898" checksum="5323EBA71E565787" modified="2016-01-20" version="1">MSVREFPYPHRHPQPLGALRLELADEFTEGRLGGRWTPYCRDLTREAAHLIDAFPADRGKIDRLVYAERDWDALETNEVFTRHGRIKVGLLPPSRGTGLVLVRVTGAGIVALGIAWPTGLASRQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKY5</accession>
    <name>A0A0Q8VKY5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">8-amino-7-oxononanoate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_05345</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894200.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54881">
        <property type="protein sequence ID" value="KRC54881"/>
        <property type="gene ID" value="ASE19_05345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="479874at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001917">
        <property type="entry name" value="Aminotrans_II_pyridoxalP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00599">
        <property type="entry name" value="AA_TRANSFER_CLASS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="4">
        <location>
            <begin position="34"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="16"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="16"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="375" mass="38843" checksum="079FFE9948D77740" modified="2016-01-20" version="1">MSAWQDWLADEASKREEAGLTRRLRERPADDPTTDLAGNDYLGLARDPAVRQAAADAALQWGSGASASRLVSGTFALHGELENELADYLEQPSALVFSTGYHANLAIVTALADRTVRVLSDAHIHASLVDAVRLSRAALTVVPHSDVDAVHAGLVAAHDAGERAMVLVESVYSVLGDAAPLVELAALCEEYDALLVVDEAHGVGVHGPGLVTTLGLAGLPHVVVTATLSKSLGSQGGAVLGPTALREHLVNRARPFIFDTGLAPAPTAGALAALREIRRRPELGATVRSRVAALADVLGVVAPAGAVLSVPMSSPQAAVAAQAAALEAGLRVGCFRPPSVPDGISRLRITVTAGVPADDWARAVDTLVELVKEHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL03</accession>
    <name>A0A0Q8VL03_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytidine deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05425</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894184.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54897">
        <property type="protein sequence ID" value="KRC54897"/>
        <property type="gene ID" value="ASE19_05425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1948290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="189" mass="20506" checksum="4A67BD6884109A7C" modified="2016-01-20" version="1">MSAPPDLPDVVTRAFDVSRRAGYVSFCRNETGRLLAMLAATREGTMAEFGTGCGVGTAWLRSGVRNDKARILTAELQPRLAAAATEIFVDDPLVDVLEADWSTLMDKGPFSLLFLDSGDPSAVRVDKLADLVEPGGIVVLDDFVPCEMWPPITGGRVDTLREEWLTDERFTTVEVMVASDASAIVATRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLZ3</accession>
    <name>A0A0Q8VLZ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Mechanosensitive ion channel protein MscS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_05175</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MscS (TC 1.A.23) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55136">
        <property type="protein sequence ID" value="KRC55136"/>
        <property type="gene ID" value="ASE19_05175"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008381">
        <property type="term" value="F:mechanosensitive ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006685">
        <property type="entry name" value="MscS_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011066">
        <property type="entry name" value="MscS_channel_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011014">
        <property type="entry name" value="MscS_channel_TM-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023408">
        <property type="entry name" value="MscS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045276">
        <property type="entry name" value="YbiO_bact"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30460">
        <property type="entry name" value="PTHR30460"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00924">
        <property type="entry name" value="MS_channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="SSF50182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82689">
        <property type="entry name" value="SSF82689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82861">
        <property type="entry name" value="SSF82861"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="79"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="105"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC55136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="312" mass="34296" checksum="932FAEDEB3EA8BF8" modified="2016-01-20" version="1">MCELTWDVSGNRRLAEWSDVLIGKPLAVIGLVLLGLVARWLLHRVVDRIAHRAEHGVLPERVESAVAARRKQRAATMAGLLKSIITFVLFAVIGTMVLSEIGVDIAPIIASAGIIGIALGFGAQSLVKDFLAGIFVFIEDQYGVGDVVDVGEANGTVEAVTLRMTRLRDINGTVWYVPNGEIVRVGNKSQNWSRAVVDVGVGYGEDLARVQRVLREVAHDLWEDEEFNGLIIEEPEVTGVEMLAPDSVTIRVMVKTAPLEQWAVARALRQRIKARFDHEGIEIPFQQRVVWHREDKRAHDAPPPPAATGDEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMH0</accession>
    <name>A0A0Q8VMH0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase</fullName>
            <ecNumber evidence="10">2.4.1.227</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">murG</name>
        <name evidence="13" type="ORF">ASE19_02365</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc-(pentapeptide)GlcNAc (lipid intermediate II).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + UDP-N-acetyl-alpha-D-glucosamine = di-trans-octa-cis-undecaprenyl diphospho-[N-acetyl-alpha-D-glucosaminyl-(1-&gt;4)]-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + H(+) + UDP</text>
            <dbReference type="Rhea" id="RHEA:31227"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:61387"/>
            <dbReference type="ChEBI" id="CHEBI:61388"/>
            <dbReference type="EC" id="2.4.1.227"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="10">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Peripheral membrane protein</topology>
            <orientation evidence="10">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the glycosyltransferase 28 family. MurG subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.227" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892709.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56691">
        <property type="protein sequence ID" value="KRC56691"/>
        <property type="gene ID" value="ASE19_02365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1165736at2"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051991">
        <property type="term" value="F:UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050511">
        <property type="term" value="F:undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030259">
        <property type="term" value="P:lipid glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00033">
        <property type="entry name" value="MurG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006009">
        <property type="entry name" value="GlcNAc_MurG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007235">
        <property type="entry name" value="Glyco_trans_28_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004276">
        <property type="entry name" value="GlycoTrans_28_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04101">
        <property type="entry name" value="Glyco_tran_28_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03033">
        <property type="entry name" value="Glyco_transf_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01133">
        <property type="entry name" value="murG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2 10" id="KW-0132">Cell division</keyword>
    <keyword evidence="1 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 10" id="KW-0133">Cell shape</keyword>
    <keyword evidence="9 10" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="3 10" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 10" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10 13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_transf_28" evidence="11">
        <location>
            <begin position="3"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_tran_28_C" evidence="12">
        <location>
            <begin position="188"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="region of interest" description="UDP-N-acetyl-alpha-D-glucosamine binding" evidence="10">
        <location>
            <begin position="10"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="293"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF03033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF04101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC56691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="364" mass="37667" checksum="E5E11DC0EB117975" modified="2016-01-20" version="1">MRVLLAGGGTAGHTSPLLATADALRRLEPDVEITCLGTPRGLENKVVPEAGYPLRLVPPVPLPRKPGKDLALVPKRLRAAVKAALEVIDEVRPDVVVGYGGYVSMPAYVAARRRKLPLVVHEQNALPGIANKFGARVATRVAVSFPDTPLRKAEYVGLPIRRMISTLDRAALRDEARAFFGLDPQLPTLVVTGGSQGARRLNQAVSGAAAALGSGGVQVLHVIGPNGASDPSWTAPVPTGVPYVVLPFVERMDLALAAADLMVCRAGASSVVEASSSGVPAIFVPLPIGNGEQALNARPVVEAGGALLVEDAAFSADYVADTVPALATDPARLAAMGSAAAGLVPRDADDKLARIIRDVAGTTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VML0</accession>
    <name>A0A0Q8VML0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Transcription termination factor Rho</fullName>
            <ecNumber evidence="4">3.6.4.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">ATP-dependent helicase Rho</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rho</name>
        <name evidence="8" type="ORF">ASE19_03265</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homohexamer. The homohexamer assembles into an open ring structure.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 5">Belongs to the Rho family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.-" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892858.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56841">
        <property type="protein sequence ID" value="KRC56841"/>
        <property type="gene ID" value="ASE19_03265"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008186">
        <property type="term" value="F:ATP-dependent activity, acting on RNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01884">
        <property type="entry name" value="Rho"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011112">
        <property type="entry name" value="Rho_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011113">
        <property type="entry name" value="Rho_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004665">
        <property type="entry name" value="Term_rho"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46425">
        <property type="entry name" value="PTHR46425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07498">
        <property type="entry name" value="Rho_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07497">
        <property type="entry name" value="Rho_RNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00959">
        <property type="entry name" value="Rho_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00767">
        <property type="entry name" value="rho"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51856">
        <property type="entry name" value="RHO_RNA_BD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="4" id="KW-0806">Transcription termination</keyword>
    <feature type="domain" description="Rho RNA-BD" evidence="7">
        <location>
            <begin position="260"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="62"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="77"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="151"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="242"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="378"/>
            <end position="383"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="421"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC56841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="627" mass="67438" checksum="C60B67710633B0CB" modified="2016-01-20" version="1">MTDTLDSTTAAADQASAKAPRKRAGGLNSMLLADLKAMANGMGIPGAGSMKKAALVDAIKASQAGGGSGGGASARAEKSEPKAEQKSEPKAEQKSEPKADKPADEPRAEKPAARSEPKNEPKADEPKAEPQDKQQDKQQDKKDQQDKKDQPQQNRQGNQQNPKQRQGNQQGNQQGNQGGQKQGNQANQQKGPQNQNAQGGQNQNPPKQDESRHADDDGDDDGEGGEGGSRRNRRRRGRDRERTARTGREPDTEVREDDVLVPAAGILDVLDNYAFVRTSGYLAGVDDVYLSLSMVRKYGLRRGDAIVGQVRQPREGERREKFNPMVRIETVNGVDPEQAKVRVEFEKLTPVSPTERLRLETGSDAVVGRVIDLVAPVGKGQRGLILAPSDAGKTATVQAIANAITANNPECHLMVVLIDERPEEVTDFQRAVKGEVVASTFDRPATDHTTLAELAIERAKRLVELGHDVVVLIDGLTRLGRAYNLTAPASGRILPGGVDAAALYPPKKLFGAARNIDNGGSLTILATGLDDGSKMDEAVLEELAGTDNLRLQLSRELADRGLEPAVDIAASGTRREDQLLTPEELTVLGSLRTELAGKDAATALEQLLGMVRNSATNYELLVKLERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMP8</accession>
    <name>A0A0Q8VMP8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Homocysteine methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_03020</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892822.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56803">
        <property type="protein sequence ID" value="KRC56803"/>
        <property type="gene ID" value="ASE19_03020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1149455at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003726">
        <property type="entry name" value="HCY_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036589">
        <property type="entry name" value="HCY_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02574">
        <property type="entry name" value="S-methyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82282">
        <property type="entry name" value="SSF82282"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50970">
        <property type="entry name" value="HCY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 3 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 5" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Hcy-binding" evidence="4">
        <location>
            <begin position="1"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="214"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="282"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="283"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="298" mass="30919" checksum="8567F2DB3B1CB19A" modified="2016-01-20" version="1">MPARHVTDGGLETDLIFLRGIDLPAFASFPLLDSEDGRAVLRDYYLAYADIAARAGAPLLLETPTWRANADHAAALGYDAAALDRVNRQAVEVLAGIAAERADDLVGWEVGGMLGPRGDGYASAGPVDPDAAAEYHHPQLASFAAAGVSRATVLTLTEVGEAIGVSRAAADVGLRAGIGFTVETDGRLPDGTSLADAVRAVDEAAPPAYFLINCAHPSHVLQDFGDGAWRERIGGLRVNASTMSHAELDESETLDDGDPAQLAADQAPIVDALPNLEVLGGCCGTDARHVAAMWGLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN72</accession>
    <name>A0A0Q8VN72_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892534.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58952">
        <property type="protein sequence ID" value="KRC58952"/>
        <property type="gene ID" value="ASE19_23125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1664438at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="18"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="249" mass="27761" checksum="DE458D4A545BD842" modified="2016-01-20" version="1">MLTVDFDRLGLRAGDRVLDMGAGAGRHSFEMYRRGADVIAFDLDADELEGVRDLFVAMKEAGEVPEGAEADVKQGDALALPFADGEFDRIVCSEVLEHIHDDVAAIRELIRVLRPGGTLAVTVPRWLPEVINWRLSADYHNAEGGHIRIYTDHELVDKVTKGGRFNDGTPGEAMVFEGKSYTHGLHAPYWWIKCAVGVENDNHPLAKAYHKLLVWEIMKQPRALQLAGKVLDPMIGKSMVLYFRKPESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNF6</accession>
    <name>A0A0Q8VNF6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SnoaL-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893092.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57059">
        <property type="protein sequence ID" value="KRC57059"/>
        <property type="gene ID" value="ASE19_03700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1644255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12680">
        <property type="entry name" value="SnoaL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="113" mass="12196" checksum="2DB70DB5AF6F8EC9" modified="2016-01-20" version="1">MKACLAPDVVFRSPVAHKPYPGKAITGAILANVVEVFEDFRYVRELGDAEGHALVFEAKVDGLEITGCDFLVLDEDGLITDFMVMVRPLRAAQALAEAMGARFDAIVEQASLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPB3</accession>
    <name>A0A0Q8VPB3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23960</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894013.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57379">
        <property type="protein sequence ID" value="KRC57379"/>
        <property type="gene ID" value="ASE19_23960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2100774at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021202">
        <property type="entry name" value="Rv3654c-like"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03816">
        <property type="entry name" value="tadE_like_DECH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360230" evidence="1">
        <location>
            <begin position="44"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="116" mass="11236" checksum="95272D8DF256081E" modified="2016-01-20" version="1">MSGRPSRGAATVLVVALAGLLLLVGAAAAVVGAIVVAHRTAQAAADLSALAGAATLAEHSGRDPCATAAEVAAANGGAVTSCRVEGQDVLVEVTVPGPRWLGQDHDLHAAARAGQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ35</accession>
    <name>A0A0Q8VQ35_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00855</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896736.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59605">
        <property type="protein sequence ID" value="KRC59605"/>
        <property type="gene ID" value="ASE19_00855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2174225at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="15"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="40"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="122"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="149"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="181"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="245" mass="24746" checksum="5537A4D6250533BC" modified="2016-01-20" version="1">MAEGIEQEEQRGTGIDWPATFAGAGAAVTVALLLSTLGAAGTLIGAALGSVVATVSTALYKQGIESSRRRVAEVQAAALQREAARGHRHVEATEVEGVGDDAAPDPVAAPGNRWAALPWRRLALLAAVVFVIALVAISLIELLAGKSVSSITGGTDGKDRTSIGGVLGGDTDDSDKPRRTPTTDTATPTPTESVSPTEPTTAPTSEATPTESGTPTGTPSVTDTATPTEEQTATETPGPSDNVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQB1</accession>
    <name>A0A0Q8VQB1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00980</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896713.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59628">
        <property type="protein sequence ID" value="KRC59628"/>
        <property type="gene ID" value="ASE19_00980"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="91" mass="9777" checksum="E17F455F68EAEAD1" modified="2016-01-20" version="1">MAADEVREGLQLVANGLEGLEQGRPLTDEQRWLLLKAIKGLQDADRAMRVKLSQMGATIPPLGSSVRAAAREHVVAGLESKSTSPETLARD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQE8</accession>
    <name>A0A0Q8VQE8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HATPase_c domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01885</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56609">
        <property type="protein sequence ID" value="KRC56609"/>
        <property type="gene ID" value="ASE19_01885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1832160at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13581">
        <property type="entry name" value="HATPase_c_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HATPase_c" evidence="1">
        <location>
            <begin position="14"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="137" mass="14273" checksum="FCC9D8682967ED46" modified="2016-01-20" version="1">MVTMTEPFRSFTVPLEPTAVGEARHRLRDVLGRAAVPPAVIEDAALVLSELVTNAIRHARPTPAQEAVVEVSLAGAALHLAVTDGGGAQVPVPVSAPLADPGGRGLALVDLLTDRWWWENTAGGRTVHAVLGLPAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQS4</accession>
    <name>A0A0Q8VQS4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01695</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896581.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59758">
        <property type="protein sequence ID" value="KRC59758"/>
        <property type="gene ID" value="ASE19_01695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1933019at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="164" mass="17514" checksum="F5DD87AD979DE7F6" modified="2016-01-20" version="1">MNLAGKKPGSSVALLLVLTVLAGAGLVWQGVVWRDHRGDDHARNAAVEVATDQVLDLTTLDTDTIDAKVAAMGKRLSGDFKRQFDGFSQTFADVVANDKIRASGKLKSVAVSAYDGRKADVLVATTVDVTTGKATKPTQRDYRMKVSLEGSGDDWLITGMEFVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQX4</accession>
    <name>A0A0Q8VQX4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">MerR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_03305</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892866.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56849">
        <property type="protein sequence ID" value="KRC56849"/>
        <property type="gene ID" value="ASE19_03305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1677723at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01110">
        <property type="entry name" value="HTH_SoxR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010211">
        <property type="entry name" value="Redox-sen_tscrpt-act_SoxR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015358">
        <property type="entry name" value="Tscrpt_reg_MerR_DNA-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30204:SF0">
        <property type="entry name" value="PTHR30204:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00376">
        <property type="entry name" value="MerR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09278">
        <property type="entry name" value="MerR-DNA-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01950">
        <property type="entry name" value="SoxR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00552">
        <property type="entry name" value="HTH_MERR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH merR-type" evidence="7">
        <location>
            <begin position="12"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC56849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="153" mass="17133" checksum="8C1E2546CB2D1BF5" modified="2016-01-20" version="1">MSDVNREIRSHDLTPGEVARRAGVAVSALHFYEREGLITSIRTTGNQRRYHRDVLRRVAFVRVSQGVGISLADIRAALATLPEGRTPTKADWARLSRSWRTTLDERIERLERLRDTLDDCIGCGCLSMQSCRLANPGDALSEYGDGPIRLLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQZ9</accession>
    <name>A0A0Q8VQZ9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Diacylglycerol O-acyltransferase</fullName>
            <ecNumber evidence="5">2.3.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_01815</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 1,2-diacyl-sn-glycerol + an acyl-CoA = a triacyl-sn-glycerol + CoA</text>
            <dbReference type="Rhea" id="RHEA:10868"/>
            <dbReference type="ChEBI" id="CHEBI:17815"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="ChEBI" id="CHEBI:64615"/>
            <dbReference type="EC" id="2.3.1.20"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Glycerolipid metabolism; triacylglycerol biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the long-chain O-acyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.20" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896559.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59780">
        <property type="protein sequence ID" value="KRC59780"/>
        <property type="gene ID" value="ASE19_01815"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER01006"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00282"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004144">
        <property type="term" value="F:diacylglycerol O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019432">
        <property type="term" value="P:triglyceride biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045034">
        <property type="entry name" value="O-acyltransferase_WSD1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009721">
        <property type="entry name" value="O-acyltransferase_WSD1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004255">
        <property type="entry name" value="O-acyltransferase_WSD1_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31650">
        <property type="entry name" value="PTHR31650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03007">
        <property type="entry name" value="WES_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06974">
        <property type="entry name" value="WS_DGAT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-0319">Glycerol metabolism</keyword>
    <keyword evidence="6" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="WES_acyltransf" evidence="11">
        <location>
            <begin position="23"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="domain" description="WS_DGAT_C" evidence="12">
        <location>
            <begin position="328"/>
            <end position="467"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF03007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF06974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC59780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="473" mass="51284" checksum="DA3761A3F18FCC0C" modified="2016-01-20" version="1">MALSDEEIARGRAELAHWGEPELNPLDALMWRTERPPADSWTGVVVIVLGETPTWERIKAAHRWGIRLAPRFAEKVVEPLVPTGPPMWTTDENFDLDYHLRRVRLPGEGTMAELLEYAQAMAVTPLDRTRPPWAAVFVEGLEGGRAAYLLQAHHVLMDGAAATQLFSRILDREPDQVYDVAPGTIERPQVSRKDATGHGLRWQAGAVGKVLRGGAKAVGQVAADPVGVVRGAGSYLSSVPRVTTPPPRAESELLQPGPRTKWRFGSLECDLGDLKRAAKSANGTVNDAFVSAILGGLRVYHDRHGTTLGDVPISMPVSMRRDDDPMGGNRFTGAFFSAPSGLADPADRIRAMHERVLKVREEPALDIMNKVTPLMNLAPSPLVAAAISGLNAGATLTTSSWQGVPFRTYWAGVPFERMFVFGPLPGTSMCAALCTHEGICCIGVNVDGDVFPDTDVLWECLQEGLDQVLALGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR55</accession>
    <name>A0A0Q8VR55_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03675</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892930.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56913">
        <property type="protein sequence ID" value="KRC56913"/>
        <property type="gene ID" value="ASE19_03675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013107">
        <property type="entry name" value="Acyl-CoA_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08028">
        <property type="entry name" value="Acyl-CoA_dh_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="1">
        <location>
            <begin position="20"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_2" evidence="2">
        <location>
            <begin position="243"/>
            <end position="356"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="374" mass="39416" checksum="43974A7A71E10ABC" modified="2016-01-20" version="1">MTTITTHPAPLARAAEIGPRIAAHAARHDAEGSFVSEAYDELRAAGLLRAAVPVELGGDGASVAELTALQRELGHHCGSTALASAMHQHVVAFTAWRYRRGLPGAEATLRRVAEEQILLVSTGGGDYTHPHGEAVRVDGGYRVTGRKRFASQSSQGAVMSTMFCLDDPEQGRRVLNMAIPVGAEGVTVADNWNTLGMRGTASNDIDLVDVFVPDDKVLANRPWGVLDPPLQVISSIAFPIVTGAYLGIAEAAYDAAVAAASRRASDPTVQRQVGVMRSRLQVATWALDGALALVGDDPSPSYATVLAVMAAKAEVGRAGLEVCDLAMEVAGGPAFFRGSVIERCYRDIRAVKFHPFTPEDTLLALGRDALGVGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR78</accession>
    <name>A0A0Q8VR78_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein-glutamate O-methyltransferase</fullName>
            <ecNumber evidence="2">2.1.1.80</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_01375</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-glutamyl-[protein] + S-adenosyl-L-methionine = [protein]-L-glutamate 5-O-methyl ester + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:24452"/>
            <dbReference type="Rhea" id="RHEA-COMP:10208"/>
            <dbReference type="Rhea" id="RHEA-COMP:10311"/>
            <dbReference type="ChEBI" id="CHEBI:29973"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:82795"/>
            <dbReference type="EC" id="2.1.1.80"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.80" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896639.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59702">
        <property type="protein sequence ID" value="KRC59702"/>
        <property type="gene ID" value="ASE19_01375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1378151at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.155.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022642">
        <property type="entry name" value="CheR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000780">
        <property type="entry name" value="CheR_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036804">
        <property type="entry name" value="CheR_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01739">
        <property type="entry name" value="CheR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00996">
        <property type="entry name" value="CHERMTFRASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00138">
        <property type="entry name" value="MeTrc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50123">
        <property type="entry name" value="CHER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CheR-type methyltransferase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="280" mass="31792" checksum="1158B82875E751C4" modified="2016-01-20" version="1">MTAPTAFASVSALVRRETSMVYDEGKEYLVEARLNPLAAAKGLDLEQYVARLAFDADERRKVIDALTINETSWFRDHTPYQAFTDAMLPPLLEERSMTRRLRIWSAACSSGQEAYSIAMLLDQHLPAGWEYEIVCTDISTQMLERVRAGKYSQVEVNRGLPATSLVRYFTRVGRDWEIAERLRERVTVKHMNLAAPFPMLGAFDVIWLRNVLIYFDAETKADILRRMLPMLAPDGYLLLGSSETTLDMPADLTASWRRDQIGRVPAYRRASAMTLSRTGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRA2</accession>
    <name>A0A0Q8VRA2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03760</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892945.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56928">
        <property type="protein sequence ID" value="KRC56928"/>
        <property type="gene ID" value="ASE19_03760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="961884at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="23"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="407"/>
            <end position="482"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="494" mass="52750" checksum="245A0D0BEFEFB57F" modified="2016-01-20" version="1">MTTTLTSVARIPFLREERDPVGPCLTDGERSLDNAAFAAAVRRLAARFEELGVDPGDTVAVMLPNCAEIITTMFAAWFRGSALNPVNPALTDEEAAYQLEDSASAVIVGDQRARALAESLGIAWVDADLVHGPGGPPVSLTEEPVAIGSDFALVIYTSGTTGRPKGVLLDHDNLDAMSASLIAHFSLSPADRSLLVLPLFHANGLIAGTLSVLRAGGDVVVAPRFSPETFWDHVEAARPTYFSAVPTIYAMLEARTEREVDTSSLRFVICGAAPMPAELITRFEERFGVPLVEGYGLSECSVASNINPVAGPRKPGTVGVALPGQEVAVLTPDGWELPPGHRGEVVIRGANVMRGYLGKPEETAKVLRHGWLFTGDVGIIDEDGYLRIVDRIKDMIIRGGENIYPKEIEDCLYGHPSILEAAVVGAPHDVLGEVPVAYVATKPGLVVSEDELIAHCAAALARYKVPTEIHVLGELPKNSVGKLVKTHLRERRAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRF5</accession>
    <name>A0A0Q8VRF5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_03400</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57053">
        <property type="protein sequence ID" value="KRC57053"/>
        <property type="gene ID" value="ASE19_03400"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="5">
        <location>
            <begin position="30"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC57053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="365" mass="39584" checksum="BEC3D2F19A022963" modified="2016-01-20" version="1">MLLRSKLVTALASPHGVDSYLERFNPMWAAHEVRARIVSIHRETDGSAPVATLTLQPTSTWRGHRAGQHVLVGVEIPGIAKRFTRAFSISSAASGRGEQFTLTIRAHDEGQVSSYLVREAQAGQVLHLSQAQGEFTLVESPATPTISRLVFITGGSGITPAMSMVRTLLRDGYQRNGVAHAGRKVTFLHFARSPEDQIFAEELAEIAAADNGVDVHLRHGDQVFSEFELRRLVPDYKDTDTWLCGPPGLVELVKAAYGDSDRLRMEFFKPAVARAAQPGEEIEGDISFTRSGKTVAASGASLLEQAEELGLKPEFGCRMGICFSCTRTKTAGTVRNILTGEESALPDEEVRICVTAAAGDCHIDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSY8</accession>
    <name>A0A0Q8VSY8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23585</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893947.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57741">
        <property type="protein sequence ID" value="KRC57741"/>
        <property type="gene ID" value="ASE19_23585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1744431at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360347" evidence="1">
        <location>
            <begin position="41"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="283" mass="29484" checksum="0CFA5D704099EB76" modified="2016-01-20" version="1">MATSHKRETARRTPRAGLLAGSLAVLATGAVVSAGVLSSPAPDPDLLATDGNAPAGSVAAATRDLPVLSRGGTDRSADAVGSRVDRMVAAAATAKAVAGADRKRWTTASLNLWTRPDKAGRKVGEIGDGEKVLITGRSYADRVEIVVGGKARWVTTGHLSDEKPLSIAADCTNGTTVPAAVSPNIKKVHEAVCANFPEIGTYGTFRGDGEHAQGIAVDIMVSGPRGWEVAEFVRANASALGVAYVIFSQKIWSVERSGEGWRGMSDRGSVTANHYDHVHVTTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VV47</accession>
    <name>A0A0Q8VV47_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01545</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896608.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59731">
        <property type="protein sequence ID" value="KRC59731"/>
        <property type="gene ID" value="ASE19_01545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1641547at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="209"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="269" mass="30220" checksum="F371A802E819C395" modified="2016-01-20" version="1">MTTLAAARPATQPFIPTPSRLAQKLCIWAGPVMGVLFVIGFLIAGFFPPPSPNQTAAEVAAMIDRDRTAIRFGIVLCLASCGLLMPFMTAFTIQMRRIEGSRPILAYTQLALATMATVEFVIPYVFMLVSTYRADTDPDVTRALFDISWFFFLGVICTFVLQLAIFGVAILMDKREQPIFPRWLGYTNLWLSLMFTPASFIVFFKDGPFAWNGVFVWWVPVTAFLVWFLPNFTMLLKAVDKDDLAPSEQHPTLAAEVAELRRRLDALSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVA8</accession>
    <name>A0A0Q8VVA8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00180</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896843.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59497">
        <property type="protein sequence ID" value="KRC59497"/>
        <property type="gene ID" value="ASE19_00180"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="199" mass="21591" checksum="31C44001D5133FB3" modified="2016-01-20" version="1">MPHDTTTVLGGLDPRVLERLAGAPAHWVDGGPISGWKPVHSRHAKTLAASGQRAKFVFTRIATPVADPVIEGWVRHQDSLVAPRRRTGDALVFWRLAVRQRAFAIDARPRADVATAVENTRRLPLKIGRLRVALAFLPGRLVPAWAVHDGVQPVFVGLPDHHLVPTEDVGESLAAIIALARWKSQVHDVIAAPFADAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW67</accession>
    <name>A0A0Q8VW67_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_00470</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59801">
        <property type="protein sequence ID" value="KRC59801"/>
        <property type="gene ID" value="ASE19_00470"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014325">
        <property type="entry name" value="RNA_pol_sigma-E_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02983">
        <property type="entry name" value="SigE-fam_strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="17"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="109"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="173" mass="19096" checksum="ED17F929FFBC62AA" modified="2016-01-20" version="1">MPDEVATSSPPEFDSWVAARGPALLRLAYVLAGNAADAEDVVQDALSRALPRWDRIVQADDVDAYVKRMVVNAHTSWWRKFRRRESPSSYVDSGETVAGPGEGPGHDERRRLWAACRALPEAQRTAVVLRYYEQLEYDEIAALTGVREGTVRSRVSRGLAVLRADLAGGGDDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW99</accession>
    <name>A0A0Q8VW99_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22725</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892602.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58881">
        <property type="protein sequence ID" value="KRC58881"/>
        <property type="gene ID" value="ASE19_22725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1991198at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="125"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="16524" checksum="5483D02214930515" modified="2016-01-20" version="1">MATGPGIQEPLPTLLRKVLRGTVREHARTERRRVHPAVLHVGIPGGEARELELEPGEHPDLAARIEIVEAMARDFLARDVVPLLWLTRMPEGPDVEDLAWAAAATSASGELGVRLDLVVVTRRSWHDPRSGDGQRWARVRPDPPDQPAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM69</accession>
    <name>A0A0Q8UM69_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19750</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895884.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46108">
        <property type="protein sequence ID" value="KRC46108"/>
        <property type="gene ID" value="ASE19_19750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1849710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="153" mass="16104" checksum="4B2A63C4DA94A06F" modified="2016-01-20" version="1">MILWLTTFAFSIASALLPFLPIEVYILGAGAAEGGTAAAISLGIAAGAGATVGKVIVYEAARRGSESTWAQKKLSGPKIKASYDKWMGRMQGRPWYAVAVMFVAASAGIPPLLAMAAIGGILKMPLWAFIPTVFVGRSIRFTLLFLGVDFAVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UML1</accession>
    <name>A0A0Q8UML1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20525</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896009.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46238">
        <property type="protein sequence ID" value="KRC46238"/>
        <property type="gene ID" value="ASE19_20525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="domain" description="HisKA_3" evidence="2">
        <location>
            <begin position="185"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="405" mass="44267" checksum="E3C8551C5C85AADF" modified="2016-01-20" version="1">MDQPVPEDYQPRLRWYGHAWRYALSLALGLVVWSPVMEAQLDEHPALFWVDLLVGLLAFVLVAFRRRWPFTIALVTILMAPLSSLSAGPAALATVSLATRRRWWQVITIGALNVVFSLVYYAVQPSDSVDPWYVNLGVTVAVVMAITAWGMFIGSRRELLWTLRQRAETAEAERDLRAARARSNERARIAREMHDVLAHRISQISLHAGALTFRQDLSADEMRSSVAVIQAKAHEALTDLREVLGVLRDDEVAVPLTGPQPTYDDLGRLVDDARAAGAAIVYDDRLAGHEPPPAGVARTAYRIVQEGITNATKHAPAATLHVELSGSPQDGVEVVLRNALGFGPTHTPGAGLGLVGLTERAELRGGWLAHGIEDGSTDGLRQPSFVLRAWLPWSSDETGGRPAGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN85</accession>
    <name>A0A0Q8UN85_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21790</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896227.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46458">
        <property type="protein sequence ID" value="KRC46458"/>
        <property type="gene ID" value="ASE19_21790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="3">
        <location>
            <begin position="45"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="413"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="433" mass="46082" checksum="AF488AF68F9CE73C" modified="2016-01-20" version="1">MRIPHALEPRLRLGVLVGFVSACALIFGYLWVNMGGSIPALTSDGYRVVVPIKDGDNVVFDSDVRVAGVAVGKVRGIDVKDSVAMVTLQFDDDDVIPLHEGASVHLRAKSMVEETYLEVIDGKGEVLANGDHLPEESVAEPVQLHDVLTSLDAPTRASLGRTLRALGKGTKGTEEDVAALMNGLGDLGDQGYDVLDALADQSKDLDDMTRSLGVVLRSLDHRQGEIVDLVESADQLTTATAANHKNLEATVRQLPGLVDSAREASGDLTTLATSLAPIAKDLRTASPGLTTALRNLPSVTADVKGLLPSLDVALDRAPATLSRVDDFGSDVSSIVPEARVALADVNPVLAYVAPYKKDLTAFFTNWAAMMANSDANGHYLRVFMVFNETSLKGLPFKTHVGVLDKRNSYPAPGGALNPGPFNGTYPRIEELPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UND6</accession>
    <name>A0A0Q8UND6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21860</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896238.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46469">
        <property type="protein sequence ID" value="KRC46469"/>
        <property type="gene ID" value="ASE19_21860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1690017at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="16107" checksum="F0D6370FDA80B82E" modified="2016-01-20" version="1">MSITEANAYPVELEAGDSANGVSSIVGTLLGQNFENFPERVRFAKRTSRPVAVYSTDTEQACTIMFRGHGAIVHDGLIGRPAVTVRASVDQILDVSQLKMKRGGLVPVGFFTKRGMSVLGQILRRKLVVKGLLTHPITALRFIALVSVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNG8</accession>
    <name>A0A0Q8UNG8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22260</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896306.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46538">
        <property type="protein sequence ID" value="KRC46538"/>
        <property type="gene ID" value="ASE19_22260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="219" mass="25163" checksum="BAE01298A9FC1413" modified="2016-01-20" version="1">MERDWWIGLSGWVLQDGNYTDFAVGQMRQFALEFGYLRHDRLKPTADAELLCEAVDDDAQYRVSADLVRSAREPMEDCFVLDFGLLAYNEWMVLDDLEPPTAGVRLSGEIYLSVDHFAYMDELSKRDGMPALIYTWRIDEIRLDTSPSIQVEHGHPLYVGPDEGPMRVRDPKRRRWRNLDATEMWGDEGSYTLRCTLLDSGPVHSMVRSGPRSPYGPLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNI0</accession>
    <name>A0A0Q8UNI0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21185</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46351">
        <property type="protein sequence ID" value="KRC46351"/>
        <property type="gene ID" value="ASE19_21185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1940853at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="128"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="147" mass="15757" checksum="4DB089086E0C2426" modified="2016-01-20" version="1">MAGLVIGTVVTLAMIAFAVLAVVMGSRTLWEDEAKVGDCLNLDFLDDQLEASCSEPHDGEVIWVGTFDSDLAELYDLVSDEEFCGGLPGLAPAYRSAIESGDYSADLSIDAFDEDDPESGDRFYCYLEPNSGQLDGPIDDAGERDTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNM4</accession>
    <name>A0A0Q8UNM4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Threonine synthase</fullName>
            <ecNumber evidence="7">4.2.3.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_22545</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the gamma-elimination of phosphate from L-phosphohomoserine and the beta-addition of water to produce L-threonine.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the threonine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.1" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896353.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46584">
        <property type="protein sequence ID" value="KRC46584"/>
        <property type="gene ID" value="ASE19_22545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="428821at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004795">
        <property type="term" value="F:threonine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901607">
        <property type="term" value="P:alpha-amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004450">
        <property type="entry name" value="Thr_synthase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00260">
        <property type="entry name" value="thrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 5" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="6">
        <location>
            <begin position="94"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="5">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003648"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR604450-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="425" mass="44842" checksum="28DEA558BCEE14F6" modified="2016-01-20" version="1">MSAVATEPGTTTTSTLREGAFGHAKALACRECGHQVALGPFYACPECFGPLEIAYDFPAITREEIEAGPANIWRYKALLPVPSDIESSPNTEPGFTRLIKADNLGREIGITNLWVKDDSTNPTNSFKDRVVACALSAARELDAKVFACPSTGNLANAVAAAGARAGIKTVVFIPSNLEQPKQVNSAIFTENLVAVDGNYDDVNKLASEIAGEEEGWAFVNVNVRPYYAEGSKTLGYEIAEQLGWRLPDQVVIPVASGSQLTKVDKSFQELIKLGLVEDKPYRIFGAQATGCGPVATAFKAGTDAIRPVKPDTIAKSLAIGNPADGIYVLDIARRTGGAIEEVTDEEIRAGIVLLARTEGIFTETAGGTTTAVAKKLVETGQLDPELETVIINTGHGLKTLDAVSGHVSAAATIAPTYSAFKATGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNP2</accession>
    <name>A0A0Q8UNP2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Peroxiredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22525</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896349.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46580">
        <property type="protein sequence ID" value="KRC46580"/>
        <property type="gene ID" value="ASE19_22525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984062at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003718">
        <property type="entry name" value="OsmC/Ohr_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036102">
        <property type="entry name" value="OsmC/Ohrsf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02566">
        <property type="entry name" value="OsmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82784">
        <property type="entry name" value="SSF82784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="154" mass="16778" checksum="0C5DB798E7D51B78" modified="2016-01-20" version="1">MATHRYALDLVWQGNHGSGTSGYRDYGRDVLLRAEGKPDLLGSADPTFRGEASRWNPEELLLAALAQCHLLSYLHSAVNHGIVVTGYDDSPVGTMEQVGQGGRFTEVLLRPRVRIADAAQARLAGQIHEEASRNCFIAASVNFPVRHEPVTEVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNS8</accession>
    <name>A0A0Q8UNS8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_21820</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896232.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46463">
        <property type="protein sequence ID" value="KRC46463"/>
        <property type="gene ID" value="ASE19_21820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1058434at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030296">
        <property type="entry name" value="MlaF/Mkl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43023:SF6">
        <property type="entry name" value="PTHR43023:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="24"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="56"/>
            <end position="63"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="270" mass="29908" checksum="5DC28331251AD3F2" modified="2016-01-20" version="1">MTAVLTAAPEHRLAVNEPEKPHSMQVRNLHKKFGSFEVLTGLNIDFVDDAITTVLGPSGTGKSVLLKHLVGLLQPDQGEVRVFGQDIWSMSEHERYELRKRFGVLFQDGALFGSMNIFDNIAFPLRKHTDMAESEIGDFVMTRMAEVGLERSAHKYPSEVSGGMRKRAGFARGLILNPDIVLFDEPDSGLDPVRTSLLCDLIKQMHEEHGGTYLLVTHNIAAARSCSDYVGMVWKGKLVHYGDCEEAFNSDDPFVRQFLAGESAGPLGMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNU4</accession>
    <name>A0A0Q8UNU4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ribose 5-phosphate isomerase</fullName>
            <ecNumber evidence="4">5.3.1.6</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21095</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LacAB/RpiB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.6" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896397.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46628">
        <property type="protein sequence ID" value="KRC46628"/>
        <property type="gene ID" value="ASE19_21095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1346802at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004751">
        <property type="term" value="F:ribose-5-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011860">
        <property type="entry name" value="Rib-5-P_Isoase_Actino"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003500">
        <property type="entry name" value="RpiB_LacA_LacB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036569">
        <property type="entry name" value="RpiB_LacA_LacB_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30345">
        <property type="entry name" value="PTHR30345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02502">
        <property type="entry name" value="LacAB_rpiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005384">
        <property type="entry name" value="RpiB_LacA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89623">
        <property type="entry name" value="SSF89623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02133">
        <property type="entry name" value="RPI_actino"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00689">
        <property type="entry name" value="rpiB_lacA_lacB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="D-ribulose 5-phosphate binding" evidence="3">
        <location>
            <begin position="8"/>
            <end position="9"/>
        </location>
    </feature>
    <feature type="region of interest" description="D-ribulose 5-phosphate binding" evidence="3">
        <location>
            <begin position="71"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>D-ribulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>D-ribulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>D-ribulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>D-ribulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR005384-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="167" mass="18038" checksum="8977282650BC74D7" modified="2016-01-20" version="1">MRVHLGCDHAGLELKSHLTGWLTEHGYEPVDHGPFVYDALDDYPVFCLRAAEGVRADREAGLDSLGVVIGGSGNGEQIAANKVKGVRAALAWSEETASLAREHNDAWVVAVGGRMHSLEEMTRLVEVFLSTPFPGDERHVRRIGQMASYEVTGELPPLPESAQGHGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8USL6</accession>
    <name>A0A0Q8USL6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Histidine kinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_20580</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46617">
        <property type="protein sequence ID" value="KRC46617"/>
        <property type="gene ID" value="ASE19_20580"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029151">
        <property type="entry name" value="Sensor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016120">
        <property type="entry name" value="Sig_transdc_His_kin_SpoOB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039506">
        <property type="entry name" value="SPOB_a"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14689">
        <property type="entry name" value="SPOB_a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103190">
        <property type="entry name" value="SSF103190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55890">
        <property type="entry name" value="SSF55890"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359360" description="Histidine kinase domain-containing protein" evidence="8">
        <location>
            <begin position="42"/>
            <end position="558"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="190"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="9">
        <location>
            <begin position="441"/>
            <end position="550"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="558" mass="58074" checksum="3C2B1734EE2B1486" modified="2016-01-20" version="1">MTSLFRRGELTLAAKVLLLQLAVVVLLLVAVGVLSVRQSNAAFAEERGAQMRTVAEYVAQLPQVRDQLEAVAAGTAEASDTPRALAPYAAQGVGLSSASDVLIVSPDGIVLAGTDPTRVGERARVGDRNAFQARGGAGDVEVHGERAVAGHAPVQSDGPDVRIGDFLAIVVAEERYPSVTERLGAAVPDLLLVLGLGVLLLGVLGTWVVARVVRRSTRGLGTTELANLADQREALLHAIREGVVGVGTDGRVTVMNDAARATLALDDGRDPVGRPVASLGLDPHVVALLTGGDDDVRDALALVGTRVVVFNRNRASSGGRGIGTVTTLRDRTELVSLQSQLSSNLSITDTLRAQTHEFDNRLHTISGLVQLGEYDEVAALVGTLTRHRAEVGEYVGKRLADPAVAALVVAKHAVAEERGVTLELDPGSRLPVVPPDVVADLTTVVGNLVDNAVDACAGMPDATVELWIHADEDAVHVRVRDNGPGVPPELRDAVFVRGFSTKEEVLGGRGIGLPLVRLICGQRGGEVVVDDAEAAGGGGAEFRVVLPLGAAVGQDGRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU60</accession>
    <name>A0A0Q8UU60_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893102.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48696">
        <property type="protein sequence ID" value="KRC48696"/>
        <property type="gene ID" value="ASE19_17285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1196738at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="40"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="312" mass="33161" checksum="7A096F9401448F25" modified="2016-01-20" version="1">MTFPAVRIPEQPKRPTLEGSVAVRDGRRLSFAEYGSRRGPALVWMHGTPGARRQIPVDARQYAEDAGLRIIGIDRPGIGSSTPHLYPNVLDWTEDLALLLDALAIDELRVIGLSGGGPYALAAGAAMPDRVQGVGVLGGVAPTRGPDAAEGGIIQLAVHAAPLLAATRVPLGVALTGAIRTVKPLAGPALDLYAAVQPPGDKNLLGRPEFKAMFLDDLLNGSRFQTSAPLSDLILFTREWGFGLEDVRVPVRWWHGDDDHIVPFRHGQHCVDRLPNATMTTIDGESHLGGLGIAQQVMETLVALGAEEGLST</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUL7</accession>
    <name>A0A0Q8UUL7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Abhydrolase_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18445</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893295.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48894">
        <property type="protein sequence ID" value="KRC48894"/>
        <property type="gene ID" value="ASE19_18445"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Abhydrolase_3" evidence="1">
        <location>
            <begin position="2"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="83" mass="9030" checksum="FB951BE409E0F42F" modified="2016-01-20" version="1">MGDHDLFRDEDLAYAHLLLASGSLVELHLCAGAYHAFDLFALASAVPQSFTGSWYCYLGRHFGAAAIERIDEPSEPSEPSAET</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUN5</accession>
    <name>A0A0Q8UUN5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">AMP-dependent synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_18420</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893291.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48890">
        <property type="protein sequence ID" value="KRC48890"/>
        <property type="gene ID" value="ASE19_18420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="961884at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="2">
        <location>
            <begin position="8"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="3">
        <location>
            <begin position="396"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="475"/>
            <end position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="498" mass="52679" checksum="6BC55E4DE5301C9A" modified="2016-01-20" version="1">MTFPTLVDKRAAEHPAGPAVADGTTSLTNADLLARVGAAAAQLADLGIGSGDVVALRLTNRVEFVVLLFAAWRLGATVTPVNPALTDVEVERQLDDSAARLLVIEEDSAGVGDVPTLSVADLARETSTDVPPVEDPSALALLIYTSGTTGTPKGVMLDHANLDAMTRMGQAALEVGPEDRCLLILPLFHVNGIVVSILTPLRAGASVVIAERFNPTTFFDSIERHRPTYFSAVPTIYSMLAALPTDVRPDTSSVRFAVCGAAPASADLLARFEARFGFPLVEGYGLSEATCGSTINPVDGLRKPGTVGLPFPGQDLRILGAEGRPVPPGENGEVEVRGANVMRGYLGRPEDTAAVLTDGWLRTGDVGHLDDDGYLTIVGRSKEMIIRGGENVYPKEIEDVLAGDLAVLEAAVIGVPDEKWGEIVVAYVQPRPGATIDVEALKVRCRDQLSGYKRPTAIHVLESLPKNAVGKLDKRSLRDQDRSMANASMNPAVAMKPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUV7</accession>
    <name>A0A0Q8UUV7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Histidine kinase</fullName>
            <ecNumber evidence="3">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_18905</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893372.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48970">
        <property type="protein sequence ID" value="KRC48970"/>
        <property type="gene ID" value="ASE19_18905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033463">
        <property type="entry name" value="sCache_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029151">
        <property type="entry name" value="Sensor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016120">
        <property type="entry name" value="Sig_transdc_His_kin_SpoOB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17203">
        <property type="entry name" value="sCache_3_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103190">
        <property type="entry name" value="SSF103190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55890">
        <property type="entry name" value="SSF55890"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="23"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="179"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="11">
        <location>
            <begin position="313"/>
            <end position="533"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC48970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="534" mass="56551" checksum="483C38334F3A9D22" modified="2016-01-20" version="1">MGQNDEVTRRRPLRDRPVARQVLLLQVATVLLLVVTGILMASYDARRDSRSRATQRAVAVAQTVADSPTVRAALRTDDPTAGLQPWAEEVRRDTDTDFVVVMGLDRTRYTHPDPSLIGGKFAGDLGGAPGGAVFTQQYKGSLGPSVRSVVPVEDGGKVVALVSVGITVSDINRGLRRDITIVVLCGGLILALGMAGAWLLGRRLHRVTHGMGEQELARMYEYYSAVLHSVREGLLLLDGDGRVQLVNDEARRLLALPDDVVGTRIEDLGLAPGLVAAARGRTAESDDLYLAGERILLVSSAPARWDGRDVGSVVTLRDHTELRSVTGELEVVRRLTESLRSQNHESANRLHTVVSLIEMGRPDDAVTFATEELQVAQLLADRVVGAVDDPVVAALLLGKSAEAAERGIDLRIAGTLPTDSGIPGRDLVTVLGNLVDNAFDAVADAGTRQVEVHLSGAGARLEVRVDDSGPGLDEAAAARVLDRGWTTKAEPGTGRGLGLALVVQVARRHGGDVTVGRSGLGGARFTVTTTGAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UW31</accession>
    <name>A0A0Q8UW31_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 9">Catalase-peroxidase</fullName>
            <shortName evidence="8">CP</shortName>
            <ecNumber evidence="8 9">1.11.1.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Peroxidase/catalase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">katG</name>
        <name evidence="12" type="ORF">ASE19_19665</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 9">
            <text>2 H2O2 = 2 H2O + O2</text>
            <dbReference type="Rhea" id="RHEA:20309"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="EC" id="1.11.1.21"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 9">
            <text>AH2 + H2O2 = A + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:30275"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="EC" id="1.11.1.21"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
        <text evidence="8">Binds 1 heme b (iron(II)-protoporphyrin IX) group per dimer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer or homotetramer.</text>
    </comment>
    <comment type="PTM">
        <text evidence="8">Formation of the three residue Trp-Tyr-Met cross-link is important for the catalase, but not the peroxidase activity of the enzyme.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8 9">Belongs to the peroxidase family. Peroxidase/catalase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.21" evidence="8 9"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895873.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46097">
        <property type="protein sequence ID" value="KRC46097"/>
        <property type="gene ID" value="ASE19_19665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="49441at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004096">
        <property type="term" value="F:catalase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042744">
        <property type="term" value="P:hydrogen peroxide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01961">
        <property type="entry name" value="Catal_peroxid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000763">
        <property type="entry name" value="Catalase_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002016">
        <property type="entry name" value="Haem_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010255">
        <property type="entry name" value="Haem_peroxidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019794">
        <property type="entry name" value="Peroxidases_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019793">
        <property type="entry name" value="Peroxidases_heam-ligand_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30555">
        <property type="entry name" value="PTHR30555"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00141">
        <property type="entry name" value="peroxidase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00460">
        <property type="entry name" value="BPEROXIDASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00458">
        <property type="entry name" value="PEROXIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48113">
        <property type="entry name" value="SSF48113"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00198">
        <property type="entry name" value="cat_per_HPI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00435">
        <property type="entry name" value="PEROXIDASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00436">
        <property type="entry name" value="PEROXIDASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50873">
        <property type="entry name" value="PEROXIDASE_4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8 9" id="KW-0349">Heme</keyword>
    <keyword evidence="7 8 9" id="KW-0376">Hydrogen peroxide</keyword>
    <keyword evidence="6 8 9" id="KW-0408">Iron</keyword>
    <keyword evidence="4 8 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 8 9" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PEROXIDASE_4" evidence="11">
        <location>
            <begin position="141"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="domain" description="PEROXIDASE_4" evidence="11">
        <location>
            <begin position="518"/>
            <end position="736"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="17"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="8">
        <location>
            <position position="270"/>
        </location>
        <ligand>
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="8">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <feature type="cross-link" description="Tryptophyl-tyrosyl-methioninium (Tyr-Met) (with Trp-107)" evidence="8">
        <location>
            <begin position="229"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003451"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC46097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="736" mass="80200" checksum="EAFB8E7A0CC4563F" modified="2016-01-20" version="1">MSENQAGCPVAHDGSESENPALSSPTPKTHRPRSNQDWWPNQLDLSVLHAHAPAGNPLGEAFSYKEEFAKLDVEALKRDITEVLTTSQDWWPADFGHYGGLMIRLSWHAAGTYRIFDGRGGAGDGAQRFAPLNSWPDNGNLDKARRLLWPVKQKYGQKISWADLLVLAGNVALESMGFKTFGFAFGREDVWEPEEINWGTEDTWLGDERYSGERDLTNPLGAVQMGLIYVNPEGPNGNPDPLASARDIRDTFARMAMNDEETVALIAGGHTFGKTHGAGDAALVGPEPEGAPIEAQGLGWLSSYGTGKGADAITSGLEVTWTDKPTQWSNRFFEILFGYEWELTESPAGAKQWVAKDAEAIIPGPAADSPKRLPTMLTSDLALRFDPEYEKISRRFLENPDEFALAFAKAWYKLLHRDMGPVERYLGPWVPEAQLWQDPVPAVDHPLVDEQDVAALKAKVVESGLGVAELVSTAWASAATFRTTDKRGGANGARIRLAPQKDWEVNQPQQLATVLGKLEEIKAAFDAQGEKKISLADLIVLAGSAAVEKAAKDGGFDITVPFTAGRTDATEEQTDTDSFAVLEPRADGFRNYARPGEKLPLETLLLERAYMLDLSAPELTVLLGGLRTLGTNVDGSSHGVLTAQPGVLSTDFFTNLLAPGAVVKASEGEEHVYEIRDAATGDVRWTATAADLIFGSNSQLRALAEVYASDDAKDKFARDFVAAWVKVMELDRFDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXV4</accession>
    <name>A0A0Q8UXV4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15745</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50072">
        <property type="protein sequence ID" value="KRC50072"/>
        <property type="gene ID" value="ASE19_15745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011044">
        <property type="entry name" value="Quino_amine_DH_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50969">
        <property type="entry name" value="SSF50969"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="499" mass="52989" checksum="F2C64374E57E817B" modified="2016-01-20" version="1">MGVDMVQDQARGGRAQHAVRRLLVAGVAAAVVVTGAVLTAGSSQAELDLGGVPRATCATGDLKETSIQGRVPKADYESGRALKGYRCNTVQVGHHGKRSALGSGGFKVQRYTDVTGRTCAYYDSALMVGLNVPGVLTGGAGLGVVVLDMTDPAKPVRTANLITPAMLQPHESLLVNQKRGLLAAVMGTLATAPGILDVYDVSKDCRHPRLMSTTLSGVMGHESGFAPDGRTFWTAGAAGFTLTAVDLTEPRRPRILKTKVGVVYHGLRLSDDGRTMYVANIGSPSGKDAALIDGAGLDVLDVSDVQDRRPSPQIRTLSRLTWQESSIPQVAEPFTRGSRKYVFEVDEFSDLFGDITKFNSPNSPVGAARIIDVTNPRAPKVVSNVRLEVHDPAIRASLKGDPGATTIVRSYTGHYCSLPTRTNPRIAACSMIGSGLRLFDISDVARPREVGYFNVPGPDGASAMSQPAWDLKRKQVWYTDTDEGLFVVGLRGPAAALIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY59</accession>
    <name>A0A0Q8UY59_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Urease accessory protein UreG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ureG</name>
        <name evidence="6" type="ORF">ASE19_16500</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. UreD, UreF and UreG form a complex that acts as a GTP-hydrolysis-dependent molecular chaperone, activating the urease apoprotein by helping to assemble the nickel containing metallocenter of UreC. The UreE protein probably delivers the nickel.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the SIMIBI class G3E GTPase family. UreG subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893671.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50202">
        <property type="protein sequence ID" value="KRC50202"/>
        <property type="gene ID" value="ASE19_16500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1134430at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01389">
        <property type="entry name" value="UreG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003495">
        <property type="entry name" value="CobW/HypB/UreG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004400">
        <property type="entry name" value="UreG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31715">
        <property type="entry name" value="PTHR31715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02492">
        <property type="entry name" value="cobW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00101">
        <property type="entry name" value="ureG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 4" id="KW-0996">Nickel insertion</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="cobW" evidence="5">
        <location>
            <begin position="16"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="20"/>
            <end position="27"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="236" mass="25300" checksum="143AC4209C2BCC0A" modified="2016-01-20" version="1">MHDHHPHDHVQRPLRLGVCGPVGTGKSSLIALLCRELSARLSLAVVTNDIYTDEDARFLRSAGVLAEDRIRAVETGACPHTAIRDDISANLMEVEALEQDYPDLDVVLLESGGDNLTATFSPALVDAQVFVLDVAGGGDVARKGGPGIERADLLVVNKTDLAPYVGVDVVQMRADAVAARDGRPVVALSRHDRESIDALLDWVLAVRSAHQHGDLVPVDPGPMAPHFHADEHAHSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYH7</accession>
    <name>A0A0Q8UYH7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17125</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893783.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50314">
        <property type="protein sequence ID" value="KRC50314"/>
        <property type="gene ID" value="ASE19_17125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1699302at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="119" mass="13490" checksum="35F62A45C4F3A684" modified="2016-01-20" version="1">MARYEVNPDAVTRARELIAAHQYVLDSDWGEVQPDAEAGNQLLERHGWAAYAAWHLGLTQGANDETKARYAFVYGDYRRVHRSGLIACVYRAAEWRHKAVERAAYDLLQELDRTAGLDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ49</accession>
    <name>A0A0Q8UZ49_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_21750</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896219.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46450">
        <property type="protein sequence ID" value="KRC46450"/>
        <property type="gene ID" value="ASE19_21750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="744602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07106">
        <property type="entry name" value="ALDH_AldA-AAD23400"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044086">
        <property type="entry name" value="FUS7/LUC3-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="25"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="249"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="476" mass="50371" checksum="546B73949A94B1F0" modified="2016-01-20" version="1">MTSAPATGYKVPQLTINGTTVSSPDSIAVVDPSTGEPFIEVPSASVEQLDEAVVAARAAFKTWGKLSLTERQDAIRKVGEVVKANIDELAELVMREQGKPLGNAKGEIMASLRQVEYFGSIELEPEVIKDDETGRAEVRHEPIGVVGAITAWNYPVLAAMFKLVPALVAGNVMILKPSPYTPVATLRLGELLQDALPAGVFQVLAGGDELGRAFTTHADIDKIAFTGSVPTGKAIMKAAADTLKRVTLEAGGNDAGIVLEDADPQVIGKDLFWAAFSNTGQVCAALKRLYVPESKLEEYSQVMAAEAAKVVVGPGTQEGVVAGPMQNAAQLAHVQRLAADARANGADFFFEGEVPEGPGYWFPFTLVRNVSEGVALVDEEPFGPILPILTYTDLDDAIERANSTSFGLGASVWTSDPDGAVEVADRLEAGSVWINQHPVVTASIPFGGIKESGVGVEGSKYGLLAYTNIRVINLKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V223</accession>
    <name>A0A0Q8V223_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15010</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896463.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51396">
        <property type="protein sequence ID" value="KRC51396"/>
        <property type="gene ID" value="ASE19_15010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1345710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000572">
        <property type="entry name" value="OxRdtase_Mopterin-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036374">
        <property type="entry name" value="OxRdtase_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00174">
        <property type="entry name" value="Oxidored_molyb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56524">
        <property type="entry name" value="SSF56524"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="SSF81296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="164"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="domain" description="Oxidored_molyb" evidence="2">
        <location>
            <begin position="240"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="513" mass="55235" checksum="E0B4F7384FB07DB4" modified="2016-01-20" version="1">MRTSRTWWALSGLVAGAVGLGLSYAAAALLHVRESPVVAVAEGVTALTPGSVVKWAINTFDRDDKKVLVVGILVVLAVTFALLGRSARRRWWAAVTGYVVLAAVAFVAVASKPTPKVTDFAPVVVGLVAWVVTLAVLAEWLRRWELVEDGEDPAVEPTHTRRHFFVAVGGAAALAAAGGLVGRIAGSARRRAEESRRLLRIEGVTAPAVPNGAELDIERIVPWQTPSNNFYLIDTAFIKPTIEPADWSLRIHGMVENEITLTYADLVAREITEDWITLNCVSNPVGGELIGNAWWSGFLLSPLLAEARPLAGADAVLQTSDDGWTCLTPLAAMTDRSRNAMLAVAMNGEPLPIEHGFPVRTLVPGLYGYVSATKWVVDMEVTRFGEAAGYWTDKGWSEQGPVKLSSRIDVPHDGDDVAAGELVVAGSAWLQHTGVARVEVQVDGGPWQEAQLATAVNTDTWVQWRRVVEVEEGEHQLRVRATDRDGRVQTGVVADVLPDGATGWHTIDVNAKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4B2</accession>
    <name>A0A0Q8V4B2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 10 11">Ribulose-phosphate 3-epimerase</fullName>
            <ecNumber evidence="7 10 11">5.1.3.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">rpe</name>
        <name evidence="15" type="ORF">ASE19_19475</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10 11">
            <text>D-ribulose 5-phosphate = D-xylulose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:13677"/>
            <dbReference type="ChEBI" id="CHEBI:57737"/>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
            <dbReference type="EC" id="5.1.3.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10 13">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="10 13">Binds 1 divalent metal cation per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="10">Carbohydrate degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 10 11">Belongs to the ribulose-phosphate 3-epimerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.1" evidence="7 10 11"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49133">
        <property type="protein sequence ID" value="KRC49133"/>
        <property type="gene ID" value="ASE19_19475"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00705"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004750">
        <property type="term" value="F:D-ribulose-phosphate 3-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019323">
        <property type="term" value="P:pentose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00429">
        <property type="entry name" value="RPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02227">
        <property type="entry name" value="RPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026019">
        <property type="entry name" value="Ribul_P_3_epim"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000056">
        <property type="entry name" value="Ribul_P_3_epim-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11749">
        <property type="entry name" value="PTHR11749"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00834">
        <property type="entry name" value="Ribul_P_3_epim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001461">
        <property type="entry name" value="RPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01163">
        <property type="entry name" value="rpe"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01085">
        <property type="entry name" value="RIBUL_P_3_EPIMER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01086">
        <property type="entry name" value="RIBUL_P_3_EPIMER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="13" id="KW-0170">Cobalt</keyword>
    <keyword evidence="9 10 11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="13" id="KW-0464">Manganese</keyword>
    <keyword evidence="8 10 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="10 14">
        <location>
            <begin position="138"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="171"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10 14">
        <location>
            <begin position="193"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10 12">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="10 12">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10 14">
        <location>
            <position position="6"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 13">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 13">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 13 14">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10 13">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00001954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00009541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRNR" id="PIRNR001461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR001461-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR001461-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR001461-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC49133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="216" mass="23251" checksum="E8BAD41D9ED837A5" modified="2016-01-20" version="1">MQITPSILNSDFARLGEEVARIPGADWVHVDVMDNHFVPNLTFGPAMVEALARVSPVPLDAHLMIEDADRNALAYVEAGCGSVTFHVEAARAPVRLAREIRSAGARASMALRPATPIEPYEDLLPELDMVLIMTVEPGFGGQKFLDMCLPKIRRARALMDKHGVETWLQVDGGVSLETIERCAEAGADVFVAGSAVYSAEDPDAMVAALRAKAEAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5C4</accession>
    <name>A0A0Q8V5C4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">LysR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09410</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894583.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52645">
        <property type="protein sequence ID" value="KRC52645"/>
        <property type="gene ID" value="ASE19_09410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1928091at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="248" mass="24905" checksum="9A44755FA5E54488" modified="2016-01-20" version="1">MRIVIFGAGLIGSQLAAHLADGGHDVVALGREAGIDTTTGQGVAEAVAGADVVVDLTNSPSWADDDVLAFFRDSTAHLVAAGAAAGVGHHVILSIVGLDRLTDAGYMRAKLAQEAGVVGGAVPSTIVRSTQFFEFVPGIADASTEGDVVRATPGKLQPIASSDVVAHLAEVVTGAPANGVVEIAGPDVLGIDELVKRLFAATGDPRTVVTDPASGYFGAALDDTALVATPGAGAWIAPTSYDAWLASK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5N6</accession>
    <name>A0A0Q8V5N6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10080</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894690.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52757">
        <property type="protein sequence ID" value="KRC52757"/>
        <property type="gene ID" value="ASE19_10080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1814268at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="23279" checksum="826386D6EF41D45E" modified="2016-01-20" version="1">MPIARSTFAGVATGAVLLAGAVGFGVGLPKVVDEPDKASATDLPALPDRLDDRFVALAALTTEDTGGTSSAEELKTVADGALKSESEASSNLAAMYDGAVARSYIDAKALAGAAQSQARPAQFAVTVVPGDAGLVIPSGPFPIEQSGTHYELKELDGRRCSLIWSEPLDPTTGAPTGAEPDGSNYQVECRAERDGLTYDLYSSGLKPEEAVQYLDLVLEKTASDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5Q1</accession>
    <name>A0A0Q8V5Q1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavin reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09040</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894517.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52580">
        <property type="protein sequence ID" value="KRC52580"/>
        <property type="gene ID" value="ASE19_09040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1681849at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="19"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="173" mass="18161" checksum="FDEEE436CB9BE3ED" modified="2016-01-20" version="1">MTVLATNQDLDPARLRQAFGVFPSGVVAVAAEVGGRPLGLAASSFTSVSLDPPLVSINLAATSKTWPDLRAAPHLGVTVLADHHDVVCRQLAGPVDSRFDGVPLTTTPEGAVLVADGLAQFDCTIYREVEAGDHVLVLLELHAVAHVDHASTQTPLVFHRSGFGRVRPLHAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5R5</accession>
    <name>A0A0Q8V5R5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Flagellar biosynthetic protein FliQ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">fliQ</name>
        <name evidence="8" type="ORF">ASE19_09335</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FliQ/MopD/SpaQ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894568.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52630">
        <property type="protein sequence ID" value="KRC52630"/>
        <property type="gene ID" value="ASE19_09335"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1939288at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002191">
        <property type="entry name" value="Bac_export_3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34040">
        <property type="entry name" value="PTHR34040"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01313">
        <property type="entry name" value="Bac_export_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004669">
        <property type="entry name" value="FliQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00952">
        <property type="entry name" value="TYPE3IMQPROT"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0966">Cell projection</keyword>
    <keyword evidence="8" id="KW-0969">Cilium</keyword>
    <keyword evidence="8" id="KW-0282">Flagellum</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="89" mass="9670" checksum="82C62D09F1D35740" modified="2016-01-20" version="1">MTDTAIIEIALKTMLVALKLSAPILATSLVIGFAISLFQSMTQIQEFTLAFVPKLVGVGVALLFCGNWMLHTLMAFTAELFQLLPDLLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5Y8</accession>
    <name>A0A0Q8V5Y8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">Orotate phosphoribosyltransferase</fullName>
            <shortName evidence="4">OPRT</shortName>
            <shortName evidence="4">OPRTase</shortName>
            <ecNumber evidence="2 4">2.4.2.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">pyrE</name>
        <name evidence="6" type="ORF">ASE19_10480</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>diphosphate + orotidine 5'-phosphate = 5-phospho-alpha-D-ribose 1-diphosphate + orotate</text>
            <dbReference type="Rhea" id="RHEA:10380"/>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57538"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1 4">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.10" evidence="2 4"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894761.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52828">
        <property type="protein sequence ID" value="KRC52828"/>
        <property type="gene ID" value="ASE19_10480"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00119"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004588">
        <property type="term" value="F:orotate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01208">
        <property type="entry name" value="PyrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023031">
        <property type="entry name" value="OPRT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004467">
        <property type="entry name" value="Or_phspho_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00336">
        <property type="entry name" value="pyrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 4" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="5">
        <location>
            <begin position="45"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="region of interest" description="5-phosphoribose 1-diphosphate binding" evidence="4">
        <location>
            <begin position="116"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="25"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>orotate</name>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>orotate</name>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="181" mass="18927" checksum="DDF867AD94733DEA" modified="2016-01-20" version="1">MTTTDTALAADIDATCRLTGEFTLRSGQVSNEYFDKYLFEADPQLLARVAREVAQLLPGDAELLGGLEMGGIPIATAVSQLVGIPVVFVRKKAKEYGTAKLAEGPLFDGRRIVLIEDVITTGGAVRDATNALRAGGAIVDTVVCAIDRSPAGENPLADVSLEVRAVLTKAELDAARAAAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5Z7</accession>
    <name>A0A0Q8V5Z7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Protein GrpE</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">HSP-70 cofactor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">grpE</name>
        <name evidence="7" type="ORF">ASE19_10560</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 4">Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 5">Belongs to the GrpE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52844">
        <property type="protein sequence ID" value="KRC52844"/>
        <property type="gene ID" value="ASE19_10560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1906715at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000774">
        <property type="term" value="F:adenyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051087">
        <property type="term" value="F:chaperone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042803">
        <property type="term" value="F:protein homodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00446">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.22.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01151">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000740">
        <property type="entry name" value="GrpE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013805">
        <property type="entry name" value="GrpE_coiled_coil"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009012">
        <property type="entry name" value="GrpE_head"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21237">
        <property type="entry name" value="PTHR21237"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01025">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00773">
        <property type="entry name" value="GRPEPROTEIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51064">
        <property type="entry name" value="SSF51064"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF58014">
        <property type="entry name" value="SSF58014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01071">
        <property type="entry name" value="GRPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0346">Stress response</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000639"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="189" mass="20578" checksum="E4FCD0CFDCF1D61A" modified="2016-01-20" version="1">MTEDNLNPEEGELQETAAPSPEGDEAPAADAAEGAASLEVPEAEADELTVTKMELEERTLDLQRNQAEFVNYKRRVERDRELLKENARYAVLTPIIDVLDTIDRAREHEPLEGGFKATAEQLERVVAGLGLVKFGEVGDAFDPTVHEALSHIGTDAEVEVTTCKVIAKAGYKIGDRVVRAAQVLVVDPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V610</accession>
    <name>A0A0Q8V610_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">SLT_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_10190</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894711.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52778">
        <property type="protein sequence ID" value="KRC52778"/>
        <property type="gene ID" value="ASE19_10190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="710313at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043426">
        <property type="entry name" value="MltB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031304">
        <property type="entry name" value="SLT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30163">
        <property type="entry name" value="PTHR30163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13406">
        <property type="entry name" value="SLT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359734" description="SLT_2 domain-containing protein" evidence="2">
        <location>
            <begin position="30"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="domain" description="SLT_2" evidence="3">
        <location>
            <begin position="90"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="276"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="292"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="410" mass="41322" checksum="C60966C222621C44" modified="2016-01-20" version="1">MSRKRLGRLQRAATIIPLALLSAAWTASVAGIGGVSAPVIAADSPGRVTDDTSVPEEEIEDPASLSDPSEVEGLDGNTAGIVNAASTNAIPAAALAAYQRAETVINSADKSCKITWQLIAAIGRVESDHGRFGGNVLNDDGVATPGIYGIPLNGKKNTKAVSDTDAGVYDNDTQWDRAVGPMQFIPSTWQVVGVDADDDAARNPQDIDDAALAAAVYLCSGDGDLSTVAGQRAAVYRYNHSDAYVDLVLKIMNAYLEGDFTSVPNNSTAAGYVVPEPPSFNVGGPKGTKGHNGHTGGSTGGTSGGGTDTPGGGGTDTPGGGDGGTPGGTPGGGGDGGTPTVPNVPDVPAAVKDTVDKVDTGVGTVTSNLISGLLGPLTKSEAQTKCQATYPKLTQTVQLLNCLLSYGLGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V634</accession>
    <name>A0A0Q8V634_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10570</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52846">
        <property type="protein sequence ID" value="KRC52846"/>
        <property type="gene ID" value="ASE19_10570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="437"/>
            <end position="502"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="504" mass="53630" checksum="A2A15993B37F9CCD" modified="2016-01-20" version="1">MWDRISRGELNAAATDAQLLLSSLDDPAGRAEAHAALGLVLQRVGRIAESRDRFARAAELTRTQPRLQASYVADEAGSRFLLGDLAGAAREGEQARRLGERHANRFAACEALNTLAAVAMAEGRPADALRLTREGVRLQAAQRESSGGAPMSHLYLGLALVELDRFADAEDTFTTGLAAANAGQLTWFHSMRGLARFLSGRWDDASEDLRAALESADRTGTLIARPLARGILGLVEAIRGNVTTAATLVAPHEGTLIAVGMPGEEWLAMARAAMAEHPAASYESLVEGWLHTRRTPYFLSWRALAPAVVHQAVRHGDRDLATEVTQQAEAGAVLADDVGSALGAALRCRAILDADPDVAVAAVDALRPSGRPFAFASACLEAALLLHAAGDDERSRSVLHESAGAFHGLRATPWLAYAGQRMVQLASPPPAPGRPAVVPGWELLTAAERDIAVLVAKGLSNRQIGAELFVSPRTVQTHTSHIYAKLRISSRVQLSALLHQHGLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V687</accession>
    <name>A0A0Q8V687_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15220</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51433">
        <property type="protein sequence ID" value="KRC51433"/>
        <property type="gene ID" value="ASE19_15220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1774891at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="201" mass="21285" checksum="08B0F0B50DBF1ACD" modified="2016-01-20" version="1">MADRPHHKPVPREAAFFDEQQDGVDPALVTEAAERAAVLLVRGAHDSGDADVAERLVHLADTEGIEAIAEVWSHAAADSLAGCLWRLYLLRSWVYADPAGVARQFDAGRSSAEFAQVVAGVADPPGPDELRHMVDEVLRGIASSDFADVLFRAAAFARVVAAGRAGLAEVADADVRRMLALAEQLEAAGHVELARGLGSTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6K3</accession>
    <name>A0A0Q8V6K3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11630</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894966.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53036">
        <property type="protein sequence ID" value="KRC53036"/>
        <property type="gene ID" value="ASE19_11630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1932433at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="164" mass="17391" checksum="F1A554AED5978F8B" modified="2016-01-20" version="1">MDPTSSDQYESQTEKLEAAGRDLDSAHEEINTLSDQVSDAEAQVDALLADQPPGEGADEPALSDGVAIAPKNIKIALRTRSKECFGSAGCLVTVQADPNYVGTQDASTGSWEITYEIRGGEDGPVIETMTLTDGTFTFPEEQSLETASSGTRLQAVVTEVYALD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6K6</accession>
    <name>A0A0Q8V6K6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17280</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893101.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48695">
        <property type="protein sequence ID" value="KRC48695"/>
        <property type="gene ID" value="ASE19_17280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1707635at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="214" mass="22729" checksum="6187971EE1A589D2" modified="2016-01-20" version="1">MTEGGAASNAGQGPGRRRAEKPSRRAGGNLGGVPRLPLPRISLQTRSGRLTVGGLAALLLLAWFVWYAMTPEKLPTTEKTVSASGVVDTPLYVGMFAPPDGFDRTLRISGVKVHATTSADIEVTPLLCRRGTVGVTSKPDEFCSDLVNPEGERMTTGDSIVLKLESAEPAIAVVDQIKVAYREDVRWDTQPAGAQQAIVTFAGRPEIEDGTATQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6K7</accession>
    <name>A0A0Q8V6K7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">2Fe-2S ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_15950</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893576.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50109">
        <property type="protein sequence ID" value="KRC50109"/>
        <property type="gene ID" value="ASE19_15950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1681886at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rieske" evidence="4">
        <location>
            <begin position="4"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="111" mass="11945" checksum="7905EE834198DA1C" modified="2016-01-20" version="1">MSFERVASLSDVPTYEALAVTVDRYDVAIARDGDEVFALQDLCSHASVSLSEGEVADCTIECWLHGSTFDLRTGKPTTFPATEPVATFPVEVRDGDIYVDVTTTLNGVTPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6L1</accession>
    <name>A0A0Q8V6L1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11775</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894991.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53061">
        <property type="protein sequence ID" value="KRC53061"/>
        <property type="gene ID" value="ASE19_11775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1430325at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="265"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="328" mass="36069" checksum="DEFF26FBF886C1FB" modified="2016-01-20" version="1">MPSTTRTLTPSQPAASPTPTPELRSQFAGHPVPVQAGTTLRRILFATLDRADRVPADKREVWDQFVRVLDQNRNDPRSTARCAVLANLVALIVFDEPTDYAATVELATQLGQPRLARLQHRASIALERDASMPWTTTAVRRLVTWDLASRLGGDTTASDNDEDVATTCAVIAQNLVFEDLDPERAAAPITSVAELHRLIDHGTIADWRSHLGPIAASPWGPYADLLLDLGRASDRPSALAAIASSIEQCQEWCRERERDQVAREIRHLVALSGASQREFASRIGTSPSRLSTYVRGTVTPSAAMLLRIQRASRMLQRQSTRTVLEASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6N1</accession>
    <name>A0A0Q8V6N1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH_30 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893609.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50141">
        <property type="protein sequence ID" value="KRC50141"/>
        <property type="gene ID" value="ASE19_16140"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_30" evidence="1">
        <location>
            <begin position="300"/>
            <end position="355"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="369" mass="39020" checksum="704045567CA18F1F" modified="2016-01-20" version="1">MGISIEQRMRPYLDAMWADRDEIVRRVSRAVTTGVPSYATTPSSEVWIGMTRILERAAHGNPFGAPTEEDRLAALGTGAQGAGAGIEVGDLVTAVLLGAREVEDDVLDRAARAGTGADALLDASRRARVWAEQVAVWAAEGLLGAAVDDVEEHVRHDRLLTELAAGDVDAARATAIRLGLDPAARWWAVVPLPEATPALRLANHGAVWGTTSGLLPRPPVVPGELVAGVGGPALLDDLPGALREATRAARVALQFDQRGSATLAGLGLLVPLHEDPALAARLHARWLAPLATEPRHELEPTLRAWLARDGQVDAVARDLGVHANTVRNRLARVGRLLGDDWRTPQGRAELWAALQNAGGQLVGTSTSEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6P3</accession>
    <name>A0A0Q8V6P3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16240</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893625.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50157">
        <property type="protein sequence ID" value="KRC50157"/>
        <property type="gene ID" value="ASE19_16240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1096413at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042171">
        <property type="entry name" value="Acyl-CoA_hotdog"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="280" mass="29649" checksum="0DF4E76DF62918E4" modified="2016-01-20" version="1">MNENTFQFCWFRRNGDLFEPQPLAQSLWRADQMHGVAVSGLLARALEAVVADAGRTELVPARYHVDLFRPARMAPTSARATIVKEGPRLTLVDAVVEQEGEVMARASATFLLPSENASGAVWSSPEPRPTPPPREIAPDDVEHHVPIFASDAPWSDNFGEHQNGGRHATWHIAVPIVLGEACTPFQAVASIADATSMVTNWGAGGVEYINTDISLALTRAATGISIGLRATDHLASAGIAVGTAEVFDRDGSFGTATVTSLANSRRTVDLSGGVGVEGSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Q1</accession>
    <name>A0A0Q8V6Q1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10495</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894764.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52831">
        <property type="protein sequence ID" value="KRC52831"/>
        <property type="gene ID" value="ASE19_10495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1930290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="64"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="99"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="206"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="261"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="295"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="318"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="157"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="163"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="345" mass="36810" checksum="B2F027033FC3E67D" modified="2016-01-20" version="1">MNQPQPRPPQATLAGVLIIGGSIVLILSAWQRISTLHTLEVQQGLERWLSANNLDMSVDTLVGVLRVLCLTGAGAAAAAAILGYQVFQRSPSARIVLSVLAPLLLLAALATEVVIAIMAVFGIALLWAQPTRDWYAGRPWAQRYDARRAARVADLRSGSPTLPPAPGQQPSQPPAPGQAPQLPPMAPVPGFRLPDRRLAVVRRPGALVAACLLTWVLSTVVSVGLVLVGVVLAANRDEFFADLKDQQPDLVASSELTADTLVVYFSVMVVALVLWALFAIVLAVVAFLGQNWARITLAVSGVCAALLSLVMALSGPPLVVVTLTLATGTWLLLRPEVSQWYRTRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V719</accession>
    <name>A0A0Q8V719_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Probable 2-phosphosulfolactate phosphatase</fullName>
            <ecNumber evidence="3">3.1.3.71</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_17140</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(2R)-O-phospho-3-sulfolactate + H2O = (2R)-3-sulfolactate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:23416"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15597"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58738"/>
            <dbReference type="EC" id="3.1.3.71"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ComB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.71" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893786.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50317">
        <property type="protein sequence ID" value="KRC50317"/>
        <property type="gene ID" value="ASE19_17140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1617556at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050532">
        <property type="term" value="F:2-phosphosulfolactate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005238">
        <property type="entry name" value="ComB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036702">
        <property type="entry name" value="ComB-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04029">
        <property type="entry name" value="2-ph_phosp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142823">
        <property type="entry name" value="SSF142823"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00033711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC50317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="283" mass="29091" checksum="A7B611DC0B51575D" modified="2016-01-20" version="1">MAVAPTALDVDPAHTQHASRIRLEWGPTGGAAICAGPPAADIAVVVDVLSFTTTLSIATRRGTRVHPFPWKDERAAAYAAERRAVLAVGRFEAQHLDDPPPSLSPATLLASRYVARLVLPSPNGSTICAALRDSPTAPTVVGASLRNRTAVADWLAPRVAAGATVAVVPAGERWTDGSLRPAVEDLWGAGAVLDRLLDRLLGVLDGSDGARGPVAISAEVRHAVAAYRHVADQLAHELRACASGQELVAIGFGADVAAAAELDADEVVPVLTDDGFAAAPAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7B5</accession>
    <name>A0A0Q8V7B5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13345</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53333">
        <property type="protein sequence ID" value="KRC53333"/>
        <property type="gene ID" value="ASE19_13345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1835483at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006470">
        <property type="term" value="P:protein dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00143">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015655">
        <property type="entry name" value="PP2C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13832">
        <property type="entry name" value="PTHR13832"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="338"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="domain" description="PPM-type phosphatase" evidence="2">
        <location>
            <begin position="23"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="441" mass="47186" checksum="8AB91508ED9D2F5A" modified="2016-01-20" version="1">MTDPTDDTVDRPVRAPKPPLRLDFYAVSDVGRVRKDNQDSGYAGPWLLAVCDGVGGAARGDIASGTAVNELRSLDVPPGSADALDRVSDGIHEAHVAIGAQVDQDPALNGTSTTATVALFDGSRLALGHVGDSRAYLLRDGELSQLTSDHTFVQSLIDEGRITEEEARVHPHRNLILKALDGLHDVEPDLFALELVAGDRLFLCSDGACGVLVDARIAEILTGASPEFSSIEMVRASLEAGSSDNVTCVVADVAEATPDDVAPEPMVVGAAADLRQRRPRALFRGHRSGDTGELEPVTAEIPDIPEGVEAIAADPRYDPEAMRYAPQPPPRFIWPRRLLALAVAVGLVWVVLGTAWWWSQRQYYVGEDAGKVVIFRGVEVPGLSKVFEVSDVALADLPEDKQSIVEDGISYGNDYDAAREKVEQLATDAQSGTATDLEPID</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7I2</accession>
    <name>A0A0Q8V7I2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Thiolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_13295</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895786.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53324">
        <property type="protein sequence ID" value="KRC53324"/>
        <property type="gene ID" value="ASE19_13295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="311458at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="2">
        <location>
            <begin position="4"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="3">
        <location>
            <begin position="270"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="413" mass="42786" checksum="48EAC3293F494965" modified="2016-01-20" version="1">MTDVYIAGIAMTVFGRHPARSLEDLAGEALRGALSDAGCDVKDLGAAYYAGVTNGPLQGQLSIPGQVVLGKVGVEGIPVFNVENACASGSTAVHLAVQGLRAGSTDVALALGAEKMNVADKARTLALFEGGWDVSRADENYEALVRLGEGVTVPEGSESDRPYSRFMAVYAALARHHMATWGTTARQIAAVSAKNHQHSVHNPLSQFRTPYTVEEVLAAPPITHPLTLPMCAPTSDGAAAVVLCTEEGLRRIGADRSRAVRVAASVVRSFTHRTADEFEQGVGRRAAQQAYADAGLAPSDIDVAEVHDASAVGEIIQAENLGLVPDGMGGPAAERGDFSLGGRIPINTSGGLESKGHPLGATGIGQLFELTTQLRGEAGPRQVDGARCAIQENGGGLVGIEEAAVAVHILTHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7K4</accession>
    <name>A0A0Q8V7K4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13795</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897089.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53413">
        <property type="protein sequence ID" value="KRC53413"/>
        <property type="gene ID" value="ASE19_13795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="616258at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18808">
        <property type="entry name" value="SF1_C_Upf1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045055">
        <property type="entry name" value="DNA2/NAM7-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041679">
        <property type="entry name" value="DNA2/NAM7-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041677">
        <property type="entry name" value="DNA2/NAM7_AAA_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025103">
        <property type="entry name" value="DUF4011"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10887">
        <property type="entry name" value="PTHR10887"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13086">
        <property type="entry name" value="AAA_11"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13087">
        <property type="entry name" value="AAA_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13195">
        <property type="entry name" value="DUF4011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_11" evidence="1">
        <location>
            <begin position="281"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_11" evidence="1">
        <location>
            <begin position="826"/>
            <end position="870"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_12" evidence="2">
        <location>
            <begin position="967"/>
            <end position="1087"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1336" mass="146233" checksum="238A845C8FB1F896" modified="2016-01-20" version="1">METTQGLSRKQLVAAAVERWAKDLVDTGKRNPLLYYRPLQAGTLSLDHADAAALTAFLAGSQIKLSALFPTLTASADSLRRIRTIRKKVLTLEEERGIQTGYLAIGMATWTEEGAAATERAPAAPILLREIWIKPRSASESDFDLTLAEEAEYNPVLLHYLHERFGSAVDLSGLPEDPDEKSWDGIADSFAALESACAQVPGFATERTLAVGSFAYQKLPMVNDLKADIELLLESDVIAALAGDAEAQAALRGNPGAADSLEPSRPDHTPPADEFLVLDADSSQNYAINAAFGGSHVVVKGPPGTGKSQTITNLIAGLMARGKRVLFVAEKRAAIDAVLGRLGGADLDTWVMDLHDGLSNRRRVAQQLSETLERASRTGVPDVAALHRELVASRDRLINHSDMMHRPREPWGFSVYDLQALRLQVGDIKPSFRFRGARLTAATPEMVENGIAVLTEYAELDGLKAAEAGAWSGAQVDTADQARHAIEIVRQLRDHTVPVAGTKLNSLVETLGLRRPTSVDQWGGLLDLVNQVAALRQHLAEGAFGEGQEALLAATATRRWRKERGVTMPWGERRRAVKAAKVLAVGGKPSKTDLHAKLAHAIELTAAWRSASVDGGTPRLPADLAGTHQQLEQLTTELRGLGAFIASGDLGALDPTTSLPQRLDALVRDQTQLSKLPRLRELHRKISDLGLDAFAGECRSREIQPHAVRPLLESAWLDSILEEIALTDPSYGAFQGTTLNRAVDTFQTADTQHIQSAGARVQRKAAEALYAALDAHPEQTLLIRKQANLKRRHMPMRELLEQAGDVLLAAKPCWAMSPLVVSQVLPMRRMFDVVIFDEASQIPPADAIPSIARGHKLVVAGDERQLPPTAFFGSTVDDGDEDEDTENVTLTSGFESILDALAPLISIRNLQWHYRSRDEKLIAFSNVHIYDSSLTTFPGAQQDGVLKHVHVPWTPGAGGVAGSTSAEVEKVVDLIIDHAENRPEESLGVIAMGIKHADRIDAAVRERLRDRSDLESFFSEAQEERFFVKNLERVQGDERDAIIMSVGYGKSADGRMLYRFGPINTQGGERRLNVAVSRAKRRMTLVSSFASADLDPNKLNARGAELLGAYVSFMESGGTDLGSIAIPPPRLNAFEQDIRDRLTQAGLTLTPQFGVSGYRIDFVASYPEKPGQYVLAIEADGASYHSSATARDRDRLRQEHLERLGWRFHRIWSTDWFRNPQAEVDRVLQAFNAAVEAADRGEVTGRRTHAIAPPAAVEPATVQPTRTLPKPKIWFGQPITTYSRSDLVAVVRWIQSDGLLRTEEDLIRDAMEELGWRRRGSRIDAGLRDAIDAARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V817</accession>
    <name>A0A0Q8V817_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase</fullName>
            <ecNumber evidence="2">4.2.1.17</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15715</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.17" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893535.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50066">
        <property type="protein sequence ID" value="KRC50066"/>
        <property type="gene ID" value="ASE19_15715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004300">
        <property type="term" value="F:enoyl-CoA hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="27998" checksum="3DB039A9B0CDFC60" modified="2016-01-20" version="1">MSDCLVEQDGHKLVVTMNRPERRNALSSEMLRIMEDAWDRVNEDPEIRVCILTGAGGYFCAGMDLQKADEKPPSESFESGEYDPTVIKGLLKGFRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGVAEARWSLYPMGGSAVRLPRQIPYTVAAELLLTGRTLLAPEAKELGLIGHVVPDGQALAKAHQLADMVAANGPLAVQAILRTMRDSEGKHEEDCWADDAKVGAAVFSSADAKEGPRAFLEKRAPQFQGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V992</accession>
    <name>A0A0Q8V992_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13025</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53668">
        <property type="protein sequence ID" value="KRC53668"/>
        <property type="gene ID" value="ASE19_13025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="16835" checksum="A0AD63D0A4CAF4EC" modified="2016-01-20" version="1">MGGEVSVHMKAPVEQVWALVSDVTRIGEFSPETFEAVWTHGATGPAVGARFKGHVKRNGVGPTYWTPCTVTKCVPDEVFEFGVGLDDHPINTWGYRMQSENGGTRVTEYFRLTPAWYIRGYWLALGRLRGRTNERGMRTTLERMKAVVEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9M4</accession>
    <name>A0A0Q8V9M4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alkanesulfonate monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894522.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52585">
        <property type="protein sequence ID" value="KRC52585"/>
        <property type="gene ID" value="ASE19_09065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="919913at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="28"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="381" mass="41257" checksum="80352E87517CFB22" modified="2016-01-20" version="1">MTHDARYHDVEILGMIGTADASEIRPGNAAVVDPDYTARFARAHEDGGFDRVLIGYGSGWAEGSQVAAYAAAHTERLGLLVAHRPGVVHPTLAARTFTTLDQFSKGRVALNIVTGSSDVEQRREGDYLPHDERYDRTDEYLQVLRAAWDTKGPRDFEGRYYRFEGATPQVFPHHDRHLELFFGGSSPAAYVVGGRHADTYMLWGEPLKETGEQVATVAASAAAAGRPERPRISVSFRPILGATDEAAWERAHGILDTINGAVGAAFKQKVGQMHPQGRAPENAGSQRLLAVAEKGELHDRCLWTPTAQAVGGGGNSTALVGSPETVAAAILDYVEIGVDTVLIRGYDPLQDAIDYGRDLLPLVRQELAHRAATRRTETAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9S6</accession>
    <name>A0A0Q8V9S6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CobW C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895517.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54085">
        <property type="protein sequence ID" value="KRC54085"/>
        <property type="gene ID" value="ASE19_08460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1267701at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011629">
        <property type="entry name" value="Cbl_biosynth_CobW-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07683">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00833">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CobW C-terminal" evidence="1">
        <location>
            <begin position="245"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="362" mass="38549" checksum="48C593C945D76A9F" modified="2016-01-20" version="1">MTSPIHSVRPVPVVVLSGADPDAMATTLVGLQFDLPEAVAVRHHIDVERGVLTRTVSDMGGEVERHEVLLEHACVTCALREDVVPTLERLARDGRWRTIVAHLPVGAEAAQLCTALSRDIRLARVLRVSSVVAAVSARQPVRDLLGDDLLAERGHHSALDDRRGVGEVLAAIIEHADLVTFDDVPDPVAHGLVGALARPSVPVATGGHGLPGSDLTGRLHAAAHTAAWTSPARSVALPPVRAEGVWRLDLQSLRPFDPARLLSSIEQLGAGAHRSRGCFWLPTRPGRVLEWDGAGGQLSIGDRGPWGERTPFTRIVLTGVGAAPAHLRPAFDGLLAAGPERVVRRVAEDGFEPWLGEIRSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Y7</accession>
    <name>A0A0Q8V9Y7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glycosyl transferase family 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_07440</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895340.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53908">
        <property type="protein sequence ID" value="KRC53908"/>
        <property type="gene ID" value="ASE19_07440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1591999at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044249">
        <property type="term" value="P:cellular biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901576">
        <property type="term" value="P:organic substance biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13579">
        <property type="entry name" value="Glyco_trans_4_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="4">
        <location>
            <begin position="14"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="3">
        <location>
            <begin position="205"/>
            <end position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13579"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="43381" checksum="83F785D1651596D3" modified="2016-01-20" version="1">MRILVHDHSGHPFQAELSRELARRGHDVTHSYVEGYVSGKGKLEAAPGETITFEGIGGAKVIDNQAMLQRLVRETARGFELVRHVRKVNPDIALMSNVQIPTLVIFAFFMAVLRRPWVLWHQDVYAVAIRSFAGKKLPKGFALVARAFEVAERWCSRRAAAIVVIAPSFVPVHEKWGTADKVTVIPNWAPLDEIRPTPRKNEWAAENGLDDVQTLVYSGTLGLKHNPALLVRLAKATIDAGRPVRLVVVNSGPAVDVLSAEAQRLGVEITLLPFQPYERLPEVLGTGDLLVVLLEQEAGAFSVPSKTLSYLCAGRPVLGLMPGENLASALVTRAGGLVLPPTDASMPEAAAWVAKVLTDDDLRQELGEASRDLAEQEFALQRLASRFEQLLEKGKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA95</accession>
    <name>A0A0Q8VA95_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">3-hydroxyisobutyryl-CoA hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08875</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895586.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54154">
        <property type="protein sequence ID" value="KRC54154"/>
        <property type="gene ID" value="ASE19_08875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1238555at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003860">
        <property type="term" value="F:3-hydroxyisobutyryl-CoA hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045004">
        <property type="entry name" value="ECH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032259">
        <property type="entry name" value="HIBYL-CoA-H"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43176">
        <property type="entry name" value="PTHR43176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16113">
        <property type="entry name" value="ECH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ECH_2" evidence="2">
        <location>
            <begin position="16"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="346" mass="36722" checksum="84055A4ED728F5D3" modified="2016-01-20" version="1">MTVEPPVLLRRDGHAAHIVLNRPRAINALTHEMVGIISAALEEWRYDDSVRTVVLTGAGERGLCAGGDIVAMWRDAKAGGTESAGFWADEYRLNATIAAYPKAYVAIMDGIVLGGGIGLSAHAPQRVVTERSSIGMPETGIGFLPDVGGTWLLSHAPGETGTHLGLTAGSIGAGDAIATGFADHYVPTDRIPGLLADLAHRDADEALADAELPPPPSPLTEARSWLDEAYAGDDVLTILDRLRALGTEEATRAAATIEAKSPTSVRVTLRALREAAGMAALTEALDLEYRLALRFHASHDFVEGVRAQVVDKDRNPQWRPPHVREVDDATVAAYFAPLGEPELGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAA0</accession>
    <name>A0A0Q8VAA0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cobalamin biosynthesis protein CobW</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08465</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SIMIBI class G3E GTPase family. CobW subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895518.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54086">
        <property type="protein sequence ID" value="KRC54086"/>
        <property type="gene ID" value="ASE19_08465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011629">
        <property type="entry name" value="Cbl_biosynth_CobW-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036627">
        <property type="entry name" value="CobW-likC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003495">
        <property type="entry name" value="CobW/HypB/UreG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02492">
        <property type="entry name" value="cobW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07683">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00833">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CobW C-terminal" evidence="2">
        <location>
            <begin position="223"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="314" mass="32417" checksum="0EE0FEDF730230F1" modified="2016-01-20" version="1">MSRVPVVALTGHLGAGKTTLLNHLLRQPGARVGVVVNDFGAVNVDAALVSGQVDELASIAGGCLCCLEDAGGLDDALAKLAEPRRGLDVIVVEASGIAEPGALAQMIVASSAPRIRPGGVVDVVDALEYFDTVDGGGLPPARFAVATLVVLNKCDLVTEDVLERIEARVRELNPHVHVVRTTGGEVDPALVYDVASTDEPEDELPLAALLRAERPAAQGHTHASSVTVTTTEPVDPAALEALLAVPPPGAYRIKGTVAVRSGSRVRGQVVHVVGRQAWVTSCPPPAESALVAIGLDLDPEVVRPLLAAGLRPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAA1</accession>
    <name>A0A0Q8VAA1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Acetyl-CoA acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_08675</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895552.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54120">
        <property type="protein sequence ID" value="KRC54120"/>
        <property type="gene ID" value="ASE19_08675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="311458at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="2">
        <location>
            <begin position="10"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="3">
        <location>
            <begin position="267"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="41709" checksum="55728C6A28970E28" modified="2016-01-20" version="1">MASKGIKDAVAIVGMGCTRFGERWESSTDDLLLEAVGEALGSAGVERDDVDAYWLGTLGSGQSGLTLSRPLGIDHKPVTRVENYCATGSESFRNACYAVASGAYDRVMAVGVEKLKDSGFSGLLRADPPSDGTAAELSLTAPAAFSLLDPAYTAKYGVDPAAMREAMTHVAWKNHVNGARNVKAQFRKEVSRETIEGAPKVAGRLGIFDCSGVSDGAAAALVVPAEQAYDYTDRPIFVKALSLAAGPMRGGLDPSYDFTTFPEVVHSATDAYAQAGITDPRAEISLAEVHDCFTPTEIVLMEDLGFTARGQAWKDVLAGEFDLGGRLPVNVDGGLKSFGHPVGASGLRMLYEAWLQLRGEAGERQLADPRLALTHNLGGRPGGCVSFVSVVGSERG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAA2</accession>
    <name>A0A0Q8VAA2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08205</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895475.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54043">
        <property type="protein sequence ID" value="KRC54043"/>
        <property type="gene ID" value="ASE19_08205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="154149at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="424"/>
            <end position="444"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="450" mass="47772" checksum="EDB52B988FD68D3E" modified="2016-01-20" version="1">MSGEQLRAELERIADRAPAVEVDAGLFDRGRRATRRARVLTAAAVVGCLAVLTTVAVPLLRPDPPPFADSDVIGVPNHLYAVPDHVADEPETGLRIGRGAAAFVTENGVPVVVDAQDGAYHVLRLRGLLDDSPGGGYRFHSAPPLALSPDGTRIAWGILIDGTGGDPYSGIRVADLTTGEVLEIVPTAKDRNVLVGQLHWSADGRWLVWGGARIVEWTGGGSYSTSGQFGGVVAADGRTSPSYELPEAEVVTDDTVVSGNVVPDVLVSDEGEFAAVGGNGLWRDGRNTRFDLPGDAAIYGAWFRGDQVVGLRRAIDGAEGRAYLVDLPGPENTMVRTDLSDPRRIGQLDADTQVLATEALDEDGSPDPQVTLVRTGRPGGTETPVMALDRGVLGLTLATDLMPPDHPTVERPAPDWPWSPQRRVAVVAVPVLALLALTGATWLLRRRFSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAF4</accession>
    <name>A0A0Q8VAF4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08515</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54091">
        <property type="protein sequence ID" value="KRC54091"/>
        <property type="gene ID" value="ASE19_08515"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="2"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="27766" checksum="6F7E9BD287AE429A" modified="2016-01-20" version="1">MLLLHGMGCGPWVWRDVTAALPAHLTPVAATIAGHRGGTRLERRADRRAPDQMLDDLERQLDDLGLARVHVVGNSLGGWLALRLAERGRALSALCLAPAGGWRPGSLGERMVVSRFVVGHRFARRVARSPRLLRSAGFRRTMMAPVAHQPARIPYEDAVTFVSDLADCQALRAAIGHPEARELDAILRLGAPTTIAWSGDDKVLSGPWAREGFAHLGADEITVPGVGHLPMLDDPRGVAALVAARVSGSLPPGRTASRAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBQ8</accession>
    <name>A0A0Q8VBQ8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PAS_4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04265</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54702">
        <property type="protein sequence ID" value="KRC54702"/>
        <property type="gene ID" value="ASE19_04265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAS_4" evidence="1">
        <location>
            <begin position="24"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="152" mass="16729" checksum="EE0F916DF71EE24B" modified="2016-01-20" version="1">MVEFGYKHQLSEADMSDVDFEQFFNAVPANYLVYDLDWNIVAVTDATLGDTLTRSEVIGRNQFDVFPDNPDAPQGSGRTAMEDALQRVVDEGVGHEMPVTRYDIADASGAFQTRYFKPVNEPVFDSAGIVTHVIHGVVDVTETHDPSGFSPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCA5</accession>
    <name>A0A0Q8VCA5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04785</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894289.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54792">
        <property type="protein sequence ID" value="KRC54792"/>
        <property type="gene ID" value="ASE19_04785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1928636at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="129" mass="13488" checksum="B2960883DDA12A6A" modified="2016-01-20" version="1">MHATTTDLPVKMNALGAVARHQGEFGTAYGTLAAEHLVLATGVDVAPLLAGLDDGLCFAAHWGYVVRGVVVVTYGDGSTERCTAGEVVHWPAGHTVRVEEEAELVMFSPAAEHLAVMNHMLGVLATIPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCD7</accession>
    <name>A0A0Q8VCD7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PPM-type phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04610</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894319.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54763">
        <property type="protein sequence ID" value="KRC54763"/>
        <property type="gene ID" value="ASE19_04610"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006470">
        <property type="term" value="P:protein dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00143">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015655">
        <property type="entry name" value="PP2C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13832">
        <property type="entry name" value="PTHR13832"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="2">
        <location>
            <begin position="5"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="269" mass="27778" checksum="E296E0CC635316DF" modified="2016-01-20" version="1">MLQFRFAASSETGPVREHNEDSGFAGPYLLCVADGVGGAAAGEIASATTTYVVSARSLAHPGFEPERLLRAAVAEAHTQLVAGVAADPARRGMATTLTAVLTDGVHTSLAQVGDSRAYLLRDGRLVQLSHDQTLVQSLVDAGRLTPAEAAASPYRNVVLQAVDGEHEPEPVLQPLDLRPGDRLLLCSDGMSDVLSPATVHLLLGIDSLGAAAERLVRAAIDSGTRDNVTVVVADVVDAPAVVGNGRVLGAGIDLAHVVDPVAVRPLRSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCK6</accession>
    <name>A0A0Q8VCK6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glycos_transf_1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05015</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54827">
        <property type="protein sequence ID" value="KRC54827"/>
        <property type="gene ID" value="ASE19_05015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="635734at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="226"/>
            <end position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="402" mass="43912" checksum="FA670C2F8BFD4377" modified="2016-01-20" version="1">MGAMSRRTPTRLRAAFTRSLRDDDPRPRVVFLVMGIHGRSGVSRAVLNIAGALVSTHRVEIISVYGGGSHAFAVDRRIRVDSLIPVAFRRRDALPRKQRALAFQPSAVVKDKYLNALTDAALTTALGRLRPGDVLVSTRPVLHVVGVELTDPGVVRIGWDHFNYPARQKPGQGSRKIARAMPGLAAFVVLTEADQRDYRGDFAGARIDVIRNAIPWRGPAERPVRDSNTVVAAGRLAPVKGFDRLIAAWASIADEFPDWRCRILGQGQLEDELQRHIDASGSTTVSLAGNSDDMPGELGRAEVFAMSSHHEGLPMTIIEALSQGTPVVTFDCPRGPGELVDEGNGRLVPDGDVPALAAALRELMSSKELRDRLGEQALRDSRQYDIDHVADVWRKLIADLTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCP1</accession>
    <name>A0A0Q8VCP1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_05270</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NlpA lipoprotein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894211.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54870">
        <property type="protein sequence ID" value="KRC54870"/>
        <property type="gene ID" value="ASE19_05270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1230456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004872">
        <property type="entry name" value="Lipoprotein_NlpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30429">
        <property type="entry name" value="PTHR30429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03180">
        <property type="entry name" value="Lipoprotein_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="310" mass="33661" checksum="F33BDC68C0BA8FC1" modified="2016-01-20" version="1">MSTTQQPGKREADAGRDAIDLGGSGRKWLWPVAAGVVVLALALFLVLKLTGSDEKAVEGSHFGNDFQIAYQASSASEKAFLDYLNEEIAPDHGVTIKGVGIEDGNQLDQATADGQYIANIYQHKHWLKQVTDSTGMDLTALGEVFQWSYSVYSTKYASLDELPKGATVALLNDPANTAQALWILERAGKLTFKDGVDPWAATEQDIADNIGGYKFTYIEYGAGPRTLDSVDAVIDYNMSFVDAGTPDKYRIFEPDAPKEFAGQLVVGTAYLDDPQVAKLKEVFFDERVQAYLAENTDPNLSGQLAPVSAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD64</accession>
    <name>A0A0Q8VD64_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Mannose-6-phosphate isomerase</fullName>
            <ecNumber evidence="3">5.3.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_09460</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-mannose 6-phosphate = D-fructose 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:12356"/>
            <dbReference type="ChEBI" id="CHEBI:58735"/>
            <dbReference type="ChEBI" id="CHEBI:61527"/>
            <dbReference type="EC" id="5.3.1.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the mannose-6-phosphate isomerase type 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.8" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894591.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52653">
        <property type="protein sequence ID" value="KRC52653"/>
        <property type="gene ID" value="ASE19_09460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="645703at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004476">
        <property type="term" value="F:mannose-6-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009298">
        <property type="term" value="P:GDP-mannose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001250">
        <property type="entry name" value="Man6P_Isoase-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016305">
        <property type="entry name" value="Mannose-6-P_Isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10309">
        <property type="entry name" value="PTHR10309"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01238">
        <property type="entry name" value="PMI_typeI"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001480">
        <property type="entry name" value="Mannose-6-phosphate_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00714">
        <property type="entry name" value="MAN6PISMRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00218">
        <property type="entry name" value="manA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="active site" evidence="4">
        <location>
            <position position="263"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="244"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR001480-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001480-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="393" mass="41400" checksum="E82DA10DC19AFC40" modified="2016-01-20" version="1">MLALTCPTQSYDWGSTHAIPGFQRQEADGRRVAEVWIGTHPLGTARVSDASGQEKLLTDVAGELGFMLKVLAAERPLSIQVHPDATRAAAGFAEEEAAGVALDAPDRVFKDPFPKPEMVYALSTFDTLVGLRRTSEIMRILDALDHPLTDQLMAGLVETTGFTGIVRLIEGLIASPPSPEAVTEVVAGCQKALDAGRDVKRAFETAVELAEACPGDVGVIVSLLLNRLTLQPGEAAYLATGIIHAHLRGLCLEVMVSSDNVLRAGLTTKHIDAPGLVRCLEEGTSRAARVEPIVFNYSTDVFAPCDDFALSVTQSSPADPAGVALPASGPRLLVCTGGEVALANRRDEVLRLGRGDVAFADDSDGELRVAGTGEIAQAFVPGAGGRGQLFDLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD69</accession>
    <name>A0A0Q8VD69_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PG_binding_4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06105</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55014">
        <property type="protein sequence ID" value="KRC55014"/>
        <property type="gene ID" value="ASE19_06105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="967747at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022029">
        <property type="entry name" value="PG-bd_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007391">
        <property type="entry name" value="Vancomycin_resist_VanW"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12229">
        <property type="entry name" value="PG_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04294">
        <property type="entry name" value="VanW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="22"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="domain" description="PG_binding_4" evidence="2">
        <location>
            <begin position="103"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="598" mass="63985" checksum="BDD3D8CEE609E773" modified="2016-01-20" version="1">MWEDVAQDTGNGSRRERLGGRAVVAVVVVLLLLVGGGYAAAHAVAGDKVPRGTRISGVDVGGLTRDAAIDKLDRTFGPRGDVPIAITVEHRLAGDDDTARARLEPADIGLAVDYDASLDAAGAESSWSPGRQWSYFTGGDDVDAVVRFDDALFRAKLADAARGLGTPPKDGQVKLTADGVQTVAPVAGEAIDADAARDAITDAFLAGEESVDLQVTVAQPDIDADDVSAAVEAFADPAMSGPVTLEFGENEIRLPPRRFAAALSMAPQDGELVPVVDEKILTQLVASATADGKPVDATVRIVKGRPRIVPAKPGVEFDPAEVVQVFEGLLTKTGAERSGAVDAQVTDAEFTTKDAKALGIVEKVSEFSTSYPHADYRNTNIGRAAELVDGTILKPGEEFSLNGIVGERTRENGFTEGYIISNGILKLDLGGGVSQMATTTFNAMFFAGLEDIQHKPHSFYIDRYPVGREATVAWPTVDLRFRNDTDHGILIHSWVEPSDYSRQGKVTVQMWSTKVWDIDSRTSDRYAYVAPATRTLTTADCEPHTGSSGFKVDVTRIFRKHGESAIDHTEKFHTDYTPADTVVCKKPGPPPKQDPEQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD74</accession>
    <name>A0A0Q8VD74_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894610.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52672">
        <property type="protein sequence ID" value="KRC52672"/>
        <property type="gene ID" value="ASE19_09565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1800202at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359922" evidence="1">
        <location>
            <begin position="24"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="200" mass="22355" checksum="74F5B4AFB87DCC33" modified="2016-01-20" version="1">MPRPVLVVLVAATVLLALVPAAWSRTNPVEDYATYEPATACRRVAQPGTVLLGRWIVRGYGGRFGSTVRPCGGSRSEHHEGRAFDWTVDVRRPADRARVRRLFADLFATDAAGNRHARARRMGIMYVIWNDRIWSAWNGFRAEPYLSSSCPTLRRCSRTLRHQDHLHVSISRAGAAGLTSWYVPRMEARTGPLGPRICCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDA0</accession>
    <name>A0A0Q8VDA0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">50S ribosomal protein L30</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmD</name>
        <name evidence="7" type="ORF">ASE19_06495</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2 5">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL30 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894483.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55076">
        <property type="protein sequence ID" value="KRC55076"/>
        <property type="gene ID" value="ASE19_06495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2084745at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01658">
        <property type="entry name" value="Ribosomal_L30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1390.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01371_B">
        <property type="entry name" value="Ribosomal_L30_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036919">
        <property type="entry name" value="L30_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005996">
        <property type="entry name" value="Ribosomal_L30_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016082">
        <property type="entry name" value="Ribosomal_L30_ferredoxin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00327">
        <property type="entry name" value="Ribosomal_L30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002211">
        <property type="entry name" value="Ribosomal_L30_bac-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55129">
        <property type="entry name" value="SSF55129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01308">
        <property type="entry name" value="rpmD_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 7" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Ribosomal_L30" evidence="6">
        <location>
            <begin position="4"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="62" mass="6949" checksum="710CE0A4009931C7" modified="2016-01-20" version="1">MAQLKVQQTKSKIGTKANQRETLRTLGLKRIGDVVIKEDRPEIRGMVHTVRHLVTVEVVGGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDB2</accession>
    <name>A0A0Q8VDB2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06800</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895232.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53801">
        <property type="protein sequence ID" value="KRC53801"/>
        <property type="gene ID" value="ASE19_06800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275789at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="28118" checksum="9BFE6B16485E6287" modified="2016-01-20" version="1">MADFEYTVSDHIATIRINRPEKKNSFTLEIVDQWADALRSAESDPDVRVVVLTGSGDSFCTGVDLSIFGERERTPLAEKDMLAKRVHHVAHAAEALSKPYLAAINGFAIGAGMDMALMADIRLAASSARMSEGYIRAGLVPGDGGCFYLPRVAGLGTALRLLWTGEFIDADRALALGIVDEVCPDDQLDEQVRQLAVTLAAQPPVAVQMIKRAVYSGLRSDLRTALDLISSHFAVVTSTDDANEAMSAFRDRRQGTFTGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDE8</accession>
    <name>A0A0Q8VDE8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_04380</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55115">
        <property type="protein sequence ID" value="KRC55115"/>
        <property type="gene ID" value="ASE19_04380"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="54"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="83"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="139"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="170"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="230"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="255"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="312"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="344"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="379"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="1"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="405" mass="41324" checksum="C160C46CD5006926" modified="2016-01-20" version="1">MYGLPTSSVTSRPITAVALIALSTLLSMSAWFSATFVVPQLKDDWGLGAGGTSALTIAVQLGFVVGALVSAATGVVDAIPTRTLISVGGLGAGLCNAGLLICDGLASALPLRVATGMFLAAVYPPAVKEVSTWFLRGRGKALSVMIGALTLGSALPHLVRATGGGVDWRLVIGTTSVLAIAGGLVVLLIRGSGPYPFPRRPFSLGGGLRSIRNRDVALANVGYVGHMWELYAMWAFVGSFIVALPAVASRSDAESFGALLAFICIGVGAAGCLLGGVMGDRWGRPRAALISLVCSGGSALLLAGTYTTAPLGLVLGVCAFWGFWVIADSAQFSAMVAESADPDYVGGAISLQLALGYITTMVTLAVIPQLVDHFSWRTALMVLAVGPAVGAVAMVVADRARSARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDF0</accession>
    <name>A0A0Q8VDF0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06255</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894449.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55039">
        <property type="protein sequence ID" value="KRC55039"/>
        <property type="gene ID" value="ASE19_06255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2086547at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359931" evidence="2">
        <location>
            <begin position="28"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="199" mass="20367" checksum="C6B5DE23585F782C" modified="2016-01-20" version="1">MKATIVTATAVVVLVTGCGTTSTTAGDEPSTAPPSSPSLSGSVSGSVSASAAAQPTEEDLALARALEALSKDPGPETLAQVPFAPEVALGLARRLEPPRARDQLAARAGWSIDAAQFRGYVGPFNALEHLDGARVDVEVGPQPHCAGPPVPAPPGLESLHRVVLQPAAGTIDSCLDWFSVDLFVDDGTVVAVTLDLWEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDM0</accession>
    <name>A0A0Q8VDM0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5 family acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04810</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894415.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55126">
        <property type="protein sequence ID" value="KRC55126"/>
        <property type="gene ID" value="ASE19_04810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2055010at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="17998" checksum="E425AE99532300E4" modified="2016-01-20" version="1">MPAGVRHARPEDVPDVLRLIRGLADYEREPDAVETTEDDLQRWVFGDDPVANVLVAESAPGGPVVGMALWFRTYSTWTGVPGIYLEDLYVDPQARGTGLGKALLAALARIAVDRGYRRVEWAVLDWNTPSIEFYESLGACPMQEWSTYRLTGEALTELGRTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE46</accession>
    <name>A0A0Q8VE46_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF1992 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10670</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894798.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52865">
        <property type="protein sequence ID" value="KRC52865"/>
        <property type="gene ID" value="ASE19_10670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1950808at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018961">
        <property type="entry name" value="DnaJ_homolog_subfam-C_membr-28"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09350">
        <property type="entry name" value="DUF1992"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1992" evidence="2">
        <location>
            <begin position="34"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="20825" checksum="5DB1F08529B3D5D8" modified="2016-01-20" version="1">MSEQQHEDPAAEAAQRRAAEQKAARARIEQQQTWVDLQVRQAMERGEFDDLPGAGKPIEGLGATHDPDWWVKRLVEREQITVLPPALQLRKDDASLDGELDAMGSEREVRAFVEDFNARVIRARYTPVDGPPLITMPRDVDATVAAWRERAEARRAAWRAAQAVTDAAAPTRRGSLRGWLRRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEC4</accession>
    <name>A0A0Q8VEC4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11275</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52973">
        <property type="protein sequence ID" value="KRC52973"/>
        <property type="gene ID" value="ASE19_11275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="132"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="132"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="165" mass="17313" checksum="C36ABB4C07250C98" modified="2016-01-20" version="1">MTFLARSISWSPRSGLHSTMKLILPSDSAVIPSFTASTVMILMSLPGSRPAASIASMAPRPMSSLWAKTTSMPFSELRNDSMTCLPPSRVKSPVCDLLIAIFESDLIASAKPSARSIAGAAPVVPSSWTTLMSPSPSTSASAAFSTSHSPAFLPSSTKSEPRKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGR4</accession>
    <name>A0A0Q8VGR4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PepX_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12055</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53648">
        <property type="protein sequence ID" value="KRC53648"/>
        <property type="gene ID" value="ASE19_12055"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008239">
        <property type="term" value="F:dipeptidyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005674">
        <property type="entry name" value="CocE/Ser_esterase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000383">
        <property type="entry name" value="Xaa-Pro-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013736">
        <property type="entry name" value="Xaa-Pro_dipept_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02129">
        <property type="entry name" value="Peptidase_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08530">
        <property type="entry name" value="PepX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00939">
        <property type="entry name" value="PepX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00976">
        <property type="entry name" value="NonD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PepX_C" evidence="1">
        <location>
            <begin position="319"/>
            <end position="547"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="553" mass="61196" checksum="4D80E6675CB89832" modified="2016-01-20" version="1">MPPTLQVELDVPATMRDGVVLRADVYRPVGTGRWPTLVVRTPYDKSDIWGNWWNGFSPTEIARKGFIMVIQDVRGRYASDGVWEPLHHEGRDGADTIAWAAELAGSNGRVGMVGGSYCGHTQWRAAMEQPTALHAITPLMTWAEPREALVARGGATQISVITSWSLASGFNWLTRQELTNEERAARAASMVEDFDRLEADGYWGLPVSELPVLRRHGTPLFVEPSSANDVAATQHMRVAGSYARVEVPSLHTGGWFDSCLQGTLDAYMAMRDLGRESRVIVGPWTHEDFGGRVGDQDYGLMSLRDAGTHPNGTWCDEVLAFLRRHLTDDNHAPASSPVRIFVMGLNRWRDEETWPLERARTEQWHLHAGGSLSTDPPVNENPSEITYDPADPVPTWGGPLGVGPGRGPFEQTSVEARDDVLVFTSEVLEQDLEVTGPIRVKLHVQSSAPSTDWVARLCDVHPDGQSFNLCDGIRRLDSGADEVQGIEIDLWATSNVFLAGHRIRVQVTNSCFPRWDRNLNTGDQQSADFVAAHQTLFHDADRPSYVELPVVAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGW8</accession>
    <name>A0A0Q8VGW8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02430</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892720.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56702">
        <property type="protein sequence ID" value="KRC56702"/>
        <property type="gene ID" value="ASE19_02430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2048663at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021401">
        <property type="entry name" value="DUF3040"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11239">
        <property type="entry name" value="DUF3040"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="67"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="94"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="15901" checksum="53479149FB758815" modified="2016-01-20" version="1">MPLSEEELRLLEQMERALSEEDPKFASTLRGTTLRQAARRRAILAGVVFAAGVAVMMGGAVSGYWPVGVAGFVVMLGSATVLMSALRGQRASGTEPHIAAHPSGFGIVDGGRSRSPRGPRSRGSRGHSHGGFMATLQARWRRRRDNGGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHS9</accession>
    <name>A0A0Q8VHS9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07855</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895412.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53981">
        <property type="protein sequence ID" value="KRC53981"/>
        <property type="gene ID" value="ASE19_07855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1842531at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="119" mass="12942" checksum="6125EBFD3C4827FD" modified="2016-01-20" version="1">MTESAPTPATAFAHGPIVWDDEIWVLARHEAGDRLGLTLHHREEEGLGQLSDEHASQLGRIGNRLVRIIEHLPGAGRVDLGRVTTGSHVQLTFEFDGVTEAQLHEVAVKLANWGGIARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI40</accession>
    <name>A0A0Q8VI40_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">ATP synthase subunit alpha</fullName>
            <ecNumber evidence="10">7.1.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">ATP synthase F1 sector subunit alpha</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">F-ATPase subunit alpha</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">atpA</name>
        <name evidence="15" type="ORF">ASE19_03205</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + 4 H(+)(in) + H2O = ADP + 5 H(+)(out) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:57720"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.1.2.2"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the ATPase alpha/beta chains family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.2.2" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892850.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56831">
        <property type="protein sequence ID" value="KRC56831"/>
        <property type="gene ID" value="ASE19_03205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="837522at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd18113">
        <property type="entry name" value="ATP-synt_F1_alpha_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01132">
        <property type="entry name" value="F1_ATPase_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.150.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01346">
        <property type="entry name" value="ATP_synth_alpha_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023366">
        <property type="entry name" value="ATP_synth_asu-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000793">
        <property type="entry name" value="ATP_synth_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038376">
        <property type="entry name" value="ATP_synth_asu_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033732">
        <property type="entry name" value="ATP_synth_F1_a"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005294">
        <property type="entry name" value="ATP_synth_F1_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020003">
        <property type="entry name" value="ATPase_a/bsu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004100">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036121">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00306">
        <property type="entry name" value="ATP-synt_ab_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02874">
        <property type="entry name" value="ATP-synt_ab_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50615">
        <property type="entry name" value="SSF50615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00962">
        <property type="entry name" value="atpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00152">
        <property type="entry name" value="ATPASE_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="5 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 10" id="KW-0139">CF(1)</keyword>
    <keyword evidence="10" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="6 10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 10" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ATP-synt_ab_N" evidence="14">
        <location>
            <begin position="30"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-synt_ab" evidence="12">
        <location>
            <begin position="153"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-synt_ab_C" evidence="13">
        <location>
            <begin position="384"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="516"/>
            <end position="545"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="525"/>
            <end position="545"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="173"/>
            <end position="180"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Required for activity" evidence="10">
        <location>
            <position position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC56831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="545" mass="58648" checksum="89DABC7272BCE403" modified="2016-01-20" version="1">MTELSIRPDEIRDALAKYVADFEPGAASKEEVGTVASAGDGIARVSGLPSAMANELLEFEDGTLGLALNLEDREIGVVVLGDFDKIEEGQTVRRTGEILSVPVGEGYLGRVVDPLGKPIDGLGEIATDGRRALELQAPGVMSRKSVHEPLATGIKAIDSMTPIGRGQRQLIIGDRATGKTTVAIDTIINQKQNWESGDPTKQVRCIYVAIGQKGSTIASVRGALEEAGALEYTTIVAAPASDSAGFKYLAPYTGSAIGQHWMYAGQHVLIVFDDLTKQAEAYRAVSLLLRRPPGREAYPGDVFYLHSRLLERCAKLSDELGAGSMTGLPIIETKANDVSAFIPTNVISITDGQIFLQSDLFAANQRPAIDVGISVSRVGGSAMTKAMKAVTGSLKVDLAQYRAMEAFAMFASDLDAASKQQLARGQRLMALLKQPAYSPYPLEEMTVSLWLGTSGKLDAVPTGDVLRFEHEFLDYLRRSHEGLLAAIRETQKFEDEDGLVAAYDSFLNQFETSEGNSIKVGHEPEAGALADDELEQEQIVKQKRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI75</accession>
    <name>A0A0Q8VI75_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cytochrome C oxidase assembly protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_02760</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57035">
        <property type="protein sequence ID" value="KRC57035"/>
        <property type="gene ID" value="ASE19_02760"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019108">
        <property type="entry name" value="Caa3_assmbl_CtaG-rel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09678">
        <property type="entry name" value="Caa3_CtaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="61"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="94"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="137"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="176"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="205"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="259"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="280"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC57035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="314" mass="34262" checksum="BC2E2515D04E45E6" modified="2016-01-20" version="1">MVVTAAASATGNLPPFDAGALLSQWGLAPVPLVVTVWSVGLYVLGVVTLRRRGDSWPVGRSIAWGVGMVAFYLATSSGLAAYDTVLLSVHMVQHMVLSMVVPLSLALGAPVTLALRTLPRLPRGWLLALLHSRLAKVLGFPPLAFGLYVLSPWALYFSSWYDASLRSTYVHEMMHVHLVVVGALFFWPIVGVDPLPGRVAHPFRVLLTVMTLPFHAFLGVTIMGQKTLLGGDWYPRLHDGPLGSWLPDPYDDQHLAGGILWGAGDLVGVVFFVVLFIQWVRSSMKEAEREDRRLDRLERLAAAEASRPGAAEPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI89</accession>
    <name>A0A0Q8VI89_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Peptide ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_08245</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895480.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54048">
        <property type="protein sequence ID" value="KRC54048"/>
        <property type="gene ID" value="ASE19_08245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1181903at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="7"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="43"/>
            <end position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="24645" checksum="417A5009066B735F" modified="2016-01-20" version="1">MTSPLAASTRGLTKSYGRGDTLVPALRGIDLDLPAGRFTAIMGPSGSGKSTLMHCLAGLDQPTSGSVTVAGQALEDLDDDALTHFRRDHVGFVFQAFNLLPMLTAEQNIWLPAELAGRSTTGLRDRFDQVVTSLGIADRLTHRPAELSGGQQQRVAIARALLGEPAIVFADEPTGNLDSAASAEVLSLLRQSVRELGQTVVMVTHETEAAQYADDVVVLADGRIVERREVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIA8</accession>
    <name>A0A0Q8VIA8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ArsR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03665</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892928.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56911">
        <property type="protein sequence ID" value="KRC56911"/>
        <property type="gene ID" value="ASE19_03665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1617768at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01022">
        <property type="entry name" value="HTH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="97"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="105"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="119" mass="13318" checksum="BDB295C4C917ECD3" modified="2016-01-20" version="1">MNVTDPLSAAAEPNRRRLLQLLASGPRSVTELAEQFPVTRSAISQHLLVLAEAGLVEAEKSGRQRIYRVVPDGLRRLQAEIDRFWTAELDLLVADAEELRARRTPPENTQNTQDTQESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIE5</accession>
    <name>A0A0Q8VIE5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aminotransferase</fullName>
            <ecNumber evidence="1">2.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11140</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.-" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52951">
        <property type="protein sequence ID" value="KRC52951"/>
        <property type="gene ID" value="ASE19_11140"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004838">
        <property type="entry name" value="NHTrfase_class1_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00105">
        <property type="entry name" value="AA_TRANSFER_CLASS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="2">
        <location>
            <begin position="34"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="389" mass="41819" checksum="39EDAA0741D11479" modified="2016-01-20" version="1">MTDRFTAALRANVPPFHVMDLLAGAAERQRTHGDLLNLVAGQPSTGAPAPVTAEAIRLLGTGDPLGYTTAIGIPELREAIAGHHRRRYGIDVTADDVVLTTGSSGGFLLAFLAAFDAGARVAIARPGYPCYRNVLAALGCEVVEIPTGAETRFQPTVDQLAEAHARQPLDGLVVASPANPTGTMLQPEELATIARWCEENRVQLVSDEIYHGIQYAGARASCAWETSREAVVFGSFSKYFSMTGWRLGWMLSPERLRRPVDILTGNFSICPPVLAQHAALAAFEEASYAELDGHVQRYAHNRELLLEGLPRLGITELAPADGAFYAYADVAHLTRDSMAYARDLLARTGVAVATGIDFDTVDGGHFLRFSFAGSTDDIVRALDRLDGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJM8</accession>
    <name>A0A0Q8VJM8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GlcNAc-PI de-N-acetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23715</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893971.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57765">
        <property type="protein sequence ID" value="KRC57765"/>
        <property type="gene ID" value="ASE19_23715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1282433at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016137">
        <property type="term" value="P:glycoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10320">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003737">
        <property type="entry name" value="GlcNAc_PI_deacetylase-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024078">
        <property type="entry name" value="LmbE-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12993">
        <property type="entry name" value="PTHR12993"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02585">
        <property type="entry name" value="PIG-L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102588">
        <property type="entry name" value="SSF102588"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="248" mass="26881" checksum="5E5D4EBE0389BA04" modified="2016-01-20" version="1">MADTPTTLQPIDEDWTRALCIVAHPDDMEFGAAAAVARWTGQGKSVVYCMVTSGEAGIDGLAPDECRTVREAEQVASAEVVGVDVVEFLGLPDGVVEYGVPLRRTLAEVVRRHRPEIVVTGNFRDTWGGRNLNQADHIAVGRAVLDAVRDAGNRWVFDEQLAGDLEPWGGVREVWAFGSPESTHAVDTTATFDAGVESLKAHAAYIDGLGWENWDPREFLEGMARATGTRLGVPFAAPFEVFPMGWGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKI6</accession>
    <name>A0A0Q8VKI6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">dCTP deaminase, dUMP-forming</fullName>
            <ecNumber evidence="3">3.5.4.30</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Bifunctional dCTP deaminase:dUTPase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">DCD-DUT</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">dcd</name>
        <name evidence="5" type="ORF">ASE19_10825</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>dCTP + 2 H2O = diphosphate + dUMP + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:19205"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61481"/>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <dbReference type="EC" id="3.5.4.30"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Pyrimidine metabolism; dUMP biosynthesis; dUMP from dCTP: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the dCTP deaminase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.30" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895176.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53623">
        <property type="protein sequence ID" value="KRC53623"/>
        <property type="gene ID" value="ASE19_10825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1598407at2"/>
    <dbReference type="UniPathway" id="UPA00610">
        <property type="reaction ID" value="UER00667"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033973">
        <property type="term" value="F:dCTP deaminase (dUMP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008829">
        <property type="term" value="F:dCTP deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006226">
        <property type="term" value="P:dUMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006229">
        <property type="term" value="P:dUTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07557">
        <property type="entry name" value="trimeric_dUTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00146">
        <property type="entry name" value="dCTP_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010550">
        <property type="entry name" value="dCTP_deam_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011962">
        <property type="entry name" value="dCTP_deaminase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036157">
        <property type="entry name" value="dUTPase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033704">
        <property type="entry name" value="dUTPase_trimeric"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06559">
        <property type="entry name" value="DCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51283">
        <property type="entry name" value="SSF51283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02274">
        <property type="entry name" value="dCTP_deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 3" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="161"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="171"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="3">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="101"/>
            <end position="106"/>
        </location>
        <ligand>
            <name>dCTP</name>
            <dbReference type="ChEBI" id="CHEBI:61481"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>dCTP</name>
            <dbReference type="ChEBI" id="CHEBI:61481"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="127"/>
            <end position="129"/>
        </location>
        <ligand>
            <name>dCTP</name>
            <dbReference type="ChEBI" id="CHEBI:61481"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>dCTP</name>
            <dbReference type="ChEBI" id="CHEBI:61481"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>dCTP</name>
            <dbReference type="ChEBI" id="CHEBI:61481"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>dCTP</name>
            <dbReference type="ChEBI" id="CHEBI:61481"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for bifunctional activity" evidence="3">
        <location>
            <begin position="116"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="191" mass="21220" checksum="5F9556A79B610FF1" modified="2016-01-20" version="1">MLLSDRDITAEIDRGRIALEPYDPAMMQPSSIDVRLDRFFRVFDNHKYPSIDPAADQSDLTRVVEPEGDEPFILHPGEFVLGSTYEVVTLPDDIAARVEGKSSLGRLGLLTHATAGFVDPGFSGHVTLELANVATLPIKLYPGMKIGQFCFFRLTSPSEHPYGSEKYGSRYQGQRGPTPSRSFQSFHRTSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL10</accession>
    <name>A0A0Q8VL10_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">3-isopropylmalate dehydrogenase</fullName>
            <ecNumber evidence="3">1.1.1.85</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">3-IPM-DH</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Beta-IPM dehydrogenase</fullName>
            <shortName evidence="3">IMDH</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">leuB</name>
        <name evidence="5" type="ORF">ASE19_05420</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the oxidation of 3-carboxy-2-hydroxy-4-methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2-oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>(2R,3S)-3-isopropylmalate + NAD(+) = 4-methyl-2-oxopentanoate + CO2 + NADH</text>
            <dbReference type="Rhea" id="RHEA:32271"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:17865"/>
            <dbReference type="ChEBI" id="CHEBI:35121"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.85"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="3">Binds 1 Mg(2+) or Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.85" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894185.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54896">
        <property type="protein sequence ID" value="KRC54896"/>
        <property type="gene ID" value="ASE19_05420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1551125at2"/>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00072"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003862">
        <property type="term" value="F:3-isopropylmalate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01035">
        <property type="entry name" value="LeuB_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019818">
        <property type="entry name" value="IsoCit/isopropylmalate_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024084">
        <property type="entry name" value="IsoPropMal-DH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023698">
        <property type="entry name" value="LeuB_actb"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00180">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01329">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00470">
        <property type="entry name" value="IDH_IMDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0432">Leucine biosynthesis</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 3" id="KW-0464">Manganese</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0520">NAD</keyword>
    <keyword evidence="3 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Iso_dh" evidence="4">
        <location>
            <begin position="14"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="144"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="235"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="259"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="263"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="295"/>
            <end position="307"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="3">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="3">
        <location>
            <position position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM01329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="363" mass="38383" checksum="71F87688B33CC393" modified="2016-01-20" version="1">MTATPFTPATGQVDLAVIPGDGIGPEVTAEALKVLEVAAPAELKFARTQYDLGAERYLATGEVLPESVLEEIRGQDAILLGAVGGKPNDPNLPPGILERGLLLKLRFELDHYVNLRPSRLYPGSVAPLSDAVLGKGEIDFVVVREGTEGPYTGNGGALRVGTPAEVATEVSVNTAFGVERVIRDAFARAQKRPRKKLTLVHKTNVLVNAGSVWWRLFQEVAKEFPDVTTDYSHIDAVMIYLTTDPQRFDVIVTDNLFGDIVTDLAAAITGGIGLAASGNVNPDRTAPSMFEPVHGSAPDIAGQLIADPTAAILSGALLLDHLGHPEAAARIETAVLADLEAREPGTQRRTPEVGDAIAARVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLM9</accession>
    <name>A0A0Q8VLM9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">Adenylate kinase</fullName>
            <shortName evidence="6">AK</shortName>
            <ecNumber evidence="6 8">2.7.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">ATP-AMP transphosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">ATP:AMP phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Adenylate monophosphate kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">adk</name>
        <name evidence="9" type="ORF">ASE19_06480</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 8">
            <text>AMP + ATP = 2 ADP</text>
            <dbReference type="Rhea" id="RHEA:12973"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Purine metabolism; AMP biosynthesis via salvage pathway; AMP from ADP: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="6">Consists of three domains, a large central CORE domain and two small peripheral domains, NMPbind and LID, which undergo movements during catalysis. The LID domain closes over the site of phosphoryl transfer upon ATP binding. Assembling and dissambling the active center during each catalytic cycle provides an effective means to prevent ATP hydrolysis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the adenylate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.3" evidence="6 8"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55073">
        <property type="protein sequence ID" value="KRC55073"/>
        <property type="gene ID" value="ASE19_06480"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00588">
        <property type="reaction ID" value="UER00649"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004017">
        <property type="term" value="F:adenylate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044209">
        <property type="term" value="P:AMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01428">
        <property type="entry name" value="ADK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00235">
        <property type="entry name" value="Adenylate_kinase_Adk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000850">
        <property type="entry name" value="Adenylat/UMP-CMP_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033690">
        <property type="entry name" value="Adenylat_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23359">
        <property type="entry name" value="PTHR23359"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00094">
        <property type="entry name" value="ADENYLTKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00113">
        <property type="entry name" value="ADENYLATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3 6" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="4 6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6 7" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="NMP" evidence="6">
        <location>
            <begin position="25"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="5"/>
            <end position="10"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="26"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="52"/>
            <end position="54"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="80"/>
            <end position="83"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC55073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="20008" checksum="F664702CBA1057DC" modified="2016-01-20" version="1">MGPPGAGKGTQATAVAAHFAIPAISTGDIFRANVGQGTPLGVEAKRYMDAGEYVPDEVTNKMVRGRIAEPDAEAGFLLDGYPRTLAQVTELDGMIDATGHRLDAVLVLTVDQEALLGRLLKRAEIEGRADDTEDVIRRRLEVYSAETEPLIAVYAERGLVVSVDGMGEIDEVQQRIFEALDDIPQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM64</accession>
    <name>A0A0Q8VM64_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">ATP-dependent Clp protease proteolytic subunit</fullName>
            <ecNumber evidence="2">3.4.21.92</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Endopeptidase Clp</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">clpP</name>
        <name evidence="4" type="ORF">ASE19_04845</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Fourteen ClpP subunits assemble into 2 heptameric rings which stack back to back to give a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2 3">Belongs to the peptidase S14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.92" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894279.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54802">
        <property type="protein sequence ID" value="KRC54802"/>
        <property type="gene ID" value="ASE19_04845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1728970at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07017">
        <property type="entry name" value="S14_ClpP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00444">
        <property type="entry name" value="ClpP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001907">
        <property type="entry name" value="ClpP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023562">
        <property type="entry name" value="ClpP/TepA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10381">
        <property type="entry name" value="PTHR10381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00574">
        <property type="entry name" value="CLP_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00127">
        <property type="entry name" value="CLPPROTEASEP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 4" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0720">Serine protease</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="199" mass="21425" checksum="165AC3C996AFF951" modified="2016-01-20" version="1">MSSYTIPNVIAQHPRGERVMDVYSHLLTERVVYLGTAIDAGVANALVAQLLFLEADNPDRDIQLYINCEGGDPSAMLAVHDTLQYIRPQVATTCVGQAVAVGAVLLAAGAPGKRSALPHARVVLHQPAASGRGPIPDLILQADEVVRVRADIERILSRHTGQDVARLRADTDHDRVFTAAAAREYGLIDQVIEERPALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMX7</accession>
    <name>A0A0Q8VMX7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SIR2_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22655</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892614.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58869">
        <property type="protein sequence ID" value="KRC58869"/>
        <property type="gene ID" value="ASE19_22655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="464099at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039444">
        <property type="entry name" value="SIR2-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13289">
        <property type="entry name" value="SIR2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SIR2_2" evidence="1">
        <location>
            <begin position="159"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="575" mass="62602" checksum="BDBFF691897F56F9" modified="2016-01-20" version="1">MLERFDTVFAEFAVAFNEGQYVLWLGSGISRERVPNVYELLERVTEHLRSNIIAQDPNCAYRSALNEVLQLANLRREELETLDFSVAIEAWPLRDRIVSALVTNYSRVLDVLVGDENPDDYLIWTGLDVPNTYGSPDLEPDVEHYCVAILMLEGLVASAVTANWDGLLEKALDELTPASASLVRVAVKPDDFRIAGPRIDVIKFHGCAVLARYGDAGYRALLVGRESQISGWTEQPENRSMRKHLELLYTDRLTLMVGLSAQDANLHTVFAAAIQDLARPWPASPPAVVLSEERLESYHRNLLRLTYGSNHQGNAGAIAQSALLGAYGKPTLLALVLSSLTDKLSFLIEHALGVTADSYEVGKLRADLITMRNSAASHADPEDPDALEHLAIMEFQRAYFARVIDVTNLALTIFRTGRTPLAGGPSYEPLSDRPITQAVHGADFPAMQFGRFGVALALIGRGLASGHWSVVPGDSKAPGGGVVRLVTAQRDARVFFVKDATTLTNLELDGSFDDSDGDVLIVVADEEPPALTRSPKPRFGRDGKASAGRFNVGSSIADTKSADGLFEAFKLAGGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMY8</accession>
    <name>A0A0Q8VMY8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_22690</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892609.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58874">
        <property type="protein sequence ID" value="KRC58874"/>
        <property type="gene ID" value="ASE19_22690"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="62"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="93"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="127"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="177"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="209"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="265"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC58874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="341" mass="36043" checksum="F784B40615B6A843" modified="2016-01-20" version="1">MTRPQAPSGDVAITLGGVGAVAVLVALGAERGFWASNLHNAVLAASFTLVGSIVLSRRPGHVEGRLFVLVGLCSAVLYSARQVGLSSSSRADAWWGWLGVWPTAVIIGMTTWVILCFPEGRPLSRSWLRVAALASGLATVSALLSALYPVEYDDAGVGTPFPFDLGGRALAQDVWNVLGHGSYLLLQVLWIVGLVARWRASDSAVRRQLALLLATVVGVSVVLVAGLATAGSPTPGLIALGVVPVVAGWLLDRLSLAHVVEIETAAGRLPELSARENEVLELMAQGLSNAAIAERLHLSVKTVEPAISSIFRKLGLHEEPASNRRVLAVVQYWSRPARQPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN79</accession>
    <name>A0A0Q8VN79_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Glucanase</fullName>
            <ecNumber evidence="2">3.2.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04035</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the glycosyl hydrolase family 6.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892996.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56979">
        <property type="protein sequence ID" value="KRC56979"/>
        <property type="gene ID" value="ASE19_04035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1331351at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030245">
        <property type="term" value="P:cellulose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016288">
        <property type="entry name" value="Beta_cellobiohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036434">
        <property type="entry name" value="Beta_cellobiohydrolase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34876">
        <property type="entry name" value="PTHR34876"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01341">
        <property type="entry name" value="Glyco_hydro_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001100">
        <property type="entry name" value="Beta_cellobiohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00733">
        <property type="entry name" value="GLHYDRLASE6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51989">
        <property type="entry name" value="SSF51989"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="2" id="KW-0136">Cellulose degradation</keyword>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0624">Polysaccharide degradation</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005966893" description="Glucanase" evidence="2">
        <location>
            <begin position="24"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR001100-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="387" mass="42497" checksum="3D62FA53AA22A42F" modified="2016-01-20" version="1">MRRTVILVGALVAALLSLRPAGADPLNTANPLQDSGPWQYSTIATKANPELLNHLAETDPVRRAALGRVALTPRVRWFANCGSCNVATVQRSESAYVADARRGKPDALVQLAVFGLWPNGEVVNGRRPAMSWSMTRYQAWIRQIAAGIGNARAAVVLEPDLAISANHGADGRSRPDPTPALRMRMAAWAAQYLSTALPRTTVYLDAGSADWLYVDEAVRLLKASGIRYARGFALGATHYDSVAANVAFAAKVSAALAKAGIPGKRAIIDTADNGTPFTWAQWNARWGDRYRATGNELYLFDNTPTCRSRTEKVCQTLGHRPTWTPVDAEAAKLGLGTDHPALRRQARQYVDAYLWFGRGWRWMQQGGNDPYTEGRTVRMATYSRFRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPC9</accession>
    <name>A0A0Q8VPC9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cysteine methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04590</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894323.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54759">
        <property type="protein sequence ID" value="KRC54759"/>
        <property type="gene ID" value="ASE19_04590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1928537at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06445">
        <property type="entry name" value="ATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014048">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036217">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNAb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01035">
        <property type="entry name" value="DNA_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46767">
        <property type="entry name" value="SSF46767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA_binding_1" evidence="1">
        <location>
            <begin position="12"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="104" mass="11131" checksum="CA66228345614553" modified="2016-01-20" version="1">MLDVLVDEGYVESVLELVEQVPEGRVTTYGALAAVAGGGPRQIGSVMARYGAPVPWWRVVRADGTLPDSHGDRARENYLAEGTPLRTSGGLDMSRAFWDPATGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQN1</accession>
    <name>A0A0Q8VQN1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Imidazoleglycerol-phosphate dehydratase</fullName>
            <shortName evidence="5">IGPD</shortName>
            <ecNumber evidence="5 6">4.2.1.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hisB</name>
        <name evidence="7" type="ORF">ASE19_02260</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + H2O</text>
            <dbReference type="Rhea" id="RHEA:11040"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57766"/>
            <dbReference type="ChEBI" id="CHEBI:58278"/>
            <dbReference type="EC" id="4.2.1.19"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 6/9.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the imidazoleglycerol-phosphate dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.19" evidence="5 6"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892690.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56672">
        <property type="protein sequence ID" value="KRC56672"/>
        <property type="gene ID" value="ASE19_02260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1278103at2"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00011"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004424">
        <property type="term" value="F:imidazoleglycerol-phosphate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07914">
        <property type="entry name" value="IGPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00076">
        <property type="entry name" value="HisB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038494">
        <property type="entry name" value="IGPD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000807">
        <property type="entry name" value="ImidazoleglycerolP_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020565">
        <property type="entry name" value="ImidazoleglycerP_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23133">
        <property type="entry name" value="PTHR23133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00475">
        <property type="entry name" value="IGPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00954">
        <property type="entry name" value="IGP_DEHYDRATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00955">
        <property type="entry name" value="IGP_DEHYDRATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 6" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="4 5 6" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="203" mass="21970" checksum="DD51D0AEAFEDF1AF" modified="2016-01-20" version="1">MTARTARVERQTSESKVLVEVNLDGTGRHDISTGVGFYDHMLTALARHALLDLTVQTEGDVHIDAHHTTEDTAIALGQALREALGDKKGIRRFGDATVPLDEALVHAVVDVSGRPYCVHTGEPEGQQYVQLGGSGVSYLGSLTQHVFESIAFHGHFALHVRVLAGREPHHIVETQFKAFARALRDAIALDPRETGIPSTKGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQR6</accession>
    <name>A0A0Q8VQR6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00550</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59558">
        <property type="protein sequence ID" value="KRC59558"/>
        <property type="gene ID" value="ASE19_00550"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360279" evidence="1">
        <location>
            <begin position="30"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="122" mass="13083" checksum="FCF86553BC18B501" modified="2016-01-20" version="1">MQMKLRTFGLLAVTVLVTGLLALADGASAQDGPRAPRWQPSGDTIVAVEGDADNGFTIHHYDGTSLSPPTLSETTAECGEYDTEVAVTACQVEVETWFRDLADLQAAIAWARYDAARSRPGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQT0</accession>
    <name>A0A0Q8VQT0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01550</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896607.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59732">
        <property type="protein sequence ID" value="KRC59732"/>
        <property type="gene ID" value="ASE19_01550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004111">
        <property type="entry name" value="Repressor_TetR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02909">
        <property type="entry name" value="TetR_C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="13"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="23103" checksum="2C33283FC5E64EA9" modified="2016-01-20" version="1">MASERAARRTRRVLTREEILDAAVVLVDTEGLAALSMRRLADALGVGAMTVYGFVANKEELVSGLAAHVLRGLEADVPDGLGWRATMLAELDALRGAIERHPGLLELLSVGVEHMPLLDRTRERLVAVLGAEGFDDDTVVDGLGALVALTLGFTVGATLRSGPLGDSYGRLADLDGAEFPHLRALGADYAAHWSRRAWLAGVEALLDGMEARRAAVSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQW6</accession>
    <name>A0A0Q8VQW6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Taurine ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_00435</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896904.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59800">
        <property type="protein sequence ID" value="KRC59800"/>
        <property type="gene ID" value="ASE19_00435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1531811at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="96"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="122"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="185"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="215"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="56"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC59800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="250" mass="26606" checksum="BC1A14E357725D4E" modified="2016-01-20" version="1">MWSVVAAADLVEPHYLTPSPLEVWDAFVRANSHHAVGGGVDRVVRGEENYYLWEHLVVSLRRIGLGLGLGVVVGVPLGLLMGTVRWVGDLAGPYVDFLRSLPPLAYIGFLVAWFGIYDASKVWLLFLAAFPPITLATINGVRGVRQDQLNAARSLGASGLQLQTQVIIPATLPDILSGLRVAVGFAWTTVVAAELVNGLPGIGGLAYLSGTQNKIALSVACILVIGLTAIALDAVIRTIEKLVVPWRGKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRJ0</accession>
    <name>A0A0Q8VRJ0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase</fullName>
            <ecNumber evidence="7">6.3.2.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Meso-A2pm-adding enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Meso-diaminopimelate-adding enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">UDP-MurNAc-tripeptide synthetase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">UDP-N-acetylmuramyl-tripeptide synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">murE</name>
        <name evidence="12" type="ORF">ASE19_02390</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + meso-2,6-diaminoheptanedioate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioate</text>
            <dbReference type="Rhea" id="RHEA:23676"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
            <dbReference type="ChEBI" id="CHEBI:83905"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="7 8">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="7">Carboxylation is probably crucial for Mg(2+) binding and, consequently, for the gamma-phosphate positioning of ATP.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the MurCDEF family. MurE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.13" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893059.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57024">
        <property type="protein sequence ID" value="KRC57024"/>
        <property type="gene ID" value="ASE19_02390"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008765">
        <property type="term" value="F:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00208">
        <property type="entry name" value="MurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000713">
        <property type="entry name" value="Mur_ligase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035911">
        <property type="entry name" value="MurE/MurF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005761">
        <property type="entry name" value="UDP-N-AcMur-Glu-dNH2Pim_ligase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01225">
        <property type="entry name" value="Mur_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63418">
        <property type="entry name" value="SSF63418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01085">
        <property type="entry name" value="murE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7 8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2 7 8" id="KW-0132">Cell division</keyword>
    <keyword evidence="3 7 8" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7 8" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 12" id="KW-0436">Ligase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 7 8" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase" evidence="9">
        <location>
            <begin position="34"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_M" evidence="11">
        <location>
            <begin position="122"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="10">
        <location>
            <begin position="342"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="region of interest" description="UDP-MurNAc-L-Ala-D-Glu binding" evidence="7">
        <location>
            <begin position="166"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="region of interest" description="Meso-diaminopimelate binding" evidence="7">
        <location>
            <begin position="417"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Meso-diaminopimelate recognition motif" evidence="7">
        <location>
            <begin position="417"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="124"/>
            <end position="130"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="393"/>
        </location>
        <ligand>
            <name>meso-2,6-diaminoheptanedioate</name>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="469"/>
        </location>
        <ligand>
            <name>meso-2,6-diaminoheptanedioate</name>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="473"/>
        </location>
        <ligand>
            <name>meso-2,6-diaminoheptanedioate</name>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="7">
        <location>
            <position position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC57024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="497" mass="51183" checksum="C77F12466D53FA7C" modified="2016-01-20" version="1">MDPTRPAQPAPVPLATVAADLGVVVDPASTGVAVTGITLDSRRVRPGDLYAALPGARAHGASFAAQAAASGAVALLTDPAGEPEARAGGLPVLVVPDPRGVLGALAALVYGRPAAALRTIGVTGTQGKTTVTRLLDGGLLAAGVRSAVVGTVGTRIAGEEVKTALTTPEAPDLHGLFARMRELEVTACAMEVSSHALVMGRVDGVRFDVAVFTNLGRDHLDFHVDVEDYFRAKAMLFTPEHAALGLVCTDDEHGRRLVDEATIPVRTYAIGRPADWTAVDVELGADGSRFTVLGPDGVRVPAFVPLPGDFNVANALAAVAAAAEAGFDPQQVADGIAGSGGVPGRLERVPTGRDLTVVVDYAHKPDAVEAVLRTLRPVTRGRLVIVIGAGGDRDTGKRPVMGEIAARLADLVIVTDDNPRSEDPAAIRAEVLAGTRDGTAEVVEVGDRRTAIERAIDGAGPGDVVVVAGKGHETGQEVAGVVHPFDDREVVREVLAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRV8</accession>
    <name>A0A0Q8VRV8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PadR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02920</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892804.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56786">
        <property type="protein sequence ID" value="KRC56786"/>
        <property type="gene ID" value="ASE19_02920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1706427at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005149">
        <property type="entry name" value="Tscrpt_reg_PadR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03551">
        <property type="entry name" value="PadR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PadR" evidence="1">
        <location>
            <begin position="15"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="110" mass="11932" checksum="87BA8439DFDE652A" modified="2016-01-20" version="1">MDTTQLLKGVLDLAVLAVVEDEDGYGYDVLRRLRSAGLGDVGDASVYGTLRRLYAAGALTSYVVPSDEGPHRKYYGITPGGRDQLKRQSEDWLHFSAAVTTLLSGQEARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VS57</accession>
    <name>A0A0Q8VS57_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23800</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893991.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57357">
        <property type="protein sequence ID" value="KRC57357"/>
        <property type="gene ID" value="ASE19_23800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1485646at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="220" mass="22127" checksum="6F775FB31E8E96B2" modified="2016-01-20" version="1">MTVTVLVGGGRDQARVRALLEPFVAASAGGEVACVVVDDGEGVDLDRWHGVLGDAGAIRDVVLEQGRPLRAEDLDGVAGVFVAGGLTPLYAELVVPQAAALSALPYAGFSAGAAIAAERALVGGWLLDGGEVCSEDASEDLGELTVVDGLGRVPFAIDVHAAQWGTTTRAIAAVAAGLVDEVRAVDEHTAVVVVNGELHVTGAGQALLVSPGTDGVLVHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUY9</accession>
    <name>A0A0Q8VUY9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_03970</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892984.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56967">
        <property type="protein sequence ID" value="KRC56967"/>
        <property type="gene ID" value="ASE19_03970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="27"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="7">
        <location>
            <begin position="125"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="87"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="87"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC56967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="183" mass="19689" checksum="E7AC15003A81ACD2" modified="2016-01-20" version="1">MGVLGEEADDGDVAAAQGGDEAAFARLFRATQPGLLRYVAVLAGDDAEDVCAEAWAHACRDLPTFTGDLDAFRGWVARIARNRAVDLHRGRQRRPADPVPHEELPERATGSSEDLVVEAISSEEAIATIARLPREQAEAVMLRAVLGFDVKTTASVLGKRPGAVRVAAHRGLKALAEQFERPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUZ4</accession>
    <name>A0A0Q8VUZ4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896674.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59667">
        <property type="protein sequence ID" value="KRC59667"/>
        <property type="gene ID" value="ASE19_01175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1439833at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="30"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="303" mass="33533" checksum="2A10AE143CC8C310" modified="2016-01-20" version="1">MNQRTTALDRVALTSLVWGDVDDVSLPLALLLHGFPDTAHTWRHLGPALAAEGYRVVAPFTRGYAPSALPEDGSFHVPALMYDALALHRAYDGDERALLVGHDWGAITANGVAASDANPFGVIVSLAVPPFSAMNPRRDDVTRWLRILPRQAAMSWYTLFNQLPRVPERRFDRLVAHLWRKWSPGFDATTDLAHLAAALPDDAHRSAALGYYRAQPRTWQLPARYQPLAKDWVGAPRVPLLFLQGADDGCLDARWADRIGDRLPAGSRVAVVEGAGHFLQLEKPDVVNTLILEYLRERSAARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VV33</accession>
    <name>A0A0Q8VV33_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acetoin utilization protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01450</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the histone deacetylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896626.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59715">
        <property type="protein sequence ID" value="KRC59715"/>
        <property type="gene ID" value="ASE19_01450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1443295at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.800.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000286">
        <property type="entry name" value="His_deacetylse"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023801">
        <property type="entry name" value="His_deacetylse_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037138">
        <property type="entry name" value="His_deacetylse_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00850">
        <property type="entry name" value="Hist_deacetyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01270">
        <property type="entry name" value="HDASUPER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="SSF52768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hist_deacetyl" evidence="2">
        <location>
            <begin position="36"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="375" mass="40051" checksum="D0B834BF096A72C3" modified="2016-01-20" version="1">MTTGYVYNEVFGWHDTSTNAGLFPADHRLGIQPFQHFENAETKRRLHELVVVSGLIDRLTPVRPRKATDEEILLVHTPEHLAHVQNGSDQPKGGDSGDGLSPFGPGGIEIGRLAAGGVIALVEQVVDGAVDNGYALVRPPGHHAMPEQGMGFCMFGNLAIAAKAVRRSRGVERIAIVDWDVHHGNGTQAAFYDDPDTLTISIHQDRVFPPDTGHVHERGTGAGEGYALNIPLPPGTGHGGYLSAMDRVITPAIERFRPDLVLVASGFDANAADPLARQGLTSSAYRAMTERLLDVADRYAGGRLAMSHEGGYNPVYVPFCGLAVIEALAGVTEPLDDPYEPIFGGMGQLELQPHQTALLDEVVGLLDAIGSGDRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXH8</accession>
    <name>A0A0Q8VXH8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lipid-transfer protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23180</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892524.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58962">
        <property type="protein sequence ID" value="KRC58962"/>
        <property type="gene ID" value="ASE19_23180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="647502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thiolase_N" evidence="1">
        <location>
            <begin position="26"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="390" mass="41349" checksum="0308AA146655FB35" modified="2016-01-20" version="1">MSERTLSGKAAIAGIGATEFSKESGRSELQLSVEAVRHALTDCGLTPADVDGLVTFTMDTSSEIAVARELGIPELRFFSRINYGGGAACATVQQAAMAVATGVADVVVAYRGFNERSGDRFGQVSNWAAAQVNTNGLDNAWTYPLGLSTPAATVAMQARRYMHEYGATSEDFGRVAVADRRHAATNPAAFFFGKPITLEEHQASRMIADPLHLLDCCQESDGAVAIVVVSAERARDLAQKPAYITAAAQGSGKDQFVMTSYYREDIGIPEIGVVGRELWKQSGLTPADLPMAILYDHFTPYVLMQLEELGFCGRGEAKDFVRDGALEVGGRLPINTHGGQLGEAYIHGMNGIAEGVRQVRGTSVNPVADVENVLVTAGTGVPTSGLILSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYB3</accession>
    <name>A0A0Q8VYB3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_01085</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CdaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59649">
        <property type="protein sequence ID" value="KRC59649"/>
        <property type="gene ID" value="ASE19_01085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041522">
        <property type="entry name" value="CdaR_GGDEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17853">
        <property type="entry name" value="GGDEF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF_2" evidence="3">
        <location>
            <begin position="180"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_30" evidence="2">
        <location>
            <begin position="348"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="414" mass="45157" checksum="F23FE10EA0D7AF67" modified="2016-01-20" version="1">MPMSAAETELRGVAGLLAERRVELTAYLVGQFGERIPELPKDPTLVELLDGSSGANLENLAHLLRGHMPISEVQAPAAAVEYARRLAQRGTPPSALLRAYRLGQQLILRWAYDEIARRVADPALALQTTQLLTETSFEYVDAVSEDVIVAYQDERERWLANRSAVQRETVDALLRGERLDLTATEATLGYRLRQHHLGLVLWTTGAEAGLAESERLLTRLGQRVGAGGHALFVPRDRDTAWGWLPIGRSAEIDLDVVAEVLAEAADGIRVAVGVPEAGEPGFRTTHLAAAAAHQVALLGQQGAPVVSYADPTIRAAALLANDLDATRRMVARTLGELAADTEPAARMRETLLAFVEDRESYVATAARLHLHKNTVKYRVDRAIEARGKPLGEERLDLELALVACRWLGPEVLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYW0</accession>
    <name>A0A0Q8VYW0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_01160</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896677.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59664">
        <property type="protein sequence ID" value="KRC59664"/>
        <property type="gene ID" value="ASE19_01160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1523519at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="72"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="104"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="144"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="188"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="245"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="68"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="290" mass="31545" checksum="09051E9980A44AE9" modified="2016-01-20" version="1">MSASVLFDAPGPATRMRHRIYTAVASAGILAAVVYAVLKLNDDGQFEYDLWEPFVTPDYLGTLILDGLVDTVTMAVFAITGAVVFGFLFGVAKMSDHAFIRWPAWVVVEFFRAMPVLLLMIFVFSMWFISTKGSFLWIDQRGGFFSVVIALTCYNGAVLAEVVRAGVAAVPKGQAEAAYAIGMRKTQVMTIVLLPQAVKVMLPAMISQMVVALKDTSLGYAVAAPGLTRVGQQIYREFHNQVPTAIVLAVLYVGLNLLLTLLATWIQKKFVGEKKIDVVAVAAGIDKNRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZ74</accession>
    <name>A0A0Q8VZ74_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Succinate-semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">gabD2</name>
        <name evidence="6" type="ORF">ASE19_00105</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896858.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59792">
        <property type="protein sequence ID" value="KRC59792"/>
        <property type="gene ID" value="ASE19_00105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="293754at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="49"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC59792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="542" mass="58616" checksum="5DC57D9410AB5B2E" modified="2016-01-20" version="1">MSEAISGSGGSEGPVVEGPKDPEHDPRASYALEPEYVARLTDRILATTGTTAQVHSPINGAPVANIPQSSEDDVAEAFRRARVAQAAWARVSIDERARILHRLHDIVLDRQAEIMDLIQLESGKARKHAFDEPLHIALTARYYARTAHKHLDTERRPGVVPVLTKVELNRVPKGVVGIISPWNYPFTMALCDGLPALLAGNAVVTKPDAQTMLSALLGAQMLEDAGFPRDLWQVVAGPGRQLGTPIIQRADYICFTGSTATGKIIAQQAAERLIGCSLELGGKNPILVLRDADIERAAEGAVRACFSNAGQLCVSTERMFVADAVYDRFVERFVARTKAMSLGASMDWDADMGTLISADQLETVSAHVDDAVAKGARVLAGGKARPDLAPYYYEPTILEGVTPEMTCFANETFGPVISIYRFHDEADAIARANDGDYGLNGSVYTRDTDRGRAVARQIKCGTVNVNEAFGATFASIDAPMGGMRESGMGRRQGSEGIHRYTETQSVGTQRLLRFGPMFGMSDEGYAKMMTASLRLMDKLGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W165</accession>
    <name>A0A0Q8W165_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">XshC-Cox1 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00080</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896862.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59479">
        <property type="protein sequence ID" value="KRC59479"/>
        <property type="gene ID" value="ASE19_00080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1879870at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003777">
        <property type="entry name" value="XdhC_CoxI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027051">
        <property type="entry name" value="XdhC_Rossmann_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13478">
        <property type="entry name" value="XdhC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02625">
        <property type="entry name" value="XdhC_CoxI"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="XdhC_CoxI" evidence="1">
        <location>
            <begin position="11"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="XdhC_CoxI" evidence="1">
        <location>
            <begin position="117"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="XdhC_C" evidence="2">
        <location>
            <begin position="204"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="372" mass="39238" checksum="0BB00BAEAB593B28" modified="2016-01-20" version="1">MREVLPQLLAWWEAGETVGMGTVVATFRSAPRPPGASMLVGPDASAVGSVSGGCVEGAVYDLAQEVTGSGVPQLHRYGVSDDDAFAVGLTCGGILDVYVEKVSRETFPELGEIAADIDAGRPVAVATVVEHPDPSYVGRRVVVRPDTAATGSLGSDRIDDAVRDDALGLLASGHHGTLSYGPDGERRGEGMRVFVWAFAPAPRMLVFGAIDFAAAVARVGAFLGYRVTVCDARPVFATTSRFPGADEVVVDWPHRYLAAEQEAGRIDGRTVITVLTHDPKFDVPLLEVALRLPAVGYVGAMGSRRTHDDRTDRLREAGLGEEELARLHSPIGLDLGARTPEETAISIAAEIVAGRWGGSGEPLAERAGRIHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM78</accession>
    <name>A0A0Q8UM78_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase</fullName>
            <shortName evidence="3">GMPMT</shortName>
            <ecNumber evidence="3">2.4.99.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">(1-&gt;4)-alpha-D-glucan:maltose-1-phosphate alpha-D-maltosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">glgE</name>
        <name evidence="5" type="ORF">ASE19_19810</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1-&gt;4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>[(1-&gt;4)-alpha-D-glucosyl](n) + alpha-maltose 1-phosphate = [(1-&gt;4)-alpha-D-glucosyl](n+2) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:42692"/>
            <dbReference type="Rhea" id="RHEA-COMP:9584"/>
            <dbReference type="Rhea" id="RHEA-COMP:10183"/>
            <dbReference type="ChEBI" id="CHEBI:15444"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:63576"/>
            <dbReference type="EC" id="2.4.99.16"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2 3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the glycosyl hydrolase 13 family. GlgE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.99.16" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895896.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46120">
        <property type="protein sequence ID" value="KRC46120"/>
        <property type="gene ID" value="ASE19_19810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1573900at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016758">
        <property type="term" value="F:hexosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030979">
        <property type="term" value="P:alpha-glucan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02124">
        <property type="entry name" value="GlgE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026585">
        <property type="entry name" value="GlgE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021828">
        <property type="entry name" value="GlgE_dom_N/S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006047">
        <property type="entry name" value="Glyco_hydro_13_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10357:SF203">
        <property type="entry name" value="PTHR10357:SF203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11896">
        <property type="entry name" value="DUF3416"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00642">
        <property type="entry name" value="Aamy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aamy" evidence="4">
        <location>
            <begin position="205"/>
            <end position="544"/>
        </location>
    </feature>
    <feature type="region of interest" description="Maltose 1-phosphate binding" evidence="3">
        <location>
            <begin position="538"/>
            <end position="539"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="3">
        <location>
            <position position="398"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="3">
        <location>
            <position position="427"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="263"/>
        </location>
        <ligand>
            <name>alpha-maltose 1-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:63576"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="328"/>
        </location>
        <ligand>
            <name>alpha-maltose 1-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:63576"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="363"/>
        </location>
        <ligand>
            <name>alpha-maltose 1-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:63576"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="399"/>
        </location>
        <ligand>
            <name>alpha-maltose 1-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:63576"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="3">
        <location>
            <position position="484"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="677" mass="74204" checksum="8CECAF3AC5C9A5B7" modified="2016-01-20" version="1">MVGRIPVIDVKPVLETGPAEGPLPAKASVGEPFPVSATVFREGHDRLGAEVVLVGPDGRRRPPVRMAPRPAVDRYSVDRYDAWVTPDAPGSWAFEIHSWSSPLGTWFHDAGIKIRAGVDVELMFTEGRLLVERVLAGGGLTKAEQATLKAAGAAAGDTTRPVEARLAQLESPEVVATLEAHPLRDLLTVTGPFPVFVDRPAARFASWYEFFPRSEGATYDRRTGEVVSGTFATATERLPAVAAMGFDVLYLPPIHPIGEVNRKGPNNAVLPDGEPTPDDWPGSPWAIGSRHGGHDAIHPDLGTFQDFDAFVAAANAQGLEVALDLALQCAPDHPWVAAHPEWFTTRADGTIAYAENPPKKYQDIYPVNFDNDPGGIAAEVLRVVRLWMAHGVRTFRVDNPHTKPVAFWQWLLAEVRRTDPDVVFLSEAFTKPPMMQTLGAIGFHQSYTYFTWRTEKVDIEDYLREVSQESAHRVRPNFFVNTPDILHEFLQYGGPGAFRIRAALAALSSPLWGMYAGYELGEHVAVRPGSEEYLDSEKYQVRVRDWAAATAPGTVGADLTAYVTMLNTVRRAHPALQLLRNLTVHRTDSEHILCFSKVAALPDGSSDRVIVVLNLDPHQPRETMVHLDLAALGLAPHSSYAVHDEATGEDWTWGEHNYVRLAPAQPAHILVVKGAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMM1</accession>
    <name>A0A0Q8UMM1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ABC transporter ATP-binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_20465</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Part of an ABC transporter complex. Responsible for energy coupling to the transport system.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896000.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46229">
        <property type="protein sequence ID" value="KRC46229"/>
        <property type="gene ID" value="ASE19_20465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1752365at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006824">
        <property type="term" value="P:cobalt ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03225">
        <property type="entry name" value="ABC_cobalt_CbiO_domain1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015856">
        <property type="entry name" value="ABC_transpr_CbiO/EcfA_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005876">
        <property type="entry name" value="Co_trans_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01166">
        <property type="entry name" value="cbiO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="1 3 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="5"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="256" mass="27508" checksum="D5122CE2641B20A3" modified="2016-01-20" version="1">MTPTLDLRGVAFAYPDGHQALFGVDLHVHPGERVALLGPNGAGKTTLVLHLNGILSAESGHGEGSVAVSGLPVTKKNLLEIRRRVGIVFQDPDDQLFMGSVRADVAFGPANLGLKGAALEKRVMDALEQVGMAAYADRPPHHLSFGQRRRVAVATVLAMEPEILVLDEPSSNLDPASRRELADILRGLDVTLLMVTHDLPYALELCPRSVVLSGGRVVADGRTYDVLTDDALMRAHRLELPWGFDPRTVPVDSLPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN49</accession>
    <name>A0A0Q8UN49_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Polyketide cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20325</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895979.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46207">
        <property type="protein sequence ID" value="KRC46207"/>
        <property type="gene ID" value="ASE19_20325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1564097at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014488">
        <property type="entry name" value="UCP017371"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017371">
        <property type="entry name" value="UCP017371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="145" mass="15030" checksum="FB8DC2DBA06C4590" modified="2016-01-20" version="1">MAQVTATVDATVPAPPAEVLAALSDYVDVRPAILPASYSSYQVLENGVGDGTVATWRLQATKKRVRHVIADVAVTPDAVVETDRNSTMVTTFAVTSDGAGSKVTATTTWQGAGGIGGFFEKTFAPLGLGRIHGELLANLAARFPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN87</accession>
    <name>A0A0Q8UN87_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21795</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896228.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46459">
        <property type="protein sequence ID" value="KRC46459"/>
        <property type="gene ID" value="ASE19_21795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="57"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="411" mass="44051" checksum="68334CE88A11C4EF" modified="2016-01-20" version="1">MTTTSKMKRAWERTKTVPGLGRDVTALVLLFVLGTVTTSVVLINQRYDWPWQDKFVFQADFTETPGISPSNGQEVRIAGVTVGSITEAEVTKEGLARLTLSLEPGHTVYKDTQLVLRAKTPLNDMYVEMSEGSPDAGKLDDGDLVSVDQTENPVQVDRVVQNLDEDARSGLASLLQESDVALANSPKHLGPGLDATDQVLADLKPVVNALDGRRKQIRLLVTALSQVASATGGDEARLARITNSLADTLSVISTRDDELTQALATLPGFVSELKGATRNVTSLSQQLDPTLDAVKGASDSLPTALSRLAELAENLDETAKIATPVVRQARPVLDDLRPVVPRYDAALSEASVVTGRLGYLTKTIVDYRDDLAAFVYNTTSIFSLGDANGGILRGQAQVSPESLPFVIGKVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNQ0</accession>
    <name>A0A0Q8UNQ0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent Clp protease adapter protein ClpS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">clpS</name>
        <name evidence="3" type="ORF">ASE19_20610</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Binds to the N-terminal domain of the chaperone ClpA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ClpS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46618">
        <property type="protein sequence ID" value="KRC46618"/>
        <property type="gene ID" value="ASE19_20610"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030163">
        <property type="term" value="P:protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00302">
        <property type="entry name" value="ClpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022935">
        <property type="entry name" value="ClpS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003769">
        <property type="entry name" value="ClpS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014719">
        <property type="entry name" value="Ribosomal_L7/12_C/ClpS-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33473">
        <property type="entry name" value="PTHR33473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02617">
        <property type="entry name" value="ClpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54736">
        <property type="entry name" value="SSF54736"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ClpS" evidence="2">
        <location>
            <begin position="6"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="81" mass="9384" checksum="5A672347AEFB9E34" modified="2016-01-20" version="1">MTLADTPWVTLVWNDPVNLMSYVTFVFQKHFGYGKKKAEKLMMEVHEDGRSVVSTGTREEMERDVQAMHEYGLWATLSKAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UTF8</accession>
    <name>A0A0Q8UTF8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895954.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46179">
        <property type="protein sequence ID" value="KRC46179"/>
        <property type="gene ID" value="ASE19_20155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="22"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="65" mass="7169" checksum="DE352AE6740B7E8A" modified="2016-01-20" version="1">MAKALIGHLNSDLRDPRLALENARLRNRVAELESLVLRLSEENDKLMSARAAEILTGDAAEMQPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU83</accession>
    <name>A0A0Q8UU83_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Cobalamin biosynthesis protein CobD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">cobD</name>
        <name evidence="11" type="ORF">ASE19_17420</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cell membrane</location>
            <topology evidence="2 10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the CobD/CbiB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893120.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48715">
        <property type="protein sequence ID" value="KRC48715"/>
        <property type="gene ID" value="ASE19_17420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2029688at2"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015420">
        <property type="term" value="F:ABC-type vitamin B12 transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048472">
        <property type="term" value="F:threonine-phosphate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00024">
        <property type="entry name" value="CobD_CbiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004485">
        <property type="entry name" value="Cobalamin_biosynth_CobD/CbiB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34308">
        <property type="entry name" value="PTHR34308"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03186">
        <property type="entry name" value="CobD_Cbib"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00380">
        <property type="entry name" value="cobD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 10" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="50"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC48715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="308" mass="32174" checksum="8861CF54ECF0D40E" modified="2016-01-20" version="1">MLRARAAGLLLGYAADRLLADPRRFHPVAGFGQVAAALERRTWRDERGAGVVHVAVLVGGAVVVGATAQAVVRRPLPQALLTAAATWTVLGGTSLDREAAAVSRLLAEDRLVDARVQLTHLVGRDTTQLSPQEVTRATLESLAENTSDAVVAPLVWGAVAGVPGLLGYRAANTLDAMVGHRSVRYERFGWAAARFDDLLNLPGSRLTAALATALGPDRAGAARSWRRDAAGHPSPNAGPVEAAFAGALGIRLGGTNDYAGRIEHRAVMGDGPLPDRSDLEQARRLANRVGIGAALVAAGIAVVRSSRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUG6</accession>
    <name>A0A0Q8UUG6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18045</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893222.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48821">
        <property type="protein sequence ID" value="KRC48821"/>
        <property type="gene ID" value="ASE19_18045"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="8"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="212" mass="23120" checksum="6898001B3C3C3C22" modified="2016-01-20" version="1">MARRKDQAARREHLIAATLETIAAHGLAGATMKNIAEAADISPRLVAYYYPELESLIEAAHQAATDRYYWSRQRDIEGDLSPTDKLARLLYSGLPRGKDLLLSQVLDEISVSASRSPMHATLMTLLFDREVSLYTAVLEVGAALGTFTLTDAADVIARNFVALEDALGLHLLARNSSLTLERAEQQLASYAFSATGVRVLPQAPAEVAPKRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUJ6</accession>
    <name>A0A0Q8UUJ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893241.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48840">
        <property type="protein sequence ID" value="KRC48840"/>
        <property type="gene ID" value="ASE19_18140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1719670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005031">
        <property type="entry name" value="COQ10_START"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03364">
        <property type="entry name" value="Polyketide_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Polyketide_cyc" evidence="1">
        <location>
            <begin position="10"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="153" mass="17390" checksum="C13E799F330185E1" modified="2016-01-20" version="1">MTQIQESIDVDVPVRTAYDQWTQFESFPQFMSGVESITQLDDKRLHWVTNIAGVEREFDAEITEQHPDERVAWTSTGGDTKQAGVVTFHRLDEGRTRVMAQIDWQPSGLVEKVGSAVNIDQHRVKGDLEKFKEFIEERGHETGAWRGDIDAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUL5</accession>
    <name>A0A0Q8UUL5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18325</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893276.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48875">
        <property type="protein sequence ID" value="KRC48875"/>
        <property type="gene ID" value="ASE19_18325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="62"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="127"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="200"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="249"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="273"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="364"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="395"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="448"/>
            <end position="469"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="681" mass="72201" checksum="A509F4D18781C909" modified="2016-01-20" version="1">MAEGHRTEPPTTRVARRAFVVGIVGLPLWWLVGVASLVPLLVVVPMAWDLWARRRMLVPPHFAWWLLFLLWVLLGLGTLWSTAPGAVDADGGTRILVFGFRLSWYVGCSILLLWIGNTPASLLPDRLVHRVFASVFVVAVIGGVVGVSSPELTVTTLAERVLPHQLTANEFVHTLVSAEVADVQEVLGDPEPRPKAPFPYTNTWGSVLALSLVFFVAAMASAPRKWRWCAAPVVAAAAIPVVMSLNRGLWIALGAAAVGLLVLAALRRNPVALTGLVATVIFAGVALTSTPLGDTVQSRIDHPHSNDRRSQLLVATVSSMTEGSPAVGFGSTRDTAGTFESIAGGSTPDCAACGVPPLGTQGQLWLLLFSQGWVGAVLFLGFFVLVLARVVRCRDVSTTVATFVVGIFLLQMTVYDTLGLPMLLVMAAVGLAWRQEGRSHRLPRVDRTAVLVVAGVASTGALLGVLASATSDAHLASTVAVGLTPTPTYLDVGEEAAALEKDSSAAVPTTSSVDTEASLLLSERALSRAGARSGVRTSDLRDDVEVTAPPLSAVVEMTVTTPTPQDPSPAARAVAEEYLHERQEFLDGRRADLVARLRTSLAATDPLDPAWTTSRQYLRSAIDHLTTHRPEAGRVLRVGEVHRLAPDRSVPVTSGLALGVLVGLAGVRLARAGRRSSAWTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV01</accession>
    <name>A0A0Q8UV01_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Adenine phosphoribosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19275</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49030">
        <property type="protein sequence ID" value="KRC49030"/>
        <property type="gene ID" value="ASE19_19275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1532478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="1">
        <location>
            <begin position="53"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="181" mass="19571" checksum="689C90CAC2C7F8F2" modified="2016-01-20" version="1">MSAVQHHLRARFRWIGDKYDDGGRADLTGWWRDPVVLSLLGPALAGVVPSAAEATVVLAPQSRGTLLGSLVAAHLGVGLVELRKEPGTAADSDAWRTRTTPPDYRDRQLVMGFRRALVRSGDRVLFVDDWIATGGQALTAKALVDDTGATWLGASVIVDGLETPSYRRPLGLRGLLHLRDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV30</accession>
    <name>A0A0Q8UV30_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893463.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49061">
        <property type="protein sequence ID" value="KRC49061"/>
        <property type="gene ID" value="ASE19_19435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="49035at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="733" mass="71479" checksum="2323D6B176BB2D82" modified="2016-01-20" version="1">MTTMKRFATTSRRRRPAPARHRGHGRAASTARRTVRPGLAVALVLTVGLSLGGVAAAFFTSDGTGAGTVTTGTLEAPTDVTATSTPGTGDVDVSWTAPTSGIAPDGYRVRRVPASGPAVLVCGTSASTTIAGTHCTDEGVPVGSHTYVVTAVQASWTAVATASDAVVVGQVAQAITFTSSPTSPTYGGPSYTVTADGGASGNPVTFGSDSPSVCTSTGTHGATITFVGAGTCTITAHQAGSTYYSAAPAAQQAFPVAKAAQAISFTSTAPTTAVVGSSGYHPAATGGGSGNPVMLTINPATTANCSISSGVVSYLKAGTCTIDADQAGDANHAAAPQVQQSFAISPAAQAITITSTPPADAKVGDTYTLTATGGGSGNPVTFASTTPGVCTSTGTRGATITFVAAGTCSVTADQAGNADYLAAAQVGQSIGVTRKAQAITNISLPTSPTYQGGYTVTATGGGSGNPVTFASTTPAVCTSSGTNGATISFVGAGSCTITADQSGNGTWAPAPQASVTFTVAKAAQTVSFSPVLTANAGTTATLTATASSGLSVTFSTTSAPAICTVSGSTVTYVGAGSCQLTATQAGNANYLSASSSATVAVSGDSLAPTITLVEPGNETGTWASISCTGAAGKICVTATDNVGVTSVTIKLTKSNGRCWNGGTGSSLDATFCGTPIGLSLVSGRWVTANSLTVAGNSGAGSFTAGNTDYTLEVRVSDGTNTTTTSYAFRVTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVU7</accession>
    <name>A0A0Q8UVU7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">4-hydroxy-2-oxovalerate aldolase</fullName>
            <shortName evidence="7">HOA</shortName>
            <ecNumber evidence="7">4.1.3.39</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">4-hydroxy-2-keto-pentanoic acid aldolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">4-hydroxy-2-oxopentanoate aldolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_19520</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>(S)-4-hydroxy-2-oxohexanoate = propanal + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:36003"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:17153"/>
            <dbReference type="ChEBI" id="CHEBI:73142"/>
            <dbReference type="EC" id="4.1.3.43"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="6">
            <dbReference type="Rhea" id="RHEA:36004"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(S)-4-hydroxy-2-oxopentanoate = acetaldehyde + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:22624"/>
            <dbReference type="ChEBI" id="CHEBI:15343"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:73143"/>
            <dbReference type="EC" id="4.1.3.39"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the 4-hydroxy-2-oxovalerate aldolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.3.39" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49135">
        <property type="protein sequence ID" value="KRC49135"/>
        <property type="gene ID" value="ASE19_19520"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008701">
        <property type="term" value="F:4-hydroxy-2-oxovalerate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019439">
        <property type="term" value="P:aromatic compound catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07943">
        <property type="entry name" value="DRE_TIM_HOA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01656">
        <property type="entry name" value="HOA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017629">
        <property type="entry name" value="4OH_2_O-val_aldolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012425">
        <property type="entry name" value="DmpG_comm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035685">
        <property type="entry name" value="DRE_TIM_HOA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07836">
        <property type="entry name" value="DmpG_comm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03217">
        <property type="entry name" value="4OH_2_O_val_ald"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0058">Aromatic hydrocarbons catabolism</keyword>
    <keyword evidence="5 7" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 7" id="KW-0464">Manganese</keyword>
    <keyword evidence="2 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="8">
        <location>
            <begin position="19"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="27"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="181"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="210"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="212"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="301"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="7">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC49135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="356" mass="37877" checksum="8DE16211BADF25D4" modified="2016-01-20" version="1">MTRTWSGTHGDEPFGRLDLRLTDTCLRDGSHHKRHQFTGQEVEDIVRALDESGVPVIEVTHGDGLGGSSFNYGFSRTPEQELIKIAAETAKRAKIAFLMLPGLGTKDDIRAAQDNGGQICRVATHCTEADVSIQHFGLARELGLETVGFLMMSHTQSPEILAKQARIMVDAGCQCVYVVDSAGALIMEQTADRVAAVVAEIGSQADVGFHGHENLGLGVSNTVIAARAGATQIDGSVRRFGAGAGNTPLEAFVGVCDKLGWTTGVDFLKIVDASEDVIKPAMPEECQLDRMTLMMGYAGVYSSFLKHAGNAAERFGVSGAQILLEAGKRKLIGGQEDQLIDIALQLKAAQDAPVGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWZ4</accession>
    <name>A0A0Q8UWZ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_21110</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896108.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46337">
        <property type="protein sequence ID" value="KRC46337"/>
        <property type="gene ID" value="ASE19_21110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1108236at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="28"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="65"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="126"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="155"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="189"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="224"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="254"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="294"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="329"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="357"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="398"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="511"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="29"/>
            <end position="536"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="550" mass="56801" checksum="0A1DDA9A18835AB4" modified="2016-01-20" version="1">MTDVESLDPAGTTSSAEAEVKPAKHAGLALVLILTAQLMVVLDSTIANIALPYIGRDLDISQANLTWIVTGYALAFGGLLLLGGRLGDLYGRRRLFMIGLSTFSVASLLGGLAANEGLLLASRALQGVGAAMAAPAALALITTTFAAGPARNRAMAAYATMSGVGAAIGLILGGWLTGLDSFVGLDVEGWRMTFLINVPIGLVAAFAVPRVLAESEQHPGEMDIPGAITGTLGLLGIVFGLSRAGEEAYGWDHAQTITSLVAGVVLLVAFAVIESRVAHPLLPVRIFASRTRATSFVAMMIAPAAMFAMFYFLSLFIQQIMGFSPLEAGFAFLPFSFGIVIGAGLASNLVARIDARFLAGTGTLLAATALFMFSRIPVDESPTAVLKAMTDGGADINYWTHVFPFIILMAIGMGLVFVPMTLTAVHHVRAEDSGIGSGVLNTMQQVGGALGLATLSTVALHFTNGQASDVAKPMADAIVAGGGDPAAVVPGSDLTFLEAAIFNSSFPEGAVHAFLVASILMLTASAVIWAFLNVKHTELATDAPEGVHVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXT8</accession>
    <name>A0A0Q8UXT8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cytochrome bc1 complex Rieske iron-sulfur subunit</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Cytochrome bc1 reductase complex subunit QcrA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_15820</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Iron-sulfur subunit of the cytochrome bc1 complex, an essential component of the respiratory electron transport chain required for ATP synthesis. The bc1 complex catalyzes the oxidation of menaquinol and the reduction of cytochrome c in the respiratory chain. The bc1 complex operates through a Q-cycle mechanism that couples electron transfer to generation of the proton gradient that drives ATP synthesis.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893553.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50085">
        <property type="protein sequence ID" value="KRC50085"/>
        <property type="gene ID" value="ASE19_15820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1632945at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014349">
        <property type="entry name" value="Rieske_Fe-S_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005805">
        <property type="entry name" value="Rieske_Fe-S_prot_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10134">
        <property type="entry name" value="PTHR10134"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00162">
        <property type="entry name" value="RIESKE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="12">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359528" description="Cytochrome bc1 complex Rieske iron-sulfur subunit" evidence="12">
        <location>
            <begin position="26"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="Rieske" evidence="13">
        <location>
            <begin position="68"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="32"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="34"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00015816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00029586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC50085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="161" mass="15469" checksum="82496BA8AEF58BF8" modified="2016-01-20" version="1">MTAPLTRRRALTGAATLGVGVPLLAACGDGGSTTADDPVTSSAPTTSVPTSAATTETTAGGSSAPATGGLVAAADVPVGGGVILTDEELVVTQPTAGEYKAFSAICTHQSCIVTSVTDNTIHCPCHGSSFSAEDGSVTGGPAPSPLAETAVKLSGDAVVKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY25</accession>
    <name>A0A0Q8UY25_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MerR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16215</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893620.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50152">
        <property type="protein sequence ID" value="KRC50152"/>
        <property type="gene ID" value="ASE19_16215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1677723at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00376">
        <property type="entry name" value="MerR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="35"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="243" mass="26865" checksum="3EF1D2579EA2C2BB" modified="2016-01-20" version="1">MVAAVARGEREPLLNIGQVLDLLRTDFEDISIPKIRFLESEGLIKPERTPAGYRKFSTSDIGRLRYILRMQRDHYLPLKVIGEHLDAMERGLEPPAPEPVVPTVPKVAIGSDGMPAPESFRRTDKLRLSRKELIKVAEIDEALLAQLEEFALITPSATGHYDTDALVIAQTASELADFGIEPRHLRGFRAAADREVGLIQQVVTPRRGRDAGAAARAEEQVSEIAALSVRLHATLVKAGLRRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY48</accession>
    <name>A0A0Q8UY48_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15725</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893537.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50068">
        <property type="protein sequence ID" value="KRC50068"/>
        <property type="gene ID" value="ASE19_15725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="275153at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018580">
        <property type="term" value="F:nitronate monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04730">
        <property type="entry name" value="NPD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004136">
        <property type="entry name" value="NMO"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03060">
        <property type="entry name" value="NMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NMO" evidence="1">
        <location>
            <begin position="3"/>
            <end position="354"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="368" mass="38915" checksum="B4EDDDEF1F0A30B5" modified="2016-01-20" version="1">MRTPLCDAFGIEYPIFAFTPSEHVAAAVSRAGGLGVLGCVRFNDPDELDRVLTWMDENTDGKPYGVDVVMPMKVPTEGTSADLSTYIPDEHKKFVDETLLKLGVPPLPEGEGREGVLGWLHSMARSHVDVALQHRPVLIANALGTPPTDVIAECQAAGLKVAALAGAPKHAQSHVANGVDIIIAQGYEAGGHTGEIASMVLTPDIVDAVGPDVPVLGAGGIGSGRQIAASLALGSQGVWTGSIWLGTEEYRNLASNQGWETAFLRATSSDTVRTRVYTGKPARLLKTKWTEAWNEEGAPAPLPMPLQNLLVADAHNRINASGDPDVISMPVGQIVGRMNEVRPVAEVMADLVAEFEDTVKKLDGIAGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYI2</accession>
    <name>A0A0Q8UYI2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Aminopeptidase N</fullName>
            <ecNumber evidence="4">3.4.11.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Alanine aminopeptidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">Lysyl aminopeptidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">ASE19_16255</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Release of an N-terminal amino acid, Xaa-|-Yaa- from a peptide, amide or arylamide. Xaa is preferably Ala, but may be most amino acids including Pro (slow action). When a terminal hydrophobic residue is followed by a prolyl residue, the two may be released as an intact Xaa-Pro dipeptide.</text>
            <dbReference type="EC" id="3.4.11.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.2" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893627.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50159">
        <property type="protein sequence ID" value="KRC50159"/>
        <property type="gene ID" value="ASE19_16255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="771837at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042097">
        <property type="entry name" value="Aminopeptidase_N-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024571">
        <property type="entry name" value="ERAP1-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012778">
        <property type="entry name" value="Pept_M1_aminopeptidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001930">
        <property type="entry name" value="Peptidase_M1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014782">
        <property type="entry name" value="Peptidase_M1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027268">
        <property type="entry name" value="Peptidase_M4/M1_CTD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11838">
        <property type="entry name" value="ERAP1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01433">
        <property type="entry name" value="Peptidase_M1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00756">
        <property type="entry name" value="ALADIPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63737">
        <property type="entry name" value="SSF63737"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02412">
        <property type="entry name" value="pepN_strep_liv"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="15" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M1" evidence="13">
        <location>
            <begin position="233"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="domain" description="ERAP1_C" evidence="14">
        <location>
            <begin position="526"/>
            <end position="811"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012564"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00015611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00031533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF11838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC50159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="818" mass="88556" checksum="A80A6BE0CB898C97" modified="2016-01-20" version="1">MSSENVVVSLTRAEAEHRAAALTVASYDVELDLSVADDVFASRTTIRFASTAAHTFVEVKPRALHRLTLDGADLSPDLLAGGRVPLDLSAGDHELVVEATMGFRNDGEGLHRSVDPADGRAYVYGMSFMDAAPSVFACFDQPDLKAPYTMRVTAPAEWLVRGNAPAREVGSEGAVRRWELGPTPPLATYFVTVVAGPYHLLDDEHDGIALGLSSRQSLARTLDREADELFTLTRQSFDELHRLFGVRYPFGDYHQAFVPEFNAGAMENPGCVTIRDPLLFESASTRADRSFRAALVAHEMAHQWFGNIVTPKWWDDLWLNESFAEYMGYRVIADATQYDDAWIHQSYARRVWGITADSRPTTHPVAGNPAEDALSALQNFDGISYARGSNVLRQLAHRLGDEAFLGGVREHFALHRFGNATMHDLFASWERAAGGAALSGFVQDWLLTPGPDVLTIDRAAGVVRRSSPASYPAERTHLLDVAVHRGGEWEAAPARLTSAETPLEVGDSPVLLDATEATWAVCPPDAVTMAALPALLPAMADPQLRATTWNSVRLALFDGAVTPAEVADLLVAAPPVEDTSDGVRGLLTWTFSNALMVAPEGTAERYHAAVRASLDRLDAGSELQLSAFRAALLSAGDVDQLGRWAAGEDLPDGIAPDTDLRWKALRRLAEIGGTDRAALDALLAADPSGTATVHHARAVASLPTPEAKAFAWARATGEVSVANYEIEAAGLGMWRPDQVGLTQRYADDYFAHLDEIVAAHQGWVQGVVVAAFFPITHLSPATVEAARAALERDLPGAVRRRLTDHLDELERRLAVIVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYZ1</accession>
    <name>A0A0Q8UYZ1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 10 14">Catalase</fullName>
            <ecNumber evidence="3 10 14">1.11.1.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">ASE19_19695</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <reference evidence="18 19" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Serves to protect cells from the toxic effects of hydrogen peroxide.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 14">
            <text>2 H2O2 = 2 H2O + O2</text>
            <dbReference type="Rhea" id="RHEA:20309"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="EC" id="1.11.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 10 12">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the catalase family. HPII subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.6" evidence="3 10 14"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895879.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46103">
        <property type="protein sequence ID" value="KRC46103"/>
        <property type="gene ID" value="ASE19_19695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1584770at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004096">
        <property type="term" value="F:catalase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042744">
        <property type="term" value="P:hydrogen peroxide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03132">
        <property type="entry name" value="GATase1_catalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1370.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018028">
        <property type="entry name" value="Catalase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024708">
        <property type="entry name" value="Catalase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024712">
        <property type="entry name" value="Catalase_clade2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043156">
        <property type="entry name" value="Catalase_clade2_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011614">
        <property type="entry name" value="Catalase_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002226">
        <property type="entry name" value="Catalase_haem_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010582">
        <property type="entry name" value="Catalase_immune_responsive"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041399">
        <property type="entry name" value="Catalase_large_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020835">
        <property type="entry name" value="Catalase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42821">
        <property type="entry name" value="PTHR42821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00199">
        <property type="entry name" value="Catalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06628">
        <property type="entry name" value="Catalase-rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18011">
        <property type="entry name" value="Catalase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038927">
        <property type="entry name" value="Catalase_clade2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00067">
        <property type="entry name" value="CATALASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01060">
        <property type="entry name" value="Catalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56634">
        <property type="entry name" value="SSF56634"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00437">
        <property type="entry name" value="CATALASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00438">
        <property type="entry name" value="CATALASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51402">
        <property type="entry name" value="CATALASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10 13" id="KW-0349">Heme</keyword>
    <keyword evidence="9 10 14" id="KW-0376">Hydrogen peroxide</keyword>
    <keyword evidence="8 10 12" id="KW-0408">Iron</keyword>
    <keyword evidence="6 10 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 10 14" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 10 14" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="16" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="16">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359546" description="Catalase" evidence="16">
        <location>
            <begin position="23"/>
            <end position="767"/>
        </location>
    </feature>
    <feature type="domain" description="Catalase" evidence="17">
        <location>
            <begin position="93"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="30"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="15">
        <location>
            <begin position="41"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="212"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="423"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="12">
        <location>
            <position position="427"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="434"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR038927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR038927-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR038927-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR038927-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU000498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="SMART" id="SM01060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="KRC46103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="767" mass="81990" checksum="A2D776D3B810097F" modified="2016-01-20" version="1">MTDAGKAARVIRKAVKSTVAQAAEAALAWVEDRGPGEVPGAPASKAPPLEEPTKPVDPLPPKPDQAGPDRRTATGAETLATPADVAQQGRFLTTSAGARLRDTDHSLKAGERGPTLLQDHHLREKITHFDHERIPERVVHARGAGAHGVFIGYGNAKPVCKAAFLARNVETPVFVRFSTVLGSRGSMDTARDTRGFATKFYTSEGNFDLVGNNMPVFFIQDGIKFPDVIHAGKPHPDREIPQAQSAHDTFWDFVSLHTEAQHHALWNMSDRGIPRSYRMMEGFGVHTFRTVNASGETALVKLHWKPRLGVHSLSWEEAQMLGGVDPDFHRRDLADAIEAGAYPQWELGIQVFADTPEQTFEGIDLLDPTKLVPEELAPVQAVGLLTLTANPTNYFAETEQVAFHVGNLVPGIDVTDDPLLQARLFSYVDTQLLRLGGPNFNQIPVNRPHAPVNDMLRDGFHQNAVHAGVAPYKPNSLDGGCPFFAGAAARDHAFVDVPVPVAGVKERGAPPSFDDHFSQARLFWTSMTPVEQQHIVLAYTFELSRCHEPSIRERQLRALANIDPVLCAEVATGVGLPAPEPSIPLAEPVPSAALSQLGGTWPAEGRTVGIVVGEETGQALADLRAASDAVRAAGAVPLVVAAHGGELGDGTRIDRTFGATRSVEYDAVVLVGSPPPAPDALPVRDTKAGEPAALLDPRVVLLVQECFRHAKAVGASGDGVGALPEVGISGEEPGVVVGEDAAEVVAEVLALLESHRVSERFAPAEVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZD4</accession>
    <name>A0A0Q8UZD4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative pre-16S rRNA nuclease</fullName>
            <ecNumber evidence="2">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_19200</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YqgF HJR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893419.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49017">
        <property type="protein sequence ID" value="KRC49017"/>
        <property type="gene ID" value="ASE19_19200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2075502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000967">
        <property type="term" value="P:rRNA 5'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16964">
        <property type="entry name" value="YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00651">
        <property type="entry name" value="Nuclease_YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005227">
        <property type="entry name" value="YqgF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006641">
        <property type="entry name" value="YqgF/RNaseH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037027">
        <property type="entry name" value="YqgF/RNaseH-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33317">
        <property type="entry name" value="PTHR33317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03652">
        <property type="entry name" value="RuvX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00732">
        <property type="entry name" value="YqgFc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00250">
        <property type="entry name" value="RNAse_H_YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="YqgFc" evidence="3">
        <location>
            <begin position="4"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC49017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="153" mass="16218" checksum="7EF6016617083FFF" modified="2016-01-20" version="1">MRRGVRLGVDPGDARIGVARCDPSGVLATPVETVRRGKGDLRRIHQLATAEEAVEIVVGLPRSLSGSEGPAAVKTRAFADRLARRVAPVPVRLVDERLTTVTATAMLRDQRKGAKQRAVVDQVAAVVILQQALDSERATGTAPGELVVPTAED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZW4</accession>
    <name>A0A0Q8UZW4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF1775 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_21230</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896130.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46359">
        <property type="protein sequence ID" value="KRC46359"/>
        <property type="gene ID" value="ASE19_21230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd08545">
        <property type="entry name" value="YcnI_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012533">
        <property type="entry name" value="YcnI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038507">
        <property type="entry name" value="YcnI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07987">
        <property type="entry name" value="DUF1775"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359563" description="DUF1775 domain-containing protein" evidence="3">
        <location>
            <begin position="32"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="225"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1775" evidence="4">
        <location>
            <begin position="35"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="187"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="251" mass="25457" checksum="0FD0B6B3B8129620" modified="2016-01-20" version="1">MQNRRFTLPTPVRVLGAGTAALGIVALSAGAASAHVSVSPNTTAAGGYAVLTFSVPHGCEGSPTKEVAIALPDDIVSVTPTVNPGWTIKKVTEQLADPIKDDDGNEITERTSQVVYTAKTPLEDGYRDTMELSLQLPDEEGKSLSFPVIQTCVKGQTAWNETAADGQDPETLEHPAPAFTITAATGEGHHGAASDDEADEADEADGHAEASDAGDDSDGSDGKGLAIGGLVAGVGGLALGGLALARSGKKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0N8</accession>
    <name>A0A0Q8V0N8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phosphate--nucleotide phosphotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_18860</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893365.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48963">
        <property type="protein sequence ID" value="KRC48963"/>
        <property type="gene ID" value="ASE19_18860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="953793at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008976">
        <property type="term" value="F:polyphosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006797">
        <property type="term" value="P:polyphosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016898">
        <property type="entry name" value="Polyphosphate_phosphotransfera"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022300">
        <property type="entry name" value="PPK2-rel_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022488">
        <property type="entry name" value="PPK2-related"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03976">
        <property type="entry name" value="PPK2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028756">
        <property type="entry name" value="PPK2_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03709">
        <property type="entry name" value="PPK2_rel_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PPK2" evidence="3">
        <location>
            <begin position="37"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="286" mass="31917" checksum="32EE7DD44DD839D8" modified="2016-01-20" version="1">MSAFPVSDLTSHLRIAPGPVDLAAIETDAAPGFDGGKSEGEEALAALAPELEELQERLFADGKSGGRRSILLVLQGMDTSGKGGTLRSTVGLMDPQGVRITSFKAPTEDERKHDFLWRITKALPPVGLVGVFDRSHYEDVLIARVRELASPDEIRRRYGAINDWEADLAEQGTTVIKCMLHISAAEQKKRLLARLDDPTKYWKYNPGDVDERELWPAYQEAYEIAIERTNTDGAPWHVIPADKKWYRNLAIGSLLLDALRSFDLSWPAADFDIEHEKQRLVDELPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2D1</accession>
    <name>A0A0Q8V2D1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15930</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893572.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50105">
        <property type="protein sequence ID" value="KRC50105"/>
        <property type="gene ID" value="ASE19_15930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1956639at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="132" mass="14050" checksum="96CB4E4D67BB735C" modified="2016-01-20" version="1">MAEELSTGWGRALVFVYGVFAVAATGRSTVQLGEDAGKLPYWLSLVAAVLYLLATTCLLVGGRVGWTVARAAVSIELVGVLGVGVWSYLDTGLFHDKTVWSHFGQGYGFLPLVLPFAGLAWLRHTRPPSGAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2J7</accession>
    <name>A0A0Q8V2J7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16310</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893637.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50169">
        <property type="protein sequence ID" value="KRC50169"/>
        <property type="gene ID" value="ASE19_16310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1972558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="90" mass="9816" checksum="0F6BF129C6E3F4D6" modified="2016-01-20" version="1">MIELKGLNGESIVFDGTTVAKFRHNGLDEAARNPVSSYREVQVRHKPGKRGKEGRYDVMVVLASFMSISVAEEAKGPLDELVAALEATRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3X3</accession>
    <name>A0A0Q8V3X3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Spermidine/putrescine ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_18025</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893218.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48817">
        <property type="protein sequence ID" value="KRC48817"/>
        <property type="gene ID" value="ASE19_18025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1200451at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="16"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="48"/>
            <end position="55"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC48817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="382" mass="41564" checksum="4DBBC2BB8D5A4FBC" modified="2016-01-20" version="1">MSLAADSAISGGARNLRLTALTKEFATFTAVRSLDLEVPAGSFFALLGPSGCGKTTTLRMVAGLETPTSGSIHLGGDEITWEKPYRRPVNTVFQNYALFPHLDIHENVAFGLRRRGVKDVDQQVREMLELVELEGQARKKPPQMSGGQQQRVALARALINRPEVLLLDEPLGALDLKLRRAMQIELKRIQTEVGLTFVHVTHDQEEAMTMADTIAVMNGGVIEQMGSPTELYENPRTTFVANFLGQSNLIAGTVTSGEGDVVRVDMHGTQVSIPADRAHTRSGNGWIGIRPEKVLVAPAGEPIDAPGNHLPGGVITDVSFVGVSTQYLVQMPWGQELMAFEQNTGRRAILEHGTKVDLSWRPEFAFLLPADQDVNAGALEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V463</accession>
    <name>A0A0Q8V463_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sulfurase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19485</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893471.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49069">
        <property type="protein sequence ID" value="KRC49069"/>
        <property type="gene ID" value="ASE19_19485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1877633at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005302">
        <property type="entry name" value="MoCF_Sase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011037">
        <property type="entry name" value="Pyrv_Knase-like_insert_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03473">
        <property type="entry name" value="MOSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50800">
        <property type="entry name" value="SSF50800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51340">
        <property type="entry name" value="MOSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MOSC" evidence="1">
        <location>
            <begin position="24"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="17063" checksum="38D4A8BBE0E66D39" modified="2016-01-20" version="1">MRDGGGTPVVAGIHVAKATRLPMQAKDTVEVEAGRGIVGDRYHGTRHRHVTVQSRETLDEAARVFGREVASELTRRNVTVSHGVVPRDPGARIRVGEVLLEVVRVAAPCKLLDDTIGAGAQEALRRRAGTVFRVLEGGTIRVGDPVDLGVDLSSPVPRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4Y6</accession>
    <name>A0A0Q8V4Y6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17645</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893157.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48754">
        <property type="protein sequence ID" value="KRC48754"/>
        <property type="gene ID" value="ASE19_17645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1810915at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="126" mass="13328" checksum="FC1D26623DA5544D" modified="2016-01-20" version="1">MVSESRAAVVKLLKARGAKARRGHLRIAVGDLFWYVDPRAEGVGRGAQLLLEVGCWVPEVAPEPDGGAVDCPLLVDVALADPVADTAKLLDVITSIGDLPTLGRRLDELPGALVDRVLRARLDGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5E8</accession>
    <name>A0A0Q8V5E8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_18755</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893348.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48946">
        <property type="protein sequence ID" value="KRC48946"/>
        <property type="gene ID" value="ASE19_18755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1846332at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045830">
        <property type="entry name" value="AraR_wHTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19368">
        <property type="entry name" value="AraR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="4">
        <location>
            <begin position="2"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="231" mass="25348" checksum="F4BF0E03A36E2A3E" modified="2016-01-20" version="1">MSTHPPFAVAVDLAIFTIRDGSLAVLLVERGEDPFAGSWALPGGFVEPDEDAEQAAWRELREETGVDRFPGHLEQLRTYSAPDRDPRMRVVSVAHVALAPDLPEPQAGTDAADARWWVVDDLLEGDDGPTLAFDHHQILVDARERVRAKLEYTTLATEFVAEPFTLPELRRVYAAVWGTPPDLGNFRRKVLGTEGFVVPTDAREGGSEGGRPALLYRRGSATVVQPPMARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5J7</accession>
    <name>A0A0Q8V5J7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">NAD-dependent succinate-semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_09175</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894540.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52603">
        <property type="protein sequence ID" value="KRC52603"/>
        <property type="gene ID" value="ASE19_09175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="384611at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="4">
        <location>
            <begin position="23"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="488" mass="50676" checksum="8A8FEBDAFFD69A67" modified="2016-01-20" version="1">MTSLDQIIARLAPEAGVLVGGEWLAGELGTYDVDDPADKRVLAAVGNGGAAQATAAVDAAAAAAAEWAATSPRQRSVVLHRTFELMHRDLEELAALICAENGKSAADARAEVGYAAEFFRWFAEEAVRIDGSYGSAPAGGVRTVVTRRPVGVAALITPWNFPAAMATRKIAPALAAGCTVVLKPAAETPLTAFAVARLLAEAGVPAGVVNVVPTTEPEAVVSTWLADPRVRKVSFTGSTGVGRHLLRQAADRVLNASMELGGNAPFIVTEDADVAAAVDGAMIAKFRGGGQACTAANRFYVHASVAEEFTAALSARVTALRVGRGADASTEIGPLIDGRAVDRVTSLVEDAVASGARVVARAEVPAELSGHFFPPTVVTGVAPDARLVREEIFAPVAPIITWTDEAELLALVNDSEMGLAAYLYAGELKRALQLAEQVDAGMIGINRGLVSDPAAPFGGVKQSGIGREGAHEGIEEYQETQYFSVDWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6C5</accession>
    <name>A0A0Q8V6C5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10530</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894771.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52838">
        <property type="protein sequence ID" value="KRC52838"/>
        <property type="gene ID" value="ASE19_10530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1970102at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046198">
        <property type="entry name" value="DUF6230"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19741">
        <property type="entry name" value="DUF6230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="273" mass="28126" checksum="EDBE72F74737C2F5" modified="2016-01-20" version="1">MTGRRGRADVLDRVRRAAATRSTAMVDRAEVHRGTRRRALVPLAGGLGALVAMFQLVSSNVLAVNFTTANQEFQLYSNYLQGAQAAGFLSTNDTSTGEDNGVAELGIRSAKLAGLCAIAHENVPVVGEVTLMILAGVPVRSSFATGANTTTDGAGNPLTYDADGLLTGGNHITASNLFINSRSLNGFGNLISGMNLGQSADTVDTTAGITWPGGQTQPDPGDFGLTVDRINVGGLGGDTYGINLQGAITLPNLKIKVVKGHKTQADCPSQAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6E7</accession>
    <name>A0A0Q8V6E7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CoA-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10895</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894838.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52906">
        <property type="protein sequence ID" value="KRC52906"/>
        <property type="gene ID" value="ASE19_10895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="969868at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="389" mass="41335" checksum="934ECC6F8ED8E574" modified="2016-01-20" version="1">MSAPLADVLVLDLTRALAGPHAAMMLGDLGARVIKVESPGGDDTRGWGPPFAVPEEGSRESTYFLSANRNKESITLDLKDPADQEVLAQLITRADVLMENFRVGVLDRLGFPVSRLHELNPRLVVLQITGFGHDGPEAHRSGFDQIAQGEGGLMSLTGIAEPTKVGVPIADLLAGMNGAYGVVAALYERERTGRGRVVHTSLLAGMVGVHAFQGTKWTVAGEVPGLAGGHHPSIAPYGMWQTATGPVQIACGSEKLWQAFCAEFGLDADRPGLASNPERVANRAEVIALVDSLLADLSAEEALHRLDRAGVPAGRVRSLEEVYTWDQTLSQGLVLEVEHATLGPVRLPGPALRFDDNAYAGGRAEHVAPPTLGQHNESVREWLAADLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6I1</accession>
    <name>A0A0Q8V6I1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FBP_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10775</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894818.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52886">
        <property type="protein sequence ID" value="KRC52886"/>
        <property type="gene ID" value="ASE19_10775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1684141at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032330">
        <property type="entry name" value="EF-G-binding_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16571">
        <property type="entry name" value="FBP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FBP_C" evidence="1">
        <location>
            <begin position="8"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF16571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="17539" checksum="1CA4454E2504A16D" modified="2016-01-20" version="1">MSPLTEQEIRASFVNCSKGEAKRLNVPRDLADQPWDDLDFLGWRDPQSRTRGYLVAEHDGAPYGVVLRASDAGGNVPRKNLCSLCLTPHSAGGVALLVAPRAGKSGQNGNSVGTYICADLQCSLYVRGRKKTDMGRLPESLPMEQQVERLQANLGAFLARVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6P4</accession>
    <name>A0A0Q8V6P4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PHB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_16890</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the band 7/mec-2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893741.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50272">
        <property type="protein sequence ID" value="KRC50272"/>
        <property type="gene ID" value="ASE19_16890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1213601at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018080">
        <property type="entry name" value="Band_7/stomatin-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001972">
        <property type="entry name" value="Stomatin_HflK_HflKC_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00721">
        <property type="entry name" value="STOMATIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01270">
        <property type="entry name" value="BAND_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359757" description="PHB domain-containing protein" evidence="2">
        <location>
            <begin position="20"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="domain" description="PHB" evidence="3">
        <location>
            <begin position="20"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="307" mass="33436" checksum="2D7D4C6E91CA1A19" modified="2016-01-20" version="1">MVVLVVLILLLLFVITVVAKSIRVVPQAYAGIVERFGKYKETLPAGLNFVVPFIDKVHYMIDLREQVVSFPPQGAITEDNLTVDIDTVIFFQVTDPIAATYEISNYIQAIEQLTMTTLRNVVGGMDLEQTLTSRESINNGLSAVLDETTGRWGIKVKRVEIKGIDPPPSIKDAMEKQMRADRDKRAFILTAEGQRQSAILTAEGNKQAAILNAEGDREALILKAQADREAAILRAQGEGAAIETVFGAIHQGNPDQSLLAYQYLQMLPRIAEGDANKVWIVPSEIGRALEGLGSVLPQAGGDAAGPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Q0</accession>
    <name>A0A0Q8V6Q0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11740</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894984.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53054">
        <property type="protein sequence ID" value="KRC53054"/>
        <property type="gene ID" value="ASE19_11740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1317397at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="278" mass="29017" checksum="84C1348B834B18DE" modified="2016-01-20" version="1">MNHPAAVPLLLDDAAVFPPGNLPLAEAVVAHRAHRASWYADLVGPLVVPAAALDDLVDEGPLDVAVVAPLDQLATVLAWDVPGIRVVAVEVTLPSDLPADAVLAELGRRNSRLDEEASSSKREFHRPAGETPVFVEIPRDERRDAVIADLAGSSYRAKLRTGGVRADLYPDEAELAAAVVALTRAGVPFKATAGLHHALRNTDPETGFEQHGFLNLLAATAAAEAGAGVEDVAALLAIRDADRLPATTGSLLGSIGTCSITDPVDELTALGRLLEASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6V2</accession>
    <name>A0A0Q8V6V2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_12000</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895030.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53102">
        <property type="protein sequence ID" value="KRC53102"/>
        <property type="gene ID" value="ASE19_12000"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004075">
        <property type="term" value="F:biotin carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00289">
        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50979">
        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="6">
        <location>
            <begin position="1"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="5">
        <location>
            <begin position="113"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="21234" checksum="D72A37040474B164" modified="2016-01-20" version="1">MANRGEIAIRVCRGVRAAGYDPVVIYSRDDQGSLHASAAEYRHSLPGAGPAAYLDIDQVVDAAVTTGCTFVHPGYGFLSENADFARACEATGLTFVGPSSDVLDLFGDKAAARDLAGKSGVPVVPGKVIDTPADVAAFMKDAAGAPVLIKATAGGGGRGIRLVESVDEVDAAFRVCREEALVAFGSGELYVERFLAGRPRAPSSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Y8</accession>
    <name>A0A0Q8V6Y8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">FAD-linked oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11885</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895012.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53082">
        <property type="protein sequence ID" value="KRC53082"/>
        <property type="gene ID" value="ASE19_11885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1034540at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004017">
        <property type="entry name" value="Cys_rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02754">
        <property type="entry name" value="CCG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="4">
        <location>
            <begin position="42"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="975" mass="103916" checksum="6950071F49F7EC62" modified="2016-01-20" version="1">MREDDPGRDPGELVVDQLTSAGLEVDNSGHRLAAYSYDASNYRVRPLAVVFPRSVDDVVAVLAVCRGTRTPVVSRGGGTSMAGNAIGPGVVLDFSRHMHRILTVDEGAGTADVEPGVVLAALSREAEAVTGGRLTFAPDPSSRTRATVGGAVGNDACGNHSVRYGRMSDHVVELDLVTSDGSRLTAAAGGLRPTDPADRSSAERANKLNVRLATIARSNLATFRTELGRLSRQVSGYHLANLLPENGFDVARALAGSEGTCAVVVGARVRVVPKPLSALLVVLGYDDVVDAARDVETILEFDPAAVEGIDEEIVATMRLRRGPDAVVGLPAGSAFLYVELDGEHPDQVASHAEALLARLGGSGRLREGRLITDQAERTALWRVREDGAGLSYRPSSGGESWPGWEDSAVAVADLADYLTDFRELLSAHGLTGIMYGHFGAGCMHIRVTYDLRSERGRQVFRTFTREAATLVVRHGGTLSGEHGDGRARSELLPIMYSSQAMAAFEEFRLAWDPVGILNPGSITAPDAFDDNLALAGVPDREWRTSFALHPVEAAAAGVDPWVHAVQSCIGVGRCRTETGGVMCPSFRATGDERDSTRGRARVLQEMVRSAPTQRDGWASEDVREALDLCLACKACSSDCPAGVDMATYKAEFFSRYYRRRLRPIAHFTLGWLPFWLKITGRVPGFVNLVLASPLGRFIAFAGGVTTRRALPRFASRRAVERQLETAGSSVGTPEVVLLVDSFTKGFRPEVAGAAARVAAATGRAITCETEACCGLPWISTGQLKRAKKVMRRAVHRLDDSGDAPIVVIEPSCAAAFKKDVPELLGTDAAERVAARIQSFAEAAGAWTSDGWTPGPLPAAVTLQTHCHEYSTFGAAVQRKALTALGVEEVREATGCCGVAGNFGFEAEHYELSMSVAEQALAPALRSTAADVPVLTDGFSCSMQVKQVDPSRSGLHLAELIDRAMTSSAMPETDAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V713</accession>
    <name>A0A0Q8V713_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11600</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894960.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53030">
        <property type="protein sequence ID" value="KRC53030"/>
        <property type="gene ID" value="ASE19_11600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1832114at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006558">
        <property type="entry name" value="LamG-like"/>
    </dbReference>
    <dbReference type="SMART" id="SM00560">
        <property type="entry name" value="LamGL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359753" evidence="3">
        <location>
            <begin position="33"/>
            <end position="1171"/>
        </location>
    </feature>
    <feature type="domain" description="LamGL" evidence="4">
        <location>
            <begin position="785"/>
            <end position="921"/>
        </location>
    </feature>
    <feature type="domain" description="LamGL" evidence="4">
        <location>
            <begin position="1007"/>
            <end position="1166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="40"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="49"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1171" mass="122994" checksum="0E52F59D310FFE65" modified="2016-01-20" version="1">MDRRLAGKAGLPSFRAIATSLLTALALVGATASQIPFAAGATDTSVRPEPSAALGSTDGSTELDEAARTGNPVIVDEWTTETTKISALPSGNFRATIATSPVREREGSQWIELDPTLTERSDGMVEPAHAIGDIRLSGGGDANSVLATIGHDGVSALIRTPFDLPAPTLHGDTAVYGEVLPGVDLVTASTTTGFTFNWVVKDRAAADDPRVRKLSLPVELTGLTAHPERGGYSFVDSDGLSRFWTPTPTMWDSSGAELINTTTGESDVTPLAAVEQGPDMEDQISGVATSIAKGHMTLTPDTTLLDSPDTIFPVVIDPAMTYDKTRNGWTAVWNNFPTKSFWQTDHSLGAGYEGFEQNKIVRSYFRFDTTGIRGKKIIAAELNVRQIHAASCQARPTDAYRTGAIGTGTTWNNQPARYTQQGSNSSTAGCGTGTAMVGWNVTNGATTLADANSATGTFMLRARDESDRIAWKQFDDAGAELSVTYVSKPVVPAGVTLKTSSASVPCGTSSAPAIVGSTSITMAVRVTSADGASASLRGVFRRRDVTAGTDLADIAGTLVASGGTSTSTWSVQNGRTYRFFAKNRVYWSYSGTQYYLDSAWNTTSLCYFKVDTTRPDPPTVDTSSFAECLSPDATTECSPVGQAGVPGSFSIDTPSTDAKWYYWSLNGGATSSPVSATGGAAADITVTPTALLNTLKVWTVDGAGNQSLEKFFSFKVNRRSPSVRWNFDAPGDLGADSSQTQAAPLTVATGASAAPLGRVGSALSHSGNTPSTSPITGTSGVSATAAFTISAWVRVEAAAQGTTTTLISANYSEGNVFEFGYEPATNKWTAGRRNATSVSLVGSATAVPRVWTHLAATYNPTTKTLAMFVNGRSVGTVVYPSAAWVSSTWRLGCGYVGGTPTGCGTALLDDINLFPSTLGTDEIQDLADPVPDDSLSPIVTPAAAWSMDDADDATLAAETCYAANLALTDLPTPRFGATADGIFRALQLPGASTQQAKVSRPVVDATGSFTIAANVRPTDPSISMVIAQQRGVNRESWTLAYKAISGGGGRWVFHRTVSDASGTSVVEVRSPIVPDASEELNVVIGTYDRKTDHIGLFVNGFSFTQGEDPLVDEVQEMPYSTPWAARGDFQVGNGTLSGTTAAFKGEIERIDVFAGAFDELHALTYDNGIWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V735</accession>
    <name>A0A0Q8V735_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11625</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53035">
        <property type="protein sequence ID" value="KRC53035"/>
        <property type="gene ID" value="ASE19_11625"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="1">
        <location>
            <begin position="80"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="2">
        <location>
            <begin position="253"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="681" mass="76413" checksum="F746EEF1A7F60921" modified="2016-01-20" version="1">MYNGREADGRESLIRVLDRRELFEPLEAMINSLLARYGLYPYMAGVDDTATTADALLYELHRPLDYDNDVVLHRVQADIYRRILDGESIILSAPTSFGKSLVLDAVAASGRFENIAVVVPTLALIDETRKRLSRLRDTYKVITHPSQTLDERNILVMTQERLLDVAELPRLDLFMIDEFYKLDSRNEENRPVLLNHALHRLMTHSRAFYMAGPNVRDLAAALPAQFTATFTSTDFKTVVSNLRVMPKPARGDEIAALVEVCRELEGPTLIFCSSPEKTRKVAEALLTAGLGDQSPEMAPVATWVAEEYHPDWLVARALTNGVGIHHARLPRWLGQYTVGAFNSGILQFFVCTSTMIEGVNTSAKNVVVFDHKIKNRNIDYFTYSNIAGRSGRMRQHFVGEVIVFREPPAEELPIVDVPVYNQASDTPLSLLIQLSDEELTEESKRRLEGMLANATLPLAVLRESRGIDPERQLALAREIARMAPSEAVLLAWNGYPTWEELLACCQLIVTHLRPIRGRENGVSSARQLTFRLRLAQTTQGDVRQLVNNELSGTSSTTRDDPDAAVEEVLGFLRQWVGFDMPRLLSCLQRVVNHVLPQRGIARRANYSPYVAACESMFLPAHVALLDEFGMPPSLVDKLRPHLPPAGSGIDAVLAEIRRLDVKSLQLDQTEQSLFDELRRTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7A2</accession>
    <name>A0A0Q8V7A2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MPAB_Lcp_cat domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12860</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895708.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53246">
        <property type="protein sequence ID" value="KRC53246"/>
        <property type="gene ID" value="ASE19_12860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1395053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018713">
        <property type="entry name" value="MPAB/Lcp_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09995">
        <property type="entry name" value="MPAB_Lcp_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MPAB_Lcp_cat" evidence="1">
        <location>
            <begin position="48"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="288" mass="30999" checksum="746EB8C58C6842E5" modified="2016-01-20" version="1">MAGITTLRHQLGAAIFHRVAGPDGARHRDRIHDTPGPRWFDPASPIGRVHGDASMFVGGIRALLLQSLHPAAMRAVSEHSGYRGDMWGRLARTSRFLAVTTFGTADDAQRAVDAVRAIHDRVTGTLPDGSSYAASDPHLLLWVHVAEVDSFLRAHRAYGAEPLDAAGRDTYVAQTAEVARRLGVVDPPTTERELAEVLARFRPELRGTPEAREAVGYVLLRPPLPWVARPAYGVLAAAAVGLMPAWTRVPLRLPWLPVAEQTVVRVLGGAAVGTIRWAMSPPAVAAAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7C9</accession>
    <name>A0A0Q8V7C9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavodoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895811.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53349">
        <property type="protein sequence ID" value="KRC53349"/>
        <property type="gene ID" value="ASE19_13435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="796211at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN_red" evidence="1">
        <location>
            <begin position="27"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="238" mass="26247" checksum="EA21B7C2C0784716" modified="2016-01-20" version="1">MTDQDLDFSDLTATFINCTLKRSPDLSHTGGLVDVSAAIMRKHGVTVHSVRAIDHDIATGVYTDMREHGWATDDWPALHETVMASDILVLAGPIWLGDNSSVMKQVIERLYGGSGELNERGQYAYYGRVGGCLITGNEDGIKHCAMNILYSLQHLGYTIPPQADAGWIGEAGPGPSYLDEGSGGPDNDFTNRNTTFMTWNLMHLARMLRRQDGIPAYGNQRSAWDAGARFDHENPEYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7R1</accession>
    <name>A0A0Q8V7R1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fructosamine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12625</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the fructosamine kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895666.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53204">
        <property type="protein sequence ID" value="KRC53204"/>
        <property type="gene ID" value="ASE19_12625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1457558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016477">
        <property type="entry name" value="Fructo-/Ketosamine-3-kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12149">
        <property type="entry name" value="PTHR12149"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03881">
        <property type="entry name" value="Fructosamin_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006221">
        <property type="entry name" value="Ketosamine-3-kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="288" mass="30682" checksum="1D158414016FF7BD" modified="2016-01-20" version="1">MARQPVVAGRAEQLLGSAVVATAPVAGGDIATAVKLRLSNGRTAFLKTLASAPPQFFEREAAGLRWLGEATADGGVAVPEVLAVDHDCLILAWVEPGRPNAEAAGTFGRALAATHRAGADAFGAPDDGYIGRLPLLNRTLPTWAEFYAERRIAPYLKVLRDKDIVTADEAATVEAAVARGAQIVPEEPPARLHGDLWNGNVLWAGEDRSFVIDPATYAGHREVDLAMLALFGLPQLQLVMSAYDEAAPLADGWEDRIGFHQLFPLLVHACLFGGQYGARAARVAARYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7S5</accession>
    <name>A0A0Q8V7S5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13745</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897098.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53404">
        <property type="protein sequence ID" value="KRC53404"/>
        <property type="gene ID" value="ASE19_13745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2080861at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="64"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="163"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="265" mass="27828" checksum="7DF28EDA3BF95B09" modified="2016-01-20" version="1">MSKHTNDTLDAALRHLDPAPAADLTEAERGRADALLARIVATPADVPAAVEPVRPRRTRRRNRLLVAAGLAGATGIAVPALLGGSGAFGSWTAEPEPLSAEATAAAGTTCRAALDVPDLGEHAVLAERRGEWTYVLLAGPRSEANCLMPDGLVAREARNGDDDFFGSYSPDPSAPPTLRPDALEEGQSMEGSTHEGWFIWTSGYVGSDVVGVTVHTSTGLDIQASVAEGRFAAWWPSVVPNSEHPSETWSYTVHLANGSDRATDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V867</accession>
    <name>A0A0Q8V867_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lactoylglutathione lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13725</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897102.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53400">
        <property type="protein sequence ID" value="KRC53400"/>
        <property type="gene ID" value="ASE19_13725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1335734at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="172" mass="18081" checksum="6EA8346B7E1B1724" modified="2016-01-20" version="1">MTSQTAGFGPIVQLAWVTDDLDATEQALGPAFGAVGWARMPGIHFGPDACTLRGEPADFTADISLSYAGDLQLELIRPVAGTSMYSEFLAERGPGLHHVCCEVADLDAALEQAARDGLEVVQAGTMAGGLMRFAYLDTAAAGASYVELAEISADLKAMFADIRSRAGEVQRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V902</accession>
    <name>A0A0Q8V902_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14765</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896919.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53583">
        <property type="protein sequence ID" value="KRC53583"/>
        <property type="gene ID" value="ASE19_14765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="886435at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010640">
        <property type="entry name" value="Low_temperature_requirement_A"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36840">
        <property type="entry name" value="PTHR36840"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06772">
        <property type="entry name" value="LtrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="59"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="92"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="132"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="162"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="186"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="225"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="252"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="296"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="322"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="356"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="380"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="45603" checksum="E3F02A4DE3E50A0A" modified="2016-01-20" version="1">MSETHAPTVRHRTRRMLGRDPHEPGRASTPLELLFDLTFVVAFGTAANELAHALAADHIGSGIAAFAFATFGVSWAWINFTWFASAYDTDDWVYRLTTMLQMVGVLIFALGIHPMFTSVTEHGETLDNDVIVWGYVVMRVAMLFQWWRAARHDPGRGTACRTYILSIGVAQVLWCALALLDFSVATTFALILVPLLVEVAGPAYAELRRGGTPWHAHHIAERYGLMVIITLGEGMIGTMAAINVLAEDGLSVEIAVFTLAGTALTFGIWWSYFVVPTGEILHVRRNRSFGFGYGAIVLFGTIVAIGAGLHVAAYYLDHHSKLHLTGTVLTVVVPVALFLAVFYAGYSWLTASFDTFHLVLLATTVVFLVVPVLMAQADVELVWCLLMLSAAPWVTVVGYETVGYRHNAEVLETLEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9L6</accession>
    <name>A0A0Q8V9L6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07190</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53862">
        <property type="protein sequence ID" value="KRC53862"/>
        <property type="gene ID" value="ASE19_07190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="166481at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1592" mass="165630" checksum="FA44A44D2601A707" modified="2016-01-20" version="1">MRVTQHAAVDGPCASVAAVQWGAAPTTVGQRGVGGAECFEFTTGSFGTYLFRAVPDDDAWSPGFGLFEADQPVGAMTGYASYGAFYQLKASTTYQVQVSGDPGAQPRGYRVGYYAVAAATGCDAVPGLGWSAASEFPTQNAAGAVDCQSFSVPTGRAVRLAGDAGYATVLNAAGDVVCNLYRWSMPGRCVASGAGPYRVITSDWGDAATDAHLMVTDTESSTGCTAITLAAWNAALPTRADRAADGSGTECYALSTTRAASYGLRAGRTDNRWNSRLEVWESGSGDLLHQTSVDIAFTELSLRGSRTYRFVVSGDPDGYPGGVALGVYDITQQAGCATLPGLDWDDAPATFDLADDAVGCVEFASAAARTLRSAAQRTSAEGETWFRLYNAAGVNLCSFSTGSVYSCITSGTGPYRLLAAPSWSDAAAARVHLNDISSAQGCATVALGTWGTALPGSATRAADGSGAECFTVTTAAAGSYAMASWFGSTQWSPRVELWDTDSKTQAWQSYTSWWYQYQPVSLRGTTAYRVVVSGDPDGYDNSYAWGLTQVAGGGTCAAITGVDWSSTPEQGTLAEGEIDCRQLNAESGSYVRVRVARTGELGQPRVEVVNKAGDVLCQVDVGHGSTCRLTGVGPFRMLAHSVDPVGTTAYRFWITDPASSIGCGAASSSTAEPAQAGILAPDTAAVCYDLGSTAGAVYVPATHPSWSVRGVVLNGRGDELCGTDQACVLSGPAPYRLSWTSTSEDTETYAFRVLRPTTDDGSCLNVASVAYGFEPLSGKVVEDLDVRCYEFAATTGDQLRFRPRDLSGQESPGMVVFGPSGGAICSVDSAYWDVDLDCTAAATGRHTAYVIADASSLGRYQLSAECLNPACGPDELTVLSANPKTIGQSSSVTVTLQGKNFDRSQTVTLSRLGTVLTGQVIDVSSDRRTIRVLFDLSTAGVGSWNVKVASTDGEEATYASAVTVTAPGEPKVTASLTGLGRFVPGRPQTMSLTVTNAGNVDGIGVPIVLRGFPAGSTIEPQFTLYGLDAAGEAVPATITPGDDDIFTAADGSLGIPLYINRMPAGGRVDVSFRVTVPVQANYDLLASVGQCMVNPNATGGVARAAAITPGVQCANATYNALTDAAFEAVPGAACVSGVRDVVETGVTNWAENGSPFSFGGWGDVLEFGVSTVFSGLNCAADFFPPTKVAKTVLKVASTAWGLGTLGKTCYEDGVALGNSWVTSLDPNEIVGPAGGGTNNAIRGEGRQHYAIYFENSKDASAPAQVVKVDTTLDATKFDMSSLTFGALQFGTTIWTPAEGATELDHSLDLVSDDGLQLHITAAKNDSGKLSWLLETIDPVTGDLPEDPLLGFLPPNDDGTEGQGVVFFDVGYTAAVQSGTTVSAKADIVFDLNAPIATNTWSNRIDRVAPTAAVSGVPKSTTNPNIPVTWGGSDGQSGITQIDVFVAVDGGSYALWKSAAASGKATYPGAIGHRYAFVAVARDGAGNASAMPSVPHATTQVLRVFKYSGPRLALRGTPTTGSTLRSNFAPTKVVPRGTVRYQWFRGTKAIAGRTAATYKVTRTDRGKLLSLRITITRSGYAPKVLKSNSVRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9P5</accession>
    <name>A0A0Q8V9P5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08340</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54062">
        <property type="protein sequence ID" value="KRC54062"/>
        <property type="gene ID" value="ASE19_08340"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="11"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="209" mass="22681" checksum="B3779C8599712C78" modified="2016-01-20" version="1">MVEPSVPALVEAVERELDAAGWDRAHLVGSSLGGWIAAELALRGRAASLTLVAPSGRWTDREWRALDRLTRSAMGGARLAARWADLIGRWAPLRTIALLPIALFGWRLPHDDVAYFLKAASASSTSVAATLDWISRHRAGAPSLADLDVATSILWGRADLQLPVRQCARWQADAPHVRARVLALSGHVPMIDAPRQTVAVVLETARRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9U8</accession>
    <name>A0A0Q8V9U8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07395</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895331.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53899">
        <property type="protein sequence ID" value="KRC53899"/>
        <property type="gene ID" value="ASE19_07395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="242" mass="27016" checksum="CE81F312EFB21D5B" modified="2016-01-20" version="1">MRHRLRVLRAHALAWVGLLRLAVAIARGRVDQVWVGDSHAAYFVADHFPPMVVGSTAERRWVWHLGPRLMFSIARDGFKPEMHRALRMLGRVPHSREVTWVFSFGEIDNRCHLAPRVADGLDLDFVAAYVDRIRGAVTDLGAPSGLVLFPPPPALEDFVHESFPVRGTNEERLVTHRMLRARLADEISAPASGPRLVALDLTDDLSDPQGWFDTALHFDGVHANDAGRALAQTRLHELLAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA07</accession>
    <name>A0A0Q8VA07_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08095</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895456.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54024">
        <property type="protein sequence ID" value="KRC54024"/>
        <property type="gene ID" value="ASE19_08095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040611">
        <property type="entry name" value="TetR_C_35"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18556">
        <property type="entry name" value="TetR_C_35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="10"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="193" mass="20535" checksum="9BA815D7BEB8AE85" modified="2016-01-20" version="1">MVRPRRRSAAERSAAVFDALRALLLANPWGDVTLEAVANDAGVSRQTLYNAFGSRYGLAQAYTLALADVLCDAIAATLAAHPDDRRTGVEQGLVLYLETAVADPLIQRVRAGDAHPDLVRLVTTDAGPLLQRVAERLEAAATATWPDVDADELRAFARALARLAVSYVSMPPEYDESPAALAAGLSGILTPRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA41</accession>
    <name>A0A0Q8VA41_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">RDD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_07705</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895387.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53956">
        <property type="protein sequence ID" value="KRC53956"/>
        <property type="gene ID" value="ASE19_07705"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010432">
        <property type="entry name" value="RDD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06271">
        <property type="entry name" value="RDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="35"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="domain" description="RDD" evidence="6">
        <location>
            <begin position="35"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF06271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="142" mass="15304" checksum="5538881315759A3B" modified="2016-01-20" version="1">MSHYPDPSFAPPQALSPLGLPDGVVIASRGRRIGAYFLAIPLAVVTLGIGYVIWGAIAWGKGTSPALQVLGMRAWKEDRRAVATWGGMAQRNILDYLVLSVTCGIASIVSFIMFLSDEPRQRTLADRMGGTVIVHDPNKRLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAY3</accession>
    <name>A0A0Q8VAY3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10235</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894720.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52787">
        <property type="protein sequence ID" value="KRC52787"/>
        <property type="gene ID" value="ASE19_10235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1787758at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="190" mass="20636" checksum="BA19B5D17D7E62BF" modified="2016-01-20" version="1">MLPLLRPRQRRIGIAAGALVALVLLLLSHSFGRAVPTNNYRPLITTDAIASGCYPLPGDAQLDLAYQVRWDEDVATASGERRILRGQYDLVDRDEAQRRLVASFAAVGFHEDAGDASSDAGTTTMSKGAEHITITVTELPDTSAETLVRGDFVLDLPVVALARPDDPVCTFPSSTKRWSDAGYEKRSPNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC69</accession>
    <name>A0A0Q8VC69_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alanine racemase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13900</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897070.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53433">
        <property type="protein sequence ID" value="KRC53433"/>
        <property type="gene ID" value="ASE19_13900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="859043at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009006">
        <property type="entry name" value="Ala_racemase/Decarboxylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ala_racemase_N" evidence="1">
        <location>
            <begin position="10"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="358" mass="39198" checksum="B6390263D93A562D" modified="2016-01-20" version="1">MSLTLTVDGPRWRAHLEQVAATHAGLVPVAKGNGYGFTLGRLARKAQWLADRGHDVRTLAVGTYDELPEVAQRWDGDLLVLTPWRPWVPLPDPATRRRLVHTVSRVVDLRDLLHADPSARIVLERMTSMRRHGMAARELWEAGELLRKHPGARIEGLALHLPLGQGTHLGEVTRLMNDFVAAEVPTRGTPAVWVSHLTDAELATLRGQYGDFAFRPRIGTGLWLGDRGALSVTATVLDVHPVERGDAFGYRGRTAPKSGHVLVVSGGTAHGIGLEAPTGEQTIKARAASLARGGMDAVGFVRSPYSIDRKQRLFAEPPHMQASMLFVPHGARVPEVGEDVDVRVRYTATTFDRVVIDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD37</accession>
    <name>A0A0Q8VD37_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Transcription termination/antitermination protein NusG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nusG</name>
        <name evidence="9" type="ORF">ASE19_09780</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Participates in transcription elongation, termination and antitermination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the NusG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53603">
        <property type="protein sequence ID" value="KRC53603"/>
        <property type="gene ID" value="ASE19_09780"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006354">
        <property type="term" value="P:DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032784">
        <property type="term" value="P:regulation of DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031564">
        <property type="term" value="P:transcription antitermination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.940">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00948">
        <property type="entry name" value="NusG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006645">
        <property type="entry name" value="NGN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036735">
        <property type="entry name" value="NGN_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043425">
        <property type="entry name" value="NusG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001062">
        <property type="entry name" value="Transcrpt_antiterm_NusG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015869">
        <property type="entry name" value="Transcrpt_antiterm_NusG_bac_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30265">
        <property type="entry name" value="PTHR30265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30265:SF2">
        <property type="entry name" value="PTHR30265:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02357">
        <property type="entry name" value="NusG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00338">
        <property type="entry name" value="NUSGTNSCPFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00738">
        <property type="entry name" value="NGN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82679">
        <property type="entry name" value="SSF82679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00922">
        <property type="entry name" value="nusG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01014">
        <property type="entry name" value="NUSG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 5 6" id="KW-0889">Transcription antitermination</keyword>
    <keyword evidence="3 5 6" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 5 6" id="KW-0806">Transcription termination</keyword>
    <feature type="domain" description="NGN" evidence="8">
        <location>
            <begin position="101"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="33"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="33"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="297" mass="32225" checksum="A0E9FE715D0C1D6F" modified="2016-01-20" version="1">MSEQYDSAPEIDEAADQVEAVEAVEAAEDDALEETAQADEAEQTVEVDETVDIEGADEIAAVEDESDEDTDDAEEPVEDDAPAAADEDPLEAFRRELWAKPGDWFVVHTYSGMENRVKQNLENRIHSLNMEDYIHEIVVPTEEVAEIKNGQRKMVKRTVLPGYVLVRMDLTDESWAAVRHTPSVTGFVGHSHQPVPLSMDEVEKMLAPAVVNAAVAEAEAAAAAGSGGGAASTPSKRPVEVADFDVNDSVLIVDGAFATLHATITEINAEAQRVKALVEIFGRETPVELSFSQIQRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD56</accession>
    <name>A0A0Q8VD56_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L36</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4 6" type="primary">rpmJ</name>
        <name evidence="6" type="ORF">ASE19_06450</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the bacterial ribosomal protein bL36 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_004008316.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55068">
        <property type="protein sequence ID" value="KRC55068"/>
        <property type="gene ID" value="ASE19_06450"/>
    </dbReference>
    <dbReference type="GeneID" id="55564469"/>
    <dbReference type="OrthoDB" id="2066169at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00251">
        <property type="entry name" value="Ribosomal_L36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000473">
        <property type="entry name" value="Ribosomal_L36"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035977">
        <property type="entry name" value="Ribosomal_L36_sp"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42888">
        <property type="entry name" value="PTHR42888"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00444">
        <property type="entry name" value="Ribosomal_L36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57840">
        <property type="entry name" value="SSF57840"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01022">
        <property type="entry name" value="rpmJ_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00828">
        <property type="entry name" value="RIBOSOMAL_L36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="37" mass="4342" checksum="589B8645314F5BD8" modified="2016-01-20" version="1">MKVNPSVKPICDKCKVIRRHGRVMVICENPRHKQRQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD65</accession>
    <name>A0A0Q8VD65_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase</fullName>
            <shortName evidence="3">GlcNAc-Ins deacetylase</shortName>
            <ecNumber evidence="3">3.5.1.103</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">mshB</name>
        <name evidence="4" type="ORF">ASE19_06115</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside + H2O = 1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside + acetate</text>
            <dbReference type="Rhea" id="RHEA:26180"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30089"/>
            <dbReference type="ChEBI" id="CHEBI:52442"/>
            <dbReference type="ChEBI" id="CHEBI:58886"/>
            <dbReference type="EC" id="3.5.1.103"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the MshB deacetylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.103" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894386.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55157">
        <property type="protein sequence ID" value="KRC55157"/>
        <property type="gene ID" value="ASE19_06115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1380748at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035595">
        <property type="term" value="F:N-acetylglucosaminylinositol deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010125">
        <property type="term" value="P:mycothiol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10320">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01696">
        <property type="entry name" value="MshB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003737">
        <property type="entry name" value="GlcNAc_PI_deacetylase-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024078">
        <property type="entry name" value="LmbE-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017810">
        <property type="entry name" value="Mycothiol_biosynthesis_MshB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12993">
        <property type="entry name" value="PTHR12993"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02585">
        <property type="entry name" value="PIG-L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102588">
        <property type="entry name" value="SSF102588"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03445">
        <property type="entry name" value="mycothiol_MshB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="3">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="157"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC55157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="307" mass="33331" checksum="30D30D70E3408486" modified="2016-01-20" version="1">MTATPAHRLLLVHAHPDDESIGQGATMAKYVAEGRGVTLVTCTAGEMGEVLVPELAHLAADQDDRLGEHRRGELEVAMKALGVTDHRFLGGFGTYRDSGMKWHADGHAVAADDVHENAFWHADLTVAATQLAAVIREVRPQVLVTYDEFGGYGHPDHVQAHRVAMYGAQLAAAPSYRRDLGEAWEITKIYWSAISESRIRAGLRSLRAAGDTTTFEGMDPEGDLPPMFRPDADITCEVDATEYVERKLDALRAHATQITTDGPFFALSNNVGAQAWGLEQYRLVQGTPGNADGDNGWENDLFAGIPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDM1</accession>
    <name>A0A0Q8VDM1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_07385</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895329.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53897">
        <property type="protein sequence ID" value="KRC53897"/>
        <property type="gene ID" value="ASE19_07385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1015470at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="2">
        <location>
            <begin position="5"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="3">
        <location>
            <begin position="374"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="117"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="458" mass="48549" checksum="932D74D356522084" modified="2016-01-20" version="1">MIRLLERAAAAVPDQPAVVTTEATTSYAGLLAAARTVGAALRESGIDRFAVVEPDAGRVLALLAGAALVGAEPCQYQPDIDATQFREQAAALGHTVVVSRRDDLAGEGLVVVRPDELTSDSPVTDSGDDGEQPILIRTTGTTGLPKAARHDWSVLARTARDTRARPGQRWLLAYGPQQFAGIQVLQHVMAIQGTLVAPFPRQPRDGLEALLTQQLDCVSATPTYWRFLLAEARSRGVALPPLAQVTLGGEASSPDLLTDLRAALPGARISQVYASTEFGSIASVGDGRPGLSVASLWSEENPDGLLRVVDGQLWVRAGTGMSGYAGDRSDTPVEEDGWVPTGDLAEVVEDRVLFRGRNSEVINVGGVKVHPLPVEERISALPQVSMARVFGRPNRLTGAIVAVEIVPTGDPEAVDTSDLRRAVKEAVADLPSAWHPRSVSVVTDLETRGAKTVRGMVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFX5</accession>
    <name>A0A0Q8VFX5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13415</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53345">
        <property type="protein sequence ID" value="KRC53345"/>
        <property type="gene ID" value="ASE19_13415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1106755at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="317" mass="33100" checksum="BBF19DF1427DB11F" modified="2016-01-20" version="1">MVLACALLVSACSSDPKPVYQEAPAPEAVVTEYDASLEPSAAVLSLVPEDATTLTVTDFDQLRLVLGFASLDSASPDPQRTRFWARAARSDALSTGLLRPVDARLRADFGFGQDDVAWEASYAGGASGWVIAFADDVAMAAVQRAVRAGIGPLEGAVVDADRHLVTSAALPDTEASWGVEPIVQSLVGREAISTFVDRSCLDFDDVFGAGMQAQLAEAPAAALRALDELDAYSVALGAELATVQLGPKRADAFDRVRVAEVMPPTDPDFGVVMSRGVADPSTGRLGYTISDPAAAAELTRTRQLPFAVCRSLGVSAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG36</accession>
    <name>A0A0Q8VG36_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH marR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13690</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897109.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53393">
        <property type="protein sequence ID" value="KRC53393"/>
        <property type="gene ID" value="ASE19_13690"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1744037at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="22"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="17836" checksum="8BEA084C5BB78861" modified="2016-01-20" version="1">MLNLLDHQEGEELNQPWHATVTLETLRSILEAAVEIRQVVSRRTGLSPVELAALEQLSHGPVGPAALARRLDVTGAAATGIVDRLSRRGHLDRVADATDRRRTQLHITDSAQEEVQRHLRPMFAGLARLDAELGADERAAVERYLEGVLACLEDVIEAPEED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG50</accession>
    <name>A0A0Q8VG50_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14195</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897018.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53485">
        <property type="protein sequence ID" value="KRC53485"/>
        <property type="gene ID" value="ASE19_14195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041581">
        <property type="entry name" value="Glyoxalase_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18029">
        <property type="entry name" value="Glyoxalase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="9"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="129" mass="14151" checksum="06123541A72753FA" modified="2016-01-20" version="1">MTSSPLVTELLSVCIDTSDAGRLAQFYADLTGGEVSGVYPEYGYASAEVLGSTLNFQTVADYRRPEWPGQEHPQQFHLDFRVPELEPAVEHAVALGATVAADQPEGMTWRVMLDPDGHPFCLCPPQQQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGV4</accession>
    <name>A0A0Q8VGV4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Murein biosynthesis protein MurJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_13945</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897146.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53680">
        <property type="protein sequence ID" value="KRC53680"/>
        <property type="gene ID" value="ASE19_13945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="749401at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13123">
        <property type="entry name" value="MATE_MurJ_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004268">
        <property type="entry name" value="MurJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03023">
        <property type="entry name" value="MurJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01806">
        <property type="entry name" value="VIRFACTRMVIN"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01695">
        <property type="entry name" value="murJ_mviN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0133">Cell shape</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="80"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="123"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="153"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="194"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="235"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="275"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="320"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="364"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="393"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="425"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="459"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="498"/>
            <end position="520"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="541" mass="57536" checksum="6E49703DE03EAD5F" modified="2016-01-20" version="1">MAAGTVVSRFSGFIRSTLLAAALGISLHADIFTVANTVPNMLYILLAGGVFNAVLVPQLVRAMKNDADAGAAYVDRVITLAVLFLGTVTVLLVVCAPLVMQLVLGSEYDGRGLVEERQSAVDFARFCLPQVFFYGMFVLIGQVLNARGRFGPMMWAPIANNVISVAVLVTYLFVFGPATKAEQHGPFTPGQESLLGIGSTLGIAAQLLILVPYLRSAGIRYRPRFDFRGVGLGQTFRLAVWTVLFVVVNQVAYVVVVRLASNGTAAADDGTGITIYSSVMLVVMVPHSIITVSLATAILPRLSAAAAAGDMTRLAATLGSTLRTALSVVVPFAALLPSIALPLAQVIWGHGATRDTFYRFESSMVLFGFAVVAFTVHYLMLRGFYALERNRTVFWVQCVIAATNITLAILFVGRVDPWDTSPMLILAYGGAYTVGATLSSVVLVRLLRRGGHPAGGARAWRGFVLRLLAAAAVVWAVARFLDVVASDTIDELVSSPGWVWAGVELVVVSAGAGMALLGAAKLLRLDEVTSVVGTVLARVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGZ7</accession>
    <name>A0A0Q8VGZ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12795</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895697.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53234">
        <property type="protein sequence ID" value="KRC53234"/>
        <property type="gene ID" value="ASE19_12795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="336531at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="43"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="131"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="399" mass="41799" checksum="269B136D2556269C" modified="2016-01-20" version="1">MTTSPGTHSHRIDRQVVYGFVFIALIVALVAGTIAKYRGAFEDTVEVTVQSDRAGLTLASGAPIKLRGVEIGSVGDIATDGQQVTITLEIDKDEVDRVPADVTAQIVPPTAFGAKYVQLTPVDADAGGGPSIEAGAVIPADKVTVEVDEAFENLTKVLDVARPAEVNSALTAVAGALDARGQLIGDLISQTDAYLRSFNPSLRTLSADLRVADDVADVYAVARPDLVATLAQAGTISATVVRQQASLRALERSLTGFSDQADTLLRSSERGLVTSLELLGPVTKVLDRYSPELPCLVLGLARTNALAEAAVGGTHPGVTTITRIVPGRDPYTYRDNLPLVGDDRGPRCYGLPVITQAEADQQPPSLHTGANPYVGPQPTPDQAVLDTLLGLIKGGAQLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH27</accession>
    <name>A0A0Q8VH27_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Phosphate transport system permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_02140</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892669.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56652">
        <property type="protein sequence ID" value="KRC56652"/>
        <property type="gene ID" value="ASE19_02140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1325025at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011864">
        <property type="entry name" value="Phosphate_PstC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02138">
        <property type="entry name" value="phosphate_pstC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="46"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="89"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="132"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="194"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="316"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="11">
        <location>
            <begin position="96"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC56652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="350" mass="37310" checksum="7F9092A0D35D1486" modified="2016-01-20" version="1">MSRVAVPPSPASSSDDPWTGVDEDLPRPIAVRYSLQDKVFLQVVRVLAFTVLAITSGIGIFLGIQSVPTLQHYGLSFFTEYRWLPSQDIVGIAAVLLGTIQVAVIALLIAFPLSLLTALYITDWAPGWARPLLVRAVDLMAAVPGIVFGLWVLIVIQPRATEVTHWISKYLGWIPFFKVRTDVDYPIWTQAPGYPSYAGSAAIAALAVAMMIFPMATSVMREVFSEAPAGEKEAALALGATRWAMVRTVVLPFGRGGVIGGTMLALGRALGETISVVMVISQAFEIKPYVLESGTATISALIASGFKEASPAQLSALLTAGFLLFVMTLVVNSMAAVVVARSRGGGVTEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHF6</accession>
    <name>A0A0Q8VHF6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13505</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53362">
        <property type="protein sequence ID" value="KRC53362"/>
        <property type="gene ID" value="ASE19_13505"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="278"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="278"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="316"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="330" mass="35493" checksum="FAFD1EA3C967F71E" modified="2016-01-20" version="1">MLDQDTARALFAIADHAGATVALLGDRHQLPAVGRGGVLDLAARWAPPEAHLELESVHRFSDEAYAHVSLLMRTGERPGAVFDALLERGQVVVHASDVERTAAVADIGARGDELIIADTREQVASINAAIRDRRQPGSDRVGEPVTRRGERIGLGDRVATRLNDRDLGVANRNLWTVAGIGDDGSLIVAGRAGQRTLPKDYVSDHVELAFASTAYGAQGQTVDSAHLVVGEHTGAAVAYVAMTRGRHSNVAHLVADSVDEARQQWIEVFGRDRADLGPGHAATRVDEDIDRYGTRLPDESWTPAPRPLGRARSEVRPTGSDQHRVRGVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHX3</accession>
    <name>A0A0Q8VHX3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Release factor glutamine methyltransferase</fullName>
            <shortName evidence="6">RF MTase</shortName>
            <ecNumber evidence="6">2.1.1.297</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">N5-glutamine methyltransferase PrmC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Protein-(glutamine-N5) MTase PrmC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Protein-glutamine N-methyltransferase PrmC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">prmC</name>
        <name evidence="9" type="ORF">ASE19_03250</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>L-glutaminyl-[peptide chain release factor] + S-adenosyl-L-methionine = H(+) + N(5)-methyl-L-glutaminyl-[peptide chain release factor] + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42896"/>
            <dbReference type="Rhea" id="RHEA-COMP:10271"/>
            <dbReference type="Rhea" id="RHEA-COMP:10272"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30011"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:61891"/>
            <dbReference type="EC" id="2.1.1.297"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.297" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892856.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56838">
        <property type="protein sequence ID" value="KRC56838"/>
        <property type="gene ID" value="ASE19_03250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1816476at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102559">
        <property type="term" value="F:protein-(glutamine-N5) methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036009">
        <property type="term" value="F:protein-glutamine N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018364">
        <property type="term" value="P:peptidyl-glutamine methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02126">
        <property type="entry name" value="RF_methyltr_PrmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004556">
        <property type="entry name" value="HemK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040758">
        <property type="entry name" value="PrmC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019874">
        <property type="entry name" value="Release_fac_Glu-N5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007848">
        <property type="entry name" value="Small_mtfrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05175">
        <property type="entry name" value="MTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17827">
        <property type="entry name" value="PrmC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00536">
        <property type="entry name" value="hemK_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03534">
        <property type="entry name" value="RF_mod_PrmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 9" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PrmC_N" evidence="8">
        <location>
            <begin position="5"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="domain" description="MTS" evidence="7">
        <location>
            <begin position="117"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="187"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="282" mass="30184" checksum="38B01F34E70BF3A7" modified="2016-01-20" version="1">MSARQLVHDASGRLAAAGVASPDHDAAELLAHVLGTTRGRLLLVDGVDPLQQQRYDDLVARRAAREPLQHLLGSAAFRYVEVAVGPGVFVPRPETELLAGWAIDRAREVLGAGETPVVVDLCTGSGVIARSIADEVPEARVHAVELDPDAHAWAERNLTGTGVDLRLGDLATAFDDLAGQVHVLVSNPPYVPLEAWESVAVEARDHDPHLALFSGDDGLDAIRVIAERGLLLLVPGGVVGVEHADAQGESAPAVFSRDGRWSEVRDHRDLADRPRYLTARRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI06</accession>
    <name>A0A0Q8VI06_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07955</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895433.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54001">
        <property type="protein sequence ID" value="KRC54001"/>
        <property type="gene ID" value="ASE19_07955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1590640at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046237">
        <property type="entry name" value="DUF6270"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19786">
        <property type="entry name" value="DUF6270"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="382" mass="43289" checksum="F88FC0F9DBF4A234" modified="2016-01-20" version="1">MADAPTKTVSVLGSCISRDNFNRRFNPGYKRWYSVGATTNQSSMIALMSPPIDEPWEPLEPMKPYGLWNVGSDLSREILTLLPQERPDVVVLDFFGDVHFGVLRLADGRYLTDNRWRVRKTDLHQRVLDAPGTERIRWQDDAERYFDLWVEAMDRFAAFLAAEVPDTQVVLHCGFNVDAVIPSGGTLASPMPPRRRRGARAGSQFWHRLNEHARSAYGWDHIDLGEEHWVTFEDHPWNAMAVHYTYDYYPRFLAELDRLVLRREVDPDTAAGIDAVAAAAADHVLAVAQWHRQSIARAEALAAERERPRWKRLLRPGDVPAPPAPPPLDGAARAEELLAEVRRRVDEATYPRVERLVTSARTHADWLLEAVPDGAVRPAGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI48</accession>
    <name>A0A0Q8VI48_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08045</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895448.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54016">
        <property type="protein sequence ID" value="KRC54016"/>
        <property type="gene ID" value="ASE19_08045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1900999at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360059" evidence="2">
        <location>
            <begin position="26"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="332" mass="36501" checksum="1B49B2C10BA96C2C" modified="2016-01-20" version="1">MTTSRRLLAAAALVIVAAVAGAFVAASGDAGMAIVLAAVGLGVGLNLLVSLLLLSQLRHLGGEVAALRRGAGRQRRMTRRVQQELRRAHERLARHRKVLDRTEERVRGVRVQQNQDYYRRVAEGRVLRGQLQETVRLFATYPMSAQVPPMGHWAASPDLVGALLDEFLDKRPGLVVECGSGVSTLWLATAARQHGVPTRIVALEHDAEYAQESRALLARHGLSDIAEVRDAPLQVVDVEGTDRTWYAPSAVEDLHDIGLLFVDGPPTSTGEHARYPALPVLQDQLAPTCSIVLDDMIREDEQQVAQLWHDRLPDLSRTDLRLEKGATIFRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI72</accession>
    <name>A0A0Q8VI72_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">30S ribosomal protein S4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpsD</name>
        <name evidence="10" type="ORF">ASE19_06435</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="6">With S5 and S12 plays an important role in translational accuracy.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uS4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894474.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55065">
        <property type="protein sequence ID" value="KRC55065"/>
        <property type="gene ID" value="ASE19_06435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1211060at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01306_B">
        <property type="entry name" value="Ribosomal_S4_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022801">
        <property type="entry name" value="Ribosomal_S4/S9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001912">
        <property type="entry name" value="Ribosomal_S4/S9_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005709">
        <property type="entry name" value="Ribosomal_S4_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018079">
        <property type="entry name" value="Ribosomal_S4_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11831">
        <property type="entry name" value="PTHR11831"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11831:SF4">
        <property type="entry name" value="PTHR11831:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00163">
        <property type="entry name" value="Ribosomal_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01390">
        <property type="entry name" value="Ribosomal_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01017">
        <property type="entry name" value="rpsD_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00632">
        <property type="entry name" value="RIBOSOMAL_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_S4" evidence="9">
        <location>
            <begin position="3"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="S4" evidence="8">
        <location>
            <begin position="91"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM01390"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC55065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="202" mass="23601" checksum="05AF4EEE920FE45E" modified="2016-01-20" version="1">MARYTGPLTKKSRRLGVDLVGGDAAFEKRPYPPGQHGRARIKESEYRNQLQEKQKARFTYGILEKQFHKYYVEAARRQGKTGDNLLQLLECRLDNVVYRAGFARTRRHARQLVNHGHFLVNGKKVDIPSFQVTQYDIIDVREKSLEMTPFIVARETHGERIVPAWLEALPNRMRVLVHSVPVREQIDMPIQEQLIVEYYSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIF1</accession>
    <name>A0A0Q8VIF1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">UPF0235 protein ASE19_03120</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03120</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the UPF0235 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893080.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57046">
        <property type="protein sequence ID" value="KRC57046"/>
        <property type="gene ID" value="ASE19_03120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1997369at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00634">
        <property type="entry name" value="UPF0235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003746">
        <property type="entry name" value="DUF167"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036591">
        <property type="entry name" value="YggU-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13420">
        <property type="entry name" value="PTHR13420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02594">
        <property type="entry name" value="DUF167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01152">
        <property type="entry name" value="DUF167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69786">
        <property type="entry name" value="SSF69786"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="102" mass="11169" checksum="43C19EDA373B7CD8" modified="2016-01-20" version="1">MDADLPWWRPEEGSTTAWLLRVRVQPGASRTGEAGPTGPEGAELKVRLASPPVDGRANEELVRWLAKELGVPRSAVTLLRGQASRSKQLRIDTVNRRARGGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIP0</accession>
    <name>A0A0Q8VIP0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">RNA polymerase sigma factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_03505</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893088.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57055">
        <property type="protein sequence ID" value="KRC57055"/>
        <property type="gene ID" value="ASE19_03505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006950">
        <property type="term" value="P:response to stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014293">
        <property type="entry name" value="RNA_pol_sigma70_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000838">
        <property type="entry name" value="RNA_pol_sigma70_ECF_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02947">
        <property type="entry name" value="SigH_actino"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01063">
        <property type="entry name" value="SIGMA70_ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="4 5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 5" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="7">
        <location>
            <begin position="39"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="8">
        <location>
            <begin position="147"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC57055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="24619" checksum="75D5E18AC0E33CD8" modified="2016-01-20" version="1">MTEISDLSDLDSLGEPEVVDVATESPEDRAARFERDALPYLDQLYGAAMRMTRNPADAEDLVQETFAKAFSAFHQFKPGTNLKAWLYRILTNTFINNYRKKQRQPQQSFAGDTGDVEDWQLARAESHTSTGLKSAEMEALEHLPDSQVKDALQRLPEEFRLAVYLADVEGFAYKEIAEIMDTPIGTVMSRLHRGRRQLRDMLSDYVRTGGDAPLEGGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ05</accession>
    <name>A0A0Q8VJ05_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADPH:quinone oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_24090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894038.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57404">
        <property type="protein sequence ID" value="KRC57404"/>
        <property type="gene ID" value="ASE19_24090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="831053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002364">
        <property type="entry name" value="Quin_OxRdtase/zeta-crystal_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01162">
        <property type="entry name" value="QOR_ZETA_CRYSTAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="11"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="33462" checksum="6FA46437353AAD4E" modified="2016-01-20" version="1">MRAVQVITTTGPDDIVVTDVPEPVPGPGEVLVEVHSVGIAFPDLLLSKGMYQLRPEPPFTLGVDFAGVVVAGEGFEPGQRVAGVGGYGGAAELVVGSVENVFPIPDSITFDEAVALPMNYLTALFALDERGGVQAGDTVLVHGAAGGVGTATIQVAKALGARTIAVASTEEKRAYALAAGADEAIPVEGFKDAARELTGGNGVDVVLDVVGGSLFTDSLRALARQGRVLVVGFASGEGIPEVKVNRLLLTNTDIRGVGWGEYAFSHPGYMRQQWAQLLPMIESGTVKPPVGKVYPIEEFGRALVDMDERATLGKSVVRIRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKI0</accession>
    <name>A0A0Q8VKI0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23500</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893933.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57727">
        <property type="protein sequence ID" value="KRC57727"/>
        <property type="gene ID" value="ASE19_23500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1953080at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026004">
        <property type="entry name" value="Septum_form"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13845">
        <property type="entry name" value="Septum_form"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360118" evidence="1">
        <location>
            <begin position="22"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="Septum_form" evidence="2">
        <location>
            <begin position="36"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="Septum_form" evidence="2">
        <location>
            <begin position="124"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="269" mass="29573" checksum="68730A889AA14ED1" modified="2016-01-20" version="1">MRLLRAVVVLVLGFLAVGSLAACGSEHQGANSDPDQVDAVDVPVSGLCRDLTPDDVARTANATKTIDCASRHTAETYATGRLPEEFDDAGYDDADLGTYAYRTCSEKFAEFVGADESLVLRTTLSWAWFRPSEKAWGKGARWYRCDVIGGNTASREYRALPKTARGMLGGRPNDSWLSCASGPTVAEGEKVPCSQKHDWRAVTTVKLGQPTDAYPGDRVMESRTRSFCANSVKAWLNYPSEFEYGFTFFHQAEWKAGIRRSVCWAKTAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKI5</accession>
    <name>A0A0Q8VKI5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04540</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894330.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54752">
        <property type="protein sequence ID" value="KRC54752"/>
        <property type="gene ID" value="ASE19_04540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2104468at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="95" mass="9825" checksum="7BEF0B7A661DF29A" modified="2016-01-20" version="1">MENITMIPLTDVNVWQISLSPLDCATSALATLEVQGIAVRPAVPASAAFAPFAAGEAAVANDVTPVKRERALTGMGHRGITSAYVPGSPAWSHPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLQ1</accession>
    <name>A0A0Q8VLQ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Long-chain fatty acid--CoA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07825</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895406.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53975">
        <property type="protein sequence ID" value="KRC53975"/>
        <property type="gene ID" value="ASE19_07825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="961884at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="9"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="436"/>
            <end position="511"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="518" mass="55697" checksum="0EBE60C861AC016E" modified="2016-01-20" version="1">MTNLAGFLENSAQTYPDRTAIVFGDTRLSYPQVDGAANQVANLLVSRGIKPGDKVALSCPNLPYFTIIYYGILKAGATVVPLNVLLKGREVAYHLGDSDAKAYFAFQGTPDLAIGAEGYAGFQQADGCEHFFMVTADPTAASPIEGTETLGQALAGQAPTFDTVDVDDDDTAVILYTSGTTGQPKGAELRHRNMRDNALAGKDLFGADAERPDTFLCVLPLFHSFGQTVIQNGGFAFGGTVVMLPRFEAAPAIGLMLKESVTFFAGVPTMYWGLLNALDDSVDVKTLAANLRVAVAGGAALPVEVHHQFEERFGVTILEGYGLSETSPVASFSRHGQEVRVGSIGTPIPGVEMKLIDPESWEEIKDPDGIGEIAIKGHNIMKGYYKRPDATAEAINAEGWFRSGDLGRKDADGWYYIVDRSKDMIIRGGFNVYPREIEEVLLTHPAISLAAVIGVPHESHGEEIKAFVILKPGASATADEIVAWGKEQMAAYKYPRVVEIVESLPMTATGKILKRELS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMI4</accession>
    <name>A0A0Q8VMI4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Methylenetetrahydrofolate reductase</fullName>
            <ecNumber evidence="10">1.5.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_02465</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2 10">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + NAD(+) = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:19821"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.5.1.20"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + NADP(+) = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19817"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 10">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4 10">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 10">Belongs to the methylenetetrahydrofolate reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.20" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892725.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56707">
        <property type="protein sequence ID" value="KRC56707"/>
        <property type="gene ID" value="ASE19_02465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1425269at2"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106312">
        <property type="term" value="F:methylenetetrahydrofolate reductase NADH activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106313">
        <property type="term" value="F:methylenetetrahydrofolate reductase NADPH activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00537">
        <property type="entry name" value="MTHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029041">
        <property type="entry name" value="FAD-linked_oxidoreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003171">
        <property type="entry name" value="Mehydrof_redctse-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004620">
        <property type="entry name" value="MTHF_reductase_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02219">
        <property type="entry name" value="MTHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51730">
        <property type="entry name" value="SSF51730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00676">
        <property type="entry name" value="fadh2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0274">FAD</keyword>
    <keyword evidence="6 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-0520">NAD</keyword>
    <keyword evidence="8 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00006743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC56707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="296" mass="31845" checksum="25649622536C520B" modified="2016-01-20" version="1">MVTGAGRSLGELIREGGRSYSFEFFPPKDEAGEAQLWEAIRALEPYRPTFVSVTYGAGGSTRDKTVAITGRIARETSLIPMAHLTCVGHTRDELESILDAYDAEGVAHVLALRGDPQEGPRADWTPTDGGLNYAVELVELARARGSFRVGVAAFPEGHPSAESLDHDADVLVAKARAGAEFAVTQMFFRASDYFGLVERVRARGVDMPILPGIMPILNLSAIRRQGELIGTSVPEEIVERISAHDGDAAAVRAEGIRIAAELCDELLAGGAPGLHFYTLNRSKATLEIFEALQITV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMI8</accession>
    <name>A0A0Q8VMI8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Methylmalonyl-CoA epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03055</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methylmalonyl-CoA epimerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892828.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56809">
        <property type="protein sequence ID" value="KRC56809"/>
        <property type="gene ID" value="ASE19_03055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1335734at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07249">
        <property type="entry name" value="MMCE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017515">
        <property type="entry name" value="MeMalonyl-CoA_epimerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03081">
        <property type="entry name" value="metmalonyl_epim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="2">
        <location>
            <begin position="14"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="16257" checksum="9A0FCDAB9EDFDCB6" modified="2016-01-20" version="1">MSITDGVPTHLFTAIDHVGIAVPDLDEAIAFYRDNFGMHVAHEETNEEQGVREAMVAVGDTDSKIQLLAPLNADSTIAKFIDRSGPGLQQLAYRVTDLDQVSAILRERGLRLLYPEARRGTANSRINFVHPKDAGGVLVELVEPAADGGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMP1</accession>
    <name>A0A0Q8VMP1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_02925</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892805.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56787">
        <property type="protein sequence ID" value="KRC56787"/>
        <property type="gene ID" value="ASE19_02925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="88184at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04879">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00926">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="2 4" id="KW-0408">Iron</keyword>
    <keyword evidence="3 4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="5">
        <location>
            <begin position="5"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="706" mass="76965" checksum="02210EB543684490" modified="2016-01-20" version="1">MRDVAEQRVGVCNLCEATCGLLLTIDAGRVTGVRGNPDDPLSRGHICPKGVAIGDIHADPDRLRRPVRRIGRGPDARWEEIGWDEALDLVADRVAATINEHGDDAFALYLGNPNAHSLGALTHGIAVAQSFRTRNKYSATSVDQLPHQLIGHLLYGHQLLLPVPDIDRTSYFLVFGANPMASNGSLMTVPDFPGRLRELQARGGRMVVFDPRRTETARVADEHHFVRPGTDAWVLLAMLHTLFAEGLTRPPSYVDGLDAVERALADFTPAAAEQASGVPADVIVRIARELAAADGAAAYGRMGVSTQEFGLVCQWAVQLLNLVTGNTDRVGGAMLTSPAIDAVGRGLLGRGHYDKFRSRVRQAPEFGGELPVSVLREEIETPGEGQVRTLLTIAGNPVLSTPDGGALDKALEGLDFCVAVDIYLNETTRHADVILPPTTLLERDHYDLPFHVLAVRDTARFTPATFPKDRDQRHDWEIFRDLYVRVQRRLDRKPPLKRRLATEARLRLSPTFIVGMLLRTGKSGVTISQLRKHPEGVDIGALRPGQLPGRLFTRSKRIAALPGLVSDDLSRLRAQELPTGDELLLIGRRHQRDCNSWMHNTDRLTKGKPRHHLLMHPADLAARGLVDGTVVTVTSRVGKVEVEVQATEDMMPGVVSLPHGYGHQREGVRLGIATGVVGVSINDLTDPERMDVSGNAALSGVPVTVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN17</accession>
    <name>A0A0Q8VN17_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Aconitate hydratase A</fullName>
            <ecNumber evidence="6">4.2.1.3</ecNumber>
            <ecNumber evidence="7">4.2.1.99</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">(2R,3S)-2-methylisocitrate dehydratase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">(2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="16">Iron-responsive protein-like</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="17">Probable 2-methyl-cis-aconitate hydratase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="14">RNA-binding protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="21" type="primary">acnA</name>
        <name evidence="21" type="ORF">ASE19_22845</name>
    </gene>
    <organism evidence="21 22">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="21 22" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21 22">Root79</strain>
        </source>
    </reference>
    <reference evidence="21 22" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21 22">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate = 2-methyl-cis-aconitate + H2O</text>
            <dbReference type="Rhea" id="RHEA:17941"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57429"/>
            <dbReference type="ChEBI" id="CHEBI:57872"/>
            <dbReference type="EC" id="4.2.1.99"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>citrate = D-threo-isocitrate</text>
            <dbReference type="Rhea" id="RHEA:10336"/>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
            <dbReference type="ChEBI" id="CHEBI:16947"/>
            <dbReference type="EC" id="4.2.1.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Carbohydrate metabolism; tricarboxylic acid cycle; isocitrate from oxaloacetate: step 2/2.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Organic acid metabolism; propanoate degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the aconitase/IPM isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="21">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.3" evidence="6"/>
    <dbReference type="EC" id="4.2.1.99" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892580.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58904">
        <property type="protein sequence ID" value="KRC58904"/>
        <property type="gene ID" value="ASE19_22845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="363064at2"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00718"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00946"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047456">
        <property type="term" value="F:2-methylisocitrate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003994">
        <property type="term" value="F:aconitate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047780">
        <property type="term" value="F:citrate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01580">
        <property type="entry name" value="AcnA_IRP_Swivel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.19.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.499.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044137">
        <property type="entry name" value="AcnA_IRP_Swivel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015931">
        <property type="entry name" value="Acnase/IPM_dHydase_lsu_aba_1/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001030">
        <property type="entry name" value="Acoase/IPM_deHydtase_lsu_aba"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015928">
        <property type="entry name" value="Aconitase/3IPM_dehydase_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006249">
        <property type="entry name" value="Aconitase/IRP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018136">
        <property type="entry name" value="Aconitase_4Fe-4S_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036008">
        <property type="entry name" value="Aconitase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000573">
        <property type="entry name" value="AconitaseA/IPMdHydase_ssu_swvl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11670">
        <property type="entry name" value="PTHR11670"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00330">
        <property type="entry name" value="Aconitase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00694">
        <property type="entry name" value="Aconitase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00415">
        <property type="entry name" value="ACONITASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53732">
        <property type="entry name" value="SSF53732"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00450">
        <property type="entry name" value="ACONITASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0408">Iron</keyword>
    <keyword evidence="11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="21" id="KW-0456">Lyase</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="22" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aconitase" evidence="19">
        <location>
            <begin position="69"/>
            <end position="607"/>
        </location>
    </feature>
    <feature type="domain" description="Aconitase_C" evidence="20">
        <location>
            <begin position="737"/>
            <end position="866"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="408"/>
            <end position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00019378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00030846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00031081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00031613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00031977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00033025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="Pfam" id="PF00330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="Pfam" id="PF00694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="EMBL" id="KRC58904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="939" mass="100402" checksum="0F5279CFE3861F85" modified="2016-01-20" version="1">MASKNSFGAKSTLDVDGKSYEIFRLDAVTGEGLDAASLPFSLKVLLENLLRTEDGADITAEDIKALAGWDETAQPDKEIQFTPARVIMQDFTGVPCVVDLATMREAMAELGGDATRINPLAPAEMVIDHSVMADVFGTPEAFQRNVEIEYERNRERYQFLRWGQGAFDDFKVVPPGTGIVHQVNIEHLARTVFTREVDGELLAYPDTCVGTDSHTTMVNGIGVVGWGVGGIEAEAAMLGQPVSMLIPRVVGFKLSGELPAGSTATDLVLTITEMVRKHGVVGKFVEFYGPGVSALPLANRATIGNMSPEFGSTIAVFPIDEETTTYLRLTGRSEEQIALVEKYAKEQGLWLDPDAEPRYSEKLELDLATVVPSIAGPKRPQDRVLVSEAKESFRGALVDYAGAPQDAQGYDEAVEESFPASDAPSHDPHQANGAPAPSNHLSAAPADGGRASTPVEVTLEDGTTFTLDHGAVTIASITSCTNTSNPSVMIGAALLAKKAVEKGLTRKPWVKTTLAPGSQVVSDYYDKAGLTPYLDKLGFNLVGYGCVTCIGNSGPLIPEVSAAVNENDLAVVSVLSGNRNFEGRISPDIKMNYLASPPLVVAYALAGSMDVDLFNDALGQDADGNDVFLKDIWPSPAEIEETIAGAINSQMFADSYADVFKGDERWRSLPTPEGNTFTWDESSTYVRKPPYFDGMPDQPAPVTDIDGARVLLKLGDSVTTDHISPAGSIKADSPAGKYLTENGVAPRDFNSYGSRRGNHEVMIRGTFANIRLRNQIAAGTEGGFTRDFTVDDGPVTTVYDASVNYQAAGIPLVVLAGKEYGSGSSRDWAAKGTSLLGVKAVIAESYERIHRSNLIGMGVIPLQYPEGQNAESLGLTGEETFSIAGITALNDGTTPSTVKVTTDTGVEFDAVVRIDTPGEANYYRNGGIMQYVLRNLLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNI2</accession>
    <name>A0A0Q8VNI2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22950</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58923">
        <property type="protein sequence ID" value="KRC58923"/>
        <property type="gene ID" value="ASE19_22950"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1050.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029229">
        <property type="entry name" value="Alkyl_sulf_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039543">
        <property type="entry name" value="POX18/UbiT/NSL-TP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003033">
        <property type="entry name" value="SCP2_sterol-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10094">
        <property type="entry name" value="PTHR10094"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14864">
        <property type="entry name" value="Alkyl_sulf_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02036">
        <property type="entry name" value="SCP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SCP2" evidence="1">
        <location>
            <begin position="62"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="Alkyl_sulf_C" evidence="2">
        <location>
            <begin position="199"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="32889" checksum="3C1725AFF1B337EF" modified="2016-01-20" version="1">MTWAALVEAPPTVVAAFLRDADAVALVDAIRAASDDELVALTQDAQRGSSVVEGVLHRLTDLAVPAQLAGMDCRVRWESATRAGGSHVLTFRDGAVDVAPGTGTTDVVVRGSDLQLLRLVAGQLDVAVAYLGGRLALSGTSSTALALAALFAVDGTAPVTGQPVDARDIDPVDIARVLHGVPADHLRSVLASDFRPVILEEIFERMPAFVNGRKAAGVQITVGFRLTGRPDGEVDRYVLRLRDGQATVLAGAAADAVDRQDRHATVTCEAADFLRLVTGHLSAVSGVLRGQLKVRGDKTAALRLNAAFDIPTAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP70</accession>
    <name>A0A0Q8VP70_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23265</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892512.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58975">
        <property type="protein sequence ID" value="KRC58975"/>
        <property type="gene ID" value="ASE19_23265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1697536at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029064">
        <property type="entry name" value="L30e-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001537">
        <property type="entry name" value="SpoU_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013123">
        <property type="entry name" value="SpoU_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00588">
        <property type="entry name" value="SpoU_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00967">
        <property type="entry name" value="SpoU_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55315">
        <property type="entry name" value="SSF55315"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SpoU_sub_bind" evidence="1">
        <location>
            <begin position="34"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="26865" checksum="A8195FC47E59FF78" modified="2016-01-20" version="1">MPDQAVPLTAGNSRVKEARKLHRRPERSGRRCFLADGPKAVEGALGAGVVVEVFVTPDAARQYADLLVGAPVTLVDDRALGGLSDSVNPAGLVAVCRFLDRQLPEAPRLLTIAADVRDPGNAGNLVRTTDAAGGDGVVLAGDAVDAYNPKAVRASVGSLFHLPVVTERDPAAAVRAAQAAGLVVLAADGGGEVDLFEADELLARPTAWLFGNEAWGLPDELGALADHRVRIPIPGRAESLNLATAAAVCLYASARAMMNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP91</accession>
    <name>A0A0Q8VP91_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Acetyl-CoA acetyltransferase</fullName>
            <ecNumber evidence="6">2.3.1.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_04395</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.9" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894354.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54727">
        <property type="protein sequence ID" value="KRC54727"/>
        <property type="gene ID" value="ASE19_04395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="330994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003985">
        <property type="term" value="F:acetyl-CoA C-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="5">
        <location>
            <begin position="281"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="2">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="360"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="405" mass="42056" checksum="AC5FEA47B7DC714B" modified="2016-01-20" version="1">MPEAVIVSLARSPIGRAFKGSLKDMRPDDLTVQMIHAALAKVPELDPVDIEDLMLGVGQPSGEAGFNIGRTVGVLAGLDHLAGVTVNRYCAASVQTTRMALHAIKAGEGDVYISGGVETISRYQEGWADGPAGSENPLFAAAQARTAAAAAGGPMWSEPRAEGLLPDAYMSMGLTAENVAQFKGVSREDQDAFAARSQNRAVAAIDSGFWAREITPVTLPDGTVVSADDGPRRGVTTETLAGLKPVFRPDGSVTAGNCCSLNDGAAAIVIMSDTKAKDLGLTPLARIVSTGVSGLSPEIMGLGPVDASRLALARAGMTMNDIDLVEINEAFAAQVIASARELKIDEDRLNVNGGAIAVGHPFGMTGARITGTLINSLQWHDKQFGLETMCVGGGQGMAMVIERLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQJ6</accession>
    <name>A0A0Q8VQJ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">FAD-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01100</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896689.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59652">
        <property type="protein sequence ID" value="KRC59652"/>
        <property type="gene ID" value="ASE19_01100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="453021at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="474" mass="49607" checksum="9CEC078A90F8A68E" modified="2016-01-20" version="1">MSTAVVVGSGPNGLAGAIRLAQAGLSVTVVEAHERPGGGTRTSELTLPGLLHDDCAAFHPTGVASPFFRSLDLEQHGLRWLWPEVDLAHPLDDGRAGLAARDLASSVQSLGVDSARWERMFAPIVRTFDALMDEVLQPVAHLPRHPVTLGRFGLKAALPATVLARRFRDEPARALFTGVAAHKFGRLDGVLSASVGLMLAGSAHAVGWPVAQGGTEAITRALLASLASYGGRVVTGVRVTSLDQLRELTGSAPDVVLLDTAPAGALEILGSRLPARVRRGLTRFSYGPSAFKVDLAIEGDIPWTNPGCRRAGTLHLGGSAREIAAIEAATVRGEMPERPFVLLGQQYLVDPSRSAGGLNPVYAYAHVPHGYGGDATDAIIGQIERFAPGFRDRIRAVATRGPAALEEHNANYVGGDISAGANTARQIVFRPRVAADPYSLGIDGVYLCSSATPPGGGVHGMGGFNAAEAALRRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQL1</accession>
    <name>A0A0Q8VQL1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01295</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896653.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59688">
        <property type="protein sequence ID" value="KRC59688"/>
        <property type="gene ID" value="ASE19_01295"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="227" mass="24159" checksum="5570B21CE29A89A0" modified="2016-01-20" version="1">MSEPVVAKVWWEAPHQGMLERFLSASDVVAFGRGAGCAIRIGHAPVYLENVPRVWGELSWHRGRVVVQNVSTRWGLQLVSGSSGGEVSRVEVPPGAAASSPERRFEIIGQAPQAQIRIEVLAAVRGAVDAALLGDDPPSFVPFSLTPTQQLIGAAIVEPLHRGRARRPGYAEVAAASNYSERTVREAVAAMDGLFVLHRLADPDGPSDALDRVAQALRLHSALLGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQS1</accession>
    <name>A0A0Q8VQS1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltransf_25 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02890</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892799.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56781">
        <property type="protein sequence ID" value="KRC56781"/>
        <property type="gene ID" value="ASE19_02890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1664438at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="24"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="171" mass="19143" checksum="8DD2593E9A74A90E" modified="2016-01-20" version="1">MVNKIPARIRWAVDFMDVQPNDHVLEIGCGNGAAADLICRRLEGKGKMFAIDRSEAGVDRTKQRCAAHIEAGRLTVRQIDLATLRVPVKRLTKVFAFDVNLFWVRDAAEEIALLHERLMPGGSVNLFFDTSRPEQVSDILEKTSAQLRDGGFRVYIVDSKMPPVIGIIGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQS3</accession>
    <name>A0A0Q8VQS3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Aryl-alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_02830</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892787.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56769">
        <property type="protein sequence ID" value="KRC56769"/>
        <property type="gene ID" value="ASE19_02830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1859760at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PKS_ER" evidence="3">
        <location>
            <begin position="13"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="367" mass="38253" checksum="E766948A4F48B364" modified="2016-01-20" version="1">MKTTAYLVEQPGGDFVAAEVELEEPRDDEVLVRIVATGLCHTDLTVPTMLPQEMMPTVVGHEGTGVVEKVGAAVTGIEVGDHVVLSFRSCRACGPCRAGDVGYCEQSLLLNYMGMRADGSTTMKRGEQTVFGNFFGQSSLARHALAYADNCVVVDKGLDLARLAPFACGFQTGAGTVLNVLDPRTDEPIVVFGAGAVGLAAVAVARGLGVETVVVVDPVAARRTVAEGYGATALDPTDEAAGPVEERVRALTGGGAAYAIDTTAIAAVVLQAQRSLRSRGLLVALGLGAPEYTIDAIDLLQSGKVVRSSIEGEADPLETIPQLIALREAGKFDVDHLVTTYPFEKIADAVADSKSGAVVKPVLVWGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQT4</accession>
    <name>A0A0Q8VQT4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03080</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892832.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56813">
        <property type="protein sequence ID" value="KRC56813"/>
        <property type="gene ID" value="ASE19_03080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1297440at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="236"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="297"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="120"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="17"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="236"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="267"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="297"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="422" mass="45356" checksum="79179C9B11AFCF65" modified="2016-01-20" version="1">MSDQGLSIFDDEPTPNEESAPVTTKSTDEEPTQVIPAVKTAETPTVRAQATPRPAAQPPAAAPRAASPAPATSPRPAGASSATARPVGFSAPSGGLPIVRKGGYDRDAVDAQIRQLSGEKATLGASLNESEQRVIELEKELAKVRAELSESDNPSYAGLGGRASAMLRLAEEEAGEIRTTAEADAAEIRDQATRDAKAIRAEAAREADDMRAVQLRELEENRTRLLTDAEQERALARSEAEDLRASARREADQLRLAAQQEVSEQRSQAQREIEQARTAVDREVQEARRALAVEKERLAREATDHHASAVAETRRLVEESEQRANAAEERAAEASKQATQNRAAAQSESEALLGRARREAEQIIASARVQAEALAAAGDSELQREISSRRAELDRLTKRRAAITAQLSSLADLVAGFGEDES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQY7</accession>
    <name>A0A0Q8VQY7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="15">PTS lactose transporter subunit IIC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">ASE19_03370</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892878.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56861">
        <property type="protein sequence ID" value="KRC56861"/>
        <property type="gene ID" value="ASE19_03370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1810962at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005351">
        <property type="term" value="F:carbohydrate:proton symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022877">
        <property type="term" value="F:protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009401">
        <property type="term" value="P:phosphoenolpyruvate-dependent sugar phosphotransferase system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00211">
        <property type="entry name" value="PTS_IIA_fru"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05569">
        <property type="entry name" value="PTS_IIB_fructose"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016152">
        <property type="entry name" value="PTrfase/Anion_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002178">
        <property type="entry name" value="PTS_EIIA_type-2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036095">
        <property type="entry name" value="PTS_EIIB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013011">
        <property type="entry name" value="PTS_EIIB_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003501">
        <property type="entry name" value="PTS_EIIB_2/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013014">
        <property type="entry name" value="PTS_EIIC_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004715">
        <property type="entry name" value="PTS_IIA_fruc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003353">
        <property type="entry name" value="PTS_IIB_fruc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006327">
        <property type="entry name" value="PTS_IIC_fruc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00359">
        <property type="entry name" value="PTS_EIIA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02302">
        <property type="entry name" value="PTS_IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52794">
        <property type="entry name" value="SSF52794"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55804">
        <property type="entry name" value="SSF55804"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00829">
        <property type="entry name" value="FRU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00848">
        <property type="entry name" value="fruA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01427">
        <property type="entry name" value="PTS_IIC_fructo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51094">
        <property type="entry name" value="PTS_EIIA_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51099">
        <property type="entry name" value="PTS_EIIB_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51104">
        <property type="entry name" value="PTS_EIIC_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0598">Phosphotransferase system</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0762">Sugar transport</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="305"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="363"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="404"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="429"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="460"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="502"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="550"/>
            <end position="575"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="587"/>
            <end position="604"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="640"/>
            <end position="669"/>
        </location>
    </feature>
    <feature type="domain" description="PTS EIIA type-2" evidence="12">
        <location>
            <begin position="3"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="PTS EIIB type-2" evidence="13">
        <location>
            <begin position="171"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="PTS EIIC type-2" evidence="14">
        <location>
            <begin position="297"/>
            <end position="679"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC56861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="687" mass="69342" checksum="7F6E1644CE840B71" modified="2016-01-20" version="1">MAELMTAALVSLDDELGADKDAVIAALAARVTEAGRATDVEQLRADLHAREAKSATGMKDGIAIPHCRSTAVTEPTLAFARLQPGVDFGAKDGVADLVFLIAAPEGGGNAHLQILAKLARSLVKPEFTDALRSAATPEAVVAIVQAVVDPPAAPAQAPAPAVAGPAVVRRLVAVTSCPTGIAHTYMAAEALEAAASRAGVEIAVETQGSAGSTPLPAATIAAADAVVFATDVGVRDKHRFAGKPVVSMGVKRPIDDGDAVIAEALRAADDPAAARVEGSATAGDPTATAGESWGGRARRVLMTGVSYMIPFVAAGGLLIALGFLLGGYDSANVAGDILVKHSLFDPPSAAAYGLDHVAFDSGVLLYLGVLLFVIGKAAFALFVPALAGYIAYAIADRPGLAPGFIMGALATNLAAFGSVGAVSPDAPQTGFIGAIVGGTLAGVIALWVSRWRVPTWARGLMPVLVIPLVTSIVAGLIMLLLLGRPITWLMERLSDGLNEMSGSNAIILGVVLGMMMAFDMGGPLNKVAYSFAVVGIGGASLASDAPELKIMAAVMLAGMVPPLALALATVVRPNLFTSAERENGKAAWLLGASFISEGAIPFAAADPLRVIPSIVLGSAVTGGLAEALDVSLRAPHGGIFVLFAVDGVLGFFIALVAGTVVAAAAVVALKSIGRTTPVDVTLETVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRB7</accession>
    <name>A0A0Q8VRB7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Plastocyanin-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_04115</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56993">
        <property type="protein sequence ID" value="KRC56993"/>
        <property type="gene ID" value="ASE19_04115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011707">
        <property type="entry name" value="Cu-oxidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002355">
        <property type="entry name" value="Cu_oxidase_Cu_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="PTHR11709"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07732">
        <property type="entry name" value="Cu-oxidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00080">
        <property type="entry name" value="MULTICOPPER_OXIDASE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="5"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="101"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="143"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="4">
        <location>
            <begin position="237"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1162"/>
            <end position="1193"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="1177"/>
            <end position="1191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1527" mass="160362" checksum="533DE8E4EE285EEB" modified="2016-01-20" version="1">MTADLLADLVAGLLCCVVGSAWLTLLEPSRHAGHGDAPGGFLLQLGALVGFTLVPSVCAVIAVRTALRPTGVRRDLLLVAPAAALADAVGAQLHASSAGVAASPATLLADGAMLLVALLPLLALCHEVRRAAGSLSPRRVRAALTLATGAATMLTTCALTSVASPASAAPDCLAGGPADTSFDVTAIDVDIPVNRFGDHDPQGAMYTLTDAIPAIRHQEQTQQVSIGLRDDPIQPLVIRANEGDCVAITFTNHTSRGPVGMHVDGLRFALSSSGDQVGTNPSSAAAQGDTVAYRFAVPDDARAEGGHHIHPGPGMRAAIDHGLFGSLVVEPRGSTYWDATTAGTPLASGWEAIIKPGGPSLPCDPDSPQPTCAFREAAILHHEIGNDNEQLTSNDGTLVPLVDNTTGSYRPGSFAINYRSESFRNRLLAFPSAKSHAYSSYTFGEPSTPMMRGYLADPTKIRLMHAGAEKFHIFHLHGGGDRWRFNPVSDPSYAYADTGLRKDPPVALSPSQRLDSQSVGPGESYNLELEGGAGGVQQSAGDFLYHCHIAKHYVSGMWALWRVFDTLQPDLVPLGDRAAPPAAVSSSGLIGRSFGGTKITKNNLDAWIRPQLPPSGIPASDQDPTVMDWKVAGTASAPVYLGAPADPTDFVESPKLVSGQPNLLLVDQGHVVSGRPTILFNPSNGRPAYPLLRPHIGGRPPFTGNGHTGAPYLGNNADATSGGLTTDPWARRPDGLCPAGRTTRTYNVVAVAKPIRRTPTVVDQDGKVFVLAKDKAALLASPDGGEPLAIRANQGDCVALTLNSEVPDSSASDGWSKVSMHIHHLQFDVQGSDGVSAGFAYEHSVRPYNQVAPTLVRNVLKGSTSITLTSVAGLTGVDANGKAATKWIAIGQGTEDIEIRQIRSVSTSTRTVSLTAGLSKAHAAGQFAGTEFLQSRWYPDTLLDNIFWHDHIDGIHSWGHGLVGQIIIEPKGSTWTDPVTGKPVDSGTLVDIHTTNPMAPGLVNGSFRELALWTINDNDQSAYSTLNLRANPLAYRPDKAHQFSSWTYGDPLTPLPKLYPGDPLVIRALSISPTLDTLHFLGARTVLEPRQMAGGEPDGTVIDAIHSGISERFTLVLNGQPDSMRLRPGDYLYANGLEARTQQGAWGIVRVLPGLVPGLQPLPGVTTPSTPYTEPTSTGGAPPPGMPGNPCPAGAPARSFDLTALDRSNVYNGARTAYVPTVDVNAVIQRTKQPEPLVLHVVAGECVTVVLRNRLLTPVGFSMAKLDREAGSGGVDVGYAPEQNTAPGATRTYRYYVPTAQIGSGAIGDLANATSLKNGLYGAVVVAPASTVAGQPTIFRDPVTGALKDIGAQVLVRAPGQDRPNYRDFTVTLADDDGAIGRDLMPYPTDANEGRTLLGYQAAPTGDGAGAFTDPGAVATMTGYAGDPTLVHVLLAPGSENSHVFTLGGLRWPQDRLIPYSDWMTAQGLGPWETFDLDVVGGAGGGEPGDYVYGDGRRPFTAVGAWGVQHVLPADSCSVRRVDATTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRC7</accession>
    <name>A0A0Q8VRC7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03925</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56960">
        <property type="protein sequence ID" value="KRC56960"/>
        <property type="gene ID" value="ASE19_03925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1683279at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="212" mass="22500" checksum="72234EB013933897" modified="2016-01-20" version="1">MSMTSKAPERNEDGGFTLPEVVIVIAIMSVILVALTGVLISYFRTTVDAESRMTESNDVQFAAAYWQRDVASIGVRSAYNTATKTFPLAQSVNVSPGCTLPTGTTLVTLAWTEYTSDVSTNVGEIVTVSYVATGASAPYELVRVRCTGTTVDSKVEVAHNLSMVQVATCDVACSGTGNNVPTVVNLPLSILDQEGNRTVAYTATLSGERRQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VU34</accession>
    <name>A0A0Q8VU34_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23610</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893952.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57746">
        <property type="protein sequence ID" value="KRC57746"/>
        <property type="gene ID" value="ASE19_23610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1470937at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360387" evidence="2">
        <location>
            <begin position="34"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="283"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="308" mass="30304" checksum="ED53C9E179F16354" modified="2016-01-20" version="1">MKKTRTLASAAGAVVLVTGAASFAVLGGGTASAAGNPSSAYGLELSLAGNAVIGADTIQVVSTDGKPVSDDLVNVDALNPLLSGGVVQVSAENGKARAAVTGLGVGDGLLSQLPSQVTDQLGSACETLTDALDPITGAIDDTVLGTVLGQLGGALDQIGDATDGTPLDLSLLGALDLSNLSTDRLKGLCDVLAGDTQLVDLGSVIAQCNGDTGTTDVTDASVLGVNLDIPTEPNGKVAIEGLVEITANEQIKNADGTFTVNALHLNLLGQIDLVVASATCGEVTSDGGTDPTDAPTPTPVESHVPVTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUA7</accession>
    <name>A0A0Q8VUA7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 2">UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase</fullName>
            <ecNumber evidence="1 2">6.3.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">D-alanyl-D-alanine-adding enzyme</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">murF</name>
        <name evidence="5" type="ORF">ASE19_02385</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 2">Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 2">
            <text>ATP + D-alanyl-D-alanine + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioate = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine</text>
            <dbReference type="Rhea" id="RHEA:28374"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57822"/>
            <dbReference type="ChEBI" id="CHEBI:61386"/>
            <dbReference type="ChEBI" id="CHEBI:83905"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 2">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the MurCDEF family. MurF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.10" evidence="1 2"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892713.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56695">
        <property type="protein sequence ID" value="KRC56695"/>
        <property type="gene ID" value="ASE19_02385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1861122at2"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047480">
        <property type="term" value="F:UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008766">
        <property type="term" value="F:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02019">
        <property type="entry name" value="MurF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035911">
        <property type="entry name" value="MurE/MurF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005863">
        <property type="entry name" value="UDP-N-AcMur_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63418">
        <property type="entry name" value="SSF63418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01143">
        <property type="entry name" value="murF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 2" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1 2" id="KW-0132">Cell division</keyword>
    <keyword evidence="1 2" id="KW-0133">Cell shape</keyword>
    <keyword evidence="1 2" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 2" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase_M" evidence="4">
        <location>
            <begin position="100"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="3">
        <location>
            <begin position="311"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="453" mass="46079" checksum="1E4D78B33C62C034" modified="2016-01-20" version="1">MIPLRLSEIASVVGGTLHGDDVLVSGPAYVDSRTPVPDGLFVAVVGERVDGHAYAAGAHAVLGSRPTEAPTVVVDDPVSALGRLARHVVDSLDVTVLAMTGSQGKTGTKDYLAAVLRTLAGDDAVVATAANNNNELGVPLTVLRADAGTRFLVVEMGARGIGHITYLCSIAPPDIAAVLNVGTAHVGEFGGREQIARAKGEIVEALGPAGTAVLNADDALVAAMAPRTDAALVTFGTTGTVHWGPVELDELGRPGFRLARGEDAADVQLLQTGLHQVQNAAAAAAMATSAGFALADVARALGGAAAASRWRMEVSERSDGLVVVNDSYNANPDSMRAALEALASIGASRGRRTVAVLGEMKELGSEHDAGHRAVGADAARLGVDVLLVVGEAARGIAEAAADGAGEVIVTVGREDAASWLRQNAGPEDVVLVKASRGVALEWVAEQVLEGTTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUL5</accession>
    <name>A0A0Q8VUL5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Corrinoid adenosyltransferase</fullName>
            <ecNumber evidence="4">2.5.1.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Cob(II)alamin adenosyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Cob(II)yrinic acid a,c-diamide adenosyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Cobinamide/cobalamin adenosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_03165</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>2 ATP + 2 cob(II)alamin + reduced [electron-transfer flavoprotein] = 2 adenosylcob(III)alamin + 3 H(+) + oxidized [electron-transfer flavoprotein] + 2 triphosphate</text>
            <dbReference type="Rhea" id="RHEA:28671"/>
            <dbReference type="Rhea" id="RHEA-COMP:10685"/>
            <dbReference type="Rhea" id="RHEA-COMP:10686"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16304"/>
            <dbReference type="ChEBI" id="CHEBI:18036"/>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:58307"/>
            <dbReference type="EC" id="2.5.1.17"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>2 ATP + 2 cob(II)yrinate a,c diamide + reduced [electron-transfer flavoprotein] = 2 adenosylcob(III)yrinate a,c-diamide + 3 H(+) + oxidized [electron-transfer flavoprotein] + 2 triphosphate</text>
            <dbReference type="Rhea" id="RHEA:11528"/>
            <dbReference type="Rhea" id="RHEA-COMP:10685"/>
            <dbReference type="Rhea" id="RHEA-COMP:10686"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18036"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:58307"/>
            <dbReference type="ChEBI" id="CHEBI:58503"/>
            <dbReference type="ChEBI" id="CHEBI:58537"/>
            <dbReference type="EC" id="2.5.1.17"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Cofactor biosynthesis; adenosylcobalamin biosynthesis; adenosylcobalamin from cob(II)yrinate a,c-diamide: step 2/7.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the Cob(I)alamin adenosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.17" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892842.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56823">
        <property type="protein sequence ID" value="KRC56823"/>
        <property type="gene ID" value="ASE19_03165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1401910at2"/>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00233"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008817">
        <property type="term" value="F:cob(I)yrinic acid a,c-diamide adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016030">
        <property type="entry name" value="CblAdoTrfase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036451">
        <property type="entry name" value="CblAdoTrfase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029499">
        <property type="entry name" value="PduO-typ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12213">
        <property type="entry name" value="PTHR12213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01923">
        <property type="entry name" value="Cob_adeno_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89028">
        <property type="entry name" value="SSF89028"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00636">
        <property type="entry name" value="PduO_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Cob_adeno_trans" evidence="5">
        <location>
            <begin position="7"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU366026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="192" mass="21240" checksum="DDB1F965A6930A99" modified="2016-01-20" version="1">MVNLTRIYTRTGDAGETRLGDMSVTTKTDLRLLAYADVDEANAHLGVALATGELEDDVVAVLTHVQNDLFDVGADLCTPVVADPEYPPLRIEQDYVDRLEGWCDHYNEDLEKLRSFILNGGTPAAAQLHVARTVIRRAERGAWAAYEVHGEAMNKLAITYLNRLSDLVFILARYANRAQGDVLWVPGGERGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUV1</accession>
    <name>A0A0Q8VUV1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Abortive infection protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00930</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896722.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59619">
        <property type="protein sequence ID" value="KRC59619"/>
        <property type="gene ID" value="ASE19_00930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1758460at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071586">
        <property type="term" value="P:CAAX-box protein processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003675">
        <property type="entry name" value="Rce1-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02517">
        <property type="entry name" value="Rce1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="135"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="167"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="208"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="231" mass="24992" checksum="D1A76D65CEAA3C7B" modified="2016-01-20" version="1">MVQRWVRRSLWDVVPRDHRESDVALRRRQVVTVVVVLLGAAMLGVSLRIEPGSTWFYPATLAMAVIWTVGAFAAGPLHLGRITSWRSEALVRPVVPPVLIGLTLAAVFVVGGLVVREIPWLDRQVRSVVDFADQGSVPLLVVVTLVNGIAEELFFRGAAYAALPRHPVAWTSVAYVLATLATGNVMLTFAAVVLGVVVGLERRASGGILAPILTHCSWSLTMLFALPLLFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VV39</accession>
    <name>A0A0Q8VV39_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Esterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02625</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57031">
        <property type="protein sequence ID" value="KRC57031"/>
        <property type="gene ID" value="ASE19_02625"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052689">
        <property type="term" value="F:carboxylic ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012354">
        <property type="entry name" value="Esterase_lipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017388">
        <property type="entry name" value="Esterase_lipase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="4">
        <location>
            <begin position="9"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="1">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="1">
        <location>
            <position position="214"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="3">
        <location>
            <position position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR017388-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR017388-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR017388-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC57031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="242" mass="26134" checksum="3335F0897C0C22D9" modified="2016-01-20" version="1">MTGGRRIGVLLSHGFTGSPASMRPWGEHLGALGYGVAVPRLPGHGTTWQDLNTHRFADWYGEIARTFDALRAEHDAVVVGGLSMGGALVLRLAADRGDEVAGVMVVNPALATKRFDVKLLPVIKHLVASFPAIANDIKKQGVDENGYDRTPLKAIHSFIGSWPALIADLPRISAPLVYFRSPEDHVVDGKSEPIILDRVSSTDVTRIELPESYHVATLDNDAPTIFARSAEFIARVTAPTRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VY07</accession>
    <name>A0A0Q8VY07_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Vitamin B12-dependent ribonucleotide reductase</fullName>
            <ecNumber evidence="4 10">1.17.4.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_00985</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>[thioredoxin]-disulfide + a 2'-deoxyribonucleoside 5'-diphosphate + H2O = [thioredoxin]-dithiol + a ribonucleoside 5'-diphosphate</text>
            <dbReference type="Rhea" id="RHEA:23252"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:73316"/>
            <dbReference type="EC" id="1.17.4.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 10">
            <name>adenosylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the ribonucleoside diphosphate reductase class-2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.17.4.1" evidence="4 10"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896712.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59629">
        <property type="protein sequence ID" value="KRC59629"/>
        <property type="gene ID" value="ASE19_00985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="357568at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050897">
        <property type="term" value="F:cobalt ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004748">
        <property type="term" value="F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071897">
        <property type="term" value="P:DNA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02888">
        <property type="entry name" value="RNR_II_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013678">
        <property type="entry name" value="RNR_2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000788">
        <property type="entry name" value="RNR_lg_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013344">
        <property type="entry name" value="RNR_NrdJ/NrdZ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08471">
        <property type="entry name" value="Ribonuc_red_2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02867">
        <property type="entry name" value="Ribonuc_red_lgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01183">
        <property type="entry name" value="RIBORDTASEM1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02504">
        <property type="entry name" value="NrdJ_Z"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0846">Cobalamin</keyword>
    <keyword evidence="8 10" id="KW-0170">Cobalt</keyword>
    <keyword evidence="7 10" id="KW-0237">DNA synthesis</keyword>
    <keyword evidence="10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ribonuc_red_2_N" evidence="12">
        <location>
            <begin position="43"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="RIBORED_LARGE" evidence="11">
        <location>
            <begin position="147"/>
            <end position="682"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00014409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU364064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF08471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC59629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="957" mass="104108" checksum="55E8C822233F895E" modified="2016-01-20" version="1">MTETASNPTTGLKIERIFSTEGVHPYDEITWERRDVVQTNWKTGETVFEQLGVEFPDFWSLNASTIVTTKYFRGAVGTPERETGLRQLIDRVVSRYVAAGIEHDYFATTADAEIFEHELTWLLVNQYFSFNSPVWFNVGTKSPQQVSACFILSVDDSMDSILNWYKEEGFIFKGGSGAGLNLSRIRSSKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFVETKWREEDKIRALRDAGFDMDLGGKDITSVQYQNANNSVRVNDEFMRAVENGTEFGLRSRMDGSVIETVDARSLFRKISEAAWACADPGLQYDDTINDWHTNPETGRITASNPCSEYMSLDNSSCNLASLNLLKFLRDDDTFDAPLFAKAVEFIITAMDISICFADFPTEPIGKTTRDYRQLGIGYANLGALLMAMGLGYDSDGGRAMAATITSLMTGTSYRRSAELASIVGPYAGYARNAEAHNRVMRKHQAANDDVRTLHIADAEVHKLATEEWAKVVDLGKTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSLQIVNQTIPRALKKLGYEPELVEAIVAYIGEHGHVVDAPGLKPEHYEVFDTAMGERSLKPMGHVKMMAACQPFLSGAISKTVNLPESATVEEIEQIYMESWKLGLKATAIYRDNCKVGQPLADGGGKAKKDAADAADAAAEAKVIEKVVEKVVYAPTRKRLPKSRLARTTSFTVAGAEGYMTSGAHDDASLGEIFLKLGKQGSTLAGVMDAFSIAVSIGLQYGVPLETYVSKFTNLRFEPAGLTDDPDVRMAQSIMDYVFRRLALDYLSFDERSALGIYSADERQRHLETGSYEPVEETGSASELVETAPVAKGAPVVEDVVEAEVDEDPLAGAPEVKVAKTTAELLEQITGHAVDSPLCMTCGTKMRPAGSCYVCEGCGSTSGCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VY44</accession>
    <name>A0A0Q8VY44_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01230</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896664.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59677">
        <property type="protein sequence ID" value="KRC59677"/>
        <property type="gene ID" value="ASE19_01230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1669613at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="229" mass="24697" checksum="F9274621CEA39DCB" modified="2016-01-20" version="1">MTGPAYDAALHLLDRQVVDSEGRMVCKVDDLELTVGDGGELVPTGLLVGLPALLPRFGRRIGAELTRTHARIFEAQAHRTSPDVVDIDLVEEVDSEVRLSVPRAGLLRPRDDDPSGPERVRLGDLLGLPVTAAPGHGLHRGSRLLDVRLVAVPDGRRHVVDALVVGPGRPGALLGYDRRSEPGPWLVADLVRWLHRHARVVGVGPEVVIDREDRVVRVGPGASVRPLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VY65</accession>
    <name>A0A0Q8VY65_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_01325</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial flagellin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896648.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59693">
        <property type="protein sequence ID" value="KRC59693"/>
        <property type="gene ID" value="ASE19_01325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1788350at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009424">
        <property type="term" value="C:bacterial-type flagellum hook"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013384">
        <property type="entry name" value="Flagell_FlgL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001492">
        <property type="entry name" value="Flagellin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046358">
        <property type="entry name" value="Flagellin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001029">
        <property type="entry name" value="Flagellin_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42792">
        <property type="entry name" value="PTHR42792"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00700">
        <property type="entry name" value="Flagellin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00669">
        <property type="entry name" value="Flagellin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02550">
        <property type="entry name" value="flagell_flgL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flagellin_N" evidence="3">
        <location>
            <begin position="16"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="Flagellin_C" evidence="4">
        <location>
            <begin position="217"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="296" mass="31118" checksum="E6051B02B6F2D3E4" modified="2016-01-20" version="1">MSIGRVTQRMLTEGSLDNLQRGLGRLARVQEQLSTGRVINRPSDNPTGTTSSMRLRSSLADQAQYSRNAQDGLGWLTQVDAALDSVTSTVGRARDLALQGANASASGPVAREALAVEVEGLRQELLSRANTKYLDSPVFGGVTAGTQAYDASGTYVGTLGDVNRRIADGVVVKVDVDGPTVFGDGATSVFAELDALATALRAGDKAGISASINTLNTRSDTITGARTAAGTRYQRLEHADLSASDAKISLTNQLSTIENADLAETTVELKLQEVAYQAALGATSRVMQPSLLDFLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VY80</accession>
    <name>A0A0Q8VY80_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00920</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896724.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59617">
        <property type="protein sequence ID" value="KRC59617"/>
        <property type="gene ID" value="ASE19_00920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2031580at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046041">
        <property type="entry name" value="DUF5999"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19462">
        <property type="entry name" value="DUF5999"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="59" mass="6427" checksum="AD1527606B5B0928" modified="2016-01-20" version="1">MCDHSPECPSAGDTDCCTAHVTADHSEQGWCRLCNGVILFDDGAYLTPEGRPMELRRSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W1I1</accession>
    <name>A0A0Q8W1I1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">zf-TFIIB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00645</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896765.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59575">
        <property type="protein sequence ID" value="KRC59575"/>
        <property type="gene ID" value="ASE19_00645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1847417at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027392">
        <property type="entry name" value="TF_Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13453">
        <property type="entry name" value="zf-TFIIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="zf-TFIIB" evidence="2">
        <location>
            <begin position="3"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="64"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="94" mass="11052" checksum="588CD1F7CD1D6C68" modified="2016-01-20" version="1">MRCPIDETTLVMSDRNGIEIDYCPQCRGVWLDRGELDKIIDRSVGMPAPQAAPQAAPQQGYPQYDDRRRPDDRRGDDRHYKKRKRESWLSELFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W1L3</accession>
    <name>A0A0Q8W1L3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidyl-tRNA hydrolase</fullName>
            <shortName evidence="1">PTH</shortName>
            <ecNumber evidence="1">3.1.1.29</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pth</name>
        <name evidence="2" type="ORF">ASE19_00865</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>an N-acyl-L-alpha-aminoacyl-tRNA + H2O = a tRNA + an N-acyl-L-amino acid + H(+)</text>
            <dbReference type="Rhea" id="RHEA:54448"/>
            <dbReference type="Rhea" id="RHEA-COMP:10123"/>
            <dbReference type="Rhea" id="RHEA-COMP:13883"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:59874"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:138191"/>
            <dbReference type="EC" id="3.1.1.29"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PTH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.29" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896734.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59607">
        <property type="protein sequence ID" value="KRC59607"/>
        <property type="gene ID" value="ASE19_00865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1676462at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004045">
        <property type="term" value="F:aminoacyl-tRNA hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00462">
        <property type="entry name" value="PTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1470">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00083">
        <property type="entry name" value="Pept_tRNA_hydro_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001328">
        <property type="entry name" value="Pept_tRNA_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018171">
        <property type="entry name" value="Pept_tRNA_hydro_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036416">
        <property type="entry name" value="Pept_tRNA_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17224">
        <property type="entry name" value="PTHR17224"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01195">
        <property type="entry name" value="Pept_tRNA_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53178">
        <property type="entry name" value="SSF53178"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00447">
        <property type="entry name" value="pth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01196">
        <property type="entry name" value="PEPT_TRNA_HYDROL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="197" mass="21088" checksum="749CB3CF5464838D" modified="2016-01-20" version="1">MTDTDVWLVVGLGNPGPSYAGHRHNIGYLVVDELASRMGSGFRAHKTGRADVVEGRLGAPGVGSARVVLAKSRSYMNESGGPVKALATFYKVPAERVIAIHDELDIDFGTLRIKKGGGDNGHNGLKSMRSSLGTGDFFRVRAGIGRPPGRQDVADFVLSNYGTTERKELPFQIDSAADAVESLIADGLEKTQQRFNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W1Q9</accession>
    <name>A0A0Q8W1Q9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01115</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59655">
        <property type="protein sequence ID" value="KRC59655"/>
        <property type="gene ID" value="ASE19_01115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028037">
        <property type="entry name" value="Antitoxin_Rv0909/MT0933"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14013">
        <property type="entry name" value="MT0933_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="67" mass="7024" checksum="80ADDC2BA9913291" modified="2016-01-20" version="1">MGFLDDAKDKLTDAVDSQGDKISDGLDKAADFASDKTGGKFDDKIDLGVDKAKDALDGLDGQDDDIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMK7</accession>
    <name>A0A0Q8UMK7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Adenosine deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_20370</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46213">
        <property type="protein sequence ID" value="KRC46213"/>
        <property type="gene ID" value="ASE19_20370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019239">
        <property type="term" value="F:deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001365">
        <property type="entry name" value="A_deaminase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006330">
        <property type="entry name" value="Ado/ade_deaminase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43114">
        <property type="entry name" value="PTHR43114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00962">
        <property type="entry name" value="A_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01430">
        <property type="entry name" value="aden_deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="A_deaminase" evidence="3">
        <location>
            <begin position="13"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="342" mass="36587" checksum="EE9129ACBB88D06A" modified="2016-01-20" version="1">MTSVLSNFIAGLPKAELHVHHVGSASPRIVSELAERHPGTVPSDPALLSEFFAFRDFAHFIEVYLAVVDLVRTPEDVRYLTYEIGRELAEGQAVRYAELTCTPYTSVLPDDPDRGMPIEAYTEAIEDARLAAERDFGLVLRWIYDIPGEAGIPAADATLRFALDHAPEGLVAFGLGGPEIGVPRDQFVPHFTAARAAGLRSVPHAGETTGPETIWTSLRGLGAERIGHGTSAAQDPELLAYLAEHRIPLEVCPSSNVATRAVASLAEHPLPVFVEAGVVVTINSDDPPMFGTTLNREYEIAADLLGLDESGVADLARASVGASFAPDDVKKRVLGEIDAHAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMZ2</accession>
    <name>A0A0Q8UMZ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21235</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896131.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46360">
        <property type="protein sequence ID" value="KRC46360"/>
        <property type="gene ID" value="ASE19_21235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2041282at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="183" mass="18926" checksum="47EA787AAB12C110" modified="2016-01-20" version="1">MLTVRRTPRQRVAVPAVLGSLESVAALVLAHVAAGGEVPQPLWLAAFGALVYAASGPVLRRRAGIRVVLPALVVVQVLGHAWLVALSPATHAGHGHDGAMLLGLSPSMLAAHGVAAVVTGVMWSLRRRATEVLLGWARTGVLPVPSAPRLPARTRLVVPRSAWLVAATPTRGPPVVVPATARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNB2</accession>
    <name>A0A0Q8UNB2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FRG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21875</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896241.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46472">
        <property type="protein sequence ID" value="KRC46472"/>
        <property type="gene ID" value="ASE19_21875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2043466at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014966">
        <property type="entry name" value="FRG-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08867">
        <property type="entry name" value="FRG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00901">
        <property type="entry name" value="FRG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FRG" evidence="1">
        <location>
            <begin position="336"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="642" mass="68402" checksum="8C81BCB433A13E5D" modified="2016-01-20" version="1">MDSDQASSDRTRLSTRALADSIESQGTFDESAIADAAGRALDDAARNAVGSPMVQMAIQRAVTNAVRGDAKGLAALGIQSSAVESAVNRAIASLVDTAVATPEVRLAIRRAVDQAVSRESSGLVALGIGDSTIRTAVGKAITELARTAVATPAVRDAIDKAIRGGRTGFAAFGPSLIESAVSTAVTSVAKESASSPEVRSAIDKAIRRDRSGLAGLGPSTVDAAVSRALTDAAKSAIHDPEIQAAVDRAVRHQASSGSYAADPAVVRELGKHLPEEDAVQEPTAEQRHARTPLVPSDADYSSQFENPGSLFSAHEARIDSFAALTEAVGALTARNPGLKFVWRGQQDASWGLHSSLYRSLMGHHQLGTKERGGADSPERTFPDETAMLDAELAILAEAADWRMSDLSALELFARLQHHGGPTRLLDVTRNPLIAAWFAVEDGAQRGCDGRLFALATAPAVEAGGGQGDDDPLLKEVLAGKRYPFWSGYNSPQIREETEWGTGTRRRLWVPPAYDARIAAQNAAFLLEGVPMLTRANLKFFTDSAGKPWSAADVAASLSIYARPISPLRKARPNKARLAPLFSFRIAVDAKDEIRQMLTSAYGYTTSLVYPDIQGMSQRLRNRSDWLAPHSQDDLSRSMKHGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UND2</accession>
    <name>A0A0Q8UND2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22100</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46510">
        <property type="protein sequence ID" value="KRC46510"/>
        <property type="gene ID" value="ASE19_22100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1843957at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="17990" checksum="2B69E661F2C8AD37" modified="2016-01-20" version="1">MEDLGPRTLTQIRDLLARHTQVTITPVIDLHHGRSVNGYEHPTDVKQRSEYRTLGDVFPHATTLFGPSKRSPDHDHTVPYDRHGPPGQTGDHNDTPLTRHSHRAKTHLGYEVHQLGPDRWIWRTPHGLHRLVTSEGTSTISPADYCLLSWLRVDLALAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU89</accession>
    <name>A0A0Q8UU89_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17530</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48734">
        <property type="protein sequence ID" value="KRC48734"/>
        <property type="gene ID" value="ASE19_17530"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359446" evidence="2">
        <location>
            <begin position="30"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="144"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="402" mass="42563" checksum="55639834B9A553F2" modified="2016-01-20" version="1">MLRRALARALAASILAMPVLLGPDTPTSAAAPGDCRVANALRTAGQTEAAVQAYLDVLKVTPGAVCAFRGIRSLASAPPADSCKIVRTLADQDARAAAREVLTEHLKKGKDCPGLSLADLADEESLPAQADTWVADWVEKPLKVIATVGGVILLLALLVFLLMLRSEFFARRVRLRLAAQLVVKPFGPPKDGPDVTAAVESQVRELFFLGESLLGADSIYIVDAYQELAPVIDELEKVNASLAPAAAFARALDSLLPRDRWMLTGSFYVPGPGRMACSVSFTDNGRHVAATTFEVPTAGDEPVEADTLALVPCVVGWSQLVAARRREQPTSGATPTAYGWLRGGAAAQERGDHRVAVACYSAAIANDGTDEMARIALALARAVTADPAMAVQILDEMVMRLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUE6</accession>
    <name>A0A0Q8UUE6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17870</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48792">
        <property type="protein sequence ID" value="KRC48792"/>
        <property type="gene ID" value="ASE19_17870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1913104at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="172" mass="18663" checksum="4827B3E973A06207" modified="2016-01-20" version="1">MFGSSVLSSSSIATVRLESLDGQFVELAVSGYQFGSARSTSSGVDWDANWLILRGKVWDGSQSWEFNDPCMTTWEARELAAWLRGLGTALAVAEPGATKLWLTEPNLSFSVVESSQGVTTLDVHFDAESRPALGSNDEGDGLGHRVRLVVPQHDIAQAANHWEQGLAQFPVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUL2</accession>
    <name>A0A0Q8UUL2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_18240</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893259.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48858">
        <property type="protein sequence ID" value="KRC48858"/>
        <property type="gene ID" value="ASE19_18240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1958442at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005561">
        <property type="entry name" value="ANTAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012074">
        <property type="entry name" value="GAF_ANTAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03861">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036625">
        <property type="entry name" value="GAF_ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01012">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50921">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="ANTAR" evidence="3">
        <location>
            <begin position="167"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="240" mass="26270" checksum="E6A15C9F2A21C028" modified="2016-01-20" version="1">MTSEQRLTRVFVELADTLVDEFDALDFLSTLTERSVELLGADAAGVILIDAHDVMHVVASTSDRAQLLELFELQNDEGPCLDCLQTGHAVVNVGAEASRARWPHFTAALAEVGFQSAHAIPLRLRDSVVGAMNLFCVADSRLSEDHVAIGQALADIATIGLLQERAVRQSGLIAEQLQSALDSRVLIEQAKGVVMASSGVDIDRAFQLLRDYSRRHNLAVRETARQVIDRVLTMERLARE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUZ9</accession>
    <name>A0A0Q8UUZ9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Endolytic murein transglycosylase</fullName>
            <ecNumber evidence="7">4.2.2.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Peptidoglycan polymerization terminase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mltG</name>
        <name evidence="9" type="ORF">ASE19_19205</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the transglycosylase MltG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.2.-" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893420.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49018">
        <property type="protein sequence ID" value="KRC49018"/>
        <property type="gene ID" value="ASE19_19205"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008932">
        <property type="term" value="F:lytic endotransglycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08010">
        <property type="entry name" value="MltG_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02065">
        <property type="entry name" value="MltG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003770">
        <property type="entry name" value="MLTG-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30518">
        <property type="entry name" value="PTHR30518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02618">
        <property type="entry name" value="YceG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00247">
        <property type="entry name" value="TIGR00247"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5 7" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="164"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="110"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="132"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="7">
        <location>
            <position position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC49018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="511" mass="54556" checksum="E8C53E452DDE9E63" modified="2016-01-20" version="1">MPSVHVALRDLVTEHGERVLADGHELVAALEQVPAEVATTEQRQALVDAVHLGAFERMIELLQGGAESQAALETAADELVQQRGGDVATAEWALASLAYSVDLTRDDEVPAWTPASPVTPRPALAKEEPAPAQEPEPVHEEVHEDAPLPLSADPVRRPRRRSGCLPILLVILLFAAIVGWFARGAVSDVKDLFAGADDYPGPGSGKVTVVIDPGQSISSMGDELEELDVVASADAFVDAAGSNPAAQGIQAATYTMMLKMKASDAVAYLANPANAGAGDTVTVPEGARVRDIVATIVDKTDFTKRQLTRLLANPASIGLPAEAGGNPEGYLYPATYEITKSTTPKSLLSQMVAKTAAAEKDLGIAAAARKLGLTPHEVITVASILEYEANRGPDYPKVARVIYNRLDDGMRLQLDSTVSYVSKRKGDVWTTAEERASDSLYNTYQHEGLPPGPIGSPGQETIEAALHPANGPWLYFVPDYENSTTVFSTTLAEHNVAVDRLREYCRTHDEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV31</accession>
    <name>A0A0Q8UV31_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HATPase_c domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20230</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895965.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46192">
        <property type="protein sequence ID" value="KRC46192"/>
        <property type="gene ID" value="ASE19_20230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="HATPase_c" evidence="2">
        <location>
            <begin position="303"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="400" mass="42981" checksum="BDBB3EF0C4500745" modified="2016-01-20" version="1">MNDVRRWLPDLLAGLAALVVGLLEIDRYWNAERVVWPVLLVVCVAVAVGLSRAVPGAALAVAWFAGLVQVLLGIDPLLAEALFAVVAFGCARWGRLGTVWLSGLSIPVSAAVAVVWLTPYAFDQALQVLGAERLAADAYRSGPYDWRLTAGLLGIVFLATPWLLGLALRFAARSQASRRSQVAAEAERDQAEEIARLREDQAQLARDVHDVVGHSLAVILAQAESAQYLDDSDPARLKTTLANIATSARTSLDDVRQVLSSTAGQGSGGGRHADLDSLIDGVRASGHEVVATEIGTPRPMPPELEVVAFRVLQEMLTNAIKHGRRDQPVHVERHWADGAGEGDLRMEIRNAVPPDAAPGDGTGQGLDGMRRRVEAVGGRLDVRRRPDSFTVTAWVPVRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV52</accession>
    <name>A0A0Q8UV52_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Kynureninase</fullName>
            <ecNumber evidence="4">3.7.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_19450</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3-hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3-hydroxyanthranilic acid (3-OHAA), respectively.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>3-hydroxy-L-kynurenine + H2O = 3-hydroxyanthranilate + H(+) + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:25143"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:36559"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:58125"/>
            <dbReference type="EC" id="3.7.1.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>H2O + L-kynurenine = anthranilate + H(+) + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:16813"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:57959"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="EC" id="3.7.1.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid degradation; L-kynurenine degradation; L-alanine and anthranilate from L-kynurenine: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Cofactor biosynthesis; NAD(+) biosynthesis; quinolinate from L-kynurenine: step 2/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the kynureninase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.7.1.3" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893466.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49064">
        <property type="protein sequence ID" value="KRC49064"/>
        <property type="gene ID" value="ASE19_19450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1474443at2"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00329"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00334">
        <property type="reaction ID" value="UER00455"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061981">
        <property type="term" value="F:3-hydroxykynureninase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030429">
        <property type="term" value="F:kynureninase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097053">
        <property type="term" value="P:L-kynurenine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006569">
        <property type="term" value="P:tryptophan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010111">
        <property type="entry name" value="Kynureninase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14084">
        <property type="entry name" value="PTHR14084"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038800">
        <property type="entry name" value="KYNU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 4" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_5" evidence="5">
        <location>
            <begin position="112"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR038800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC49064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="402" mass="42398" checksum="67A47D95799385F4" modified="2016-01-20" version="1">MTLDAAALDAADPLASRRDLFVGAATSLVYLDGNSLGRPLQATADRAARFVTEEWGGRLIRGWDERWFEQPLVLGDRLAAVALGAAPGQTAIGDSTTVLLYKLVRGAVAAHPGRTEIVVDRDNFPTDRYVVEGVARECGLTVRWLDVEPDAGVTVEGLAEVVGEQTALVVVSHVAYKSGWMADVAGLTRVAHDAGAWILVDLCHSSGAVPVELDAWEVDLAVGCSYKYLNGGPGAPAFGYVARRHLDADAFHQPVQGWMGAADPFAMGPAYAPAAGIRRLISGTPPILGMLGLADMVDLLEEVGIAAVRAKSVALTSYAVDLVDRDLSDVGLASPRDPAVRGGHVTITHPRMRAVTAALWERDVLPDFRNPDGLRIGLSPLSTSFAEVERGIAAIGAALGND</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV74</accession>
    <name>A0A0Q8UV74_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18395</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893839.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49109">
        <property type="protein sequence ID" value="KRC49109"/>
        <property type="gene ID" value="ASE19_18395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1091610at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="22200" checksum="9D04F6EE6E4CDC14" modified="2016-01-20" version="1">MNYANNGTHALVPSLVPGGCALVAAWESAEAAEAAFAGPLRGAIDGPGRFSMDSELVRVRIDSESERDDWHGWRPSAEGAEPLAEGEPMVAIVHGILRRGRLVEFLRNNVHAASRAAHHPGHRGSIDISSQLPYEHTSISLWKTYGLAQDFAYKKGGHASAMTHALKEKTHRVGVFLQARPLACTGALGIDRPPYPQLPEARRAGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWE0</accession>
    <name>A0A0Q8UWE0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aromatic compound degradation protein PaaI</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20630</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896024.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46253">
        <property type="protein sequence ID" value="KRC46253"/>
        <property type="gene ID" value="ASE19_20630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1814691at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="67"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="155" mass="16316" checksum="F9C51041E7B7A3EB" modified="2016-01-20" version="1">MTESAIQTQAVDPSALDGYEQLHAILDGHLPPAPIAETLGFVGFEVPERGTAIFELDPELRHYNPIGSMHGGVFATLLDSACGCAVHSTLAVGEGYTSLDLTVKFLKAVTVDSGRLRAVGTVLQRGRRTALAEAKLYDGRGALVAYASSSCLILS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXD4</accession>
    <name>A0A0Q8UXD4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peroxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_22190</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the DyP-type peroxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896293.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46525">
        <property type="protein sequence ID" value="KRC46525"/>
        <property type="gene ID" value="ASE19_22190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="837319at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006314">
        <property type="entry name" value="Dyp_peroxidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04261">
        <property type="entry name" value="Dyp_perox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01413">
        <property type="entry name" value="Dyp_perox_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51404">
        <property type="entry name" value="DYP_PEROXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 4" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00025737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="34545" checksum="94C9DE109F2DC804" modified="2016-01-20" version="1">MIEDRGVPTPVPQAVLAPLTESAIFLTFRLTDDTPAAADQVRGLLADLGGLRRSVGFRIPEGDLTCVAGIGADAWDRLFDLPRPAGLHPFRPVAGATHRAPATPGDLLLHIRAHRLDLCFELAQLVTGRLAGAAVVEDEVHGFRSFDQRDLLGFVDGTENPEGDERRDAVLIGGEDPSYVGGSYVITQKYLHDLTAWGELSVEQQELAIGRTKTNDIELPDDRKPSNSHVALTTIVDEHGVERDIVRDNMPFGRVGAGEYGTYFIGYSRDPGVTEQMLQNMFVGRPAGNHDRVLDFSTAVTGTLFFVPTADFLDGAADG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXP5</accession>
    <name>A0A0Q8UXP5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Acetyl-CoA acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_15600</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893513.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50044">
        <property type="protein sequence ID" value="KRC50044"/>
        <property type="gene ID" value="ASE19_15600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="550338at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020610">
        <property type="entry name" value="Thiolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00099">
        <property type="entry name" value="THIOLASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="5">
        <location>
            <begin position="265"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="2">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="343"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="387" mass="40525" checksum="9FC932133729BCBD" modified="2016-01-20" version="1">MGNPVIVEAVRTPLGKRKGWLAGLHPSQTLGFIQAEVLRRAGVDPALVEQVIGGIVTQAGEQSNDAVRRAWLYAGLPMATAGTALDAQCGSGQQSTHLVNDMVAAGTIDVGIACGVEMMSRIPLGANVPAGMGDPRPADWSIDMPNQFEAADRIARNRGITRADLEVLGLASQARAKVAVEEGRFKREIAAIEAPVLDDEGNPTGETRLVDTDQGLRDTTAEGLASLRSVLPDGLHTAGTSSQISDGAAALLIMDEDTARALGLTPRARIKAQCLVGSDPYYHLDGPIDATQRLLDKTGMAISDFDLFEVNEAFASVVLSWAGVHGVDMDKVNVNGGAIALGHPVGATGVRLITTALHELERRDQSTALISMCAGGAMATGTIIERI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZP9</accession>
    <name>A0A0Q8UZP9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CoA-disulfide reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21845</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896411.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46642">
        <property type="protein sequence ID" value="KRC46642"/>
        <property type="gene ID" value="ASE19_21845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1149616at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="3">
        <location>
            <begin position="3"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_dim" evidence="2">
        <location>
            <begin position="339"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="452" mass="46661" checksum="0998669D3B4B5F31" modified="2016-01-20" version="1">MSAAHQALRTAKQAGKAIEVVALEKTEHTSYSACGIPYWVSGEVDSSDELIARGPERHRAMGVDLITGALATGIDASAGTVTYRKDGSEQRIGYDQLVIATGASPIIPDWARRVDGALVGGVAPCKTLVDGEQWVQLLVAAAAAGAGAAPRVVVTGGGYIGVEMAEAARARGLEVTLLTRSAVMSSLDPDMSARVEKDLAEAGVHVAGNAEVVGLEVDDRGWVTSVSSSDGNEHRCDLLVLATGVRPVSDFGPDAGLEVGEWGGFLAAPDGSVAPGIWAAGDCCEVRHRLTGQWTFSPLGTHANKQGRVVGTNVVAPGTRAFNGVLGTAITRYVHGDAHLEISRTGLSTSEAQRAGLEIASMVTEGRTASGYMTEAAPAAVKVFANPATRALLGAQIVGGRAAAKRIDTVAAALWSGATIDHLAEADLAYAPPFATVWEIVQLAARRLADSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0E6</accession>
    <name>A0A0Q8V0E6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MBL fold metallo-hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18115</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893236.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48835">
        <property type="protein sequence ID" value="KRC48835"/>
        <property type="gene ID" value="ASE19_18115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="767622at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12706">
        <property type="entry name" value="Lactamase_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="22"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="262" mass="28271" checksum="2F6E90CCD1CF6DCB" modified="2016-01-20" version="1">MSDTRITHIGGPTALIEVGGWRILTDPTFDPPGRRYFFGWGTTSRKLVGPSIPADQLGPVDAVLVSHHHHGDNLDPSARDLLPTWGTTVTTRKGAAKLGGGAVGLAPWETTTLEAPGKETITITATPCRHGPVGSDPITGPVIGFSLAWAGQEHGELWVTGDTVLYPALREVPSRLRIGTVLLHLGSVRFRYLSGWLRYTMDAREGAELVELVQPAHVVPVHYEGWSHFQQDRGPAEAVLARSPLADRITWLDPGEAVSLPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1R3</accession>
    <name>A0A0Q8V1R3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14930</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896453.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51386">
        <property type="protein sequence ID" value="KRC51386"/>
        <property type="gene ID" value="ASE19_14930"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="173"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="207"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="238"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="262"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="4"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="148"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="312" mass="32563" checksum="94E8D19B57954AC0" modified="2016-01-20" version="1">MTKRGWSLFLAMCLIWGLPYLFIRIAVEHVSPAGLVFLRTALASLVLLPVALARREVAPVLARWRPLALFAFIEIMVPWVLLGHAEQRISSSLAGLLVAAVPLFGALAFLVTAHAERFSTSQAAGLVLGFAGVACLVGLDLDHVDLLAVLEMLGVAVCYAAGPLVLARSFSDVSGLGVMACALSLTTLVYLPFAIADPPTDLPAKAWGSIAVLGLVCTALAFIVFLDLIKEAGPTRSTIITYVNPAVAIVLGVVFLDERVTTGMLVGFPLILVGCVVAAGGRAAEADATVAASTEPAADVLLEIEAEPEPTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2A2</accession>
    <name>A0A0Q8V2A2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15370</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896525.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51460">
        <property type="protein sequence ID" value="KRC51460"/>
        <property type="gene ID" value="ASE19_15370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2001140at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="86" mass="9100" checksum="C571A68181E5859A" modified="2016-01-20" version="1">MSALHTLDVRLFEALAGTCLSAIERDRVVDLCESAVAMAPDLGLPHPGQTVRCGVHLLVADAVPGLDPRVRSDLARLCEVAVVRGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3F0</accession>
    <name>A0A0Q8V3F0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17615</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48749">
        <property type="protein sequence ID" value="KRC48749"/>
        <property type="gene ID" value="ASE19_17615"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2091878at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="92" mass="10174" checksum="E08BD5B39B47F172" modified="2016-01-20" version="1">MAIDPATGRKISPLPFIGLVLVVSSFFLYAASGLLAPAWAVVLLMLTWVAMLVMCFVWWTPYPKRVVVLGVVSWVWWFVAVTAGGVFLDWTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5R6</accession>
    <name>A0A0Q8V5R6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10245</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894722.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52789">
        <property type="protein sequence ID" value="KRC52789"/>
        <property type="gene ID" value="ASE19_10245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="961884at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="20"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="438"/>
            <end position="516"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="535" mass="55735" checksum="D8707C92BD2420E8" modified="2016-01-20" version="1">MPFSDAASAPDVAALVRAAALDLPERLAVVEAGGRGLTWSGLDDEAARVASGLGTTGVVAGHRVMLVLGNRIEFVTSYLGILRAQAVAVPVNPGSTVTELAAMLVDSGARTVVVDADTVEVVRAAVASTEVVAAARDEGRPVPRLVVVGAAAAPTETSYDDLRATDVRPVPPLPDPEKLAVLLYTSGTSGRPRAAMLTHRALLANVEQVATVSPPMIHTDDVVLGVLPLFHVYGLGAVLGGVIRHRAKLVLTDRFDPEGTLDLIEDEACSVVPVAPPVFAAWRHVDALAERLGPVRMILSGSAPLSAEVVEEFTALAEVPVHQGYGLTEAAPVVTSTLLSASAKPGSVGAALEGIDLRLVDDDGHPLAGAEADDAGEIQIRGRNLFSGYWPDGSDGPGDDGWWSTGDVGFLDRDGDLFLVDRVKELVIVSGFNVYPSEVEAVLGEVAGVRQVAVLGTPDERTGEAVVAYVVPADPGAPADELVAAVHATAGERLAAYKRPTRVDVVEALPRTVTGKIRKGMLRGHERRKALGLLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5S9</accession>
    <name>A0A0Q8V5S9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">NADH dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_10040</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="6">Binds 1 [2Fe-2S] cluster.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the complex I 24 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894684.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52750">
        <property type="protein sequence ID" value="KRC52750"/>
        <property type="gene ID" value="ASE19_10040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1206880at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03064">
        <property type="entry name" value="TRX_Fd_NuoE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1590">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002023">
        <property type="entry name" value="NuoE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042128">
        <property type="entry name" value="NuoE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041921">
        <property type="entry name" value="NuoE_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000216">
        <property type="entry name" value="NADH_DH_24kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4 6" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="215"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000216-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="238" mass="25417" checksum="4237B4295788F5E6" modified="2016-01-20" version="1">MSAAPLDDKTLGELREIAARYPEARSGLLPMLHLVQSVQGRITPEGVEACAAILDISPAEVNGVATFYTMYKKHGVGDYHVGVCTNTLCAVMGGDEIFSRLKQHLDIGNDEVAAQRQGDSRTVSLEHIECNAACDYAPVVMVNWEFMDNQTPESAVQVVEALRAGHDVSSTRGPKLCTWREAERVLAGFPDGRVDEGPTAGEASLAGLRIARERGWTAPDPAATPAVEAAQKAEGTDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V603</accession>
    <name>A0A0Q8V603_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09615</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894618.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52680">
        <property type="protein sequence ID" value="KRC52680"/>
        <property type="gene ID" value="ASE19_09615"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1286457at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="126"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="169"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="202"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="270"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="295" mass="30453" checksum="B7F6A3164E8FE054" modified="2016-01-20" version="1">MSTLTTVTSSTVRSTVRSTRAEMMRLRAWPAVWITLGAWLALSLMFGYLFTYLSYTTGDASFTDEGTTQAEQLAQLLPTAVPDVFLQGMPMFGGALMMVLGALVAGNGYGWGTWKTVFSQGVRRGCAVLGAVAALTTFVVATLLVTLVFDLGISLLITVSEGQPVELPSAGSLVEALGAGFLVLEMWALLGFALGTLARGPALSVGLGLVWALVVENLLRGVGQLLSWVDALTEVLPGTAAGSLIGSIVGAGGNGDGTPGVLDTIPGTRAAITVAVYVGAAVALSVVLVRRRDVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6K8</accession>
    <name>A0A0Q8V6K8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">M20_dimer domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16700</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893709.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50240">
        <property type="protein sequence ID" value="KRC50240"/>
        <property type="gene ID" value="ASE19_16700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="906744at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001261">
        <property type="entry name" value="ArgE/DapE_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00758">
        <property type="entry name" value="ARGE_DAPE_CPG2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="2">
        <location>
            <begin position="204"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="443" mass="47518" checksum="C77687BFA3B364EE" modified="2016-01-20" version="1">MAATAHHDVTGDVAAEVVDLCRDLIRIDTSNYGSDEGPGERKAAEHVAGLLDEVGIAAEVVETAPGRANVLARWGGTGASGRQDALLLHGHLDVVPAAAEDWQVDPFSGEVQDGYVWGRGAVDMKDFDAMLLSVVRARQRAGRVPERPVVLCFTADEEAGGHQGAEQLVKHHADWFDGCTEAVGEVGGFSTTVRGRRLYLIEAAEKGMAWMRLTARGRAGHGSMINDDNAVTRLASAVARIGAHEWPVRLTPTMQTLLAAVAELVGTEATPENAPALIDEFGGAARMLGAVLRNSTNPTMLGAGYKVNVIPTEATAHVDGRFLPGFEDEFFATLAELTGEGIEIDYVSNQPPWEMPYDGALVDAMSRSLLAEDPDALVAPYLMSGGTDAKHFTKLGMRSYGFAPLRLPEDLDFTALFHGVDERVPVESLEFGARVMDRFLDQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6R9</accession>
    <name>A0A0Q8V6R9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11820</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53070">
        <property type="protein sequence ID" value="KRC53070"/>
        <property type="gene ID" value="ASE19_11820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1869225at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="371" mass="38902" checksum="2C6B680740521111" modified="2016-01-20" version="1">MRLGLGYAELALLNGEAVDATAQASTHLARAEELGAADLVARGNLVLARCLEATGRLDEAIPRFEAALAEASGTASLVVATALSRCHRTVGDLARAVEVGDRMRERIAAEELGRTDESIQLSMTVVMAHVERGDLDIAARLCAEAVAVAESTGSPVARGSAYWNTSVVHSQRGEVESAIDHAQRALALLGETADARNLARLRLEVGRLHLHLPEPRPEEAVHHVERARTELAGSQASTGEIAHADTVLSGAVLMTGDPERAVLLAEAAVAGASPEAPLEVAEAHLAHGRALAALGDEGAARSAFGRVVALLHEVEQRNRFVAQDWVELAAQFEALGDLPAAVHALRQACLASGLQPSPHGQAVERGARRAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6U5</accession>
    <name>A0A0Q8V6U5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11040</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894865.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52932">
        <property type="protein sequence ID" value="KRC52932"/>
        <property type="gene ID" value="ASE19_11040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="136" mass="14149" checksum="4B341175DEEB1682" modified="2016-01-20" version="1">MPEPTPSQLQVGGGKGLRIAIGVLGALVAVAVVVVGILLVTQRGDDDKSGTTTDDATSSVTEESDGSAAPTLDTPTIDPSDFPSIDPSDFPSINPSDFPDLPGNGTEIPPSELFSGMPTDPSKIEDWFSDYLEQMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6V5</accession>
    <name>A0A0Q8V6V5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Phosphoenolpyruvate carboxykinase [GTP]</fullName>
            <shortName evidence="9">PEP carboxykinase</shortName>
            <shortName evidence="9">PEPCK</shortName>
            <ecNumber evidence="9">4.1.1.32</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">GTP-dependent phosphoenolpyruvate carboxykinase</fullName>
            <shortName evidence="9">GTP-PEPCK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">pckG</name>
        <name evidence="12" type="ORF">ASE19_11720</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>GTP + oxaloacetate = CO2 + GDP + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:10388"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="EC" id="4.1.1.32"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="9">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.32" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894980.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53050">
        <property type="protein sequence ID" value="KRC53050"/>
        <property type="gene ID" value="ASE19_11720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="267285at2"/>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004613">
        <property type="term" value="F:phosphoenolpyruvate carboxykinase (GTP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.449.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.228.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00452">
        <property type="entry name" value="PEPCK_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013035">
        <property type="entry name" value="PEP_carboxykinase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008209">
        <property type="entry name" value="PEP_carboxykinase_GTP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035077">
        <property type="entry name" value="PEP_carboxykinase_GTP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035078">
        <property type="entry name" value="PEP_carboxykinase_GTP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008210">
        <property type="entry name" value="PEP_carboxykinase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11561">
        <property type="entry name" value="PTHR11561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00821">
        <property type="entry name" value="PEPCK_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17297">
        <property type="entry name" value="PEPCK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001348">
        <property type="entry name" value="PEP_carboxykinase_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF68923">
        <property type="entry name" value="SSF68923"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="9" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="6 9" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="12" id="KW-0418">Kinase</keyword>
    <keyword evidence="8 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="7" id="KW-0464">Manganese</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PEPCK_N" evidence="11">
        <location>
            <begin position="20"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="domain" description="PEPCK_GTP" evidence="10">
        <location>
            <begin position="235"/>
            <end position="602"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="209"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="388"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="263"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="261"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="262"/>
            <end position="267"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="390"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="421"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="514"/>
            <end position="517"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17297"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC53050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="607" mass="67372" checksum="2082A4434BE72805" modified="2016-01-20" version="1">MVDVERTLDEAGLTNPHVREYVAHWANITGAERIEVVSAADDARLVQESLDAGELLPAGEGLYYSRSYFKDTARAEERTIVATSNEADKGIYNNWKPAAEMKPKLVELMTGASVGKTMYVIPYLMSPQGSPVEKFAAGVELTDNRNVVLQMIRMARVGVEYINDLGDSFVKAVHVTGDLENLGQGTPDDKRYFVTVADERTILHFGSSYGGNALLGKIAHGLRQGAYDGWKNGFLVEQFMLLGITDKQTGKKYNICGGFPSASGKTNLAMTLAPDALGDRYYVEFYGDDIAWIWVGDDGKLYGMNPENGVFGVAKDTNEKTNPTAIDSIVPGTGAIFTNVAYNTKTQEVWWEGKSDKPTDLDGWEDWKGDVIADRAPENADDPWAHPNSRFTTTLANVPNVAKDFEDPKGVEIHGIIFGGRTRDREPLIRAIRDVAEGVYDGLTLGAEATAAADGLEGVLRYDPMSMRPFMSYSEADYAAHWLEVIGRATTKPIFAHVNWFQRGEDGRFLWPGYRENLRPLNWLMEFLNGEVEGVETPVGVLPKREELNLEGLDEQALADLDTLLSIDIPRWQQEMGFREKHLAQFDGLPEEIWEAHRRVAQALDNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V706</accession>
    <name>A0A0Q8V706_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cytochrome C oxidase assembly protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_17045</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cytochrome ubiquinol oxidase subunit 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893770.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50301">
        <property type="protein sequence ID" value="KRC50301"/>
        <property type="gene ID" value="ASE19_17045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="761975at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003317">
        <property type="entry name" value="Cyt-d_oxidase_su2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43141">
        <property type="entry name" value="PTHR43141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02322">
        <property type="entry name" value="Cyt_bd_oxida_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000267">
        <property type="entry name" value="Cyt_oxidse_sub2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00203">
        <property type="entry name" value="cydB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="82"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="119"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="160"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="194"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="219"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="248"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="297"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC50301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="340" mass="36706" checksum="DAAF4C7AD3D2559E" modified="2016-01-20" version="1">MELTTVWFVLIAVLWIGYFTLEGFDFGVGLLLPVLARDNTERRVMINTIGPVWDGNEVWLLVAGGATFAAFPEWYATLFSGFYLPLLMILVALIVRGLAFEYRAKRPDAAWRARWDRVIFFGSLVPSVLWGVAFANILRGVPIDSDLEYAGGFLDLLNPYALLGGLTTLALFVTHGALFIALKTDGEIRHRARRLAVPAVAVSAVLAVAFLGWTQQQTGTTGSAIAFVLAAAALVSAGAAARAGREGWAFLGTFVTIALAVAGLFLALFPDVMPSTLADGASLTTTNAAATSYTLRIMTVTAVVFTPLVLAYQGWTYWVFRKRISTHHIPSAPVETAGTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V709</accession>
    <name>A0A0Q8V709_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12355</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895091.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53164">
        <property type="protein sequence ID" value="KRC53164"/>
        <property type="gene ID" value="ASE19_12355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359759" evidence="2">
        <location>
            <begin position="28"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="214" mass="22345" checksum="FE32257A2EDC2ED5" modified="2016-01-20" version="1">MPTLQVCPLAARLAASLVLLTSLTACQDESTGPTSQPTVPAPTGSPTPDRRDTTTIEVTEPGARLEIGEEAVLPLFDGRRGTALARVAVTGIEPGTTAELLAAGVRNASAHALFYIRLDIELLSTGDEPFSSYSPLSNFVGLVGPFQANSLLAVGESSPCDIDAEFGIDAQHGDTLSGCIPVYVNSGTEVDGVRFTLEGDAGYDLQDGEPVLWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V763</accession>
    <name>A0A0Q8V763_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CHAT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895675.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53212">
        <property type="protein sequence ID" value="KRC53212"/>
        <property type="gene ID" value="ASE19_12675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1245649at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024983">
        <property type="entry name" value="CHAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12770">
        <property type="entry name" value="CHAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CHAT" evidence="1">
        <location>
            <begin position="596"/>
            <end position="828"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="843" mass="89322" checksum="FEED8E7FDC82CD6C" modified="2016-01-20" version="1">MQDLLDLALDDPTAAKRQAEELLASTTDDRTLSFAGQCLGIVLRDAGQPDAALTVLRRALRNARRTADTDRERDVAATLGTTLVVAGRSQQALRVLERALEGATGELAAKVGMRLAAVQSMVGQRSAAVPVLNRVLGEMQAVGNRAWEARTRLWLGYVELDLGRVDEAEFHVLEAMRILEDSGASADRVSILSNLAEIALARGDHADALRRFAVTLEAHVEADRPVGPEVVARYGEAYLAAGLAADAVRLMEAFGEEMAPLEKAEFLASLADARLAAGDPSGAVRAADESVRLFRRQQRPWFEVRARLTRVRAREAMGQVGRLAAEARAVADVLHGERAHEAPVALTVAGRLGRGQEQERSWNEAASYRTHPNPLVRAAAWHAQSLAHEEQRNRGGVLRAAAAGLDAIDEHRRLIGSSELRALATTHGRDLTTIALRHAATEPRTLLRWSERTRATALAQPPATSDAATIPASLAALRDNGRRLAEARQEGEPTDTLERERLRLERAVRAESHTLSATTAEQQKPPSVEEIVAEVGDGCLVELVDVDGTLHVLVVHAGKVRRQVAGATEEIAALLGPAAMLLRRASRGRAIDSSALGTQLQQAILGDAARLLPDGPVTLAPTARLHGLAWALLPVLGDRPFSVVPSAGQWLRARATPRPRSRQTLLISGPGLATGGAEVPLLASSHPDATLLAGPDATLDNVLGQLDGADLVHLAAHGHFRADSPLFSALDLADGPLTVHDLERVRRAPYRVVLSACESGVLAPVGAEELLGLAAALFSLGTAGLVSSVAEVNDAATADLMVELHAALARGDDPATALHEVRRSTAGDPVAAGTAAAFLALGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V775</accession>
    <name>A0A0Q8V775_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11685</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894974.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53044">
        <property type="protein sequence ID" value="KRC53044"/>
        <property type="gene ID" value="ASE19_11685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1862045at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019099">
        <property type="entry name" value="Uncharacterised_PGPGW_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09656">
        <property type="entry name" value="PGPGW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="74"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="113"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="148"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="170" mass="18484" checksum="01A30136E58114E5" modified="2016-01-20" version="1">MTGAAKRLLLEIVGWTLLLAGIAAMVLPGPGLLLMAAGLAVLSQQYTWAERLLDPVLLRALRAAAEGVETWPRIVGSTIGALALGGFGALWIVKPDVPSWWPVADKWWLVGGPWTGVTLILSSLIALGLLVYSYRRFHGKPEARAALESKIDEADDDAHEQRNRMRHKEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7M5</accession>
    <name>A0A0Q8V7M5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12395</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895099.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53172">
        <property type="protein sequence ID" value="KRC53172"/>
        <property type="gene ID" value="ASE19_12395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1450979at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="408" mass="46177" checksum="E238A6B27DE4BF91" modified="2016-01-20" version="1">MSKRILLHVGTPKTGTSYLQDVLFQNRSRLLRQGILYPADRFDAHFLAALDLMRLRWGGLERQAVGAWDRLAQQVRDHDGTAIISHEILATASRTQVQRALKSLGHEPGGGGAEVHVIVSVRDLARQIPAEWQENVKHRASFRYGRFLNLIRDPERSHRVGAWFWGAQEIPDILARWGATIPPERIHIVTVPRPGGPREELWRRFSEAFGLDDLGLDLGTERANPSLGVPESSLLRRINKAAARDISPAHYRPLVRELLAHQVLSKRTQSPRLSLPPSDYPWVAELTESWIAELTERGYDVVGDLADLRGDEPVAQGWADPDKPVERQVNMAALDAIRALLLESAERQAEADRLRSKLEDARRELIRARTPRLMRTMEWTVRRLEGSDRGRQALGAYRKVRGRNSLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8G0</accession>
    <name>A0A0Q8V8G0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14640</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896940.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53562">
        <property type="protein sequence ID" value="KRC53562"/>
        <property type="gene ID" value="ASE19_14640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1714060at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022121">
        <property type="entry name" value="Peptidase_M73_camelysin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12389">
        <property type="entry name" value="Peptidase_M73"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359793" evidence="1">
        <location>
            <begin position="39"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="176" mass="17766" checksum="3CAA1D59BFD406BB" modified="2016-01-20" version="1">MRMSRKILVPLATLSAAAAVAVGSGATFTSTSGNTISAATSGTLTQLNSKDGGAIFDLTNMKPGDTLNGALNLTNTGSLPATFSLTETGSTNGFTADNLSLAITNTTTGATVYSGTFGGLVDGTKTDLGVIQPGVLNNFKFTVKLAQTAPNADQGKSATATYTWDSVQLNGTTTNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8H0</accession>
    <name>A0A0Q8V8H0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13845</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897080.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53423">
        <property type="protein sequence ID" value="KRC53423"/>
        <property type="gene ID" value="ASE19_13845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047542at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="9"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="215" mass="22152" checksum="6074EA052A6FBEC0" modified="2016-01-20" version="1">MGHDHCVATPTREKLLDACLRVVVDQGIAKASARAIATEAGVNQALVFYHFGSVDELLAAACDHGARQRIEAHRAALAEVTDFSGLIAVARAIHAHEQDAGNVALLGQLLAGSSSHASLGPATAAGLALWATEVQVVLERLLGSGPLAGLVDVPGLARAVSASFVGLELYDGVDPEGAASAFAAFEQLARLLGVVDGLGPVERAALRRRLRRSTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8R1</accession>
    <name>A0A0Q8V8R1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14295</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897000.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53503">
        <property type="protein sequence ID" value="KRC53503"/>
        <property type="gene ID" value="ASE19_14295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1859412at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037079">
        <property type="entry name" value="AF2212/PG0164-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015018">
        <property type="entry name" value="DUF1905"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08922">
        <property type="entry name" value="DUF1905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="99" mass="10933" checksum="6083689EC3EF560D" modified="2016-01-20" version="1">MDFAFTGPVVEWRGPAPYWFLAVPLEDSEDIKEAARGLEYWGQVAVEVRIGATEFTTALFPKDGRYLVPLKAAVRRAAGLDPVEAGQELAVELRLAARK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8V3</accession>
    <name>A0A0Q8V8V3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10635</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895174.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53622">
        <property type="protein sequence ID" value="KRC53622"/>
        <property type="gene ID" value="ASE19_10635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="520970at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0349">Heme</keyword>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="432" mass="48363" checksum="57FE571AD8F6AA41" modified="2016-01-20" version="1">MDALPPGPRWPALLQTVALMRFRHQFHPWLHRRYGDAYTVNLVPGGRPLVLFTRPEVTKEIFAADPEVFHAGKGNAVLGPIMGEHSLLLQDSVEHHRARKLLMPAFLGHALRGYRGMVAEVAASEVDGWTEGESFRALERMNDLTLEVILRVVFGVTDQTRLAKLRPAVNQTVEINPAILLGWAYPRLQKLGPWRRTIENQVDLDRLMYAEIRERREATDLADRTDVLSRLLAAHDPEDPQSGLDDTELRDQLVTLLLAGHETTASALSWALVEVGRSPDLLARTQRAADEGDDAWLEAVLKESMRLHPIIPMVVRTLMKPSTVGGWDLPAGTTVGPSIIMSHQQESNFADPEVFRPERFLGDDVPPLNVWIPFGGGVRRCIGAGFSLMEGVEVLREVFGRYDVEAVGTDVPKVRNITSVPRRGARIRVRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8W0</accession>
    <name>A0A0Q8V8W0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PpiC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_06735</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53790">
        <property type="protein sequence ID" value="KRC53790"/>
        <property type="gene ID" value="ASE19_06735"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000297">
        <property type="entry name" value="PPIase_PpiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13145">
        <property type="entry name" value="Rotamase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50198">
        <property type="entry name" value="PPIC_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="PpiC" evidence="3">
        <location>
            <begin position="188"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="307"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="320"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="335" mass="36241" checksum="DB774F5A95DAC514" modified="2016-01-20" version="1">MLALAVGAAAAVWVVRADDLPDDAAFRYKDQVVTKGELDDRLQVLEALYGVQRPENSKAEDEFNRDAAKSMVVSLLLADEAAERDIVVSDKEAQTELDKLIDQQLTGGRDAFVDFLSTSGIAERDVLDEIRAQLATSRLVDDVTSDVPRATEADARQTYDEHRDEMVTPEGRDIVNVVVATRSDADRVQRLAAAGGELGPLVRTWSLDGSTRDTGGKLGVVTEAQLESDYAKVAFAAKKGDVFGPVKTASGWNVGQVVDIVPSRPVTFKDVVDEIRERLTAEDKLTTWRKFLEDVLARGDVEYAAAFMPDDPTAPPAEATSVPSDGSSSEVPSSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9J5</accession>
    <name>A0A0Q8V9J5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08035</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54014">
        <property type="protein sequence ID" value="KRC54014"/>
        <property type="gene ID" value="ASE19_08035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1590640at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046237">
        <property type="entry name" value="DUF6270"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19786">
        <property type="entry name" value="DUF6270"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="245" mass="27010" checksum="98F87627ACDDD75E" modified="2016-01-20" version="1">MKVGILGSCVSRDAFGLHEDALGKPAAYFARSALASVMSPTPFTGVDLSAISSPFQRSVVAMDLEKAFVPWLETADVDLLVVDCIEERFALVVAPDGGTATRSSEFVSAGADISHCELVRPNTPDALARWTAAWARFVAAVDAAGIRERVRINRVRWATEFDGPGAEFPAFYNPQRIRRSNEFLESVHARMEQDLEPEQFWRYDDAELLAASQHQWGPAPFHYTPAFYRRFVQHVTGGPAGGPRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Z1</accession>
    <name>A0A0Q8V9Z1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Aspartate 1-decarboxylase</fullName>
            <ecNumber evidence="9">4.1.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Aspartate alpha-decarboxylase</fullName>
        </alternativeName>
        <component>
            <recommendedName>
                <fullName evidence="9">Aspartate 1-decarboxylase beta chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="9">Aspartate 1-decarboxylase alpha chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name evidence="9" type="primary">panD</name>
        <name evidence="14" type="ORF">ASE19_07995</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>H(+) + L-aspartate = beta-alanine + CO2</text>
            <dbReference type="Rhea" id="RHEA:19497"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:57966"/>
            <dbReference type="EC" id="4.1.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9 10">
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </cofactor>
        <text evidence="9 10">Binds 1 pyruvoyl group covalently per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="9">Cofactor biosynthesis; (R)-pantothenate biosynthesis; beta-alanine from L-aspartate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Heterooctamer of four alpha and four beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="9 12">Is synthesized initially as an inactive proenzyme, which is activated by self-cleavage at a specific serine bond to produce a beta-subunit with a hydroxyl group at its C-terminus and an alpha-subunit with a pyruvoyl group at its N-terminus.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the PanD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.11" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895440.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54008">
        <property type="protein sequence ID" value="KRC54008"/>
        <property type="gene ID" value="ASE19_07995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1751990at2"/>
    <dbReference type="UniPathway" id="UPA00028">
        <property type="reaction ID" value="UER00002"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004068">
        <property type="term" value="F:aspartate 1-decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006523">
        <property type="term" value="P:alanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06919">
        <property type="entry name" value="Asp_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00446">
        <property type="entry name" value="PanD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003190">
        <property type="entry name" value="Asp_decarbox"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21012">
        <property type="entry name" value="PTHR21012"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02261">
        <property type="entry name" value="Asp_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006246">
        <property type="entry name" value="Asp_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00223">
        <property type="entry name" value="panD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="1 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 9" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="6 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 9" id="KW-0566">Pantothenate biosynthesis</keyword>
    <keyword evidence="8 9 10" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9 10" id="KW-0704">Schiff base</keyword>
    <keyword evidence="5 9" id="KW-0865">Zymogen</keyword>
    <feature type="chain" id="PRO_5014000935" description="Aspartate 1-decarboxylase beta chain" evidence="9 13">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5014000934" description="Aspartate 1-decarboxylase alpha chain" evidence="9 13">
        <location>
            <begin position="25"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9 11">
        <location>
            <begin position="73"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate; via pyruvic acid" evidence="9 10">
        <location>
            <position position="25"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="9 10">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9 11">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="modified residue" description="Pyruvic acid (Ser)" evidence="9 12">
        <location>
            <position position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR006246-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR006246-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR006246-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR006246-5"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC54008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="139" mass="14853" checksum="226D85D9FACED223" modified="2016-01-20" version="1">MLRTMMKSKIHRATVTQADLHYVGSVTVDEDLLEAADLLAGELVHIVDITNGARLETYTIAGERGSGVIGINGAAARLVHPGDLVILIGYGQMTTEEAKEYQPHVVFVDADNKIMATGFDPAETFGDPTLSRGDVTAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA18</accession>
    <name>A0A0Q8VA18_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Diacylglycerol O-acyltransferase</fullName>
            <ecNumber evidence="5 11">2.3.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">ASE19_08500</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>a 1,2-diacyl-sn-glycerol + an acyl-CoA = a triacyl-sn-glycerol + CoA</text>
            <dbReference type="Rhea" id="RHEA:10868"/>
            <dbReference type="ChEBI" id="CHEBI:17815"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="ChEBI" id="CHEBI:64615"/>
            <dbReference type="EC" id="2.3.1.20"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Glycerolipid metabolism; triacylglycerol biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the long-chain O-acyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.20" evidence="5 11"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895522.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54090">
        <property type="protein sequence ID" value="KRC54090"/>
        <property type="gene ID" value="ASE19_08500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="279287at2"/>
    <dbReference type="UniPathway" id="UPA00159">
        <property type="reaction ID" value="UER00277"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00282"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004144">
        <property type="term" value="F:diacylglycerol O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019432">
        <property type="term" value="P:triglyceride biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014292">
        <property type="entry name" value="Acyl_transf_WS/DGAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045034">
        <property type="entry name" value="O-acyltransferase_WSD1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009721">
        <property type="entry name" value="O-acyltransferase_WSD1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004255">
        <property type="entry name" value="O-acyltransferase_WSD1_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31650">
        <property type="entry name" value="PTHR31650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03007">
        <property type="entry name" value="WES_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06974">
        <property type="entry name" value="WS_DGAT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02946">
        <property type="entry name" value="acyl_WS_DGAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8 11" id="KW-0319">Glycerol metabolism</keyword>
    <keyword evidence="6 11" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="9 11" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="WES_acyltransf" evidence="13">
        <location>
            <begin position="8"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="WS_DGAT_C" evidence="14">
        <location>
            <begin position="301"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="157"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU361241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF03007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF06974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC54090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="452" mass="49081" checksum="67FA43FE681AAE53" modified="2016-01-20" version="1">MSNIALGDAMFLLGEAAGRPAQVITLQLFRPPDEADPAQWVGDYFQQLLASDDLKPVFRRRPARSLLSPSTLRWVDDEPVEIDHHVRRSALPGQGRVRELLEAVSVQHGVQLDRRRPLWEYHVFEGLEGGRFATAFKTHHAIADGMSLARHVLGSLSADPGERSLRPPWAADPDHRRRSRAARHGAGLSLAPVLRSASTVRSLVDMARDDSARIPFEAPPSPLNVKVGGARRFAGDQWPLERLKAVARATASTVNDVGLAMAGGALRAYLEELGSLPDRSLVAMVPVSVRRAGESFADGEGNAFGAMLCDLGTAGDDPVARLESIRDQTRAAKERYARMSAAEVLAVSKLIMGGVIISSLTGVTALPRHAFNLIISNVPAPDQPLYCNGARMTDIYPVSMISEAQAMNITLTRYDNQMTFGIVGDRRALPHLQRMLIHLDEALTALEKAVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAE7</accession>
    <name>A0A0Q8VAE7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08015</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54204">
        <property type="protein sequence ID" value="KRC54204"/>
        <property type="gene ID" value="ASE19_08015"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021517">
        <property type="entry name" value="DUF3180"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11377">
        <property type="entry name" value="DUF3180"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="109"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="14917" checksum="5983085CA37F2509" modified="2016-01-20" version="1">MTLLGWAVVGVVGGWGFHPVADRLGFVPPLVSVGQPLALLLLGAILGYVAWITHRAVHVRHERLEAHQAVNRLVLARASALVAALVSGGYAGYAISWIGDAAEQADQRITGSLAAVGCGVVALVAALLLERACRVRDDEGADH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAR4</accession>
    <name>A0A0Q8VAR4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08980</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895662.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54230">
        <property type="protein sequence ID" value="KRC54230"/>
        <property type="gene ID" value="ASE19_08980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="217"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="246" mass="26558" checksum="2236F39C47336F08" modified="2016-01-20" version="1">MIQLLGRVLRSAVREPRGYWGDVRDQMYDTLRLCWVPMMFSCFCFGFGAPGLQAGNLYILFGIPERLGSFFVMASVREFAPWINAMVVAGVMGTAITADLGARRIREEIDAMEVLGLDPVRVLILPRVIAVTIMTGLMDLIALVFGVLGGYVAALQLGASSSAFNANFFANATTTDVWASVVKTTLFGLIISVVCCYKGFTASGGPAGVGRAVNQAVVIAFAAIWSFNFVFTTILLGLAPEIQVYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBK7</accession>
    <name>A0A0Q8VBK7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Channel transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_12835</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the MIP/aquaporin (TC 1.A.8) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895703.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53241">
        <property type="protein sequence ID" value="KRC53241"/>
        <property type="gene ID" value="ASE19_12835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1744995at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015267">
        <property type="term" value="F:channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1080.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023271">
        <property type="entry name" value="Aquaporin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034294">
        <property type="entry name" value="Aquaporin_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000425">
        <property type="entry name" value="MIP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45665">
        <property type="entry name" value="PTHR45665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00230">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00783">
        <property type="entry name" value="MINTRINSICP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81338">
        <property type="entry name" value="SSF81338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="78"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="121"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="148"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="184"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="222" mass="22343" checksum="22ADF7ABF309A7CB" modified="2016-01-20" version="1">MLARRAVAELLGTAFLVATVIGSGIAAQRLSPGDTGLQLLENSLATGAALVALIIAFQPVSASFNPVVTLVEAGLGRVGWPAAGALVGAQVVGGALGAVVANLMFELPAVELSEHARTGSGLMVGEVVATFGLVLVVFGALRSDRVETVAYAVGGYIAAAYWFTSSTSFANPAVTVARMLSDTFAGIAPASVPAFVLMQLVGGGLALLAVRFLHPAPSPQEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBL2</accession>
    <name>A0A0Q8VBL2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">RecBCD enzyme subunit RecC</fullName>
            <ecNumber evidence="6">3.1.11.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Exonuclease V subunit RecC</fullName>
            <shortName evidence="6">ExoV subunit RecC</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Helicase/nuclease RecBCD subunit RecC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">recC</name>
        <name evidence="8" type="ORF">ASE19_11670</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild-type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>Exonucleolytic cleavage (in the presence of ATP) in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides.</text>
            <dbReference type="EC" id="3.1.11.5"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6">Heterotrimer of RecB, RecC and RecD. All subunits contribute to DNA-binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the RecC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.5" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894973.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53043">
        <property type="protein sequence ID" value="KRC53043"/>
        <property type="gene ID" value="ASE19_11670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1320159at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009338">
        <property type="term" value="C:exodeoxyribonuclease V complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008854">
        <property type="term" value="F:exodeoxyribonuclease V activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01486">
        <property type="entry name" value="RecC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013986">
        <property type="entry name" value="DExx_box_DNA_helicase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006697">
        <property type="entry name" value="RecC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041500">
        <property type="entry name" value="RecC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17946">
        <property type="entry name" value="RecC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000980">
        <property type="entry name" value="RecC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01450">
        <property type="entry name" value="recC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="6" id="KW-0347">Helicase</keyword>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RecC_C" evidence="7">
        <location>
            <begin position="821"/>
            <end position="1050"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1127" mass="121412" checksum="FD0AA6C363A549DC" modified="2016-01-20" version="1">MTLHLHRAARTDVLADELGALLATPPDDPFASEVVVVPARGVERWLTQRLSHHLGTGPRGGDGVCAGVDFLQPASLVGLLLDRSADDPWHPDRLVWPLLATIDASLGEPWCATLATHLGHGQPGDEGELRRSRRWSVARRLAELFSSYAVQRPALVTDWREGRDTDGCGAPLADDLLWEAELWRRLLARMAAAGHDEAPDQRHLRVCRALREGELAGLDLPDRLSLFGHTRLPQTEIDLLAALGVHRDVHLWLAQPSAALWDAVSAAGAEVRPRSEADAEVAAHPLLASLGRDARELATVLGARIAAGEAVDAGAAPDPDAPDTLLGWLQGDLRANAAPSATVRAGRVLGPRDRSVQVHACHGAARQVDVLREVLVGLLEDDPTLEPRDILVMCPDIETFAPLVSAGFGLGELIADDGSDDTLHPAHRLRVRLADRATSSTNPLLSVAVALVELAGGRATASQVIDLLSRPVCRRRFGFADDDLARITRWVAEAGVRWGIDGTQRAAYAMDAFPHNTWSAGLDRLLLGVAMSGDEHRNLGRGLPVDDIASGEIELVGRLSEAVTRLGDCLAALDTAQAAGDWFEAVADGVRDLCEVDADDAWQLPQFERELARARASAEQSAPEVPLRLADVRALLQARLAGRPTRANFRTGMLTVSTMVPMRSVPHRVVCLVGLDDGVFPRTSGIDGDDVLARGPLVGERDRRGEDRQLLLDAVLAAGERLVITYTGATEHTGAERPPAVPLGELVDALDRTASGPVRDSVVVRHPLQSYDVRNHRAGDLGTDGPFSFDRASLAGARASVRERTPVPAFLDGGLPPAPRRDVTLAELVAFVHKPARTFLRTRLDVATPFEPDQVADAIPVTLNGLEVWQIGDRLLRAVLAADDPGATAQAVMTAEQLRGSLPPFDLGRGQLEKVVRECQDLFTRSAALRTGTPRTIDVDVDLGGGRRLTGTVPRVHGNQVVSLSYSRLKPKQRLASWLDVLALSAAHPDESWTGHAVARAKAGPQRSLVGPLDHRAHDWLRSIVDLYDAGLARPLPMPLDTAHAWADARAKELHGMDIDPAEAAAKAWTTDPYNDWGIKGEDDEPAHRRIWGPDAPVDVLLDAGLPELAWQLWEPLLTGAEKVASL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBQ1</accession>
    <name>A0A0Q8VBQ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11930</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895021.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53091">
        <property type="protein sequence ID" value="KRC53091"/>
        <property type="gene ID" value="ASE19_11930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1719670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010419">
        <property type="entry name" value="CO_DH_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06240">
        <property type="entry name" value="COXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="208" mass="22580" checksum="85C81A7BF2D458B7" modified="2016-01-20" version="1">MATRKADWGKRTANKKTPGTTVDLEDRVEVPAAVDQVWTRLEDVPLVASCLPGLDPATLVAESSSVYRAKMVNTVMGISANWDLRATIEPDPRSRRLKVLLDGTDSRLNMKMHGVASVDVTQGTVPSQAVLDYTAHLRIDGSLAAMGGPVVRSIMADALNQFVAVVGGIEPAPTTLWARVKGFLRALRDKIFRREVASSPSQPRKDHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBU2</accession>
    <name>A0A0Q8VBU2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894347.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54734">
        <property type="protein sequence ID" value="KRC54734"/>
        <property type="gene ID" value="ASE19_04435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1616572at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008030">
        <property type="entry name" value="NmrA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05368">
        <property type="entry name" value="NmrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NmrA" evidence="1">
        <location>
            <begin position="5"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="285" mass="29336" checksum="67931A9F9B207D08" modified="2016-01-20" version="1">MTYVIHGATGAQGGPVVAALTAVGKPVVALTRRQDAVVNGARVRAVDASSVEQLAEAYRGADGVFVHLPMASEADREAFARSVVAALGEVRPARVVFSTSGSVVVPEGGAGQSTSAGVSTLINGLEETGLDHVVVAPRLFLENLLMPPVVASARERGSLPYPLRADFPVSWASHLDVADVVAELFARREVPGVVEVGHDPAILGADLAGAFGTRLGHDVAYQALTPAAFGEIIKPLLGPASTGVVGLYEYLGSLAHAAIAPGRSAQSLLGIMPRSVQQWLADVSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC70</accession>
    <name>A0A0Q8VC70_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Amine oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04250</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894381.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54699">
        <property type="protein sequence ID" value="KRC54699"/>
        <property type="gene ID" value="ASE19_04250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1442136at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001613">
        <property type="entry name" value="Flavin_amine_oxidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00757">
        <property type="entry name" value="AMINEOXDASEF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="3">
        <location>
            <begin position="13"/>
            <end position="446"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="450" mass="48601" checksum="1AE1F52437A39281" modified="2016-01-20" version="1">MSEVDVVVVGAGLAGLSAARRLVAAGKSVVVLEARDRVAGRNMGGRLSNGTEVELGGQWIGESQDVAKSLIAELGLELFDTYDSGDSALYVDGELQRFNTEGVWGLPPESAAEINRLFTLIEELAQTVSIDAAWDTPDAAALDRQTFDAWVRQNTDDALARRYVAMMIPAVFSAESPELSLLHFLFYVKSGTSWTVLISTTGGAQEQRVRGGTHLISERMAEDLGDRVRLNSVVRTIRQDDTGVTVEHETGSVTAQHAIVAVPQTLAGRMRYVPALPVGRDALTQQMPAGSVIKFQVGYDTPFWREDGLNGQVQSLDHAFNVVFDNSPEDASCGVIVGFIEGDFARRAEQLDADGRRDLVLTALVDYFGPKAAEPFDIIEQDWNAEEFTRGCYGGRLAAGAWTAYGHALAAPVGRIHWAGAETATVWNGYMDGAISSGQRAAEEILAYNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC80</accession>
    <name>A0A0Q8VC80_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LLM class F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05255</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894212.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54869">
        <property type="protein sequence ID" value="KRC54869"/>
        <property type="gene ID" value="ASE19_05255"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022378">
        <property type="entry name" value="F420_OxRdatse_MSMEG2249_pred"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03857">
        <property type="entry name" value="F420_MSMEG_2249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="14"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="358" mass="38342" checksum="859D37799B71ABA6" modified="2016-01-20" version="1">MFPEIGCYGLAGHTSSPRDLLDEARLAEDLGIGALFLSERFNVKDAGVLAGAAAAATERLGIATAATNHNTRHPLVTATMATTLHRLSGGRYALGLGRGFDLLFDVMGLPRVTGAQMADAISIYRRLWHGEAFGHSGPAGEYPYLSQDRDFDEDIPVLMMAIGDNSLRLAGRVADGVVLHTFLSDETLARSVATIRRAAEDAGRDPASVRVWSVLATVDDAIAEEARLRKLVGRLATYLQGYGEVLVRANGWSLDDLTRFREHPLVQGYPGAFDAIGTVDELTRLREEVLPAAWLAASATGSAEQCARRVRDQLDAGADSVVLHGATPAELAGVVRAWAQVRDPALDALPANPGRVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC84</accession>
    <name>A0A0Q8VC84_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04390</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CdaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894355.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54726">
        <property type="protein sequence ID" value="KRC54726"/>
        <property type="gene ID" value="ASE19_04390"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041522">
        <property type="entry name" value="CdaR_GGDEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17853">
        <property type="entry name" value="GGDEF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF_2" evidence="3">
        <location>
            <begin position="175"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_30" evidence="2">
        <location>
            <begin position="341"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="402" mass="44101" checksum="81CE5009E7D124A4" modified="2016-01-20" version="1">MSADGRLLVERLLRRRRNLADLIVADVKSDVLDYGSLGALTVSGDVMETALLTVTDLLESLLDEDPEGSRHLENIQRSASRRVHQDVSLTSLLQSYRIWGARIWQAVLDEAGDDPVMREAALGLVSRIFSYVDRVSITLAQVYAEESAGAYRARDVLRSDLLESLLLGQVLSDRARVEIARLNPTSDSKLAVAVIKPGETPPEQARSETIKILQACRQNMTPQAKVLLGVRDGDVICLVRIGNAAELQRLHATAHKIAEENPQWRVSVGRPHDGVAGIQRSFREAQEAAAVAASLRPRGGAILFSEVILDRILVRSDYAEDLLEEALGPLLAYDAEHEADLVNTLRSYVANDMNMTRTAKDLMVNPNTVAYRIKRVGQLTGQDPTTSAGIVTLAVALRLMES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCC4</accession>
    <name>A0A0Q8VCC4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04900</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894273.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54808">
        <property type="protein sequence ID" value="KRC54808"/>
        <property type="gene ID" value="ASE19_04900"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="15"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="22143" checksum="9D4394702B4ECA7C" modified="2016-01-20" version="1">MTSVRRSGTKGVARADREEQILEAAGRVFGAQGFAATSVADVARAAGISKPLIYNYFGSKEGLFERCLRVASELLVGEIERSAQLGAVGLQRALVTLDGVFHVLDDRPWAWAVANDPTAPDVDGLGDLIGAYRRRLEELAREGVGELLTIAGDDDQLDLDAMTSVWSSVFASLVTWWCAHPDVSPEAMSERCERLFGAVFGVGLDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCI5</accession>
    <name>A0A0Q8VCI5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">FHA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_05825</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894110.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54965">
        <property type="protein sequence ID" value="KRC54965"/>
        <property type="gene ID" value="ASE19_05825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1523177at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FHA" evidence="3">
        <location>
            <begin position="475"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="154"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="287"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="329"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="567" mass="57926" checksum="974407D8162916CB" modified="2016-01-20" version="1">MTYEGSYRPGSWAGATTPNGWLLADLAVTDERVAAAWGRLRAGAGVDDVLDTLLGQGLATLPGFALVVHGPEALRVVVRRDAVVTVRVGNEERVVEAGGGSWTDIELPVPVDHIQLRHQAASSDETTTGVPVGLGIAQASRIDLFAIETSDGVVTAPPAPEVPDVVDTPGVPDVAEDPELLEEPDPAPVEVPDEAPADVPEPEPSGAPDYSDLFAGTQDRDAFLARLARDAEEDESEDDPADPGSATLAALLEAPGTTDDVREPSVATVAPPSGTTAIWTGDLPELDQRLPPPPASPPSAGAPPAPPASSTSGLIDGLPWLTGGSVDVPSAPPVPPPPVGPPPSSPPPSAPPPVGPPPTASLPVSAPPSASVPPPPPPSTPPPAPPAAPAAADDESAALTMSRAELLAAMGDHGVVGPSVLAVRCPAGHPTPPEQDRCRVCGATVEAAHPTEVPRPTLGLLRSEAGETVQLDRDVVFGRSPQASASRAASQPNLVKIADPGISRNHLHVALDGWQVLVRDLGSSNGTEIQLPGGEVEKLRSGEDYLIEAGTVLTLAGDVRYTFEVTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCX1</accession>
    <name>A0A0Q8VCX1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">30S ribosomal protein S11</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpsK</name>
        <name evidence="10" type="ORF">ASE19_06440</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to IF-3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the universal ribosomal protein uS11 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894475.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55066">
        <property type="protein sequence ID" value="KRC55066"/>
        <property type="gene ID" value="ASE19_06440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1713391at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01310">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001971">
        <property type="entry name" value="Ribosomal_S11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019981">
        <property type="entry name" value="Ribosomal_S11_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018102">
        <property type="entry name" value="Ribosomal_S11_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036967">
        <property type="entry name" value="Ribosomal_S11_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11759">
        <property type="entry name" value="PTHR11759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00411">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002131">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03632">
        <property type="entry name" value="uS11_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00054">
        <property type="entry name" value="RIBOSOMAL_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0699">rRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC55066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="133" mass="14102" checksum="167C802A263D3B7D" modified="2016-01-20" version="1">MPPKARAAAKKVRRKEKKNVAQGEAHIKSTFNNTIVTITDPTGAVISWASAGTVGFKGSRKSTPYAAQMAAEAAGRRAMDHGMKKIDVFVKGPGSGRETAIRSLGAIGLEVGTIQDVTPAPHNGCRPPKRRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD35</accession>
    <name>A0A0Q8VD35_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04880</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894411.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55130">
        <property type="protein sequence ID" value="KRC55130"/>
        <property type="gene ID" value="ASE19_04880"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1922611at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007511">
        <property type="entry name" value="DUF501"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37163">
        <property type="entry name" value="PTHR37163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04417">
        <property type="entry name" value="DUF501"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="164" mass="17347" checksum="32AFF4C1B6FDBA4C" modified="2016-01-20" version="1">MAAQLGRPMRGVAAIGHRCPCGNPDVVTTEPRLPNGTPFPTTYYLTCPRASSRIGTLEGTHVMKEMQDRLGTDPELAAKYRAAHEAYLADRTALAEAGGFEVPEIEGISAGGMPDRVKCLHVLAGHALAAGPGVNPLGDEVLEMLGPWWEKGPCVTVDEAVDGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD46</accession>
    <name>A0A0Q8VD46_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09385</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894578.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52640">
        <property type="protein sequence ID" value="KRC52640"/>
        <property type="gene ID" value="ASE19_09385"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="78" mass="8569" checksum="64B0CCC54E3EDB0E" modified="2016-01-20" version="1">MAKNKNQQVTNYLTGLVDTTKDLLDDLTSTAGKIEKKARKNGKKATKAVVPSKKDIKGVRDQVKDLSKQTQKLAKVAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD48</accession>
    <name>A0A0Q8VD48_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06595</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894498.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55096">
        <property type="protein sequence ID" value="KRC55096"/>
        <property type="gene ID" value="ASE19_06595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047341at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="100"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="155"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="201"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="234"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="288"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="315"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="382" mass="40051" checksum="BD6466F789BE706F" modified="2016-01-20" version="1">MSDGSQMYPPPGAPPPDQGTSWTPSPHVPPGSPVPHAPPGPPVPQPTSWAPYPTSGPGPRRGLALGAAHRPGAFPLRPLRLGDMYDGAFRIIRFNPKATVGAAVLVTAVAMLVPIVITAVLTGTVGLALDENGEVSSDAGVGEALAFLASGGSLLLAYVLSFIGLTLVTGMVVHVARAAAVGHRLDLGQAWAATLGKRWRLIGLGLLTTVTYVGVMTVYVLLWIVLVAADAPTLAVVLWGLVTVPAFIALCVWTWIKVFYLAVPTLMLEPVGVFGAIGRGWRLTRGQFWRTFGIALLTVIIASIGGSILSTPISFVGQIAMFLSSDYGFLILVVTQAVALVVQNAFTAPFQAGVTSLQYLDQRIRKEALDVELLREAGIVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDD2</accession>
    <name>A0A0Q8VDD2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">5-hydroxyisourate hydrolase</fullName>
            <shortName evidence="7">HIU hydrolase</shortName>
            <shortName evidence="7">HIUHase</shortName>
            <ecNumber evidence="7">3.5.2.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_06160</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the hydrolysis of 5-hydroxyisourate (HIU) to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>5-hydroxyisourate + H2O = 5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23736"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18072"/>
            <dbReference type="ChEBI" id="CHEBI:58639"/>
            <dbReference type="EC" id="3.5.2.17"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.17" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894433.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55023">
        <property type="protein sequence ID" value="KRC55023"/>
        <property type="gene ID" value="ASE19_06160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1955791at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033971">
        <property type="term" value="F:hydroxyisourate hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006144">
        <property type="term" value="P:purine nucleobase metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05822">
        <property type="entry name" value="TLP_HIUase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014306">
        <property type="entry name" value="Hydroxyisourate_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023418">
        <property type="entry name" value="Thyroxine_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000895">
        <property type="entry name" value="Transthyretin/HIU_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023416">
        <property type="entry name" value="Transthyretin/HIU_hydrolase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036817">
        <property type="entry name" value="Transthyretin/HIU_hydrolase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10395">
        <property type="entry name" value="PTHR10395"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00576">
        <property type="entry name" value="Transthyretin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00189">
        <property type="entry name" value="TRNSTHYRETIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49472">
        <property type="entry name" value="SSF49472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02962">
        <property type="entry name" value="hdxy_isourate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00768">
        <property type="entry name" value="TRANSTHYRETIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 7" id="KW-0659">Purine metabolism</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TR_THY" evidence="8">
        <location>
            <begin position="4"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR600895-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU361270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC55023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="105" mass="11015" checksum="E8C877C05112F5D6" modified="2016-01-20" version="1">MTTVSTHVLDAVLGRPAAGIAVVLGTAAGVPVAEGVTDPDGRIRYDAELAPGDHRLTFATGAWFAAQDRATFHPEVSVAFTAVEGEHHHVALLLSPFSYTTYRGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDN4</accession>
    <name>A0A0Q8VDN4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">2-oxoglutarate ferredoxin oxidoreductase subunit alpha</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_09965</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894672.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52737">
        <property type="protein sequence ID" value="KRC52737"/>
        <property type="gene ID" value="ASE19_09965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="360732at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016903">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07034">
        <property type="entry name" value="TPP_PYR_PFOR_IOR-alpha_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.920.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022367">
        <property type="entry name" value="2-oxoacid/accept_OxRdtase_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033412">
        <property type="entry name" value="PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019752">
        <property type="entry name" value="Pyrv/ketoisovalerate_OxRed_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002880">
        <property type="entry name" value="Pyrv_Fd/Flavodoxin_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002869">
        <property type="entry name" value="Pyrv_flavodox_OxRed_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17147">
        <property type="entry name" value="PFOR_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01558">
        <property type="entry name" value="POR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01855">
        <property type="entry name" value="POR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53323">
        <property type="entry name" value="SSF53323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03710">
        <property type="entry name" value="OAFO_sf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="POR" evidence="2">
        <location>
            <begin position="28"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="domain" description="POR_N" evidence="3">
        <location>
            <begin position="271"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="domain" description="PFOR_II" evidence="4">
        <location>
            <begin position="536"/>
            <end position="605"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF17147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="662" mass="70999" checksum="8DD7BB721DB1BDA7" modified="2016-01-20" version="1">MERVGPNVSQTKQVKQLDRVIIRFAGDSGDGMQLTGDRFTQESAVFGNDLVTLPNFPAEIRAPQGTIPGVSSFQIHFADHDILTAGDRPDVLVAMNPAALKANLGDLPRGATIIVDTHDFTKRNLDKAGYSSNPLDKLGEVDDILAGFQVQPVDLTGITVEAVKEFGLSRKDAARAKNMFALGLLSWMYGRPTEPTITFLERKFAKVADILGANIAAFKAGWNYGETTETFVVQYEIKPAKMPSGTYRNITGNLALSYGLVAAGVRSNLPVFLGSYPITPASDILHELSKHKAFGVTTLQAEDEIAGIGAAIGASFAGQLAITTTSGPGIALKSEAIGLAVMTELPLVVVNVQRGGPSTGLPTKTEQADLLQAMYGRNGEAPVPIVAPQSPGDCFAAAVEAARIAITYRTPVFLLSDGYLANGSEPWAIPSVEDLPVIDANFATEPNKTVTNAKGEQDTEFWPYLRDEATYARPWAVPGTPGLEHRIGGLEKGEGHGNISYDPANHDKMVRIRQEKIQRIADSLPPLEVDDPSGQAKVLVIGWGSTYGPIGAACRRVRRAGYDVAQVHLRHLNPFPKDLGEILKSYDKVLVPEMNLGQLSKMLRAEYLVDAQGYNHVYGLPLKAAELAEAIGALVGETEGREVNLGEHGLNLPADHEEAPNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDY9</accession>
    <name>A0A0Q8VDY9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4097 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10840</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894828.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52896">
        <property type="protein sequence ID" value="KRC52896"/>
        <property type="gene ID" value="ASE19_10840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1059710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025164">
        <property type="entry name" value="DUF4097"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13349">
        <property type="entry name" value="DUF4097"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4097" evidence="1">
        <location>
            <begin position="76"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="278" mass="28059" checksum="FA468B19C49FC181" modified="2016-01-20" version="1">MNGEPLVRTFDTPAPVQLYVENGAGRIVVVATDTAITHVRVAGLRADEATVTHDRDRISVIAPKWRGGLFRGDQSLDMEIEVPTGSSFVAKSGSADIDVTGEVAATKVKAGSGQVRLECIGESAVVDTGSGDVAIGAVAGALKVRSGSGDVVLDSAAGTTSISSGSGDIRIGHALSPVVVKTGSGDLEVLRSEDDIASTTGSGRVAIRSARRGRISAKGASGDIVVGVPAGTPVWTDITSISGRISSTLPSTGQPEPGVDHVEIRATTVSGDVALVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE30</accession>
    <name>A0A0Q8VE30_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">zinc-ribbon_6 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11015</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894860.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52928">
        <property type="protein sequence ID" value="KRC52928"/>
        <property type="gene ID" value="ASE19_11015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="923179at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031321">
        <property type="entry name" value="UCP012641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011201">
        <property type="entry name" value="Zinc-ribbon_6_bact"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15887">
        <property type="entry name" value="Peptidase_Mx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10005">
        <property type="entry name" value="zinc-ribbon_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF012641">
        <property type="entry name" value="UCP012641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="zinc-ribbon_6" evidence="1">
        <location>
            <begin position="4"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="328" mass="35763" checksum="82FB5CF85D802D44" modified="2016-01-20" version="1">MRAFTCRICDSPLFFENSVCVSCGTALGFSRTERDLVPLDADGRYVDQAGLVWHVCANLNLSGCTWLAPIEGGQCSACDLTRTRPAAEDLEGMAQFPAAEAAKRHLVVELDSLGFDLDGLVFDMLSSVDENVVIGHADGVITIDLAESDDARRERIREELGEPYRTLLGHLRHEVGHFLQSRLVTEAHPDRLARCRELFGDETADYQAAIDRHYAGGPPAGWEGWAITTYATMHPFEDFAETFAHYLHINDTCETAAAYGLVTVDVAAFSVFRDLVRAVWVPLSVALNQINRSMGKDDVYPFVIPAPVLDKLDFVAGLAGAGPAAGTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE99</accession>
    <name>A0A0Q8VE99_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">FAD-containing monooxygenase EthA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11175</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FAD-binding monooxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894890.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52957">
        <property type="protein sequence ID" value="KRC52957"/>
        <property type="gene ID" value="ASE19_11175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="324612at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004499">
        <property type="term" value="F:N,N-dimethylaniline monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020946">
        <property type="entry name" value="Flavin_mOase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00743">
        <property type="entry name" value="FMO-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="487" mass="54634" checksum="32A4B5DEA3E3EC13" modified="2016-01-20" version="1">MTDSVPTEHLDVLIVGAGLSGIDAAYHVTTSLPGKTYALLEMRDSLGGTWDLFRYPGIRSDSDMHTLGFGWKPWKGTKAIVDGPDILAYLKEAAAEHGIDEHIRYHHKLVHAEFSTEDARWTVTVERTDTGETLQLTSNFLWSTSGYYRYDEGFTPDFPGVGDYEGQLIHPQHWPEDLDYDGKRIVVIGSGATAVTLIPALANSGAGHVTMLQRTPTYIISQPTYDKVSAEMYKRLPDKLAQKLVRTRYLTSRIAFYEFCQARPKESRALLRKLLERQLPDDVKFDEHFKPPYDPWDQRLCAVPGGDLFKALRQHSVDIVTDHIDTFTPKGILLKSGKELEADIVITATGLNLQIFGGATLGVDGQVISPSDTMAYKGLMLSGIPNFAFIIGYTNASWTLKADLVCEYVVKVLQHMDRTGTRTVVPVRDPSVTEEPFLDFEAGYVMRSINALPKQGSQFPWRLKMNYFKDVLVFRKPVEDKALEFSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEB1</accession>
    <name>A0A0Q8VEB1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07700</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53955">
        <property type="protein sequence ID" value="KRC53955"/>
        <property type="gene ID" value="ASE19_07700"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2010.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010428">
        <property type="entry name" value="Zincin_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038555">
        <property type="entry name" value="Zincin_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06262">
        <property type="entry name" value="Zincin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="118" mass="13284" checksum="2FE76B3050E00610" modified="2016-01-20" version="1">MPVDMSPEEFDALVDTALDEIPEELARLVHNVVVLVEQEPPDDEPDDLLGLYDGVALTERDGGLLPQLPDRIFLFRGPLLDMCEDVEELAEEIRITVVHEVAHHFGIDDDRLHELGYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEL8</accession>
    <name>A0A0Q8VEL8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Homogentisate 1,2-dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_11735</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the homogentisate dioxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894983.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53053">
        <property type="protein sequence ID" value="KRC53053"/>
        <property type="gene ID" value="ASE19_11735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="193687at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004411">
        <property type="term" value="F:homogentisate 1,2-dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006559">
        <property type="term" value="P:L-phenylalanine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006570">
        <property type="term" value="P:tyrosine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005708">
        <property type="entry name" value="Homogentis_dOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11056">
        <property type="entry name" value="PTHR11056"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04209">
        <property type="entry name" value="HgmA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="400" mass="44372" checksum="3E24A9EC8C365668" modified="2016-01-20" version="1">MAHYQRIGFVPPKRHTQHRAEDGTLHFEELMGEEGFSSDSSLLYHRTIPSAVVEARVWDLPDLATTPNHPLVPRHLRLHELFAGEAWKETDAVTGRRLVLGNGDVRISYAVCGRTSPLYRNGIGDECVYVESGTAIVETVFGALEVGEGDYVVLPRATTHRWVPTGREPLRLYVVEANSHITPPKRYLSRFGQLLEHAPYCERDLRTPSEPLLADDEGPVEVFIKHRGPGPGGIAGTVHVVPDHPFDVVGWDGCLYPYVFNIADFEPITGRVHQPPPVHQVFEGHNFVICNFVPRKVDYHPLSIPVPYYHSNVDSDEVMFYVGGDYEARKGSGIGQGSISLHPGGHAHGPQPGAYEKSIGVEFFDELAVMVDTFRPLELGEAGQACDDGVYVTSWVRGQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF08</accession>
    <name>A0A0Q8VF08_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Acetyl-CoA acetyltransferase</fullName>
            <ecNumber evidence="6">2.3.1.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_08745</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.9" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895563.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54131">
        <property type="protein sequence ID" value="KRC54131"/>
        <property type="gene ID" value="ASE19_08745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="550338at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003985">
        <property type="term" value="F:acetyl-CoA C-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="5">
        <location>
            <begin position="261"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="2">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="339"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="383" mass="40365" checksum="81E6D8CCA068C61D" modified="2016-01-20" version="1">MSEAYIVEAVRTPVGRRKGGFAGVHPADLAAHSLKELVARAGVDPSLIEDVVLGCLDNIGAQAGDIARTSALAAGFPISVPGVTIDRQCGSAQQAVSFAAMGVKSGMQDLVIAGGVQKMSQFPILSAFGAGEPFGSTDPWTGSEGWQARFPGEEISQFRGAEMMAEHWKISRDDCEEWAYQSHQRALAAIDAGYFEKEISPFAGVSVDEGPRRDTTREKMAELQTLTPDGILTAGVASQISDASAALLIASEAAVKEHGLTPRARIHHASVRGDDPVMMLSAPIPATQYALKRAGLTIDDIDVVEINEAFAPVVLAWNKELNADPAKVNPNGGAIALGHPIGATGARLMVSMLHELERTGGRYGLQTMCEGGGQANVTIIERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF32</accession>
    <name>A0A0Q8VF32_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Flagellar motor switch protein FliM</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_09315</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Bacterial flagellum basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FliM family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894564.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52626">
        <property type="protein sequence ID" value="KRC52626"/>
        <property type="gene ID" value="ASE19_09315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1748746at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd17908">
        <property type="entry name" value="FliM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028976">
        <property type="entry name" value="CheC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001689">
        <property type="entry name" value="Flag_FliM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001543">
        <property type="entry name" value="FliN-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036429">
        <property type="entry name" value="SpoA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02154">
        <property type="entry name" value="FliM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01052">
        <property type="entry name" value="FliMN_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002888">
        <property type="entry name" value="FliM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101801">
        <property type="entry name" value="SSF101801"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103039">
        <property type="entry name" value="SSF103039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11" id="KW-0966">Cell projection</keyword>
    <keyword evidence="6" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="11" id="KW-0969">Cilium</keyword>
    <keyword evidence="7" id="KW-0283">Flagellar rotation</keyword>
    <keyword evidence="11" id="KW-0282">Flagellum</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FliMN_C" evidence="10">
        <location>
            <begin position="244"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC52626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="318" mass="34337" checksum="85F63DE2D0A897A4" modified="2016-01-20" version="1">MASRCDDGCCVTLAPQRPRRRPRTTEPTPYDFRRPIQLSREHQRTLQLGFDGFARQATTVFTSSLRTVCTVALVGIEQRTYAEYVDSLGPSTYMTLFSADPMPGTGVLEIPLFATMSCLDHMLGGPGSDEQPDRPLTEIEDGVFSGLVERLLGEMRYSLEGLVALEPTITGIEYSPQFAQVAAAADVMVVVSLELKIGEQAHRMSVCLPFSGLLPHLTNASGSGAMSDRERAQRAESAQLLQEQFNRVPVSVAVRFRPITLDPGVLAALEPGSVVRLSHPASAPLDVTVAGNTFAHATPGARGQRLAALIVTTPEENS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFG4</accession>
    <name>A0A0Q8VFG4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-oxoacid:ferredoxin oxidoreductase subunit beta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09970</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894673.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52738">
        <property type="protein sequence ID" value="KRC52738"/>
        <property type="gene ID" value="ASE19_09970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="981516at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TPP_enzyme_C" evidence="1">
        <location>
            <begin position="71"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="367" mass="38883" checksum="5A27CC8AA46B0921" modified="2016-01-20" version="1">MSTIDLPMPSLGTALVPTLAEGETQTAKDFSSDQEVRWCPGCGDYAVLKAVQSFLPDLGLRRENIVFVSGIGCSSRFPYYLDTYGMHSIHGRAPSIATGIATAREDLSVWVVTGDGDALSIGGNHLIHALRRNVNMTILLFNNRIYGLTKGQYSPTSEVGKVTKSTPVGSVDHPFNPVSLALGAEASFVARTIDSDRKHLTAVLAAAAAHRGTSFVEIYQNCPIFNDGAFDAIKDRDNSHALIPLTHGQPITFGVQDEATGLGDKALVRGAGGGVEVVDTASAAADAIIVHDAQNPDPSTAFAISRLTDAGYLNRSPIGIFRQVDRPTYDDQARAQVAVASEAVASKGTAEERLTALINGGDTWTID</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG41</accession>
    <name>A0A0Q8VG41_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14300</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896999.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53504">
        <property type="protein sequence ID" value="KRC53504"/>
        <property type="gene ID" value="ASE19_14300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1758560at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025238">
        <property type="entry name" value="DUF4184"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13803">
        <property type="entry name" value="DUF4184"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="181"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="212"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="242" mass="25660" checksum="2E0CA60062CF8959" modified="2016-01-20" version="1">MPVTLAHPAAVLPLRALGLPLSALVIGSMAPDLPVFSRSWGFYDFTHSAAGVVTVDLALTLLLLVLWDRWGRDALVDTSPALARDRLPRHARLSRRSWLLAPLAAVVGSITHVVWDAFTHAGRWGVRMVPWLQEVHGSMRGQQWAQDVSGVVGLTIVGLAILAVVRRPVLPDAGRPRRLPAATLPVAVAGACGLSVLTFAARLGTDFQSDAFYAAVVGIVSLGLALAAVTLAWVAVSDRVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGP9</accession>
    <name>A0A0Q8VGP9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01995</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892646.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56629">
        <property type="protein sequence ID" value="KRC56629"/>
        <property type="gene ID" value="ASE19_01995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1675298at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="122"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="154"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="219"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="256"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="281"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="323"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="354"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="530"/>
            <end position="551"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="561" mass="58461" checksum="0AD7B851A948A2B0" modified="2016-01-20" version="1">MRRPGPDLAVTGLVALVVLGPLLLGTGFWLVGDMVFVPDQPWKSAWLGLDGALPRAVPMDALVSLATYVVPGALVQKALLVGGFLAGGLGAGRLVREQAWFARAAAITLFCWNPWVHERLLIGQWAILLGYLLLPWVALAALRLRRDPTDVAPAAVVLVVSAVCSPSSGVMAVGVLVLLGLTRDRRGWWRAALVAVLANLPWLVPALTADAVDVSTDGVFAGFAARAESGAGTLASLFSLGGIWKTSILAGERTSALLVLLSCLLSVVALVGLWRGAPDRARWLTVGGTALLLALLPTTAAGADLLEQVGEVVPGVALLRDSHRFLAPLGLVLAVGAAHAATQLRAAIRPGRGALWSAVGLLVAAPVLLLPSLAWGGGGEIERSSYPQAWADVADLVGPDELTVVLPWAGSYRGFDWNHRRAVLDPAPRLLPGTVLVDDSVRLTDRVVPPEDPRVVAVAGALEADDPAAALRDLGVRWVLVERGMGDVEVPAAEVRYDAGGLTLLDLAADGPVATGATPARPALARWQEILVSFGHGLAILLLLVGATGILRPGSNGRHTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGQ0</accession>
    <name>A0A0Q8VGQ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12730</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895840.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53661">
        <property type="protein sequence ID" value="KRC53661"/>
        <property type="gene ID" value="ASE19_12730"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.225.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001303">
        <property type="entry name" value="Aldolase_II/adducin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036409">
        <property type="entry name" value="Aldolase_II/adducin_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00596">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01007">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53639">
        <property type="entry name" value="SSF53639"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldolase_II" evidence="1">
        <location>
            <begin position="6"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="216" mass="22191" checksum="544E1584560877B9" modified="2016-01-20" version="1">MADLRAEVAGASRRLADAGLLVGTAGNVSARTGDLVALTGTGVVLGTCTPDDVTVVSLSGTVVEGRLAPTSELSLHLGVYADSSPDQLAAVVHTHAPFATAVACVLDELPVLHYQQLALGGEVRVASYATFGTDDLAGHVRAALAGRSAALMANHGSIAVGATLDKAVENALLLEWLCQLHHRASALGTPRVLTAEQQADVIRVAIERDYGSPKEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGU1</accession>
    <name>A0A0Q8VGU1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_12070</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53649">
        <property type="protein sequence ID" value="KRC53649"/>
        <property type="gene ID" value="ASE19_12070"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025966">
        <property type="entry name" value="OppC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12911">
        <property type="entry name" value="OppC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="29"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="97"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="129"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="155"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="207"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="258"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="11">
        <location>
            <begin position="90"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="10">
        <location>
            <begin position="326"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="362"/>
            <end position="369"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC53649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="648" mass="68390" checksum="B69625D55FE3F2CA" modified="2016-01-20" version="1">MEGPSTDEEFRRAAERGAGFFSRLLRQPLVVVCALVLMIVVVGCLLAPWVSPYAPLEQDLLNIYAKPSADHLLGTDQLGRDILSRMLHGGRVTLAGIAQAVAVCTAIGLCLGMAAGTLGGWVELVAMRLCDLLLAVPGLVMLLVVLGIYGNNETAAMITLGVIMSPTLARVVYSATIAVREEPYVAGARVAGLTSLQIMRRHILSGVAGPALTQISIVAAVACLVEAGIGYLGLGVTPPAPSWGNMVTDAQQAMPLDAWMLVPTGGIIAIVTLSLTLIGNGVRDAYMGRSSGSTKSFSWRALAARVSQPLTPARPGETPPGREAVLSVNRMTVSLPRGKGEIPIVDTVSFDVKPGEAVAIVGESGCGKSMTISGVLRVLPMGAHVQAASITFKGVELTSLSERQMNSYRGTGIGFISQEPISSLNPAFTVGHQLEEAVRLHRGLSKHEARQIAHELMTRVRLPDPEVVAKKYPHELSGGMAQRIAIARALAGEPELLIADEPTTALDVSVQCEILDLLRDLREQSGMALILVTHDWGVVAETCDRALVMYAGQIVERADVRTIITRPTHPYTRALLHSSSVGAAPRQLLPVIAGAVPPPGSWPLGCRFASRCGLVEDACRSGFIPMVSLGEGAGARCIRTAQDGLVKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGZ3</accession>
    <name>A0A0Q8VGZ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_02685</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892764.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56746">
        <property type="protein sequence ID" value="KRC56746"/>
        <property type="gene ID" value="ASE19_02685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1559784at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045980">
        <property type="entry name" value="DUF5936"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018076">
        <property type="entry name" value="T2SS_GspF_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19359">
        <property type="entry name" value="DUF5936"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00482">
        <property type="entry name" value="T2SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360024" evidence="7">
        <location>
            <begin position="21"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="103"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="130"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="277"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5936" evidence="9">
        <location>
            <begin position="74"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSF" evidence="8">
        <location>
            <begin position="169"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF19359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC56746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="308" mass="33318" checksum="317623762919F762" modified="2016-01-20" version="1">MMLLLLGFVLLVGAVAAASAAFVKGETTDGLSRALEALERQGTHDPEFTREAELPFTDRVIGPLQERALGVGRRITGADQSERIRHKLERAGNPRGWTVDRVISSKVLGAVVVPLAAVALALLLEATAAIVLLAAIVGVVLGFFAPDLYLYNTAQKRADQVKRTLADAVDLLTISVEAGLGFDAALQQVARNTDGPVAEEFSRMLREMQLGRSRADALRTLGERSDVEDLKTFAGSMVQADAFGIPIGQVLRVQSNEIRVKRRQYAEQKAQQVPVKIMIPLVLFILPCLLIIVMGPAILQAMDAFKGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH28</accession>
    <name>A0A0Q8VH28_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 8">Translation initiation factor IF-2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">infB</name>
        <name evidence="11" type="ORF">ASE19_02965</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892813.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56794">
        <property type="protein sequence ID" value="KRC56794"/>
        <property type="gene ID" value="ASE19_02965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="107876at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03702">
        <property type="entry name" value="IF2_mtIF2_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10050">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00100_B">
        <property type="entry name" value="IF_2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044145">
        <property type="entry name" value="IF2_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006847">
        <property type="entry name" value="IF2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000178">
        <property type="entry name" value="TF_IF2_bacterial-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015760">
        <property type="entry name" value="TIF_IF2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023115">
        <property type="entry name" value="TIF_IF2_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036925">
        <property type="entry name" value="TIF_IF2_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43381">
        <property type="entry name" value="PTHR43381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11987">
        <property type="entry name" value="IF-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04760">
        <property type="entry name" value="IF2_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52156">
        <property type="entry name" value="SSF52156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00487">
        <property type="entry name" value="IF-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01176">
        <property type="entry name" value="IF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 7 8" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="10">
        <location>
            <begin position="451"/>
            <end position="623"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="57"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="9">
        <location>
            <begin position="113"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="9">
        <location>
            <begin position="157"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="9">
        <location>
            <begin position="199"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="460"/>
            <end position="467"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="510"/>
            <end position="514"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="564"/>
            <end position="567"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC56794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="958" mass="98726" checksum="F912A0890C4D09D5" modified="2016-01-20" version="1">MAKTRVSELAKQYGIPSKEALEKLSAIGEFAKTASSSIELPAVKKFEATYGAELLAKMSPGGDAPAEPAKAAPKPAPAKKAAAAPAPEAPAAPAAEAPAAPAAEAPAAPAAPVADKPAGPRPGPRPGPKAPAAEPEPTPAPAAPEAPAAAASAPAPAKPAGPKPPTPKAPGAAPAPRPVGKPGGTPRPGNNPFAPSQGMGRRPSPPPREGEAGPAGPRPPAGAGGAPRPGMPRPNPAMMPKSPAAFGQGPGGRGPGGPGRGPGGPGRPGGAPGRAGAPGRGGAGAGAPGAGRPGGGGFGPAGGGRPGGGGRPGQRGQTQGAFGRPGGPARRGRKSKRARRQEFEAMEAPTIGGMRVRKGNGETVRLARGSSLTDFAEKIGVDAASLVQMLFHLGEMVTATQSVGDETLELLGDELNYVVEVVSPEDEDRELLETFDLEFGADEGGEEDLVIRPPVVTVMGHVDHGKTKLLDALRDANVVAGEAGGITQHIGAYQVHTEVDGNDRRITFIDTPGHEAFTSMRARGAQATDIAVLVVAADDGVMPQTVEALNHARAANVPIVVAVNKIDKESADPTKVRGQLSEYGLVPEEYGGDSMFVDVSAKAGLNLDKLLEAIVLTADASLDLRANPVQDAQGLVIEAHLDRGRGPVATVLVQRGTLRVGDSIVAGPAHGRVRAMLDEHGNELTEADPARPAMVLGLSSVPGAGQNFLVVEDDRMARQIAEKREARERAALQAKRRVRRTLEDFMASMEKGESQELNLILKGDVSGSVEALEDALAQIDVGEEVSLRVIDRGVGAITETNVDLAAASDAIIIGFNVRPQGKAGQMAEKEGVEIRYYSVIYQAIEEIEAALKGMLKPEYEEQTLGQAEIRAIFRSSKIGNIAGCMVIGGVIRRNAKVRVLRDGAVIADNLDLASLKREKDDASEVREGFECGLVLRNFQDIKEGDIVEAFEMKEIPRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH88</accession>
    <name>A0A0Q8VH88_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02865</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the shaker potassium channel beta subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892794.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56776">
        <property type="protein sequence ID" value="KRC56776"/>
        <property type="gene ID" value="ASE19_02865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1351747at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005399">
        <property type="entry name" value="K_chnl_volt-dep_bsu_KCNAB-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43150">
        <property type="entry name" value="PTHR43150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01577">
        <property type="entry name" value="KCNABCHANNEL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="2">
        <location>
            <begin position="16"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="336" mass="36470" checksum="B11BC13CC8A223ED" modified="2016-01-20" version="1">MEIRNLGASGLRISAIAYGNWLTHGSQVEEDAALACVRQALDEGITTFDTADVYANTAAETVLGKALTGERREGLEIFTKVFWPTGPGRHNDHGLSRKHILESIDGSLRRLGTDYVDLYQAHRYDHETPLEETMLAFADVVRSGKALYIGVSEWRAEEIRAAAALAKELRVPLISNQPQYSMLWRVIEEEVVPTSKELGLGQIVWSPIAQGVLTGKYLPGQPPPAGSRATDTKGGADFVGRWLRDDVLERVQQLRPVAESVDLTLAQLAVAWVLQNDNVSAAIIGASRPEQVTENVKAAGVGLDAETLAAIDRVLDGVITTDPALTTSPRRSEVIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHE6</accession>
    <name>A0A0Q8VHE6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03730</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892939.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56922">
        <property type="protein sequence ID" value="KRC56922"/>
        <property type="gene ID" value="ASE19_03730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1974703at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009732">
        <property type="entry name" value="DUF1304"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06993">
        <property type="entry name" value="DUF1304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="127" mass="13314" checksum="BD310A774D96F95D" modified="2016-01-20" version="1">MTAVALVFAGLAAALHVYIWVMESLTWTSPRTRATFGITAEQAEATKEMAYNQGFYNLFLAIVTFAGVGAHLADEETVGTTLVLTGAGSMVAAGLVLLLSSPDKARAAITQLAFPAVAVVLLVIDRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHL1</accession>
    <name>A0A0Q8VHL1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">RNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_04160</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Ro 60 kDa family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893019.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57002">
        <property type="protein sequence ID" value="KRC57002"/>
        <property type="gene ID" value="ASE19_04160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="912523at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040322">
        <property type="entry name" value="TROVE2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008858">
        <property type="entry name" value="TROVE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037214">
        <property type="entry name" value="TROVE_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14202">
        <property type="entry name" value="PTHR14202"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05731">
        <property type="entry name" value="TROVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140864">
        <property type="entry name" value="SSF140864"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50988">
        <property type="entry name" value="TROVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="TROVE" evidence="4">
        <location>
            <begin position="25"/>
            <end position="354"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC57002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="519" mass="56560" checksum="9D639BA8876831BC" modified="2016-01-20" version="1">MSKFNLRGIRRTGASAVVTADRPSGTTHEGAPGYARDAKGELFLLAVTSFVAEDTFYESAADRDARLRALVARVAVEDGDWVLRLVRWLRTGVHLRSVALVVAAEAVRARLAAGVAGGNRAIVDAALDRADEPGELLAYWTGRYGRAVPKPVKRGVADAAVRLYTERSLVKYDGRGRGFRFADVLELTHPSPRDARQGVLFRHAIDRRHDRADAIPDELGVLRARQRLLAVPVEQRRAVLLDGERALTSAAMTWEQVAGWLQGPLDAAVWEAVIPSMGYMALLRNLRNFDEAGVSDEVAARVAARLADADEVARSRQLPLRFLSAYRTAPSLRWGWALEQALQASLGSVPALPGRTLVLVDRSGSMFSRLSRRSVLTRADAAAVFGVALAVRAARADLVEFGTDHRVVEVGRGESVLTVAGRFGNLGGTNTAAAVRRHYRGHDRVVLVTDEQAWGGWRGEEPTKAVPERVPVYTFNLAGHRYGHGPSGVGNRHTFGGLTDQGFAAIPLLEQGRDERWPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHN8</accession>
    <name>A0A0Q8VHN8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Tryptophan synthase beta chain</fullName>
            <ecNumber evidence="7">4.2.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">trpB</name>
        <name evidence="9" type="ORF">ASE19_02160</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + L-serine = D-glyceraldehyde 3-phosphate + H2O + L-tryptophan</text>
            <dbReference type="Rhea" id="RHEA:10532"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.2.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Tetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the TrpB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.20" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892672.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56655">
        <property type="protein sequence ID" value="KRC56655"/>
        <property type="gene ID" value="ASE19_02160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="912282at2"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004834">
        <property type="term" value="F:tryptophan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06446">
        <property type="entry name" value="Trp-synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00133">
        <property type="entry name" value="Trp_synth_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006654">
        <property type="entry name" value="Trp_synth_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023026">
        <property type="entry name" value="Trp_synth_beta/beta-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001413">
        <property type="entry name" value="Trp_syn_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00263">
        <property type="entry name" value="trpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="6 7 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 7" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="PALP" evidence="8">
        <location>
            <begin position="62"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="7">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="404" mass="42432" checksum="3DCC499202FC8730" modified="2016-01-20" version="1">MSTYDADELGWFGGVGAFGGRFMPEALMAALDELDIAWQKAMVDPTFIAEFEDLLQNYAGVPSMLYEAKRLSDHAGARILLKREDLNHTGAHKIRNVLGQALLTKRMGKTRVIAETGAGQHGVASATAAAYLGLDCTVYMGEVDTERQALNVARMQLLGAEVIPVTSGSRTLKDAINEALRDWVASVDQTAYLFGTAAGPHPFPSLVLSFVRGIGDEARQQCLDQFGGLPDAIAACVGGGSNAIGLFAGFVDDPEVAIYGFEAGGDGVETGRHAATIFAGSIGVLHGARTFVLQDDDGQTVESHSISAGLDYPGVGPQHSALSAAGRATYLPVTDAEAMDAMALLARTEGIIPAIESAHAVAGALRVAKERPGQTILVNLSGRGDKDMGTAMDWFHLGEAGEKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHP2</accession>
    <name>A0A0Q8VHP2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Diacylglycerol O-acyltransferase</fullName>
            <ecNumber evidence="5 11">2.3.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_03555</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>a 1,2-diacyl-sn-glycerol + an acyl-CoA = a triacyl-sn-glycerol + CoA</text>
            <dbReference type="Rhea" id="RHEA:10868"/>
            <dbReference type="ChEBI" id="CHEBI:17815"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="ChEBI" id="CHEBI:64615"/>
            <dbReference type="EC" id="2.3.1.20"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Glycerolipid metabolism; triacylglycerol biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the long-chain O-acyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.20" evidence="5 11"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892909.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56892">
        <property type="protein sequence ID" value="KRC56892"/>
        <property type="gene ID" value="ASE19_03555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="279287at2"/>
    <dbReference type="UniPathway" id="UPA00282"/>
    <dbReference type="UniPathway" id="UPA00695"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004144">
        <property type="term" value="F:diacylglycerol O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019432">
        <property type="term" value="P:triglyceride biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014292">
        <property type="entry name" value="Acyl_transf_WS/DGAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045034">
        <property type="entry name" value="O-acyltransferase_WSD1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009721">
        <property type="entry name" value="O-acyltransferase_WSD1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004255">
        <property type="entry name" value="O-acyltransferase_WSD1_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31650">
        <property type="entry name" value="PTHR31650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03007">
        <property type="entry name" value="WES_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06974">
        <property type="entry name" value="WS_DGAT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02946">
        <property type="entry name" value="acyl_WS_DGAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8 11" id="KW-0319">Glycerol metabolism</keyword>
    <keyword evidence="6 11" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="9 11" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="WES_acyltransf" evidence="12">
        <location>
            <begin position="13"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="WS_DGAT_C" evidence="13">
        <location>
            <begin position="320"/>
            <end position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU361241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF03007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF06974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC56892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="485" mass="52628" checksum="EC4386F22D5C5B2D" modified="2016-01-20" version="1">MNGPKVRPAIERMTGFDAGFLYMETPSVHMHTLKIAILEADDALSYDAFVGGILARLKRLPPLRRRVVEVPLGLNHPVWVTQRRIDVAHHIRRHRIGGPDGTGSMRDLEQLIGMIASTPLHRDRPLWELHYCEGLEGGKVAVVGKMHHALADGAAANALLANVTDVRSANPPEAVHEEYATTDRLPSRWNLLRHAWADAAHQFLDLPDLLRRTVLGVRGVIRARRAGANAPVPVLHAPRVSFNGALTPLRSFATVSLPLGELKRIRAQHDGVTLNDVVLATASGALRTWLAAHDEHPASSLLAGVPVSTDERGTVPRLGGNQVSNLFTTLATDVDDPVARLRRISETTTHAKEIHAQLGASILVDWSQFTPPRPFAAAVRAYSRLRAASWHPAAFSAIVSNVPGPREPAAVGGARLADLFSVGPLVDGIGLNVTVWSYVDRMNFSLLACPDLLPDVHVLASYFPAALAELDLEPPADASERRNFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI62</accession>
    <name>A0A0Q8VI62_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_08250</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895481.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54049">
        <property type="protein sequence ID" value="KRC54049"/>
        <property type="gene ID" value="ASE19_08250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="856767at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="240"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="296"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="339"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="389"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="415"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="472"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="682"/>
            <end position="706"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="727"/>
            <end position="753"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="773"/>
            <end position="793"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="7">
        <location>
            <begin position="273"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="7">
        <location>
            <begin position="710"/>
            <end position="802"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC54049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="810" mass="82828" checksum="13A2E9BF0EEF968F" modified="2016-01-20" version="1">MRTVLLASLRTHTRRYGAALLAVLVGVVLVLVTASLSSAVRDGLTSGLAEPYDGADAVLGHPSPDDAARLLAAAPEQGADAWLLGWTLQQLSHDGRVVSTDSDIGPVADEPAGRWQELTSGRFPDRPGEAVLDNNAAKAAHLAVGDRLRIGTGSSALDVTVVGLVDSPSTYVVASVYVLWTDLARWQDHLYVSSLAWAGPEPGYDGARDAIRAVVPGAEPDTVDAFVQEVQKDVNRGVDVIAIVALLFAAVALLVAVLVINNTFTILFAQRSRDFALLRCVGATRRQVVRSVRLESLALGLLAAVLGTAGGLAAGQGLVALIHGQWPEARLGDAEVGTVWLVVAATLAVGVPVVAAWLPTRRVVRVSPLAALRPDDSTQVGTATGRTRVAAGVLLLLAGTAAFAVALAAAVPPALVAGGVATFVGVLLLGPVLVPALVRGLARLGRRLMGPAGRLAAGNAVRNPRRTAATTASLLIGVTLTTAVLTGLASSRSALADEMDDQHPVDIAITSARALPADTVDRARAVDGVAAALPVTGTTAEVAALGDVAVLGVPPAGADSVLHGKVRTPGPRAIVLPWDLIGDGLEVGDRVAVTVGERTVRLRVRAGDGWGEAALVAPGTLARLDPSPRLHAVWVRADEDADPEDLAGSMEAIGSPLGAGIENGLADRAYVDLQLDVLSGGVVGLLGISVVIALVGIANTLGLSVLERGREHALLRALGLTRRQVRRMLAAEAVLLATVATALGTVLGVVFAWLGVRSLVEPVVTGASLVLPWTQLGAVVVLAALAGLAASVLPARRAARTAPAAGLALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI77</accession>
    <name>A0A0Q8VI77_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF58 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05805</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54963">
        <property type="protein sequence ID" value="KRC54963"/>
        <property type="gene ID" value="ASE19_05805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="848990at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002881">
        <property type="entry name" value="DUF58"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01882">
        <property type="entry name" value="DUF58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="domain" description="DUF58" evidence="2">
        <location>
            <begin position="214"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="405" mass="43827" checksum="7374910A941A3EAA" modified="2016-01-20" version="1">MLAAVRQRTERVRRAVAPVTARVAAGARTFTVAGRAVLVLTVVTWLLGWRLGWEEMIVVAGTGVVLLAVSALFMIGRTHIEVQLEVEPPRVTVGDAVAGSLDVRNRAKTPLLPFVLELPVGEGGVAFSYPLMRPGASHEELFVVPTEKRGVIDVGPATSVRGDPVGLFRRDIGWSEVTEIFVHPQVVQLEPLGTGLLRDLEGTTSNNVSMSDLAFHALREYSPGDDLRHVHWRSSARHGKLLVRQFLDTRRSHLNVVVDCRPSSWRSEQDYETAVSVAGSLLVRALLDEYDASFVSGTNQASKVGGKAVLDVCARAEQQGDDLVTAAGRAARLAPDTSLLFLVAGPHTDFVQLQRAANQFPIDVTTVAMRVDAELAPSLRTAGDLPLLSLGRLDQLPALLRWGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIG8</accession>
    <name>A0A0Q8VIG8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_11230</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894900.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52967">
        <property type="protein sequence ID" value="KRC52967"/>
        <property type="gene ID" value="ASE19_11230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="38276at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032109">
        <property type="entry name" value="Big_3_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025883">
        <property type="entry name" value="Cadherin-like_b_sandwich"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012878">
        <property type="entry name" value="Glyco_hydro_127"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16640">
        <property type="entry name" value="Big_3_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12733">
        <property type="entry name" value="Cadherin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07944">
        <property type="entry name" value="Glyco_hydro_127"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360098" evidence="1">
        <location>
            <begin position="35"/>
            <end position="1466"/>
        </location>
    </feature>
    <feature type="domain" description="Cadherin-like" evidence="2">
        <location>
            <begin position="1190"/>
            <end position="1278"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="3">
        <location>
            <begin position="1391"/>
            <end position="1465"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1466" mass="155881" checksum="1F7F96A11EE406F8" modified="2016-01-20" version="1">MSSTVPALRRLPGAAVALLVLTAVFALPAPAARAATVLDDPALLLAFEDNLADTSGAQQPVSAHKVGAGDPSYSFVDGVTSGSRALQLTSGTYLDLGSDVALQPAALTLSFWLKPSTAMSGEQVITWNKQAYNSDGWYLSSESNTSPLALSVGPSSSQPYKLRVASTDRAAFFPAGQWTHVVVSYDSATRTARFYRNGVKIASQVASAAGGTSTGVITGSASLPKTIGFNGPQYNGAFLTSALDQYGLYAGVASTDDVVTLYEQGGGSLDKSALAQAAADDINVPATASVGLALPTEGANGASIGWESSDPDVISPSGEVTQPDSGADDAEVTLTATIRFADGAPVTRTFTVTVPAPREVLEDSGVVDVRVDDAYLDNAAAKEQEYLTSLDSGKFLYWFYRTAGLTPPTASGYGGWEDGSVGGNFRGHAFGHYMSALAMSWASTTDADTKVALRAEIDQAVAGLGDVQASYAGTAKAGYIGPFRPTALDAVEGRGTSDDAVIVPYYNLHKVLAGLLDIDKYVGGATGDQALQVAEAFGEYLYGRVSTLSDTTVMLRTEYGGMNDALYELYARSGGNAHFKKAAEAFDEVSLFRQLANGEDPLSGKHANTTIPKLIGALRRYTVLTQHPDLYAQLTEQEKADLPMYLQAAQNFWQVVVDDHTYATGSNSQAEHFHDPESLYEFATQKGSTGNAETSETCNEYNMLKLSRELFKLSQDVKYADYYENTFLNHIVSSQNPDTGMTTYFQAMAPGYYKLYSLPYTLFWCCTGTGMENFSKLGDSIYFMGAGSVWVNMFFSSRFTDDETNLAVTQEAELPTSDTVTFRIAAADGGVVAPDAELRLRVPDWVDGAPALTINGTSSEPTVDHGYVVLTGLAAGDVITYRLPMKVQVIETPDNADFFAFKYGPTVLSAGLGTKDLDKYNPVGILVRVPALDTEAQQIITVDADSVAAWKADIAQNLVRVADSADGQVRFELRNTVDGGDLVFTPHYRRHGERYGLYFSYETRDSAAAQQRILDAKKLLREDEVVIDSLDSFDNNNFENAKNLKASSTSSVGTFNGRQFRHAPGPDGWFSYDLVVDPSQPRNYLRARYYSGDAGRSFDVYLNDVKLKTQAITTAAGTNVFYLQSDEIPRAHLDDPRWKVDSSGNPVLDGQGDKIPVVTVRFQSTGGYAGGVFGVATTGPQEYDDDARLSALSADTGELAPAFDPDVADYTLTVAPGTTEVGLDLDPRVPSGLVKVDGVLVDDTVARVVDLDADGDTTVQVTSFAQDHTTSRGYTVHVVEGDGPAPVATVKPAVTGVPQLGRTLQASTGTWDVAGVTLSRQWLANGSPIAGATGASYQLRKGDVGKRISVRVSATIDGRKPGSADSTPTAAVRRGSSQLTVRTSRAVVAKRGSVVVAARVSATGVVATGRVAVLDNGRLVARPILVNGVAKVTLRLARAGRHTIVVSYAGTSWLAPSRGTAVVRVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VII7</accession>
    <name>A0A0Q8VII7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">ACPS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06970</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54189">
        <property type="protein sequence ID" value="KRC54189"/>
        <property type="gene ID" value="ASE19_06970"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008897">
        <property type="term" value="F:holo-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.470.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008278">
        <property type="entry name" value="4-PPantetheinyl_Trfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037143">
        <property type="entry name" value="4-PPantetheinyl_Trfase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01648">
        <property type="entry name" value="ACPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56214">
        <property type="entry name" value="SSF56214"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACPS" evidence="2">
        <location>
            <begin position="103"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01648"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="22065" checksum="37A86E01B902305B" modified="2016-01-20" version="1">MAIERFDDDELDLGARWLDDAERQQASSYVRAELRRAYVLAHAAARRVVGLATDTPPEKVVWGRHACPGCGEPHGRPRAEGAAVEFSLSHTPGQVLIAVADVPVGVDVERHPDDPVALAGVLHPRETEEIQAAAHGTLDGGRATVRFTRAWSRTEAYLKGIGIGLGRDPHLDYLGTDDAPGRTLGGWVVRDVLVPEGYGAAVAVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJB2</accession>
    <name>A0A0Q8VJB2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sugar kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895686.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53223">
        <property type="protein sequence ID" value="KRC53223"/>
        <property type="gene ID" value="ASE19_12735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1604782at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="1">
        <location>
            <begin position="27"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="307" mass="30678" checksum="1F843D6E819AFC76" modified="2016-01-20" version="1">MSMSVAAVGVHVLDTHVLGIESIPEGSDGQLVETIRMSPAGTAGGTAVVLARLGATVRSYGAVGTDPVGDTLLSLLTREGVDVGGLVRKPDSQTSASVLPVRSNGDRPAWHCIGANGAFTLDDLPTDLLDGITHLHLGGPEFLGGEAAGELLARARAAGVTTSVDVLAPGDPDMLAWIAGALPHTDYLLPNDEQVLGFTGAASLAEGAVALLEHGVGCVAVTQGAKGALVATTSGVVEVPAFPIEVVDTTGCGDAFSAGFLRGLSLGRTPAEAARLGCATAAQVAQGLGTDAGSYDLDVVTDLAALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJL8</accession>
    <name>A0A0Q8VJL8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23625</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57749">
        <property type="protein sequence ID" value="KRC57749"/>
        <property type="gene ID" value="ASE19_23625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1817677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="158" mass="17079" checksum="211C7062B1A45145" modified="2016-01-20" version="1">MGLFARRPPIDVGPGERILAASGEVGGTRDALYLPHRLPWEQVAAADWDQDERTLTVTEVGRFGEPRPVHVVQLDDAGRLLQLVRERVTASIALQRHVPVADRRSVRVLARQAPGHRGDLAWFVEYDAGLDPADPEVDAVVQAALASARADIGDAGPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKA2</accession>
    <name>A0A0Q8VKA2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14525</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896960.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53543">
        <property type="protein sequence ID" value="KRC53543"/>
        <property type="gene ID" value="ASE19_14525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="592264at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018511">
        <property type="entry name" value="Hemolysin-typ_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00330">
        <property type="entry name" value="HEMOLYSIN_CALCIUM"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360152" evidence="2">
        <location>
            <begin position="28"/>
            <end position="622"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="139"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="387"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="591"/>
            <end position="622"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="622" mass="59673" checksum="F526855002EAD48E" modified="2016-01-20" version="1">MTKFLPISLAAGSIVALGVAVAGPAQATPTCHGKAVTIDLNVTPGATGTPGDDVILGTPGNDVVGALGGADTVCTGLGDDAVNLGDGNDWASLGAGRDEANGADGADTVYGDQGANDLAGGAGPDLLVGGEEDDYLVGGTEGDVLRGAGGDDDVYGDEGNDTVDGDAGNDELSAGAGEDTVSAGSGNDTVYGDLGADTVSGGYGTDTYDVGNATSPVTVDLPNHAGSDALGNDTLTTLENIVGSEWDDFLYGDAGANVIRGGTGHDVLRGNGGDDRLLGDSDNDTLFGGAGNDVLAGSLGTNDLRGEDGDDVLVAGPAGDSLAGGAGTDTADYSASPSGVVLLLASTGQVQATGGSGSDYLVDAIENLVGTSSADVLVGNALTNTITGGGGDDQLAGQDGNDVLRGGAGDDQLSGGKGSDRIYGEDGDDSVSDGPMGPDSGNLVDGGNGDDHLQGGTSADTIKGGAGSDSILGGLGNDVIDGAAGNDALRGGDGNDALVGGAGDDLDGGAGTDTASYAAATKAVRVNLSLLGVQTTGGAGVDALARVEGLRGSRYADALTGTPAANSLIGGPGDDRLRGLGGSDRLFGDAGRDTLTGGTGSDRCAGGSGVDVASSCETRSSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL43</accession>
    <name>A0A0Q8VL43_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH lysR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05605</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894152.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54929">
        <property type="protein sequence ID" value="KRC54929"/>
        <property type="gene ID" value="ASE19_05605"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="290" mass="29901" checksum="FC2B0A3F9A5C0511" modified="2016-01-20" version="1">MNIQQLRYVVATAEHGSMTAAAAAVPVAQPALSRAVRQLERELGTTLFARSGRGVALTADGETFVRGARRVLVSIDALRSAATATDPAAPLVIAASPTLQAAMAIPILAGLREHGVVVPTRLVGCVSSTEVVDLVATGRADLGICDSAVTTDLTLVDIGRAEVRLYSPAAVDLPDPVRIADLTGLPLVLPTAGTPRRAALDAFFAAQGAVPEVAVETDERNAWLAAVTHGLASCIWHSVDRSPAPLPGVVARSFDPPMHRDLAAVHRAGSGSPALVPLLDVLRQVGALVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL99</accession>
    <name>A0A0Q8VL99_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ESAT-6-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05790</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the WXG100 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894116.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54960">
        <property type="protein sequence ID" value="KRC54960"/>
        <property type="gene ID" value="ASE19_05790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1938082at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036689">
        <property type="entry name" value="ESAT-6-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010310">
        <property type="entry name" value="T7SS_ESAT-6-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06013">
        <property type="entry name" value="WXG100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140453">
        <property type="entry name" value="SSF140453"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03930">
        <property type="entry name" value="WXG100_ESAT6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU362001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="98" mass="10501" checksum="D61911B1564CC6A8" modified="2016-01-20" version="1">MSNINVTYDDIRNVAAHLRQGRDDMTNKLNELGAMVDNLVSSGFVTDQASGAYNDQFDQFQAGTKTAIDALEGLSSFLDQAAQALQDTDTGLANSIKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLA0</accession>
    <name>A0A0Q8VLA0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HtaA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05910</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894097.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54977">
        <property type="protein sequence ID" value="KRC54977"/>
        <property type="gene ID" value="ASE19_05910"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007331">
        <property type="entry name" value="Htaa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04213">
        <property type="entry name" value="HtaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360179" description="HtaA domain-containing protein" evidence="1">
        <location>
            <begin position="30"/>
            <end position="759"/>
        </location>
    </feature>
    <feature type="domain" description="HtaA" evidence="2">
        <location>
            <begin position="135"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="759" mass="75961" checksum="D5A7023D6BD20462" modified="2016-01-20" version="1">MNPVRRSVAGLAAAALTATGLSVLSVATAPSAHATAVQVDDATLRWGINTEVNSASFAPGTWNLMSAGRIGNPGAGGKTLTSGDDGATWSNGASAGWANQSGNVTVEDLQAGGGYAPTTFLGTRQNSAGVNGTTGNGINAETQLVFRHGTGTVDADANTASVQWDGDATVLFYSGMTFFHLADPELTVAADGTGTLTATVDGYAASMADPTQWNDLADEEVTLATLTGVDVDELGLTTTPAYHEVEYDAPAGATAQSRTGVNWGAFPQDFVDFQQLTGGSSYWYSSGSSADVRKPATPLQVTFDATPPAPPAVEVTDTVLLPSGAHQVTVTGTGFDPALATGTRPPLSGKAGGTYVVFGKFPEAWKPSAGVASSLRKVSAQKWAVLAADMATIGGPDAGAIELAADGSFTTTIVVDKAAADTAAAAVATAVNYGIYTYPGSGAAQPLYETYTPVTFAAAEGTATVTVDTAPTQVADGAAKLTVADADGTAAAGSVSWALSNAADVEVASGDGALTGGAAQVVLPKQGAGDYTLTASYDGAENGNANITTAIATAPVAIAKATSTTAVQVTKVPTASATGAATITVDGAVDGVVPTGDVQAQLRSSTGAILATTSAQVDANGRATVTLPKRTAGTYTLVATYVGDGNVAGSSKTVSVTVAKVAATVRGTWTRKPTGARAGGLRVVVTAPGVKPTGLVTVTVRNARGKAVRTVRVRLNAAGAATAALPRLAKGRYTVSAAYAGNTQATARTWTLRFTTTRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMX0</accession>
    <name>A0A0Q8VMX0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molecular chaperone GroES</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03425</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892885.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56867">
        <property type="protein sequence ID" value="KRC56867"/>
        <property type="gene ID" value="ASE19_03425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="884088at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="15"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="324" mass="34254" checksum="B34A7881DF7CC3C9" modified="2016-01-20" version="1">MFAVYADSFASSADDPLTGLVLGERPDPVAPDGWTTVTVKAASLNHHDLWSLRGVGLKAEALPMILGCDAAGYDEDGNEVVVHAVVSDPAWTGDETFDPRRSLLSERHQGTLADQVIVPRRNVVPKPASMSFEEAACLPTAWLTAYRMLFTQGGLKAGDTVLVQGAGGGVATALITLARAGGLRVLATSRDEAKRAKALELGAHEVFESGARLPIKVDAVMETVGRATWSHSIRALRPGGKIVISGTTSGPNLDDAELTRIFFLQLSVIGSTMGTRDELASLVTMLDATGARPVIDRVLPMTEARDGFAAMASGDVFGKIVFTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN36</accession>
    <name>A0A0Q8VN36_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">NlpC/P60 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_02715</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C40 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57033">
        <property type="protein sequence ID" value="KRC57033"/>
        <property type="gene ID" value="ASE19_02715"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000064">
        <property type="entry name" value="NLP_P60_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00877">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51935">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NlpC/P60" evidence="3">
        <location>
            <begin position="192"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="14"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="143"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="307" mass="32956" checksum="9FA53A11DA0BC5D0" modified="2016-01-20" version="1">MSTPTSPANAEPDIEQVRDRVDKLLHQAEQASERYNDARLELKELNRDLDSLEADQTRQSDVLDGVRSDVRDAIIQRYQSGGLGPTGELLASDSNGFLDELATMSTVDGIQDSILTDYGTELEAYGIRRAQTQERRDDVRALKKTLSTEKKSADDKLAQAKSLLSRLEEEERNEILSRGGYRAPDAGSIPASPRAAAAIRYALAQVGDAYVYGAAGPSAFDCSGLTMMAWAQADVSLPHSSRAQMGSGTPVAKSDLQPGDLVFYYSPVSHVAMYIGSGMIVHAANPGAGVKVSSVDEMPYAGAVRPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNE4</accession>
    <name>A0A0Q8VNE4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22775</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892593.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58891">
        <property type="protein sequence ID" value="KRC58891"/>
        <property type="gene ID" value="ASE19_22775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1942201at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025329">
        <property type="entry name" value="DUF4235"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14019">
        <property type="entry name" value="DUF4235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360207" evidence="1">
        <location>
            <begin position="28"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="95" mass="9745" checksum="7F6484AA62CE6409" modified="2016-01-20" version="1">MAKDSSKVWSAFSLVAALGSAAVAKKALDGGWKAATGKQPPANPADPDVDVWEAVAWAAASGTFVALAKMLAQRKAAGYYLKSTGELPPGLRKDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPX5</accession>
    <name>A0A0Q8VPX5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Inosine-5-monophosphate dehydrogenase</fullName>
            <ecNumber evidence="3">1.1.1.205</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00175</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the IMPDH/GMPR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.205" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896844.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59496">
        <property type="protein sequence ID" value="KRC59496"/>
        <property type="gene ID" value="ASE19_00175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="532857at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003938">
        <property type="term" value="F:IMP dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006164">
        <property type="term" value="P:purine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00381">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005990">
        <property type="entry name" value="IMP_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005992">
        <property type="entry name" value="IMP_DH-rel2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001093">
        <property type="entry name" value="IMP_DH_GMPRt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11911">
        <property type="entry name" value="PTHR11911"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11911:SF85">
        <property type="entry name" value="PTHR11911:SF85"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00478">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01304">
        <property type="entry name" value="IMP_DH_rel_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IMPDH" evidence="2">
        <location>
            <begin position="15"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="368" mass="39235" checksum="CB93125E27DEF895" modified="2016-01-20" version="1">MSDIEIGRAKRARRAYSFDDIAIVPSRRTRDPEEVSVDWQIDAYRFSLPILAAPMDSVMSPATAVAIGQHGGLGVLNLEGLWTRYDDPEPLLEEVAGLQGVEATRRLQEIYDEPIKAELITERLRAVREAGVTVAGSLSPQRTKEFAKTVTDAGVDLFVIRGTTVSAEHVSSQAEPLNLKEFIYELDVPVIVGGCATHQAALHLMRTGAAGVLVGFGGGAAHTTRTVLGISVPMASAVADVAAARRDYLDESGGRYVHVIADGSIGTSGDLAKAIACGADAVMVGSPFARATDAPGRGFHWGAEAHHADLPRGQRVQFDQVGTIEEILFGPSRVADGTMNLIGALKRSMATTGYTELKEFQRVEVVSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ87</accession>
    <name>A0A0Q8VQ87_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23520</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893937.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57731">
        <property type="protein sequence ID" value="KRC57731"/>
        <property type="gene ID" value="ASE19_23520"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360274" evidence="1">
        <location>
            <begin position="27"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="345" mass="36528" checksum="48CD871B8AF1C7AC" modified="2016-01-20" version="1">MRRLLASLLACLALLGAVVTAAPAVADTGTPSYAPLDRPGPRLSVPAATLAGSLSCHGNPRTGPRPILLNPATSVTPVENYAWNWAKVFAKQGRYYCMVTMPFHTFGDIQVAGEYLVNAIRRMHATTGRRIAILGHSQGGMNPRWALRFWPDTRSKVAEMIGMAPSNHGTAVLAGCIPGLTRCVPAVWQQKAGSAFTKALNSRAETFAGIDYTNAYTMLDEVVVPPPSSALTTGSGRIANIPIQSVCALDPYEHVTTGTVSPAMYAIVMDALDHDGPASAARIDRKWCTRLFMPGIDPADVVGFAPILAALPNLVSTVLPGITFSGAPLLAKEPALRCYVYAAGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQB6</accession>
    <name>A0A0Q8VQB6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Transcriptional repressor NrdR</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">nrdR</name>
        <name evidence="10" type="ORF">ASE19_00990</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR-boxes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NrdR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896711.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59630">
        <property type="protein sequence ID" value="KRC59630"/>
        <property type="gene ID" value="ASE19_00990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1551627at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00440">
        <property type="entry name" value="NrdR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005144">
        <property type="entry name" value="ATP-cone_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003796">
        <property type="entry name" value="RNR_NrdR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30455">
        <property type="entry name" value="PTHR30455"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03477">
        <property type="entry name" value="ATP-cone"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00244">
        <property type="entry name" value="TIGR00244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51161">
        <property type="entry name" value="ATP_CONE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0678">Repressor</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 7" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="ATP-cone" evidence="9">
        <location>
            <begin position="48"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC59630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="17741" checksum="2B72016084BA2CCB" modified="2016-01-20" version="1">MHCPYCKHHDTKVLDSRVSEDGCSIRRRRVCQAASCEKRFTTVELMQLTVLKRSGATEPFTREKAVSGVRKACKGRPVGEDDLALLGQEVEDQLRLAGSPEIAAHEVGLAILTPLRRLDEVAYLRFASVYRGFDSAADFENEIALLRAERQLQGDPAPTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQL9</accession>
    <name>A0A0Q8VQL9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Holo-[acyl-carrier-protein] synthase</fullName>
            <shortName evidence="8">Holo-ACP synthase</shortName>
            <ecNumber evidence="8">2.7.8.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">4'-phosphopantetheinyl transferase AcpS</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">acpS</name>
        <name evidence="10" type="ORF">ASE19_00360</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>apo-[ACP] + CoA = adenosine 3',5'-bisphosphate + H(+) + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:12068"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9690"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58343"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="EC" id="2.7.8.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the P-Pant transferase superfamily. AcpS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.7" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896814.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59526">
        <property type="protein sequence ID" value="KRC59526"/>
        <property type="gene ID" value="ASE19_00360"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1893660at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008897">
        <property type="term" value="F:holo-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.470.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00101">
        <property type="entry name" value="AcpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008278">
        <property type="entry name" value="4-PPantetheinyl_Trfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037143">
        <property type="entry name" value="4-PPantetheinyl_Trfase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002582">
        <property type="entry name" value="ACPS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004568">
        <property type="entry name" value="Ppantetheine-prot_Trfase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01648">
        <property type="entry name" value="ACPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56214">
        <property type="entry name" value="SSF56214"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00516">
        <property type="entry name" value="acpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00556">
        <property type="entry name" value="pantethn_trn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="4 8" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="1 8" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6 8" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACPS" evidence="9">
        <location>
            <begin position="5"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01648"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC59526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="117" mass="12325" checksum="0022D2036298ACC3" modified="2016-01-20" version="1">MAVVGVGIDVCEIARFEESCRRTPALVEKLFVEAERGRSYASLAARFAAKEALAKALGAPGGMSWHDSEVVSEETGRPRFVMRGTVLAVADRLGVGSVHLSLTHDGGIASAVVVLET</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR11</accession>
    <name>A0A0Q8VR11_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_00600</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the phosphorylation of hydroxymethylpyrimidine phosphate (HMP-P) to HMP-PP, and of HMP to HMP-P.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine + ATP = 4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + ADP</text>
            <dbReference type="Rhea" id="RHEA:19893"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
            <dbReference type="ChEBI" id="CHEBI:58354"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.7"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>4-amino-5-hydroxymethyl-2-methylpyrimidine + ATP = 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23096"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16892"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58354"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.49"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Cofactor biosynthesis; thiamine diphosphate biosynthesis; 4-amino-2-methyl-5-diphosphomethylpyrimidine from 5-amino-1-(5-phospho-D-ribosyl)imidazole: step 3/3.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896773.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59567">
        <property type="protein sequence ID" value="KRC59567"/>
        <property type="gene ID" value="ASE19_00600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="461201at2"/>
    <dbReference type="UniPathway" id="UPA00060">
        <property type="reaction ID" value="UER00138"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008902">
        <property type="term" value="F:hydroxymethylpyrimidine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008972">
        <property type="term" value="F:phosphomethylpyrimidine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01169">
        <property type="entry name" value="HMPP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045029">
        <property type="entry name" value="HMP/HMP-P_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004399">
        <property type="entry name" value="HMP/HMP-P_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013749">
        <property type="entry name" value="PM/HMP-P_kinase-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20858">
        <property type="entry name" value="PTHR20858"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08543">
        <property type="entry name" value="Phos_pyr_kin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0784">Thiamine biosynthesis</keyword>
    <feature type="domain" description="Phos_pyr_kin" evidence="6">
        <location>
            <begin position="13"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="domain" description="Phos_pyr_kin" evidence="6">
        <location>
            <begin position="159"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000565"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="23631" checksum="8B3C3DB863BCEE2D" modified="2016-01-20" version="1">MNPPVVVTIAATDPGGGAGVAADLATFAALGVHGACVVTAVTVQDTTAVHAVHPLPTAVVLAQLDAVLADLPVAVIKTGMLATVETVSCLSTRLADVPGTRPRLVVDPVLRASTGATLATDEVVAAYREHLLPLADVVTPNEDEWVALGRPTGAHVLVTRGGDIPTTNDHGTGCTHSSALASYLARGEDLATAALRADAFVARQLHLSKDWTLGRGRGPVAHLHAPTEGVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRV5</accession>
    <name>A0A0Q8VRV5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Biotin carboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_01440</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59823">
        <property type="protein sequence ID" value="KRC59823"/>
        <property type="gene ID" value="ASE19_01440"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="3">
        <location>
            <begin position="132"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="466"/>
            <end position="491"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="491" mass="54498" checksum="F93D249D9BB86C46" modified="2016-01-20" version="1">MSEVRHFFRTNDVPIYFLGATPFNLLGLDRWVRNFTYVTYYDAWDGAHPRVFTPQHKPYVEFESGEHVNNWLLENAEVRAFIESRRAKGQRPKIAMVFFDEETEQICEELGYDLILPSAALRNHLDSKMVTTRLGNEVGVPSVPNVMVTVEDFESLMKAAAEAGLGDDLVVQTAYGDSGKTTFFIASEADWRKHRKDIAGNETKVMKRINNRPVAVEAVLTTSGTVVGPFMSELTGHSRLTPYRGGWCGNEMFPEVLSEDLRVRAGDLVRRLGDRLGKEGYRGFFEVDVLVDVDTDEVYLGELNPRISGASSITNVTAGAYADVPLFLFHLLEFLDVEFELDVDEINQRWQELAAVDLWSQMIIKETAPGVELIQSAAPTGAYTFDRAGTLVFQRAALDWHQLQDENEAFFLRIYGAGDYRWKGADLGVLVTKGRLQTGRPGKPAALTIRAKHLIDSVRAHYVGTPVVPPAQPAPDPAALKGSPGGALAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VS24</accession>
    <name>A0A0Q8VS24_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Diaminopimelate decarboxylase</fullName>
            <shortName evidence="3">DAP decarboxylase</shortName>
            <shortName evidence="3">DAPDC</shortName>
            <ecNumber evidence="3 4">4.1.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">lysA</name>
        <name evidence="7" type="ORF">ASE19_03310</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>H(+) + meso-2,6-diaminoheptanedioate = CO2 + L-lysine</text>
            <dbReference type="Rhea" id="RHEA:15101"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
            <dbReference type="EC" id="4.1.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 3 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; L-lysine from DL-2,6-diaminopimelate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the Orn/Lys/Arg decarboxylase class-II family. LysA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.20" evidence="3 4"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892867.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56850">
        <property type="protein sequence ID" value="KRC56850"/>
        <property type="gene ID" value="ASE19_03310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="861683at2"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00027"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008836">
        <property type="term" value="F:diaminopimelate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06828">
        <property type="entry name" value="PLPDE_III_DapDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02120">
        <property type="entry name" value="LysA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009006">
        <property type="entry name" value="Ala_racemase/Decarboxylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002986">
        <property type="entry name" value="DAP_deCOOHase_LysA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022643">
        <property type="entry name" value="De-COase2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022657">
        <property type="entry name" value="De-COase2_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022644">
        <property type="entry name" value="De-COase2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022653">
        <property type="entry name" value="De-COase2_pyr-phos_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000183">
        <property type="entry name" value="Orn/DAP/Arg_de-COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02784">
        <property type="entry name" value="Orn_Arg_deC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00278">
        <property type="entry name" value="Orn_DAP_Arg_deC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01181">
        <property type="entry name" value="DAPDCRBXLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01179">
        <property type="entry name" value="ODADCRBXLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50621">
        <property type="entry name" value="SSF50621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01048">
        <property type="entry name" value="lysA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00878">
        <property type="entry name" value="ODR_DC_2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00879">
        <property type="entry name" value="ODR_DC_2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3 4" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="3 4" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 3 4" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Orn_Arg_deC_N" evidence="6">
        <location>
            <begin position="68"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="domain" description="Orn_DAP_Arg_deC" evidence="5">
        <location>
            <begin position="323"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="3">
        <location>
            <begin position="315"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="318"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="359"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="363"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="391"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="420"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="462" mass="48681" checksum="7244DC05F9C42664" modified="2016-01-20" version="1">MSGRVPPGDYAGTSPHWLREPADVNALVPVLWSSTARKGDDGVLHIGGLAVPDLVADVNTPAYVLDEDDFRARARAFRDGFDGYDVFYAGKAFLSTAVARWVGEEGLCLDVCSNGELSVALRAGVDPARIGYHGNNKTAMELRRAVDAGVGRIIVDSFHEIERVADVAAQLGVTQGVMIRVTAGVEAHTHEFIATAHEDQKFGFSIASGAGLEAARRVLGHDSLALRGLHSHIGSQIFDTSGWEVAGRRVLGLHAEIAEELGHVMPELDLGGGFGIAYTTQDDPADPAVLAAQITKIVTGECAALGIDVPHLSIEPGRAIVGPSMCTVYTVGTVKEVTLDAGAVRTYVSVDGGMSDNIRPALYDADYSCTLASRASDATPVLARVVGKHCESGDIVVKDEFLPGDIAPGDLIAVPATGAYGRSMASNYNHALRPPVVAVKDGQARVIVRRETEDDLLATDLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUC2</accession>
    <name>A0A0Q8VUC2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_02485</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ribonuclease N1/T1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56711">
        <property type="protein sequence ID" value="KRC56711"/>
        <property type="gene ID" value="ASE19_02485"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000026">
        <property type="entry name" value="Gua-sp_ribonuclease_N1/T1/U2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016191">
        <property type="entry name" value="Ribonuclease/ribotoxin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00545">
        <property type="entry name" value="Ribonuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53933">
        <property type="entry name" value="SSF53933"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360384" evidence="5">
        <location>
            <begin position="32"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="28"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="17520" checksum="8481F96BDEE864D7" modified="2016-01-20" version="1">MSRRTTKAISTVVTVLLLVAVWWLQSRDDDASDTGRADDRSSVAASSTPTPAPSRTSEPQQADRDEDGLPYVDLADLPPEAAETVELIDAGGPFPYPGKDGSTFGNFEGVLPDRGRGYYAEYTVETPGLDHRGARRIIAGDEGELYWTEDHYASFERIRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VV60</accession>
    <name>A0A0Q8VV60_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01630</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896592.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59747">
        <property type="protein sequence ID" value="KRC59747"/>
        <property type="gene ID" value="ASE19_01630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="630753at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="646" mass="71843" checksum="FA12D3A20A77057F" modified="2016-01-20" version="1">MTQLINRVEDGSAPDRDRLAAALEDANIPTLLLVLAHLTGDDKWLSGKYRPQRGPVLDDNDSGSLPEDVQAEIRSAALRAILDAESGLIAERPLTPDQVTRMLGVALVEEIPEEYGELLAEELGVLSRDIDVPHPLPEGFEVLIIGAGLSGIALAIKLKGAGVPFTIIEKNHEIGGTWWENVYPGCGVDTPSHLYSFSFEPNGAWSRFFAKRPEVHQYLSRLVDSYGIREHIVFGQEVRSADFDTTTTTWRLEVVDGAGVGATYTAPVLATGVGMVNRPSIPDIAGADSFAGPIMHTAEWDPEVEYAGKTVAVIGTGASAMQLVPSIAGVAKKVVVFQRSKQWAVPHPNYHRDVPEGVLYLMDRLPLYTRWYRLRAFWNFSDRLHSSLRIDPEWTKPDLSINEANERHRVFLTKYIKDQLGDRTDLYDACIPEYPPYGKRPLLDNGWFRTVQRDDVELVTTDVQRIAPEGVVTADGELHEADILVWATGFKALQFLWPMEIRGVSGRSLAEQWGDHDARAYLGVTVPDFPNMFILNGPNTNAGHGGSAILACEFQVRYIMQGIARLASGEVSSLEVDEDVFWAYNKELDAELDKCIWSHPGMTTWYRNEAGRIVVSSPWTYLDSWGRMRELDVADYHETRVADASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWE0</accession>
    <name>A0A0Q8VWE0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22990</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892557.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58929">
        <property type="protein sequence ID" value="KRC58929"/>
        <property type="gene ID" value="ASE19_22990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="39"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="2">
        <location>
            <begin position="144"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="361" mass="38762" checksum="1F39DDB99D91873D" modified="2016-01-20" version="1">MKILGNKLYLSLIGIILVLIFAVAYVFSAVLDQPLTSRPVEVKVELAQTGGLFEGSAVTYRGIKVGKVRSIVPAESGVVATVAITSGTDIPKDSLAKVRSLSPVGEQYLDFQPAKTGGPFLASGDTVPATSTDLPKSLSSTVIAVNKVLRQIDDKKLRIVLSELSTGLKGTGEDLGTILDQGTAILETLDAVWPETDRVISNSGSVLSIATDNADSLRQLATSSKKFAAFLRSYDPELRRMLKRGPGQINEMVKLIKDANEVLPGFLATGVSFTDIFESYEPHLRALLQNYAPGLRSVLAKVQGGELRIQIIADKDPRCSYGTTRLDPKVNERRSLQKNGRCAASFRTLQRGAAHAPGPVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VY25</accession>
    <name>A0A0Q8VY25_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glutathione hydrolase proenzyme</fullName>
            <ecNumber evidence="4">2.3.2.2</ecNumber>
            <ecNumber evidence="4">3.4.19.13</ecNumber>
        </recommendedName>
        <component>
            <recommendedName>
                <fullName evidence="4">Glutathione hydrolase large chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="4">Glutathione hydrolase small chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_01065</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2 4">
            <text>an S-substituted glutathione + H2O = an S-substituted L-cysteinylglycine + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:59468"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:90779"/>
            <dbReference type="ChEBI" id="CHEBI:143103"/>
            <dbReference type="EC" id="3.4.19.13"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>an alpha-amino acid + an N-terminal (5-L-glutamyl)-[peptide] = 5-L-glutamyl amino acid + N-terminal L-alpha-aminoacyl-[peptide]</text>
            <dbReference type="Rhea" id="RHEA:23904"/>
            <dbReference type="Rhea" id="RHEA-COMP:9780"/>
            <dbReference type="Rhea" id="RHEA-COMP:9795"/>
            <dbReference type="ChEBI" id="CHEBI:77644"/>
            <dbReference type="ChEBI" id="CHEBI:78597"/>
            <dbReference type="ChEBI" id="CHEBI:78599"/>
            <dbReference type="ChEBI" id="CHEBI:78608"/>
            <dbReference type="EC" id="2.3.2.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>glutathione + H2O = L-cysteinylglycine + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:28807"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:61694"/>
            <dbReference type="EC" id="3.4.19.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Sulfur metabolism; glutathione metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">This enzyme consists of two polypeptide chains, which are synthesized in precursor form from a single polypeptide.</text>
    </comment>
    <comment type="PTM">
        <text evidence="4">Cleaved by autocatalysis into a large and a small subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the gamma-glutamyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.2" evidence="4"/>
    <dbReference type="EC" id="3.4.19.13" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896696.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59645">
        <property type="protein sequence ID" value="KRC59645"/>
        <property type="gene ID" value="ASE19_01065"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00204"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036374">
        <property type="term" value="F:glutathione hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102953">
        <property type="term" value="F:hypoglycin A gamma-glutamyl transpeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103068">
        <property type="term" value="F:leukotriene C4 gamma-glutamyl transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006750">
        <property type="term" value="P:glutathione biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006751">
        <property type="term" value="P:glutathione catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.246.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043138">
        <property type="entry name" value="GGT_lsub_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000101">
        <property type="entry name" value="GGT_peptidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043137">
        <property type="entry name" value="GGT_ssub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00066">
        <property type="entry name" value="g_glut_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="4" id="KW-0317">Glutathione biosynthesis</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="4 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0865">Zymogen</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360484" description="Glutathione hydrolase proenzyme" evidence="6">
        <location>
            <begin position="26"/>
            <end position="606"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU368036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="606" mass="62273" checksum="1BA3383F16603FF2" modified="2016-01-20" version="1">MRRTLTLVLVATTATALVSTAPAPAEPGHHPPPKAATATGHGGAVSSVDADATAVGLEVLRLGGNAVDAAVATAAALGVTEPYSAGIGGGGYFVHYDAATGEVSTIDGRETAPAAITPDAFIDPATGAPYPFTPDLVTSGVAVGVPGTAATWQTALDRWGSLSLADALRPAARLAQEGFRVDDTFALQTRENAERFRTFTSSRDLFLREGVPAVGSTFRNPDLARTYRQLGARGTGWLYDGSLGAEVARTVQGPPLSGATDLPVPVGSMTRADLARYRALVQAPTETRYRGYDVYGMAPSSSGGTTVGEALNILEHLDAPADDVAALHQYLEASALAFADRGRYVGDPAYVDVPVGSLLDDTFAAERACQVDPELAATKPVPPGDVASYDGICAAPALSASEDQDTENLSTTHLTTADRWGNVVAYTLTIEQTGGSGIVVPSRGFLLNNELTDFSTVYDPADPNRIQPGKRPRSSMSPTLVLADGRPVLALGSPGGSTIITTVLQVLLNRLDGGMTLADAVAAPRASQRNTANVTAEQPFLDRYGAALGGYGHRFAVAGPPGSSASEIGAVAAIELGPDGTLTAVAEPTRRGGGAAGVVRPARSYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYP2</accession>
    <name>A0A0Q8VYP2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00825</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896741.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59600">
        <property type="protein sequence ID" value="KRC59600"/>
        <property type="gene ID" value="ASE19_00825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2214907at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="242" mass="25835" checksum="88F1CD27524B5FD3" modified="2016-01-20" version="1">MALPVPALGAEVLRHDAEFRALDATFGELRDVVNRGVDALCALGIDLPRLPEGSLDELLVLPLTGDHRRIRQNAEAVRQVADALGDYARSTAGLAVAVDPRWSGAAAASYLVRVGRHAAVAQGCAELVRAVAPAFEEVAEGSERIAVEVEELVVELVEKARRLATRLLARVSGPLGWGVLAADVALHGIDAVTDLVDDVRRLVAIIERLTAMQGEVEAWVEEQRARLEALREVADVARGLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMM8</accession>
    <name>A0A0Q8UMM8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20635</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896025.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46254">
        <property type="protein sequence ID" value="KRC46254"/>
        <property type="gene ID" value="ASE19_20635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1919329at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="18"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="164" mass="18116" checksum="4B181BC0597597F6" modified="2016-01-20" version="1">MSSVASSPPALAWSVENCTLGRTMAILGERWTVVVLREVFLGVRRFDDIRRHAGIPRQVLSNRLAALVDHEILNRVPYQADGARTRHEYRLTAKGLELQPVLLAISAWGDRHLADPGGPPTTFVHRGDCEQPVHVEVHCAAGHRIDDPRQVATRPGPGVRPFEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN86</accession>
    <name>A0A0Q8UN86_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Enoyl-CoA hydratase 2</fullName>
            <ecNumber evidence="1">4.2.1.119</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Enoyl-CoA hydratase 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_21665</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a (3R)-3-hydroxyacyl-CoA = a (2E)-enoyl-CoA + H2O</text>
            <dbReference type="Rhea" id="RHEA:26526"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57319"/>
            <dbReference type="ChEBI" id="CHEBI:58856"/>
            <dbReference type="EC" id="4.2.1.119"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.119" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896206.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46436">
        <property type="protein sequence ID" value="KRC46436"/>
        <property type="gene ID" value="ASE19_21665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="744602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002539">
        <property type="entry name" value="MaoC-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011966">
        <property type="entry name" value="PaaN-DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01575">
        <property type="entry name" value="MaoC_dehydratas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02278">
        <property type="entry name" value="PaaN-DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="6">
        <location>
            <begin position="21"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="domain" description="MaoC-like" evidence="7">
        <location>
            <begin position="540"/>
            <end position="647"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00030115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="681" mass="71674" checksum="124D1BC582297743" modified="2016-01-20" version="1">MSALLESYVAGSWYAAPDEGEAVLDAITGEEVARVSARGLDYAAMVAHGRDVGGPALRALTFHERAGLIKALAKHLGQFKDEFYALSARTGATQRDSMVDIDGGIGTLFSYASKGSRELPNDTVVLDGSLERLSKGGTFVGQHIYTSRTGVAVQINAFNFPVWGMLEKLAPAFLAGAPSIVKPASQTAYLTEAVVRRIVESGILPEGSIQLISGSAGTLLDELSEQDSVAFTGSAHTAEILRNHPSVLRRGVHLGVEADSLNCSILGLDVTTDAPEFDLFVKGVVAEMTVKAGQKCTAIRRAIVPESLADAVIEAISARLSKVVVGNPAEETVRMGALASLGQRDEVRKAIEALRSSADIVFGDPDKVEVVGADAESGAFLSPVLLRARPDATEPHDVEPFGPVSTVLTYSTTAEAVELAARGKGSLAASLVTHDPEIARAVTLGLAPWHGRVLVLDRDDAAESTGHGSPLPVLVHGGPGRAGGGEELGGIRGVLHHMQRTAIQASPDMLTAITGRWTAGAQRIDDAVHPFRKSLAELRIGDSVVSDRRTVSLADIDHFAEFTGDTFYAHTDPEAAAASPLFGGIVAHGYLVVSLAAGLFVEPNPGPVLANFGVDNLRFLTPVKAEDSIQVTLTVKQVTPRTSADYGEVRWDAVVTNQDDAPVATYDVLTLVAKTWPATTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNA4</accession>
    <name>A0A0Q8UNA4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SCP2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21865</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896239.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46470">
        <property type="protein sequence ID" value="KRC46470"/>
        <property type="gene ID" value="ASE19_21865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1621299at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003033">
        <property type="entry name" value="SCP2_sterol-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02036">
        <property type="entry name" value="SCP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SCP2" evidence="1">
        <location>
            <begin position="39"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="137" mass="15143" checksum="5E6325FC381CE937" modified="2016-01-20" version="1">MSVKFFSQEWCDGATDAANASEPMLKGFKKASTFTNKMAFGVNGRDDLVTHVEWKEGRVVAWTGPQFDYDDLWLDIKADLDTWKDLAEGKAEAGKMLVMGKIKFAKGPMAAAIENSVALHHFLLAWGAAADHIDYDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNB0</accession>
    <name>A0A0Q8UNB0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GntR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21895</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896245.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46476">
        <property type="protein sequence ID" value="KRC46476"/>
        <property type="gene ID" value="ASE19_21895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1024978at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="2">
        <location>
            <begin position="3"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="469" mass="49613" checksum="6895EA5A1706A8EF" modified="2016-01-20" version="1">MNYDSAERIVTGLRAWIRDAPAGAQLPSSRALVAEYAASPVTVQKALRRLGAEGLVEARPGIGTFVRSVRPSRGADFGWQTAALGTPRARLTGVAGPLQDAPAGAMALHAGYPGPELLPERLVRTALVRAARGAAATARTPVAGLPELRAWFAAELADATPAHLSAVTAADVVVAPGSQSALSSIFRALVAPGQPLLVESPTYWGAIQAAQQAGVVPVPVPVGLDGPDPEDLDRAFRETGARALYAQANFANPTGVQWSPARAEEVLEVVRHHGAFLVDDDWAHDFGIDSDPRPVAALDDGGHVVYLRSLTKSVSPAVRVAAVIARGPARERVLGDRAAESMYVSGLLQQAAVEVVSDPGWRSHLRRLRVQLRERRGLLVDALAAHAPDLEVAVVPPGGLHLWARLPAGTDVDRLVRDCAAERVWVSTGDEWFPAEPSGPYLRLTYTGPEPARFPDAARVIARALAGQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNI3</accession>
    <name>A0A0Q8UNI3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">N-acyl-L-amino acid amidohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22140</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46517">
        <property type="protein sequence ID" value="KRC46517"/>
        <property type="gene ID" value="ASE19_22140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="796259at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017439">
        <property type="entry name" value="Amidohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11014">
        <property type="entry name" value="PTHR11014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005962">
        <property type="entry name" value="Pept_M20D_amidohydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01891">
        <property type="entry name" value="amidohydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="397" mass="42152" checksum="A7FB85BD43B28369" modified="2016-01-20" version="1">MTDTSDLLALVASVVDKYDDELVGFRRDLHRHPELSWQEHRTVDRVAERLDGTGWKLTRTPRSGLVADLGETGPRVALRADLDALPVADLTTDGWRSENEGVAHACGHDVHTTSLVGAALALAELHHQGLLGGRVRLLFQPAEEVMPGGAKHLISHGALEGVDRIFALHCDPSVDVGAVGVRSGPITSAADRIDVRLEGNGGHTSRPHLTGDLTFALAKVASELPAVLSRRMDPRAGVSVVWGMLRAGLAANVIPDSGIASGTVRILEAQAWASCEPVVREAVLDIVRPYGVIATVDYLQGVPPVVNDALCTAMVSAAADELLGPHHRTEVEQSLGGEDFGWYLEEVPGAMFRLGTRTPGGPRFDLHQGDFEVDEQAPGFGARMLAGVAVLAIAAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNR2</accession>
    <name>A0A0Q8UNR2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AMP-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21730</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056918004.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46447">
        <property type="protein sequence ID" value="KRC46447"/>
        <property type="gene ID" value="ASE19_21730"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="2"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="87" mass="9738" checksum="57C42CB293728FC6" modified="2016-01-20" version="1" fragment="single">LYEGTPDSPEPGRWWKIIQDYKVSLFYTAPTAIRSFMKQGHEIPDSYDMTSLRILGSVGEPINPEAYVWYRTVIGGSGTGGRETPVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNY0</accession>
    <name>A0A0Q8UNY0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Succinate dehydrogenase</fullName>
            <ecNumber evidence="7">1.3.5.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">sdhA</name>
        <name evidence="7" type="ORF">ASE19_22200</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.5.1" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896295.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46527">
        <property type="protein sequence ID" value="KRC46527"/>
        <property type="gene ID" value="ASE19_22200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="153138at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033765">
        <property type="term" value="F:steroid dehydrogenase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008177">
        <property type="term" value="F:succinate dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008202">
        <property type="term" value="P:steroid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037099">
        <property type="entry name" value="Fum_R/Succ_DH_flav-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015939">
        <property type="entry name" value="Fum_Rdtase/Succ_DH_flav-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030664">
        <property type="entry name" value="SdhA/FrdA/AprA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011280">
        <property type="entry name" value="Succ_DH/Fum_Rdt_flav_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11632">
        <property type="entry name" value="PTHR11632"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11632:SF53">
        <property type="entry name" value="PTHR11632:SF53"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02910">
        <property type="entry name" value="Succ_DH_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46977">
        <property type="entry name" value="SSF46977"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56425">
        <property type="entry name" value="SSF56425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01811">
        <property type="entry name" value="sdhA_Bsu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_2" evidence="5">
        <location>
            <begin position="68"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="domain" description="Succ_DH_flav_C" evidence="6">
        <location>
            <begin position="549"/>
            <end position="686"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="687" mass="76300" checksum="A9597E4AF17AA974" modified="2016-01-20" version="1">MAAGTHYLPGLTPTNEPSVQKSDDAAGFYELGEKLVDDKAPTGPIEERWTTRKFENRLVNPANRRKLDIIIVGTGLAGGAAAATLGEAGYNVKSFCYQDSPRRAHSIAAQGGINAAKNYKEDGDSTYRLFYDTVKGGDYRSRESNVYRLASESANIIDQCVAQGVPFARDYGGLLDNRSFGGVQVSRTFYARGQTGQQLLLGAYQAMERQVAAGTVEAFTRHEMLELIVVDGKARGIVARDMVTGDIETHLADVVVLASGGYGNVFYLSTNAMGSNVTAAWRAHRKGAYMANPCYTQIHPTCIPVTGAHQSKLTLMSESLRNDGRIWVPKRVEDCEKDPRQIAEDDRDYFLERIYPSFGNLVPRDIASRAAKYMCDEGRGVGPEIEELQPDGTTKKVRRGVYLDFKDAIERLGKHGVEEKYDNLLDMYERITGENPYEVPMRIYPAVHYVMGGLWVNYELQSNIEGLFVTGEANFSDHGANRLGASALMQGLADGYFVLPNTIREYLADGPFEKVDENDPAVVEALTSVKERVAKFLSIQGTRSVESYHKELGAIMWEYCGMERTEEGLKLAIQKIRDLRADFWTNVKVLGASDNINQDLEKAGRVADFLELGELMCIDALNRRESCGGHFRAESQTEDGEALRHDDEFAYVAAWEWGGDSNDGGQPVLHKEDLIYTAIEMKQRSYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUY2</accession>
    <name>A0A0Q8UUY2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">3-dehydroquinate synthase</fullName>
            <shortName evidence="8">DHQS</shortName>
            <ecNumber evidence="8">4.2.3.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">aroB</name>
        <name evidence="10" type="ORF">ASE19_19230</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate = 3-dehydroquinate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21968"/>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58394"/>
            <dbReference type="EC" id="4.2.3.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <cofactor evidence="8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="8">Binds 1 divalent metal cation per subunit. Can use either Co(2+) or Zn(2+).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="8">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 2/7.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.4" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893424.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49022">
        <property type="protein sequence ID" value="KRC49022"/>
        <property type="gene ID" value="ASE19_19230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1677032at2"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003856">
        <property type="term" value="F:3-dehydroquinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00110">
        <property type="entry name" value="DHQ_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016037">
        <property type="entry name" value="DHQ_synth_AroB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030963">
        <property type="entry name" value="DHQ_synth_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030960">
        <property type="entry name" value="DHQS/DOIS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01761">
        <property type="entry name" value="DHQ_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001455">
        <property type="entry name" value="DHQ_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01357">
        <property type="entry name" value="aroB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0170">Cobalt</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8" id="KW-0520">NAD</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="DHQ_synthase" evidence="9">
        <location>
            <begin position="65"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="69"/>
            <end position="74"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="103"/>
            <end position="107"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="127"/>
            <end position="128"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="140"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="149"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="182"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="251"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="267"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC49022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="364" mass="37873" checksum="CC2A1195F98EA83B" modified="2016-01-20" version="1">MSTPSVLRVATASPYDVVVGHGVLDRLRGLLPAGVQRVAIICPESLEDLLDPFADLLDGLDVVVLQVPDGEEAKNWEVAAACWEALGEDGFTRSDAVVTLGGGATTDLGGFVAATWLRGVAVVHVPTTLLAMVDAAVGGKTGINTPAGKNLVGSFHEPAGVLCDLALLATLPRAELVAGLGEVVKCGFIADPRILELVESTEPEALTADSPVLRELVERSVAVKAAVVAGDLKERGGVDGHPGREALNYGHTLAHAIEKATDYSIRHGEAVAIGCVYVAELAARAGGLAPELVARHRAVLERVGLPTSWSGADFDTLLATMRVDKKSRGNQLRFVVLEDLAKPVVLAGPSEDDLRAAYAALQGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUY3</accession>
    <name>A0A0Q8UUY3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_19165</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893415.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49013">
        <property type="protein sequence ID" value="KRC49013"/>
        <property type="gene ID" value="ASE19_19165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1479518at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045621">
        <property type="entry name" value="BPD_transp_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19300">
        <property type="entry name" value="BPD_transp_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="9"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="117"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="155"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="200"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="259"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="305"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="118"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC49013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="338" mass="36738" checksum="9B3EFCFCC96CF32F" modified="2016-01-20" version="1">MFAFLVRRVFAGVIMLIVMSLVVFGLFFASPVDVAAFACGKNCSPAIKEQTRKALGYDDPTLVQWKDFMVGIAKGREYPNDPELREAAPQLVASCDAPCFGYSQVNSRTVNEEISKAFPITVSLAVVALIIWLTVGIALGCIAALTKGSFLDRGLVGISLVFYAFPTFFIGLLLLKFVSIKWGLWDIPEYTSIADGGVGAWLYNLILPSVTLAVVFMAAYVRMTRAFVLEAMSEDYIRTAHSKGLSRGRVLRKHTLRAALTPLVTMAGLDFAGLLGGAIITEYVFNFNGLGKLAVDANQNYDLPTIIGLVVLAASFVILMNIIVDVLYAVIDPRVRLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV08</accession>
    <name>A0A0Q8UV08_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alkane 1-monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19400</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893456.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49054">
        <property type="protein sequence ID" value="KRC49054"/>
        <property type="gene ID" value="ASE19_19400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1427241at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="8"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="338" mass="37047" checksum="B8A82299A63ED3EB" modified="2016-01-20" version="1">MKKIGFLSFGHWTPSPHSQTRSAADTLLQSIDLAVAAEELGADGAYFRVHHFARQLASPFPLLAAIGARTSRIEIGTGVIDMRYENPLYMVEDASAADLISGGRLQLGISRGSPEQVIDGWRYFGYAPAEGETEADMARRHTEVFLEALRGEGFAEPNPRPMFANPPGLLRLEPHSEGLRERIWWGAASNGTARWAAELGMNLMSSTLKEDEGGQPFHVQQAEQIRVFRDAWGAAGHTGEPRVSVSRSIFPLVSDEDRAYFGGRPDGDQVGQIDNMRAIFGRSYAAEPDALIEQLREDEAIAEADTLLLTVPNQLGVDYNAHVLESILTHVAPGLGWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV19</accession>
    <name>A0A0Q8UV19_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18770</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893350.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48948">
        <property type="protein sequence ID" value="KRC48948"/>
        <property type="gene ID" value="ASE19_18770"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="57"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="19402" checksum="1FE5BE1A9BB62C49" modified="2016-01-20" version="1">MLTDDDLTRQLEAAFREASADLRYDRRVPTARRTPSTGWLAVPAVATVAALAVAGGADESPAPAPEAGHGPTATPGPRWTTDTVTVAGYTFTYRHAPGERLVDDLHADLSPARPPDDATAIAGAPAEVDAWVGTDPDSGQHALWVEAPTRNGGRLFALLSPSWTEDQLKDLFLNGEPRTVPATG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV60</accession>
    <name>A0A0Q8UV60_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fe-S cluster assembly protein HesB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893821.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49093">
        <property type="protein sequence ID" value="KRC49093"/>
        <property type="gene ID" value="ASE19_17620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1701968at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017658">
        <property type="entry name" value="CHP03252_HhH-GPD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03252">
        <property type="entry name" value="TIGR03252"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ENDO3c" evidence="1">
        <location>
            <begin position="25"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="188" mass="20183" checksum="0ED25A7F009E6D69" modified="2016-01-20" version="1">MAIQIAQDPAADKVLTDDPFALLAGMMLDQQFPMERAFAGPAKVLERFGTLQPAAIAGADPEKFSELCRTPPAIHRYGGAMAARMQELAQAVVDEYDGDASRIWTEAASGADLLKRIQALPGFGKQKAQIFTALVAKQLGVRPAGWEKAAGDYALDGYRSVADVTDADSLLKVREYKQAKKAEAKAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVP4</accession>
    <name>A0A0Q8UVP4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17395</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893814.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49087">
        <property type="protein sequence ID" value="KRC49087"/>
        <property type="gene ID" value="ASE19_17395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1746333at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="140" mass="15979" checksum="1502716F276FD467" modified="2016-01-20" version="1">MAIDEEHTRPDGTDDLTVEALGNISEALEAVEIARGHLYTFHRLSGTADLTLGKGVDQLREAGHTELADRIERELVGRNVLQGRWTFQIMEEYDDGYYADFKRLEGAAREELVEGKRHLYEAEMKEDRRTHGRAGHERTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXP2</accession>
    <name>A0A0Q8UXP2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15590</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893511.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50042">
        <property type="protein sequence ID" value="KRC50042"/>
        <property type="gene ID" value="ASE19_15590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="292" mass="30359" checksum="C4A3BA5B92359611" modified="2016-01-20" version="1">MSKLLEGRVAIVTGAGRGIGRAHALELARHGAKVVVNDFGVSNNGEKTDSPAHDVVAEIEAMGGEAVVNGADVADFEQAAALVQQAIDTFGGLDILVNNAGFVRDRMLVNATEDEFDAVVRVHLKGHFATLRHAAAYWRAESKEGRQRAARVINTTSGAGLQGSIGQVVYSAAKGGIATMTLVAAAELGRVGVTVNAIAPVAKTRMTEGAFDTSAMALPEDNSPIVAWLASEEAGDVTGRVIEVDGSVITVENAWSHGPSRDAGARWEAEKVGPALRELFAEAPAPEPVYGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXY1</accession>
    <name>A0A0Q8UXY1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15925</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50104">
        <property type="protein sequence ID" value="KRC50104"/>
        <property type="gene ID" value="ASE19_15925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2063146at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="114" mass="11931" checksum="A0C3AA8DCFB01960" modified="2016-01-20" version="1">MILAMAGVVAVLLVVDLVRDRSAQDSHYIGLAVLQVGVLAQLVGGSVALARTDRDVEGAVFVSYLVTVALLPVVGAFFSLAERSRVGTTILLLAVATVAGLELRLWDIWGGTRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYE5</accession>
    <name>A0A0Q8UYE5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Stress-response A/B barrel domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16070</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893595.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50127">
        <property type="protein sequence ID" value="KRC50127"/>
        <property type="gene ID" value="ASE19_16070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1577835at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013097">
        <property type="entry name" value="Dabb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07876">
        <property type="entry name" value="Dabb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00886">
        <property type="entry name" value="Dabb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51502">
        <property type="entry name" value="S_R_A_B_BARREL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Stress-response A/B barrel" evidence="1">
        <location>
            <begin position="231"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="345" mass="36881" checksum="18287FFAE482464B" modified="2016-01-20" version="1">MNASITVRDHYVVAADRLAELRTLVAGYADGAAARGLVLTEQVAAPPLALADQPVTLDVRWTLADVGAFWTARAQSHDPAVGAFWAAVDAIVTARERTYGMAPETVPPSPEDLGAHAATPAVWRETAQLYLPPGAGEPEVAALLADLARAADLPGVEQSVASPNFVPAYGAGHVTWDLVYPDRATAAVARKSTLWTDDLLPALERHCASRSALGLDTVGAGAREPDLAGGVKRTALFRLLPGVDAAAAEAFARDTLAMPAHIGAIRNWRLSRAVPLDWDATAGEPWTFVWEQEYADLDGLVVDYMVHPHHWAHVDRWFDVESGAQAVDPALCHAFAALERAFITR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYH2</accession>
    <name>A0A0Q8UYH2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Alanine racemase</fullName>
            <ecNumber evidence="3">5.1.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_20240</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>L-alanine = D-alanine</text>
            <dbReference type="Rhea" id="RHEA:20249"/>
            <dbReference type="ChEBI" id="CHEBI:57416"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="EC" id="5.1.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 3 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the alanine racemase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.1" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895967.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46194">
        <property type="protein sequence ID" value="KRC46194"/>
        <property type="gene ID" value="ASE19_20240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="859043at2"/>
    <dbReference type="UniPathway" id="UPA00042">
        <property type="reaction ID" value="UER00497"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008784">
        <property type="term" value="F:alanine racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030632">
        <property type="term" value="P:D-alanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01201">
        <property type="entry name" value="Ala_racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000821">
        <property type="entry name" value="Ala_racemase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009006">
        <property type="entry name" value="Ala_racemase/Decarboxylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011079">
        <property type="entry name" value="Ala_racemase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00842">
        <property type="entry name" value="Ala_racemase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00992">
        <property type="entry name" value="ALARACEMASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01005">
        <property type="entry name" value="Ala_racemase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50621">
        <property type="entry name" value="SSF50621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00492">
        <property type="entry name" value="alr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ala_racemase_C" evidence="6">
        <location>
            <begin position="246"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for D-alanine" evidence="3">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for L-alanine" evidence="3">
        <location>
            <position position="267"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="315"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3 4">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR600821-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR600821-52"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="382" mass="39308" checksum="0771AE4472DECE9E" modified="2016-01-20" version="1">MSAIALRPRRTEETAPSLTLDLAAVARNTELIAGRTAGELMAVVKADGFGHGAADVARTALAHGATRLGVTSLAEAFALRDAGLVAPVLSWLNGADADFAGAAARDVEVAVPGVPHLAAVAAAPGRQRVHLHVDAGMARDGAEPAAWPALCRAARRAEERGQLEVVGVMGHLGCADDPDDDCNALGRHRFAWAVEVARSAGLCPRDRHLAATAATLTDPRSHHTMSRVGAGLVGIDPSGRTTLEPAMTLAAPLLQVRRVRAGTPVGYGHTHRTTRPTYLGLVGLGYADGLPRAASGRAQVSVRGARRPVVGRISMDQLVVDLGSTGAEAGDLVTVFGPGAGGAPTAAEWAEWAGTIEHEVVTGIGARVARRTVAASHLRSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZG7</accession>
    <name>A0A0Q8UZG7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_19375</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893451.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49049">
        <property type="protein sequence ID" value="KRC49049"/>
        <property type="gene ID" value="ASE19_19375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1465483at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011096">
        <property type="entry name" value="FTP_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023612">
        <property type="entry name" value="Peptidase_M4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027268">
        <property type="entry name" value="Peptidase_M4/M1_CTD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001570">
        <property type="entry name" value="Peptidase_M4_C_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013856">
        <property type="entry name" value="Peptidase_M4_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07504">
        <property type="entry name" value="FTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01447">
        <property type="entry name" value="Peptidase_M4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02868">
        <property type="entry name" value="Peptidase_M4_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00730">
        <property type="entry name" value="THERMOLYSIN"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359560" evidence="9">
        <location>
            <begin position="27"/>
            <end position="1205"/>
        </location>
    </feature>
    <feature type="domain" description="FTP" evidence="12">
        <location>
            <begin position="112"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M4" evidence="10">
        <location>
            <begin position="274"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M4_C" evidence="11">
        <location>
            <begin position="365"/>
            <end position="515"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="537"/>
            <end position="582"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="355"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="446"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009388"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR623612-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF07504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC49049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1205" mass="125816" checksum="9F57C4DDBA2E2E1D" modified="2016-01-20" version="1">MRRVLASACAALAATAALAVVPPSYAARPDDGEAALQADADGPLRIRREHGVATFVGKPAGTDLDNPGVGRRTPASVAARAHLDRYGEAIGADRSGTRLVERRTVGKPGEGQLVRYQQQVGGVPVLGGEVVVGLGADHELDSLNAHLSDATGVPAPTLAEDDARAVAAGTVRRAVGRRVQVEDGGRWVLDPEAVGLDATPERGGVRGVWRFEVRAGSAVRRLVLVDDRTGDVLLDVDLVEDIDRTVCDRANVWGQEVPCTTDAVRTETSGPSAVADVEAAFAHAGATSTFYQQVGFFDLTSLIGYPTASGLKLSSTVRFCPNSGQNCPYANAFWNGQGMFYGQGYAAADDVVGHEMTHGVIERSSGLLYWDQPGAINESLADIIGEIVDHRNVGPGDTATDWRLGEDLPNGAIRDLANPPAKGQPDRMTSALWDADLRYEDGGGVHRNSGVGNKAFHLISQGGTFNGQTITGIDAGDPSLTRSGLLWVRTMAGLTAFTEYADLAVVLQQTCAQLVDLNWFTAADCTAVNKAILATELTSPPTSDPEKDAPRGCPDGRFPRTLFDSETGSDPTAKLAPAPGWGRTPATPVNAAYGVNAYSGDTAWVAEDPPGAVSRSLRSAAPIAVPQGQPSYLAFRQWYLFDFGIDPANGTGYWYDGGTLEMTSAADDTSWVSLSNYPWDNGPTRVLQPPNETRKAFAGSSRGWIGSRVEITGFGGQSVRPTFTVRTDESYGGPGWYLDDILVYTCDLGLAATVAPTLPATTPRVGVTVSVTAPTWNLPDAVTSYQWRRDGAPVAGATQPSYTPVAGDVGTALSVVVTGTSGGQTVPVVLAAPAPVEAAPVPLQATMPPSLPATAPRVGTAFTVTAPVWNQAGVTTTYQWRRDGQPIVGAMSASYTPVADDLGTTIGVIATGTRGEQVVELAPVTAIAAVQAAPPPLQATTQPSLPATTPQVGTPITVTAPVWNRPDVVTTYQWLRGDQPIAGATQPSYSPVPADVGTRLSVVATGTLGDETASVVAGPMTDVLPVLAVVTVPSLAAGAPRVGRAIAVTAPTWNLAGTIPTYQWRRNGQPLAGRTQATYTPVAADVGTRLSVVVTGTNGAQSKAVTAAASADTALGILTAPRTVRTTGTPSVGRRLTAARGTWAPTGITFTYRWLRDGKVIAGATRASFVLRTVDRGHRVAVRITARKSGYATVVRTSAAVLVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1U9</accession>
    <name>A0A0Q8V1U9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15230</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51435">
        <property type="protein sequence ID" value="KRC51435"/>
        <property type="gene ID" value="ASE19_15230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="52"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="71"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="94" mass="9278" checksum="46B7697EB1F256E7" modified="2016-01-20" version="1">MTASSSSTGSRVRGGVHIVRRSVSGVSRFSSGRECSSAIFAIATLARSRRRAATGSLSAHARGAGGPSPCETRVGSSSSGISAASLTAASHSLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2H2</accession>
    <name>A0A0Q8V2H2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17925</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893202.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48800">
        <property type="protein sequence ID" value="KRC48800"/>
        <property type="gene ID" value="ASE19_17925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1846332at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="233" mass="26289" checksum="494565CC13CC0D5D" modified="2016-01-20" version="1">MARPRGLESYPRPGVTVDLALLTVEGASDTNPELKLLVQDRADPEGRALPGGFIRERWTVAQTVEDVLRRKVGIEPRDDIHPRLLRLFDDPERDDRTWAISAGHSVSLHESDLAAATGDLVPVSTTGNLIGEDPLLFDHDEIVATAVHELRDRYEIRYRYVDIHPDPDGFLPEPFTLHQLRRVHEAVVGDELHKDNFNRRMKPMLEPVLRGGEPVLATQLRGRPAALYRKAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4A0</accession>
    <name>A0A0Q8V4A0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">Pyruvate, phosphate dikinase</fullName>
            <ecNumber evidence="4 7">2.7.9.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_16990</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + phosphate + pyruvate = AMP + diphosphate + H(+) + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:10756"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.9.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 7 10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the PEP-utilizing enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.9.1" evidence="4 7"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50291">
        <property type="protein sequence ID" value="KRC50291"/>
        <property type="gene ID" value="ASE19_16990"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050242">
        <property type="term" value="F:pyruvate, phosphate dikinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006090">
        <property type="term" value="P:pyruvate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008279">
        <property type="entry name" value="PEP-util_enz_mobile_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018274">
        <property type="entry name" value="PEP_util_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000121">
        <property type="entry name" value="PEP_util_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036637">
        <property type="entry name" value="Phosphohistidine_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002192">
        <property type="entry name" value="PPDK_AMP/ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010121">
        <property type="entry name" value="Pyruvate_phosphate_dikinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22931">
        <property type="entry name" value="PTHR22931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00391">
        <property type="entry name" value="PEP-utilizers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02896">
        <property type="entry name" value="PEP-utilizers_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01326">
        <property type="entry name" value="PPDK_N"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000853">
        <property type="entry name" value="PPDK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52009">
        <property type="entry name" value="SSF52009"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01828">
        <property type="entry name" value="pyru_phos_dikin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00370">
        <property type="entry name" value="PEP_ENZYMES_PHOS_SITE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="14" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PPDK_N" evidence="12">
        <location>
            <begin position="17"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="domain" description="PPDK_N" evidence="12">
        <location>
            <begin position="60"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="domain" description="PPDK_N" evidence="12">
        <location>
            <begin position="294"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilizers" evidence="11">
        <location>
            <begin position="418"/>
            <end position="500"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilizers_C" evidence="13">
        <location>
            <begin position="531"/>
            <end position="880"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-phosphohistidine intermediate" evidence="8">
        <location>
            <position position="451"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8">
        <location>
            <position position="843"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="571"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="625"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 10">
        <location>
            <position position="756"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="777"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="778"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="779"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 10">
        <location>
            <position position="780"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR000853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000853-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000853-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000853-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC50291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="905" mass="96470" checksum="6C43B500196A1747" modified="2016-01-20" version="1">MTSYVHSFEAPGTPDRDLLGGKGAGLARMVQLGLPVPPGFTITTAACRHVLATGERPPGMSGDVARHLAQVEEETGRRLGGAERPLLLAVRSGAARSMPGMMDTVLDVGLNDTTVHALARSTGDERFAWDCYRRLVQMFGETVLGVPSARFAEVRDAVVAEHAASDPGALDVTGLQLLVERGNALCEEVGGRALPQDPHEQLDLAIDAVFSSWHGERARLYRRRFAIPDDLGTAVNVQAMVFGNLGTASGSGVAFTRDPATGELGDYGEYLPDAQGEDVVSGARTALPLARLREIDEASHRRLRSIMGTLERHHRDLCDIEFTIEDGRLWILQTRVGQRSPAAAFRIATDLVDEGMITEDEALVRVSGEQLTQLMFPQLDGTSAGPAVATGLAASPGAAAGRVVLDTATAITLAARGEDLVLFRPETRAEDLPGMVASRAVVTARGGRTSHAAVVARGMGLPAVCGVEGLEIDLVARRVLLDGRPLFAEGDLVSVDGGTGRIHRGRHRTVTSEVTRSLQGEEVASPVAAAVGRLLTHADRVRRLGIRANAETGPDVARALRFGAEGVGLCRTEHMFLGDRRTYVERVLLGDDAERSAALRELTDLQRESLRVVLAAAGGRPVTVRLLDAPVHEFLPDLTELAVRAAVERERGRPDAALEKRCAAVRLHRDENPMTGLRGVRLSILRPELVVAQAGAAFEAAADLRDRGCPVDLELMVPLVSDAEEIATVARSVRAAADDVAVRRGRVAYRLGAMVETPRAAVTAARIAEEADFLSLGTNDLTQLTWGLSRDDAERSFLRHYLDEGVLTTSPFVTIDEAGVGRLVVEALHEARATRSAMPIGVCGEHAGDPASIAFFADAGVSYLSCSPFRVPVARLEAGRAALLGEGCPTERFDEIDAPLLVTAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V579</accession>
    <name>A0A0Q8V579_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18280</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48866">
        <property type="protein sequence ID" value="KRC48866"/>
        <property type="gene ID" value="ASE19_18280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="99072at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013431">
        <property type="entry name" value="Delta_60_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022409">
        <property type="entry name" value="PKD/Chitinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000601">
        <property type="entry name" value="PKD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035986">
        <property type="entry name" value="PKD_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17164">
        <property type="entry name" value="DUF5122"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00089">
        <property type="entry name" value="PKD"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49299">
        <property type="entry name" value="SSF49299"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50093">
        <property type="entry name" value="PKD"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKD" evidence="2">
        <location>
            <begin position="187"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="domain" description="PKD" evidence="2">
        <location>
            <begin position="487"/>
            <end position="559"/>
        </location>
    </feature>
    <feature type="domain" description="PKD" evidence="2">
        <location>
            <begin position="1590"/>
            <end position="1677"/>
        </location>
    </feature>
    <feature type="domain" description="PKD" evidence="2">
        <location>
            <begin position="1690"/>
            <end position="1762"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="133"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="562"/>
            <end position="591"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1762" mass="182081" checksum="F5937239860A6CAC" modified="2016-01-20" version="1">MQAGDVLLLSLTTNSTTSTITEPDAGWTSIAARDGDGIRARLWRRTATATDANANVTVTTSAAAKSVIAVSAYRSTGTVPAVLALAGGADTAGTAHVAPAITVAGPGSWLVSMWAEKSSTDTSWTLPANVTARGSGAGTGSGKISATWGDSAGAVPTGSTAPRTATTSTSVSRSATFSVVIGPGDLPDNPPHAEFTASCSGLVCSFDASGSSDPDGDTLTHTWTFGDGSSGTGQAPQHTYAGAGPRTVTLTVDDGTRQDVTTRQVSPDIAVTAGQITFVGAASTAGNRPGHSVTIPSSIEPGDRLVLFLVTNSTSSTLDAPAGWDLLQSREGDGIRGRAWTRSATVADGGRTVTVAGSAYAKSVMTVAAYRSTGPAVVGASAVGGANAPATSHTTPATTAAHANSWLVSVWSEKSTDPTTWTLPAGTSTRSQATATGTGKVSAVLGDSDGSVPVGAVPGRTATTSTSVSRSTMFSVVLDPGVDATATNEPPVAEFTTGCAGLTCEFDAAHSFDPDKDALTYSWQFGDGQTGSGVAPAHTYASAGTRTVTLTVDDGHGHTDQAISSASAVPPNPAPGHTALVPDTPRTNQPTITSGEIWDIEVVGNRVYVAGSFTSIRQPNNGATVSQAYLAAYNWSTGQVDTTFRPVFGNGQVDAVEASPDGTRLYVAGNFGTVNGVSRKAIARLNPATGAPVEGFTANANAKVNELAVTNTTVYAGGRFTTINNVPRGALVALDGANGTVRPEFVNNITGGIGTNGELAVQRLKLTHDEGRLLVVHTGRQVNGKDRYGVAIINTRTNQLTPWRSTLWEDNLQFVGGIQRAYGGDIGPDDSYFVVTSGSGGDRPPINDTVIAYALDDDSDAEPLWISRHFDSVYSVAATEAGIYVGGHFQWAESASAPVPWPGLDDVGYGTGQGLSAYALGDAVVKRFHLAALDPSDGHALEWFAPSNSYEGDKHIEATSRGLFVGGDGNTKGSYNVGRVAFFDFANVPTQNGTQTVVTAPIEGRIEPVGTPYEITGSATAASGIQRVELEVMDRASGRYLNDDLTTWGSTTSNTFTATLDPGTGTTRTWRMPLTMTNNRELLVRARAVAGNGTADNTKATKKFETFGTSDQPPDTSVSGPGSPVASLTFTITGTASDDFGVNGVSFTLRDSQNRYLQDDGSVSGTYNTFQVEPDVVGATSTTWSYEITVPYEDEWWAQARATDTTGQSDLDTADRRWIVTENGHPPTVSITQPATMVPPTAAQPVVVSPGSPLTFSGSANDDEALSEVSITLRNTSTGERLASDGSWGTSVTAGSYRVSPVNLDQASYNWSYTTPFNLSPGTYTFTVSASDDIGLGTSSANQGRLTLNAQIPGDSPPNGTLNVTGTVTGLQVLQLDLAGSATDDKGVARVGVALQDRDTSRYLQPNGTMSANFATLDAVLASPGATTTSWTRSVSLPSQGDWAVTAYAFDSAGQQDPSTTGATARYPIYPGDQPPVMNEALLNPLEGTEFLDGRIFVSGRAEDDQAMQEVGVAIVNASGQYMSSSGTFTSTTASWRTAFLNSPGTPGSNFSYTTPVIPPGAYTVRVRAIDQHDFVSVIYERHATVVHPPNNPPVASFTATCTANVCAFDARGSTDENATTLVYSWSFGNGSGSGPVPTRTYTAAGTYTVTLTARDEWGVTATATQALVITTPPGNRPPVAVLNPPACSGLSCNFSAVGSQDPDAGDTISYQWAWGDATPNATASSASHVFPAAGTYTVTLTVTDGWGAPTTATRTVTVTAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V620</accession>
    <name>A0A0Q8V620_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14840</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896436.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51369">
        <property type="protein sequence ID" value="KRC51369"/>
        <property type="gene ID" value="ASE19_14840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="266" mass="28823" checksum="A12D6BB235AA751F" modified="2016-01-20" version="1">MTADDLIIDRDRLAPGVLEVTFNRPERRNAFTKAMYGELRQLWQQTAEDESVRVVVLRGAGGKAFAAGNEISDFLEADAVEYENWIREMFDLLWALPQVTIAAVDGVCVGGGLAVATHCDLRVATDASRFGYPIARTLGNALSGTVLYRCQAIFGESLTREMLLASRLVTADRAHGVGALTSVVPDAEALDAEITALAEGIVQASRVTIETTKHQLLARAQPAEASIDGEEELLRAVYTGPDFAEGVRAFLAREKPSFSATRRPGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V650</accession>
    <name>A0A0Q8V650_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09765</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894646.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52708">
        <property type="protein sequence ID" value="KRC52708"/>
        <property type="gene ID" value="ASE19_09765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1024978at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004069">
        <property type="term" value="F:L-aspartate:2-oxoglutarate aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024551">
        <property type="entry name" value="AspAT_Ic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12897">
        <property type="entry name" value="Asp_aminotransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="426" mass="45037" checksum="7B4FB826811621C1" modified="2016-01-20" version="1">MTTSTPLSDLSADELAARLTTVRADYDALTARGLKLDLTRGKPGADQLDLSNGLLGLPTSYQDRSGTDLRNYGGLDGLVEIREIFADLLGVDLAAVVCGGNSSLTMMYQVITAMLLKGGPDSPRPWSQEPVVKFVCPVPGYDRHFTMLAELGIEMVTVPMNADGPDVAAVRALVADDPTVKGMWIVPTYANPTGSVCSPEVAAELVALPTAAPDFRILWDNAYAVHHLTEDELKSADVLGLAAASGHPNRPIMFASTSKITFAGAGVAALAASPENRAWYLQRLGFASIGPDKLNHLRHVEFFGDADGVRAHMRKHRDLIAPKFAAVEDALSSRLSGLGIAEWTAPTGGYFVNLDVLDGTATRVVALAKDAGIALTPAGSAFPHGDDPRDRNIRLAPTFPVLEEVEAAMAGVAVCVELAALEKLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6L4</accession>
    <name>A0A0Q8V6L4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10800</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894823.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52891">
        <property type="protein sequence ID" value="KRC52891"/>
        <property type="gene ID" value="ASE19_10800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1997536at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021994">
        <property type="entry name" value="DUF3592"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12158">
        <property type="entry name" value="DUF3592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="119"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="252"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="273" mass="28955" checksum="ABC954C695F90585" modified="2016-01-20" version="1">MAVSEPSPFQFVPRPTHGVGLAVAQVLLLAGSLLAGYGIGCTVIDANEDAPASYVAGDDIGIATIGGCIIAVVGLVMWSFMVDSHPLAVGQLHSWGTSLPAGAFGLLIATSHLGAGDTYALVAIGLALAGAVAMVLGYVAVSRRRRRYRHELDLIARGTAVPATVLDSGLDPDDFEEASNVITTVTFRFVIGDHAYRLHRRMTIPQHGLVLEGQRTTVWYDPADPTDDRAMVVAMQHALRWNVPVPRVAEVPPVTAPDMESGHRGPGDRARRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6W1</accession>
    <name>A0A0Q8V6W1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17960</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893208.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48807">
        <property type="protein sequence ID" value="KRC48807"/>
        <property type="gene ID" value="ASE19_17960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="83676at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="661"/>
            <end position="688"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="729"/>
            <end position="770"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="824"/>
            <end position="851"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1149" mass="127296" checksum="15DF4BECD3F67A77" modified="2016-01-20" version="1">MSVDEAVSGLFAEEVVAVPADDTVQWRASLLQLVNWGGFGGLTTVPLAGEATMISGASGVGKSTILDAYTALMMPSDTKFNGASNDAVAGRARSVGQRNLLSYLRGAVDVIDDPKTGRPVEKLLRGKGADTWGAVAMTFVSDQGGRFTALRTYYVPRRAARSSDVHMQMWTHEGTLPLDKLEAAVPEKFHANTLKKLFPGIRVHRTYAEFSAVLHARLGIGANGDGGKALRLLARIQAGNQVRSVDELYKDMVLERPATYAAADRAIEHFDDLDAAHAAMRTEQQKLELLEPITDMYERRTAAARRLDELDSYGITQAGDQTPLRYWLLRTHLRLIESAVAANRDARAATVQALASAQAAELQLAGDLDAAKEAHRDAGGGDLQRLAALADAERNLRVERGNRLAELEDRVYPLIGLPDIDPPDLEAAVEDAGAFTVLQEQARERVVAGEKEQKRLQAERETVLREQQFPLTQEQSVLKQERASLESRAGRVPSYLHDLRTAVARASGLSVDELPFVAELIDVAPEEARWRTAVETVLGGSARMMLVPLDRLQDFSSAIDELRLPARLTFQGVELDLPETGPSDPERIAGKLLFKDSPFAGWVQQHVEDPSRNALCVANAADLDGPGFRVTLAGQTRNGRRGAHGRNDVRNIIGFSSEDAIAEIDAQLVEVESRLAEIDGRLAELGRRSSLIDLQRKAYDAIVMVRFDDVDVAGSDRRIADLEERRAAILASDDRLQVLQAQIDQLEADLGQARKERFSLDQRKDQLQDDQRELYDAEDTIKDRVFAIEDAGVVVLDEVQEAALAADFAAAAAPDDPEDLDRFNNNSQRLGERLRTALADAEAEIKRCDEDLAHIFRSYKFTWESPNLGATVESYADYARILDDIRGKGLADRHAEWRRRLTEWSGQDLVPLLGAMSSSVEEIEDRLEPINAILRRLEFGASGDRLRIRLRRLAPAHVQAFMKDLRELSTGTTSELKEEDLERRFAELSRFMRQLRRSEHSTDGPTERDKLLDVRRHVEISAERYDFLSGEVRATYRTLGEKSGGESQELVAFIVGSALRFRLGDEMRSRPRFAPVFLDEGFVKADSEFAGRAVQAWRGLGFQLIIGVPLDKVTGLEPHMDELLAITKNAQTHQAWITPISDVVEADPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6X6</accession>
    <name>A0A0Q8V6X6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Amino acid permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_18055</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893224.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48823">
        <property type="protein sequence ID" value="KRC48823"/>
        <property type="gene ID" value="ASE19_18055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="527053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="52"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="95"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="138"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="168"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="198"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="240"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="281"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="345"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="370"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="416"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="460"/>
            <end position="482"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC48823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="508" mass="54170" checksum="3D1E0D25062777CC" modified="2016-01-20" version="1">MTQTNRPTELAAEQQALLHKTLGRFDIIFLLIAAVVGLETLGQVSLFGAEAFTWALVLAVFFLVPYGLIFAETGAAFSEEGGAYTWVRDAFGRPAAAVAAILTWITQPVWVGGSMAFIAAETFSTYLTPLEEGSFGDYLFKIVFIWITVLAAVVSLRKGKWLPTSGALLKIGLLAFFVLTTGVYAAQNGVVGLSLGDFSPTLLGLFGSVPILLFAYLGFESGNSAAGEMKNPARDVPVSIFRSCATAAVCYLIPIFAILLVVPSDDITGIGGFLDAVGTVYSVYGGAADALLKITAVVFIYILMSQGASWMIISDRMQAMTAADGSFFGGFFGRFHAGLGTPVRVNMLSGVVGTAFMLAAMQMTGSGADVFGVVLTISISTFLLSYLLVIPAAIRLRTLYPERERPFRVPVSDRQFAVLGWTAFAWVLLGSWVAVFPGTLERLFGEDYPFTEYWGVSQTTFEVFTLGTLAFLLALCALGYVLGAPVRASGATITPSVPPAEPAEEIAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V752</accession>
    <name>A0A0Q8V752_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Probable cytosol aminopeptidase</fullName>
            <ecNumber evidence="8">3.4.11.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Leucine aminopeptidase</fullName>
            <shortName evidence="8">LAP</shortName>
            <ecNumber evidence="8">3.4.11.10</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Leucyl aminopeptidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">pepA</name>
        <name evidence="10" type="ORF">ASE19_18590</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>Release of an N-terminal amino acid, Xaa-|-Yaa-, in which Xaa is preferably Leu, but may be other amino acids including Pro although not Arg or Lys, and Yaa may be Pro. Amino acid amides and methyl esters are also readily hydrolyzed, but rates on arylamides are exceedingly low.</text>
            <dbReference type="EC" id="3.4.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>Release of an N-terminal amino acid, preferentially leucine, but not glutamic or aspartic acids.</text>
            <dbReference type="EC" id="3.4.11.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="8">Binds 2 manganese ions per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the peptidase M17 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.1" evidence="8"/>
    <dbReference type="EC" id="3.4.11.10" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48919">
        <property type="protein sequence ID" value="KRC48919"/>
        <property type="gene ID" value="ASE19_18590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="356206at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00433">
        <property type="entry name" value="Peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00181">
        <property type="entry name" value="Cytosol_peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011356">
        <property type="entry name" value="Leucine_aapep/pepB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000819">
        <property type="entry name" value="Peptidase_M17_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023042">
        <property type="entry name" value="Peptidase_M17_leu_NH2_pept"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008283">
        <property type="entry name" value="Peptidase_M17_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11963">
        <property type="entry name" value="PTHR11963"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00883">
        <property type="entry name" value="Peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02789">
        <property type="entry name" value="Peptidase_M17_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00481">
        <property type="entry name" value="LAMNOPPTDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="SSF52949"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00631">
        <property type="entry name" value="CYTOSOL_AP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8 10" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 8" id="KW-0464">Manganese</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CYTOSOL_AP" evidence="9">
        <location>
            <begin position="344"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="276"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="350"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="264"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="269"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="287"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="346"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS00631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC48919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="505" mass="50837" checksum="34F43BFADC06A9F0" modified="2016-01-20" version="1">MTTFALRTASPAKTKAEAVVVGVLADGTLAPGAEDVASAYGRKLSGLLTTLGMKGRPGEVAKVPTAGTIASPLLVLVGIGEVADADSVRRAAGNAARAVTNAASVALALPADSPELVRAVIEGYRLGGYTFTAYKSKPGASTTPAEIVVLTPAARRSEVAAAVEPAQVLVDAVAATRDWVNTPPADLTPPSFADAIAAAVKAGNKQLPSGGTKVTATVLDEVRLAELGCGGILAVGAGSAAPPRLVELSYAPKDAVAHVALVGKGITFDSGGLWIKPAGSMTTMKEDMAGAAAVVQATIAVARLGLPVRISAFAALAENMVGASSMRPGDVLTTYDGTTVEVSNTDAEGRLVLADALGRAVEQEPDVLIDIATLTGHMALALGDRIAGVLGDDAIVGEVLAAAAAAGEDAWPMPLPEFMDSRIRSSTVADLAQYDGIRWGGGIYAAAFLREFTGGLPWAHLDIAGPTFNKGGANGHLVPGATGYGVTTLVEIIRGRAAAAPSEPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7C7</accession>
    <name>A0A0Q8V7C7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15000</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51395">
        <property type="protein sequence ID" value="KRC51395"/>
        <property type="gene ID" value="ASE19_15000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1196738at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="2">
        <location>
            <begin position="42"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="315"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="334" mass="36910" checksum="7518E61CD69AF7F7" modified="2016-01-20" version="1">MAGWCSDTDVEGDLMSERTVITEDGLQLHVTVRGRDDAALTVLLSHCWTAEESDWHYQVTDLLARYGHDVRIITWDHRGHGRSDRAPEHACTIPHLARDLGLVVDTFAPDGPLVVAGHSVGGMTITAIPEERPDLMPRVVGVLFVSTTSGELSKVTLGLPAATGPILRDRLPFILASRSRMLSLSRRERFPVVERQIAKRFLFGRPARPRDVGHVVDQLIHAWPETMSGFFRDMMAHDRIGNLAAFDDIPATVLVGSRDLLTPPEHAGKIAQGIRGARLLVAPDAGHYLPFERRELVSAELCVLIDRALARIATQPDGERDGKRTPRGRHRAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7E6</accession>
    <name>A0A0Q8V7E6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">GntR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_15100</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51411">
        <property type="protein sequence ID" value="KRC51411"/>
        <property type="gene ID" value="ASE19_15100"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="5"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC51411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="235" mass="25026" checksum="58D0A8472316E38B" modified="2016-01-20" version="1">MVARTALHDDVLDALGRRIVGGELAVGAVLTLDIIDTEHDVSRSVSREAVRVLESMGMVASRRRVGVTVQPRTSWHVFDPRLIRWRLDSDDRAAQLRSLGELRSGFEPVAAGLAAERATPEQCGALATAASDMVVHGRSGDLEAFLQADVAFHRILLEASGNEMLAALDGVVAEVLAGRTHHHLMPTHPKDEAVDLHVEVARAVRSGDVTGARAAMAAIISEATGAIDEDPTTLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7T6</accession>
    <name>A0A0Q8V7T6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12575</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895126.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53199">
        <property type="protein sequence ID" value="KRC53199"/>
        <property type="gene ID" value="ASE19_12575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1906817at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007436">
        <property type="entry name" value="DUF485"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04341">
        <property type="entry name" value="DUF485"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="124" mass="14105" checksum="09BD50DBAEF44D6A" modified="2016-01-20" version="1">MSSDLSPHDSHQTAARHDPVYDELHASPEFTELRRRYRSFVFPATVAFLAWYLLYVVLSVWGGDFMGNKVVGNINVALVFGLLQFATTFALAWLYSRYSTSKLDPLARELDERFVALSQKGGER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7W8</accession>
    <name>A0A0Q8V7W8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13275</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53320">
        <property type="protein sequence ID" value="KRC53320"/>
        <property type="gene ID" value="ASE19_13275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="279" mass="27900" checksum="A8D7C703624241C3" modified="2016-01-20" version="1">MEQVRRSARQVADRARLGAPDLAALAQHVTEMATGLAAASGGWVSVRDLGPVGGPGVEATAFGRADALTDAVTPTWNRFPASPSEAGSAYVTGLVAAADDAGGAHGWRAWHGPTSLGILVCAAVDGGPQGAQLLERALSFPAVTTPRATLRVLHGMLAGTAGVAAAAIEVDLAARTARAASVGDVVVDLLADGVRTVAPARCGVVGVGSRPPGLRGDEVTVGWSRGLSVVVHTAGIEGDGWTATGGAGAHPALLCARLMQEHRTAAEDACVVAVRVGLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8E1</accession>
    <name>A0A0Q8V8E1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14160</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897025.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53478">
        <property type="protein sequence ID" value="KRC53478"/>
        <property type="gene ID" value="ASE19_14160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1492756at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="263" mass="28671" checksum="D3351B47608DD367" modified="2016-01-20" version="1">MLMRPAELEAIREGAVDLAFRRWDRPRVKVGTRLRTAVGLVEVVSVEPTSLSALRAEDARRAGAANLAALKDALAARPERPVFRIGLRYAGTDPRETLRDTLPDSAEVATILAGLDRLDAASPIGPWTRTTLRIIDRNPEVRAPELAAELTRPTAEFKRDVRKLKERGLTESLAIGYRLSPRGEVVLDHVDGPRERAPRRDGHPLPRTIGAPATRALRGVDVHTLEAVSGWSRRDLAALHGVGPIALDRLEAALAQLGLTYAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9A5</accession>
    <name>A0A0Q8V9A5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LLM class F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07025</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895265.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53834">
        <property type="protein sequence ID" value="KRC53834"/>
        <property type="gene ID" value="ASE19_07025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019921">
        <property type="entry name" value="Lucif-like_OxRdtase_Rv2161c"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03619">
        <property type="entry name" value="F420_Rv2161c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="17"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="282" mass="30579" checksum="D53D5174BF8EF8C6" modified="2016-01-20" version="1">MRNGIVLFTSDRGITPARLAVAAEERGFDTIYVPEHTHIPVRRDALHPTGGEELPDDRYLRTLDPWVSLATCAAVTTRIGLSTAVCLPVESDPITLAKTLATLDHLSGGRVTIGAGFGWNTDELTDHHVPAAKRRTVLREYLEAMRALWTQEEAAYDGEFVSFGPSWAYPKPPQGRIPVIIGAGAGPKTFDWIAANADGWMTTPTTTDVAANADTLRKVWADAGREGQPDVRILVAKRPTEEDFADWMGAGASELIWGVPDSDESAVLTYLDKMAARLGLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9L3</accession>
    <name>A0A0Q8V9L3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08130</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895462.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54030">
        <property type="protein sequence ID" value="KRC54030"/>
        <property type="gene ID" value="ASE19_08130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1567509at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030975">
        <property type="term" value="F:thiamine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015888">
        <property type="term" value="P:thiamine transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005948">
        <property type="entry name" value="ThiB-like"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01254">
        <property type="entry name" value="sfuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359834" evidence="1">
        <location>
            <begin position="22"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="352" mass="37965" checksum="70A9996B6023BC64" modified="2016-01-20" version="1">MRARVLTTITALTAATLLAGGCSLVGQEDDDKGGVKSTQVTLVTHESFNVPKALVAQFEKDTGYHLTISKLADAGALTNQLVLTKDDPVGDVVFGVDNTFATRAIDEGVFDSYEPDLPSGADAYQLPGSAGEVTPIDDGNVCVNVDSAWFRAHDLAEPQTIADLTDPAYKDLLVIPAATTSSPGLAFLLATIGRYGDQWQGYWEDLTRNGAKVVKGWSEAYFEDFTFSGGDRPIVVSYDSSPAFTLNKAGTKTSTRALLDGCFQQVEYAGVLKGEGTNVDGAHAVIDWLLSPEVQASLPEEMYVFPVDPAVELPAVWAKFAKRPTTTEKVDPAEITEQRKTWLEEWSDITSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9P1</accession>
    <name>A0A0Q8V9P1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SAF domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06895</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895243.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53812">
        <property type="protein sequence ID" value="KRC53812"/>
        <property type="gene ID" value="ASE19_06895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2060643at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013974">
        <property type="entry name" value="SAF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08666">
        <property type="entry name" value="SAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00858">
        <property type="entry name" value="SAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="domain" description="SAF" evidence="2">
        <location>
            <begin position="50"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="21524" checksum="63E58CE9A58B4633" modified="2016-01-20" version="1">MDSPGRRIADTLTEVRRRVLRRRRPIAALLVAGAVAATLHTLAPPPPATTAVRVAGRDLPAGHVLAAGDLVDAAVPSGVVPDGVVGTPEGRVLAAPLRAGEAVTDVRLVGAGLAAAQPPGTVALPVRLADAGQATLLTVGDRLDLVATDPRARTAEPLASDVVVLALPDGRHAGDDALPGRLVVVGLHSSDVYRVTAAAVAAYVTYTWRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA90</accession>
    <name>A0A0Q8VA90_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">NlpC/P60 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_08110</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C40 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54027">
        <property type="protein sequence ID" value="KRC54027"/>
        <property type="gene ID" value="ASE19_08110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="682655at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000064">
        <property type="entry name" value="NLP_P60_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00877">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51935">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NlpC/P60" evidence="4">
        <location>
            <begin position="286"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="239"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="151"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="28"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="406" mass="42917" checksum="E10AD0635E160C37" modified="2016-01-20" version="1">MLTAGVVAPAIADSDGADGTGRPGKPSVAEVREAREDAAAAKSDVDRVRERLAAADAALDAASIRAAKAAEAWNGARWQAQQARRAERVAAAASARSDRALAEQKESYRDVVLTTHNMGIDLNIATSMIAADGMESLLEQTATNDRVRALLEQQRQDYDAAADLAADAEQAATDAAAEADRTLAAARTARDAAQAEAGAAAATARQVGQQKVRLVRTLARLEGVSVAVAQRRQDALAQEQRAAREAAVRRKPASKPAQQPAQQHADKPDKPDPQADPQPAPTPAPAGGAWAAVAFARAQLGERYVWGAAGPDTWDCSGLTSKAWAAGGKSLPHYSVAQYDVTTPISASELRPGDLVFWGDSDSPSSIFHVALYVGDGRIVHAPRTGRPVTEESMYYWRTPDFYGRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAB6</accession>
    <name>A0A0Q8VAB6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08570</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895534.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54102">
        <property type="protein sequence ID" value="KRC54102"/>
        <property type="gene ID" value="ASE19_08570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="265" mass="27807" checksum="C3C4E110B469AFCC" modified="2016-01-20" version="1">MDLGLKDARVLVTGGASNIGRGIVHAFAAEGSRVVLADVDEEQAERVAVEALERGAAAVEVVAGDLTTEGEAQRAADRAVETWGGVDVLVNNAGWSVPGFIAKNTDRANWQKTVEINFFTAIAATQAVLGPMREQGRGSIVFIASESAFGQIRQGVYGATKAAVVALARTTAREHGRHGIRSNIVCPGLVVPDGPEAVGSKSLWAVGKDNVFNDDQAQYLLKDTPLGRLTSAEDVAGAVLFLASERMSRQVTGQLFSVSGGYTMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAD7</accession>
    <name>A0A0Q8VAD7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_14955</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51473">
        <property type="protein sequence ID" value="KRC51473"/>
        <property type="gene ID" value="ASE19_14955"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="29"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="65"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="91"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="125"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="153"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="187"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="211"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="254"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="290"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="319"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="343"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="391"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="415"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="1"/>
            <end position="443"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC51473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="455" mass="47136" checksum="C71D8A7C22726A2A" modified="2016-01-20" version="1">MYIVLLAQLMLVLDSAVMNVGLPHIATDLHFGAASLSWVLNGYALAFGGLLLLGGRLGDVFGRLSVFWIGLAVFTLFSLLGGLATEPWMLVAARALQGVGAAIAAPSVLALITTTAADEAARNRALALFTAVSSGGAALGMLLGGVLTDLLSWRWTLFINVPIGLAVLLTVRRYVADTPRRPGRFDVVGAVSATGAAVALVWTLIKAPEHGWASAATIGGFAVAALLAVLLVVTEARHSHPLLRLGLLRNRARVATLVTMAGLYGGMLATFFLMVQYFEEDLAYGPLQTGFAFLPIPLSVFTMSRITPRLVARFRQPPIIVAGATGVLGSFVFLNQIDASTSYWTGVFPALLVMGLSMGGSFMPITSLALQGVEPEHAGAASGLLQTMQQLGGAVGLAVIASVFASHSVPGDFLAGAHAGFAAASIIAAIGLASAATLLARRRVRVVPVAEAEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAE4</accession>
    <name>A0A0Q8VAE4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Nicotinate-nucleotide diphosphorylase (carboxylating)</fullName>
            <ecNumber evidence="4">2.4.2.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Quinolinate phosphoribosyltransferase [decarboxylating]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_07985</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the catabolism of quinolinic acid (QA).</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D-ribonucleotide from quinolinate: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the NadC/ModD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.19" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895634.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54202">
        <property type="protein sequence ID" value="KRC54202"/>
        <property type="gene ID" value="ASE19_07985"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00331"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004514">
        <property type="term" value="F:nicotinate-nucleotide diphosphorylase (carboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01572">
        <property type="entry name" value="QPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004393">
        <property type="entry name" value="NadC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027277">
        <property type="entry name" value="NadC/ModD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036068">
        <property type="entry name" value="Nicotinate_pribotase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037128">
        <property type="entry name" value="Quinolinate_PRibosylTase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002638">
        <property type="entry name" value="Quinolinate_PRibosylTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022412">
        <property type="entry name" value="Quinolinate_PRibosylTrfase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32179">
        <property type="entry name" value="PTHR32179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01729">
        <property type="entry name" value="QRPTase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02749">
        <property type="entry name" value="QRPTase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006250">
        <property type="entry name" value="NadC_ModD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51690">
        <property type="entry name" value="SSF51690"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00078">
        <property type="entry name" value="nadC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="QRPTase_N" evidence="12">
        <location>
            <begin position="44"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="QRPTase_C" evidence="11">
        <location>
            <begin position="132"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="153"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="263"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="284"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="216"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00033102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR006250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR006250-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC54202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="305" mass="31744" checksum="EC4ED4B817B1AD3A" modified="2016-01-20" version="1">MARTPYDELPSALVDEIRAAGLDPQAVYDHVVLAFEEDLPGGVDDVTSAAMPDMGEAVADFGAREPGVVAGLAIAELAFVYALGDTVKVTGRVPDGTRVVPGDVVLTVSGPVRGVLTAERTALNFASHLSGVATATAQWVDALAGTRARVLDTRKTLPGWRALQKYAVRCGGGVNHRFSLVDRAMVKDNHAVAAGGVVPAYRAVVAANPGLRVEVEVMDLDELRAILAAGCTEVLLDNMSTADMAEAVRINAEAGGHATLEASGGLTLERAREVAETGVDFISVGALTHSVDVFDLGLDFRTSQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAI2</accession>
    <name>A0A0Q8VAI2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sulfatase-modifying factor 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07730</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895632.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54200">
        <property type="protein sequence ID" value="KRC54200"/>
        <property type="gene ID" value="ASE19_07730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005532">
        <property type="entry name" value="SUMF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042095">
        <property type="entry name" value="SUMF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03781">
        <property type="entry name" value="FGE-sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="SSF56436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FGE-sulfatase" evidence="1">
        <location>
            <begin position="7"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="32010" checksum="A189013118CCBFB7" modified="2016-01-20" version="1">MRTARGLLVRGGATTIGSEDHYPEERPVRPVEVRDLWVDEHPVTNAEFRRFVADTGHVTVAELPPPPAPGERAEDLVPGSLVFAPPPGPVPLDDWRRWWAWLPGADWRHPGGPGTDLSGRDKHPVVHVARSDAEAYAAWAGKRLATEPEWEHAARGGALSTYPWGEELLPRGRPMANTFHGDFPWRHDDPKGAGTTPVGSFRPNGYGLVDMIGNVWEWTASPWTDDHGPAPLELVASCCAPSRPADEDARGVTKGGSHLCAPSYCRRYRPAARQGQALTSSTGHLGFRCVRDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAT2</accession>
    <name>A0A0Q8VAT2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fur family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07180</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Fur family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895623.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54191">
        <property type="protein sequence ID" value="KRC54191"/>
        <property type="gene ID" value="ASE19_07180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1630127at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07153">
        <property type="entry name" value="Fur_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002481">
        <property type="entry name" value="FUR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043135">
        <property type="entry name" value="Fur_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33202">
        <property type="entry name" value="PTHR33202"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01475">
        <property type="entry name" value="FUR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="140" mass="15267" checksum="914533E8383310C8" modified="2016-01-20" version="1">METQDWRATLRDKGYRLTPQRELILAAVDELGHATPDEVLAKVQATASTVNASTVYRTLEVLEELGLVRHAHLSDRAPTYHSVRGHEHFHLVCRGCHAVTSVDAAEAAPFVAVLEAKGFVPDLGHLTVFGRCADCEGAPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VB27</accession>
    <name>A0A0Q8VB27_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nitroreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10595</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a quinol + H(+) + oxidized coenzyme F420-(gamma-L-Glu)(n) = a quinone + reduced coenzyme F420-(gamma-L-Glu)(n)</text>
            <dbReference type="Rhea" id="RHEA:39663"/>
            <dbReference type="Rhea" id="RHEA-COMP:12939"/>
            <dbReference type="Rhea" id="RHEA-COMP:14378"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="ChEBI" id="CHEBI:133980"/>
            <dbReference type="ChEBI" id="CHEBI:139511"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the F420H(2)-dependent quinone reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894784.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52851">
        <property type="protein sequence ID" value="KRC52851"/>
        <property type="gene ID" value="ASE19_10595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1738213at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004378">
        <property type="entry name" value="F420H2_quin_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04075">
        <property type="entry name" value="F420H2_quin_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00026">
        <property type="entry name" value="hi_GC_TIGR00026"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00029371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="161" mass="17837" checksum="C003ED78B4986E74" modified="2016-01-20" version="1">MAATKPKPDGLDKPIVAKIIKYGAKANVAVYRLTNGRIGAKWRIGAGWRKPVPVLLLDHVGRRSGTRFTTPLLYLADGRDLVVVASQGGLPKNPQWFHNLVATPDTTVAVPGERSRPVHARVASPEERAALWPRLVDIYADFDNYQAWTDREIPVVVLEPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBW3</accession>
    <name>A0A0Q8VBW3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12310</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895082.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53155">
        <property type="protein sequence ID" value="KRC53155"/>
        <property type="gene ID" value="ASE19_12310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1582456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="278" mass="28866" checksum="487B7E2611B444B9" modified="2016-01-20" version="1">MARRTKHADAVVTGAGSGIGRAFARELARRGGRVVCADLDETAAKETVAAIEAAGGEALAVACDVADVAQVQSLHDSAVDWLDRAPRLVVNNAGIGAGGKVVGEAPLADWQRTLGVNLWGVINGCHVFVPTLREAGRGGGVINVASAASFTAAPRMGAYNVSKAGVVSLSETLAAELAGTGIAVTVLCPTFVRTNIFDGELIDPGAAGMARRIARIAGFSAERVARTTLDAHDKGRLYVVPQLDAQLLWRTKRLLPAPYTRAAGLLGRFVPDEEGAHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC48</accession>
    <name>A0A0Q8VC48_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12800</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53235">
        <property type="protein sequence ID" value="KRC53235"/>
        <property type="gene ID" value="ASE19_12800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="160"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="210"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="253"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="278" mass="29469" checksum="FFEFCC60CF589FF8" modified="2016-01-20" version="1">MAMSRTDVSRHLAKPTTALRNLGDQLRFHGDAYSHMPRVLRHYPKEVVRLLAEVSLGTGALALIGGTVLVIGFLTAASGIEVGLQAYTSFDNIGVSTLSGFFSAYFNTREVAPIIAGIALTATVGAGFTAQIGAMRVSEEIDALETMAVHPVPFLVTTRIIAGLIAVVPLFAIALMMCWLATYLVVTVGYDQSPGTYMHYFETFLIPSDLFLAIIKVALMALVIVSICCYHGFRASGGPAGVGKAVGKAVRSALICTMFIDLIFAIAIWGGPSVHIAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCG3</accession>
    <name>A0A0Q8VCG3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glutamyl-tRNA(Gln) amidotransferase subunit A</fullName>
            <shortName evidence="7">Glu-ADT subunit A</shortName>
            <ecNumber evidence="7">6.3.5.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">gatA</name>
        <name evidence="9" type="ORF">ASE19_05735</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + H2O + L-glutamine + L-glutamyl-tRNA(Gln) = ADP + H(+) + L-glutamate + L-glutaminyl-tRNA(Gln) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17521"/>
            <dbReference type="Rhea" id="RHEA-COMP:9681"/>
            <dbReference type="Rhea" id="RHEA-COMP:9684"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:78521"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.7"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Heterotrimer of A, B and C subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the amidase family. GatA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.7" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894127.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54949">
        <property type="protein sequence ID" value="KRC54949"/>
        <property type="gene ID" value="ASE19_05735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1239251at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030956">
        <property type="term" value="C:glutamyl-tRNA(Gln) amidotransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050567">
        <property type="term" value="F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00120">
        <property type="entry name" value="GatA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020556">
        <property type="entry name" value="Amidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004412">
        <property type="entry name" value="GatA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00132">
        <property type="entry name" value="gatA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00571">
        <property type="entry name" value="AMIDASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Amidase" evidence="8">
        <location>
            <begin position="25"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="7">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="7">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="7">
        <location>
            <position position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="508" mass="52592" checksum="8DD3263336C4AAC7" modified="2016-01-20" version="1">MSELITKTAAELAEALAAGETTSVELTQVHLDRIAAVDGDAEAGIHAFLHVDPEGALAQAAESDARRAAGETRHLLDGVPIAVKDVLATQGLPTTCGSKILEGWVPPYDATVVRRIKAAGLPILGKTNMDEFAMGSSTEHSAYGPTRNPWDQTRIPGGSGGGSAAAVAAFEAPLALGTDTGGSIRQPGAVTGTVGVKPTYGGVSRYGLVALANSLDQVGPVTRTVLDSALLHELIGGHDPLDSTSVDAPVGSFVEAARQGATGDLAGLRVGVIKELAGDGWQAGVMQRFAETVDLLKELGAEVTEISCPSFVHAMAAYYLILPAECSSNLAKFDAMRYGLRVVPEGDPSAEAVMKATRDAGFGDEVKRRIMIGTYALSSGYYDAYYGQAQKVRTLISRDFAAAFENVDVLVSPTSPTTAFALGDKLDDPLAMYLQDLATIPANLAGVPGISVPAGLADEDGLPVGFQVLAPALADERLYRVGAAVEAALTTRWGGPILAKAPNLEGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCT1</accession>
    <name>A0A0Q8VCT1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05535</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894165.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54916">
        <property type="protein sequence ID" value="KRC54916"/>
        <property type="gene ID" value="ASE19_05535"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="156"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="182" mass="17887" checksum="1909C2D46D679ED4" modified="2016-01-20" version="1">MTGPVLTVRDRGGQRVATLSLGGLARRAGIVGAALVVDLAVLSSAPGTPWWPGIVVLTLALVAAEVPDSQAPLLTLAVAAGWWLAAVPWPAPSPGRVLLVALALLVLHATTAVAAIGPPGRVAEARVVRAAAGRAALVGTGTTGIGALALAADGRVVVPGAVGVALLAVAGLAWAATRPTRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD42</accession>
    <name>A0A0Q8VD42_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Iron-sulfur cluster carrier protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_05080</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the Mrp/NBP35 ATP-binding proteins family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the C-terminal section; belongs to the Mrp/NBP35 ATP-binding proteins family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the MIP18 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894407.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55134">
        <property type="protein sequence ID" value="KRC55134"/>
        <property type="gene ID" value="ASE19_05080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1413173at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140663">
        <property type="term" value="F:ATP-dependent FeS chaperone activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02040">
        <property type="entry name" value="Mrp_NBP35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034904">
        <property type="entry name" value="FSCA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002744">
        <property type="entry name" value="MIP18-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019591">
        <property type="entry name" value="Mrp/NBP35_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000808">
        <property type="entry name" value="Mrp_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044304">
        <property type="entry name" value="NUBPL-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033756">
        <property type="entry name" value="YlxH/NBP35"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42961">
        <property type="entry name" value="PTHR42961"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01883">
        <property type="entry name" value="FeS_assembly_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10609">
        <property type="entry name" value="ParA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117916">
        <property type="entry name" value="SSF117916"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01215">
        <property type="entry name" value="MRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeS_assembly_P" evidence="6">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="115"/>
            <end position="122"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="381" mass="39344" checksum="57544F1ECB2A29D4" modified="2016-01-20" version="1">MTALSRVNDPEIKRPITELGMVDSVDIAPGDGGSVVSVKALLTVAGCPLKDTITRDVTAAVTAVPGVTAVNVELGVMSAEQRSGLHETLRGGQAEREIPFAKPGSLTKVFAIASGKGGVGKSSVTVNLALALAKAGRKVGIVDADIYGHSVPAMLGVADSRPTQVDDLIMPVPTASGVSVISIGMLKPRRDQVVAWRGPMLDRALVQMLADVYWGDLDVLLLDLPPGTGDVAISLGQHLPGAEVVVVTTPQEAAAEVAERAGTMASMMHQRVVGVVENMSYLPCPHCTEEGKDHRLEIFGSGGGDRVAATLSQRFGYDVPVLGSIPLDVSLREGGDVGKPIVESDPTSAAATALSGIADRLDGRGRGLAGLQLGLTPTSKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD87</accession>
    <name>A0A0Q8VD87_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutathione S-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09655</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894626.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52688">
        <property type="protein sequence ID" value="KRC52688"/>
        <property type="gene ID" value="ASE19_09655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="880894at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025714">
        <property type="entry name" value="Methyltranfer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13679">
        <property type="entry name" value="Methyltransf_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltranfer_dom" evidence="1">
        <location>
            <begin position="164"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="401" mass="43928" checksum="756846BD60AA44BD" modified="2016-01-20" version="1">MTSRTETLDAGLARVRGDLLADDRLVRAVASGRRRTGVPPYRRVELRWVDLKAGRHLQVVRYDATQAHTSNHARGEDAAAEVDGLLAEAYGNWTVETTTQTLSLRVTKKGDAAVHTAARAADEPVPERSHDRAKERMLPEDDPLFAALGLADAKGRIKPSRMAKYRQVEDFLRILDRSVADARARGHLRRPTESDPLRIVDLGCGNGYLTFAAHRFLSEQRGIPVRLTGVDVKEQSRDHNASVAAGLGIDAHFVAGTIGEAELPEPPDVVLALHACDTATDDALARAVGWEAALVLAAPCCHHDIAAQLRRGEPPAPYTSLVRDGILRERFADTLTDALRALLLRQRGYRVDVMEFVDSQHTPRNTLLRAVRTGGAQSAQEYDDLVAAWGVRPRLGELLGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDW5</accession>
    <name>A0A0Q8VDW5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Multidrug ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_10650</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894794.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52861">
        <property type="protein sequence ID" value="KRC52861"/>
        <property type="gene ID" value="ASE19_10650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="643917at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="171"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="267"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="37"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="397"/>
            <end position="631"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="430"/>
            <end position="437"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC52861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="652" mass="71333" checksum="64A361EF4ABF15FB" modified="2016-01-20" version="1">MRPSAVVTHLTSEDLAQREPVLPRIARLLRPYRVQIALVLVAVVVAASLSAVGPFLTRAVFDNALFPLDGSEPDLGLLAWLVGGLCAIPVVVALIGIFQVWLTSTVGNSAMADLRGDLFEHLQKMELAFFTATKTGAIQSRLANDVAGVRTVLTDTASTILQNTVTVGAAIVSMVVLSWQLTLITLFVMPLFVLMQMRVGRVRQRLARRTQESLSDMTAITEEALSVSGILLSKAFNRGDSEVARYRGANRRQTRLQVEQAMTGRTFFAVVQTFFAITPAFLYLFSGWLITGGTPLGEDTMTAGTLVAFTTLQSRLQMPLLQLMRVTLDVQTSLALFRRIFEYLDLQPAITERPGAVALDPAQLRGRVELREVSFRYPEPRALSGSPAGDRFGDSGIRIGDDTDRPETSGWALEEVSLVVEPGQLAAIVGPSGSGKTTATYLVPRFYDVTEGAVLIDGHDVRDLTLSSLADAVGMVTQEPYLFHGTIRDNIAYARPDATAEQIEQAARDANIHDRIMGFPEGYETITGERGYRLSGGEKQRLAIARVLLKDPAILILDEATSALDNETERLVQEALERATRSRTTIAIAHRLSTIQSADVIFGLEDGRIVEQGTHHQLIAAGGLYKRLYDEQFSREPHGRPQCDSRRADVSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE92</accession>
    <name>A0A0Q8VE92_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10850</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894829.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52897">
        <property type="protein sequence ID" value="KRC52897"/>
        <property type="gene ID" value="ASE19_10850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1015470at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="25"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="449"/>
            <end position="525"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="542" mass="59481" checksum="4D254656E4B79D48" modified="2016-01-20" version="1">MTELSYAAGETTTPLLDETIGARLEHTVGLWPDREALVEVASGRRWTWREFDHAVDQVARGLIASGIAQGDRVGMWAPNCAEWTIVQLAAAKAGAVLVNVNPSYRTHELAYAVNQSGLRLLLTVTSFRTSDYRGMVEEVTSKGEVPGLERTVYVDTDDWQALVAAGEQLPADALTERQRALLPDDPINIQYTSGTTGFPKGATLSHRNILNNGYFVTELIGFSEQDRLCIPVPFYHCFGMVMANLGCITHGATMVIPAPGFDPAITLQAIEDERCTAVYGVPTMFIAMQNAPDFAGHDLSTLRTGIMAGSICPVEVMKRCIDDMHMAEVSIAYGMTETSPVSCQTRADDDLDRRTSTIGRAAPHVEIKIVDPATGETVPRGEPGEFCTRGYSVMLGYWNDEAKTAEAIDADGWMHTGDLAVMREDGYCNIVGRIKDMVIRGGENIYPREIEEFLYTHPDVEDVQVVGVPDEKYGEELCAWVRMRAGAPALDAEGVKAFATGKLAHYKIPRYVLVVEEFPMTVTGKVRKVEMRERSTELLGLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEG3</accession>
    <name>A0A0Q8VEG3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_08585</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895537.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54105">
        <property type="protein sequence ID" value="KRC54105"/>
        <property type="gene ID" value="ASE19_08585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="6"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="121"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="229"/>
            <end position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="385" mass="42116" checksum="AD83BA5D0BA3EB5D" modified="2016-01-20" version="1">MAALSAEEREVVALVREWVDREVRGNVQELEHANEYPEKWIEQMKELGIYGLAIPEPYGEVAVSMPCYVEVTTELARGWMSLAGAMGGHTVVAKLILQFGTEEQKQAYLPRMATGELRATMALTEPGGGSDLQAMKTVARKQGDEYVVNGSKTWISNARRSGLIALLCKTDPDARPRHQGISILLVEHGPGLTVSRDLPKLGYKGVESCELAFDDFRTPTSSLLGEAEGEGFAQMMRGLETGRLQVASRALGVGQAAFDDALAYAQVRESMGKPIWQHQSIGNYLAEMATKLTAARQLTLFAAEKYDAGERCDMEAGMAKLYASEVGMEIALNAVRIHGGYGYSTEYDVERYFRDAPLMIVGEGTNEIQRNVIAAQLVKRGGLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEK3</accession>
    <name>A0A0Q8VEK3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_11395</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894923.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52993">
        <property type="protein sequence ID" value="KRC52993"/>
        <property type="gene ID" value="ASE19_11395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1717935at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005384">
        <property type="term" value="F:manganese ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030026">
        <property type="term" value="P:cellular manganese ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008217">
        <property type="entry name" value="Ccc1_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31851">
        <property type="entry name" value="PTHR31851"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01988">
        <property type="entry name" value="VIT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="28"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="58"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="160"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="188"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="218"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="243" mass="25087" checksum="F0F9258DC43AD2F5" modified="2016-01-20" version="1">MDAGTAGEAIGPHDDEPHQEGLNNRLNWLRAGVLGANDGIVSTAGIVLGVAGATTDRTAILIAGIAGLAAGAMSMGAGEYVSVSTQRDSEEALLAKERRELREDPEDELAELAGLYVDKGLEPDLALEVAKQLTEKDALAAHAEVELGIDPDDLTNPWNAAFASMLSFTLGALLPLLTILLASQDLRVAVTVTAVVAALALTGWASARFGYGSPRMAVLRNVLGGLLAMAVTHGIGQLVGTQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEN2</accession>
    <name>A0A0Q8VEN2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">L-aspartate oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895467.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54035">
        <property type="protein sequence ID" value="KRC54035"/>
        <property type="gene ID" value="ASE19_08155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1462690at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046366">
        <property type="entry name" value="MPAB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018713">
        <property type="entry name" value="MPAB/Lcp_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36124">
        <property type="entry name" value="PTHR36124"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09995">
        <property type="entry name" value="MPAB_Lcp_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MPAB_Lcp_cat" evidence="1">
        <location>
            <begin position="46"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="305" mass="34551" checksum="4FA0056094232CB6" modified="2016-01-20" version="1">MAKSLWRDRNDALDPETDYVEIYQNLALYEFTWDLTQSLSFALFRTYAVPSIGRLLDRTGAFTQQVQKRYDDTALLLEAPFVHGFDSASGKAALRRINQMHKAYDISNDDFRYVLATFVVVPKRWLDDYGWRPLSDTELRASVNYYRALGRRMGIKDIPETYDAFMHLMDDYERAHFDFDAGGRRVADATLTLMTTFYPRPLRKPVEVFSRALMDEPLLDAFAYVDPGPLARRVSRAAMRARARLLRHTPSNRTPTFTADLPRIKSYPDGFALGDLGTFPVPGVGGCPVRHASDTTPASAPSATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEQ7</accession>
    <name>A0A0Q8VEQ7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DAO domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11900</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895015.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53085">
        <property type="protein sequence ID" value="KRC53085"/>
        <property type="gene ID" value="ASE19_11900"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="36"/>
            <end position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="433" mass="46235" checksum="872C09EF375CF58E" modified="2016-01-20" version="1">MQAFAAVRDESSTATAEVDREDWFEMAQGNTLASADVVVVGAGLVGLCTAWELRKRGFTVAVVEQRFPGYGASSRNAGGLWLQTRRRGLELTLARAGREKYGEYIDVLGDVFDLRRDGGLFFFENDEQRAVIERYVGDRQDAGLDIEMVSRDVAAELSPVLPETAIGAAFCRDDAQIDSLGFVNALENACIRHGIQILRNCSVLSSLRDGDAVTGVRTVRGEVHAGGVVWAVGAWAVMLRTEGIDLPIETTRMGQLMTQPLETATSPPLRGPRGVHGCGALLDLPDFDPGLFAPPAYGEDNSVDDGEPASALEYDDTISLNHGGSLYIGHSIDGRGSLNPHISLNATRAMTAVAMDRFDRYADFGVTGLWAGLGSETPDNLPIVGRLDGAYVNVGHMWGVASAPICAQVVAESIAGEDSDFAAGLSPQRAMLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF90</accession>
    <name>A0A0Q8VF90_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cyclopropane-fatty-acyl-phospholipid synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12960</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CFA/CMAS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895726.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53264">
        <property type="protein sequence ID" value="KRC53264"/>
        <property type="gene ID" value="ASE19_12960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1518440at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003333">
        <property type="entry name" value="Mycolic_cyclopropane_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003085">
        <property type="entry name" value="CMAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR003085-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="424" mass="46920" checksum="24DDF997B69C08A2" modified="2016-01-20" version="1">MTVTDTRATAPWTSLQAAPEGRISARIAERLFRSAVSRLHVTVRLEHTDRPAEVLGLGGPAVVVHRPDELFARIGRDKLIGFGESYMTGAWSEDGQLGDGTLGDFLTVLAADVARLVPPALQRLRAFVTPRLPRSHRGTRENTQANVAHHYDLSNDLFAAFLDPTLSYSAALFEDLESALTEDFAAAQHRKIDRLLDQAGVGAGTRLLEIGTGWGELAIRAAARGAEVRSITLSVEQQQLARERIAAAGHADRVVVDLCDYRALLDEPAGRYDAVVSVEMIEAVGWEFWPTYFRTLDHVLAPGGTVAIQAITMPHDRMLATRSTHTFITKYIFPGGALPSVRAIRETVEEHTTLRIVDELAFGAHYAPTLQRWDRAFLGARERVAALGFDETFVRMWHFYLEYCRGGFAAGYIDDHQLTFTREA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFE8</accession>
    <name>A0A0Q8VFE8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glutathione peroxidase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_13230</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the glutathione peroxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895774.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53312">
        <property type="protein sequence ID" value="KRC53312"/>
        <property type="gene ID" value="ASE19_13230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1635499at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004602">
        <property type="term" value="F:glutathione peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00340">
        <property type="entry name" value="GSH_Peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000889">
        <property type="entry name" value="Glutathione_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029759">
        <property type="entry name" value="GPX_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11592">
        <property type="entry name" value="PTHR11592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00255">
        <property type="entry name" value="GSHPx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000303">
        <property type="entry name" value="Glutathion_perox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01011">
        <property type="entry name" value="GLUTPROXDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00460">
        <property type="entry name" value="GLUTATHIONE_PEROXID_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51355">
        <property type="entry name" value="GLUTATHIONE_PEROXID_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 5 7" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="6">
        <location>
            <begin position="1"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000303-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="17395" checksum="FC747D7AD0A62887" modified="2016-01-20" version="1">MTTLHDFSATAIDGKPVEFSSYDGKVVLVVNTASKCGFTPQFEGLQELYDTYGDRGFTVLGFPCDQFANQELDGDDEIAGFCQKNYGVTFPMFSKIDVNGDETHPVYQWLKSQKGGLIGGGIKWNFTKFLVGKDGQVIGRYAPTTKPEKIAGDIEKALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG33</accession>
    <name>A0A0Q8VG33_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Beta sliding clamp</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_14035</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for processivity of DNA replication.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Forms a ring-shaped head-to-tail homodimer around DNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the beta sliding clamp family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897050.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53453">
        <property type="protein sequence ID" value="KRC53453"/>
        <property type="gene ID" value="ASE19_14035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1040142at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009360">
        <property type="term" value="C:DNA polymerase III complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00140">
        <property type="entry name" value="beta_clamp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001001">
        <property type="entry name" value="DNA_polIII_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022635">
        <property type="entry name" value="DNA_polIII_beta_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022637">
        <property type="entry name" value="DNA_polIII_beta_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022634">
        <property type="entry name" value="DNA_polIII_beta_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30478">
        <property type="entry name" value="PTHR30478"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00712">
        <property type="entry name" value="DNA_pol3_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02767">
        <property type="entry name" value="DNA_pol3_beta_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02768">
        <property type="entry name" value="DNA_pol3_beta_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000804">
        <property type="entry name" value="DNA_pol_III_b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00480">
        <property type="entry name" value="POL3Bc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00663">
        <property type="entry name" value="dnan"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7 9" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="5 9 13" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9 13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA_pol3_beta" evidence="10">
        <location>
            <begin position="1"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="DNA_pol3_beta_2" evidence="11">
        <location>
            <begin position="126"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="domain" description="DNA_pol3_beta_3" evidence="12">
        <location>
            <begin position="252"/>
            <end position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR000804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC53453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="380" mass="39942" checksum="FC7B18080EF8F5DB" modified="2016-01-20" version="1">MKFRVDRDVLADAVAWAARSLPVRPSAPVLAGLLIEANDEGLVLSTFDYETSARATLSAEVHDEGKALVSGRLLADICRSLPNKPVELTLDGARVQLTCGSSRFSLQTMPVEDYPSIPEMPAATGTVPSDAFAHAVAQAVTAAGRDDMLPVLTGVRIEIEGDTIALLATDRFRLSQRELTWNPGTPDATVAALVPAKVLGDTAKALTAGPEVTIALSASGSGDGIIGFEGTGPGGVRRTTTRLLDGEFPKVRSLFPSEKLTIAKIDRAELIESVKRVSLVADRNTAVQLSFRDGALILDAGSGDDAQASESVAAQIEGDDLVTGFNPNFLLDGLGAIDESVVELAFTQASKPVVISGTNDESGEQGGSFRYLLMPRRLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGU3</accession>
    <name>A0A0Q8VGU3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_12485</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895113.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53186">
        <property type="protein sequence ID" value="KRC53186"/>
        <property type="gene ID" value="ASE19_12485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="276189at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007343">
        <property type="entry name" value="Uncharacterised_pept_Zn_put"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30168">
        <property type="entry name" value="PTHR30168"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04228">
        <property type="entry name" value="Zn_peptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360021" evidence="5">
        <location>
            <begin position="31"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="456" mass="48269" checksum="7D05342F8C9B0AD9" modified="2016-01-20" version="1">MRTALTTLPVLLALGLLAGCGGGGGGTASTDEKSSDPTASPAAAIEISGDASAPVNALAIKAIGDLQSFWKDAFPTLYGTDYTDVDGGLYALTPDSTEGPECASSYADVQGNAFYCKLDDSVAWDADELLPDLREKYGDFVIPIVLAHEWGHALQQRSGFFDQNQLTVSSELQADCFAGAWAQHAQESGAFDVTAADLDTALAGILDLRDTPGTNSMDPSAHGSGFDRVSAFQDGFDQGVARCKGHADGEPAVLELPFNDAADEARGGDAPYDQIISGVPYDLEDFWSQLYPELADGERWTPLKGYEPFDPANAPPCGDADTSTYVLFYCVPDDYVGFDNVTDMPRIYEQGGDYAVATLLATQWGLAALARAGVEVDEKEATRITDCFAGGYTASVILHNRAKTSSYSISPGDLDEGIKALLVFRGPGDSDRQGAGYDRVKAFRQGVLDGASSCLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGU8</accession>
    <name>A0A0Q8VGU8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribosomal RNA small subunit methyltransferase H</fullName>
            <ecNumber evidence="6">2.1.1.199</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">16S rRNA m(4)C1402 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">rRNA (cytosine-N(4)-)-methyltransferase RsmH</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rsmH</name>
        <name evidence="7" type="ORF">ASE19_02405</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>cytidine(1402) in 16S rRNA + S-adenosyl-L-methionine = H(+) + N(4)-methylcytidine(1402) in 16S rRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42928"/>
            <dbReference type="Rhea" id="RHEA-COMP:10286"/>
            <dbReference type="Rhea" id="RHEA-COMP:10287"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74506"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="EC" id="2.1.1.199"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the methyltransferase superfamily. RsmH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.199" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892716.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56698">
        <property type="protein sequence ID" value="KRC56698"/>
        <property type="gene ID" value="ASE19_02405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1272633at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071424">
        <property type="term" value="F:rRNA (cytosine-N4-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070475">
        <property type="term" value="P:rRNA base methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01007">
        <property type="entry name" value="16SrRNA_methyltr_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002903">
        <property type="entry name" value="RsmH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023397">
        <property type="entry name" value="SAM-dep_MeTrfase_MraW_recog"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11265">
        <property type="entry name" value="PTHR11265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01795">
        <property type="entry name" value="Methyltransf_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004486">
        <property type="entry name" value="MraW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81799">
        <property type="entry name" value="SSF81799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00006">
        <property type="entry name" value="TIGR00006"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="5 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 7" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="6">
        <location>
            <begin position="37"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="330" mass="35727" checksum="787321BDCF28162E" modified="2016-01-20" version="1">MSSPRHVPVLLDRVVSLLAPALDRDGAVLVDCTLGLGGHSEAVLERCPKARVIGIDRDTQALAMSRERLASYGDRFTGVHAVYDEIADVVADQGLDEVAGVLFDLGVSSMQLDLPERGFAYAVDAPLDMRMDGSTGPTAADVLNTYTAPELTRVLREYGEEKMARRIADAVVRERAVEPFVNSGRLVALLYDAIPAPARRTGGHPAKRTFQALRMEVNDELAVLRRAMPAAVDVIGVGGRVVVESYHSLEDRLVKRVFADATRLDVPDDLPFVPEGAEPSYRLVTRGAEQANAEEIEENPRAASVRLRAIERIRSTSSSRSGSTQGKGAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGV1</accession>
    <name>A0A0Q8VGV1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Pyridoxal phosphate homeostasis protein</fullName>
            <shortName evidence="1">PLP homeostasis protein</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02340</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56686">
        <property type="protein sequence ID" value="KRC56686"/>
        <property type="gene ID" value="ASE19_02340"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1423012at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02087">
        <property type="entry name" value="PLP_homeostasis"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011078">
        <property type="entry name" value="PyrdxlP_homeostasis"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10146">
        <property type="entry name" value="PTHR10146"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004848">
        <property type="entry name" value="YBL036c_PLPDEIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00044">
        <property type="entry name" value="TIGR00044"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01211">
        <property type="entry name" value="UPF0001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ala_racemase_N" evidence="4">
        <location>
            <begin position="14"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="1 2">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR004848-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="235" mass="24578" checksum="ED0040A8ABE47FB2" modified="2016-01-20" version="1">MAAMSRLEELRTRLAAVHERIARAAEGAGRAPDEVDLVVVTKFFPASDVRLLAELGVTDVGENRHQEAEAKAADCADLALRWHFIGGLQSNKAAAVARYADVVESVDRSSLVGRLDRGAGESGRQVDVLLQVSLDPPGSDHRAGADPADLVALADEVAAASSLSLRGLMAVAPLGEDPATAFDRLRAIRSTFLEQHPDATRLSAGMSGDLEAAVTAGATHVRVGSAVLGSRQSVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGZ5</accession>
    <name>A0A0Q8VGZ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04600</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894321.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54761">
        <property type="protein sequence ID" value="KRC54761"/>
        <property type="gene ID" value="ASE19_04600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041347">
        <property type="entry name" value="MftR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17754">
        <property type="entry name" value="TetR_C_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="21"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="44"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="217" mass="23442" checksum="ED0D084A68CCC20B" modified="2016-01-20" version="1">MVIEQFDLDGSRPRGVRLPRRERRAQLLAAALEVFVAQGYHAAAMDDIAERAGVSKPVLYQHFPGKLELYLAILDAACDAIIDNCRKALDSTHDNKQRVAATIDAFYAYVGHDTGAFRLVFESDLTNEPAVRGHIDRVTTECADLIASVIAEDTSLPPAASQLLAVALVGMAQVSARFWTTDTDGGLAGLTRDQATTLVSGLAWRGIGGYPRTDEQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHD2</accession>
    <name>A0A0Q8VHD2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Polyprenyl synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02470</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the FPP/GGPP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56708">
        <property type="protein sequence ID" value="KRC56708"/>
        <property type="gene ID" value="ASE19_02470"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00685">
        <property type="entry name" value="Trans_IPPS_HT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000092">
        <property type="entry name" value="Polyprenyl_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033749">
        <property type="entry name" value="Polyprenyl_synt_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00348">
        <property type="entry name" value="polyprenyl_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="SSF48576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00723">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00444">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="362" mass="38068" checksum="1804E8C4EF66885C" modified="2016-01-20" version="1">MTEQRWDPTSFRAEVQATLDAFLAEQTDRLAPLGADAARLLTEARATVSGGKRFRAAFCQWGYAAVAGVPSGTDAAAVLRASAALELLHASALVHDDLMDASDTRRGRAATHRGFEAEHRADGWRGDPVQYGAAAAILLGDLLLSWADELVRRCGLGWERVGPALEVFDLCRSEVIAGQFLDVSVQARGRASVAQATTVLRYKSAKYSIERPLHVGAALAGADAATLDRLTAFGLPLGEAFQLRDDLLGVFGDPATTGKPAGDDLVEGKRTVLVALAIDAASPEDAARLDAALGTPLGEAEIAGLRAIIDGCGAREQVETMIDDLATQAVGALRAGQAEEGWDAGACQVLEQLATAATRRIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHD9</accession>
    <name>A0A0Q8VHD9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07130</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895285.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53853">
        <property type="protein sequence ID" value="KRC53853"/>
        <property type="gene ID" value="ASE19_07130"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="152"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="166"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="199" mass="20497" checksum="35E4FC985B734DBD" modified="2016-01-20" version="1">MPKLDLPKLEIPKLEIPSIDLKAIDLPELPQAAAKPIYAGVGATDLAVEKVVAYVADVQAKVTARVTEVQKDVTARVASVQSSVKGFELPETKSLQGKAEAKLAELQADAKALPAKVQSSVKGAYDENVATATALYADLAKRGEGVVVKLRSGEAPKAPAKKAPAAKKAPAKKAPAKKAPAKKAPAAKKAPAKKAPAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHK6</accession>
    <name>A0A0Q8VHK6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">DNA-directed RNA polymerase subunit beta</fullName>
            <shortName evidence="6">RNAP subunit beta</shortName>
            <ecNumber evidence="6 8">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">RNA polymerase subunit beta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Transcriptase subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpoB</name>
        <name evidence="15" type="ORF">ASE19_09695</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6 8">
            <text>a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the RNA polymerase beta chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="6 8"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894633.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52695">
        <property type="protein sequence ID" value="KRC52695"/>
        <property type="gene ID" value="ASE19_09695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="9601at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032549">
        <property type="term" value="F:ribonucleoside binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00653">
        <property type="entry name" value="RNA_pol_B_RPB2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.270.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01321">
        <property type="entry name" value="RNApol_bact_RpoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042107">
        <property type="entry name" value="DNA-dir_RNA_pol_bsu_ext_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019462">
        <property type="entry name" value="DNA-dir_RNA_pol_bsu_external_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015712">
        <property type="entry name" value="DNA-dir_RNA_pol_su2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007120">
        <property type="entry name" value="DNA-dir_RNAP_su2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037033">
        <property type="entry name" value="DNA-dir_RNAP_su2_hyb_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010243">
        <property type="entry name" value="RNA_pol_bsu_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007121">
        <property type="entry name" value="RNA_pol_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007644">
        <property type="entry name" value="RNA_pol_bsu_protrusion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007642">
        <property type="entry name" value="RNA_pol_Rpb2_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037034">
        <property type="entry name" value="RNA_pol_Rpb2_2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007645">
        <property type="entry name" value="RNA_pol_Rpb2_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007641">
        <property type="entry name" value="RNA_pol_Rpb2_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014724">
        <property type="entry name" value="RNA_pol_RPB2_OB-fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20856">
        <property type="entry name" value="PTHR20856"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04563">
        <property type="entry name" value="RNA_pol_Rpb2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04561">
        <property type="entry name" value="RNA_pol_Rpb2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04565">
        <property type="entry name" value="RNA_pol_Rpb2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10385">
        <property type="entry name" value="RNA_pol_Rpb2_45"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00562">
        <property type="entry name" value="RNA_pol_Rpb2_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04560">
        <property type="entry name" value="RNA_pol_Rpb2_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02013">
        <property type="entry name" value="rpoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01166">
        <property type="entry name" value="RNA_POL_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6 8" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="3 6 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNA_pol_Rpb2_1" evidence="12">
        <location>
            <begin position="26"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_2" evidence="11">
        <location>
            <begin position="158"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_3" evidence="13">
        <location>
            <begin position="430"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_45" evidence="14">
        <location>
            <begin position="508"/>
            <end position="574"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_6" evidence="9">
        <location>
            <begin position="635"/>
            <end position="1055"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_7" evidence="10">
        <location>
            <begin position="1057"/>
            <end position="1131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF04560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF04561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF04563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF04565"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF10385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC52695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1169" mass="129660" checksum="BD04694648D4C534" modified="2016-01-20" version="1">MAARTTPGKSRISFAKISEPLALPQLLSLQTDSFDWLVGNEAHKARIEARIASGVDATFKSGLEEIFEEISPIEDFSETMSLSFENPVFYDPKYTVDECKEKDLTYSAPLYVSAEFTNNETGEIKGQTVFMGDFPLMTPKGTFVINGTERVVVSQLVRSPGVYFERTADKTSDKDIYTAKLIPSRGAWLEFEIDKRDMVGVRLDRKRKQNVTVLLKALQAIAEDTGEEYDYDAVMADLRQYESIQLTEEKDNTSGPDDALLDIYRKLRPGEPPTREAALTLLRNYYFNPKRYDLAKVGRYKVNKKLGQQEAFDQQTMTIADMVATIKYIVQLHNGDEFVQAIGGEVRKDGDDKDLPVSADDIDHFGNRRMRTVGELIQNQLRTGLARMERVVRERMTTQDVEAITPQSLINIRPVVAALKEFFGTSQLSQFMDQTNPIAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGPNIGLIGSLASYGRINPFGFVETPYRKVVNGTVTDQIDYLTADDEDKYVIAQANAVLDKNNKFAEDRVLVRLRQGEVSEIPGDEVDYMDVSPRQMVSVATALIPFLEHDDANRALMGANMQRQAVPLIRSDSPIVGTGIEFRAAVDAGDVVVATAAGVVKSVSADLVETMNDDGSYSSYRLAKFKRSNQGTCINQRPLVEAGDRLEVGSPIADGPCTDNAEMALGTNLLVAFMPWEGHNYEDAIILSQRLVQEDVLTSIHIEEHEVDARDTKLGPEEITRDIPNVSEEMLADLDERGIIRIGAEVRDGDLLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGETGTVIGVRVFDREEGDELPPGVNQLVRVYVAQKRKISVGDKLAGRHGNKGVIAKILPVEDMPFMEDGTPVDVVLNPLGVPRRMNIGQILELHLGWLGKQGWHIDADLKNEDWAKRLTSIGVEEAAPNTKVATPVFDGAREDEITGLLGQTLPNRDGVRMVKETGKASLFDGRSGEPFKDPVSVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMEAYGAAYALQELLTIKSDDVPGRVKVYEAIVKGENIPDSGIPESFKVLVKEMQSLCLNVEVLSQDGTPIEMRDSDEDVFRAAEELGIDLSRRENPSVEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHL3</accession>
    <name>A0A0Q8VHL3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Barstar domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02480</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the barstar family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892728.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56710">
        <property type="protein sequence ID" value="KRC56710"/>
        <property type="gene ID" value="ASE19_02480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047621at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000468">
        <property type="entry name" value="Barstar"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035905">
        <property type="entry name" value="Barstar-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01337">
        <property type="entry name" value="Barstar"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52038">
        <property type="entry name" value="SSF52038"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Barstar" evidence="2">
        <location>
            <begin position="41"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="137" mass="14664" checksum="A6A0BB99803F0597" modified="2016-01-20" version="1">MSGLAAVLAGRRTAGVHRWESALDVDDVRAATEHAGWAFAHLDGAGRESLPDVLRALGEALAFPAHYGQNLDALNDCLRDLAGPTVLLWDAWGGFARADLRWFPVVVDVLAHRGDDDPPIEVLLRGPGPDDAVPLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHL5</accession>
    <name>A0A0Q8VHL5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Binary_toxB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01965</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917928.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56623">
        <property type="protein sequence ID" value="KRC56623"/>
        <property type="gene ID" value="ASE19_01965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1927757at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035088">
        <property type="entry name" value="PA_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028974">
        <property type="entry name" value="TSP_type-3_rpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03495">
        <property type="entry name" value="Binary_toxB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103647">
        <property type="entry name" value="SSF103647"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Binary_toxB" evidence="2">
        <location>
            <begin position="62"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="17906" checksum="B7D3A1AB14F99EBE" modified="2016-01-20" version="1">MQATNGCTTGHTSPLRRDTDGDGLVDGPEAKGITIRQVVFTNVGRPRRGKAIGTVRTNPCAKDTDRDGLTDRQEVVGVRINQRVQRYKRDGGWYTITTRRSNPLKKDTDGDGLTDKQEVTGSANRRFKMHRTDPTVADTDWGGIRDGREIRVRRTDPTRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHT0</accession>
    <name>A0A0Q8VHT0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Abasic site processing protein</fullName>
            <ecNumber evidence="7">3.4.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_03515</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the SOS response-associated peptidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.-.-" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892901.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56884">
        <property type="protein sequence ID" value="KRC56884"/>
        <property type="gene ID" value="ASE19_03515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1718602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006974">
        <property type="term" value="P:cellular response to DNA damage stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018142">
        <property type="term" value="P:protein-DNA covalent cross-linking"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1680.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003738">
        <property type="entry name" value="SRAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036590">
        <property type="entry name" value="SRAP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13604">
        <property type="entry name" value="PTHR13604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02586">
        <property type="entry name" value="SRAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143081">
        <property type="entry name" value="SSF143081"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0190">Covalent protein-DNA linkage</keyword>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 7" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="248"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU364100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="269" mass="29979" checksum="C5526E774DE0C70E" modified="2016-01-20" version="1">MCGRYASSRSPEDIAEEFEVLDPRLERAIAPSWNVAPTDEVYAVMERVPRTDDDPDRTGDPVRQLRALRWGLVPSWAKDEKIGSRMINARMETVAEKPAFRKAFASRRCIVPADGYFEWYETDRKGAKGLGSKKGRVKQPFFITPEDGSILAMAGLYEIWRDRSVPEDAEGAFRWTCTVLTTEATDDLGRIHDRMPLLVGRDRRSEWLDPRHTVADLPALLTPAQQAGLTAYPVSAAVGNVANNGPELVEPLPLEGDLPDEDDAQGTLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHV6</accession>
    <name>A0A0Q8VHV6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03550</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56891">
        <property type="protein sequence ID" value="KRC56891"/>
        <property type="gene ID" value="ASE19_03550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1196738at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="72"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="335" mass="35925" checksum="D4B02082BA2A70A4" modified="2016-01-20" version="1">MKSVGRHALKGSFVAARAGGKVAVHGVRAGIRRTQRFPALPDLPEGRYVDLPGRGEVFVVDTGAPVGHPDAPVLLLFHGLATTSYLTWFSTLGELRADHRIVMLDQRWHGRGIVSERFSLEDCVDDAALVLDALGIDRVVAVGYSMGGALAQTFWRRHGERTAGLVLASTAACWKENLGDAMFYPVLGAANARFRHRYRARVQQVRSSLADVAVAGAEMSTWAWAEFRSTSAWAMPEVLGTLGGFDARPWLGEIDVPTAVVVTARDHAIATARQRAMAAAIPGATVHEAPGGHASVVFDVQRWRPVFLAAVAEVVERSAGSSVEQGEQGSASLVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHZ2</accession>
    <name>A0A0Q8VHZ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Iron ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_08125</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895461.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54029">
        <property type="protein sequence ID" value="KRC54029"/>
        <property type="gene ID" value="ASE19_08125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1783638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="68"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="103"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="144"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="199"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="244"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="292"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="351"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="390"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="421"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="477"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="519"/>
            <end position="543"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="69"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="345"/>
            <end position="543"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="554" mass="58039" checksum="C604BC184148E702" modified="2016-01-20" version="1">MVRHHLALSARNARRGAYVALALVPVAVVAVFFVLPVGAMLHRGLWPEGDFAPGAVLDVLRRPRTGRVLWFTLWTSTVATAASVALGLPAAYVLHRLRFPGRAVVRAALLVPFVLPTVVVGLAVRELIAPSGILGFLGLDGTAVAILIGLVFFNVAVVIRTVGVAWESLDRRPGEAAAALGATPWQVFRTVTFPALRPAIVSAASVVFLFCATAFGVVLVLGGVRYSSVETEIYLLTADLLDLPAAAALSLVQMVAVVLLLIVVGRLRSVPDPTVRRSVAAPTRPRPRDVPAIAVTAATLAAVALPIAALVVGSVRRDGHWTLDHYRALGGSADGLFEISVVDALSASLRIAVDATWMSLLLGLVVAFVVTRKVRSRAGRRARTVLDGFFMLPLGVSAVTLGFGFLIALDQPPIDLRSSPLLVPIAQALVALPIVVRTLVPVLAGIDDRQRQAAASLGAGPLRAIATVDLAVVWRPLLAAAGFAFAVSLGEFGATSFIVRPAEPTLPVVIYRLLGHPGPLNYGTALAASVVLAVVTAGVILVVERLRVPGTGAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI18</accession>
    <name>A0A0Q8VI18_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF58 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05530</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894166.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54915">
        <property type="protein sequence ID" value="KRC54915"/>
        <property type="gene ID" value="ASE19_05530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="848990at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002881">
        <property type="entry name" value="DUF58"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01882">
        <property type="entry name" value="DUF58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF58" evidence="1">
        <location>
            <begin position="189"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="429" mass="45866" checksum="72F29645E7B014EF" modified="2016-01-20" version="1">MSGWHPTHAHLRAVVAGFGLLVAGLVLGRVDAIVLATPLLLVALAGAQSRPSVVPVLEGPQGALAVHEGEDVVWSATISGLPAGGSVAALHPGQRWLEVEPETGQVVAADDGLATTSIGLRPTRWGWRTLGAPAVTGYDAWAAWRWVADRPQPLRLTVLPSTEQPDTTAPAPHPYGLVGQERAVRLGEGTELAKVRPFEPGDRLRRIHWPTSARTGTLHVTATHADEDAHVVLLLDAVNDVGSSGGLVGERSSMDLAVRAAAVLAEHFLRRGDRVGLRVFGDWRVSFLPSSSGRHQLRRLLNVLSVVEPGTARGEDALAARQGLGAGTLAILLSPLVEPASTQQVAMLTSAGIEVIVVDTLPAELVTGDRGRSPEEQLAWRLRMLQRRLERDRMASLGIPVVTWTGPHSIDKVLRDLARRSATPRLVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI34</accession>
    <name>A0A0Q8VI34_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04080</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56987">
        <property type="protein sequence ID" value="KRC56987"/>
        <property type="gene ID" value="ASE19_04080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1978603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360063" evidence="2">
        <location>
            <begin position="22"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="105" mass="10018" checksum="D19C8E7F1A4BCEDB" modified="2016-01-20" version="1">MLAGAACAPILVLVGAGGAFAGEVKGPPGDDGFATGGWTPIAGYRANSICAFSGLNAYHPGKEGVYAGHVQSYGAIVSQGGKGEAPSPGEACNGHTGELAGGGGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ81</accession>
    <name>A0A0Q8VJ81_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Assimilatory sulfite reductase (ferredoxin)</fullName>
            <ecNumber evidence="5">1.8.7.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">ASE19_12515</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <reference evidence="18 19" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the reduction of sulfite to sulfide, a step in the biosynthesis of sulfur-containing amino acids and cofactors.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>3 H2O + hydrogen sulfide + 6 oxidized [2Fe-2S]-[ferredoxin] = 7 H(+) + 6 reduced [2Fe-2S]-[ferredoxin] + sulfite</text>
            <dbReference type="Rhea" id="RHEA:23132"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17359"/>
            <dbReference type="ChEBI" id="CHEBI:29919"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="EC" id="1.8.7.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 12">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Nitrogen metabolism; nitrate reduction (assimilation).</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.8.7.1" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895118.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53191">
        <property type="protein sequence ID" value="KRC53191"/>
        <property type="gene ID" value="ASE19_12515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1128731at2"/>
    <dbReference type="UniPathway" id="UPA00653"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008942">
        <property type="term" value="F:nitrite reductase [NAD(P)H] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050311">
        <property type="term" value="F:sulfite reductase (ferredoxin) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042128">
        <property type="term" value="P:nitrate assimilation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007419">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041854">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005117">
        <property type="entry name" value="NiRdtase/SiRdtase_haem-b_fer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036136">
        <property type="entry name" value="Nit/Sulf_reduc_fer-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012744">
        <property type="entry name" value="Nitri_red_NirB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017121">
        <property type="entry name" value="Nitrite_Rdtase_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006067">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006066">
        <property type="entry name" value="NO2/SO3_Rdtase_FeS/sirohaem_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041575">
        <property type="entry name" value="Rubredoxin_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04324">
        <property type="entry name" value="Fer2_BFD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01077">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03460">
        <property type="entry name" value="NIR_SIR_ferr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18267">
        <property type="entry name" value="Rubredoxin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037149">
        <property type="entry name" value="NirB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00397">
        <property type="entry name" value="SIROHAEM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55124">
        <property type="entry name" value="SSF55124"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56014">
        <property type="entry name" value="SSF56014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02374">
        <property type="entry name" value="nitri_red_nirB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00365">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9 12" id="KW-0274">FAD</keyword>
    <keyword evidence="7 12" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-0349">Heme</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11 12" id="KW-0534">Nitrate assimilation</keyword>
    <keyword evidence="10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0883">Thioether bond</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="16">
        <location>
            <begin position="8"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="Rubredoxin_C" evidence="17">
        <location>
            <begin position="323"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="domain" description="Fer2_BFD" evidence="15">
        <location>
            <begin position="426"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="domain" description="NIR_SIR_ferr" evidence="14">
        <location>
            <begin position="564"/>
            <end position="625"/>
        </location>
    </feature>
    <feature type="domain" description="NIR_SIR" evidence="13">
        <location>
            <begin position="636"/>
            <end position="771"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012353"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRNR" id="PIRNR037149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF03460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF04324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF18267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="KRC53191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="854" mass="90930" checksum="3DD06A319F64C55B" modified="2016-01-20" version="1">MAPHLRKQLVVVGHGMVGHRFVQAAIERGLTETHDIVVLGEEPRPAYDRVALTSFFEVGAEALSYLPGGVYDDPRVTLRIDTEVVAMDATEQTVTLADGETLRYDELVLATGAAPFVPPVPGKDLGNVFVYRTIEDLEAIREASKGARAGAVIGGGLLGLEAANALHQLGVQTHVVEMAPRLMAVQVDDAGGATLKRHIEELGLTVHTGVMTELIDGDADGKVSGIKFKDEDTLPLDIVIFSAGIRPRDAIARAAGIETAERGGVLVDEQCRSSDEHVWAIGECAAPGGRMYGLVAPGYTMAEVVVDTLLGGEAGAFTGADMSTKLKLLGVDVASFGDAFGTTDDCLELVFADAVAGIYKKLVVLENATGGFELLGGILVGDASAYGVLRPLVGSGMALPDNPEELILPAGRGGGIEIGLPDEAQVCSCNNVTKGEILAAVSEDGGCDSPACVTKCTQAGATCGSCKTVVKKIVEDHFAATGKVVDRSLCEHFAMTRQELFEVVAVHGYNRFDDIIEGHGKGRGCDICKPAVASILASLLNHHVLDDSLATLQDTNDAYLANLQKNGTYSVVPRIPGGEITPDKLIVIGEVARDYGLYTKITGGQRIDLFGARMEDLPAIWKRLVDAGMESGHAYGKSLRTVKSCVGSTWCRYGVQDSVGMAIELELRYRGLRSPHKIKGGVSGCARECAEARSKDFGIIATEKGWNLYVCGNGGAIPAHAQLLAGDLSREDLIKYLDRFLMYYIRTADRLQRTSYWMEAIGGLDRIREVVVDDSLGLGTELEAAMDSHVDSYFDEWKATIEDPEKLARFVSFVNAPGTPDPNITFREERGQIQAANNEGPVSLGATIPVGGPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJK2</accession>
    <name>A0A0Q8VJK2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Molybdopterin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_23560</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893944.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57738">
        <property type="protein sequence ID" value="KRC57738"/>
        <property type="gene ID" value="ASE19_23560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="88184at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006655">
        <property type="entry name" value="Mopterin_OxRdtase_prok_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04879">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00926">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00490">
        <property type="entry name" value="MOLYBDOPTERIN_PROK_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="2 4" id="KW-0408">Iron</keyword>
    <keyword evidence="3 4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="5">
        <location>
            <begin position="3"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="10"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC57738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="742" mass="80858" checksum="1988D45BD00FD46F" modified="2016-01-20" version="1">MTTTWQKTACILCECNCGIEVQVEDRQLLRIRGDKSHPSSAGYTCEKPLRLDRYQNGTPRLTSPLRRRTDGSYEEIDWDTAISEIAQRLAAIRDEHGGDKIFFYGGGGQGNHLGAGYGQALQAALGVRYRSNALAQEKTGEMYVDGRLYGGHTKGDFEHAEVVVFIGKNPWQSHSFPRARPVLKEMAADPARTMVVIDPRVSETAAMADVHLQVRPGTDAWCLAALGAVLVQEDLVDHDFVRDHTTGAEPVLAAYREIDVADFAQRCGVDEELIRSTARRIAAAQSVCTYEDLGLQQAPHSTLGSYLNKMLWILTGNFAKQGAMFLHSMFAALAGGGGGGGSKVTPVTGARIISGLVPCNSIAEEIDTHHPDRFRAMWIDSVNPAHSLADSAGFRRAMRRLDLSVVIDIAMTETALEADYVLPASTQFEKWECTFFNVDFPENVFHLRAPLMDPLPGTLAEPEIYARVVRALNVVDEASLEPLRVAAEAGLASYADAFFAAVGADPRLMGLAGHVLYETLGPTLGDARGTAALWGVAQLCAMNQPGPVARAGFTGTGFEPGNQLFERILTGEAVVFTRDDHEQAWDYVRRPDRRFTIEIPELVERLRGLADEPSSWTSEEFPFVLSAGERRAFTANTIIRDPSWRRRDAGGALRISPDDAWSLSVRSGDSVRVVTEAGAAVATVEVTDTLQPGHVSLPNGLGVAHPDGTPGVAPNELTSLHHRDDIAGTPWHKYVPARLERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJL9</accession>
    <name>A0A0Q8VJL9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADH:flavin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08150</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895466.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54034">
        <property type="protein sequence ID" value="KRC54034"/>
        <property type="gene ID" value="ASE19_08150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1033671at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="1">
        <location>
            <begin position="6"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="domain" description="Oxidored_FMN" evidence="1">
        <location>
            <begin position="307"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="400" mass="43282" checksum="55F3EEF113B8956A" modified="2016-01-20" version="1">MSVPDVFSPVDLGPVRLRNRTVKAATFEGRTPDGVVTDELIAYHRAPAEGGVGLTTVAYLAVTPDGRTHHEQIVVSERTLPGLARLADEIHATGAGIAGQVGHAGPVANGRSNGVHAIAASRMPSPLSMQMIRSATEKDLTRVTKAYVDTARILVRAGFDVLELHMAHSYLISSFLAPALNRRRDRWGGPLERRAKLARQVARVVREEVGDAVAVTAKVSVSDGFAGGVTTEMAIELGRLLEADGHLDALQLSGGSSLMNPMYLFRGDAPVAEFAETMPPLVKWGMKTPAGRGFMKHYAFEEAYFRPKALEVRSALAMPLMLLGGINRVETMRQAMADGFDFVVMGRALLREPDLVNRLQAGEASRGICIHCNRCMPTIYTGTRCPEWAADQVIPIPRVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJX0</accession>
    <name>A0A0Q8VJX0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cyclopropane-fatty-acyl-phospholipid synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_23480</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CFA/CMAS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893930.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57724">
        <property type="protein sequence ID" value="KRC57724"/>
        <property type="gene ID" value="ASE19_23480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1518440at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003333">
        <property type="entry name" value="Mycolic_cyclopropane_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020803">
        <property type="entry name" value="PKS_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003085">
        <property type="entry name" value="CMAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00828">
        <property type="entry name" value="PKS_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_MT" evidence="3">
        <location>
            <begin position="166"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="436" mass="48317" checksum="ADEA99688B65F67C" modified="2016-01-20" version="1">MTGTHPGIAPTIESLFKGGLPLWFKAYDGSEAGPLDQPYGLELVNERGLSYIMTAPGDLGLARAYVAGDLVLHGVHPGDPYDAFSLLKDSTDFGVPKPSELLGVIRALGISHLVPPPPPPQEHLPAWRHRLEGLRSLSSPFGKWGRHSQERDADAIHHHYDVSNAFYEHVLGPSMTYTCAVYPTPDATLEEAQEHKYDLICRKLGLKEGDRLLDIGCGWGGMVRHAAKHYGVQVLGVTLSREQATWAQEEIKAQRLDHLAEVRHCDYRDVEEGEFDAVSSIGLTEHIGIANYPAYFSFIEGKLKPGGRMLNHCITRHDNIDKSTGAFIDRYVFPDGELAGSGTIVTAIEDARLEVQHHENFRLHYARTLAGWSKNLADNWDACVAETDEGTARVWGLYMTGSRIAFERNEIQLHHVLATKTLEGESGYPLRHDFGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKA0</accession>
    <name>A0A0Q8VKA0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">NAD-dependent succinate-semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_04430</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894348.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54733">
        <property type="protein sequence ID" value="KRC54733"/>
        <property type="gene ID" value="ASE19_04430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="384611at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="4">
        <location>
            <begin position="10"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="474" mass="49455" checksum="C1455091ABB19EAC" modified="2016-01-20" version="1">MNDLFIAGQWVPGSAGEFDVENPASREVIAQVSDGGPDDATSAVDAAAAALSAWSRTAPRERSEVLRRMYELMIRDRDSLAAMISLENGKSLSDATSEVTYAAEFFRWFAEEAVRTTGDYGVSPAGGTRTVVTHKPVGVAALVTPWNFPAAMATRKIAPALAAGCTVVLKPASETPLTALAVTRLLIEAGLPDGVVNVVPTTDAPSVVTTWMNDPRVRKISFTGSTGIGRLLLKQAAERVVNSSMELGGNAPLVVTEDADIDAAVAGTMVAKFRGAGQACTAANRLYIHADIADEFSTKLGAAVESLTVGPAAEGSQIGPLISAKAVDGIKALVESAVAAGARVTHQASIPNSKGFYYAPTVLQDVPADADVVMNEIFGPVAPIVTWTDEAQMLRLVNASEFGLAAYVFAGDLQRAMRIGEAIDAGMVGINRGIVSDPSAPFGGMKQSGLGREGARAGLEEFTETQFLSIDWPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKG8</accession>
    <name>A0A0Q8VKG8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Conjugal transfer protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04445</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54736">
        <property type="protein sequence ID" value="KRC54736"/>
        <property type="gene ID" value="ASE19_04445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="961809at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014862">
        <property type="entry name" value="TrwC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08751">
        <property type="entry name" value="TrwC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TrwC" evidence="1">
        <location>
            <begin position="10"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1174" mass="127097" checksum="DC9D0AC0CDF26D2F" modified="2016-01-20" version="1">MTVSMRRMSAGTGYQYLLRSVVAGDGDRAMSTPLTRYYAETGTPPGRWMGSGLAAFGDGRLHPGMQVSEAQLALLIGMGRDPVTGDQLGLAYPTYKKLSARIEERVAGLDPEMTQEDCAAETSRIEAEETKAGSRNAVAGFDLTFSVPKSVSVLWGVADAATQERIVNAHHAAVSDVLAYFEREVAATRAGLADRDGAVAQVGVAGVAAVAYDHYDSRAGDPQLHTHLVLSNKVLTLRDGQWRSLDGRPVFASVTGLSAHYNALLADRLTRDLGVEWELRQRGADRNPQWEIVGVSDELIAEFSSRTREIELRKDELIAEYVARHGRMPSAKTIVELRAQATLATRPPKETRSLADLTAQWRQRAAAHLGLEPTSWAATLLDNAAGSLNVDDVPLAAIEAIGADVVTAVSVKRSVWSHWNLLAEVSKQTMDMRFASTAEREAVVAMVVDAAQFQSVALTPPELAISPVRFQREDGTSIFRPRHSVKYSSTAVIEAETRLLDRSEKTTAPSVPPSVVMRAIRDAHGALSAEQRTALESITDSGRLVDLLVGPAGAGKTTTMHALRSAWVHEHGRGSVVGLAPSATAAQALADDLRIACDNTAKWLYEYDHGRTQLRPGQLVIIDEATLAGTTSLDRISGIAAGAGAKLLLVGDPHQLQSIDAGGAFALLVDRRTDAPELTEIHRFKNKWEKHASLALRRGEAEVMSTYARQDRIREGMTDDMLDAAYEAWRADTNSGVASLLVAESARAVQALNERARAERLLVDGAVNGREVHLTGGSRASVGDVVITRRNDRTIETTARGWVMNGDRWRITDIRRDGSVAVNRLDLRRRGSSVLPAEYVEHHLDLGYAVTAHRAQGITVDTSHVVVTPTTTRENLYVSMSRGRDSNIAYVALDQPDDSHSTPELEDVTARTVLFGVLQHSGASLSAHQTMEAEYAIHGGIARLAAELETIAADAQRDRFVDLLNRSGLTADQLSAAVESAAFGPLTSALRRAEAYHHDLEALVPRIVRQHGLDDADDIAAVLRHRTDRVASSSPRGCRLHPRLIAGLIPEPLGVMSIKDRQALDQRKELIESRARMLADMAICSGDAWVRCLAELPSRPWGRDEWLGAAITVAAYRDRYNITSVVPVGAGLVSETQWMDRQRALGAVRDASCLGRTDRGGAHLVGGGSVISAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKQ8</accession>
    <name>A0A0Q8VKQ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Crotonase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05200</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894220.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54861">
        <property type="protein sequence ID" value="KRC54861"/>
        <property type="gene ID" value="ASE19_05200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="257" mass="27192" checksum="56D8235AD84EF9EE" modified="2016-01-20" version="1">MTLTVSDEARVRTLVLDRPDALNAFNEALYDATADALLDAAADPSVAVVLLTGSGRAFSAGTDLLEMHRMATDPSFERGKHGFIGLIDALVDFPKPLVVAVNGLGLGIGATILGFADLGFMSTAAKLKCPFTSLGVAPEAASSYLFPALVGRQNAAWALLSAEWISAEQAREMGLVWRVCAPEELLATAREHATLLAQRPISSLVAVKRTMTEPHRTAIREARDRENAAFAELMGGPANLEALSAFAEGRAPDFTGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLB6</accession>
    <name>A0A0Q8VLB6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sulfur reduction protein DsrE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07195</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895295.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53863">
        <property type="protein sequence ID" value="KRC53863"/>
        <property type="gene ID" value="ASE19_07195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1997912at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027396">
        <property type="entry name" value="DsrEFH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003787">
        <property type="entry name" value="Sulphur_relay_DsrE/F-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02635">
        <property type="entry name" value="DrsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75169">
        <property type="entry name" value="SSF75169"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="120" mass="12426" checksum="F629E8467DD09891" modified="2016-01-20" version="1">MTRQLVVKVTCGADEPERCNQGFTVAATAAASGVTVSLWLTGEAAWLAVPGRAAELDLPLATPLPDLIDAVLATGSVTVCGQCAARRSLEEKDLLAGVRIAGASAFVEEVLRDDAQALVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLV2</accession>
    <name>A0A0Q8VLV2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08085</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895455.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54023">
        <property type="protein sequence ID" value="KRC54023"/>
        <property type="gene ID" value="ASE19_08085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="720131at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004185">
        <property type="term" value="F:serine-type carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000667">
        <property type="entry name" value="Peptidase_S13"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30023">
        <property type="entry name" value="PTHR30023"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02113">
        <property type="entry name" value="Peptidase_S13"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00922">
        <property type="entry name" value="DADACBPTASE3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00666">
        <property type="entry name" value="PBP4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="48"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="496" mass="51428" checksum="F8F9BB3B5E8E230E" modified="2016-01-20" version="1">MGKGDSSRRREERPRRARKVVAGAVAVALLAGGGVAWQTGVAEDWWHDLRSDTGEPPADPAAVAPPPQVDVPEVVRPGVLARPAAASALLDRAAVRAALARLDSKDLGRHVLAAVGPLSGTDLTYESVEGSALAMPASTTKLVTSAVALFLLGPEHTFATSTVLEPGGTTPRLVLVGGGDPFLTRTPASTADPASPTYEPKRADIRTLARSTARTLRADGVRAVRFGYDDTLFSGPAFNPRWKADYFPSEVSPVSALWLDEGRTADGSTRVEQPALTAAEEFRKQLVRAGVRVTGPTSATSAAPAAAPVAHVTSPTVAQIVQRLVEVSDNNAAEVLLRQIGVADQGEGSFLAGQRSVRRVLGANGIDLGRSVLHDGSGLSRSNRLAPQVLVDVLRWAASADQPGLRPLLAALPVAGYTGSLADRMDHGPAAGRGRVRAKTGTLTGVTSLAGIAVDRDGNLMAFALMADQVKDAKSMLARVAMDDAAAGLGACSCGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMB7</accession>
    <name>A0A0Q8VMB7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-hydroxy-2-methylbutyryl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08860</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895583.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54151">
        <property type="protein sequence ID" value="KRC54151"/>
        <property type="gene ID" value="ASE19_08860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1260864at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="254" mass="26252" checksum="C6F451C98AD4DB95" modified="2016-01-20" version="1">MQINDTVALVTGGASGLGRATVEALLAKGGRAVILDLPGGPGEVAAKELGDAVRFVPGDVRSEDDVNAAIAAASELGTLRVVVNCAGTGDAIKTVGRDNTPYPYDKFQRIIEINLLGTFNVIRLTAAHMAGLDLLGEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDLSTIGIRVVTIAPGLFDTPLLASLPEEARKSLGQQVPHPSRLGDPKEYGALAAHVVENPMLNGETIRLDGAIRMAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMF4</accession>
    <name>A0A0Q8VMF4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5 family acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892795.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56777">
        <property type="protein sequence ID" value="KRC56777"/>
        <property type="gene ID" value="ASE19_02870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1526822at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="6"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="179" mass="19057" checksum="78979BBD73DB1533" modified="2016-01-20" version="1">MVAADVSVRVGWPADAAGIAEVQLRSWRSRYDGRLAAQLDEQGIGVDDLAEAWRSTLARPPQARQRALVALVRDTVVGFALTGPNTDPDADPSADGEIGELTIDPDTTRAGHGSRLLQACVDTLLADRFARAVVWVDATDDVLRAFLTSTGWAPDGASRELADETGAALKQVRLHTALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMF7</accession>
    <name>A0A0Q8VMF7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-dependent dethiobiotin synthetase BioD</fullName>
            <ecNumber evidence="5">6.3.3.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">DTB synthetase</fullName>
            <shortName evidence="5">DTBS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Dethiobiotin synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">bioD</name>
        <name evidence="6" type="ORF">ASE19_05350</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA, also called 7,8-diammoniononanoate) to form a ureido ring.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>(7R,8S)-7,8-diammoniononanoate + ATP + CO2 = (4R,5S)-dethiobiotin + ADP + 3 H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:15805"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:149469"/>
            <dbReference type="ChEBI" id="CHEBI:149473"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.3.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; biotin biosynthesis; biotin from 7,8-diaminononanoate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the dethiobiotin synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.3.3" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894199.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54882">
        <property type="protein sequence ID" value="KRC54882"/>
        <property type="gene ID" value="ASE19_05350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1739932at2"/>
    <dbReference type="UniPathway" id="UPA00078">
        <property type="reaction ID" value="UER00161"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004141">
        <property type="term" value="F:dethiobiotin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009102">
        <property type="term" value="P:biotin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00336">
        <property type="entry name" value="BioD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004472">
        <property type="entry name" value="DTB_synth_BioD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43210">
        <property type="entry name" value="PTHR43210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006755">
        <property type="entry name" value="DTB_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00347">
        <property type="entry name" value="bioD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0093">Biotin biosynthesis</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="5">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="13"/>
            <end position="18"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="113"/>
            <end position="116"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="189"/>
            <end position="190"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="219"/>
            <end position="221"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="239" mass="24600" checksum="FDB7276AE274215B" modified="2016-01-20" version="1">MTRVVVVTGTDTGVGKTVATAALAARAAAAGERVLVVKPVQTGIGGTEPDTPDVDTVRSLAGVETVQFVALDEPLAPDTAARRQGVAIPTVREHVARIRELVAGASYDVVLVEGAGGLLVRLDAEGGTLLDLARDLTFTLRRRGADDVVSSPVEVVVVTRAGLGTLNHTELTCTALRAVQVEPAGLVIGSWPSSPGLAETCNREDLPRVTGVPVLAVLPEGAGSLSGDDFRTAAPTWFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMQ9</accession>
    <name>A0A0Q8VMQ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05915</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894096.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54978">
        <property type="protein sequence ID" value="KRC54978"/>
        <property type="gene ID" value="ASE19_05915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041478">
        <property type="entry name" value="TetR_C_27"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17935">
        <property type="entry name" value="TetR_C_27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="14"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="188" mass="20927" checksum="8CC809B0A658101A" modified="2016-01-20" version="1">MPKIAADTLPAHRDLVRRRIFDAFAQLMDERSFDAITMAQIAGRAGLGRTAIYHHFKDKEAVVVAFATEETQHYLADLRRDLELVPDPVGRIRVYLRHQLRAGQQFHTGMGGILYHLLSEEAMEKIHDHVAAVEAVLEDILDEGIESGAFRVGDRKAAMSLLHAALATRQLPVGAVEEFVLRGLGHMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN62</accession>
    <name>A0A0Q8VN62_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22740</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892599.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58884">
        <property type="protein sequence ID" value="KRC58884"/>
        <property type="gene ID" value="ASE19_22740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1770401at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021421">
        <property type="entry name" value="DUF3071"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11268">
        <property type="entry name" value="DUF3071"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="275"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="295"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="346" mass="37030" checksum="1EEFDF5BE59A5DEF" modified="2016-01-20" version="1">MTEMDDAGTAADTVQPVAVPLTLAGSSPDARRLLLVDDQGSEYTLVITPDLRAAVRAETTREPTRVGQLETKMSSSIRPREIQTRIRAGESTEAVAEAAGTTVDAIMPYVAPVLAEREHVAERALKASLRRTPGEGTAAHTQSRVLGDAVAAHLRNTGADPAEVAWDAYRRETGRWVLTATYDAGTRSGTARFTYDAPGNYALSDNDDARWLVGDVLPEPVAPARDDLQEARERRLAVVPAEELPLGTLGDAPDELPFGDAFEAEASTGLVDIPAPRQHAAPSDAEAAEGAEAPEVLDEPIRATTDEEASAAAERERAKHRRPVQKKRGRASVPSWDEIMFGGGDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNG8</accession>
    <name>A0A0Q8VNG8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22860</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892577.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58907">
        <property type="protein sequence ID" value="KRC58907"/>
        <property type="gene ID" value="ASE19_22860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="190667at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360206" evidence="1">
        <location>
            <begin position="36"/>
            <end position="887"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="887" mass="92472" checksum="48D62226FC1CFA2B" modified="2016-01-20" version="1">MRLSSGSRPAVLLSALLGALLALTLLPGLAAPARAATVVVSGKVTGLDATGATVAIADVFVEAKDADGDTFDPRIYDYTATDGSYSLTLPTTGTYQIAMECWGDYPCAQEYAPEPTVTKVVSAATTYDATLERWGRITGTVKKNGVATAWPTAEITADNDARDYWRSYPGATVADNGTFTIDKVAPGTVAVQGNEPWEAENFLTTVPNQTFTVTPGQTTAISLAVEDWKGFYLRAVDPSGAPMDKVRWNVFSRPVGGAWDNGLQYGPLETGADGRMKFRISDAKEYTLCFYDDVYDDNFDPGSQRPNRYGTRCLGNTPDLASATAWQPTAAQPKLKQDLTLPLVGKSMQPGDPWTTGTGVTAVGTPITVDPGPWSPAEVTLSWQWKYWNGTQLVAIPGATSPTYTPTADMVGKRPVAYITGTAPGYATATAAWGVNTVGGTAPTMSGSLSITGDLSVGSTATAHAGTFTPAVEYPSWWWYLDGRPIFGAQGDTIEITSDMRGKKLEARITAYNWDNGDNEYFNRVSVTVPGAISGSTPTVTGTTAVGSTLTANAGTWTTGTTLAHQWLRDGAPISGATATTYPLVTADQGKAIAVRVTGTKTGYDPVVKTSAATSAIQGVFTTVPTPTIAGTTAVGSTLTANPGTWAPAGATFTYQWYRSGTAISGATASTYTLTASDQTKTMTVKVTGVLSGYVSRSSTSAATAAVLGVFAAPVPTISGTKAVGYTLTAGLGTWTPAATTYTYQWYRSGAAISGATASTYKLTSTDVGKTMTVKVTGVRSGYVTKSVVSAATSAVLKVFITAPVPTISGTRKVGSTLTAVVGTWSPTPTGTTYKWYRSGVLISGATARTYTLTSTDRGKTIKVVVTRSLAGYLTTSRTSAATAAIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNP8</accession>
    <name>A0A0Q8VNP8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22925</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892568.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58918">
        <property type="protein sequence ID" value="KRC58918"/>
        <property type="gene ID" value="ASE19_22925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="19"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="24331" checksum="46717A4A30878475" modified="2016-01-20" version="1">MTNAPATDGRRKAAAARRRARQAEIIAATREIFDSKGVRDVQIEEIATAVGINRAIVYRHFTGKEELFALTLVGYLDELHDAMAAAAAGTDVPREQLRSIVGAFVDYGVAHPAFVDCAQALMVRPGDELLDEIAEGPLFRLGRGITSCLTVLSSTLAGGVEKGAFVLSDDPVLLANALYASGLGALQLARLGILVSEIAPGIPTVGEISAAQVRDYMVNSALALVTADLASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPL6</accession>
    <name>A0A0Q8VPL6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_04990</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894258.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54823">
        <property type="protein sequence ID" value="KRC54823"/>
        <property type="gene ID" value="ASE19_04990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1179151at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="27954" checksum="A1F5E9F1E3611967" modified="2016-01-20" version="1">MGALLEVDDVVVKFGGVTAVNRANFTAERGQITGLIGPNGAGKTTCFNVITGLQRPTSGRVRYRDRDVSRWPVHKRAKHGIGRTFQRLEAFGSLSVRDNVRVAHDIHGGPLAWVRPSGRTSLEIDVLLDRVGIAEYADERADSVPTGTARLLELARALACNPQLLLLDEPSSGLDETETDAFGELLKDLAAEGAAILMVEHDMDLVMAVCDDIHVLDFGQIIASGTPAAVRTDPAVQRAYLGYAETDHEGDHTSEMGAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ55</accession>
    <name>A0A0Q8VQ55_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00580</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896776.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59564">
        <property type="protein sequence ID" value="KRC59564"/>
        <property type="gene ID" value="ASE19_00580"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360261" evidence="1">
        <location>
            <begin position="28"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="262" mass="28322" checksum="4324589AC443EC73" modified="2016-01-20" version="1">MRRLIVLVSAVVLAFTTLVPASGPGSAATGSGAGPVLARDVPAFQTARNRQYKQASFTYSRVCPGCSGYNYSSNNFPKATGNVSLVMTSYKILDQNNRYDFFLVDVTATIGNRKGDEDWGWMNFDIRSTGTVKVLSSSYSLGKDVRNTTTCKSYPVDLGVGFYGVSAGTTVGHVKFCNPGSKVASSSITRGRHYHATGISGIAQLQMQRYVRVANGKLPSFSITAERNVDSSNCATWSDGYHCWVNHGTRTSKWSIGTSRQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ58</accession>
    <name>A0A0Q8VQ58_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 9">Heme chaperone HemW</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_23345</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the anaerobic coproporphyrinogen-III oxidase family. HemW subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893905.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57699">
        <property type="protein sequence ID" value="KRC57699"/>
        <property type="gene ID" value="ASE19_23345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1130951at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004109">
        <property type="term" value="F:coproporphyrinogen oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006779">
        <property type="term" value="P:porphyrin-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034505">
        <property type="entry name" value="Coproporphyrinogen-III_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004559">
        <property type="entry name" value="HemW-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13932">
        <property type="entry name" value="PTHR13932"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00562">
        <property type="entry name" value="HemN-like__clustered_with_heat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00539">
        <property type="entry name" value="hemN_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="8 9" id="KW-0143">Chaperone</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 9" id="KW-0349">Heme</keyword>
    <keyword evidence="6 9" id="KW-0408">Iron</keyword>
    <keyword evidence="7 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="10">
        <location>
            <begin position="24"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00017228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU364116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC57699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="401" mass="43542" checksum="0C79060D6DC5B1F9" modified="2016-01-20" version="1">MPSALPEGDPVPTDGSLPEQALAALGEVPFGFYVHVPFCRVRCGYCDFNTYTAEELGPGVSRSSYADQAVAEVRLARRVLGERERSVDTVFLGGGTPTLLPPADLGRMLRAIDDEFGLAPGAEVTTEANPDSVDLAYLTELREAGYTRVSFGMQSAVPSVLAVLDRTHDPERVPRVVEAARAAGFEQISLDLIYGTPGESAEDWEASLDAALACAPDHVSAYSLIVEDGTALARRVRRGELPMPDEDDLADKYVQADERLTAAGLGWYEVSNWARDDAARCRHNLGYWAGAGWWGIGPGAHSHLGGVRWWNVKHPAAYAGRLAAGHSPAHAREVLDEQTRQVERVLLEVRLREGLDVAVLDDTSALPRLVAEDLVEDRADRVVLTRRGRLLADAVVRTLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ74</accession>
    <name>A0A0Q8VQ74_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_23435</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893921.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57715">
        <property type="protein sequence ID" value="KRC57715"/>
        <property type="gene ID" value="ASE19_23435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1155802at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04590">
        <property type="entry name" value="CBS_pair_CorC_HlyC_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002550">
        <property type="entry name" value="CNNM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044751">
        <property type="entry name" value="Ion_transp-like_CBS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005170">
        <property type="entry name" value="Transptr-assoc_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03471">
        <property type="entry name" value="CorC_HlyC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01595">
        <property type="entry name" value="DUF21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01091">
        <property type="entry name" value="CorC_HlyC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51846">
        <property type="entry name" value="CNNM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0129">CBS domain</keyword>
    <keyword evidence="6 8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 8 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="61"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="96"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="126"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="domain" description="CNNM transmembrane" evidence="11">
        <location>
            <begin position="1"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="10">
        <location>
            <begin position="208"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="10">
        <location>
            <begin position="276"/>
            <end position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC57715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="433" mass="47271" checksum="019675B70682ED9A" modified="2016-01-20" version="1">MIADSLWPLLVAALLVVLAGLFAAADAALAGFSRARAQELLADGRGGAKRLIAVLDDAPRHLNTALLLQLLCEIAAIVVVTLHIDARLDASWWARAGLALGVMLVVSFVVIGVAPRTVGRQHAESVAIWSAWPLAALTTVLGPVPRLLILVGNAITPGRGFREGPFQTETELRELVDIAEATELIEAEERRMIHSVFELGDTTVREVMVPRGDVVYVEAHKNLRQTKSLFLRSGFSRVPVIGENLDDVRGFAYLKDVVRRDFEDPEIELTQRVDEVMRPVHWVPESKPVDDLLREMQARRQHVAIVVDEYGGTAGLITIEDLLEEIVGEITDEFDEAEVEVEHIGGVDDGMVRVSSRYPVDDLDELFGFTIEEEDVDSVGGLLAKHLGRVPIPGSVVEAHGLRFEAEQAAGRRNKIGTVLISRVAAAPALSED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ97</accession>
    <name>A0A0Q8VQ97_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Glycerophosphodiester phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_01185</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896672.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59669">
        <property type="protein sequence ID" value="KRC59669"/>
        <property type="gene ID" value="ASE19_01185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1112046at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032781">
        <property type="entry name" value="ABC_tran_Xtn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12848">
        <property type="entry name" value="ABC_tran_Xtn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="11"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="289"/>
            <end position="507"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="516"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="563"/>
            <end position="614"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="43"/>
            <end position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="321"/>
            <end position="328"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="623" mass="67459" checksum="E0C60A18FB6BD4AC" modified="2016-01-20" version="1">MPEPGSGRSLLNLERVSKSYGIRPLLTDVSLGIAAGERIGIVGRNGDGKTTLLRIMTGDEEPDEGRVSRQRGLLVGVLTQRDDFEDTHTVREIVLQGMSDHEWAADARLREIVDVLLAGVDLDRAVAGLSGGERRRCALAGLLLGDHDLVILDEPTNHLDVEAVAWLAAHLAARPSALVVVTHDRWFLDAVCQQTWEVHDGVVDSYEGGYAAFVLAKAERQRQAAASEVRRQNLVRKELAWLRRGAPARTSKPKFRIDAANALIEDVPPPRDRLELQRFAAQRLGKDVIDVEDVDFSRGTRELLKHATWRLGPGDRVGLVGVNGAGKTSVLSLLSGAAAPNVGRVRHGRTVALQHLTQDVEVEDPEARVLDTVEGIRRVTKTADGEISATSMLERFGFTGDKLTARIGDLSGGERRRFQLLRLLLTEPNVLLLDEPTNDLDIETLNVLEDFLDGWPGTLVVVSHDRYFLERVTDSVWALLGDGQVVMLPRGVDEYLERRRDSLRAAAAAASSASSSGSAAMATPVAPGSASPADLAPAHPAAAAPASKAKAGSAEERVARKTVARLDKVLERLSEREAELTAALTEHATDPDRLAAIAADLTALLEEKEIAELEWLEAAEVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR91</accession>
    <name>A0A0Q8VR91_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00995</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59631">
        <property type="protein sequence ID" value="KRC59631"/>
        <property type="gene ID" value="ASE19_00995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1917310at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="22"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="56"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="90"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="112" mass="11833" checksum="4558FB378620E6AB" modified="2016-01-20" version="1">MTAVTGGKRAGDRSRRRFRPDLLALALGITFALVAWGYLVLAAIDFGATARHDGKGSAWLFLAVAALGGVLCLFLAFMLAVRLSRAVGLTTSPEPKPQRDPNAPKGGKRAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRB1</accession>
    <name>A0A0Q8VRB1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AraC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01075</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896694.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59647">
        <property type="protein sequence ID" value="KRC59647"/>
        <property type="gene ID" value="ASE19_01075"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1748122at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024775">
        <property type="entry name" value="DinB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12867">
        <property type="entry name" value="DinB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="5"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="302" mass="33620" checksum="7807BD50A960E1AB" modified="2016-01-20" version="1">MTGRDRLRELLDAVLDEDNRTLGDMADGAFASPYHFSRVLSRDVGEAPVAMRRRVMLERAAWRIRGGGSVTDAAWEAGYESLEGFSRAFARAYGHPPSEAAGSDVWLPAPNGIHFHPPMNLWVHSTEQPMNPVTDQLVRHDLDDVRELITHAKALSPEDWTAVRVPGHQVATWEGPEESIATVLERAVFAKEVWLAAVEGTDFPDVDREPDPVALLARHEAVAARWLAVVRDTDRRGGWDDRIVDALCEPPESFVLSSIVTHVLTFGAYRRQLARVWLRGAGVDLDDGDPINWLRAENGEKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTE5</accession>
    <name>A0A0Q8VTE5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Dephospho-CoA kinase</fullName>
            <ecNumber evidence="1">2.7.1.24</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Dephosphocoenzyme A kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">coaE</name>
        <name evidence="2" type="ORF">ASE19_22685</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>3'-dephospho-CoA + ATP = ADP + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18245"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57328"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 5/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the CoaE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.24" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892610.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58873">
        <property type="protein sequence ID" value="KRC58873"/>
        <property type="gene ID" value="ASE19_22685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1515383at2"/>
    <dbReference type="UniPathway" id="UPA00241">
        <property type="reaction ID" value="UER00356"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004140">
        <property type="term" value="F:dephospho-CoA kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00376">
        <property type="entry name" value="Dephospho_CoA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001977">
        <property type="entry name" value="Depp_CoAkinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01121">
        <property type="entry name" value="CoaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00152">
        <property type="entry name" value="TIGR00152"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51219">
        <property type="entry name" value="DPCK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="10"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="202" mass="22013" checksum="D6ED0D1B6B0724C0" modified="2016-01-20" version="1">MRVGLTGGIASGKSTVSSILRELGAVVIDADQLAREVVAKGTPGLAAVVEAFGPDVLTADGELDRPRMGALVFNDETLRRMLEAIVHPLVFERYAELEASAPTDGIVVHDIPLLVESGRAGEFDAVIVVDAPEELQVERMVRDRGWTEEDGRARIAAQATRDQRRQVATYLIENTGTREDLRARVHEVYDELVQQALARQSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VV11</accession>
    <name>A0A0Q8VV11_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">OmpR/PhoB-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04145</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AfsR/DnrI/RedD regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56999">
        <property type="protein sequence ID" value="KRC56999"/>
        <property type="gene ID" value="ASE19_04145"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005158">
        <property type="entry name" value="BTAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03704">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01043">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="1"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="283" mass="30496" checksum="85A26CF7FBA901D5" modified="2016-01-20" version="1">MVDDMVTGTLRGRPRQILEILATAGGAPVAKDRLSDLVWDGDPPASHQGTLESYICNLRHCLGVRSGRGSVLATSAGGYQLAGPSLRVDLAEVRRHVASSAGPVDVAVDEALEAVRLTTGDLLQSEPYAAWAERTREVFAREAVAAYVRAAGFANATRRHDGAARLAREAVRLDKLCESAWQQLIRSYWLAGRHGEALRAYAELRAVMIEELGDEPGPDSRDLYLAVLQDSSDEHDRRRFAGRELQTLLVLLRQSLASTPGAVLPALDSALSAAAVRVISAQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXJ3</accession>
    <name>A0A0Q8VXJ3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Phenylalanine--tRNA ligase alpha subunit</fullName>
            <ecNumber evidence="13">6.1.1.20</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Phenylalanyl-tRNA synthetase alpha subunit</fullName>
            <shortName evidence="13">PheRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">pheS</name>
        <name evidence="15" type="ORF">ASE19_23280</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + H(+) + L-phenylalanyl-tRNA(Phe)</text>
            <dbReference type="Rhea" id="RHEA:19413"/>
            <dbReference type="Rhea" id="RHEA-COMP:9668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9699"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78531"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="13">Binds 2 magnesium ions per tetramer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 13">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 13">Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.20" evidence="13"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892509.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58978">
        <property type="protein sequence ID" value="KRC58978"/>
        <property type="gene ID" value="ASE19_23280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="469058at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004826">
        <property type="term" value="F:phenylalanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006432">
        <property type="term" value="P:phenylalanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00281">
        <property type="entry name" value="Phe_tRNA_synth_alpha1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004529">
        <property type="entry name" value="Phe-tRNA-synth_IIc_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004530">
        <property type="entry name" value="Phe-tRNA-synth_IIc_mito"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004188">
        <property type="entry name" value="Phe-tRNA_ligase_II_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022911">
        <property type="entry name" value="Phe_tRNA_ligase_alpha1_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002319">
        <property type="entry name" value="Phenylalanyl-tRNA_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010978">
        <property type="entry name" value="tRNA-bd_arm"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11538:SF41">
        <property type="entry name" value="PTHR11538:SF41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02912">
        <property type="entry name" value="Phe_tRNA-synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01409">
        <property type="entry name" value="tRNA-synt_2d"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46589">
        <property type="entry name" value="SSF46589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00468">
        <property type="entry name" value="pheS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12 13" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="9 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 13 15" id="KW-0436">Ligase</keyword>
    <keyword evidence="10 13" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11 13" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="14">
        <location>
            <begin position="135"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC58978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="372" mass="40330" checksum="10805FDCA34865B4" modified="2016-01-20" version="1">MSGPNTDYDPVEVAAVSPAEVEAARDAALAAIAAAADLEQLKAVRTEHAGDRSPLALANREIGALPPQARKEAGQRVGQARGAVNQALAARQVELEADNEARILVEEAVDVTLPTDRDPVGARHPLTTGAELIADIFVAMGWEVAEGPVIEAEWLNFDALNLGPDHPARTMQDTFWTDPGEDHLVLRTHTSPVQARTMLTRGVSEGAPIYVVCPGRVFRTDEYDATHSPMFHQVEGLAIDEGISMAHLKGTLDHFASQMFGEGITTRFRPSYFPFTEPSAEVDLICFVCRGVGHDDKGVCRTCRGEGWIEWGGCGIVNPRVLQACGVDSTRYSGFAFGMGIDRTLMFRHGLEDLRTLFEGDVRFTTAFGSEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZ18</accession>
    <name>A0A0Q8VZ18_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00835</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896739.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59602">
        <property type="protein sequence ID" value="KRC59602"/>
        <property type="gene ID" value="ASE19_00835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1865110at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="122" mass="13001" checksum="B080C204FBA526A4" modified="2016-01-20" version="1">MDDSVIFVARAQVLADLGARALATPASVNLLEEACAERRWWLEQWAEGAPYIAGLIAQDLQDALADLFGRDQRDGLWPVCALCEDGPVHALHVDPDLGGPDPQWVCEESGATVAPLGGLAPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZG1</accession>
    <name>A0A0Q8VZG1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CHK domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01625</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896593.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59746">
        <property type="protein sequence ID" value="KRC59746"/>
        <property type="gene ID" value="ASE19_01625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1457558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015897">
        <property type="entry name" value="CHK_kinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00587">
        <property type="entry name" value="CHK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CHK" evidence="1">
        <location>
            <begin position="149"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="390" mass="42573" checksum="A71ADE6A99788090" modified="2016-01-20" version="1">MQKLLWLAGRAATVGAHVVAEKIRPVTPRVASDVPSNGVTLTPEWLTAVLCRGVPGAEVVAWHSPGGSSGTSERAALRVEYNAAGTAAGLPTELFTKSTASFTQRLLLGGADVLAGETHFFMTFRPSIAMEAPKGYWGAVDERSWRSIIVLEDIDASKGATFVQPTAPLSRTQVEDVLRNMAGYHGAWWDSPELKVLKTPTDHYDNVAGMLDFEARCKVGMERAAAVIPRSLVGEADRLWAGTQKGLRVCTDEMTPTLLHGDSHAGQTYVTADGAMGITDWQAVMRGGWSYDVAYFISSACRPEDRRAWEHELLEHYLEQLALAGGVAPDIDEALLRYRQSMFYPLSAWTFTIGRAWYQPKMQPDEISLAIIERIATAIDDLDCFGALGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMG1</accession>
    <name>A0A0Q8UMG1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Metal-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20170</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895956.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46181">
        <property type="protein sequence ID" value="KRC46181"/>
        <property type="gene ID" value="ASE19_20170"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1665714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003772">
        <property type="entry name" value="YceD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02620">
        <property type="entry name" value="YceD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="192" mass="20926" checksum="3E3BCBA4A5A61D36" modified="2016-01-20" version="1">MPGPGSDHLNGLDPRAPLVLDTRELGRRPGSQREVSRTVPAPADLGIEVLSVPEGAPVEIDLRLEAVMEGVLVTGTASAVLEGECARCLEPIHDEFEVTFQELFVYDDIRDSAEAEEDDEVSMLQDDLVDLEPLLRDAVVLALPFQPLCQDDCPGLCPECGVRLIDEPDHAHEAAIDPRWAALTKLEQDPTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMI7</accession>
    <name>A0A0Q8UMI7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PadR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20400</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895989.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46218">
        <property type="protein sequence ID" value="KRC46218"/>
        <property type="gene ID" value="ASE19_20400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1823496at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="N-acetyltransferase" evidence="2">
        <location>
            <begin position="139"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="32116" checksum="06802AD46B999C2E" modified="2016-01-20" version="1">MLTEVLRRFNRTYTQRIGVLDESFLGTGRPLAVSRLLFEIGHGGPAGVRELRERLELDSGHLSRLLRRLEDEGLVATVIDPDDRRRRVAVLTGDGEAAYDDLERRSEERADLLVAPLTPRQQERLAEALGTADLLVRAATVRPREVSSDAPVAREATARYFAELDGRFPDGFDPGGPDAPEPGATYVVATSDGTPVAYGGIRPVPDVGPATAEVKRMWVDDAWRGAGLGSRMLRHLEELARGRGFERVVLDTNGTLLEAIAMYERAGYERIDRYNDNPYAEAFFAKDLPTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMU6</accession>
    <name>A0A0Q8UMU6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896047.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46276">
        <property type="protein sequence ID" value="KRC46276"/>
        <property type="gene ID" value="ASE19_20765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1267844at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021454">
        <property type="entry name" value="DUF3105"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11303">
        <property type="entry name" value="DUF3105"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="253" mass="27718" checksum="BE27DEDB5B736DEC" modified="2016-01-20" version="1">MAKSSKSEKSDRRQVIEEIRRKQKSADKRQGRAIIGVCVLVALLIVGAAAWSPVKTAIEKARYSGKDLADIGAPASTCGKVTEEEATGSGDHVDKSEQVKYDHAPPAYGKHWNEAGLAPAPITDRYYTEGTRPELESLVHNLEHGYTILWYDDTAADDSGEIAAIKAMAATLDANDTNQRLKFKAAPWTKADSKETGKGFPKGMHVAFTHWRNDAAANKSYGVWQYCSEASGAALKQFMTDYPFTDAPEPFVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMX3</accession>
    <name>A0A0Q8UMX3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21180</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46350">
        <property type="protein sequence ID" value="KRC46350"/>
        <property type="gene ID" value="ASE19_21180"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="59" mass="6194" checksum="65D49ED9002CCBA3" modified="2016-01-20" version="1">MTRPATAAQRPLRRPPFVRTIPAMPSPTPIGAAQQVSEQTKAAIEMPSVPPPGLPAPDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN76</accession>
    <name>A0A0Q8UN76_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SERPIN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21565</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the serpin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896191.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46421">
        <property type="protein sequence ID" value="KRC46421"/>
        <property type="gene ID" value="ASE19_21565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1712777at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008201">
        <property type="term" value="F:heparin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004867">
        <property type="term" value="F:serine-type endopeptidase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:2000266">
        <property type="term" value="P:regulation of blood coagulation, intrinsic pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.39.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.497.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015555">
        <property type="entry name" value="AT-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023795">
        <property type="entry name" value="Serpin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023796">
        <property type="entry name" value="Serpin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000215">
        <property type="entry name" value="Serpin_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036186">
        <property type="entry name" value="Serpin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042178">
        <property type="entry name" value="Serpin_sf_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042185">
        <property type="entry name" value="Serpin_sf_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11461">
        <property type="entry name" value="PTHR11461"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11461:SF53">
        <property type="entry name" value="PTHR11461:SF53"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00079">
        <property type="entry name" value="Serpin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00093">
        <property type="entry name" value="SERPIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56574">
        <property type="entry name" value="SSF56574"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00284">
        <property type="entry name" value="SERPIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SERPIN" evidence="2">
        <location>
            <begin position="77"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="442" mass="46074" checksum="E07A5F554FAB5A62" modified="2016-01-20" version="1">MIDRRDTFRYGLLALAALGGAGALTACGSSDNPDPDVLLPADEGGIQLLSSDVRRAAGDPGLLPDVVAGLQGLAGGLYGSLATGPGNVVLSPYSVLVALGMTLTGAAGATAKEMREVLGVGDLGDRWHKGANALTAHVDGLAGPQERGDGSKADLALATANQVFGQRDVGWSADFLDLLAKEYGAALRAVDFVGATEEARGLVNGWVEERTEDRIKDLLPEGSLDPSTRMVLVDAIYLKAPWEQPFEKTLTARGAFHLAGGKSVDTDLMRRPDVGATVARGTGWQSATVPYAGRTLAMTIVLPDADAFTAVEAQAVAEGFAGFTGSEAAVVDLTLPRWSHRTAASLKKPLEGLGMRAAFGEADFTPMTDEDLDLVVDDVFHQAFIAVDEEGTEAAAATAVVMAETSAPVPVVLTVDRPFLYVIHDVEHATPLFVGRVVDPTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNF5</accession>
    <name>A0A0Q8UNF5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896270.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46500">
        <property type="protein sequence ID" value="KRC46500"/>
        <property type="gene ID" value="ASE19_22045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1871000at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025443">
        <property type="entry name" value="DUF4307"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14155">
        <property type="entry name" value="DUF4307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="18"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="133" mass="14890" checksum="4FA00B205C88DE8C" modified="2016-01-20" version="1">MSASLDQRYGAPSRGRRVLLLLLATAVCVGFLGWLVWVMLFHANPEISSEEIGHEVVSDHLATIEVQIEMDDGLEDPQCSLRAISHDKAIVGETTYRPDPADGPRYEIEVRTERRATTVEWLGCKAPGQPRYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNH0</accession>
    <name>A0A0Q8UNH0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896302.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46534">
        <property type="protein sequence ID" value="KRC46534"/>
        <property type="gene ID" value="ASE19_22240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1582456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="282" mass="29554" checksum="8915BB5522DBDB91" modified="2016-01-20" version="1">MSRSIAGLSVIVTGGARGIGRAVVDRFARAGARVAVGDLDAELARQVADGYDDRVAAARLDVTDVDSWAAFLAEVAHLGPWDVLVNNAGIMPLGPVLEESERVARTIMDVNVHGVINGVKAVAPGMVERGHGHVVNVASAVGRVAVPHGATYSASKFAVVGFSEAIRQELAPQGVDVTVVLPTVVQTELAAGVPAARGIKPVTADDVAAVVESAVRRPKPELWVPRWTQGLSKPTLALPRFVQDAMSRATRAGDVLASADPAARAAYEERARRLTETSDVRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNQ4</accession>
    <name>A0A0Q8UNQ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20645</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896388.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46619">
        <property type="protein sequence ID" value="KRC46619"/>
        <property type="gene ID" value="ASE19_20645"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021400">
        <property type="entry name" value="DUF3039"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11238">
        <property type="entry name" value="DUF3039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="86" mass="9563" checksum="0BA51B6FEBC9CB7F" modified="2016-01-20" version="1">MGFSTDTDVREDRRTVPTDEGDHERFSHYVDKDKLTEAMVMGTPVVALCGKVWVPSRAPEKFPVCPDCKEIWESIPHGDEGSGPDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNW1</accession>
    <name>A0A0Q8UNW1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Indolepyruvate ferredoxin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_21960</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896413.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46644">
        <property type="protein sequence ID" value="KRC46644"/>
        <property type="gene ID" value="ASE19_21960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="37279at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016903">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07034">
        <property type="entry name" value="TPP_PYR_PFOR_IOR-alpha_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.920.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019752">
        <property type="entry name" value="Pyrv/ketoisovalerate_OxRed_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002880">
        <property type="entry name" value="Pyrv_Fd/Flavodoxin_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002869">
        <property type="entry name" value="Pyrv_flavodox_OxRed_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01558">
        <property type="entry name" value="POR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53323">
        <property type="entry name" value="SSF53323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="8">
        <location>
            <begin position="633"/>
            <end position="665"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1165" mass="123770" checksum="0CF7B768EB0D0231" modified="2016-01-20" version="1">MTELLNRAHEPAVPAAPYDLDDRFRVGGPPTLLTGVQAIARLLVEHRALDRRRGLKTASFVSGYQGSPLGGLDRMLADMKDVLDANDIRFVPGLNEELAATAVWGSQIDLPAANATHDGVTGFWYGKGPGVDRATDALRHANMYGVNRRGGAVLLVGDDPASKSSTVPAVSERSLAALGIPVLFPRNATEVVTLGLHAIDMSRASGCVVALKIVADVADGAWVVDSADVDLTPVLPTIDWNGHPYAYTQSPIVLRPAMIVGAEAELVGPRTALVHEYSARNGLNVIDVDAPGARLGLVASGSCYDSLRQALTDLGVTDEALVAAGVRVMRMGMMSPVEPEAVRRFAAGLDEIVVVEDKTSFMEMQVRDLLYGSEHAPRILGKLDAKGQRLIPADGELTAGRLLAPLRHALEGWLTVTPPQRPRTTLPLLPVSRSAYFCSGCPHNRSTVLPEGSMGGGGIGCHAMVTISDRPESAVTGVTQMGGEGAQWIGQAWFTDAGHIFQNVGDGTFFHSAQLAVQACIAAGVNITYKVLYNDVVAMTGAQDAEGALRVPALTHKLHTEGVKKIIVVADEPERHRKRDLAPGTLLWDRDRLDEAQRMLREIPGVTVLIYDQHCAADARRQRKRGSLPARTQRVVINEAVCEGCGDCGVKSNCLSVQPVDTEYGRKTRIEQTSCNTDYSCLDGDCPSFVTVETAPKGRTKAKKPAKKGYPAPPTIAPNAVAEQPVTTTQNVFMVGIGGTGIVTVNQVLATAALRAGYGVESLDQTGLSQKAGPVVGHLRFAAGDLEPANRLTPGSADCFLGFDLLTLAEDRNLQFGSAASTRTVVSTSRTATGSMVADKQVAHPDEADLLDRVRTASADLFDFDALEAADRIFGNTVAANFLLVGAAYQTGALLLPAAAIEEAIEINGTAVAANVAAFRWGRVAVTDPVAFRAANQPAAPVAVRERHVPASVAASGLTGEVLRLVEQRAADLVDYQDEKLADSYVALVAQVAKAEAAVTTGTAFTEAVARNLFKLTAYKDEYEVARLLTDPAFLAETGGAYPGGTIAFQLHPPALRAMGRKKKIAFGPRSHGSLRALAKMKRLRGTAADPFGRAHLRKVERELRDHYRATITDLAAGLTADGLDRAVTIAELPDVVRGYETVKLRNVETYVAELTALGVTPPAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8URJ5</accession>
    <name>A0A0Q8URJ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21055</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896100.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46329">
        <property type="protein sequence ID" value="KRC46329"/>
        <property type="gene ID" value="ASE19_21055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1719670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="157" mass="17049" checksum="8848308AB935DABD" modified="2016-01-20" version="1">MATPNAARELRAETEVAAPADHVWALLTDLSQMAGWSPETVTMVPLKRGGLRVGQWYLGINRRKGFVWPTRSVVAEVVPARRLVWDTPSSGARWVWEIEPVDAARSRVVHRRPVPGRLSLGSRIVAPLALGGNEEHADELEQGMATTVAGLKAAAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UT85</accession>
    <name>A0A0Q8UT85_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19785</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895891.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46115">
        <property type="protein sequence ID" value="KRC46115"/>
        <property type="gene ID" value="ASE19_19785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1993697at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="59"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="124"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="147" mass="15965" checksum="33C99547BB10C676" modified="2016-01-20" version="1">MAEDDDKPALGAHAADRAGTDRAGTDQPDQRDQPAPPVPAGPDRRVLMTARVRDTAARVAWIVCMTLGLILAAAAFSFALKANEQNQLVQTVRDMANAFDLGFFDLDNPVKAFENPNGEVKTALFNYGIACVVYLVLGRILERILRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UTQ9</accession>
    <name>A0A0Q8UTQ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20665</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896030.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46259">
        <property type="protein sequence ID" value="KRC46259"/>
        <property type="gene ID" value="ASE19_20665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1969210at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="182" mass="20179" checksum="8D6B9C661EDE152F" modified="2016-01-20" version="1">MTWKAYHNRGETLRSVIATSSVRRDGVLPMDVEGVSTAFRDELDLLASLTLKWHTRLSGNIEQMLAHQPVDLDQAVTVAWSNTAHELAGVRMIIDNYRAHPLDDAMARAMTTAAEKEHYLLAVMAGRSSLLSEDACLRIGAELEERARLLHRGIPVITPEAAYEEPVVRGTLLERLRAVIAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUB8</accession>
    <name>A0A0Q8UUB8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21555</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896189.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46419">
        <property type="protein sequence ID" value="KRC46419"/>
        <property type="gene ID" value="ASE19_21555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1758276at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359440" evidence="1">
        <location>
            <begin position="28"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="245" mass="25776" checksum="2CD9E7F71B617FF6" modified="2016-01-20" version="1">MRRRTSLVTAVAATALLAAGCGITDDAAQPGVAAEVDGQSIALSKVDSALEDYCSYAASQEGAPTYAKAAIRAQIAWNWAQAVAVGEIAPAYSVDLPAGVERDFVERAWGEDVVTDDNYDSLEFLTWVQLRLEQPLAEIGSQLLIDTTGKAESAEAAQAAGLKAVNEWLDKEGVELNPVFGTHRPETSDFLGDSLSVAVSGQARTDEQIAVRPTSMEEQQASDARIAALPAEQRCGPAVQGQPGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUN3</accession>
    <name>A0A0Q8UUN3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17845</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48788">
        <property type="protein sequence ID" value="KRC48788"/>
        <property type="gene ID" value="ASE19_17845"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019660">
        <property type="entry name" value="Put_sensory_transdc_reg_YbjN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10722">
        <property type="entry name" value="YbjN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="132"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="17180" checksum="7AE06D2C8607568E" modified="2016-01-20" version="1">MVDAYVERLLEEFTGNESVKKDDQGGYPFRFGNSGYTVRVVGTDERPAVRVWSVAVHDVDQTPELLGSLNEINQRLLHARVYWAEKAVVFEDAVAGLALNKGTLESSLTDVAEASNFFGPQLKEKFGGSLTFEDEPAADQPGAAADPTAEPAAGDGLYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUS0</accession>
    <name>A0A0Q8UUS0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Methyltransferase type 12</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18830</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893360.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48958">
        <property type="protein sequence ID" value="KRC48958"/>
        <property type="gene ID" value="ASE19_18830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1812981at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="182" mass="20281" checksum="737ECDA34318EFDE" modified="2016-01-20" version="1">MSTEHASPIEPDTKDWTWVLDETCAECGFDAATVGRSSIAGAIRDNAAFWARALGDPRAGTRPEPAVWSPTEYGCHVRDVHRVFAGRVEQMLTDDDPLFANWDQDETAATQRYDLQEAAGVVPDLVAAAEVAAGWYDGVADDQWSRPGRRSNGSVFTVETLGRYHLHDLVHHRWDVRWIMGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUU5</accession>
    <name>A0A0Q8UUU5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19865</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895904.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46128">
        <property type="protein sequence ID" value="KRC46128"/>
        <property type="gene ID" value="ASE19_19865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1972181at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="158"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="199"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="244" mass="25618" checksum="5B9D728E4458170F" modified="2016-01-20" version="1">MGFRQGAAFLGRGLRLWRERPALMLLGIVPALIVAVVIVALFVVLVVYADDVIDWATPFADDWNDGVRTVFRGGLFLLALVGAGMLSIVTFTGLTLAVGDPFYEKIWKEVELSLGGDVPDRGVGWIRGIGDGLVLVLMGIATAVMVFVLGLLPLVGAVVGFVLGLVLSGRLLAGELVSRPLEARGMDRAARAALMKQHRGAMLGFGVCVQACFLVPFGGIAVMPAAVAGATYLAREALDGVRAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUX0</accession>
    <name>A0A0Q8UUX0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Peptidase_S26 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_19070</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893399.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48997">
        <property type="protein sequence ID" value="KRC48997"/>
        <property type="gene ID" value="ASE19_19070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1291813at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006465">
        <property type="term" value="P:signal peptide processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06530">
        <property type="entry name" value="S26_SPase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019533">
        <property type="entry name" value="Peptidase_S26"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10502">
        <property type="entry name" value="Peptidase_S26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359451" description="Peptidase_S26 domain-containing protein" evidence="2">
        <location>
            <begin position="25"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="124"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="155"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="244"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S26" evidence="3">
        <location>
            <begin position="15"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF10502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="322" mass="34422" checksum="5C3437CECEF30C20" modified="2016-01-20" version="1">MNARRIAVVAQWLLLAAVVVAVTAAGAWRLGGGRWERVETASMGTAAPVNSLLWVEPTDFDALQVGDFITFHPPGDSSVSYSHRVAAVHGDGTVETQGDITARDPWRVTEGDLVGAVVWTWPGAGWLVVAAPVLLLGGLLLAAAVAMIRRRDWRLPVAIVGGALLLSVAIVVHRPLVRAQELGFGEVAGGARATYVSTGLAPVRLEAHRGPHVDLHDGEVGSVLITHKDADGRYGISMHPRIPFWWWVVLVAVCFLPALGAFASGGAPSGHPRTFSGCPAHRARTSRRCRRLRDDAVWLRAGALRGTHPEHRTPRRTSGGDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UW76</accession>
    <name>A0A0Q8UW76_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20305</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895977.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46205">
        <property type="protein sequence ID" value="KRC46205"/>
        <property type="gene ID" value="ASE19_20305"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="13"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="113"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="15611" checksum="C436F3F327B5318D" modified="2016-01-20" version="1">MFDLFNGLPIHPLVVHAVVVLLPLAVVGTAAIALRPAWRRPYGHLVVGCAAVATALVPVATSSGEELEHRVGDPGRHAALGDQLIWFAVALLATSALLVWLDRRADGGRTAVRVVAAVALVSAVAAGVQVYRVGDSGARAAWGDQVTSAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWS8</accession>
    <name>A0A0Q8UWS8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Penicillin-binding protein 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21265</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896136.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46365">
        <property type="protein sequence ID" value="KRC46365"/>
        <property type="gene ID" value="ASE19_21265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="423699at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009002">
        <property type="term" value="F:serine-type D-Ala-D-Ala carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005311">
        <property type="entry name" value="PBP_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036138">
        <property type="entry name" value="PBP_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017790">
        <property type="entry name" value="Penicillin-binding_protein_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03717">
        <property type="entry name" value="PBP_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56519">
        <property type="entry name" value="SSF56519"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03423">
        <property type="entry name" value="pbp2_mrdA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PBP_dimer" evidence="3">
        <location>
            <begin position="56"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="2">
        <location>
            <begin position="297"/>
            <end position="660"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="704" mass="76259" checksum="A98FCF39E53BDDC2" modified="2016-01-20" version="1">MSAASHRSRLRLIVIQTLVFSLLATLGARLYYLQVISGEEYQGQAASQSVREIVVQPQRGLVVDAMGRPLVTNRLTWVVSLDRTLIGKMSDADRAELLRRTAQAIGMKVRRIEGKLLLCGDPGSVAGECWNGSPYQAVPVAQDVKETAALRILEQPEDFPGVVVDRQSVRQYPAPYGINAAHVLGYLSPITKEELEEAEDDGDSSVNGASVVGRAGVEKEYDEFLRGQPGYQQVAVDSKGRVRQDVSDLAAQPGDTLVTSIDAKVQSVVEAQLHKMIQTQRATLDPVTKRNFEADSGAAVVMEAKTGRIVALASQPTYDPSVWVGGITDKQLSRLYSEAAGTPLLSRAFQGQFAPGSTWKPFMTVGALTHGYTPDTTLNCSSAVQIGNRAFHNHESAAYGAISFARALEVSCNTFFFQVGMHFWQKLGSDPDDISARDPLVSQAEKFGFGSRTGVDLPGEASGRVADRKWKKAYYDSMKDYYCGIADKPQDAKTSDFVYKFSREFCIEGWKYKITDAANFAIGQGDTIVTPLQLARGYAAISNGGTLWEPRVGKAVVSPDGKVIREIKPKKERKLKIPRSVLRYLDEALQGVASRGTMAWKLGGFPLDKVTIRAKTGSAEVYGKQSTGWVASYTKDYVVVMMISQAGTGSGSTGEGVRAIWEALYGVDGEDVNENKAAIPGVTAPAALPLFGDDGSILPPARKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXX7</accession>
    <name>A0A0Q8UXX7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">SURF1-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_16045</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the SURF1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50122">
        <property type="protein sequence ID" value="KRC50122"/>
        <property type="gene ID" value="ASE19_16045"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd06662">
        <property type="entry name" value="SURF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002994">
        <property type="entry name" value="Surf1/Shy1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045214">
        <property type="entry name" value="Surf1/Surf4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23427">
        <property type="entry name" value="PTHR23427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02104">
        <property type="entry name" value="SURF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50895">
        <property type="entry name" value="SURF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="16"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="221"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="244"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="290" mass="31934" checksum="F0AA21276F67126A" modified="2016-01-20" version="1">MRSWLASWRFLLSRRWVLFFLAIILVGYGTWWLGEWQFGRLQDRKERNAYVAANELRDPVPLTDVLAPGKDVAEADEWKLVSVTGTYDVEDTVVVRYRTRKGMPGVEVVVPLVTSDGTAAIVDRGWFATDDPEIGPDDLPAPPAGEVTVTGWVRADGTGGSTTITGRSTRAINSGRIGEAIDRPVFTGFVALKAEDPAAETALEPVELPELGEGPHFFYGLQWWFFGVLGVGGFGYLAWDERTHGRRTERRRPRKGGPFSRQSPRDIPPSTGTITPDRKDAAGDSTNAAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYB8</accession>
    <name>A0A0Q8UYB8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Alkylhydroperoxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16780</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893721.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50252">
        <property type="protein sequence ID" value="KRC50252"/>
        <property type="gene ID" value="ASE19_16780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1893149at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029032">
        <property type="entry name" value="AhpD-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69118">
        <property type="entry name" value="SSF69118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="1" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="182" mass="19861" checksum="18E6E1DDC4F281CC" modified="2016-01-20" version="1">MGILKRIWVYVRVMRKARRHRGDLLGWLVRRPQLLLAQGGYETSLLLMGRMPAELKTLAVAKTAMIVNCEYCLDIGAEIARTEGIAEEKLVALLEPDGNPVLTDDEQLVVAFAAAVSASPAVVPDELRARLDARFSRAQLAELAAEVAWENQRARLNQALGVRPAGFSDGAFCLIPEAAPQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYG8</accession>
    <name>A0A0Q8UYG8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17025</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50298">
        <property type="protein sequence ID" value="KRC50298"/>
        <property type="gene ID" value="ASE19_17025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024747">
        <property type="entry name" value="Pyridox_Oxase-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12900">
        <property type="entry name" value="Pyridox_ox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="125" mass="13687" checksum="1796FED5722DA5DF" modified="2016-01-20" version="1">MLSDTECWDLLRTHTVGRIAWSGVEGVCVVPVNFAVDDGDVVLRTTPYSLMARDCVNREVGFEVDVLDQEAHLGWSVLVRGRCERQERPSVGPHPWVTGSRVLGLRITPRSVTGRRIVSSAGAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYS0</accession>
    <name>A0A0Q8UYS0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16695</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50239">
        <property type="protein sequence ID" value="KRC50239"/>
        <property type="gene ID" value="ASE19_16695"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043758">
        <property type="entry name" value="DUF5703"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18963">
        <property type="entry name" value="DUF5703"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="77" mass="8909" checksum="16B2559FCAC89B9C" modified="2016-01-20" version="1">MNVSMLRPGVMRGLGRGVEWEFERVTFDRALSRNVVAKLLVERAEHGGWELDRLQIGPDGRRRVVLRRKIIRAVRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ60</accession>
    <name>A0A0Q8UZ60_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptide deformylase</fullName>
            <shortName evidence="2">PDF</shortName>
            <ecNumber evidence="2">3.5.1.88</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Polypeptide deformylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">def</name>
        <name evidence="3" type="ORF">ASE19_16810</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + N-terminal N-formyl-L-methionyl-[peptide] = formate + N-terminal L-methionyl-[peptide]</text>
            <dbReference type="Rhea" id="RHEA:24420"/>
            <dbReference type="Rhea" id="RHEA-COMP:10639"/>
            <dbReference type="Rhea" id="RHEA-COMP:10640"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:49298"/>
            <dbReference type="ChEBI" id="CHEBI:64731"/>
            <dbReference type="EC" id="3.5.1.88"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="2">Binds 1 Fe(2+) ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the polypeptide deformylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.88" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50367">
        <property type="protein sequence ID" value="KRC50367"/>
        <property type="gene ID" value="ASE19_16810"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042586">
        <property type="term" value="F:peptide deformylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00487">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00163">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023635">
        <property type="entry name" value="Peptide_deformylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036821">
        <property type="entry name" value="Peptide_deformylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10458">
        <property type="entry name" value="PTHR10458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01327">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004749">
        <property type="entry name" value="Pep_def"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01576">
        <property type="entry name" value="PDEFORMYLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56420">
        <property type="entry name" value="SSF56420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00079">
        <property type="entry name" value="pept_deformyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="173" mass="18583" checksum="B03A8FF1F31231E0" modified="2016-01-20" version="1">MTRWGTPVMHRPQQQVTVFDDALRSLAADMVATMYAADGVGLAACQIGEDVAMFVFDCPDATGARTLGVVCNPVLELPEGKDRILDESPEGCLSYPGAFVDCARPDFAAVEGVGLDGQPVRFEGDGLLAKCLQHEADHTGGIVFGDRLSARSMKKLRKQHDAAADEYPAEWPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0T4</accession>
    <name>A0A0Q8V0T4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Elongation factor P</fullName>
            <shortName evidence="7">EF-P</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">efp</name>
        <name evidence="11" type="ORF">ASE19_19255</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Protein biosynthesis; polypeptide chain elongation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7 8">Belongs to the elongation factor P family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893429.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49027">
        <property type="protein sequence ID" value="KRC49027"/>
        <property type="gene ID" value="ASE19_19255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1260763at2"/>
    <dbReference type="UniPathway" id="UPA00345"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04470">
        <property type="entry name" value="S1_EF-P_repeat_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05794">
        <property type="entry name" value="S1_EF-P_repeat_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00141">
        <property type="entry name" value="EF_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015365">
        <property type="entry name" value="Elong-fact-P_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020599">
        <property type="entry name" value="Transl_elong_fac_P/YeiP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013185">
        <property type="entry name" value="Transl_elong_KOW-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001059">
        <property type="entry name" value="Transl_elong_P/YeiP_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013852">
        <property type="entry name" value="Transl_elong_P/YeiP_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011768">
        <property type="entry name" value="Transl_elongation_fac_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30053">
        <property type="entry name" value="PTHR30053"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01132">
        <property type="entry name" value="EFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08207">
        <property type="entry name" value="EFP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09285">
        <property type="entry name" value="Elong-fact-P_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005901">
        <property type="entry name" value="EF-P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01185">
        <property type="entry name" value="EFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00841">
        <property type="entry name" value="Elong-fact-P_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00038">
        <property type="entry name" value="efp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01275">
        <property type="entry name" value="EFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7 11" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="6 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EFP" evidence="10">
        <location>
            <begin position="67"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Elong-fact-P_C" evidence="9">
        <location>
            <begin position="129"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM01185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC49027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="188" mass="20658" checksum="678EE637713C2BBD" modified="2016-01-20" version="1">MATTNDLKNGMVLKLENQLWQVVEFQHVKPGKGPAFVRTKLKHVESGKNVDKTFNAGTKVETATVDRRSFQYLYNDGTNFVFMDVQDYDQIEVAPEIVGSAAGFLLENQDVVIATNEGRVLFIEMPASVELLVSYTEPGVVGDSATGRTKPATLETGAEIQVPLFIEQGEKIKVDTRDGGSYLSRVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1L1</accession>
    <name>A0A0Q8V1L1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_14865</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896441.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51374">
        <property type="protein sequence ID" value="KRC51374"/>
        <property type="gene ID" value="ASE19_14865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="165142at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07389">
        <property type="entry name" value="MPP_PhoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018946">
        <property type="entry name" value="PhoD-like_MPP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038607">
        <property type="entry name" value="PhoD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032093">
        <property type="entry name" value="PhoD_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09423">
        <property type="entry name" value="PhoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16655">
        <property type="entry name" value="PhoD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359621" evidence="1">
        <location>
            <begin position="36"/>
            <end position="560"/>
        </location>
    </feature>
    <feature type="domain" description="PhoD_N" evidence="3">
        <location>
            <begin position="42"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="PhoD" evidence="2">
        <location>
            <begin position="150"/>
            <end position="524"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC51374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="560" mass="60465" checksum="9D7C773B25B26542" modified="2016-01-20" version="1">MSDALNPALSRRVLVAGALGGGAALALASWPEAVAASAPFVHGVASGDPLPDGVVLWTRVTPSEEAAPGSGVGPDVAVTWAVALDAGFSNVVRTGTTLASASSDHTVHVDVTGLAPGTAYWYRFEALGSTSRPGRTRTAPATSSTAAVRLGVVSCANYDWGYFQPYKLLAARTDLDAVLHLGDYVYEYAPGGVIAGYPKNPRNAEPLHECLTLEDYRVRHGCYKLEQNLQDLHAAHPMIAVWDDHEIANDTWQGGAENHDPATEGDWATRATAGRKAFLEWLPIRHTDPDDWLRINRRIAFGQQVDLWMLDERRFRTQPPKSLLLGYGALGTGPSAADASMLGDEQEHWLVSGLAASTARWKVLGNQVPFFPQTLGPQVPGQITDLLGPDLSEKLAEPLLHLYVEDWNGFLAQRQRIIDGFAGIDDVVVLTGDVHQSYACEIPVRQDRYLLDRRSAAVEYVTPGVASPSVQTMVNQVAPGVGNLLDVILNTNAALSNPWIKYAEGFRTGCMIVDFSSTRVQADWYLVDKGTDPSSPIRWVASRQTKAGTARVVAAAQKLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V389</accession>
    <name>A0A0Q8V389_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Lactate 2-monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_19325</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893442.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49040">
        <property type="protein sequence ID" value="KRC49040"/>
        <property type="gene ID" value="ASE19_19325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1186741at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012133">
        <property type="entry name" value="Alpha-hydoxy_acid_DH_FMN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000262">
        <property type="entry name" value="FMN-dep_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037396">
        <property type="entry name" value="FMN_HAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008259">
        <property type="entry name" value="FMN_hydac_DH_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01070">
        <property type="entry name" value="FMN_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000138">
        <property type="entry name" value="Al-hdrx_acd_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00557">
        <property type="entry name" value="FMN_HYDROXY_ACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51349">
        <property type="entry name" value="FMN_HYDROXY_ACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0288">FMN</keyword>
    <keyword evidence="7" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN hydroxy acid dehydrogenase" evidence="6">
        <location>
            <begin position="18"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="281"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="97"/>
            <end position="99"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="257"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="279"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="281"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="284"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="312"/>
            <end position="316"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="335"/>
            <end position="336"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000138-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000138-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC49040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="385" mass="40515" checksum="2DD7A2FD4849D92C" modified="2016-01-20" version="1">MAFGDYQIELYLGALGGVLPAHPFDHAELERNALAALPPELRTYVAGGAGDEATQRANVEAFARYALVPRMFRASPERDLSVELFGRTLASPLLLAPVGVVGLCTADQHGDVHSAEVAAATGVPLIGSTLMSDPLEDVAAAAGDAGKWFQLYTPKNRELAASLVSRAEAAGYEAIVITLDTWVPGWRPRDLASGNFPQLRGKALANYTSDPVFQEMTGPDPDPGTVVMTWVGTFGHPVTWDDLPWLRSLTKLPILVKGVCHPDDARRALDEGVDGIYCSNHGGRQANGGGAALEWLPDVVAAVDGRGPVVFDSGVRTGADVVKAIALGADAVAIGRPYVYALALGGVPGAIHQVRALQAEADLVMAVDGYPTLADLTPEALRRLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3R4</accession>
    <name>A0A0Q8V3R4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-beta hydroxysteroid dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18440</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893294.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48893">
        <property type="protein sequence ID" value="KRC48893"/>
        <property type="gene ID" value="ASE19_18440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1928091at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13460">
        <property type="entry name" value="NAD_binding_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="1">
        <location>
            <begin position="7"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="29811" checksum="70F08EA9C41676CA" modified="2016-01-20" version="1">MKVFVTGATGNIGSAVVTELTAHSHQVIGLARSAASAAKLSSFGASSVRGGLSDLDVVRAAAADADGVIHLAFSNDFSSPQTLAAGIAEETAAIDAIGASMVGSDKPLVVCSGTPGIPGRASVETDPLLTEGPVGGRALTVTRTLALRNRGVRTSAVRLPRTVHQNGEGGFAGLLTQIARSSGVSGYPGDGTQRWPAVHSADAAALFRIALEAAPAGSSWHAVADEGDQVGEIANVIGRRLGVPVQPVPVEAYGPIGAIFALDQPASSLHTREKLGWEPTHPSLLEDLESIRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V447</accession>
    <name>A0A0Q8V447_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18470</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893298.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48897">
        <property type="protein sequence ID" value="KRC48897"/>
        <property type="gene ID" value="ASE19_18470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1239251at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidase" evidence="1">
        <location>
            <begin position="25"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="481" mass="51606" checksum="2537C191C9FC1095" modified="2016-01-20" version="1">MNEINTWSATRVASAVRSGDISSREAVEASLARLDEVEPITNAFEDRAEDALARADEADARRRRGEQLGPLHGVPIAVKDNHDVKGLPTTHGVPALAGLPPASETCPPVDRYVESGAIIIGRTRMPPFGMRWTTQSDFFGPTRNPHDPTVTAGASTGGGAAAVATGVVPIAQGNDIGGSLRYPATVCGVVALRPTVGMVPWWTSPQGLGMRVSSREFQVDGPIARHVEDLRLALSVVAKPDPRDPDATPGYAAARVTRPRIGVVLDPGDAPFAGSGTPEIEKSVREVAATLRSDGYEVDEIVVPQLGEAASLWLRLAFADFVLSGLGDQIDEFADEGMQFKFRSVVSLVEEAYGPTDLRAYLEGQERRSLIRRELSELMTRYPVLLLPNSGEPAFALGSDVTSRDRVHDLLRHQWPNLAVPFMALPGVGIATHVRPRQSPLGVQLIGRAFDEATLLDIAAALQERMPVPSPVEPVPPHATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5H1</accession>
    <name>A0A0Q8V5H1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNase III inhibitor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09635</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52684">
        <property type="protein sequence ID" value="KRC52684"/>
        <property type="gene ID" value="ASE19_09635"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002589">
        <property type="entry name" value="Macro_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01661">
        <property type="entry name" value="Macro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00506">
        <property type="entry name" value="A1pp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="SSF52949"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51154">
        <property type="entry name" value="MACRO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Macro" evidence="1">
        <location>
            <begin position="1"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="17309" checksum="74E9A36AA23FF814" modified="2016-01-20" version="1">MDIEVVEGDITQQDVDAVVNAANRAMRGGGGVDGAIHRAGGPAVLEDCRRRFPNGLATGDAGWTTAGLLPARWVIHVVGPNHHRGERDRSLLTSCYRRALEVADELGARSLAFPLVSAGSYGSPKEDAVDAALETLRGTPTHVELVRMVAFGRPAYDLIAGRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5T4</accession>
    <name>A0A0Q8V5T4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Bifunctional uroporphyrinogen-III C-methyltransferase/uroporphyrinogen-III synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_10200</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894713.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52780">
        <property type="protein sequence ID" value="KRC52780"/>
        <property type="gene ID" value="ASE19_10200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1185397at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004852">
        <property type="term" value="F:uroporphyrinogen-III synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033014">
        <property type="term" value="P:tetrapyrrole biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06578">
        <property type="entry name" value="HemD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10090">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036108">
        <property type="entry name" value="4pyrrol_syn_uPrphyn_synt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003754">
        <property type="entry name" value="4pyrrol_synth_uPrphyn_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003043">
        <property type="entry name" value="Uropor_MeTrfase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02602">
        <property type="entry name" value="HEM4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69618">
        <property type="entry name" value="SSF69618"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00839">
        <property type="entry name" value="SUMT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="6">
        <location>
            <begin position="22"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="HEM4" evidence="7">
        <location>
            <begin position="286"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="527"/>
            <end position="552"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="552" mass="58576" checksum="C203423D005367FB" modified="2016-01-20" version="1">MTRATTAQAAPTPAPQAKPGGVAFVGTGPGDPDLLTVRAVRLIEDADVVITEEPGHADMVQVVRARAAATGEETSDEVEFIDGGFGEDGQPLTHAARAKVVVKQAKRGVRVVRLLGGDPFLYASGPEEAQAVAKAGLGFEVVPGVSSVGAVPAYAGIPLTTKDHREVAVVTCGDKVDWTRYADTPTLVLLSAVGQIGDIAKQLIATGRSPQTPVAMTRVGTTTEQQTITSTLERIAADVRAARITPPAITVIGSVVDLREKLSWFETKPLFGWRVLVPRTKEQSASLSNRLREFGGVPEEVPTISVEPPRNPQQMDKAVRGLVEGRYEWIAFTSVNAVKAVREKFEEYGLDARAFSGLKIAAVGDKTAAAIAAWGLRADLVPSGEQSAAGLLEDWPEYDEQLDPINRVFLPRADIATENLVAGLIDLGWECDDVTAYRTVRAAPPPAPTRDAIKTGKFDAVVFTSSSTVRNLVGIAGKPHPSTVIAVIGPATAKTAQEHGLRVDVIAPQPDVDLLVEALAGFGSERRAAMVENGEPVTKPSDRKPSARRRKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5X7</accession>
    <name>A0A0Q8V5X7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10605</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894786.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52853">
        <property type="protein sequence ID" value="KRC52853"/>
        <property type="gene ID" value="ASE19_10605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="505342at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="389" mass="42810" checksum="393FC135820DA1C9" modified="2016-01-20" version="1">MSAALGLTAPLQAAIAEAEELIANAPFIRTEADRLEGYDYLAGRIRMAMQTAFDYDLEQPVFINPTHQFSRQGLDNPDAVYLNAYLREGVSYVVRGRRGTSADLSFQVMGGMYSADSAATSLMAFDDRELSIDADGSFEFTYVAEPGAKTLIVREVFNDWDTEARGTLTIERTDTLGRARKPLTEELLRKKYEVAARSLTSSIQTWFAFPHFFQYKEPVNTLTAPASTPGGLSSQFSSIGHYELADDEAMIVSVPHCDDCTYQAIQIGSDWYASTDYETHQTSLTKAQAVADPDAVMRFVISERPPALLDGAPAPAANWLETTGHRTGPIMLRWQQLTRALSAADGPTVEVVPVAEVAKRLPDLVGLTAEEYAARITARQRAIARRMIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V631</accession>
    <name>A0A0Q8V631_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FlgD_ig domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52692">
        <property type="protein sequence ID" value="KRC52692"/>
        <property type="gene ID" value="ASE19_09675"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025965">
        <property type="entry name" value="FlgD_Ig"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13860">
        <property type="entry name" value="FlgD_ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FlgD_ig" evidence="1">
        <location>
            <begin position="128"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="324" mass="35161" checksum="C205909602850956" modified="2016-01-20" version="1">MTVVAGPARAATPPVLVAPVDGSQVELGFTGPVQLDLGGSGDWFDVRVAGPSGVIAETSLYGYDTVEGFDVPALVEGGDYRVQVWSYEIDGWATIGSFSADWAPLTLSDPVVSPTTFYPLVRDGYRDRVRFSITLNQHADVTTIVRNSAGRTVRIFSRGLHRGRRSVEWNGLTTTGAKVPAGRYKITVEAQNGAGESRSISRTVTAATAVVTKTATKRRGAAQASPSTRGSCYITWEDGSAELDCWGGRYARMSFGFAIPASAWDLHWSVSGERSSLDRCCNGTIRKTGTRPSRSRYVVTTTVSGWRAFWVHSATLRYKYRARI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6M3</accession>
    <name>A0A0Q8V6M3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">4-hydroxyphenylpyruvate dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_11730</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
        <text evidence="5">Binds 1 Fe cation per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the 4HPPD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894982.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53052">
        <property type="protein sequence ID" value="KRC53052"/>
        <property type="gene ID" value="ASE19_11730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="402639at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003868">
        <property type="term" value="F:4-hydroxyphenylpyruvate dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009072">
        <property type="term" value="P:aromatic amino acid family metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07250">
        <property type="entry name" value="HPPD_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd08342">
        <property type="entry name" value="HPPD_N_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005956">
        <property type="entry name" value="4OHPhenylPyrv_dOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041735">
        <property type="entry name" value="4OHPhenylPyrv_dOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041736">
        <property type="entry name" value="4OHPhenylPyrv_dOase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11959">
        <property type="entry name" value="PTHR11959"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009283">
        <property type="entry name" value="HPP_dOase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01263">
        <property type="entry name" value="4HPPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="4 5" id="KW-0408">Iron</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="VOC" evidence="6">
        <location>
            <begin position="41"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="VOC" evidence="6">
        <location>
            <begin position="202"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="288"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="369"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR009283-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="401" mass="44927" checksum="532B3D229ECBBB9B" modified="2016-01-20" version="1">MSLQETLTSEERLAELDLDTLKQLVGLVEYDDREDPFPVTGWDAAVWAVGNATQSAHFFVSAFGMELVAYSGPETGNRDHVAFVLKSGAVRFVLKGGVDPSSPILDHHRKHGDGIVDIALEVPDVDKCIEHARSVGATVLEEPHDVTDEHGTVRIAAIATYGDTRHSLVDRSRYDGPYLPGYVARTSTFRKREGAPKRLFQALDHIVGNVELGRMDEWVEFYRKVMGFTNMAEFIGDDIATDYSALMSKVVANGNHRVKFPLNEPAIAKKRSQIDEYLEFYDGPGAQHLALATNDILDTVDRLRAEGVEFLATPDSYYEDPELRARIGEVRVPVEELQKRGILVDRDEDGYLLQIFTKPLGDRPTVFFELIERHGSLGFGKGNFKALFEAIEREQERRGNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6S1</accession>
    <name>A0A0Q8V6S1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15455</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893486.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50017">
        <property type="protein sequence ID" value="KRC50017"/>
        <property type="gene ID" value="ASE19_15455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013107">
        <property type="entry name" value="Acyl-CoA_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08028">
        <property type="entry name" value="Acyl-CoA_dh_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="1">
        <location>
            <begin position="7"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_2" evidence="2">
        <location>
            <begin position="241"/>
            <end position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="395" mass="43280" checksum="D0258562CD1E89CC" modified="2016-01-20" version="1">MHDDFSPEVTAVLDGVRDLLPTFRERAEEGDRLRVIPDASIKELEETGFFRLLQPKRYGGLEADPIAFYTAVRDIASADGSTGWVSSVVGVHPWQVALFADEAQQAVWGDDQSVRLSSSYAPTGKAVITDGGFKLSGKWSFSSGSDHCAWVLLGGLVFNEEGQVVDFRTFMVPREKYQVVDVWNVVGLRGTGSNDIVVEETFIPEAFTLSMGETGACRGPGQAVNTSDLYKLPFHSIFTSTIATPIIGMAKGAYAEHVEMQQKRVRAAYLGEKASLDPFAAVRIARASSEIDAAWALLMNNIREEQAHVAKGEQIPLELRLRVRRDQVLGTARSIEAIDALFEASGGRALAEGTYLQRAWRDAHAGRVHAANDPERALQMYGGQQFGHKVDPGMY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6W9</accession>
    <name>A0A0Q8V6W9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PepX_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10835</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894827.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52895">
        <property type="protein sequence ID" value="KRC52895"/>
        <property type="gene ID" value="ASE19_10835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="327988at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008239">
        <property type="term" value="F:dipeptidyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005674">
        <property type="entry name" value="CocE/Ser_esterase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000383">
        <property type="entry name" value="Xaa-Pro-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013736">
        <property type="entry name" value="Xaa-Pro_dipept_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02129">
        <property type="entry name" value="Peptidase_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08530">
        <property type="entry name" value="PepX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00939">
        <property type="entry name" value="PepX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00976">
        <property type="entry name" value="NonD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359748" description="PepX_C domain-containing protein" evidence="1">
        <location>
            <begin position="32"/>
            <end position="638"/>
        </location>
    </feature>
    <feature type="domain" description="PepX_C" evidence="2">
        <location>
            <begin position="367"/>
            <end position="633"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="638" mass="66728" checksum="211594C77EBADC39" modified="2016-01-20" version="1">MKVRLPRPVAALAGAVLAAATLVPAAPPAQAAPAATAAPAATASVPTAVAAAAGGWTPRGEQYSQTVTTRDLAITMDDGVILRGDLQRPATADGKPVTTRLPVIVTITAYNKLVLSAGGGAVLAGADPGYLVKRGYAQLTVDARGTGTSQGQWAAFSAREGKDAGAIVDWAARQPWSNGKVGMTGASYMGISQLLAAAQQPAGLKAIFPQVPAADVYRDVVASGGQIDVGFIPLWLGLVTVTGVIPPAYGLQEPAAGFKMATDHLMGGLGFTLPLAVQALLGGSPAYDGPFYRERSPITTINKVKVPTFFVGGEYDLFQRGTPLDFEALQRNGVPTKFILGPWDHLQGSSGAEVAKAGYGTLAELQLRWFDHYIKGRDGQLASIAPLTYYEQGTGKWVRKAKWIDSDLSARVYKLSGSSAVGGRTGGLVTGTPAAGSSIVPPIPVTGLCTRSANQWTAGVANMLLKDFPCFTNNKLNDYGGLTFDTPPVTRAVRLQGPVNARLYVSTPTGDGMLSVAIEDVAPDGSVHRITGGWQVISHRTLDTARSRYLDGKLLQPYHPFTKATQSKLPSGQVAPVDVEVFPTGAAIQPGHRLRIAVQAFDVPHLLSPLTDLLSQLVPVTVRTGTAYPSSITLAVRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Z3</accession>
    <name>A0A0Q8V6Z3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Rieske-type oxygenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_16960</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893754.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50285">
        <property type="protein sequence ID" value="KRC50285"/>
        <property type="gene ID" value="ASE19_16960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="691776at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008203">
        <property type="term" value="P:cholesterol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045605">
        <property type="entry name" value="KshA-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19298">
        <property type="entry name" value="KshA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0753">Steroid metabolism</keyword>
    <feature type="domain" description="Rieske" evidence="8">
        <location>
            <begin position="27"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00030944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC50285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="45020" checksum="0AF62C555261644F" modified="2016-01-20" version="1">MSDAQTGTTEVRHIKHEAVPTRFARGWHCIGLEKDFKDGKPHSIEAFGTKLVVWADSQGELKVLDGYCRHMGGDLSQGTVKGDEVACPFHDWRWGGDGRCKQIPYSRRVPLRARTRTWHAMTQDGMVFVWHDHEGNPPIAEQAIPAIEGGPSDPTWTDWAWAQTVVDTNCREIIDNVVDMAHFFYVHHAFPTYFKNTFEGHTATQLQKGVNRDDMRPAEVAIGAPKRLGNTSVATYHGPSFMIDDLIYHYEHGDTRTVLINCHYPIDENSFVLMYGISMQRPEVEDDDPAAAEALAAKMVATVRLGFEQDVEIWRNKTRIDNPLLCEEDGPVYQVRRWYEQFYVDVADVRAEMTDRFEFELDTAKPIEAWQREVDENVARRAAEAAEAAALQPQDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V771</accession>
    <name>A0A0Q8V771_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12685</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895677.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53214">
        <property type="protein sequence ID" value="KRC53214"/>
        <property type="gene ID" value="ASE19_12685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1666209at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="16669" checksum="FE4DB757E1FB2983" modified="2016-01-20" version="1">MSEWDDLNGLDDDALMALLGEAVVETDAVSERRRQAARAAFTWRSVDDELAELLHDSALDAGAAVRSSASGPRSLAFGRSGLTLEVEVDGDQLLGEVVASGSADAAADSATVTLQRPDAADEVVSVDAAGFFRFSGVGAGAVRFVVEQGGWSLTTPWVNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7I8</accession>
    <name>A0A0Q8V7I8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12930</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895720.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53258">
        <property type="protein sequence ID" value="KRC53258"/>
        <property type="gene ID" value="ASE19_12930"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359772" evidence="2">
        <location>
            <begin position="26"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="252" mass="25987" checksum="AE946AA751413D3C" modified="2016-01-20" version="1">MKTSLGPAALSAVLSLAVVGLAGCGDDEPTAVPDPAPTRTSTSSSDEPDEAAPEQAITVEGPADLVRIFTEKEVAQLPAGTPTVADDGTELSAQLLERDGKDLLQVQDGTEVMTATIPEDSDTPYLLDVQLELGQAGAGWIVGHEGGDSTRLQVYVVRDGELVAARTSGGDPDLGGGFTADGGSRTTWFSEAGGPWTRVATGKPDQYRLYRWAVSGPGEGGGTDDLAPLLRAEDLGTACMAESATSIVVRRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7K9</accession>
    <name>A0A0Q8V7K9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12445</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895106.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53179">
        <property type="protein sequence ID" value="KRC53179"/>
        <property type="gene ID" value="ASE19_12445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1031920at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010559">
        <property type="entry name" value="Sig_transdc_His_kin_internal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06580">
        <property type="entry name" value="His_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="His_kinase" evidence="1">
        <location>
            <begin position="168"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06580"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="371" mass="39882" checksum="631C3364B5829EE3" modified="2016-01-20" version="1">MARLWRRGHLGSDADRAAFRALHQASLASPALREGLTAASAERAIRHLRTLLGTPALAITDTEAVLAWDGVGAHHLDQAAVVGLLAIEKGSTRTVDRSQLGCSEPGCPVRTGVVSPLVVEGRVLGTVQAFSPTPTAGLVRATEEVAEWVSGQLALAELDAHRNRMIEAEVRALRAQISPHFVYNSLNAIASFVRTDPDRARELLLEFADFTRYSFRRHGEFTTLAEELNSIERYLLLEQARFGDRLQVTLNVAPEVLPVVVPFLCIQPLVENAVRHGLEGADQTGLLTINAHDRGHEALIEVEDNGVGEDPDKVRRALAGDASLDSVGLGNVDARLRATFGDDYGLVVETAPGAGTKVIVRVPKFAAGVSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7X4</accession>
    <name>A0A0Q8V7X4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">4,5-9,10-diseco-3-hydroxy-5,9, 17-trioxoandrosta-1(10),2-diene-4-oate hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893487.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50018">
        <property type="protein sequence ID" value="KRC50018"/>
        <property type="gene ID" value="ASE19_15460"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="42"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="301" mass="32829" checksum="A6F2EDBD13F00915" modified="2016-01-20" version="1">MTADNAAFSKEATRRSAKAGDITLNYYEAGPEGGSQVGGGLPFVLLHGGGPGASAWSNFGSALPKFAASFRTLLVDQPGFGQSDKPEVGANYFRHSASYLVQLLDELQIERVHLLGNSLGGGTATRFALEYPDRVGRLVLMGPGGLSTNLFHADPTEGVKRLMDFSMNPSREALRAFISTMVVNQALVTDELVEERFADATAPGSLEAMRSMGASFWNPEWAEDGMLWREAHRLRKHTLLTWGREDRVNPLDGALVALKQIPKAQLHVFPNCGHWAQIEAADEFAEICTAFLARHVERTRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7X8</accession>
    <name>A0A0Q8V7X8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ribonuclease BN</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_12990</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53268">
        <property type="protein sequence ID" value="KRC53268"/>
        <property type="gene ID" value="ASE19_12990"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017039">
        <property type="entry name" value="Virul_fac_BrkB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30213">
        <property type="entry name" value="PTHR30213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03631">
        <property type="entry name" value="Virul_fac_BrkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="20"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="129"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="162"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="196"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="237"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="333"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="3">
        <location>
            <begin position="340"/>
            <end position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="359" mass="38900" checksum="53B415D4BADC9615" modified="2016-01-20" version="1">MFGFPLAVIYKFFDDQGNYLAAILTFYAFLSIFPLLLLATSILGFILDGRPALQEQVLDSALGQFPIIGDALGRPEGIQGSTGGIIVGSLTALYGALGLGLALQNVQSAAWAVPRNSRPHPVMTRVNSLFLLLVAGLAIFGISVGSVLLTETNLVGSLSRHGWFHWLVRLVTIGLLGSLMTVLLRMAAARAIRDRGIRAAPGGFTVAVLWQFLQWIGTAYATNVIASAENNSMNQTFGLVLGLMGLLYIGAVMGVLGIEVNVVLARRLWPRALLTPFTDSVDLTEADRRAYAMYAQMQRHKGFETVAVRFEGRDGDTHDIVLDPRTEKVIKQHLPGMPPRPEAVDEPTQPFQLPPPPAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8B1</accession>
    <name>A0A0Q8V8B1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Iron ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14360</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896989.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53514">
        <property type="protein sequence ID" value="KRC53514"/>
        <property type="gene ID" value="ASE19_14360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359805" evidence="1">
        <location>
            <begin position="34"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="2">
        <location>
            <begin position="58"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="328" mass="34187" checksum="223386297741723C" modified="2016-01-20" version="1">MTSSRRTRILPALLALPLALTACGGAPEPDAKAVAGSDYPVEASSCGYTSTISAPPERAVTMNQGATEVMLALGLQDSMAGTAYLDDAVPAKWKAAYDAVDVLSKEYPDNETLLEADPDFVYGSYASAFGDGAAGPQDELEKLGIGSFLSLFGCGENKPSADVSFDSVWDEIGTVAHVFDVPERAAALEDEQEQALADLASSRPGDGLDVFWFDSGDKTAFAGAGEGGPQLILDAVGATNVFADVEGGWADVSWERVVKVDPDVIVLADASWSTAKDKIAMLEKDPVLKNLRAVKAKAYVVLPFSETTPGVRLADGAVSVGAQLSELG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8C0</accession>
    <name>A0A0Q8V8C0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribosomal RNA small subunit methyltransferase G</fullName>
            <ecNumber evidence="2">2.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">16S rRNA 7-methylguanosine methyltransferase</fullName>
            <shortName evidence="2">16S rRNA m7G methyltransferase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rsmG</name>
        <name evidence="4" type="ORF">ASE19_14000</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Specifically methylates the N7 position of a guanine in 16S rRNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897055.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53448">
        <property type="protein sequence ID" value="KRC53448"/>
        <property type="gene ID" value="ASE19_14000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1590629at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070043">
        <property type="term" value="F:rRNA (guanine-N7-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00074">
        <property type="entry name" value="16SrRNA_methyltr_G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003682">
        <property type="entry name" value="rRNA_ssu_MeTfrase_G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31760">
        <property type="entry name" value="PTHR31760"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02527">
        <property type="entry name" value="GidB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00138">
        <property type="entry name" value="rsmG_gidB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="223"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="250" mass="26348" checksum="414C58694A91A699" modified="2016-01-20" version="1">MTEDESVPGLPSPPPAVTTLFPESRVDAAVAYAELLATDGVVRGLIGPREAPRLWERHVLNCALLAPALPPNARVADIGSGAGLPGLVLAIARPDITITLIEPLLRRTTFLEEAVATLDLTNVVVVRGRADALHGSTDFDVVTSRAVAPLGRLLEWSMPLVAPHGALVAMKGSSAPEEIEAAAPELARLGCSAPVVETLGSGDAALPDVSPIRVVRVTWADPARVSLPSRPQRGPRDPRPSRGRNKRRKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V918</accession>
    <name>A0A0Q8V918_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Protein translocase subunit SecE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">secE</name>
        <name evidence="9" type="ORF">ASE19_09785</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Component of the Sec protein translocase complex. Heterotrimer consisting of SecY, SecE and SecG subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. Interacts with SecDF, and other proteins may be involved. Interacts with SecA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the SecE/SEC61-gamma family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895156.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53604">
        <property type="protein sequence ID" value="KRC53604"/>
        <property type="gene ID" value="ASE19_09785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1974284at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008320">
        <property type="term" value="F:protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1030">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00422">
        <property type="entry name" value="SecE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005807">
        <property type="entry name" value="SecE_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038379">
        <property type="entry name" value="SecE_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001901">
        <property type="entry name" value="Translocase_SecE/Sec61-g"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33910">
        <property type="entry name" value="PTHR33910"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00584">
        <property type="entry name" value="SecE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00964">
        <property type="entry name" value="secE_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0811">Translocation</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="47"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00422"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="86" mass="9380" checksum="0CDDC48EC15618C3" modified="2016-01-20" version="1">MSDAPAVGGRKDSSGGKQPEKRTGPVTFYRQVVAELRKVVYPTRDQLVTYFFVVLAFVLVMIALVSLLDLGLGKLAFEVFTGADDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9K4</accession>
    <name>A0A0Q8V9K4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GntR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895312.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53880">
        <property type="protein sequence ID" value="KRC53880"/>
        <property type="gene ID" value="ASE19_07295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1775418at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1410.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028978">
        <property type="entry name" value="Chorismate_lyase_/UTRA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011663">
        <property type="entry name" value="UTRA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07702">
        <property type="entry name" value="UTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00866">
        <property type="entry name" value="UTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64288">
        <property type="entry name" value="SSF64288"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="1">
        <location>
            <begin position="5"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="263" mass="28137" checksum="A8C1D4C751C69F19" modified="2016-01-20" version="1">MATEHAVAETLRRRMLTDIGAGALPPGARLGSERELSEHYGVSRATLRQVLAALEEAGLVRRVAGRGGGTFINHAKVEHDLTKVVGVPAYLARQGYSAGTRVVATRMGVADAPTRRALQLSDGDLVVDVRRLRLADGTPFSLDHARFPADRFPGLLEQPLGGSLYELIEHDYGVAIADAEEVVEVVHATDEEAALLTVAVGDPLVSITRTTYDTTGTAIEFSHDLLRSDRVRITMRTPGRGLRGMPGGDSPHFATISTVPATD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9R3</accession>
    <name>A0A0Q8V9R3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Sodium:solute symporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_07225</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895299.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53867">
        <property type="protein sequence ID" value="KRC53867"/>
        <property type="gene ID" value="ASE19_07225"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1730.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038377">
        <property type="entry name" value="Na/Glc_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001734">
        <property type="entry name" value="Na/solute_symporter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00474">
        <property type="entry name" value="SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50283">
        <property type="entry name" value="NA_SOLUT_SYMP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="127"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="157"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="187"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="240"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="280"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="323"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="371"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="403"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="427"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="457"/>
            <end position="478"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="507" mass="54617" checksum="994E483B4CDC7AD6" modified="2016-01-20" version="1">MSTMTGSMAVTLGLLTAFFALIVFVLYATNRSAKSFSDYAVGGRSFSSWYIAMSYTNSWWPGATYTAFFGLSASAGVLGFYALAYSLLGVTAMYLMAERAWLWGKRYDLKTQPDMLGLRFQSPAVRVIASAIGVVCLFPWIVLGMQAMGLIFRFASFGQWSVTTCLVVGVAVIAVRQIWTVQMGMRGLVITDLVQGIVAYGLAALVCLGILFGPADSAGFGAVTDLPDALLHVPGDGGAYGHWYLFSLIVTGVIGSLCWPTSYQRIYTAKGVRSVKKGTLQTMVVAGGFYLMLTLVALAAASMTDIAAAPQDGWFTLLYDRGGQWLLGMALVIVLAASMGWIDGCVQVCGAQIANDIVHVISPRTDFQLKVVAKGSMVVYMLASAIVAYIAFDYPRLQLLAQMSYQGIVQLSVPMFLGMFWKRGTKVAALASMCTGFLVAAVLTWQHPDDMPGLGSLTSGVVALGVNLVVYVVLAYLLPQSDQERRRIDELFEAGKSRPEPDLTPAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9U2</accession>
    <name>A0A0Q8V9U2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896504.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51437">
        <property type="protein sequence ID" value="KRC51437"/>
        <property type="gene ID" value="ASE19_15240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1265024at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021555">
        <property type="entry name" value="DUF3000"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11452">
        <property type="entry name" value="DUF3000"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="204" mass="21584" checksum="0967E7D9B730108F" modified="2016-01-20" version="1">MVARQETHQGSGAAGTPREFTQAVDSLRAATFRPEVFCEEMPAPQRIAPYATALSADVTVDDEEVATGRLVVLHDPAGNDAWEGTFRCVAYCRAEIDSDLATDPLLTDVGWTWLTDALQAHGAEYVAESGTVTRVATESYGSMAGEAGSAQLEIRASWTPVETTDLTAHAEAWGELMCTAGGLEPVPDGVAVMPSRRGQRGGAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9V3</accession>
    <name>A0A0Q8V9V3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08615</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895542.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54110">
        <property type="protein sequence ID" value="KRC54110"/>
        <property type="gene ID" value="ASE19_08615"/>
    </dbReference>
    <dbReference type="OrthoDB" id="721431at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="37"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="34334" checksum="81F16247B4C94612" modified="2016-01-20" version="1">MATPHDLLVAVDGDRVHARHHRSPSDELAATQGRPCVVMAHGIGATQDSGLDGFVAAMNVAGIDVITFDYRHFAASSGEPRQLVDPARQIADYHAVIAAARRTDGVDPERIVAWGVSFSGGHVFQVAADDARLAAMVALTPAPDGRAVALDMARSRGLGFLARMGGLALRDAVAARRGRPAVTVPVVGPPGSVAALTSPGAEEGMRRVAGPTWRNEFAARVFLTIASYRPVRAAGEVVCRALVQIADLDGSAPPRPAAIAAERARATVHHYPCDHFDVYTGEPWHEKVCDDQVRFLRRVLRVAPAVEAGPRPKRTRRAAGATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA51</accession>
    <name>A0A0Q8VA51_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07925</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895427.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53995">
        <property type="protein sequence ID" value="KRC53995"/>
        <property type="gene ID" value="ASE19_07925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2036240at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="322" mass="33829" checksum="C8E95679C0A2F0DB" modified="2016-01-20" version="1">MRAPVLPVWAAVLVLGAGALAGCGDDRQDLDPVAGRYEAGASGDTVTVELPVGAVVLTIGDGADSVADDRAADGTQHDATGDHRYVPVSARLEDSAEEGVSDLVGGAALVADLRVELGSRSVALPTPYAVDEGRVRRAPTTTWVPMTSDERDELTVTVSYDGLEQRIDADGQREPSAADAYYDGRAGRGDGEDCGRGWETRAGSTVEVRCRTAPTFSPYLPGLGWAAQGRTFVAVDIRINVVDVRVGGRVPPFSRLHLDTTLDDGEAVLPDPSIGAAPTPDTAATLVTTRYFDLPVDESAVMVLDADLWGVDARRSVSIARD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAP9</accession>
    <name>A0A0Q8VAP9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aldehyde dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_08900</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3 6">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895591.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54159">
        <property type="protein sequence ID" value="KRC54159"/>
        <property type="gene ID" value="ASE19_08900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="744602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006081">
        <property type="term" value="P:cellular aldehyde metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012394">
        <property type="entry name" value="Aldehyde_DH_NAD(P)"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036492">
        <property type="entry name" value="ALDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="7">
        <location>
            <begin position="18"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="active site" evidence="4 5">
        <location>
            <position position="254"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR036492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR036492-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC54159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="503" mass="53741" checksum="6B2B47E2C37C0559" modified="2016-01-20" version="1">MTVTHHSMIIGGEEVDTSEQLEIVDPSTGEVVATVARGDESHIDLAVESGRKAFDAGDWSRAAPAERAAVLRNLANLLGDNIEEMVEAEIQANGATVRQATGFHVGLAAPHLEYFAQLADSYEWETPTRIAAFPTIGQSTVRREPIGVVGAVAPWNFPLLLGLWKMAPALAAGNSVVIKPDERTPLSTLLFARLALEAGVPAGVLNVVPGIGHVAGARLAAHPGVGKIGFTGSTQVGREIMRTSADTLKGVTLELGGKSPAIVLDDADLDTTVDGLLWGCMLYSGQICMSMTRALVPEHRKDEFVDRLVERASTIQLGGTRDWETDMGPIVSARQHQRVLGYIESGKAEGATLALGGGVPEVEGFEGGYYVEPTIFSDVTPDMTIAREEIFGPVLSVLTYRTEAEAVEIANDSEYGLASSIWTADNSRALQMAGQVQAGTVWINDAHKINVEVPFGGYKQSGVGRELGPHALDHYTEVKDVYLDLSNDKAARPWDVLLSHADD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAX7</accession>
    <name>A0A0Q8VAX7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08695</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895655.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54223">
        <property type="protein sequence ID" value="KRC54223"/>
        <property type="gene ID" value="ASE19_08695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1968258at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="64" mass="7407" checksum="EF0ECD72457EC018" modified="2016-01-20" version="1">MVESEFASIAVRLDREGNSVRLRVEDLRTGRVRHLDALELESIVWLGEGHLTQLLDPSHERWRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBY2</accession>
    <name>A0A0Q8VBY2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Enoyl-CoA hydratase 2</fullName>
            <ecNumber evidence="1">4.2.1.119</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Enoyl-CoA hydratase 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_04410</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a (3R)-3-hydroxyacyl-CoA = a (2E)-enoyl-CoA + H2O</text>
            <dbReference type="Rhea" id="RHEA:26526"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57319"/>
            <dbReference type="ChEBI" id="CHEBI:58856"/>
            <dbReference type="EC" id="4.2.1.119"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.119" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894351.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54730">
        <property type="protein sequence ID" value="KRC54730"/>
        <property type="gene ID" value="ASE19_04410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1380653at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03450">
        <property type="entry name" value="NodN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002539">
        <property type="entry name" value="MaoC-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039375">
        <property type="entry name" value="NodN-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01575">
        <property type="entry name" value="MaoC_dehydratas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC-like" evidence="5">
        <location>
            <begin position="11"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00029334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00030115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="16185" checksum="1BB6A05F8BBE957A" modified="2016-01-20" version="1">MRTFEDIAHLQQAVGTHLGYSEWHTITQEQINTFARATGDHQWIHVDPVEASTGPFGTTIAHGYLTLSLVPQLIWEIYDVKGVKMGVNYGAEKLRFPAPVPVDSKVRAGVELLSVVPAGGGHKVNALVILEREGGDKPVCVVETVSMLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC18</accession>
    <name>A0A0Q8VC18_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04425</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894349.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54732">
        <property type="protein sequence ID" value="KRC54732"/>
        <property type="gene ID" value="ASE19_04425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="324612at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="140"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="585"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="593"/>
            <end position="609"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="609" mass="66405" checksum="E9649F349E9E4940" modified="2016-01-20" version="1">MSTLGISDGAAAWALDLEHALTTRSADALLGLFAEQSDLRDNGALTWDFRQFHGRDAVVSMLLSVLDEIQPTGFSVSSAWPEPQVVGEGDDAMVEAFFDFDTKSGRAVALINATPDETSAYGFAVRAMYTRLEELKDVRAPDRHPRGNGFTPSYRGQTFGEHDRRRRDWAEGSPEVLIVGGGQAGLVAAAHLAKVGVDALIIDKNERVGDNWRLRYDSLCLHNTVEMNAFPFLSYPPHYPEFLPKDVMGDWLETYARYLNLNVWNSAEFLGAKYADEDGLWAATVQRSDGSERVLHPQHIILATGGIGGRPSVPTLPGLSSFRGQVIHSSAYTKAADFDVRKAVVVGTATSAHDIALDLYENGVEVTMVQRGPVVVNQVETANLVYAEHLDPTIPTDLVDLRDGMTQVRPIREAGLRQYHSFAKSLDSDLLKGLEGAGMRIGDGFDGQGWPDLFQRTGGGFYLNKGASDVIIAGGIKILPFDRVVEFAEAGADLDDGTTLDADIVILATGYQNRQVEVADQFGAEVAERVGEIARWDEEGEWSAMWGQTGQRGLWINGGAILQIRPATRLMALLVKADLDGRIPESFRRRPKSASDSGLTSKNAPQASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC19</accession>
    <name>A0A0Q8VC19_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04935</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894267.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54814">
        <property type="protein sequence ID" value="KRC54814"/>
        <property type="gene ID" value="ASE19_04935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1186478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="253" mass="27187" checksum="97DBCE2C5D7234F8" modified="2016-01-20" version="1">MSTALVTGATAGIGLEFARQLAARGDDLVLVARDTARLESVAADLRTSYRVGVEVLPADLTDAAQLATVEARLADRARPVDLVVNNAGFGLKERFLDNPVDVEQAQQDVLVRAVLRLTHAALGGMVERGHGGVINVSSVAAFLPRGTYSAAKAWVNSFSAWAHNEYAGQGVTVMALCPGFVRTEFHERLGVDRDSSAPKPLWLEADRLVREALADFDKGRAMSIPSKRYKAIVAASRVVPRSGLQRLQSLGRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC50</accession>
    <name>A0A0Q8VC50_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04615</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894318.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54764">
        <property type="protein sequence ID" value="KRC54764"/>
        <property type="gene ID" value="ASE19_04615"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1699910at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="122" mass="13447" checksum="8D4725F33A008AA8" modified="2016-01-20" version="1">MSTKRVYEYARLWVPLYDAAALAVTRPVYLIEAADGFEGIAAEKNTTLMGLFNELGRHGWRIEGTALRIDHPSPEFQMLIDVTLDEADHAVSPDEVAHAVGTGGDPAGAVTEFDVYAMRRRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCC3</accession>
    <name>A0A0Q8VCC3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metal-dependent hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04515</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894335.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54747">
        <property type="protein sequence ID" value="KRC54747"/>
        <property type="gene ID" value="ASE19_04515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1301886at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002725">
        <property type="entry name" value="YgjP-like_metallopeptidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01863">
        <property type="entry name" value="DUF45"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF45" evidence="1">
        <location>
            <begin position="55"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="188" mass="21686" checksum="908F36904F8A8EE6" modified="2016-01-20" version="1">MGARSRPRVEVRRSDKRRRTVSAYRDGAKIIVLVPDNLTGDEERAWVSKMVARIERKEMRAAPRKWDDADLMARAQELSDAYLGGLAVPESVRWVGNQRSRWGSCTPRDRTIRLSERLQRMPEWVVDYVIVHELAHLIEPQHDEKFWGWVAHYPATERAKGYLAGWSDAARMPRPPSHEVYPAGDAVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCM5</accession>
    <name>A0A0Q8VCM5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06015</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894077.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54997">
        <property type="protein sequence ID" value="KRC54997"/>
        <property type="gene ID" value="ASE19_06015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="678616at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13970">
        <property type="entry name" value="ABC1_ADCK3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004147">
        <property type="entry name" value="ABC1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034646">
        <property type="entry name" value="ADCK3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03109">
        <property type="entry name" value="ABC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC1" evidence="1">
        <location>
            <begin position="93"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="448" mass="49007" checksum="6200B1014FAE431F" modified="2016-01-20" version="1">MADLPRKAAARTARLAALPLGYAGRTAVGFGKRLGGAPAEAVMSEIQQRTAEQLFRTLGELKGGAMKFGQALSVLESALPEEMAAPYREQLTKLQDSAPPMPTQIVRDILAADLGADWKERLTWLDGAPTAAASIGQVHEGRWHDGRRVAVKVQYPNAGDALMADLRTLARAARAIGPLIPGVDMKPLVEEVQARAREELDYELEAEAQRVFAATFRDDPFIVVPDVVEVGPRVLVTEWLDSAGSLATIIAGGTQEERDHYGEVFTRFLFSGPARTGLLHADPHPGNFRVIPNADGTPGRMGVLDYGAVARLPGRGLPEPMGRFITLCAAGDGDALIAGLREEGFLKDRIRIDPQLLMDYLSPFVDPTLVERFRFSREWMREQFQRINNPRDPAYTVSIKLNLPPSYVLIHRTWLGGVGVLSQLEAEAPFRAIMSEFVPGFAPARLED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCP2</accession>
    <name>A0A0Q8VCP2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Spermidine/putrescine ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_13865</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897076.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53427">
        <property type="protein sequence ID" value="KRC53427"/>
        <property type="gene ID" value="ASE19_13865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1200451at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="22"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="54"/>
            <end position="61"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="360" mass="38767" checksum="6F605AF6E8418A6D" modified="2016-01-20" version="1">MTQATTPPAAAPAATGAPQTAIRLRGLQKHFGDVAAVDGVDLDIADGEFFSMLGPSGSGKTTVLRLIAGFESASAGTVELGGVDVTKAAPFERDVHTVFQDYALFPHMSVLDNVAYGLRVRGMAKKQRRERAQQALDTVRLGHLGSRRPTQLSGGQRQRVALARAIVLEPRVLLLDEPLGALDLKLREQMQVELKQLQRELGITFVFVTHDQEEALTLSDRIAVFDAGRIQQLGTPQEIYEQPSSAYVAGFVGTTNLLDAETSQRLLGVAAEHALRPERLRLTPANDTESADAGEVRIPAVVVETIYLGTGNRVHLRTEDGLELVALEQSTGSLDDSGHRGEQVTVRFARADVVALTPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCU2</accession>
    <name>A0A0Q8VCU2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Saccharopine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14145</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897028.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53475">
        <property type="protein sequence ID" value="KRC53475"/>
        <property type="gene ID" value="ASE19_14145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1006830at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045982">
        <property type="entry name" value="DUF5938"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005097">
        <property type="entry name" value="Sacchrp_dh_NADP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19362">
        <property type="entry name" value="DUF5938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03435">
        <property type="entry name" value="Sacchrp_dh_NADP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sacchrp_dh_NADP" evidence="1">
        <location>
            <begin position="7"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5938" evidence="2">
        <location>
            <begin position="141"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="376" mass="40140" checksum="C122B9DB8788A732" modified="2016-01-20" version="1">MSTHKPVIVYGASGYTGRLICEYLREFGVPFVAAGRDEGKLKASMEANVPGIETADYEVVQVDHTVEALTELFSGASVVCNTVGPFSKYGVEVVEACLAAGTHYLDTTGEQDWLITCDEKYGADFAAAGLLLSPGIAQMYTTGEIAAELCLEKPGLDTLDIAVFWGGSPTIASTQTILVNAATSRAHFLQQNQYAEFDPTQGLVSLVVPGQHELALSLPWGGTSHPVWYRKDPRVANCKAQGGVFNAALMNGVPQIVAGALEATKDMSEDERDQALTATAAQVMNQMPPRENPRLNKSLDSVHASGPLGRAHCVIHGNQNYKQTGLLQAYAAYSLLQQPPLRVGFASGCKAFGHRELLGQLRAFGLVAEPVLTVEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCV7</accession>
    <name>A0A0Q8VCV7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14230</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897012.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53491">
        <property type="protein sequence ID" value="KRC53491"/>
        <property type="gene ID" value="ASE19_14230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1677662at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001646">
        <property type="entry name" value="5peptide_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00805">
        <property type="entry name" value="Pentapeptide"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13599">
        <property type="entry name" value="Pentapeptide_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="22901" checksum="FF4766B2BF212383" modified="2016-01-20" version="1">MADRPHAVPTPPTDSEVVGERWDDADLSGRTFTRVAFRDVDLTEVSAAGATFDACSFHDCDLNAARFSDTGFLNCTFTKASFFGARFEGCKLVGSTFDRCRFGAFEVVGGSWHLAGLPRADLRRTVFRRVDLREADLTGARLDDATLHHVDLSGAWLHQADLSGADLRGSDLSGLDPVATQLARAVVDLDQAIVLVRALGLKVEEEVPMTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCW7</accession>
    <name>A0A0Q8VCW7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Polyketide cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05965</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894086.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54988">
        <property type="protein sequence ID" value="KRC54988"/>
        <property type="gene ID" value="ASE19_05965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1719670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="16136" checksum="71D79820AD25BC33" modified="2016-01-20" version="1">MVRAYEFTDTWLVAAPVDAVAEVLVDLEQYPRWWPQVRAVAKLGPDTAWVRCRSTLPYTLDLVLDAVSRTPPVVEVALSGDLSGYARFTLTSEAGGTRLAFEQRVTVGGLLALASYVGRPVLSWNHARMMAGCRAGLGAATAAGQAAGTAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD20</accession>
    <name>A0A0Q8VD20_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Integrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04245</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55114">
        <property type="protein sequence ID" value="KRC55114"/>
        <property type="gene ID" value="ASE19_04245"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13333">
        <property type="entry name" value="rve_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="129"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="299" mass="33704" checksum="9700C1BD6055CAE7" modified="2016-01-20" version="1">MYPLVRELAADGIPAAVTCRVLKIARPPYYRWLTSPVTDADLVAAYRANVLFDAHRDDPEFGYRFLVDEAREAGESMAERTAWRICSELGWWSAFGKKRGTNGKKPGPPVHDDLCAVTDDKGRVRHVFSADAPNELWLSDITEHWTGEGKLYVCAIKDVYSNRIVGYSIDSRMKSRLAVAALNHAVARRGDVAGYVLHTDRGSQFRSRKFVHAINRHAMVGSMGRVGAAGDNAAMESFFSLLQKNVLDRRTWATRDELRIAIVRWIERTYHRRRRQAGLGRLTPIEYELIMAPTATQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDE6</accession>
    <name>A0A0Q8VDE6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09485</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894595.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52657">
        <property type="protein sequence ID" value="KRC52657"/>
        <property type="gene ID" value="ASE19_09485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1836217at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359925" evidence="2">
        <location>
            <begin position="26"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="221" mass="22900" checksum="94F10938BBA9A73F" modified="2016-01-20" version="1">MLRFVVPLALAAVLTACGTDDSPDAEDPTTAATSPVTTSTAADPTTDPTTDPTTDPATDPASGWTPPAAYPTPVTIRPGQVGKVRVGMSLAEGRATGQLEDGAALCGELVRWTGNPDGFLVLNDRSRRISQITVSVPGPRTERGGIQVGSTYGELRAAFPGLTKPVADGWDGASVYPPGEEDGRAYLGFLLLVPPAQVTDRTPVIAIAATGGDKPYFQYDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDN7</accession>
    <name>A0A0Q8VDN7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">N-acetylglucosamine 6-phosphate deacetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_06365</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the metallo-dependent hydrolases superfamily. NagA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895133.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55163">
        <property type="protein sequence ID" value="KRC55163"/>
        <property type="gene ID" value="ASE19_06365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1026967at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008448">
        <property type="term" value="F:N-acetylglucosamine-6-phosphate deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006044">
        <property type="term" value="P:N-acetylglucosamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003764">
        <property type="entry name" value="GlcNAc_6-P_deAcase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11113:SF14">
        <property type="entry name" value="PTHR11113:SF14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="3">
        <location>
            <begin position="40"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC55163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="299" mass="29849" checksum="A0F61C086E245DCA" modified="2016-01-20" version="1">MPRFGVTAFLPTVITSSPDARAEALAVLAAGPPTGWAGAVPMGWHFEGPMIAAARKGAHPVSWLCVPSPSLVEGWSRDAGVAMVTLAPELPEALGVVDQLVERGVVVAVGHTEATAAEVTAAVERGARAVTHLGNAMPALAGRMPGPVGAALSDERLTAGVIADGHHLHPATLAAYWRALGTDRFLAVTDCTAALGMPDGPARLGDQSVVVADGTVRLTDGTLAGSAADLAQCLRVLRAATGCSLASAAAGCTSVPAALLGDPARGHLGTGARGDLTLVDDDLSVVATVVGGQLLHGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDQ0</accession>
    <name>A0A0Q8VDQ0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Chaperone protein ClpB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">clpB</name>
        <name evidence="13" type="ORF">ASE19_10500</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homohexamer. The oligomerization is ATP-dependent.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homohexamer; The oligomerization is ATP-dependent.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the ClpA/ClpB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894765.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52832">
        <property type="protein sequence ID" value="KRC52832"/>
        <property type="gene ID" value="ASE19_10500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="44062at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009408">
        <property type="term" value="P:response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017730">
        <property type="entry name" value="Chaperonin_ClpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036628">
        <property type="entry name" value="Clp_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004176">
        <property type="entry name" value="Clp_R_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018368">
        <property type="entry name" value="ClpA/B_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028299">
        <property type="entry name" value="ClpA/B_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041546">
        <property type="entry name" value="ClpA/ClpB_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17871">
        <property type="entry name" value="AAA_lid_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02861">
        <property type="entry name" value="Clp_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81923">
        <property type="entry name" value="SSF81923"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03346">
        <property type="entry name" value="chaperone_ClpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51903">
        <property type="entry name" value="CLP_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00870">
        <property type="entry name" value="CLPAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00871">
        <property type="entry name" value="CLPAB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 10" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6 11" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 9" id="KW-0677">Repeat</keyword>
    <keyword evidence="5 11" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="Clp R" evidence="12">
        <location>
            <begin position="6"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="11">
        <location>
            <begin position="410"/>
            <end position="497"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00026057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU362034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC52832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="863" mass="93339" checksum="A0F0B684669813D4" modified="2016-01-20" version="1">MSNFGADKFTTRAREAIEAAQLSATTAGNTSVEPVHLLVALLLQEDGVAANLVAKAGVDVSGLVHAAAAARDALPRASGATVQQPAGSAALTRVLGSAMELAQSMKDEYIATEHLLIGLATVESSAQKVLTDAGLSADGLRESLTAVRGNRRVTSQDAESTYEALEKYSVDLTAAAEEGKLDPVIGRDQEIRRVIQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRVVAGDVPDSLKGKRVLSLDLMGMVAGAKYRGEFEERLKAVLDEIKQSEGQVITFIDELHTVVGAGAGGDSQMDAGNMLKPMLARGELHMIGATTLDEYRESIEKDPALERRFQQVFVGEPSVEDTIQILRGIQEKYEAHHGVRITDAALVAAATLSDRYITGRQLPDKAIDLVDEAASRLRMEIESSPEEIDQLRRQVDRLKMEEFALAKESDDASRERLEVLRADLADKEESLRGLEVRWEREKSELEGEGALRRQLDQLRSEAERLQREGDLGGASAILYGQIPALEQQIKAVEAAEDSVATGDKLVGEEVGSTQIAEVVEAWTGIPTGRLLQGETAKLLEMEQVIGARLIGQHEAVRAVSDAVRRARAGISDPNRPTGSFLFLGPTGVGKTELAKSLADFLFDDERAIVRIDMSEYAEKHSVARLVGAPPGYVGYDEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILILTSNLGSQFLVDPALSPEVQKESVLGVVRQSFKPEFLNRLDEIVTFDALTRDDLAHIVELLLRSLESRLAARRISLAVTPAARAWLADIGYDPAYGARPLRRLIQTAIGDPLARLLIAGEVTDGGSVTVDRGDDGLVLAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEQ0</accession>
    <name>A0A0Q8VEQ0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08950</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895601.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54169">
        <property type="protein sequence ID" value="KRC54169"/>
        <property type="gene ID" value="ASE19_08950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1074834at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="38"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="449" mass="47538" checksum="37821F659D77826F" modified="2016-01-20" version="1">MKSLHSSARIGVVILVVTLLVSFGLFSKDKISSLLMGGDTIEVHFDRAYKLRANVSEVKVAFVVVGKVTGVEPDGDDAVVRLKVDGDVLDRLGSEPTATIRPTTLLGGSYFVDLQPGGDPGAFTAASIPVERTTVPVELDKVARAVQPEARQGVRGTVRRLDAALDEDGERALRDLVATAPGALDPAAEVFDAAQGLHPNEDLAALTSGMENLGRVLSKEDGQLDGILVDLATTSRTLDRRSPEVAAAVRTLPAALQSTRTGLADLDGSLETLREVAADTRPLARQLDETLGVAQPVLRDARPLVADLRGLVRDARPMLDGLVPTAKGADSVLTDLRGDVLDRVDRKVMPWLHAKYTGKGPYSHTSSDKPTYEELAYMFATLDRASGMVDKNGHAVAFQPGIGSGSVGGIPISVEQMFKVLTESFYLKNPVDTVPPAGNLLSGLLGGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFK0</accession>
    <name>A0A0Q8VFK0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10150</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894703.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52770">
        <property type="protein sequence ID" value="KRC52770"/>
        <property type="gene ID" value="ASE19_10150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1977409at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025323">
        <property type="entry name" value="DUF4229"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14012">
        <property type="entry name" value="DUF4229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="86" mass="9854" checksum="84C0C7646B20BED9" modified="2016-01-20" version="1">MKEFWIYTALRVGLFVGAFCIVFGVWFLVADSVNVLIVLIIAFLVSGFASYVILERQRSALAVKVEERAGRITEKYEEMRSKEDED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFQ7</accession>
    <name>A0A0Q8VFQ7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">SURF1-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13395</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the SURF1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53341">
        <property type="protein sequence ID" value="KRC53341"/>
        <property type="gene ID" value="ASE19_13395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1908280at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd06662">
        <property type="entry name" value="SURF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002994">
        <property type="entry name" value="Surf1/Shy1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045214">
        <property type="entry name" value="Surf1/Surf4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23427">
        <property type="entry name" value="PTHR23427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02104">
        <property type="entry name" value="SURF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50895">
        <property type="entry name" value="SURF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="212"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="259" mass="27759" checksum="94961604C84C8389" modified="2016-01-20" version="1">MRLWGAHLLALVCVGFAAGMGVWQYDAWQERRAAEQVDLTEAAPVPITDVLGPDDPFPTAGLGRPVEVRGTFLDQGTVLVADRTGADGAEGRWLVTPLSVGAADQPAVPVVRGWVPADTPIDDVPAAPAGEVEVTGWLQPTESAEDLDTDPDDRVIPRLRVADLVQLLDDQDLYGAYVVARATLPSDADAGVVAADLDQLPAASRFTGLRNILYAIEWWVFAAFAVFVWWRHVREATAQPPFEEAADEDAEGGAVPSEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFQ8</accession>
    <name>A0A0Q8VFQ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_10410</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52818">
        <property type="protein sequence ID" value="KRC52818"/>
        <property type="gene ID" value="ASE19_10410"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002656">
        <property type="entry name" value="Acyl_transf_3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043968">
        <property type="entry name" value="SGNH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01757">
        <property type="entry name" value="Acyl_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19040">
        <property type="entry name" value="SGNH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="18"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="138"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="165"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="192"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="221"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="247"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="280"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="313"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="344"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl_transf_3" evidence="2">
        <location>
            <begin position="3"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="domain" description="SGNH" evidence="3">
        <location>
            <begin position="418"/>
            <end position="625"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="648" mass="70428" checksum="44C51BDDFEFCF0FB" modified="2016-01-20" version="1">MQGLRTVAALLVAIYHIWFHRVSGGVDVFFVVAGYFAAKSLLRMRTAASTRERVALVVAYWMRTLRRITPSAVVVITGTVVAGMLFLPESTWEYTLPHGFAALLHHENQQLIASGADYLQQDIAPSPFQQFWALSLQVQIYLTLPVVLLLATSLAAWLGRRGTHATTVALLVVLLASFAFSVWYTAVDQPAAYFSTFTRYWELVAGAVLFLVMRRGLADKVVANALGWVGLGVLVVLGATLDVSTLFPGWVALVPVTAAVLIMVSSASGAAPVVLSRGPLAWFGHASFAFYLWHWPILVTYRGWSGHDPGVRGGLAILVLSAVLAHVTTRFVETPVREWKRLQGSAVATLVVVALLVAPAYAALSYWQHVLDERQDAARARAERAAAGGDLSDLGADELVPAPSAARLDLVDVYDNGCHQVADRAEVIVCESGVPDGSRTIVVVGGSHSAQWIDVVRRAAVGLDARVLTMTKSGCLFADIDALGFELLPSCSEWAARALDKVLALEPDLVVTTASRQIGDHDEVLPAYRTYFEALDAAGIPVLGIRDNPRFPFDPPVCVETKGIDACARPRSRFYADDEPRGLAGLEQLEHFAYVDVADLLCPDDVCPVVQGHVLVYRDPHHMTRTWTLRKGGPVEQAVIDQLDRTDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH16</accession>
    <name>A0A0Q8VH16_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Branched-chain amino acid ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_02875</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AzlC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892796.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56778">
        <property type="protein sequence ID" value="KRC56778"/>
        <property type="gene ID" value="ASE19_02875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1866750at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011606">
        <property type="entry name" value="Brnchd-chn_aa_trnsp_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34979">
        <property type="entry name" value="PTHR34979"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03591">
        <property type="entry name" value="AzlC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="16"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="58"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="128"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="188"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010735"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="222" mass="22356" checksum="7F0D7D42A75D63C2" modified="2016-01-20" version="1">MSVVDVDRRTVVRDSLGVAIATGTYGLSFGAVGVASGLDVAQTCVLSLLMFTGASQFALAGVLGAGGSAVSGALTALLLGTRNTLYGLRMAPLLGYRGWQRAVAAHVLIDESTAMAVNRASRSLARTGFWTTGGTIFVLWNLTTLVGAVAGEQLGDPRDLGLDAAVGAAFLALLWPRLASPVARLTAVLAALVAASAVTVTPAGVPVLVAAGVAVLVGALRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH59</accession>
    <name>A0A0Q8VH59_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01935</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892637.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56619">
        <property type="protein sequence ID" value="KRC56619"/>
        <property type="gene ID" value="ASE19_01935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="337897at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360033" evidence="1">
        <location>
            <begin position="34"/>
            <end position="678"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="678" mass="71392" checksum="82E615FF3421E1CF" modified="2016-01-20" version="1">MTKVMQRRLSSVLGCAVVASLASVVSAPSSAPAAEVEDGLSVTTTALPPAPDALPIISLGLDGAWAYAGLRKNAREGTLYRTASDGSGSWQPVVDPVTELPLSFFDAIAPTVDNGTILAAQAPDENGCVTRLIAGPSSARTLAGCGGWSIAVGGQAVTRVEPNSGFPWRVEDLAGTLLDEGPGDYSSTQAPAVDHGELVRFTPEGHLVTRPVGSSASIADQLLPSACPAFDFLGVRDGYVLAPCPNSGRVSVLLRADGTAPPQPIAWQNWEVGKGFAVRPTWWSGDEPVGVEVIDLGAGRSTMRIPGVADAMPSPDRGNSAAFVMRTGAATAQVVAVTGLQPPAAEPDTAPPVIDELTGPGPALVPGVDDARVCWTGHDVGRPGALEYEVQKKSWPPGEAEPAWPDEPGERSLESCDWLYGTAGSTHCLRVRGADWAGNVSEWVTRCTFLDGGAPDLVWRPPYIGTIGRHPGPASRPVRLSWSASDDDPFATVAIDYRLAPNGAPAGPRVSPTAWRAIPISTTSVTRTFPAGSTVCFWIRAVDRAGRTATPSSLPVHQCTTIPLDDRAFSLRGAARRMTTASAYAGTATVLRTTRDEMVRPGVLAKIVQVRVLGVPLSTCPVVQVARIANRACRRYRDGDATVYWYQFYSPVRGALRVRLRTPVRGGVRVDAVYPTHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHG4</accession>
    <name>A0A0Q8VHG4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_02655</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892758.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56740">
        <property type="protein sequence ID" value="KRC56740"/>
        <property type="gene ID" value="ASE19_02655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1691158at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="152" mass="16458" checksum="D323BAE904B4D350" modified="2016-01-20" version="1">MAEQTSSSIVVDAPAADVMAVIADFAAYPAWAKGVTVADVRSSYDDADPKQAGRAREVFFTLDVSPIKDEYTLAYEWDGDAQVTWTLAEGKMLKALDGAYVLRATGPRTTEVTYRLALDVSIPLIGMLKRKGEKILIDTALKGLKKRVESGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHK7</accession>
    <name>A0A0Q8VHK7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04850</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894278.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54803">
        <property type="protein sequence ID" value="KRC54803"/>
        <property type="gene ID" value="ASE19_04850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2063007at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="20"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="102" mass="11233" checksum="DE114A0E205233D0" modified="2016-01-20" version="1">MAEDRDDTEPLWRDLLGRQLRRMRRERGETLTETAQRAGISPQYLSEIERGIKEPSSEMIAAVAGALGTSLLDLTSRVAEELYVVRPAPALRPVSTALALAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHR3</accession>
    <name>A0A0Q8VHR3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NAD_binding_9 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07770</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895396.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53965">
        <property type="protein sequence ID" value="KRC53965"/>
        <property type="gene ID" value="ASE19_07770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1239213at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038732">
        <property type="entry name" value="HpyO_NAD-binding"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13454">
        <property type="entry name" value="NAD_binding_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_9" evidence="1">
        <location>
            <begin position="20"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="470" mass="51013" checksum="29C369C86B167CAA" modified="2016-01-20" version="1">MTVTEDRAGREQVGERNRVAVIGGGASGVLTAINLLVRSDDPDLEVVIHEASGIVGRGIAYGTNDQRHLLNVRARHMSAFPDSPSDLLDWALRTGRSSDPQGFLPRADYAIYLQDRLADVADDRLRVRAGRVLDVVPNGDGFDIVTERSRSRACAVVLAHGNQPPRPLVAGPGQEPLAEAPWHVANPWQLARLRALPADASVIVVGTGLTAVDTVITLLEDGPERQVTMLSRNGLLPKPHVGQAHTAWVTRVPGGDGPVTADEIAEVVTEECKAAAERGVGWRAVVDGLRPATQELWRRLPHDERVRFLEVHARDWEIRRHRMAPDVALRLQRYRYEGRLHVRSGALASVTDLGERCRVRTTTDPASYDVDAVVNCTGPLSDVRRSEDPLIQALLARGTVRPDPLALGLDTTPDGRLVDAAGSPVPDLHLVGPPRKGTLWESTAIPEIRAQAAQVATAVAERTSRRSLAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI02</accession>
    <name>A0A0Q8VI02_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Superoxide dismutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03440</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892888.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56870">
        <property type="protein sequence ID" value="KRC56870"/>
        <property type="gene ID" value="ASE19_03440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1789560at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004784">
        <property type="term" value="F:superoxide dismutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.400">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036502">
        <property type="entry name" value="NiSOD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014123">
        <property type="entry name" value="Superoxide_dismutase_Ni-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09055">
        <property type="entry name" value="Sod_Ni"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109770">
        <property type="entry name" value="SSF109770"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02753">
        <property type="entry name" value="sodN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="136" mass="15256" checksum="C6CD353790301165" modified="2016-01-20" version="1">MFSRLTRKLVAPSIEVSAHCDLPCGVYDPAQARIEAESIKAVIAKVADSDDPDFRTRAVLIKEQRSELVKHHLWVLWTDYFKPPHFEKYPQLHTLVNEATKLAGAAGTKGTLDAAVADQLLAKIDEIAEIFWETKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI44</accession>
    <name>A0A0Q8VI44_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_03705</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892935.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56918">
        <property type="protein sequence ID" value="KRC56918"/>
        <property type="gene ID" value="ASE19_03705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1220708at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="3"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="271" mass="28898" checksum="7B721409BB663A69" modified="2016-01-20" version="1">MGIEFRGVSKTYPDGTVAVADFSCQVPSHRTLALVGTSGSGKTTLMRMVNRMIDPTTGEVLIDGKDVRGLDKVALRRSIGYVPQAGGLLPHRRVLDNVATVPVLTGTPKAEARTQAVALLEKVGLDPALGKRFPGQLSGGQQQRVAVARALAADPNILLMDEPFGAVDPIVRRDLQDQLLALQAELGKTIVLVTHDIDEAFKLGDQVVVLRTGGVIAQEGTPQQIMAAPADDFVRDFVGAGRAERSLRTVDLDGRRVVVDGDDRPVGVLEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI61</accession>
    <name>A0A0Q8VI61_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Polyisoprenoid-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14695</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896932.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53570">
        <property type="protein sequence ID" value="KRC53570"/>
        <property type="gene ID" value="ASE19_14695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1767227at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007372">
        <property type="entry name" value="Lipid/polyisoprenoid-bd_YceI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036761">
        <property type="entry name" value="TTHA0802/YceI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04264">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00867">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101874">
        <property type="entry name" value="SSF101874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YceI" evidence="1">
        <location>
            <begin position="13"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="19967" checksum="69014A7C8686E3F6" modified="2016-01-20" version="1">MSDTTALTDISGDYTLDVAHSRLGFVARHAVVTKVRGQFTDWNATAHIDTANPADSSVTVTINAASVSTGTPDRDGHLTSPDFFDVAQFPEWKFVSTEVSRDGDEWTITGDLTIKDVTKPVTIEFEENGSAKDPFGNIRVGFEGDVTVNRKDWGLTWNAALETGGVLVSEKIKLEFDISAIKNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIA9</accession>
    <name>A0A0Q8VIA9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl--CoA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08710</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895557.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54125">
        <property type="protein sequence ID" value="KRC54125"/>
        <property type="gene ID" value="ASE19_08710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1015470at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="31"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="484"/>
            <end position="564"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="584" mass="62236" checksum="D96C1C7A4CBA69A7" modified="2016-01-20" version="1">MSTIAERRDALLERFSTWIPRTLDAWLDLCADRHPERDLVVTDERVLTYAEVAEESRRLADGLAALGVQRGDRVGLLMANHAEFVTLKFAIARAGAVAIPFNFLYRTDELRYVLAQSDCKVLITNQGFQALDHAAMLDEIVPGWDTPGFADRAPSGDGAPDGLRHVVLVGRDGDAPRPGAFTGAALADLGNRHPGAAAGAGHTPDDVSDLLYTSGSTGSPKGVQVTHDAVLRTAYASALTRAYEDGRRILFSLPCYHMFGYVEGLLSATYVGGAVIMLPSFSAEAYLTAIEKHRATDMLCVPTMAVALVESPLRQETDLSSLTAILCGSAPAPVWLWEQVEQDFGVSEIVTGYGMTECGGAMTLTLPEDDLVLTSTTVGRPKLAGAAGVEGHGTLCVYRTVDPVSGEVLPEGAVGELTSSGPTTMLGYFAKPEETAAALHLDADGTVWLHSGDLGRVREDGYLVLTGRSKEVYKSGGELVMPKEVEEVLGAHPGISQVYAVGVVDERWGEIGCAVVVRAPGSEGDALTADDVIAHAKEHLARFKVPKRVEFLDAAQLPATATGKVQKFRLVELLTQPSQQGEPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIN0</accession>
    <name>A0A0Q8VIN0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23825</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894047.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57413">
        <property type="protein sequence ID" value="KRC57413"/>
        <property type="gene ID" value="ASE19_23825"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="2"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="301" mass="33432" checksum="B020E45411385E4F" modified="2016-01-20" version="1">MLDVRRLRLLHELSRRGTLAEVAEALHQSPSSVSQALTQLEREVGVPLLEKAGRRVRLTPAAEILVDHTAVILQRLELAASEVATQDHRASGTVRVAVFQSAASAFMPQMLTELAARHPRLRVTMSQREPEQALYETWMREFDLVVAEEYPGHAARLYPDLDREPLTTDLLRLAVPPSGDPWSSVRSVADAADLPWTMEPAGTASRHWAEQLCRQAGFEPDVRFETDDLEAQIALIESGNAVAILPDLMRVRRRPDVRVVDVDPRRRSVFTATRSAIAGTPAIRACREALASVVPEHLSVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ82</accession>
    <name>A0A0Q8VJ82_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">GDP-mannose 4,6-dehydratase</fullName>
            <ecNumber evidence="3">4.2.1.47</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_07430</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NAD(P)-dependent epimerase/dehydratase family. GDP-mannose 4,6-dehydratase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.47" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53906">
        <property type="protein sequence ID" value="KRC53906"/>
        <property type="gene ID" value="ASE19_07430"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008446">
        <property type="term" value="F:GDP-mannose 4,6-dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019673">
        <property type="term" value="P:GDP-mannose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006368">
        <property type="entry name" value="GDP_Man_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43715">
        <property type="entry name" value="PTHR43715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="4">
        <location>
            <begin position="2"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="314" mass="33144" checksum="EFF17B46E463A9F9" modified="2016-01-20" version="1">MTGAAGQDGIYLARSLVADGHRVVGTVTPGFGAGDARATYLGGVDLRELDLRDAAGLAALVADVEPDEVYNLAAVSSVGRSWQEPELTVAVNQTAVEVLVDAARRLRDRTRRDVRLFQASSAEVSGEATASPYARSKAAAEDVVRAARDAGLAACFGRLYIHESPLRAQTFVSRKITRGAAEIALGKSDRLVLGNLDVVRDWGFAGDYVEAVRLMLAADVPVDLPIGTGRPHGLRDLVERAFVAAGLDGADGYVEQDPALVRPADTAFLVADPEPAAAALGWRASVSFEETIDAMVAADLERLRTGAEESLAYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKG5</accession>
    <name>A0A0Q8VKG5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cytokinin riboside 5'-monophosphate phosphoribohydrolase</fullName>
            <ecNumber evidence="1">3.2.2.n1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04725</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>9-ribosyl-trans-zeatin 5'-phosphate + H2O = D-ribose 5-phosphate + trans-zeatin</text>
            <dbReference type="Rhea" id="RHEA:48564"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16522"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
            <dbReference type="ChEBI" id="CHEBI:87947"/>
            <dbReference type="EC" id="3.2.2.n1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + N(6)-(dimethylallyl)adenosine 5'-phosphate = D-ribose 5-phosphate + N(6)-dimethylallyladenine</text>
            <dbReference type="Rhea" id="RHEA:48560"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17660"/>
            <dbReference type="ChEBI" id="CHEBI:57526"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
            <dbReference type="EC" id="3.2.2.n1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the LOG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.n1" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894300.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54781">
        <property type="protein sequence ID" value="KRC54781"/>
        <property type="gene ID" value="ASE19_04725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="902542at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102682">
        <property type="term" value="F:N6-(Delta2-isopentenyl)-adenosine 5'-monophosphate phosphoribohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009691">
        <property type="term" value="P:cytokinin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005269">
        <property type="entry name" value="LOG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031100">
        <property type="entry name" value="LOG_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03641">
        <property type="entry name" value="Lysine_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00730">
        <property type="entry name" value="TIGR00730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0203">Cytokinin biosynthesis</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="242" mass="26208" checksum="B783F35B6605576C" modified="2016-01-20" version="1">MTRRSSPGPRPSKGRPEGSTTDQRLLDSRGDGGWVHTDTWRVLKIQAEFVEGFNDLAEVGPAISVFGSARIPATHPAYDIGVRVGAALAGAGFAVITGGGPGAMEAANKGAMEAGGESIGLGIELPWEAKLNDYVGFGLNFRYFFVRKMMFVKYSQGYVVLPGGLGTLDELFEAMTLAQTLKITQFPIVLMGVEHWQGLIDWMQGSMLEDARIKQTDLDMLTLTDDVDEAVALMVAARERHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL12</accession>
    <name>A0A0Q8VL12_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">GSDH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_05680</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894138.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54941">
        <property type="protein sequence ID" value="KRC54941"/>
        <property type="gene ID" value="ASE19_05680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="567019at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012938">
        <property type="entry name" value="Glc/Sorbosone_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011041">
        <property type="entry name" value="Quinoprot_gluc/sorb_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07995">
        <property type="entry name" value="GSDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50952">
        <property type="entry name" value="SSF50952"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360137" description="GSDH domain-containing protein" evidence="2">
        <location>
            <begin position="22"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="domain" description="GSDH" evidence="3">
        <location>
            <begin position="66"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="366"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="376"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="390" mass="41132" checksum="53C738450A16F378" modified="2016-01-20" version="1">MRRLAPAAALLALGLVVTACSQGGNVTDIDVSGTASAAPTGTVQDGKLTFAVDGVPDVVATIATGLATPWGIDFLPDGRAIVTERDSARVLLVTSPDVSDGPTKEQGEVVEIGQIPETDPRGEAGLLGVAVSPTFAADGLVYFYVCTSQDNRVVRARFDGKLLEPSEPILTGIPTGTIHDGGRLAFGPDGFLYVSTGEGGNDALAQKKKSLAGKILRITSEGKPAPDNPFKTVVWSWGHRNVQGLAFDTDGSLWASEFGNKKSDELNRILPGENYGWPRVEGTGGPKRFTQPQLTWKPAEASPSGLTYAGGYLWMAALRGERLWRIKVAGGQASDPAAYFEGEKAGDAGEYGRLRTVARAPDGRLWLTTSNEDGRGNAGPDDDRILLVEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLB5</accession>
    <name>A0A0Q8VLB5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutamyl-tRNA amidotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06150</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894431.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55021">
        <property type="protein sequence ID" value="KRC55021"/>
        <property type="gene ID" value="ASE19_06150"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020556">
        <property type="entry name" value="Amidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00571">
        <property type="entry name" value="AMIDASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Amidase" evidence="1">
        <location>
            <begin position="21"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="383" mass="39116" checksum="2CDF9F84AE8656BE" modified="2016-01-20" version="1">MSPWDERVWQLRGDPLLNGAGVGPLVGETLAVKDLYAVAGLSTGAGNPARLAAAAPADTDAEVVAALLDAGADLRGITQTEEFAYSLSGTNAHYGAPPNPAAPGRVSGGSSSGSATAVSLGEATIGLGTDTAGSIRVPASYQGLFGIRTTHGAVSREGVLPLAPSFDTVGWMTRDAGLLARVGGVLVPGTATDADRRFVTVPGLLELAHVDVAAAVAAWQPGLAVPVTWPVEDLDPWRDAFTTVQAWEAWQAHGAWLGSRMDTLGADVRARFERASRVTADEADAARTVLAGARDALDELVGDRIVVLPATPTVAPELGPGLSERLQSVREATLTLTCLAAIGGLPAVTVPLRTAAGLPCGASLLAGRGRDHDLLQIAATLTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VML6</accession>
    <name>A0A0Q8VML6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02740</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892774.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56755">
        <property type="protein sequence ID" value="KRC56755"/>
        <property type="gene ID" value="ASE19_02740"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="14"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="114" mass="12618" checksum="6B9B82FE4A1B8E62" modified="2016-01-20" version="1">MLTSGLVSSWRDRLVAGIVVALFLVPAVILLAGPKPSRFGFQMYSGYGMVSASWEDRSGGRHEVELTDHVANDRAEVDWTETLPEQLCPRFPDAVEVQVRRTQPGTDQVRTVSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNW7</accession>
    <name>A0A0Q8VNW7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Acetylornithine aminotransferase</fullName>
            <shortName evidence="2">ACOAT</shortName>
            <ecNumber evidence="2">2.6.1.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">argD</name>
        <name evidence="4" type="ORF">ASE19_23310</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2-oxoglutarate + N(2)-acetyl-L-ornithine = L-glutamate + N-acetyl-L-glutamate 5-semialdehyde</text>
            <dbReference type="Rhea" id="RHEA:18049"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29123"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
            <dbReference type="EC" id="2.6.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
        <text evidence="2">Binds 1 pyridoxal phosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 4/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="2">May also have succinyldiaminopimelate aminotransferase activity, thus carrying out the corresponding step in lysine biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.11" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892505.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58982">
        <property type="protein sequence ID" value="KRC58982"/>
        <property type="gene ID" value="ASE19_23310"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00109"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003992">
        <property type="term" value="F:N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01107">
        <property type="entry name" value="ArgD_aminotrans_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004636">
        <property type="entry name" value="AcOrn/SuccOrn_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00707">
        <property type="entry name" value="argD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="2" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="2">
        <location>
            <begin position="108"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="2">
        <location>
            <begin position="219"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>N(2)-acetyl-L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="281"/>
        </location>
        <ligand>
            <name>N(2)-acetyl-L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="282"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC58982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="398" mass="41293" checksum="325C86924926EA14" modified="2016-01-20" version="1">MSATNAEWTERYAGSLMNTFGPPKLVLTRGQGAHVWDADGREYVDLLGGIAVNALGHAHPRLVEAVTTQLQTLGHVSNFFASEPQIALAERLVGLLGTEARVFFTNSGAEANEAAFKLTRRTGRTRIVATAGSFHGRTMGALALTSKQAYREPFEPLPGDVTFVEYGDIAALDAAVDDTTAAVLVEPVQGEAGVIVPPRDYLPAAQRIAHEHGALLWLDEIQTGIGRTGAWYAHQNPALVSEPVVPDIVTLAKGLAGGIPIGACLATHGAGKLFDPGNHGTTFGGNPVAAAAALAVLDVIAEDGFLARVTEAGERLKAAAAADARVVETRGAGLLVGLTLAEPKSAEVVSAAQDAGFIVNGATPERVRMAPPLVLTDADIDAFAAAWSSILDHAGVQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPT4</accession>
    <name>A0A0Q8VPT4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00250</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896831.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59509">
        <property type="protein sequence ID" value="KRC59509"/>
        <property type="gene ID" value="ASE19_00250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2227617at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="165"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="196"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="235" mass="23884" checksum="6FBAA6640C962BC4" modified="2016-01-20" version="1">MDKAPGAAAVIAGAMLGAAPLIELVGTARGDTDNATDGLRFLDDSAYRYGLAGFALVVGGLALIVAALGFAQAVGRRTELGLGLLTVTTLAVVAGASYLFAGIIRHTSHGTIGYIEGMDRGWAESAYLSTHMIGTQALLPMASHLLAAWLVGVAVLLFRVGRRRLAVVGVLPALLLALFVVDALVPLAEESAAGGVLWACYVLTMLVAQPLTLVVVGLVAVGAVSDPLASTPPTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPY5</accession>
    <name>A0A0Q8VPY5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="14 15">Dihydroxy-acid dehydratase</fullName>
            <shortName evidence="15">DAD</shortName>
            <ecNumber evidence="14 15">4.2.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="primary">ilvD</name>
        <name evidence="16" type="ORF">ASE19_05640</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <reference evidence="16 17" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Functions in the biosynthesis of branched-chain amino acids. Catalyzes the dehydration of (2R,3R)-2,3-dihydroxy-3-methylpentanoate (2,3-dihydroxy-3-methylvalerate) into 2-oxo-3-methylpentanoate (2-oxo-3-methylvalerate) and of (2R)-2,3-dihydroxy-3-methylbutanoate (2,3-dihydroxyisovalerate) into 2-oxo-3-methylbutanoate (2-oxoisovalerate), the penultimate precursor to L-isoleucine and L-valine, respectively.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>(2R)-2,3-dihydroxy-3-methylbutanoate = 3-methyl-2-oxobutanoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:24809"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:49072"/>
            <dbReference type="EC" id="4.2.1.9"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="11">
            <dbReference type="Rhea" id="RHEA:24810"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>(2R,3R)-2,3-dihydroxy-3-methylpentanoate = (S)-3-methyl-2-oxopentanoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:27694"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:35146"/>
            <dbReference type="ChEBI" id="CHEBI:49258"/>
            <dbReference type="EC" id="4.2.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="15">Binds 1 [2Fe-2S] cluster per subunit. This cluster acts as a Lewis acid cofactor.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 15">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="13 15">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 3/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="12 15">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 15">Belongs to the IlvD/Edd family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.9" evidence="14 15"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894146.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54935">
        <property type="protein sequence ID" value="KRC54935"/>
        <property type="gene ID" value="ASE19_05640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="193579at2"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00057"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00061"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004160">
        <property type="term" value="F:dihydroxy-acid dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00012">
        <property type="entry name" value="IlvD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042096">
        <property type="entry name" value="Dihydro-acid_dehy_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004404">
        <property type="entry name" value="DihydroxyA_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000581">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020558">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037237">
        <property type="entry name" value="IlvD/EDD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00920">
        <property type="entry name" value="ILVD_EDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143975">
        <property type="entry name" value="SSF143975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00110">
        <property type="entry name" value="ilvD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00886">
        <property type="entry name" value="ILVD_EDD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 15" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3 15" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10 15" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="7 15" id="KW-0408">Iron</keyword>
    <keyword evidence="8 15" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9 15 16" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="15">
        <location>
            <position position="476"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="15">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="450"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="15">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00029436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00029490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KRC54935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="560" mass="58446" checksum="E0793ABD19F9E2B7" modified="2016-01-20" version="1">MSDAPDIKPRSRDVTDGLEKAAARGMLRAVGMGDEDFAKPQIGVASSWNEITPCNLSLDRLAKAVKNGVHAGGGYPLEFGTISVSDGISMGHEGMHFSLVSREVIADSVEVVMNAERLDGSVLLAGCDKSLPGMLMAAARLDLASVFLYAGSIMPGQVDGRDVTIIDAFEAVGACLAGKITREEVDRIERAICPGEGACGGMYTANTMASVGEALGMSLPGSAAPPAVDRRRDGFAHRSGEAVVNLLRKGITARQIMTREAFENAIAVVMALGGSTNAVLHLLAIANEAEVELSLDDFNRIGDKVPHLADMKPFGRYVMNDIDKIGGIPMVMRALLDAGLMHGDCLTVTGRTMAENLDELAPPAVDGTVIRPLDAPIHKSGGLTILKGSLAPEGAVVKSAGFDDSVYTGTARVFDGERAAMDALEEGRIVSGDVVVIRYEGPKGGPGMREMLAITGAIKGAGLGKDVVLVTDGRFSGGTTGLCVGHIAPEAVDGGPIAFVRDGDRITLDVANRTLELAVDEAELEARKVGWEPLPPKYTRGVLGKYARTVQSAALGAVTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQR9</accession>
    <name>A0A0Q8VQR9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AsnC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02730</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892772.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56753">
        <property type="protein sequence ID" value="KRC56753"/>
        <property type="gene ID" value="ASE19_02730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1855714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AsnC_trans_reg" evidence="1">
        <location>
            <begin position="8"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="92" mass="9910" checksum="3D7FAE7FF115D2E2" modified="2016-01-20" version="1">MITAIVFVQAETARIPEVAAAIAALDGVSEVYSVTGQIDLIALVRVKNHEDIATVVSDRLNKVDGVVDTETHIAYRAYSRHDLEAAFSLGLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQS7</accession>
    <name>A0A0Q8VQS7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_01300</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896884.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59820">
        <property type="protein sequence ID" value="KRC59820"/>
        <property type="gene ID" value="ASE19_01300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="429006at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000727">
        <property type="entry name" value="T_SNARE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50192">
        <property type="entry name" value="T_SNARE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0807">Transducer</keyword>
    <feature type="domain" description="HAMP" evidence="6">
        <location>
            <begin position="412"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="4">
        <location>
            <begin position="469"/>
            <end position="698"/>
        </location>
    </feature>
    <feature type="domain" description="T-SNARE coiled-coil homology" evidence="5">
        <location>
            <begin position="628"/>
            <end position="690"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="727" mass="77115" checksum="43F29BD45063B085" modified="2016-01-20" version="1">MMENSPTNMMFADREFVIRYMNPASLETLRKLEEHLPIKADDIVGASLDVFHKKPSYQRGILADATNLPRRANIQVGPEVLDLLVSPIRDAAGEYVGAMATWEVITEKVRMEEEVARVTSMMENSPTNMMFADRDFVIRYMNPASLNTLRSLEKVLPVTADQVIGSSLDIFHKNPAYQRGILESAEHLPRRADIKVGDETLDLLVSAITDGKGEYIGAMATWEVVTDRLRAERERAESEADTTAVNKLLSTLSSATDVDRAVQSALDTVRGEFGWAYGSYWKIDPADRTLKFERESGDAGAEFRRVTLQASFAEGVGLSGRAWAQRDLFFTPDIGEMTDCVRAPVAQQVGVKSGVCFPLIVEGEVIGTMDFFATETLQPTPQRLEALRNVGRLVSQAIARIDRETAEREAAAVLATKVAQILDVVSAAAAGDLTRELDIDGDDAVGQVADGLRTLLSTLRGSMGDIGGTAESLAAAADQLTSLAEGMGEGATMTSDRAASASSASVQVSASIQTVATAAEEMTASIREIAKNATEAATVATDAVTVASEAQGTVASLGESSAEIGQVIKVITSIAQQTNLLALNATIEAARAGDAGKGFAVVANEVKELAKETAKATEEIGQKIEAIQSDTQGAVSAISRIADVIAKINDIQSTIASAVEEQTATTNEIARSVTEAAAGANGIAEDVTQVATAAADTREGAQNTLTSATELTGMAGQLRDLVGRFAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQX5</accession>
    <name>A0A0Q8VQX5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">3'(2'),5'-bisphosphate nucleotidase CysQ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00860</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896735.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59606">
        <property type="protein sequence ID" value="KRC59606"/>
        <property type="gene ID" value="ASE19_00860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1741160at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046855">
        <property type="term" value="P:inositol phosphate dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020583">
        <property type="entry name" value="Inositol_monoP_metal-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000760">
        <property type="entry name" value="Inositol_monophosphatase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00459">
        <property type="entry name" value="Inositol_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00377">
        <property type="entry name" value="IMPHPHTASES"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00629">
        <property type="entry name" value="IMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="263" mass="28165" checksum="E064CDC523901158" modified="2016-01-20" version="1">MTFEPGTPAPDVVADDHLFAAWLAEAAGRRLLEVRAEGLEGKELKDAGDRAAHVLLTELLATYRPDDAVLSEEALENAADKDARLSAAKVWIVDPLDGTREFSEPPRDDWAVHVALWQDGDLVAGAVAQPELGETFNTGRPPVVPARTSERPRIAVSRTRPPAFVEALAKELDAELVPMGSAGVKMMSVVRDVADAYVHAGGQYEWDSAAPVAVARAAGLFTSRVDGSALVYNQADVYLPDVIVCRPELSEQILAFIAANGTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR82</accession>
    <name>A0A0Q8VR82_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03845</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892962.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56945">
        <property type="protein sequence ID" value="KRC56945"/>
        <property type="gene ID" value="ASE19_03845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1694750at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="28"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="23442" checksum="D3FEC10D8C39A780" modified="2016-01-20" version="1">MADLHLPEPGTAPAFTDVWLPDDLRAVVLVLHGGAERTDRPVDGRSLSWRRARALGRTLARRVGADGIGVAVLRYRVKGWNAGAGALPSPVPDARWALDELAQEHDVPVVIVGHSMGARTAVAVADHPAVQGVVALAPWLPADEPVDPLTGKRLRAAHGRRDRITSARATRRFVERAATVADADFTDMGMVGHYLLTQVPLWNAFTVASVRELVLTDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRG4</accession>
    <name>A0A0Q8VRG4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01825</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896557.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59782">
        <property type="protein sequence ID" value="KRC59782"/>
        <property type="gene ID" value="ASE19_01825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13401">
        <property type="entry name" value="AAA_22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="708"/>
            <end position="773"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="778" mass="83908" checksum="F260244E92532CB8" modified="2016-01-20" version="1">MVVGRAAETNPLVGRRRELDTIKRLLEGHRLVTLTGVGGAGKTRLARRVTADLSRVYKDAAWIVELADVTDPDLLGHSVARAIGLQVKSADFDPALITEFLADRRALLTIDNCEHLVDACADLVEDILDSCPGVRVLTTSQRALGLRAESLFQVPPLTMPTAGVDVPVEGLGQYESISLFVERAAAIEPGFAVTAGNAPAIVELVRALEGIPLALELAAARTRVLSPQAMVERLEDRYRLLNRGFRGKVPDRQRSLEASVNWTHDLCTEDERRLWAELSVFRGGFGFEAAEAVAGAGLGDAFLDVLDSLVERSVVRRENLGDGARFRMLETLRLYGERELARAGTTSDVRRRHREHFLGRARHFGATWTGPDQVALLGEMHADHANIRAALHDAIETGDTADALSLIASLEQFWITGGFVSEARRWLDQALAGAESAERGPTLSTGLRVAAWFALMQVDFVSAEAIMQGLRLLAEEPAAADDPVTPAEITLAEGVQAGWTGDTARGVDLIESAVERFAEVDDLSTRCFGLVIGGMLAGFTGETERARAALLQAVALTEERSELYMRSNGLAILGVLKLADGDGDAATATLRDALGMKRILGDQLGTALTLEFLAWVAIAEGRGERAATLMGAATSIWNTLGILLNALPHFAERREQCEQATRSVLSPEEYERAMAAGTAMDPAAAIAYGLEETAAAPAPAAATRARRTEPVKSPLTRREREVALLVQEGLSNQQIAERLVLSTRTAEAHVENILRKLGFTSRTAIASWVAEHQDEVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRJ3</accession>
    <name>A0A0Q8VRJ3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">ADP-dependent (S)-NAD(P)H-hydrate dehydratase</fullName>
            <ecNumber evidence="9">4.2.1.136</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">ADP-dependent NAD(P)HX dehydratase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">nnrD</name>
        <name evidence="12" type="ORF">ASE19_00355</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 10">Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.</text>
    </comment>
    <comment type="function">
        <text evidence="9">Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>(6R)-NADHX = (6S)-NADHX</text>
            <dbReference type="Rhea" id="RHEA:32215"/>
            <dbReference type="ChEBI" id="CHEBI:64074"/>
            <dbReference type="ChEBI" id="CHEBI:64075"/>
            <dbReference type="EC" id="5.1.99.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 10">
            <text>(6R)-NADPHX = (6S)-NADPHX</text>
            <dbReference type="Rhea" id="RHEA:32227"/>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
            <dbReference type="ChEBI" id="CHEBI:64077"/>
            <dbReference type="EC" id="5.1.99.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 9 10">
            <text>(6S)-NADHX + ADP = AMP + H(+) + NADH + phosphate</text>
            <dbReference type="Rhea" id="RHEA:32223"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:64074"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="4.2.1.136"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4 9 10">
            <text>(6S)-NADPHX + ADP = AMP + H(+) + NADPH + phosphate</text>
            <dbReference type="Rhea" id="RHEA:32235"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="4.2.1.136"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
        <text evidence="10">Binds 1 potassium ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the NnrD/CARKD family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 10">In the C-terminal section; belongs to the NnrD/CARKD family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 10">In the N-terminal section; belongs to the NnrE/AIBP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.136" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59798">
        <property type="protein sequence ID" value="KRC59798"/>
        <property type="gene ID" value="ASE19_00355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1748633at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052855">
        <property type="term" value="F:ADP-dependent NAD(P)H-hydrate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052856">
        <property type="term" value="F:NADHX epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052857">
        <property type="term" value="F:NADPHX epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046496">
        <property type="term" value="P:nicotinamide nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01171">
        <property type="entry name" value="YXKO-related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01965">
        <property type="entry name" value="NADHX_dehydratase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000631">
        <property type="entry name" value="CARKD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030677">
        <property type="entry name" value="Nnr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004443">
        <property type="entry name" value="YjeF_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036652">
        <property type="entry name" value="YjeF_N_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01256">
        <property type="entry name" value="Carb_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03853">
        <property type="entry name" value="YjeF_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017184">
        <property type="entry name" value="Nnr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64153">
        <property type="entry name" value="SSF64153"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51383">
        <property type="entry name" value="YJEF_C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51385">
        <property type="entry name" value="YJEF_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 10" id="KW-0413">Isomerase</keyword>
    <keyword evidence="12" id="KW-0418">Kinase</keyword>
    <keyword evidence="9 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 10" id="KW-0520">NAD</keyword>
    <keyword evidence="9 10" id="KW-0521">NADP</keyword>
    <keyword evidence="9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-0630">Potassium</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="YjeF N-terminal" evidence="11">
        <location>
            <begin position="1"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="227"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="276"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="318"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="355"/>
            <end position="359"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="384"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="385"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00006001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00009524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR017184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC59798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="444" mass="43958" checksum="14E618977594A84B" modified="2016-01-20" version="1">MATLPQGALMQRAAAGLAYAVLDLLDGGYGRRVLLLVGSGDNGGDALYAGAMLARRGALVEAWLLSATVHEAGLAALRAAGGRTGTPGPRDVDVVVDGIVGIGGRPGLRPAAVDALAAVAGVPLVAVDTPSGVDVDTGAVDGPHVTADVTVTFGTHKACHLLDPAALACGSVDLVDIGLDPYLPPAAIEALQSADVAALLPRPAPEAHKYTRGVVGIRAGSATYPGAGLLSVAGAACGLAGMVRYDGDAAVLDLVRAQHPEVVGPGRVQAWVVGSGSDAAAEAALRDAVADGVPVVVDADALAFADLAHGRPAVLTPHAGELSRMLDLDREVIEAQPLAHARTAAARYDAVVLLKGRHTVVAHPDGRVRVTTTGTPWLATAGAGDVLGGVVGALLAGGLEPFDAASVGSWVHGAAATLAAQHGPIVAGDVAAAVPALLATLTTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VS91</accession>
    <name>A0A0Q8VS91_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23850</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57361">
        <property type="protein sequence ID" value="KRC57361"/>
        <property type="gene ID" value="ASE19_23850"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042578">
        <property type="term" value="F:phosphoric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044003">
        <property type="term" value="P:modulation by symbiont of host process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007312">
        <property type="entry name" value="Phosphoesterase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31956">
        <property type="entry name" value="PTHR31956"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04185">
        <property type="entry name" value="Phosphoesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0843">Virulence</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="251" mass="27679" checksum="97E175C28519E563" modified="2016-01-20" version="1">MVIEENHSRDQMLAQMPHLARLAHRYGMATRWSALVHPSEPNYLAIVGGSMFSVTDDRSPSRNAPKVGPADNVFARAIRAGRTARTYAESMPSPCALENHGDYAVRHNPWTYFPADRRNCARFDVSTQHFADDARSNRLPDVGLLVPNLVHDAHDGSLAAADEWLAASLAPVLASTDFRTGRLVVVVTADEDDRHAGNTVLTAVLTPWLRHKVVDRRLDHYSLHRFMAELVGVDPLANGVGARDMRGAFGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSP2</accession>
    <name>A0A0Q8VSP2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_24120</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57408">
        <property type="protein sequence ID" value="KRC57408"/>
        <property type="gene ID" value="ASE19_24120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="12"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="124"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="232"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC57408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="384" mass="42592" checksum="FA5E9382B4151B9E" modified="2016-01-20" version="1">MPRRSPWMNTDLDDFRDLARTFCEKEIKPNVDRFIENKQVDRDLWNKAGEVGLLCLSVPEEYGGGGGSFAHEAILIEEQARVGDSSWGASLHNGIVAHYILNYGTEEQKLEWLPRMASGEVVGAIAMTEPGTGSDLQSIKAKAIREGDEYVVNGSKIFITNGAQADMVITVVKTNPEEAAAGISLVIVPTDTPGFARGKVLDKIGMKGQDTSELFFEDVRIPVTNLLGSEEGQGFIQLMEQLPQERLIVAVSNVAAMELCFEETLRYVHERQAFGRPIWGFQNTKFKVAEIATESRVARSFVDECIELHLEKQLDIPTVAMAKLWCSERAQKVADMCLQLHGGYGYMNEYPIARAWADLRVSQIYAGTSEIMKEIISRSLPAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUH4</accession>
    <name>A0A0Q8VUH4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_02860</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892793.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56775">
        <property type="protein sequence ID" value="KRC56775"/>
        <property type="gene ID" value="ASE19_02860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1629363at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="219" mass="23586" checksum="81AC4E47456F6464" modified="2016-01-20" version="1">MKLVAALRTPGAGLLEPAFRTRLAELGATRVQVNLDDDAVAPAMRFGPGTPITAVVSVWGELDVAGVLGVVREADGDVDAWLVDEREPLVPPVVPDGVRADALANLAFLRRPEAMSHADWLSDWLDRHTQVAIDTQGTFGYVQNPVLEALTPGGRDVTGIVEELFPMAAMSDQHAFYGSGGDDAELNRRFSELMDSCARFGAADGLDLVPTSRFLFRLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWU5</accession>
    <name>A0A0Q8VWU5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Multidrug ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_23455</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893925.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57719">
        <property type="protein sequence ID" value="KRC57719"/>
        <property type="gene ID" value="ASE19_23455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1926714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="10"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="42"/>
            <end position="49"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC57719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="302" mass="31947" checksum="A20925117020EB82" modified="2016-01-20" version="1">MTTRPNPPAVRLSGVTKAFGAVEAVRGIDLELNPGEIVAFLGPNGAGKTTTIDLVLGLSRPTTGTVEVLGMEPRRAIARGLVAAVMQTGGLLKDLTVRETVAYTASLFADTRPVDEVLERAGIAGIADRRVGKCSGGEQQRLRFAMALLSDPALLLLDEPTTGMDVEGRRAFWSAIRADLATGRTVLFATHYLEEADQYADRIVLVRKGKVVADGTGPEIRALASGRTLRAHLPGADRPTLERIGALGGVDSVETRGDTLIVQAKDSDAVARHLLTETDARDLEITAQGLEEAFLSLTGDAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZP7</accession>
    <name>A0A0Q8VZP7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01730</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896878.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59826">
        <property type="protein sequence ID" value="KRC59826"/>
        <property type="gene ID" value="ASE19_01730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="122"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="222"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="257"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="30593" checksum="E44731A5F4DD5BDA" modified="2016-01-20" version="1">MSEDRAALAAQIRQQQLASIKKVVTLPSRTLLHSGEQFRFYLAALQGIPFALTRYRREVLRLISTVAFGSGAIALIGGTVVVVSFLTAFAGIELGLQGYSQLSNIGVEALSGFISAYINTRLAAPALAGIALTATVGAGFTAQLGAMRVSEEIDALEVMSIRSIPYLVSTRIVAGLISIIPLYAVSLLASFAATRLVVTLGFGQSSGAYQHYFNTFLIPGDIVLSFVKVMCMAVVIMAVCCYYGYTAKGGPAGVGQAVGSAVRLSLIAILFADMLLSFALYGTSHSLNITG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W279</accession>
    <name>A0A0Q8W279_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_00425</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59799">
        <property type="protein sequence ID" value="KRC59799"/>
        <property type="gene ID" value="ASE19_00425"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="9"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="42"/>
            <end position="49"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="254" mass="27313" checksum="0D71EAD11A5820FD" modified="2016-01-20" version="1">MMSKGIDVAGLEHSFRARGGAVPALDRIDLAIEPGELVTLAGPSGCGKTTFLRMIAGFVAPSSGTITVGGTTVRGPGVDRGVVFQQPTLYPWLDVRRNVALGPKLRGVGKAERRATADRYLSLVGLSDAADRRPYELSGGMQQRAQIARVLAGDPEVVLMDEPYGALDALTRERLQNELLTLWRETGKTILFITHSVDEAVFLGSRVLVMSPRPGRIVLDEKVPFSSRSLAPDEIRALPEFAETAARVRAAIAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM71</accession>
    <name>A0A0Q8UM71_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltransf_11 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19690</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895878.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46102">
        <property type="protein sequence ID" value="KRC46102"/>
        <property type="gene ID" value="ASE19_19690"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1664438at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="45"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="28237" checksum="AA46188FFE63853E" modified="2016-01-20" version="1">MTSSDSAFVGRIPEIYEELLVPLVFAEPAGHLAAAVLASDPHDILETAAGTGVLTRVLVAGGAASITATDLNEPMLVAAEALCPSERVSWQVADALSLPVPEASYDVVACQFGVMFFPDKVRGYAEARRVLRPGGSFHFNAWDRLEANPAWAVVSNALNAVVRTPLGFLRRMPYSYYDAELIASHLEAAGYTDFEVRRMTGTSVSDADHTARAICQGTPLRGEIEAHPEIDVERATEVATAALREAYGDGGFEAPISWLQVSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMG9</accession>
    <name>A0A0Q8UMG9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">AraC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_20295</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895976.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46204">
        <property type="protein sequence ID" value="KRC46204"/>
        <property type="gene ID" value="ASE19_20295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1781735at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035451">
        <property type="entry name" value="Ada-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004026">
        <property type="entry name" value="Ada_DNA_repair_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010316">
        <property type="entry name" value="AlkA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037046">
        <property type="entry name" value="AlkA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02805">
        <property type="entry name" value="Ada_Zn_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06029">
        <property type="entry name" value="AlkA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01009">
        <property type="entry name" value="AlkA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57884">
        <property type="entry name" value="SSF57884"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="4" id="KW-0234">DNA repair</keyword>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="5">
        <location>
            <begin position="98"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="511" mass="53995" checksum="2B502C7075919AE2" modified="2016-01-20" version="1">METTTERASDVGQLDFGRCYTAVQSRDRRFDGVFYTAVRTTGIYCRPSCPARTPAAANVSFHRTAAAAQTAGYRACKRCLPDATPGSPDWDVAATVAGRAMRLIGDGVVDREGVEGLATRLGYTSRHLSRLLTAELGAGPLALARTQRAQTARALVESTDLSLTDVAFAAGFSSVRQFNDTMQEVYAATPSELRGRRAAGSRSSTGGIELRIAVRTPFLGSALLRFLADRAIAGIEVAEVRDDGSGWYARTLDLPHGPGTARVELGDIADAAGAGTSYVRLRLGLEDLRDTAAAVARMRALLDADADPVAVDAHLAADAALAPLVVRRPGLRVPGHVDGTELAVRAVLGQQVTVVAARTAAARLVAEHGRPVTTDVDGLTHLFPDAGTVAAMDPTDFRMPRARGRALIGLAAALAGGELVLDRGPERGAVREQLLALPGIGPWTADYIALRTLGHPDVWLPTDVGVRNALSALPGGNDADPDRWAPWRSYALLHLWTSLSDPEPSDPEPGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMW2</accession>
    <name>A0A0Q8UMW2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_20850</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LytR/CpsA/Psr (LCP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896063.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46292">
        <property type="protein sequence ID" value="KRC46292"/>
        <property type="gene ID" value="ASE19_20850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="491753at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004474">
        <property type="entry name" value="LytR_CpsA_psr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03816">
        <property type="entry name" value="LytR_cpsA_psr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00350">
        <property type="entry name" value="lytR_cpsA_psr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="83"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="LytR_cpsA_psr" evidence="4">
        <location>
            <begin position="158"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="31"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="389" mass="42028" checksum="BE1202C89BCB12E3" modified="2016-01-20" version="1">MAGRGDDDGDFDWMYGSGPQGGSGDPEPTRRIPVQPRPGVSPPRSPDRLPPAQQYGAQPEPSSSPPPPAWSARPSRWRRPRTWFRLVILLLATWLAFLVAVPLFTWSKVDKVAYEPSGDRPSEQPGTTYLLVGSDSRAGLTKEERRKLHTGNETSELTDTIMLLHTGDGPTTLISIPRDSPLEIPGHGVSKINSAFSKGGTPLLVQTLEKATGVRIDGYVEIGFGGLVGVVDAVGGIEVCPKKRIRDKPSGLNIKKGCQSVDGATALAYARARKYSPISDLARVQQQREVVAAVGKKVLSPWSVINPVRYWKLNGAVPDFFRFGEGMGPYAASQWALAMTDAPKSCTVPLASADATWDRKRAAKLFDTIAEDRTDDITAQLCTATGLAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNS1</accession>
    <name>A0A0Q8UNS1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Phenylacetic acid degradation protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_21640</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896407.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46638">
        <property type="protein sequence ID" value="KRC46638"/>
        <property type="gene ID" value="ASE19_21640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1885467at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010124">
        <property type="term" value="P:phenylacetate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001709">
        <property type="entry name" value="Flavoprot_Pyr_Nucl_cyt_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011884">
        <property type="entry name" value="PA_CoA_Oase5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00371">
        <property type="entry name" value="FPNCR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02160">
        <property type="entry name" value="PA_CoA_Oxy5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="6">
        <location>
            <begin position="13"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="5">
        <location>
            <begin position="272"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="361" mass="39503" checksum="44EADE5F9291FFA1" modified="2016-01-20" version="1">MTGTLTEDPAARTAFHTLTVTHIEQLTDDAVAVTFDVPTEVADLFDFAAGQSLTLRRVVDGVEHRRSYSICSRAGGAPRIGVREIPEGLFSSWLVRDVRPGDRIEVQPPTGSFRADAAEGGRHLCIAAGSGITPMLSIASTVLSHPDAHVTLLYGNRTTNSVMFAEELADLKDAHHHQLDLVHVLSREPRDVELFTGRLDRDRLSELLSLLVPATDMDHVWLCGPFGMLNEAREVLAELGVPAERVHFELFYVDEPPPELRHADRVIDGVTSEVTVVLDGRSTTTAMPRDKTILDSAQETRSDLPFACKGGVCGTCRAKVCDGEVDMVRNYALEPNEVAQNFILTCQTFPVSDDVTVDFDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UP11</accession>
    <name>A0A0Q8UP11_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_22395</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896327.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46559">
        <property type="protein sequence ID" value="KRC46559"/>
        <property type="gene ID" value="ASE19_22395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1184733at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024425">
        <property type="entry name" value="DUF2154"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007168">
        <property type="entry name" value="Phageshock_PspC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09922">
        <property type="entry name" value="DUF2154"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04024">
        <property type="entry name" value="PspC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="60"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="102"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="125"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="196"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="224"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="251"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="PspC" evidence="8">
        <location>
            <begin position="30"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2154" evidence="9">
        <location>
            <begin position="289"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF09922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="393" mass="41101" checksum="789A5D6B6F120169" modified="2016-01-20" version="1">MSSPHDTETGSEPGPTGPRVTRDEVRDLGRLRRSRTDRKVSGVAGGIARHLDIDPLLVRVAFVILTFFGGGGLILYGVAWVLVPEEDTGDTVIRTEEGVRTAALIIAGVLAVASVIGDSVGGMDFPWPLMVVGLVLLVVFGSKQAKENRAGHLGGPAVPPPPPGAADPTYEGYRPWVPPTPAPPWRNVDPRKRGPILFPFALALAVLALGVVGTMDLAGVDVAVSAYPATVLGVVGVMLLVGAFYGRAGGLILVGLLAAMATAGTSVVGNHHIGQIAPTIDTADELKGSYELGVGEIVIDLTDLPESELEALDDRKLELDARIGHIRVVVPDDGLKVDVDAQITAGEVVLFDQKSDSADKATHETDDPTDPTLTIEADMVLGQVEVLTEKEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UR13</accession>
    <name>A0A0Q8UR13_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">3-isopropylmalate dehydratase large subunit</fullName>
            <ecNumber evidence="14">4.2.1.33</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Alpha-IPM isomerase</fullName>
            <shortName evidence="14">IPMI</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="14">Isopropylmalate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">leuC</name>
        <name evidence="17" type="ORF">ASE19_20280</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <reference evidence="17 18" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 14">Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 14">
            <text>(2R,3S)-3-isopropylmalate = (2S)-2-isopropylmalate</text>
            <dbReference type="Rhea" id="RHEA:32287"/>
            <dbReference type="ChEBI" id="CHEBI:1178"/>
            <dbReference type="ChEBI" id="CHEBI:35121"/>
            <dbReference type="EC" id="4.2.1.33"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate = 2-methyl-cis-aconitate + H2O</text>
            <dbReference type="Rhea" id="RHEA:17941"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57429"/>
            <dbReference type="ChEBI" id="CHEBI:57872"/>
            <dbReference type="EC" id="4.2.1.99"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="14">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 14">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 2/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Organic acid metabolism; propanoate degradation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="14">Heterodimer of LeuC and LeuD.</text>
    </comment>
    <comment type="similarity">
        <text evidence="14">Belongs to the aconitase/IPM isomerase family. LeuC type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.33" evidence="14"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895974.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46201">
        <property type="protein sequence ID" value="KRC46201"/>
        <property type="gene ID" value="ASE19_20280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="749418at2"/>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00071"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00946"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047456">
        <property type="term" value="F:2-methylisocitrate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003861">
        <property type="term" value="F:3-isopropylmalate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01583">
        <property type="entry name" value="IPMI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.499.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01026">
        <property type="entry name" value="LeuC_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004430">
        <property type="entry name" value="3-IsopropMal_deHydase_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015931">
        <property type="entry name" value="Acnase/IPM_dHydase_lsu_aba_1/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001030">
        <property type="entry name" value="Acoase/IPM_deHydtase_lsu_aba"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018136">
        <property type="entry name" value="Aconitase_4Fe-4S_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036008">
        <property type="entry name" value="Aconitase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033941">
        <property type="entry name" value="IPMI_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00330">
        <property type="entry name" value="Aconitase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00415">
        <property type="entry name" value="ACONITASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53732">
        <property type="entry name" value="SSF53732"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00170">
        <property type="entry name" value="leuC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00450">
        <property type="entry name" value="ACONITASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01244">
        <property type="entry name" value="ACONITASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 14" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="8 14" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="13 14" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="10 14" id="KW-0408">Iron</keyword>
    <keyword evidence="11 14" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="17" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 14" id="KW-0432">Leucine biosynthesis</keyword>
    <keyword evidence="12 14 17" id="KW-0456">Lyase</keyword>
    <keyword evidence="9 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aconitase" evidence="16">
        <location>
            <begin position="7"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="418"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="15">
        <location>
            <begin position="418"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="347"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="407"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="410"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00002695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF00330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KRC46201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="466" mass="49637" checksum="72439D1662C38DE7" modified="2016-01-20" version="1">MGRTLAEKVWDEHVVRSTPGEPDLLYIDLHLIHEVTSPQAFDGLRLAGRQVRRPDLTLATEDHNVPTLDWDQPIADPVSKTQVDTLRKNAAEFGVRLHPLGDVEQGIVHVVGPQLGLTQPGMTIVCGDSHTSTHGAFGAIAFGIGTSEVEHVLATQTLPQAKPKTMAVTVNGSLPEGVTAKDLILYLITQTGTGGGQGYIVEYRGEAIEALSMEGRMTVCNMSIEWGAKAGMIAPDETTFAYIEGKPEAPTGADWDAAVAHWKTLVTDADATFDKEIVIDAAQITPFVTWGTNPGQGAPLGANVPTPSDFEDEQDRIAAEKALEYMGLEAGQPLRSVKVDTVFVGSCTNGRIEDLRLAAEIIKGHKVAEGTRLLVVPGSVRVRLQAMEEGLDKVFVEAGAEWRGAGCSMCLGMNPDTLQPQERSASTSNRNFEGRQGKGGRTHLVSVPVAAATAVKGTLASPADLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUF4</accession>
    <name>A0A0Q8UUF4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893206.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48805">
        <property type="protein sequence ID" value="KRC48805"/>
        <property type="gene ID" value="ASE19_17950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1303804at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021804">
        <property type="entry name" value="DUF3375"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11855">
        <property type="entry name" value="DUF3375"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="473"/>
            <end position="501"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="501" mass="55455" checksum="F1DFFCED18ED4531" modified="2016-01-20" version="1">MSDIAGELARVKGAFAQPTLTLLHQRQAPVVITIFRAAFGRNNKPIPTARLHTQVEEHLAEIRLVGEGEVPNGTGKEICQRWMRGQWLVRSLDEQGNEVYSLTSHAQQALELVKNLARDRATLSEHRIATILGTVRRFNSEANPDRGARVTLLNEEIARLKEERDRLVDGAEMVSATEDYMVEGFTELLSLISALPSDFARVEERFATIRAEILGAFRAEDRPAGEVIDEYLARADALMTATHEGRAFEGAFTLLRDDALVTQLREDLTALLEHPLSDGILGDADRAELRGTVRLVRDGLDRVLAQRSRVTATLKEYIVSHDAARDRELEQTLRQVESELMTWMAETGPRATHDVSLLPSRVGIDHLRERFYDPADDVLPDRISAADPADAPGLSLAELMAQGGPQLGSLRERLDDALRDLLPAGSLGELFESLEPALRRPVEIFGLLHLAANRDLRTEADALEAFAAVRPDGSQRTFAVPRTPLPDPDLDRVPAPEESNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUV9</accession>
    <name>A0A0Q8UUV9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_19105</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YajC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893406.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49004">
        <property type="protein sequence ID" value="KRC49004"/>
        <property type="gene ID" value="ASE19_19105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003849">
        <property type="entry name" value="Preprotein_translocase_YajC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33909">
        <property type="entry name" value="PTHR33909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02699">
        <property type="entry name" value="YajC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01323">
        <property type="entry name" value="YajC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00739">
        <property type="entry name" value="yajC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="76"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC49004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="99" mass="10529" checksum="3DE6A0DB6883E5FE" modified="2016-01-20" version="1">MAIAAIFWLLIIRPASRQRKEAAQLQSALAVGDDVMLTSGIFGTIVDSTDDELQVEVAPGVVIRVVRGAVASVRRELDADGTPVDPADTPASPDDEEDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV65</accession>
    <name>A0A0Q8UV65_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Coenzyme A biosynthesis bifunctional protein CoaBC</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">DNA/pantothenate metabolism flavoprotein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Phosphopantothenoylcysteine synthetase/decarboxylase</fullName>
            <shortName evidence="3">PPCS-PPCDC</shortName>
        </alternativeName>
        <domain>
            <recommendedName>
                <fullName evidence="3">Phosphopantothenoylcysteine decarboxylase</fullName>
                <shortName evidence="3">PPC decarboxylase</shortName>
                <shortName evidence="3">PPC-DC</shortName>
                <ecNumber evidence="3">4.1.1.36</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="3">CoaC</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="3">Phosphopantothenate--cysteine ligase</fullName>
                <ecNumber evidence="3">6.3.2.5</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="3">CoaB</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="3">Phosphopantothenoylcysteine synthetase</fullName>
                <shortName evidence="3">PPC synthetase</shortName>
                <shortName evidence="3">PPC-S</shortName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="3" type="primary">coaBC</name>
        <name evidence="7" type="ORF">ASE19_19365</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes two sequential steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine. In the second step the latter compound is decarboxylated to form 4'-phosphopantotheine.</text>
    </comment>
    <comment type="function">
        <text evidence="4">Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>(R)-4'-phosphopantothenate + CTP + L-cysteine = CMP + diphosphate + H(+) + N-[(R)-4-phosphopantothenoyl]-L-cysteine</text>
            <dbReference type="Rhea" id="RHEA:19397"/>
            <dbReference type="ChEBI" id="CHEBI:10986"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:59458"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="EC" id="6.3.2.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>H(+) + N-[(R)-4-phosphopantothenoyl]-L-cysteine = (R)-4'-phosphopantetheine + CO2</text>
            <dbReference type="Rhea" id="RHEA:16793"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:59458"/>
            <dbReference type="ChEBI" id="CHEBI:61723"/>
            <dbReference type="EC" id="4.1.1.36"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
        <text evidence="3">Binds 1 FMN per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 2/5.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 3/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">In the C-terminal section; belongs to the PPC synthetase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">In the N-terminal section; belongs to the HFCD (homo-oligomeric flavin containing Cys decarboxylase) superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.36" evidence="3"/>
    <dbReference type="EC" id="6.3.2.5" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49132">
        <property type="protein sequence ID" value="KRC49132"/>
        <property type="gene ID" value="ASE19_19365"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00241">
        <property type="reaction ID" value="UER00353"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004632">
        <property type="term" value="F:phosphopantothenate--cysteine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004633">
        <property type="term" value="F:phosphopantothenoylcysteine decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015941">
        <property type="term" value="P:pantothenate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1950">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02225">
        <property type="entry name" value="CoaBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035929">
        <property type="entry name" value="CoaB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005252">
        <property type="entry name" value="CoaBC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007085">
        <property type="entry name" value="DNA/pantothenate-metab_flavo_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036551">
        <property type="entry name" value="Flavin_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003382">
        <property type="entry name" value="Flavoprotein"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04127">
        <property type="entry name" value="DFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02441">
        <property type="entry name" value="Flavoprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102645">
        <property type="entry name" value="SSF102645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52507">
        <property type="entry name" value="SSF52507"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00521">
        <property type="entry name" value="coaBC_dfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3 4" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="3 4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 4" id="KW-0288">FMN</keyword>
    <keyword evidence="3 4" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 3 4" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavoprotein" evidence="5">
        <location>
            <begin position="2"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="DFP" evidence="6">
        <location>
            <begin position="187"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphopantothenoylcysteine decarboxylase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphopantothenate--cysteine ligase" evidence="3">
        <location>
            <begin position="192"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="290"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="308"/>
            <end position="311"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="328"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="346"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="350"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC49132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="406" mass="41432" checksum="3D6095DCB62C9642" modified="2016-01-20" version="1">MLGVSGGIAAYKACELLRRFTESGHDVTVVPTAAALEFVGAPTWAALSGKPVSAEVWTGVHEVPHVRLGQTADLVVVAPATADLMAKAAHGLADDLLTNTLLTARCPVVLAPAMHTEMWEHPATAANVATLRSRGVLVIEPAEGRLTGADTGKGRLPDPEEIFEVARDVLGRAAAGGSGAPGAPADLAGRHVVVSAGGTRERLDPVRFLGNRSSGRQGYALARAAAARGAEVTLIAANVSLGDPAGVKVVRVESTAELRDAVLTAAATADAVVMAAAPADFRPTAASDTKIKKSDDGSAPSITLQQNPDILKEISQHRVRPGAVIVGFAAETGDATGSVLDLARAKLARKGCDLLVVNDVSGGAVFGSTDNEAVILGADGSSVEVPHGSKSALAHQIWDEVVARLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVB1</accession>
    <name>A0A0Q8UVB1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19345</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893446.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49044">
        <property type="protein sequence ID" value="KRC49044"/>
        <property type="gene ID" value="ASE19_19345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="821953at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359466" evidence="1">
        <location>
            <begin position="21"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="328" mass="34076" checksum="82599D97865B3320" modified="2016-01-20" version="1">MRRLQLPTLVLALASVLALAACQGQGPLAGPDDTVDAVASGGVEPPGLWDGQSLLLEGALYVLSGPDAYSADVLEARLPGGELRRLTANPRGFGISALSASDAGIALASAENGSDQLRVLAGGRSALWGRQSAMGPSIDGRGRVLAARGTDTGSATDVYVPGRPRRELLPNDPRDPAAVWGPHGTVLVAAPTQPGPGVATRLQERDVQGRLVRDLGRPGGRFSLLANPYPDRQPVTALRPGMHATGFVLTDDLKRTIPVPSDWDIGCWNPHGTALLVTKGTSVGLWRPGRPRQVTVVGASAVPIFDCAWLTGPIRGLPPALPERSPSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVC9</accession>
    <name>A0A0Q8UVC9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20740</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896043.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46272">
        <property type="protein sequence ID" value="KRC46272"/>
        <property type="gene ID" value="ASE19_20740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1446078at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043777">
        <property type="entry name" value="DUF5719"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18986">
        <property type="entry name" value="DUF5719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="483" mass="49152" checksum="E1719C054AA52A26" modified="2016-01-20" version="1">MTDQSGQSPKATGRRASTGRERRIDLLVALAILAPAVVAISVGLIGREDNPVGGPQAPTTSALTSATVVCPSGLDDAGTVRVTRTPDVPGGKLAVATAPRVRGNSASVTTRQGKAITVAQGSSVVVPVSNGPTVVDGRGRAAPGIVAGREGRLAVPECRAPSYDEWFVGIGASARHSTVVELVNPDDGDAVVDLALHGATGPVEEPALRGIEVPAHGVKRLDLARVAPREEATAAHLTVVRGRVTATARTTWDPLGRGRVTTDFLPSDADPATSSLLLGIPDKPAQATLYVANPGDDEVRVSLRMVTEQATFTPTNAPDITVAAGAMETVDLSKLLRGAVAKGVVGLELESTGPVASSFLGLVDDDLVLLAPAPEVSEPAAVVVPTGAKTLVLGGARKTAVVHVTSYDARGRELAKKQVEIGADRAVTLALPAQATSVTVLSRATPIGAVVLLPAGGRNAGLATLRVRPAELEAQIPVVIPAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXX4</accession>
    <name>A0A0Q8UXX4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA polymerase-binding protein RbpA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rbpA</name>
        <name evidence="2" type="ORF">ASE19_15875</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Bind 1 Zn(2+) per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Forms a complex with the RNAP catalytic core and with free principal sigma factors.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RNA polymerase-binding protein RbpA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50094">
        <property type="protein sequence ID" value="KRC50094"/>
        <property type="gene ID" value="ASE19_15875"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001000">
        <property type="term" value="F:bacterial-type RNA polymerase core enzyme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045893">
        <property type="term" value="P:positive regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01483">
        <property type="entry name" value="RbpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038638">
        <property type="entry name" value="RbpA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025182">
        <property type="entry name" value="RNApol-bd_RbpA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13397">
        <property type="entry name" value="RbpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="23"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="102" mass="11304" checksum="5DFFBD9DAC464FC3" modified="2016-01-20" version="1">MGEAERGEAAPRQAVTYFCANSHRSVITFSIEATAPDSWDCPKCGLPAGLDSENAPPAPKIEPYKTHLAYVKERRSDKEAEVILDEAIQLLRSRRKSGEIIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXZ2</accession>
    <name>A0A0Q8UXZ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thioesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893606.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50138">
        <property type="protein sequence ID" value="KRC50138"/>
        <property type="gene ID" value="ASE19_16125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1814691at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="39"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="124" mass="12943" checksum="C5786D728A61D317" modified="2016-01-20" version="1">MSAPRTDAYAALLGIDVTGHGGGRAEAQVQVTDDHLNPHGTAHGSFLFSLAGIALAAAANDDEHSGVVSAVHIDYVRPARPGDALLATAEVAERLAKEDLFVVRVTHGDELVARATGRANRRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY17</accession>
    <name>A0A0Q8UY17_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16145</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893610.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50142">
        <property type="protein sequence ID" value="KRC50142"/>
        <property type="gene ID" value="ASE19_16145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="273524at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359521" evidence="2">
        <location>
            <begin position="27"/>
            <end position="533"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="68"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="533" mass="58327" checksum="82F141A176117D1B" modified="2016-01-20" version="1">MLRRTTAILTLAICLLVPQLSGPARAEGDMDIDPQDLLAQVPGILQALLVDRTDMLRCPELIGGTIGLPERADETGRQGVDEGNPLRAGDPSAAPAGLPDQVVFRSTTQTFNRRYQFVLAAGNIWYRSNTEVTGIREPWAPLVTSACFAGRLVGISADDDELIAVDSDRWVYGMDGALRTPQQFNWSLRWGPLFWTGPGRMLPTGISTWSWSVVSQVEDLTWPDDAGNAHAVGAGKVSHIWTLSHGGQRLTYLDPWLAKDESYEMCGPHRGRFRAVNMSASGSTIFVVGPHGDLFTRLYDFDIAGADPLFFDYAYADQRGLAKPRIQLPSPAWIEQPKVPGTITSRISIHKVGRGAIHRQLRVEGRRSGQVGYWHKDIRARAWSFTPTGGALVGRVLDNPASDTSAAGLGGGEDGRYVGTVPGGTVTIADFNTYCTPSTVRVRLTTGESFTLRLHTVDNIREFRRARGLDTQPRMFNGTLEVPPALRSSADPQVRAFVTKLGSGRFIKANLDGTTSRLVFRTQPWRLSFVSPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY34</accession>
    <name>A0A0Q8UY34_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16375</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893649.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50181">
        <property type="protein sequence ID" value="KRC50181"/>
        <property type="gene ID" value="ASE19_16375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="520970at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="439" mass="46962" checksum="D5A3F153E1A178B3" modified="2016-01-20" version="1">MGKAEDFPHASVIEGVRFTAQVGVPNVIQGLFKKRELPTKVAGVARADLFAFTLVQGLVRKYGPGPFWVRVATDEALLLSDPADIEFVLGGSPDPFASDPPAKKAGMSAFQPDALTLSRGDLWRNRRDFAEAVLQTGRPLHSLALRMVKVAAQEAAGLDGEIGYDDLNTSFQRLTRRVVFGDAAADDTDLTALLGDLMAAGNKTPGKPAKGYDDLVARIASYVETAEKGSLVSLVAAAPHDDATDVPGQLIHWLFAMGDTLPANLARALAVIGSHPEVRTEVYAELEGTVLTRAKEVAGLDYLGGVILEAMRLWPTTPLFGRVTTRDVTFPDGKVLPEGSQLLIHNLHNHRDRGRVEYADRCAPGEWATGDAGSSWGFNFFSHGPQGCPGAGMSVFLGQAFLAALLTRATPELVSPSLNPSKPLPYGLDLFAIRIKLTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY35</accession>
    <name>A0A0Q8UY35_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1990 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15445</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893484.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50015">
        <property type="protein sequence ID" value="KRC50015"/>
        <property type="gene ID" value="ASE19_15445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1586328at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018960">
        <property type="entry name" value="DUF1990"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014457">
        <property type="entry name" value="UCP010260"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09348">
        <property type="entry name" value="DUF1990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF010260">
        <property type="entry name" value="UCP010260"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1990" evidence="1">
        <location>
            <begin position="7"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09348"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="175" mass="19348" checksum="004E6F80FD66ABF4" modified="2016-01-20" version="1">MDDALSYSAVGATRVADERWDAAPPGYRRFERTVSIGRGEDVWQEASAALMEWGVKTRSGFEVVAGPHESLRVTAGQDRTLVAVLGPLRLREPVRVVAVVDEPTRRGFAYGTRPGHPVSGEEAFVVHRSAHGEVWLTLRSLARPARGGWRIAFPGALVAQRLYRRRYLRSLGRSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYA8</accession>
    <name>A0A0Q8UYA8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16095</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50132">
        <property type="protein sequence ID" value="KRC50132"/>
        <property type="gene ID" value="ASE19_16095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1912404at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010282">
        <property type="entry name" value="Uncharacterised_HutD/Ves"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37943">
        <property type="entry name" value="PTHR37943"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05962">
        <property type="entry name" value="HutD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="187" mass="19561" checksum="ABCF0CF847FFB3A2" modified="2016-01-20" version="1">MDWTAMTTTITRAADLPRVPWRNGRGLTTELALGDPPDDFAWRVSLAEVGQSGDFSLFPGIDRTIVLVEGDGMVLHLPDGPQPLARDVPFAFDGGLPVTCTVERPTRDLNLMTRRGTTTGDIEVRQVAGPVELAADAAVTVMVVLDGALVLDGSDLGTGDVAVLTGAGTARLDGSARVALVRVVQAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYI6</accession>
    <name>A0A0Q8UYI6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_15995</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50348">
        <property type="protein sequence ID" value="KRC50348"/>
        <property type="gene ID" value="ASE19_15995"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="1"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="33"/>
            <end position="40"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="296" mass="31611" checksum="499F1E78BC25EEDB" modified="2016-01-20" version="1">MEIHDLVKAFGSFRALDGLDLSVVPGEVHGFLGPNGAGKSTTIRVLLGLLRSDAGTVRLLGGDPWRDAADLHRRLAYVPGDVSLWPNLSGGETLDLLIRMRGADPRQSRRDEMVERFALDPTKRGRAYSKGNRQKVALVAAFATDPELLILDEPTSGLDPLMEQVFNDCVAEHTARGATVLLSSHILSEVERLADRVTLIREGRVVETGTLDSLRHLQRTRLVAGLSGEVPDLGGLDGVHDVAVEGAKVTCTVDADALPGVLAALTAAGVTSLTSSPPSLEELFLDAYRDRAGAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYJ7</accession>
    <name>A0A0Q8UYJ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">3-ketosteroid-9-alpha-hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_15775</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50342">
        <property type="protein sequence ID" value="KRC50342"/>
        <property type="gene ID" value="ASE19_15775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1885467at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001709">
        <property type="entry name" value="Flavoprot_Pyr_Nucl_cyt_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000951">
        <property type="entry name" value="Ph_dOase_redase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00371">
        <property type="entry name" value="FPNCR"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00409">
        <property type="entry name" value="PHDIOXRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="1" id="KW-0288">FMN</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="7">
        <location>
            <begin position="1"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="6">
        <location>
            <begin position="272"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC50342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="361" mass="38785" checksum="066C1B8CA9C01EC9" modified="2016-01-20" version="1">MESFVLDVVDVVEETADAKSISFAVPAGAEEKFDYKPGQFLTVAVPSTQTGIAARCYSLSSSPHDGGPLTVTVKRTAEGYASNWICDNLAVGDTLRVLPPSGIFTPASLEADLLLFGGGSGVTPIMSITRTALAHGSGRIVVFYANRDEKSVIFASEFARLAAENPDRLQVIHWLESVQGLPTEAQMKAFCAQYAGFDSFVCGPAPFMKMVTTVLKELEVPRSLRHQEKFVSLGGNPFGDIAEVQQAQAEISSADDEGGADAAFSDAPAGPVKLEVELDGEEFTFDDWDPRTKMLDFLEGKGVKAPYSCREGECSACAIRLLEGDVRMVHNDVLDKDDLADGIRLGCQSVPLTDHVKVTYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ23</accession>
    <name>A0A0Q8UZ23_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADH:flavin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16345</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893885.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50356">
        <property type="protein sequence ID" value="KRC50356"/>
        <property type="gene ID" value="ASE19_16345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1033671at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="1">
        <location>
            <begin position="13"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="44691" checksum="271AAD87CA72DD10" modified="2016-01-20" version="1">MTKTPTAVAALQQPFPLPHGTALPNRLAKAALSESLSRPDHTPGTRIKTLYRRWSDSGAGLVITGNVMVDRRAIGEPGNVVVEDGRSHADLVEWADIIKANGAVAWAQINHPGRQAPRTLTPRPVAPSAVALPESGGMFAQPRALTGAEIEDIIARFAATAGHVVRAGFDGVQIHGAHGYLVSQFLSPLANQRTDEWGGTPEKRRRFVLEVARAIRAEIGTDKTMAIKLNSADFQRGGFSEDESIEVVHALAAEGIDLLEVSGGTYSSAAMLGVDPTLKESTRKREAYFLDYALRVRAELPDLPLMLTGGFRTAEAMEDAVASGAIDVVGLGRPLTVEPDVPGALLDGTTTESDVRPKRSGIKLIDSLTELTAYTVQMWRMADGKEPAPRRHPALNVAQYLVRNGRDSVRVGRRGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZF0</accession>
    <name>A0A0Q8UZF0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Bifunctional protein PyrR</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="4">Pyrimidine operon regulatory protein</fullName>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="4">Uracil phosphoribosyltransferase</fullName>
                <shortName evidence="4">UPRTase</shortName>
                <ecNumber evidence="4">2.4.2.9</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="4" type="primary">pyrR</name>
        <name evidence="6" type="ORF">ASE19_19290</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.</text>
    </comment>
    <comment type="function">
        <text evidence="4">Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>diphosphate + UMP = 5-phospho-alpha-D-ribose 1-diphosphate + uracil</text>
            <dbReference type="Rhea" id="RHEA:13017"/>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.9"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.9" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893435.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49033">
        <property type="protein sequence ID" value="KRC49033"/>
        <property type="gene ID" value="ASE19_19290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1725260at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004845">
        <property type="term" value="F:uracil phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01219">
        <property type="entry name" value="PyrR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023050">
        <property type="entry name" value="PyrR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="5">
        <location>
            <begin position="20"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="PRPP-binding" evidence="4">
        <location>
            <begin position="106"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005565"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC49033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="183" mass="19884" checksum="90EC0866CE577FE6" modified="2016-01-20" version="1">MPTHAQSPAEGRVVLDAGDISRALVRISHEILERNKGAEDLLLLGLHTRGVPLARRLADNIAKVEGTTPPTGSLDVTMYRDDLRSHPTRAPHRTELPAGGIDGKTVVLVDDVLYSGRTIRAALDALSDLGRPAVVRLAVLVDRGHRELPIRADHVGKNLPTARSERVSLRLSEIDGEDEVTIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZI1</accession>
    <name>A0A0Q8UZI1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893467.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49065">
        <property type="protein sequence ID" value="KRC49065"/>
        <property type="gene ID" value="ASE19_19460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2098147at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="66" mass="7250" checksum="B8EB65DDD740F21A" modified="2016-01-20" version="1">MAMMNSEARKRSVTTPDEPTALAARLADAWDREADNEDARGNGFAAVILHQHARQLREALHPPLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZR0</accession>
    <name>A0A0Q8UZR0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_20955</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896082.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46311">
        <property type="protein sequence ID" value="KRC46311"/>
        <property type="gene ID" value="ASE19_20955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1255575at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359571" evidence="3">
        <location>
            <begin position="27"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="408"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="190"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="378"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="190"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="444" mass="45432" checksum="A34751EE972E445E" modified="2016-01-20" version="1">MDRPLGTLGTSAVVAVLLLGGPPATAAPDDDPGPALAGTPVAGASGSATPPALTVGRYLDHLPARGSLGYRLPRTAAGSTFHVAALFVGAGDSVGEGVRIEVGTTPGDEGCGSGGVFRPTLGEQAPVLFTTVTTWTDVDDHECAVADDLFLTLHAPDDPADAGREVELLVFEEPPLSDYGMGLLPDPAPPAWTPLAPAASPREVPPGTTPTSAPVVRDGSYRLTLRPGRTQVLAVPLDWDQTVQAQLDARLPVGAPGPGEIAIDVVGPMLGTSEVSFTMTRPDDWTVPTTAPGRLRIGAQSQVVSYAHRDSYDAAVSTEALAGIHYVVVRWPGTDQAGPAAAALEVPATVTLRTTGEATDGVPSYTPVEGLLGPQAGSRLVDGTLQAPPVDAPAAAPVDEPEDGPQPWLVAVAGLAGIGVVGGLVRARRRAVVSREGTYPRHRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0H3</accession>
    <name>A0A0Q8V0H3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48867">
        <property type="protein sequence ID" value="KRC48867"/>
        <property type="gene ID" value="ASE19_18285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="973886at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359582" evidence="1">
        <location>
            <begin position="33"/>
            <end position="474"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="474" mass="48782" checksum="5589D12C476EEA8F" modified="2016-01-20" version="1">MTGMTRTISARARLALGALVVALGALAGTAWASYAGREHVATATILLHPLEGNAYSPGGRGDDLVNLETEAQVLRSDAVARAVLRRLGSSGTPARLLASVSVVVPPNTQLLEISVRAGDDATAAERASAFGDVYLAFRKSRTESSIFGRTSRLEELVGVREGERKAALGRLERLSSTAPERRLLEQQVQEIVVQIGSLRAQLATAQAIGLDPGQVVTPGHVVAAGPTSDPRTMALVGGGAALLAGLAVAVVRSGRRTVTLVGDAAAVAECGLLPLGAVAPPVGADDAVIARARSVVLAVGPDRPLVVTVAPVTAGVPTTFDALVGAFANARYEVVAIDLARLPDRVALAELVLQRASVSDVLVQVGEFRSHLRPLDDLSDDAGFADLVASAQMRHCLEDLAKRADLVLVGAPPLRSPVGRALLAASRAVVVEAQTSVVTRPDLTELVEEAARLDGTIAGVVLVGVPGASSEVTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V257</accession>
    <name>A0A0Q8V257_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Diacylglycerol O-acyltransferase</fullName>
            <ecNumber evidence="5 11">2.3.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">ASE19_15155</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>a 1,2-diacyl-sn-glycerol + an acyl-CoA = a triacyl-sn-glycerol + CoA</text>
            <dbReference type="Rhea" id="RHEA:10868"/>
            <dbReference type="ChEBI" id="CHEBI:17815"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="ChEBI" id="CHEBI:64615"/>
            <dbReference type="EC" id="2.3.1.20"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Glycerolipid metabolism; triacylglycerol biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the long-chain O-acyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.20" evidence="5 11"/>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896544.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51480">
        <property type="protein sequence ID" value="KRC51480"/>
        <property type="gene ID" value="ASE19_15155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="279287at2"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER01007"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00282"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004144">
        <property type="term" value="F:diacylglycerol O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019432">
        <property type="term" value="P:triglyceride biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014292">
        <property type="entry name" value="Acyl_transf_WS/DGAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045034">
        <property type="entry name" value="O-acyltransferase_WSD1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009721">
        <property type="entry name" value="O-acyltransferase_WSD1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004255">
        <property type="entry name" value="O-acyltransferase_WSD1_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31650">
        <property type="entry name" value="PTHR31650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03007">
        <property type="entry name" value="WES_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06974">
        <property type="entry name" value="WS_DGAT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02946">
        <property type="entry name" value="acyl_WS_DGAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11 15" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8 11" id="KW-0319">Glycerol metabolism</keyword>
    <keyword evidence="6 11" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="9 11" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11 15" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="WES_acyltransf" evidence="13">
        <location>
            <begin position="12"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="domain" description="WS_DGAT_C" evidence="14">
        <location>
            <begin position="334"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="168"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU361241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF03007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF06974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC51480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="486" mass="52150" checksum="92AF81B9EDBE3712" modified="2016-01-20" version="1">MVSVPGFRPIDPTSAAFLLAENRNQPMHVGGLQLFEPPADAGPGYVREMFESMRDTEKIAPLFLKHPYRSAKTAGTLVWRDDEQFDIEHHVRHSALPQPGRVRELLELVGRLHSTRLAWERPLWETHVIEGLADGRVAMYTKLHHSLVDGISAMRLMASVLSSDPDRRNMGAPFADGAARRRKPEETAESLPAAAVDAATTAAKTIADLPADVLRGAMSISAEAAGMPIALVKTLRKGLRNETSAVSLAAPRTIFNQSITGARRFAAQDWPVERMRAVGKSTGTTINDVVLAMCSGAMRTYLDELDALPDRSLVSMVPVGLNAKQAGTASSAGGNAIGSVMVRLATDLADPADRLRTISRSMKDGKEALSSMTPTQIVAMSAIGMAPSIVIPALGMQGMVRPPFNLIISNVPGPRVPHYWNGAQLVGNYPVSIPINGMALNITCTSYAGNMGFGLTGCRRTVPHLQRLLTFLDDELAALEKAAGIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V279</accession>
    <name>A0A0Q8V279_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyl-CoA acetyltransferase</fullName>
            <ecNumber evidence="2">2.3.1.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15665</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.9" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893526.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50057">
        <property type="protein sequence ID" value="KRC50057"/>
        <property type="gene ID" value="ASE19_15665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="311458at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003985">
        <property type="term" value="F:acetyl-CoA C-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000905">
        <property type="entry name" value="Gcp-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00814">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TsaD" evidence="1">
        <location>
            <begin position="31"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="387" mass="40885" checksum="BB7CD0E1446F60BF" modified="2016-01-20" version="1">MGKQPAAIIGVGQTHHRAKREDVSMAGLCREAIDRALLDANLTLDDIDAIVVGKAPDLFEGVMMPELFLAEALGAAGKPLLRVHTAGSVGGSTAIVASSLVQAGVHKRVLTVAYEKQSESNAMWALSVPLPFNMPVHAGAGGYFAPHVRSYIRRSQAPTHVGAIVAAKDRNNALKNPYAHLHNEGTTVESVLASQMLWDPIRYDETCPSSDGACALVIVDEDTARSSPNPAWIHGTVMRSEATTAAERDQVNPQAGRDAAAALWKQAGITSPIDEIDAAEIYVPFSWFEPMWLENLGFAAEGDGWKLTEAGETAMTGRIPVNCSGGVLSSNPIGASGMLRFGEAALQVRGAAGEHQVDGARKALGHAYGGGSQFFAMWVVGADKPEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2M3</accession>
    <name>A0A0Q8V2M3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16495</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893670.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50201">
        <property type="protein sequence ID" value="KRC50201"/>
        <property type="gene ID" value="ASE19_16495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1942614at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.4190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002639">
        <property type="entry name" value="UreF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038277">
        <property type="entry name" value="UreF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01730">
        <property type="entry name" value="UreF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0143">Chaperone</keyword>
    <keyword evidence="1" id="KW-0996">Nickel insertion</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="219" mass="22457" checksum="BB0426C9EA097145" modified="2016-01-20" version="1">MADPELLAMLLADARLPVAGHTQSGTLEGAVMGGLSAADVPSYLRARLVGVTRVEAGTAVAARRAVLDAEPLAAVETAWAARTVTPAVRVASRTQARALLRLASRLWPDAVLPLAPLPAPSRSVVLGALAGGLGLGAESLARVVAYDDVQTVCAASLKLLPLDPAVVTGWVVDALPGVEEVVAATAGIKDPSEVPAVAAPQIEAWAHAHARTTRRLFRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3G3</accession>
    <name>A0A0Q8V3G3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Zn-dependent hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_18795</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="2">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M20 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893851.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49120">
        <property type="protein sequence ID" value="KRC49120"/>
        <property type="gene ID" value="ASE19_18795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="829830at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016813">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010158">
        <property type="entry name" value="Amidase_Cbmase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32494">
        <property type="entry name" value="PTHR32494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001235">
        <property type="entry name" value="Amidase_carbamoylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01879">
        <property type="entry name" value="hydantase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="197"/>
        </location>
        <ligand>
            <name>allantoate</name>
            <dbReference type="ChEBI" id="CHEBI:17536"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="255"/>
        </location>
        <ligand>
            <name>allantoate</name>
            <dbReference type="ChEBI" id="CHEBI:17536"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="268"/>
        </location>
        <ligand>
            <name>allantoate</name>
            <dbReference type="ChEBI" id="CHEBI:17536"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="359"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR001235-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001235-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC49120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="386" mass="41000" checksum="56FB0824F0E551A8" modified="2016-01-20" version="1">MWRDLVPIGRSASSGGYFRQPWHAAELELRAWFREAATARGLELEEDPFGNLVAWWGPAGDSGKVLTGSHLDSVLDGGAYDGPLGVVSSFAALDLMRERGVEPNRRLGVAAFVEEEGSRFGRACLGSRLATGTTTWDGARELTDRDGVRLGDVIEGGESRLLEGVATYVELHVEQGRGLIERDAPVGVHDAIWPHGRYRYDIAGRADHAGTTRMEDRADPMLTYAMTALAANKQARLSGQRATFGRIDVRPNGTNAVPSHVTGWLDARAESDAALSALVAEIERQATERAGRDGTTVTVTAESVSGEVAFDVALRDELAARLGGVPVLPTQAGHDAGILQDAGIATAMLFVRNPSGVSHSPYETAEMADCLAGVEALATALTGLVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3Z7</accession>
    <name>A0A0Q8V3Z7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">AraC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_16365</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893647.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50179">
        <property type="protein sequence ID" value="KRC50179"/>
        <property type="gene ID" value="ASE19_16365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1268974at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="3">
        <location>
            <begin position="18"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="128"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="168" mass="18728" checksum="332B195CB76851DB" modified="2016-01-20" version="1">MSTDPAREQYLQTLGLLRRVRDRIDREYARPLDVEALARDVHLSAGHLSREFKRAYGEPPYSYLMTRRIERAMALLRRGDQSVTDVCFAVGFSSLGTFSTRFTELVGVSPSAYREAVAVGGEGLLEPPSCETKKVTRPLRRGGAQTSPDAADEVVRNREAPRFEAPLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V630</accession>
    <name>A0A0Q8V630_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Flagellar basal body protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_09290</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894561.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52623">
        <property type="protein sequence ID" value="KRC52623"/>
        <property type="gene ID" value="ASE19_09290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="704242at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001444">
        <property type="entry name" value="Flag_bb_rod_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020013">
        <property type="entry name" value="Flagellar_FlgE/F/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010930">
        <property type="entry name" value="Flg_bb/hook_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037925">
        <property type="entry name" value="FlgE/F/G-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00460">
        <property type="entry name" value="Flg_bb_rod"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06429">
        <property type="entry name" value="Flg_bbr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117143">
        <property type="entry name" value="SSF117143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03506">
        <property type="entry name" value="FlgEFG_subfam"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_bb_rod" evidence="3">
        <location>
            <begin position="8"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="Flg_bbr_C" evidence="4">
        <location>
            <begin position="203"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="282" mass="29246" checksum="CDBFBDE642DBF0B7" modified="2016-01-20" version="1">MLRSLFAGISGLRVNQTMLDVTGNNIANANTTGFKASTTVFSDTLSQMLTAASGGNAERGGTNPIQIGLGVQLAATSTNFGQGSAQLTGRTTDVMLNGDGFFVLRDGAENVYTRAGAFTFDQTGVLVAPSGMRVQGYALDGAGLPTGGPIDVDLHLIDGTLPPGTELTSYSIGADGKVRGVFSDGVQRDICQLAVADFTNPMGLEKIGDTTFRESANSGAVQLGIAGQGQRGQIQAGALEMSNVDLSAEFTNLILAQRGFQASSRVITTSDQVLEELVNIKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6G6</accession>
    <name>A0A0Q8V6G6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894906.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52974">
        <property type="protein sequence ID" value="KRC52974"/>
        <property type="gene ID" value="ASE19_11280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1795146at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="5"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="84"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="159"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="239"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="297" mass="32275" checksum="D05B1EEC3EBD62DA" modified="2016-01-20" version="1">MTTLLRTERARRGLRATDLAEEIGVHPMSILRWERRERLPGPVHIHALARVLELEPARVAGFFDDARSSVPAPATEVGHRGQALRDLRWRAGATAAGIARRLDLPVSTVYNWEAGRARIPAARIEGLAEVLGLSAETLVARLAAPATGIGRPDLPMSPLRRLRHRARLSQARAAAAAGVDRHALGAWERGAGSPPLAALRHLSRTYGVPVSHVARAAGTEPPHLLDRGRWRPGDLPAVIRTLREWAGLTQGQLADRCACSTAAVRTWESGRVVPSARMRTRLERAFRLPSGTLDAAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6M9</accession>
    <name>A0A0Q8V6M9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895007.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53077">
        <property type="protein sequence ID" value="KRC53077"/>
        <property type="gene ID" value="ASE19_11855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="884088at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="10"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="360" mass="38170" checksum="16E0BDAA95EA5768" modified="2016-01-20" version="1">MRAVVLTGHGGIDRLVRRDDVPTPTPGPGEVLVRVGACGLNNTDINTRTGWYDRKVESSVTEELGLHGRDDDAASSWNKATVAFPRIQGAAVAGHVAAVGPRVAPERVGERVLVDPCVRDPRLPLRAQLVEYLGSERDGGFAEFVAVPATNAHRITTSLTDAELATFPCSYDTAEEMLVRADLREGETLLVTGAAGGVGTALIQLALVRGSRIVAVASESKRERLLALGAHLFVPRDSADLQGSVEALVGEQAVDVVADVVGGPLFGPILKVLRRGGRYTTSGAIGGPTTAMDLRDLIYKDLEMHGITNPTADTFGRLAELIEGGRLKPMLEASYPLAELSAAQEQLLKRTHVGKLVVVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6P5</accession>
    <name>A0A0Q8V6P5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894816.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52884">
        <property type="protein sequence ID" value="KRC52884"/>
        <property type="gene ID" value="ASE19_10765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1497748at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="183"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="222" mass="24633" checksum="0E515053E483AFFD" modified="2016-01-20" version="1">MAKKLKAWIHVGMPGTGDVIEPALAHHHEALVELGVASLAHAPAESFRAAVEMTRAHKDWGLKRADVEGQWTRLVRRAQRTRSDLVFSQPLLAHAAPEQVALLVDGLAGYQVHVVVTTGIDDETATLGRWASAVRKPERLHVIETDGREPRDVWKTFGKLVGFGTASLRLDTVPNATGPVQSLPDALRELERLARRNASLEVRLEELDRKRRKLKRRLGQVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6R4</accession>
    <name>A0A0Q8V6R4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17680</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893161.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48759">
        <property type="protein sequence ID" value="KRC48759"/>
        <property type="gene ID" value="ASE19_17680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1956034at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046040">
        <property type="entry name" value="DUF5998"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19461">
        <property type="entry name" value="DUF5998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="189" mass="20022" checksum="1E8F672822DC2434" modified="2016-01-20" version="1">MTDRDRHPELNAAIDRTGYYPEVVADAVNGACGGESVVSFYVHHEPTFERDEVRRHQTVIVLTPTRLILAHTDEHAGDDLLPEPYTSTSTEAVSLSAVANVVVTRMTTNPTAGPRPPAEAVLTIGWGAVSRLDLEPAACDDPQCEADHGYTGTMTSDDFSLRVSAAADGTDAVAGLLSFAASLSALTRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V728</accession>
    <name>A0A0Q8V728_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">FAD-binding dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_11710</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894978.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53048">
        <property type="protein sequence ID" value="KRC53048"/>
        <property type="gene ID" value="ASE19_11710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="153138at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033765">
        <property type="term" value="F:steroid dehydrogenase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008202">
        <property type="term" value="P:steroid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014614">
        <property type="entry name" value="UCP036654"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43260">
        <property type="entry name" value="PTHR43260"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036654">
        <property type="entry name" value="UCP036654"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_2" evidence="3">
        <location>
            <begin position="14"/>
            <end position="556"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="573" mass="61478" checksum="1B1C328B74D4A729" modified="2016-01-20" version="1">MTEENAVDPTFQPDAIVVGAGLAGLVATYEATRAGKKVLVLDQENRANLGGQAFWSLGGLFFVDSPEQRRMGIKDSPELAWQDWQGSAGFDRLGEDPDDEGPDRGEDHWGSRWARAYVDFAAGEKRDYLRGLGLKSLTFVGWAERGDGSASGHGNSVPRFHLTWGTGPEVVRVFLEPVEAAEAAGLVRFAFRHQVDELVVEDGVCVGVSGSVLAPSDLPRGEKSSREVVSSFSHRAPAVVVSSGGIGHNFELMRANWPTERVGPAPEHMIAGVPAHVDGRMLAISEAAGANLVNKDRMWAYVEGIHNWDPVWPDHAIRILPGPSSMWFDADGHRLTGMSGVPGADSIGSMKQILATGADYSWFVLTQSIIEKEFALSGSEQNPDWTEKDIKMMLKERLGKGATSPVEAFKEHGSDFVVATSFDELVAGMNTIARGGRVLDAGLLRKQIEDRDRQVDNPFCKDAQVMAIHNGRKDRTGKIMRVAKPHKILDPAHGPLIAVRLNILSRKTLGGIETDLDSRVVQADGSVLPGLYAAGEVAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAIAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V746</accession>
    <name>A0A0Q8V746_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LLM class F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16270</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893629.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50161">
        <property type="protein sequence ID" value="KRC50161"/>
        <property type="gene ID" value="ASE19_16270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019952">
        <property type="entry name" value="F420_OxRdatse_Rv1855c_pred"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03560">
        <property type="entry name" value="F420_Rv1855c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="289" mass="32132" checksum="B54FA26EB315E055" modified="2016-01-20" version="1">MDLGIHYATFTHPDWRSTLADRLEATVRVADQGGISLVTVMDHYFQMVDFGGPFEPMLEGYTTLGYLAGRTENVDLGLLVTGVTYRHPGLLAKIVSTLDVLSRGRAWLGIGAAWYDREHAGLGVPFPPLAERFERLEETIRISEQMWSDDDGPFEGTHYQLAETICLPRPVRGRVPLMIGGQGERKTLRMVARYADACNLFTGEGVSGVAGKLEVLRRHCDDLDRDYDAIRKTILWFGDPVGEADRFASEMEEYARLGVTLATAMPASDDPEAWAAELVEKVRPRVDGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7G4</accession>
    <name>A0A0Q8V7G4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">LMWPc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12840</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895704.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53242">
        <property type="protein sequence ID" value="KRC53242"/>
        <property type="gene ID" value="ASE19_12840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1800563at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023485">
        <property type="entry name" value="Ptyr_pPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036196">
        <property type="entry name" value="Ptyr_pPase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01451">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00226">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52788">
        <property type="entry name" value="SSF52788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LMWPc" evidence="1">
        <location>
            <begin position="4"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="132" mass="13950" checksum="216A8458FF6228DD" modified="2016-01-20" version="1">MSRPTVLFVCVHNAGRSQMAAGYLQHLAGDRVEVLSAGSQPADQVNQVAVAAMAEEGIDIAGAAPKVLTSSAVEVADVVVTMGCGDECPYFPGKRYDDWVLDDPAGQGIDAVRPIRDEIRRRVEALVAELVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7I4</accession>
    <name>A0A0Q8V7I4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12005</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895031.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53103">
        <property type="protein sequence ID" value="KRC53103"/>
        <property type="gene ID" value="ASE19_12005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="27938" checksum="05893C7BDB4F91F4" modified="2016-01-20" version="1">MENDLKVERSGHTLVITLNRPASLNAVTTPMSLAIADALEEAQTDDDIRSVVITGAGRAFCAGADIKESLAGRPEIPERYQAWGWGGFVRHFISKPVIAAVNGLALGGGMELVLATDLVVADEKAVFGLPEVKIGTLAAGGGCFRLLQELPPKVALKLLWTGDSIDADEALRLGLINEVVRDGRSTLEAALELAASINKNAPLSVQAIKRIAYGVGDGTDVEDNFWRVTKKEQLGILQTEDAVEGRRAFVEKREPAWQNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Y2</accession>
    <name>A0A0Q8V7Y2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L34</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmH</name>
        <name evidence="6" type="ORF">ASE19_14025</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the bacterial ribosomal protein bL34 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897051.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53452">
        <property type="protein sequence ID" value="KRC53452"/>
        <property type="gene ID" value="ASE19_14025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2069770at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00391">
        <property type="entry name" value="Ribosomal_L34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000271">
        <property type="entry name" value="Ribosomal_L34"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020939">
        <property type="entry name" value="Ribosomal_L34_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14503">
        <property type="entry name" value="PTHR14503"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00468">
        <property type="entry name" value="Ribosomal_L34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01030">
        <property type="entry name" value="rpmH_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00784">
        <property type="entry name" value="RIBOSOMAL_L34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="45" mass="5433" checksum="5D6B5D38EADABCD7" modified="2016-01-20" version="1">MSKRTYQPNNRRRHKVHGFRLRMRTRAGRAILSNRRRKGRSSLAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V850</accession>
    <name>A0A0Q8V850_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">FHA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13340</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895794.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53332">
        <property type="protein sequence ID" value="KRC53332"/>
        <property type="gene ID" value="ASE19_13340"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00240">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="domain" description="FHA" evidence="4">
        <location>
            <begin position="83"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="38"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="43"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="155" mass="16622" checksum="DA057993A35123AF" modified="2016-01-20" version="1">MSELTLFLVRIAYLAILWIFVLSAISVIRSDMFGARVPTPAAPGKQPRAPKPPPSPRRGQPTHVAVVQGVNTGITADLAQAPVLIGRGNDAAIRLDDDYVSTRHARIVSSGGQWYVEDLGSTNGTYLGSQRITQPVPIGLGSQVRVGKTIVELRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8D2</accession>
    <name>A0A0Q8V8D2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13575</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894053.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53375">
        <property type="protein sequence ID" value="KRC53375"/>
        <property type="gene ID" value="ASE19_13575"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="113"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="140" mass="16106" checksum="BBB9A746D9A5AFB1" modified="2016-01-20" version="1">MFETFPRPTPTDELDQLGLILDAERRGIMLRRDLGLTKLYNLINDPTLPNTADGDIARMRGIHRELDQAVLSAYGWGDLGLEHGFHEYRKMVRWTVSPTARVEILDRLLEENHRRAASEPSSRTYDGRHETDDDAVTLFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8E6</accession>
    <name>A0A0Q8V8E6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16545</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893679.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50210">
        <property type="protein sequence ID" value="KRC50210"/>
        <property type="gene ID" value="ASE19_16545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1654295at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026881">
        <property type="entry name" value="WYL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13280">
        <property type="entry name" value="WYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="WYL" evidence="1">
        <location>
            <begin position="145"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="320" mass="35799" checksum="6D73E59EB1F0CF85" modified="2016-01-20" version="1">MPAPKSERLLNLLIMLLVQRRPIAKERIRELLYPDSRPDAFEKMFERDKDELRSLGVPVDVAAVDPLFDDEVGYRIPPEAFALPDIELTPEEAAVVGLASRVWQHATMAQATSDAVRKLSAAGIDVDLDALDIAQPLLTAEEPAFETCWLAVCERMAIEFDYQRPGTDAPRTRHVQPWGVVRYAGRWYVVGHDRERDAERVFRLSRVQGDVRLVGPPGAYEVPPDTDVRAIARRMAPPTPTEHAVLLVREGAGHGFRRSAARVEVGVPGPDEVSRWDRVELLRPAMGLADEVLAHGSDVVLLEPEPVRRRVIERLEQVVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8F5</accession>
    <name>A0A0Q8V8F5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_14170</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897023.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53480">
        <property type="protein sequence ID" value="KRC53480"/>
        <property type="gene ID" value="ASE19_14170"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1635706at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAS" evidence="2">
        <location>
            <begin position="23"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="2">
        <location>
            <begin position="153"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="3">
        <location>
            <begin position="223"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="5">
        <location>
            <begin position="308"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="4">
        <location>
            <begin position="450"/>
            <end position="705"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="289"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="719" mass="77461" checksum="11D40C008C03B068" modified="2016-01-20" version="1">MVVQADGDGAPAIGMPSGASEQEAQRLRLILEAAPSAMLMVDRSGHVVLINAQAEQLFGIGRARLLEMEVEDLIPRRSRAAHHTYRSRYLARPAARPMGAGRDLYGLRGDGTEVPIEIGLNPITIGEESFVLASVIDISERLATQAALESVGRDSLRRSILASMPCSVVATDLEGRILAANPATEVLLGYPEAELVGQPLGRLYSGPGHGGRAADLPAVATGEEREVDYRRRDGSTVAVGEVISPVIDDDGGVVTGYLAVAFDITKRVEARARVAYLASHDSLTGLPNRATLTRHLEEAIREAERKQELVALLLLDVDHFKRVNDSLGHHAGDRLLLGLADRLRHTAQDRDLVARLGGDEFVVVICGLTRIDEVTARVDRLAAALPGSVTVDNREVLATASIGCAVYPDHGRSPAHMLKHADIAMYRAKAAGRNNLRWYDESMGADGSDKLVLSTALQQALDREGELSVAYQPQVDLATGTLVGFEALARWSSPALGVVPPDRFIPVAEDSGLIAHLGAHVLRQACRDAVTLREELDLPLRMAVNVSPRQFARSTWLDELDAALADSGLDPAALELEITEGTLMDDDNDVRLVLHELKSIGTRIVVDDFGQGYSSLAYLTRFPVDKLKIDREFVRRIAATHADAAVIDAILAMSHALGMRVAAEGVETREQVDYLSARGCDEAQGFYYGEGVPLPEVARHAHLLAASAHPSPSRAEGLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8R5</accession>
    <name>A0A0Q8V8R5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09035</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895142.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53590">
        <property type="protein sequence ID" value="KRC53590"/>
        <property type="gene ID" value="ASE19_09035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="990666at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="294" mass="31943" checksum="57CBC5082F6F614F" modified="2016-01-20" version="1">MLIRDLDWIVALADTGHVTDTAAVLGVSQPTLSRALARVEDELGVRLFERVPTGIITTPDGELVVESAREVLARHQQLERELAVRRDPDRGVVRLAFLDSMATSLVPQVLRSFHELAPLVRVELTQEPGHDILRDLRSGAAELAITSTRPEGDFAWAPLQEERLVVIVGRNHRLHQRKQVALSDLADDELVTTPAGFGHRVLVDGLLADAGVAPKVSFESADLVTIEGLVAAGLGFAIVPEAQAGLSGTISLRITQARARRTIGLTWRTDRPLAPAAARLRDHVVDHAPYGTTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8T2</accession>
    <name>A0A0Q8V8T2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Resolvase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_17085</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893898.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50370">
        <property type="protein sequence ID" value="KRC50370"/>
        <property type="gene ID" value="ASE19_17085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1791095at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011109">
        <property type="entry name" value="DNA_bind_recombinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006118">
        <property type="entry name" value="Recombinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006119">
        <property type="entry name" value="Resolv_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036162">
        <property type="entry name" value="Resolvase-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07508">
        <property type="entry name" value="Recombinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00239">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00857">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53041">
        <property type="entry name" value="SSF53041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00397">
        <property type="entry name" value="RECOMBINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51736">
        <property type="entry name" value="RECOMBINASES_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0229">DNA integration</keyword>
    <keyword evidence="3" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Resolvase/invertase-type recombinase catalytic" evidence="6">
        <location>
            <begin position="9"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="active site" description="O-(5'-phospho-DNA)-serine intermediate" evidence="4 5">
        <location>
            <position position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR606118-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC50370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="223" mass="23840" checksum="B33B783757BDAFE5" modified="2016-01-20" version="1">MAKRNQSTAVIGYLRVSTEEQAMSGLGLADQKAVIDAEAMRRGWDSIEYVTDDGFSAKSLVRPGIGQALESLRAGDAGILVVSKLDRLSRSLLDFASLMATAEREGWQLVVLDMAIDTTTPSGALMANVMASFAEYERRIIGARTSAALQQLKAQGKRLGRPRVMPQEVTERIVSERQEGRTLAAIAANLNADGVPTARGGSKWYPSTVKAVIVSAELDASAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V926</accession>
    <name>A0A0Q8V926_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06725</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53788">
        <property type="protein sequence ID" value="KRC53788"/>
        <property type="gene ID" value="ASE19_06725"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="24"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="188" mass="21515" checksum="3A4B64128044607A" modified="2016-01-20" version="1">MDTRARIMEAAAELLPRFTIAKLSMEDVARATGIARQTVYKHFRSKDELVAEIIAAELRAKHGPLMRDLARHKATKRRLVELFMAQLDVGRQFPLIDPVLDPQIAPRMAELIFGIPVILEALEEIWLPILGKYADAGVLRPDLDHRQIVRWITYQQFWLITHPEVLAKNDAELEVYVSHFMLSGILQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9C3</accession>
    <name>A0A0Q8V9C3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">M20_dimer domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_07230</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895300.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53868">
        <property type="protein sequence ID" value="KRC53868"/>
        <property type="gene ID" value="ASE19_07230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="906744at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010182">
        <property type="entry name" value="ArgE/DapE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01910">
        <property type="entry name" value="DapE-ArgE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="3">
        <location>
            <begin position="207"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="441" mass="46965" checksum="4814CA2B0BC8CC76" modified="2016-01-20" version="1">MTSQEIHDRVLAAVDALKDDLVATLSEVISIPSVNPKYPGQVYDEVVGLEGRVSRLVGEIYEDAGADVEYWAVEKGRDNAVGTLRGTGGGRSLIFNGHVDVVPPGNPDRWSSGDPFSGKVDDDRVWGRGASDMKAGLVAQAFALKALHRAGVSLKGDLIIEAVVGEEVMDHECGVTSTVEHGYRADAAVVAEPSGPTNLGVIPVTPGLLWFSVTVQGKATHSSMRGQTIRAGGGGSAVGVNAIDKGMLVFQAMQRLEEEWAFTKTHPLFAPGHFTIHPGVVQGGPHGVLVPFILSEYMTIEYCIWYPPQDDPETVKAEVEAQIRAIAQTDGWLREHPPVVDWKLNWPANDPGEAAHAITAAVSSAHERVSGMTAYQGPPPVAGFCAVEDCSFLTAAGIPAISYGPGDLRVAHADDEYCLIEEVHLAARTYASLALDWCGTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9G1</accession>
    <name>A0A0Q8V9G1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07400</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895332.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53900">
        <property type="protein sequence ID" value="KRC53900"/>
        <property type="gene ID" value="ASE19_07400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1330693at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006342">
        <property type="entry name" value="FkbM_mtfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01444">
        <property type="entry name" value="fkbM_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="297" mass="32360" checksum="D415C3EB51556F98" modified="2016-01-20" version="1">MMRPADIASIAKRRLGWLIRDQFPFRPVVREVQGVTLVLPWSHRLPDYALWGPAYGQNLVELARLLAESSPLTVLDIGANVGDSTVQILNAADGKVLCIEADPAYLEFLHRNVDRDDRVAVVEALLSVDDAQAARTAVRTGGTTRFAEGGDADAMPMVSPAKLRADHPDFDQLRLVKSDTDGYDVELVPAVAEAWADTKPVLFFEYDPYLTRIAGHDPLSVWSRLEALGYRDVAVWDNGATPIGRTTTADAGAHGAAVLDAPANQRTRGRAYWDVAVVHVDDEDGRAAIEKLVPGTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9H9</accession>
    <name>A0A0Q8V9H9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06720</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895218.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53787">
        <property type="protein sequence ID" value="KRC53787"/>
        <property type="gene ID" value="ASE19_06720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="961884at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="31"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="466"/>
            <end position="539"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="550" mass="58730" checksum="BB9A1D49631706C5" modified="2016-01-20" version="1">MTAELQDAWPGRLPRTLDYPAVPVGELLRGACSRYGQRTALHHGDDGLTYTQLWEKACAFAQSLVARGIGRGDTVTLHMPNCLEYAVAYYGTLLSGATFSPANPLLPSAPLVKQLADAGTVAVVTHARSAVAARDAVNDHVRLIVVVDGEPSAGEVSFESMVAESAAEPPPVGFDVAGNLAHISYTGGTTGLSKGVELTHANVVSNVLQYVGWNHGAVPFVSVDGRVTVDQIGDSADWPVRLGTGVIINLTPWFHAMGCIGSLTVPLVAGVSIVLHDRFDPAAYLEDAERWRVSSMSGAPAMFAALIAEPTFITRDLGSVRALSSGGGPLPHDHLRLLTERFPDVVVCEGYGLTEATMGVASNPTARSATQKPGTVGLPVFDTELRLVDPTTGEPSAPGRAGEVCVRGPQVMRGYRNRPQETVETLKDGWLHTGDMGVFDSDGYLTIVDRLKDMLIYKGYNVYPREIEELLIAQPSVRAAAVVGRPDAEVGERPVAFVVPNGEFDAEEVTAAVNEQLLPYKRIREVVVVDQIPVSAAGKVLKRDLRDQLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9L4</accession>
    <name>A0A0Q8V9L4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06940</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53819">
        <property type="protein sequence ID" value="KRC53819"/>
        <property type="gene ID" value="ASE19_06940"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="60" mass="6602" checksum="27FF1A808C97CCD9" modified="2016-01-20" version="1">MPCSFFEQLCVGAEIGRLEEDVQVMLRLQWQVREGALVIAVEPHELLALVEVVGVGEAGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9T8</accession>
    <name>A0A0Q8V9T8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08010</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895442.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54010">
        <property type="protein sequence ID" value="KRC54010"/>
        <property type="gene ID" value="ASE19_08010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1917261at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="16"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="111"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="197" mass="21443" checksum="F78E45920697E300" modified="2016-01-20" version="1">MTSPVGNRRRQRSTRLVVAALLIVGSAVIVVATALTGSWLFVTVAALTAVVLGAVATKITHSELMDSREEAARDRAQQARAYAGLTEARTAENVEFAADMTGKLARRDATISRLEKRLGDAASELADARREVSEFRDRADETQRELERLTGRLADADERAQQAVVRVAELEAELDVLTSELQAERAAARAWQKGRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA44</accession>
    <name>A0A0Q8VA44_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">NADH-quinone oxidoreductase subunit K</fullName>
            <ecNumber evidence="5">7.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">NADH dehydrogenase I subunit K</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">NDH-1 subunit K</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nuoK</name>
        <name evidence="6" type="ORF">ASE19_10010</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5">NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the complex I subunit 4L family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_028657193.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52745">
        <property type="protein sequence ID" value="KRC52745"/>
        <property type="gene ID" value="ASE19_10010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2081663at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050136">
        <property type="term" value="F:NADH dehydrogenase (quinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01456">
        <property type="entry name" value="NDH1_NuoK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001133">
        <property type="entry name" value="NADH_UbQ_OxRdtase_chain4L/K"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039428">
        <property type="entry name" value="NUOK/Mnh_C1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11434">
        <property type="entry name" value="PTHR11434"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00420">
        <property type="entry name" value="Oxidored_q2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-0874">Quinone</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <keyword evidence="6" id="KW-0830">Ubiquinone</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="26"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="58"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="97" mass="10482" checksum="D4B5DE6041D6D669" modified="2016-01-20" version="1">MTEYVVLSAILFTIGSIGVLTRRNAIVVFMCVELMLNACNLAFVAFAHQHGNLDGQVAAFFVMVVAAAEVVVGLAIIMTIFRTRRSASVDDASLLKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAS9</accession>
    <name>A0A0Q8VAS9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16455</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50359">
        <property type="protein sequence ID" value="KRC50359"/>
        <property type="gene ID" value="ASE19_16455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="538961at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06355">
        <property type="entry name" value="PBP1_FmdD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017777">
        <property type="entry name" value="ABC_urea-bd_UrtA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03407">
        <property type="entry name" value="urea_ABC_UrtA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359874" evidence="1">
        <location>
            <begin position="29"/>
            <end position="407"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="407" mass="43475" checksum="CC0061FDBBB5F500" modified="2016-01-20" version="1">MATGTALALTTALSLSACGGSKSGESSAAESCVDTSGDTIKLGFLNSTSGAMAISEQTVRDSLAMAAEEINASGGILGKKIEPVVEDGASDPAIFAEKIEKLLTGDCVAAVFGGWTSASRKAMLPVVEADNGLLFYPVQYEGLEASKNIYYSGATTNQQIIPAMDFLKSQGVKTLFLAGSDYVFPRTANKIIKQYAKELGIKIVGEEYVPLDDDDWTTQVAKIADAKPDFVFNTINGSSNVGFIKAYYEQGLSPATSPIISVSIAEEEAPAMGKDVTGQYAAWNYFQSVKSPANETFIKAFQAKYGADRPTSDPMEAAYTSLYLYKALVEKADSFDVDKINDSADGVSFDAPEGTVTIDGENHHIAKTGLIGRINKDNQFDVVWSSEEPIEPDPFLKGYSWWDPSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBC5</accession>
    <name>A0A0Q8VBC5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">BTAD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11205</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52963">
        <property type="protein sequence ID" value="KRC52963"/>
        <property type="gene ID" value="ASE19_11205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005158">
        <property type="entry name" value="BTAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03704">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01043">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BTAD" evidence="1">
        <location>
            <begin position="577"/>
            <end position="713"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="720" mass="76020" checksum="1C5587D0D7208529" modified="2016-01-20" version="1">MAPYHGRVSVPLLGLGAESPVALVHSPRVAADALLTELVEAADPLASARRRAPELTALLLREHWTALLDRLVPAPEPVPGWLAWRATYGLHHLGHLRDAAAVAERADPAADPADRARLTAIRASIAWNRGDHAAARGYAEEAGALDAEANGAAQGFVDVALALLSAADGDRDANFWYYERAKAWAQRTGDDLTLERVLNNLASRSLEEGAPEAAVALAIAGQQVNLRTGHQSGLALLRHNLAEALMTLGRLDEALASAHQARAFYASAGSPNSGSSWQLVGDIQATLGLATQAAASYRHAVAAAEIEGDAQTLVPSLSGLALVTALEDPSGAAALVARVEREPIAVRGAASLTAAAWVHLCTGAPDAARAQAELAVVEAGRVNDLTRTAEALELLCLLDGTSADDPRLHEAGQLRQRIGDPIRVAVHRLVTAHLRRDPLERRLAVQQLRAHGVVADASRIAGQLHVVGAGTTAAPVRVHSLGGFVVLRDGIPIGSGEWPSRKAHEVLRLIAAHGSAGLTRAQLAQLLWPDARDVSNRLSVALSHLRTALDPDRRHPADHFLRSDGGRLVLVAEHVEHDVEEFRSAARSALGQVPNSPAGPAGEHALAALEAAASLYTGPFAEGEDAEWADELRQELDAVAREVVRAIAVLHAGRGTPAAAVPWLTRLLSGDPYDEPDHLALIAALRDARRFGEAKLAHSRYQERMTELGVDAVGWDAVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC52</accession>
    <name>A0A0Q8VC52_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13815</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897085.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53417">
        <property type="protein sequence ID" value="KRC53417"/>
        <property type="gene ID" value="ASE19_13815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1747923at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359900" evidence="2">
        <location>
            <begin position="29"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="214" mass="21881" checksum="C15B3D36045D07F5" modified="2016-01-20" version="1">MRLRRLAPAAVLLLVPVLAACGDDKEPAAGTDDPTSEAPTTSDAPTTPASTPAATETTSAPTEEPPAAVAACDLITAGDVGKVMGVSFTAGSPDTEDEKEGAVSWTASECSFEAKDLVEVSVRVAEPAAFASGKVQCPMPAEGDGSVEPRDVAGATEAWWKISPPPNFEGIVRACSTDALVEVDLDYEDGVDYDGDPGEQASQLAAFVLANLQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC90</accession>
    <name>A0A0Q8VC90_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Membrane protein insertase YidC</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Foldase YidC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Membrane integrase YidC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Membrane protein YidC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">ASE19_14010</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <reference evidence="16 17" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Interacts with the Sec translocase complex via SecD. Specifically interacts with transmembrane segments of nascent integral membrane proteins during membrane integration.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 13">Membrane</location>
            <topology evidence="1 13">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the OXA1/ALB3/YidC family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897054.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53449">
        <property type="protein sequence ID" value="KRC53449"/>
        <property type="gene ID" value="ASE19_14010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="524437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032977">
        <property type="term" value="F:membrane insertase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028055">
        <property type="entry name" value="Membr_insert_YidC/Oxa1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001708">
        <property type="entry name" value="YidC/ALB3/OXA1/COX18"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12428">
        <property type="entry name" value="PTHR12428"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02096">
        <property type="entry name" value="60KD_IMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03592">
        <property type="entry name" value="yidC_oxa1_cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 15" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 13 15" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 15" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="41"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="108"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="177"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="221"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="263"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="14">
        <location>
            <begin position="272"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="14">
        <location>
            <begin position="294"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00026028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00033245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00033342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU003945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KRC53449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="348" mass="38451" checksum="21410F3396C6C2A7" modified="2016-01-20" version="1">MGIIGDIGHFIMVPLYYIISAVLLGWHKLFTTLGLDGDGGLSWALSIIGLTLMIRAALIPLFVKQIKSSRNMQLLQPKVKELQKKYGHDRQKLAEETMKLYKDAGTNPFASCLPILLQMPIFFALFRLLSSAAKSDKAHGFLTKEKAHQFGESKIFGTLPINGNFWASRTWGDDPHAGVMIVAAFLVLAMTATTFTTQRQLMAKNMPAEAMSGPYAQQQKMLLYILPVAFGLGGVAFPIGVLLYWTTSNLWTMGQQFYVIRNNPAPGTPAFKAKQDRDKEKARRHGHAAEEEPSAGTTTVTERRPAARQQPKKQTRAQRAKSGSKTNPSSPGDRAEDGETEPTEGEER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCE6</accession>
    <name>A0A0Q8VCE6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05105</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54844">
        <property type="protein sequence ID" value="KRC54844"/>
        <property type="gene ID" value="ASE19_05105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1247435at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359898" evidence="1">
        <location>
            <begin position="28"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="397" mass="41380" checksum="D0E77361A6F62999" modified="2016-01-20" version="1">MIRALAATLAAVGATLVAPLTASPAHADGPGAGFPWVVSVGDSYISGEAGRWAGSSNSSSARADALGSTAYYDNASGTGEAIDRCHRSKSAEIHIGGGVGSLNLACSGAKTATATGSEFKPGLDFYSGTEGVGQAGALQTFAGTHNVRMVVVSIGGNDFNFAGVVQQCVQDFLLSPSWWKDYCNDDSSVTSNFTSGNVATVKSRIAGALTNLRTAMRNAGYADTQWTMLVQTYPSPIPNTLRYSQSGYTRQNTGGCGFWDADAAWANNTALPTINNTVTGAIGQAGITNSKVLNLSSTFTGRRLCESGVGLYEEVGIANWTSAGAVDRTEWVNQIRTVTTAGDSPYYIQESLHPNYWGQLAVRSCVRQAYNGGTPKGGACVRSATGLLNGEPRMTLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCG9</accession>
    <name>A0A0Q8VCG9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amino acid-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04865</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894277.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54804">
        <property type="protein sequence ID" value="KRC54804"/>
        <property type="gene ID" value="ASE19_04865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1859752at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT" evidence="1">
        <location>
            <begin position="94"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="174" mass="17412" checksum="33B39B1551F11B54" modified="2016-01-20" version="1">MSNDLYAVTVLGHDRPGIIAETTAGLAGLGLNIEDSTMTLLRGHFAMMLLCRGAVEGSAVESALAPLAVGGDLDVSVRPVAEGAASGAGGTAWVLTVHGGDRPGIVSEVVGQVASAGGNITDLTTRLAGELYLLVAELDLPVGSDVAAVEAGIRAAAERVGVTATLRPVEADEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCX7</accession>
    <name>A0A0Q8VCX7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplD</name>
        <name evidence="7" type="ORF">ASE19_06580</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Forms part of the polypeptide exit tunnel.</text>
    </comment>
    <comment type="function">
        <text evidence="5">One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894496.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55093">
        <property type="protein sequence ID" value="KRC55093"/>
        <property type="gene ID" value="ASE19_06580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1572673at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01328_B">
        <property type="entry name" value="Ribosomal_L4_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002136">
        <property type="entry name" value="Ribosomal_L4/L1e"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023574">
        <property type="entry name" value="Ribosomal_L4_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013005">
        <property type="entry name" value="Ribosomal_uL4/L1e"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10746">
        <property type="entry name" value="PTHR10746"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00573">
        <property type="entry name" value="Ribosomal_L4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52166">
        <property type="entry name" value="SSF52166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03953">
        <property type="entry name" value="rplD_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="33"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="39"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00019302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="22145" checksum="7277AAF6F51BCF45" modified="2016-01-20" version="1">MAKTVSVDFPAAIFDVEVSVPLIHQVVVAQQAAARQGTHATKRRGEVRGGGKKPYKQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRGALTDRARSERIHVIEGLVAGDKPSTKAALASLFELTTRRKFLVVLERTDSVTWLSLRNAPEVHIVAVDQLNTYDVLASDDVVFSKAAFDLFVAGGNTGAQEESN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDE7</accession>
    <name>A0A0Q8VDE7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_15300</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896513.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51447">
        <property type="protein sequence ID" value="KRC51447"/>
        <property type="gene ID" value="ASE19_15300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1977328at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025645">
        <property type="entry name" value="DUF4349"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14257">
        <property type="entry name" value="DUF4349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359944" evidence="3">
        <location>
            <begin position="34"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="290"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="33"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC51447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="332" mass="34466" checksum="85C9FC1543DE6CA8" modified="2016-01-20" version="1">MSRRTDMHPTRTRLALSLAGVATLAALTGCSGGASDGDSAAGVPAADEKAAGMGGPAVEAPDALNSTQRNAYAADGADTAAGLADTSDAVDPAKTADDIEPGRAVISTGSVSLESDDVGRTRFDVRKVLDRHRGTISEQETTTGDGGEVATARLVARVPSKEFGDALDDLEGVATLLSSNESGQDVTTKVIDVAARVRAQRASVARIEALLDRATDLQEVISIERQLATRQAELDSLVSRQKYLADQTAMSTISISIEQPAEEAKHDEEKAGFLGGLEDGWDSFVAGGAAALAVVGFLVPWLILVAVLGLPLWLALRRRAGRRPSTPTPATP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDF5</accession>
    <name>A0A0Q8VDF5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Amino acid transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_06270</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895130.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55160">
        <property type="protein sequence ID" value="KRC55160"/>
        <property type="gene ID" value="ASE19_06270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1953934at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="71"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="149"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="185"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="204" mass="20960" checksum="0C853C2722DE9122" modified="2016-01-20" version="1">MLAPTVAGLLTSLSLIVAIGAQNAFVLRQGLRRAHIGPVVLVCALSDAVLIAAGVAGVGTLVDRADGVIDVVRWLGVAFLLGYAASSVRRAFRPESLDPASAPGGETRGRVVGRTLALTWLNPHVYLDTVLLIGSVAAVHDGGATAGRWWFGAGAALGSVLWFTGIGFGARLLAPLLARPRAWQVLELAVAATMVVVAVKLALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDK1</accession>
    <name>A0A0Q8VDK1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">SseC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07300</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895313.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53881">
        <property type="protein sequence ID" value="KRC53881"/>
        <property type="gene ID" value="ASE19_07300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1774182at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010814">
        <property type="entry name" value="DUF1416"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07210">
        <property type="entry name" value="DUF1416"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="102" mass="10452" checksum="3A2B87FDEF1B601B" modified="2016-01-20" version="1">MCGATVGGLSTEGINVTKEAVIQGQVVRGSGDDATPVSGAYVRLLDASGEFTAEVPTSATGHFRFFAGDGQWTLRTLAPKADPVDRAVQAQTGSVAEVLISI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDL5</accession>
    <name>A0A0Q8VDL5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AP_endonuc_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10310</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894733.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52800">
        <property type="protein sequence ID" value="KRC52800"/>
        <property type="gene ID" value="ASE19_10310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1007505at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="27"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="269" mass="29753" checksum="512A22947264A6F5" modified="2016-01-20" version="1">MTRMTRPRVGLSTSSVYPESTAHAFGYAARVGYEAVEVMVGIDALSQEHDAVRELSEHHGLPVSAIHAPCLLFTQRVWGVEPWGKLERSAEMAREVGAGVVVVHPPFRWQKEYARDFVNGIAALEESSGIAFAVENMYPWRASRRKLEMYLPGWDPSDEPYANTTIDLSHASIARSDPVAMAERLGPRLRHIHLTDGTDSAKDEHLVPGRGDVGAAAFLRHLAQTGFAGEVVLEINTRRCTSREEREADLRESLEFAIEHLTSAPVAES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDV3</accession>
    <name>A0A0Q8VDV3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07750</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895392.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53961">
        <property type="protein sequence ID" value="KRC53961"/>
        <property type="gene ID" value="ASE19_07750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="720199at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="441" mass="46904" checksum="8F29C4B7FD5914D0" modified="2016-01-20" version="1">MLPRFEIVARHRPVALVGQRDAFPLIAPFAAVEADLTSPDDPAELALEAADGSRLAARLGGGRASLSVVAAGREHVVRSRRHGRVRDANRLGLTLTGRHLAVLTYADDAWTLRGRVDLADLPGTPDPTDTAWLASVRPDATGAVAGVIAGGFGQLGLRDVRVVSHADGSPYREGDEVLLTATSAGPGFFDTAHTSVWALGADNAVTHRADLFFARPDRPGVHGDHATHLLRDGGRWLVATSTWSDFPADRSKRAGSRVSITLAESDADLTRGRHLLPTRALELPTDGPSVGVWDPHLAREDDGSWLVGYVSARRFFDFHPVLATGPTLDALTLRAAAGDRTATEGTTLARLGGTWRVLASDGRDNPKAVAARFPVLDLDLRDLGTVDAPYPTNIPWPTLVAPDPAVAGDRWRLVTFNGRPSGGALAGYGTHGDLVVLQETR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE06</accession>
    <name>A0A0Q8VE06_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">SGNH hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10815</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894825.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52893">
        <property type="protein sequence ID" value="KRC52893"/>
        <property type="gene ID" value="ASE19_10815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1247435at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGNH_hydro" evidence="2">
        <location>
            <begin position="8"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="238"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="257" mass="27328" checksum="64040AF210E0DDF0" modified="2016-01-20" version="1">MTFSKYVALGDSFTEGVGDPDPARPNGLRGWADRTAEALAADARAAGVDFGYANLAIRGRKLPAIIDEQVDAGLALGPDLVTIHGGGNDVLRPKVDLDDLAASYDEAIGRIAGSGAHVVVFTIADTGNSGMMKVIRGRTAIFNEWVREIAEKHGATLVDMWRMRGWTVAEVMDEDRLHLNAVGHQSIAIAALDALGVAHDLQPLPPVVVPVLSAREQRAADLAWARSHLAPWVQRRVTGRSSGDGVEPKRPALAPIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGC2</accession>
    <name>A0A0Q8VGC2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MPAB_Lcp_cat domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14220</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897014.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53489">
        <property type="protein sequence ID" value="KRC53489"/>
        <property type="gene ID" value="ASE19_14220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1395053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018713">
        <property type="entry name" value="MPAB/Lcp_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09995">
        <property type="entry name" value="MPAB_Lcp_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MPAB_Lcp_cat" evidence="2">
        <location>
            <begin position="25"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="330"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="352" mass="39176" checksum="8ADFD5D94C1F13FE" modified="2016-01-20" version="1">MAKNKRSSITPAEDHGFFGPGSVTWKVWTYPTSLTLGFSRAVVVEELDPNLVASVDRTQDIYKRPKTRYDRTIRYFALIAIGESRTAAQAADVLVKVHSKAIGTEPYAGGRYDANDPDSQLWILVTGWHSVLKAYEMYGPGRLSEAEEAAYWAECARAAEFQTCDPADVPRNRAELHAYYARMRPVMSGSPIAQRAMKHLMDVNQLIDVPRVLAPAQWVVAFFFRAGVIATLPHWMREMGDVRQPRAVDLLVRPVLRATFLSLTVSKRLQLRLLGLLSPSTIPVAAPVLLGVPPVRDEVLTPAEARERYGYDKPAEAHLAWRAKQHDKVFGRGEDPSDAGLIESESVLGRLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGP2</accession>
    <name>A0A0Q8VGP2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">4HBT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02020</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892651.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56634">
        <property type="protein sequence ID" value="KRC56634"/>
        <property type="gene ID" value="ASE19_02020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2060970at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="47"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="141" mass="14769" checksum="7AAD0DCEE1F43F87" modified="2016-01-20" version="1">MTSNEEIADFLRANMGALNERMGVELVEISPERVVATMPVEGNTQPYGLLHGGASVVLAETLGSVAAALNAGPGRFAVGTDINATHHRSATKGLVTGVATPLHLGRTMASFEIAITDEDGRRVCTSRITCALIERDPTPKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGS5</accession>
    <name>A0A0Q8VGS5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glucose-6-phosphate 1-dehydrogenase</fullName>
            <shortName evidence="5">G6PD</shortName>
            <ecNumber evidence="5">1.1.1.49</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">zwf</name>
        <name evidence="9" type="ORF">ASE19_11340</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the oxidation of glucose 6-phosphate to 6-phosphogluconolactone.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>D-glucose 6-phosphate + NADP(+) = 6-phospho-D-glucono-1,5-lactone + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:15841"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57955"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:61548"/>
            <dbReference type="EC" id="1.1.1.49"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the glucose-6-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.49" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53633">
        <property type="protein sequence ID" value="KRC53633"/>
        <property type="gene ID" value="ASE19_11340"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004345">
        <property type="term" value="F:glucose-6-phosphate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00966">
        <property type="entry name" value="G6PD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001282">
        <property type="entry name" value="G6P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019796">
        <property type="entry name" value="G6P_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022675">
        <property type="entry name" value="G6P_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022674">
        <property type="entry name" value="G6P_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23429">
        <property type="entry name" value="PTHR23429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02781">
        <property type="entry name" value="G6PD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00479">
        <property type="entry name" value="G6PD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000110">
        <property type="entry name" value="G6PD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00079">
        <property type="entry name" value="G6PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00871">
        <property type="entry name" value="zwf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00069">
        <property type="entry name" value="G6P_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1 5" id="KW-0313">Glucose metabolism</keyword>
    <keyword evidence="2 5" id="KW-0521">NADP</keyword>
    <keyword evidence="3 5 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G6PD_N" evidence="7">
        <location>
            <begin position="13"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="domain" description="G6PD_C" evidence="8">
        <location>
            <begin position="198"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="249"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="157"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="244"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="337"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="342"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="489" mass="55096" checksum="5530073DDBCF045B" modified="2016-01-20" version="1">MPDLALPACDFTVFGGTGDLALRKLLPGLYERERQRQLHPDTRIVGVSRHDLDDAAYRDLVTHALFEHVPEDHLEAGAVHRLTSRLHHLALDARSGEDWHRLHGLLKDHPDRLARAEAHDSTRVFYLAVASELFGPICDRLDDLGLVDAESRVVLEKPIGSDLASSRVVNDAVGRVFEERQIYRIDHYLGKESVQNLLVTRFANTFLEPIWNSRWVDHVQITVSETLGVGGRGGYYDQAGAMRDMVQNHLLQMLCLVAMEPPTYVGGDPVRDEKLKVLRALTPLTGADVDRFTVRGQYTSYGEEIGHPSTTETFVALRAEVQNWRWAGVPFYLRTGKRLARKESTIEIVFKEPPHAMFPHSEGVTTPNRLTVRMQPDEGMQLHLTAKHPGPGGIRLHPASLDLSYADAFDERSPDAYERLLMDVMRGIPTLFMRRDEVEAAWAWVEPILDRWDEAGVEPVRYHPGTPGPAAATKLITREGRTWQESTDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH51</accession>
    <name>A0A0Q8VH51_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">C-5 sterol desaturase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04905</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894272.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54809">
        <property type="protein sequence ID" value="KRC54809"/>
        <property type="gene ID" value="ASE19_04905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2048011at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006694">
        <property type="entry name" value="Fatty_acid_hydroxylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04116">
        <property type="entry name" value="FA_hydroxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="Fatty acid hydroxylase" evidence="2">
        <location>
            <begin position="97"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="298" mass="34411" checksum="C810DDD85ACD2B2B" modified="2016-01-20" version="1">MHDLLDPMKNPVTYAIPFFLLTILIELAALRWLDHEDDPKPPTGYLGKDTRTSLTMGLVSLVFTLAFKVGSFLVYSLVFVHFAPFHLPTDAWWYWPAVVVAVDLGFYGSHRFVHRVNVGWAAHQAHHSSEYMNFGTALRQKWNPWFEFFFWLPLPFLGFSPWTIYVAFGVNLVFQFFVHTETIGKLPRPIELVFNTPSHHRVHHGSDPEYLDKNYAGMLIIWDRMFGTFQPELHRPTYGLTKKVETYNLLALQYGDYAQITRNVRSATSWRERAGYLFGPPGWEPTRDPARLSAAGAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHG8</accession>
    <name>A0A0Q8VHG8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09515</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894601.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52663">
        <property type="protein sequence ID" value="KRC52663"/>
        <property type="gene ID" value="ASE19_09515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="872193at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013751">
        <property type="entry name" value="ACP_syn_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013747">
        <property type="entry name" value="ACP_syn_III_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08545">
        <property type="entry name" value="ACP_syn_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08541">
        <property type="entry name" value="ACP_syn_III_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACP_syn_III" evidence="2">
        <location>
            <begin position="116"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="domain" description="ACP_syn_III_C" evidence="1">
        <location>
            <begin position="247"/>
            <end position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="335" mass="34684" checksum="007BF7C4A86AEBA7" modified="2016-01-20" version="1">MPAQSPARGPRALRILGTGAAVPDEALTSAELDRRLGLPAGTVEEKTGVRVRYVERGSAAELGARAARKALAAAGIDLDDVDLVIGASATPDQPLPCNAALMHEELAPGRPIPAWDVNASCMSFLVALDLAATLVDAGRHERILIVSSDLASVGLDWSDLGASGIFGDGAAAAVVGHAGTGGSAVLSTGFQTHSEGAHSCEIRGGGSRYAPDRVEGEYADWGRFRMDGGAVFRLAFRHLPAFVDGLLDEAGVTMDELPVVVPHQASHHGLEWVRQQFGVGERLVDIYADHGNQVAASLPSALHAAIESGRLRRGDRALLLGTGAGISLGGAVLCY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHZ3</accession>
    <name>A0A0Q8VHZ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06125</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894057.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55017">
        <property type="protein sequence ID" value="KRC55017"/>
        <property type="gene ID" value="ASE19_06125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1843957at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="64" mass="7441" checksum="9F963324CFEB4711" modified="2016-01-20" version="1">MTRHSHRAKTHLGYEVHQLGPDRWIWRTPHGLHRLVTGEGTRSITQVDYHTLRIELGGKYVLTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIH8</accession>
    <name>A0A0Q8VIH8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23875</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893999.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57365">
        <property type="protein sequence ID" value="KRC57365"/>
        <property type="gene ID" value="ASE19_23875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="665798at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="2">
        <location>
            <begin position="106"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="34"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="516" mass="54069" checksum="901679B3A611DFD7" modified="2016-01-20" version="1">MSKKLIIAVSVIWALVIAGGLGIGVVLLTDGDDEPDDAPDKGADASQDVEPGRSTLDDYYGQELTWSACGDDECASLDVPVSYQDLSLGTIKLAVERAGATGKRVGSLVVNPGGPGAGGTYLAEQADSYFASDLRAAFDIVGFDPRGTGDSSPVDCLTDDELDAYIAADPDPDTPDEVEQGVENAEEFWSGCEAKSPAMGAHVSTVEAARDMDVLRAALGQDKLDYLGFSYGTRLGATYAELYPDKVGRLVLDGAIDPSLTSRDGALSQAAGFETALRSYVKDCVDGGSCFLGSTVDDGIAKIKDLIDSIDEKPLPTTDSEGRDLTVGLAFYGLITPLYSRDNWPALDQGLTQALDGDGSTLLLLADLYGSREDGKYTDNSLEAISVINCLDDPWSISADEVPGQFADFEKASPTFGKVFAWGLTACHGDPFTSTDEPDLVIDGAGAAPIVVLGTTRDPATPYQEAVAMAKQLESGVLVSRDGDGHTAYNKGNSCIDDAVHAYLIDGVVPKDGLSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIP8</accession>
    <name>A0A0Q8VIP8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4395 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07210</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895625.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54193">
        <property type="protein sequence ID" value="KRC54193"/>
        <property type="gene ID" value="ASE19_07210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1892403at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025508">
        <property type="entry name" value="DUF4395"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14340">
        <property type="entry name" value="DUF4395"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4395" evidence="2">
        <location>
            <begin position="7"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="152" mass="15603" checksum="B6786C71638236BA" modified="2016-01-20" version="1">MMSTPGIDPRGPRFTAAVTFVIFAVALLLSDARPGVAAVLTGVQAVFFAIGAGLGVQKTPTGVLFRSVVRPRLTPPDHLEDPAPPRFAQAVGLVFAVVATIGFATGAVLLGQVFAGFAIVAAFLNAVFAFCLGCEMYLLGLRLSPKSPTSGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ25</accession>
    <name>A0A0Q8VJ25_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Recombinase RecQ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_24045</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894030.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57396">
        <property type="protein sequence ID" value="KRC57396"/>
        <property type="gene ID" value="ASE19_24045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="54580at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004589">
        <property type="entry name" value="DNA_helicase_ATP-dep_RecQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00614">
        <property type="entry name" value="recQ_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="5">
        <location>
            <begin position="38"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="6">
        <location>
            <begin position="236"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC57396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="712" mass="76589" checksum="C21F5F00D21FE5CB" modified="2016-01-20" version="1">MTSDAATTATRDRAEEHLRALVGNPDARLYDDQWAAISALVVDRQRALVVQRTGWGKSAVYFIATLLLREQGSGPTVIISPLLALMRNQIAAAERAGIRAVTVNSTNVDQWDQLHAEIRDGQVDVLLVSPERLNNPGFRDEVLPRLAATCGLLVVDEAHCISDWGHDFRPDYRRIRTLLQDLPAGIPVLATTATANQRVTDDVAEQLGADTLVLRGSLDRASLRLGVVRLTTAEQRLAWLADHLAEQPGSGIVYCLTVAATQEVADYLRSRGHQVAAYSGQTEQTERLALEQALVDGEVKALVATSALGMGFDASLGFVVNLGAPNSPVAYYQQVGRAGRGANLPPEGASVVLLPALEDRDIWAYFASLAFPREELVRETLAVLAEEGRALSTAAIEPRVDLSRNRLETMLKVLDVDGAVRRVRGGWEATGRPWDYDAERYARVSAARDAEQRAMLDYLTTDECRMLYLRRQLDDPEVLADPGWRCGRCDNCGGLDLSTEVSAAAVEEAADRISRPGVPIEPRKLWPTGLAAIGIGLSGKIKQPAEEGRAIARLTDLGHGAALRGLFALDPDGRATDGPVPDPLARAMVAMLQDWQPQVHAIVVVESERRPQLTTDLASGLSRFLGVPVAGRWAVVDPGVGPDRGATNSAQRVAAVSRRSALRLDAPDAVRDARVLLVDDRLVTGWTLTLAAAALHDAGAAGVVPLVLGVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK85</accession>
    <name>A0A0Q8VK85_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14425</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896976.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53527">
        <property type="protein sequence ID" value="KRC53527"/>
        <property type="gene ID" value="ASE19_14425"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360123" evidence="1">
        <location>
            <begin position="38"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="145" mass="16101" checksum="9D6B3F17B6851880" modified="2016-01-20" version="1">MNTTTRRNLRSRKIVLAPLALLMAVISILGMASPSQAAVQTYASSTRNGLWHSGNVNVLTAGKQPYTQIYFNDRSGDNYCTQLKVRVHQSNGWVGTFTQGSVCGGRTGTLTNYYTPYTGTYLTEIEVWTVRADGNYPSYVWSFRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKE3</accession>
    <name>A0A0Q8VKE3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP-dependent DNA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04620</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894317.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54765">
        <property type="protein sequence ID" value="KRC54765"/>
        <property type="gene ID" value="ASE19_04620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2061599at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04863">
        <property type="entry name" value="MtLigD_Pol_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014145">
        <property type="entry name" value="LigD_pol_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033649">
        <property type="entry name" value="MtLigD_Pol-like"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02778">
        <property type="entry name" value="ligD_pol"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="305" mass="32964" checksum="E9CAAD975F484652" modified="2016-01-20" version="1">MPKKPEHPQTEVHVDVEGRTLRLTNLEKVLYPATGTTKGEVLDYYARVAPVLLPHLAGRPVTRIRWPHGVGDKSFFEKNAPAGTPSWVRTADVPTTGSRGTSRHGDTLRFPIIDQLATLVWAVNLAALELHVHQWTVDDDGEPVGADRIVIDLDPGEGAGLHECCGVALLARDALAERGLDALPVTSGSKGLHLYAPLAEPLPPDETSALAKEIAEELQAAHGHLVTATMTKARRRGKVFLDWSQNAGSKTTVAPYSLRGTPRPQVATPVTWDEVAEGAEDPLGLDQFSMAEALARVEEWGDLFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKT9</accession>
    <name>A0A0Q8VKT9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05135</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894232.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54849">
        <property type="protein sequence ID" value="KRC54849"/>
        <property type="gene ID" value="ASE19_05135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013653">
        <property type="entry name" value="FR47"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08445">
        <property type="entry name" value="FR47"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="151"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="297" mass="32151" checksum="77EB7A196E6374FE" modified="2016-01-20" version="1">MGSTHDVWFTEDAGTFLDRAGEYLAADPVVGTVLSTMARRTAEHGPPAGMPDCWFALVTGAAGEIVGAAMRTAPFEPWPPYLMGMEDGAAVALADAALARGIAIDGTNGLRPATDVFSARVAERTGRQTRVHLHHRLFELGTLVPPRPVRGRLREVRSEEARLALAWIHQFFRDADEQAGREAGHLNEGASFGIGDVLRKLDEGVLWFWVDDEDRPVHLTGANPPAYGVTRIGPVYTPKDERGRGWAGAAVAEVSRRIQADGGRAILFTDQANPTSNALYQGLGYEPVVDTVQLDIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLP9</accession>
    <name>A0A0Q8VLP9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 8 11">50S ribosomal protein L22</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rplV</name>
        <name evidence="12" type="ORF">ASE19_06560</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="7">This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="8 11">This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8 10">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8 9">Belongs to the universal ribosomal protein uL22 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894493.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55089">
        <property type="protein sequence ID" value="KRC55089"/>
        <property type="gene ID" value="ASE19_06560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1666043at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00336">
        <property type="entry name" value="Ribosomal_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01331_B">
        <property type="entry name" value="Ribosomal_L22_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001063">
        <property type="entry name" value="Ribosomal_L22"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018260">
        <property type="entry name" value="Ribosomal_L22/L17_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036394">
        <property type="entry name" value="Ribosomal_L22/L17_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005727">
        <property type="entry name" value="Ribosomal_L22_bac/chlpt-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13501">
        <property type="entry name" value="PTHR13501"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00237">
        <property type="entry name" value="Ribosomal_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54843">
        <property type="entry name" value="SSF54843"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01044">
        <property type="entry name" value="rplV_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00464">
        <property type="entry name" value="RIBOSOMAL_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 9" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 8 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 8 10" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 8 10" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009451"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00025084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC55089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="139" mass="14957" checksum="EFFA3999BBA956F9" modified="2016-01-20" version="1">MSTTERHRTSARRESILGDEPGAFATARFVRITPMKARRVVDLVRGLPADEALTLLQFAPQSASETVAKVLASAVANAGTTEGLATGDLVVSIARVDEGPTMKRWRPRAQGRATRINKRTSHITIAVQPADVVAKKGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLV3</accession>
    <name>A0A0Q8VLV3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AraC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04285</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894374.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54706">
        <property type="protein sequence ID" value="KRC54706"/>
        <property type="gene ID" value="ASE19_04285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1459004at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="213"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="317" mass="34538" checksum="1ADFB4CE4FD12DCB" modified="2016-01-20" version="1">MRIAVHAFDGITMFHLAAPLLVFGEVDRQGLATGWKPTVWSAEGRGIRTAEGPLIENLAGPEAIADADLVIFPSWPSDLPPLPDHLAQEVRKAQARGSRVAGLCLGAFPVVDSGLLDGRDAVTHWGAIEQLAERRRAVRVSSSALYVDHGDVLTSAGTASAIDACLHIVRTHLGSAAATAVARNLVVAPHRDGDQAQYVARPMAEPGGVGDLGPTIDWALAKLDQRLLVDDLADHARMSRRNFNRRFSEVTGTTPARWVLTQRLDEARRLLEATEWPVSRIAERCGFSSVVTFRQNFVAAYSTTPTSYRQRFSLRHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMS1</accession>
    <name>A0A0Q8VMS1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glycine/betaine ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_03720</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892938.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56921">
        <property type="protein sequence ID" value="KRC56921"/>
        <property type="gene ID" value="ASE19_03720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="770506at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007210">
        <property type="entry name" value="ABC_Gly_betaine_transp_sub-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04069">
        <property type="entry name" value="OpuAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360184" evidence="2">
        <location>
            <begin position="30"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="domain" description="OpuAC" evidence="3">
        <location>
            <begin position="42"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="305" mass="32221" checksum="CAFD4E2F048B5664" modified="2016-01-20" version="1">MTSLKWTSRLGLVLATTSVLALSACGGSDDDPLASDGGDGGTVVIGSQDYYSNEIIAEIYAQALEADDVKVEREFRIGQREVYLPEIKNGSIDLFPEYTGPLLIALDPKATATKPDEVLTGLEAALPSGLRALTPAPATDQDSYVVTKEYADKWGLTTIDDLAKVTDPIVFGANSEAESRPNGPKGLKKTYGVDVTFTPIEDSGGPLTVKALKDGDIQIGIIYTADPSIAKNDLVTLEDTKGLFLASAVVPIASDDVSDEAEKTIDEVSAALTSDDLIALNARSVDDKLPAATIAKDWLDEKGLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMW7</accession>
    <name>A0A0Q8VMW7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">RDD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_03890</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892970.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56953">
        <property type="protein sequence ID" value="KRC56953"/>
        <property type="gene ID" value="ASE19_03890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2059720at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010432">
        <property type="entry name" value="RDD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06271">
        <property type="entry name" value="RDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="58"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="103"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="RDD" evidence="6">
        <location>
            <begin position="10"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF06271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="167" mass="17125" checksum="8CE3193DECA72967" modified="2016-01-20" version="1">MSRRTVTGQYAGPVSRAAATAIDVGVVLASYSLGVGIAGFLAQALLDVSLEDGTGLVATLALLTWGAVYVVAGTAVAGRTIGKAAVGLKVVARDGRPVRPVACVVRVLALPLSTSVFGIGALLIVLRRDHRALHDLIARTAVVYDWGDRPAQLPGPLAAYLQARTGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNV8</accession>
    <name>A0A0Q8VNV8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_22625</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892620.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58863">
        <property type="protein sequence ID" value="KRC58863"/>
        <property type="gene ID" value="ASE19_22625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="4"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="149"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC58863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="219" mass="23459" checksum="5EB0F959D543FD29" modified="2016-01-20" version="1">MTVRVVVADDQPLIRTGLTMILNAQPGIEVVGEATNGHEAVAVARELRPDVCLFDIRMPGIDGVEATRQLAGPGVEDPLAVVIITTFDLDEYVHGALKAGARGFLLKGAGPELLVQAIHAAANGDALISPDITRRLLTTLAGMERAVPPAQPIEPLTEREEEVLLTVARGRTNAEIADELHITLSTAKTHVAALMNKIGARNRVEIAMWAYETKRVKGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPT5</accession>
    <name>A0A0Q8VPT5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">(R)-citramalate synthase</fullName>
            <ecNumber evidence="4">2.3.1.182</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_05375</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>acetyl-CoA + H2O + pyruvate = (3R)-citramalate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19045"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30934"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.1.182"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-isoleucine biosynthesis; 2-oxobutanoate from pyruvate: step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the alpha-IPM synthase/homocitrate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.182" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894194.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54887">
        <property type="protein sequence ID" value="KRC54887"/>
        <property type="gene ID" value="ASE19_05375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="840579at2"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00066"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043714">
        <property type="term" value="F:(R)-citramalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003852">
        <property type="term" value="F:2-isopropylmalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013709">
        <property type="entry name" value="2-isopropylmalate_synth_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002034">
        <property type="entry name" value="AIPM/Hcit_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005675">
        <property type="entry name" value="Citramal_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036230">
        <property type="entry name" value="LeuA_allosteric_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43538">
        <property type="entry name" value="PTHR43538"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08502">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00917">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110921">
        <property type="entry name" value="SSF110921"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00977">
        <property type="entry name" value="citramal_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00815">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00816">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0412">Isoleucine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="10">
        <location>
            <begin position="11"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC54887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="535" mass="57711" checksum="0906AC57F835A970" modified="2016-01-20" version="1">MNEQLDLHGAFHVYDTTLRDGMQQEGLNPTVADKLAIARHLDGLGVGYIEGGWPGANPKDTEFFRRAARELDLKHARLTAFGATRKAGVRAADDPQVAGLRESGAGVVTLVAKSHVGHVEKALRTTLEENLAMVRDTVSHLRAEGQQVFLDAEHFFDGYRLDRSYALEVLRTAYDAGAEVIALCDTNGGMLPGWVSDVVHDVIENAQVRVGIHCHNDTGLAVANTLAAVDAGATHIQGCINGYGERTGNADLVNVVANLELKLDRQVLPPGLLTEATRIAHAVAEVTNVPPAARQPYVGTSAFAHKAGLHASAIKVDPDLYQHMDPAGVGNDMRLLVSEMAGRASIELKGKELGFDLSESPDVVNRVTARVKEMEARGYTFEAADASFELMLVEEAEGLRPSYFEVESWRVITETLTHAQPGEEAVSEATVKLKAADVRYVVTGEGNGPVNALDQALRSAIVQAYPEIAKFELIDFKVRILDQGHGTDAITRVLIETSDGESSWVTVGVGANVIEASWEALVDGLTYGLRRHHVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ63</accession>
    <name>A0A0Q8VQ63_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00665</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896762.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59578">
        <property type="protein sequence ID" value="KRC59578"/>
        <property type="gene ID" value="ASE19_00665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="961884at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020459">
        <property type="entry name" value="AMP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00154">
        <property type="entry name" value="AMPBINDING"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="18"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="388"/>
            <end position="466"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="473" mass="49113" checksum="EB6212DCEF55790E" modified="2016-01-20" version="1">MGVVPELLTALTAAAGRPVTIAGTTLTSTELRGAAAAVAAALPGRPRVAVHATPTMETVVAVVGALLAGATVVPVPPDSGTGELRHLLGDSAPDCWVGPVPPEAHGLPHRAVDLAARAPYAPVQIADDDLAFVLYTSGTTGLPKGVLITHAALTAGLDGLVEAWAWTADDVLAHGLPLFHVHGLVLGVLGPLRVGGGLVHVGRPTPDRYADAARAGATLFFGVPTVWSRIADAPEHAAALRDARLLVSGSAALPVPVFTRLRELTGLEVAERYGMSETLITVATRADGRREAGWVGVPIAGVETRLRDEHGAAVPEDGESVGQLEVRGPTLFAGYLNRPDATAEVWTDDGWFRTGDVACIAADGRHRIVGRASVDLIKSGGYRIGAGEIESTLLGHPTVAECAVVGLPDTDLGQRIVAFVVPRAEVADEAALAAELVEHVGAELSAHKRPREVRFTDALPRNEMGKVQKKLLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQE9</accession>
    <name>A0A0Q8VQE9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 12">Dolichyl-phosphate-mannose--protein mannosyltransferase</fullName>
            <ecNumber evidence="6 12">2.4.1.109</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">ASE19_01220</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <reference evidence="16 17" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Transfers mannose from Dol-P-mannose to Ser or Thr residues on proteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 12">
            <text>a dolichyl beta-D-mannosyl phosphate + L-seryl-[protein] = 3-O-(alpha-D-mannosyl)-L-seryl-[protein] + a dolichyl phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17377"/>
            <dbReference type="Rhea" id="RHEA-COMP:9517"/>
            <dbReference type="Rhea" id="RHEA-COMP:9527"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:13546"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:57683"/>
            <dbReference type="ChEBI" id="CHEBI:58211"/>
            <dbReference type="ChEBI" id="CHEBI:137321"/>
            <dbReference type="EC" id="2.4.1.109"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>a dolichyl beta-D-mannosyl phosphate + L-threonyl-[protein] = 3-O-(alpha-D-mannosyl)-L-threonyl-[protein] + a dolichyl phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:53396"/>
            <dbReference type="Rhea" id="RHEA-COMP:9517"/>
            <dbReference type="Rhea" id="RHEA-COMP:9527"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:13547"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:57683"/>
            <dbReference type="ChEBI" id="CHEBI:58211"/>
            <dbReference type="ChEBI" id="CHEBI:137323"/>
            <dbReference type="EC" id="2.4.1.109"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 12">Protein modification; protein glycosylation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 12">Belongs to the glycosyltransferase 39 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.109" evidence="6 12"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59676">
        <property type="protein sequence ID" value="KRC59676"/>
        <property type="gene ID" value="ASE19_01220"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00378"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004169">
        <property type="term" value="F:dolichyl-phosphate-mannose-protein mannosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027005">
        <property type="entry name" value="GlyclTrfase_39-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003342">
        <property type="entry name" value="Glyco_trans_39/83"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032421">
        <property type="entry name" value="PMT_4TMC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10050">
        <property type="entry name" value="PTHR10050"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02366">
        <property type="entry name" value="PMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16192">
        <property type="entry name" value="PMT_4TMC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 12 16" id="KW-0808">Transferase</keyword>
    <keyword evidence="9 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="153"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="181"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="205"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="244"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="274"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="313"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="466"/>
            <end position="483"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="490"/>
            <end position="507"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="513"/>
            <end position="536"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="548"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="domain" description="PMT" evidence="14">
        <location>
            <begin position="57"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="domain" description="PMT_4TMC" evidence="15">
        <location>
            <begin position="394"/>
            <end position="590"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU367007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF16192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KRC59676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="591" mass="65457" checksum="423CA25AE6340A22" modified="2016-01-20" version="1">MTAVDEETRATAGPPGLTTLSRTATGRRVPHAVDRALGPLRRLGARRRLVGWLGPIAITLLAFGIRLVHLSDPKRFAFDETYYAKDGWSLLNNGYIQEYLKDVDGNPKTDINADILAGHTQGVWNGEPSLAVHPDVGKWLIALGEKAFGMDPFGWRIASVVAGSLMVLVLCRLVRRMTGSTTLGCIAGLLLMFDGMHFVLSRLALLDIFLALFLLCGVHCIVADRDWLRATLAKRAARTDDGALTGWGGRVLFRPWLLAGGVCFGLAIGTKWTALYPLAAFGVLCWIWSAGARRMLGIRGAILKGMLADGVPAFVHLVLVGAMVYIATWGGWLVHAHEYEEHLSSTQYRQYTGHGHCADDDDSYVATDLDPTKKWPTADEKDAHGLGEAWQSLRSLWYYHQDVWTFHTHFLNCSEHFYESKPSSWLLINRPVGVAVTNDIPPDAQGCDAPAGSDCIKQVILLPTPVLWWGGVIALLFAVVMWIGSRDWRYGVAVVGALSTWLPWMMYDDRPIFLFYAIAVLPFTIIAITLAIGHLIGPSRLPSGRRTAGVVVGGAFVILTMLNFAWFWPVWTNQMLTHSEWLQRIIFARWV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQF3</accession>
    <name>A0A0Q8VQF3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_01130</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S51 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896683.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59658">
        <property type="protein sequence ID" value="KRC59658"/>
        <property type="gene ID" value="ASE19_01130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1485646at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008236">
        <property type="term" value="F:serine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03146">
        <property type="entry name" value="GAT1_Peptidase_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005320">
        <property type="entry name" value="Peptidase_S51"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03575">
        <property type="entry name" value="Peptidase_S51"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0720">Serine protease</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="243" mass="25918" checksum="06890376E3E0C4FB" modified="2016-01-20" version="1">MPANEPTILATSGGIVPGARTRWSVGPLTRHAVDLAGVDGRAPRVCFLATACGDQPAIIRDFYDMAQEAGYHASHLQLFTMPNVEDVRAHLLAQDVIWVWGGSVAGLLAMWELHGVGDAMREAWQAGVVLTGVSAGSICWHVGGTTDSFGPDLRPITNGLGLVPWSNGVHYDSEEQRRPLFQKLVGDGALPAGYATDDGVGVLYRGTTFAGAFTEQDGKAAYFVERAADGGVVETRLDTQRLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQH9</accession>
    <name>A0A0Q8VQH9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_01405</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896633.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59708">
        <property type="protein sequence ID" value="KRC59708"/>
        <property type="gene ID" value="ASE19_01405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1885467at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000951">
        <property type="entry name" value="Ph_dOase_redase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00409">
        <property type="entry name" value="PHDIOXRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="1" id="KW-0288">FMN</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="7">
        <location>
            <begin position="7"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="6">
        <location>
            <begin position="232"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="320" mass="34017" checksum="AD6102F1D4011092" modified="2016-01-20" version="1">MTTQPIVREFEADLRVVEANSGATDVVVLDLAAPDGTDLPPWTPGAHVDLVLGDDLVRQYSLAGSPADRGRWRVGVLRTPDSRGGSKAVHEIAAGDTVRVRGPRNHFPMVASPRYLFIAGGIGITPMLPMIEEAEAAGADWRLVYGGRSRSSMAFLDELSAYGDKVTLVPQDEAGMLDLDGLLGTPEPGTLVYTCGPTGLLDAIEQRCEAWPSGSLHLERFAAKAVDSSGDEEFELVLARSGLTLTVPADKSVYDVCKAAGVSVVGSCLEGVCGTCETEIVEVDGDVDHRDSLLNDDEKEANDAMMICVSRCSGRLTLDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQV4</accession>
    <name>A0A0Q8VQV4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Esterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892836.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56817">
        <property type="protein sequence ID" value="KRC56817"/>
        <property type="gene ID" value="ASE19_03110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="15"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="29138" checksum="B56C51CBD45D1A23" modified="2016-01-20" version="1">MTLHHTALGSTGSRVVFLHGLFGQGKNWTGIAKQLAEKHRVLLLDLPHHGRSDWLEHFDFAESAALVAGAVPADEPFTLVGHSLGGKVAMVLALLHPERVERLCVADISPVRYDESREFPGYFAAMRGMDLSQVVHRSDADRLLEPAVPDTTVRSFLLQNLRRDPDAPSGWSWQANLDVLARDLGVISGWPEEELAHAAPYDGPVLWLAGARSSYVQPAYDAAMDRWFPRNRKVTLKDTGHWLHSERPELFLQILQQFLGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR07</accession>
    <name>A0A0Q8VR07_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03100</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892835.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56816">
        <property type="protein sequence ID" value="KRC56816"/>
        <property type="gene ID" value="ASE19_03100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1770002at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010852">
        <property type="entry name" value="ABATE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023286">
        <property type="entry name" value="ABATE_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021005">
        <property type="entry name" value="Znf_CGNR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35525">
        <property type="entry name" value="PTHR35525"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07336">
        <property type="entry name" value="ABATE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11706">
        <property type="entry name" value="zf-CGNR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160904">
        <property type="entry name" value="SSF160904"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="zf-CGNR" evidence="1">
        <location>
            <begin position="133"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="20320" checksum="9CE5E769EF635556" modified="2016-01-20" version="1">MVFTHDTAASLQAAVTLVNSELEPVGLRTPEELDDFFADFGYTGRHDGDQAEVDEVHAVVPQLRAVLTAHRDEAVRIVNEMLRTAQALPQLQRHDGLDWHLHAIAPDRPLAERIVVETAMAMIDVIRADEMSRLAICADETCEGVVLDLSRNRSKRFCSVTCGNRNAVAAYRARQAEEAEESAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR84</accession>
    <name>A0A0Q8VR84_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_01465</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896623.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59718">
        <property type="protein sequence ID" value="KRC59718"/>
        <property type="gene ID" value="ASE19_01465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1254678at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="39"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="67"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="90"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="121"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="159"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="205"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="238"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="265"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="290"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="335" mass="33329" checksum="547C7BC322A8E9A6" modified="2016-01-20" version="1">MSTPQSVRQLARYPLIPVIIVMAIAFEASTGSFVGSQNLLGIATDSATLAIVAVPTAMLVISGYLDLSVGSTYALGAVAAGWLASEHDGGMLGCVLLALLAGLAVGAVNGFLCCGLGLSPFIVTLGTLTAVRGIAQQLAPLPQTGFSESFAWLGGSKVAGLPSPVVIALLVVLVAGFVLVATPVGRHIYAIGVSREAAYLSGVRVRMVPFGLFLLTGALAALAGAIKASVLGAVQSGTAGLGFELAVLTAVLVGGVALAGGSGSLVGVVLGVAFLGILQNGLTLLGVPTFWQQVAQGVALVVAAGLAYLSPKLEAMTAPRPEAPRPDAPRAVPVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR90</accession>
    <name>A0A0Q8VR90_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03670</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892929.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56912">
        <property type="protein sequence ID" value="KRC56912"/>
        <property type="gene ID" value="ASE19_03670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1892687at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360293" evidence="2">
        <location>
            <begin position="31"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="80"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="80"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="187" mass="18747" checksum="1802DC1CEAAC6B0C" modified="2016-01-20" version="1">MTKYRTRAAALLAAGAVAGGVSAATLSAHAADDTSSGSSSTAAERGPGGPGGPGGHGRGIGVDTTALAKALGVTEDELSDALDAVRDATKPDDADRPAAGEQPTPPTDEERAEREAAFVTALAKALGLSEDKVSDALDTVRAAREADRRQELGERLDTAVEDGDLTAADKASVLKAFDAGVLGGPRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSX2</accession>
    <name>A0A0Q8VSX2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Siderophore synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23485</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893931.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57725">
        <property type="protein sequence ID" value="KRC57725"/>
        <property type="gene ID" value="ASE19_23485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1630289at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013113">
        <property type="entry name" value="FAD-bd_9_SIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007037">
        <property type="entry name" value="SIP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039374">
        <property type="entry name" value="SIP_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30157">
        <property type="entry name" value="PTHR30157"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08021">
        <property type="entry name" value="FAD_binding_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04954">
        <property type="entry name" value="SIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="1">
        <location>
            <begin position="5"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="28935" checksum="A25167F76AC5441F" modified="2016-01-20" version="1">MSTRAQQYAADVVAREQVTPHLVRLVLDVPGFVSTGIPDEWVGLVVPGQFQSRYYTVRSIVPSTGSGQGARLVLDVVVHEVGLVTEWALGDPVGQQVTITEPKGSFLPPVDAGWLLLVGDLTALPAMARIAVEHGGALPTRIVAEVPTDSRVEDYFTDGVEVTWLPTDGESRLAEVVESLDFPEGPGYFWMAGESAQMRAIRKHLMRERKLPSTHYDVMGYWRSVAQRQPRAVDPGPIWRAGKAAGKSDEEIWADYDAAQEATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTA9</accession>
    <name>A0A0Q8VTA9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF5666 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_23690</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893967.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57761">
        <property type="protein sequence ID" value="KRC57761"/>
        <property type="gene ID" value="ASE19_23690"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2098907at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043724">
        <property type="entry name" value="DUF5666"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18914">
        <property type="entry name" value="DUF5666"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360359" description="DUF5666 domain-containing protein" evidence="2">
        <location>
            <begin position="24"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5666" evidence="3">
        <location>
            <begin position="200"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="147"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF18914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="275" mass="26160" checksum="3CFC60B7D514DE02" modified="2016-01-20" version="1">MSLPYLTRAARPVGTITCSLALAALLVGCGSDDTTTAGDEASAASGAPSGAPAGGPGGGGAMPGAFGEIAAIDGKVLQVRSQLTGQVAVTWTDDTTITSQAAAKLADVTAGVCVVVRTADTGTDAGSDTEAPTEVTAASVALSTSGDDGCSAGLGGGPGGGGPGGNGERPTDLPSDFPTDLPSGAPGGGRGGFGGFGTIGTVASVSATGFVVEGRDGDVTVTVGADTTYSKQVAADATALTVGRCVQAQGDADDTGAVTASTIRVSDKVDDQCGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW30</accession>
    <name>A0A0Q8VW30_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23065</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58941">
        <property type="protein sequence ID" value="KRC58941"/>
        <property type="gene ID" value="ASE19_23065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="39"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="2">
        <location>
            <begin position="120"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="44087" checksum="434FA215FF9D022B" modified="2016-01-20" version="1">MTMVTTILKRIERRVLAGLAVLLLVAVTVNLLRSPAEIKTVTAHFPRAVSVYEGTDVRVLGVNVGKVTAVIPEGNSVRVEMEYDAQYQIPADAQAVIVTPTLVADRFVQLTPVFGDGDKAMADGADIALQQTGVPVELDRIYNSLQTLTRALGPNGVNKDGTLDHLLEAGEKAFDGQGAQGNQMIHDLADAAETFGNGAGPLFETVTQLAEFTDTLAKNDKLVRAFMKDLAGVSGMLAEESDELERAVASVAQAVGSVKGFVTKNRDAFVTDVRKLTDVMNTIVSEKDSLARAMRAAPTAMANLQAGFDHVSDSQNSRIGIGGYVWDADGFICAVIQQNPAMPPALKDTACALVEKVLEPVLTKLPWLPPEYKSYLPKAKQAGADTSRGIQLPGAMPVSYMSGDGVSMATLLGGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW85</accession>
    <name>A0A0Q8VW85_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22635</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892618.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58865">
        <property type="protein sequence ID" value="KRC58865"/>
        <property type="gene ID" value="ASE19_22635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1464975at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009822">
        <property type="entry name" value="YaeQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038590">
        <property type="entry name" value="YaeQ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38784">
        <property type="entry name" value="PTHR38784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07152">
        <property type="entry name" value="YaeQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF011484">
        <property type="entry name" value="YaeQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01322">
        <property type="entry name" value="YaeQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="179" mass="19736" checksum="A185F8BAA813C3BF" modified="2016-01-20" version="1">MAAGATMHTFEVELADTDRGVYEEFTLRAARHPSETEAYLMTRVLAYCLEHQEGITFSEGISATDAPAVLVRDLSGKLLAWIEVGAPDAARLHTGSKAAERTTIYTHRDPAKVLAQWAGVRIHRSTEIVLHSFDPGFIDAAVDTMERRNTIALTVTERQLYLELNGVHLSSAVHDHPIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWX9</accession>
    <name>A0A0Q8VWX9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_23725</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893973.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57767">
        <property type="protein sequence ID" value="KRC57767"/>
        <property type="gene ID" value="ASE19_23725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Protein kinase" evidence="8">
        <location>
            <begin position="10"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="316"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="316"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC57767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="436" mass="45733" checksum="D16FCB9BE4B4952F" modified="2016-01-20" version="1">MGARRVAGRYTLQRAIGHGANGSVWLAHDEVLDRPVAVKRTGSLTDPDTAAARAEREARLAAQLSHPHVVAVFDLVTDDDAAWLVMEHVDGPPLSKVVQEAGPLSPDEAARALAPVADALVQAHQHGIVHRDVKPSNILVPGDGGTKLSDFGIARSTGDATLTRTGLVTGSPAYLAPEVAVGGAATPASDVWAVGATLVHVLTGRPPYHRDDADNAPLAVVLRIVNEDPPVVPEAGWLAPLLARTMARDPAERPSMAEVRDALRGRAWSAEQTVQLPAVPVQGRGRRPGARAGAAAVGAVAALAVIAALALQTNDQDTGGPTAGPQTSSTTPAAGPRAPSADEMEEFARDYVRTASTDPARGYAMLTPAYQDDSPRYAAFWGPMKHPEILDVSADPSAMTVTYTYRYQLSRGGRRTETVTLELVQEDGRLLIAGAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXG0</accession>
    <name>A0A0Q8VXG0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ferredoxin--NADP reductase</fullName>
            <shortName evidence="2">FNR</shortName>
            <shortName evidence="2">Fd-NADP(+) reductase</shortName>
            <ecNumber evidence="2">1.18.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_23090</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H(+) + NADP(+) + 2 reduced [2Fe-2S]-[ferredoxin] = NADPH + 2 oxidized [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:20125"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.18.1.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="2">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ferredoxin--NADP reductase type 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.18.1.2" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892540.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58946">
        <property type="protein sequence ID" value="KRC58946"/>
        <property type="gene ID" value="ASE19_23090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="692968at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004324">
        <property type="term" value="F:ferredoxin-NADP+ reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01685">
        <property type="entry name" value="FENR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022890">
        <property type="entry name" value="Fd--NADP_Rdtase_type_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="1 2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="3">
        <location>
            <begin position="8"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="286"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="327"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC58946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="330" mass="34393" checksum="2AEB6B8DBB602256" modified="2016-01-20" version="1">MSTPVDCDVAVIGAGPSGLFATYYAGFRGLRVALVDSLPELGGQVTAMYPEKAILDVAGFPTVKGRELVDGLVAQALTADPVQLLGRTASGLKVDEETGVELTLDDGTLVQAKALIITAGIGKFSPRPLPAAEGWVGRGVEFFVPSFAPYAGKDVVIVGGGDSAFDWAHHLEPIARSVTLVHRRDAFRAHQRTVEQVQASSVEIVTRAEVTALRDAAGGAAGELAEIEITVDGEATTRPAQAIVAALGFVADLGPLQQWGLETHRRHVVVDGAMRTNLPRVFAAGDITEYDGKVRLIAVGFGEAATAVNNAAVVVDPTAHVFPGHSSEGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VY34</accession>
    <name>A0A0Q8VY34_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glutamate ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_01145</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896680.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59661">
        <property type="protein sequence ID" value="KRC59661"/>
        <property type="gene ID" value="ASE19_01145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1191583at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015424">
        <property type="term" value="F:ABC-type amino acid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030679">
        <property type="entry name" value="ABC_ATPase_HisP-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039085">
        <property type="entry name" value="ABC_ATPase_HisP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="21"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="53"/>
            <end position="60"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="28387" checksum="CBD1956836116BD5" modified="2016-01-20" version="1">MTATPEAAVAPGSARPGEPLVELHGVQKWYGDLHVLQDIELTVGRGEVVVVIGPSGSGKSTLCRTINRLETVDQGDIKVDGKPLPQEGKALAAHRADVGMVFQSFNLFAHKTILENVTLGPIKVRRTPKAQAEARAQELLDRVGVGQQAAKYPAQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPEMIKEVLDVMVDLAERGMTMIVVTHEMGFARTAANRVVFMADGRIVEESDPETFFTQPESDRARDFLGKILKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZX5</accession>
    <name>A0A0Q8VZX5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23135</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893036.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58999">
        <property type="protein sequence ID" value="KRC58999"/>
        <property type="gene ID" value="ASE19_23135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1948290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="220" mass="23487" checksum="107F5FEA5457148D" modified="2016-01-20" version="1">MPSDLLDHARLAKGFMPENEGDLLFRIALERLPHGPALEVGTYCGKSGIYLGAAAQQVTAATGTTAVVFTVDHHRGSEENQAGWEHHDSSVVDPELGLMDTLGQFRKNIARAGLEDHVVAVVGQSTTVSAHWRTPLSLLFIDGGHGEQPARDDFAGWAHWVEAGGYLAIHDVFPDPADGGRPPYELIYLPALASGQFTEVTSTGSLRVLQRTSGAAGDPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W1S5</accession>
    <name>A0A0Q8W1S5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribosomal RNA small subunit methyltransferase A</fullName>
            <ecNumber evidence="6">2.1.1.182</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">16S rRNA dimethyladenosine transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">16S rRNA dimethylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rsmA</name>
        <name evidence="6" type="synonym">ksgA</name>
        <name evidence="9" type="ORF">ASE19_01195</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>adenosine(1518)/adenosine(1519) in 16S rRNA + 4 S-adenosyl-L-methionine = 4 H(+) + N(6)-dimethyladenosine(1518)/N(6)-dimethyladenosine(1519) in 16S rRNA + 4 S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:19609"/>
            <dbReference type="Rhea" id="RHEA-COMP:10232"/>
            <dbReference type="Rhea" id="RHEA-COMP:10233"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74493"/>
            <dbReference type="EC" id="2.1.1.182"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.182" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896670.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59671">
        <property type="protein sequence ID" value="KRC59671"/>
        <property type="gene ID" value="ASE19_01195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2030110at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052908">
        <property type="term" value="F:16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00607">
        <property type="entry name" value="16SrRNA_methyltr_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001737">
        <property type="entry name" value="KsgA/Erm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023165">
        <property type="entry name" value="rRNA_Ade_diMease-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020596">
        <property type="entry name" value="rRNA_Ade_Mease_Trfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020598">
        <property type="entry name" value="rRNA_Ade_methylase_Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011530">
        <property type="entry name" value="rRNA_adenine_dimethylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11727">
        <property type="entry name" value="PTHR11727"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00398">
        <property type="entry name" value="RrnaAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00650">
        <property type="entry name" value="rADc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00755">
        <property type="entry name" value="ksgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01131">
        <property type="entry name" value="RRNA_A_DIMETH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51689">
        <property type="entry name" value="SAM_RNA_A_N6_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="4 6 7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="rADc" evidence="8">
        <location>
            <begin position="40"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="297" mass="31166" checksum="6AA75CBBADB71C65" modified="2016-01-20" version="1">MTETSTPRLLGPAEVRELAARLDLRPTKQRGQNFVIDANTVRRIVRESAVSDGEVVLEVGPGLGSLTLALLEVGASVTAIEVDPLLAGELPTTIGAFAPGQADRFRVVLADAMTVAAVPGPEPTALVANLPYNVSVPVLLHLMALLPSLRHGLVMVQAEVADRLAAPPGSKTYGVPSAKAAWYADVRRAGAIGRNVFWPAPNVDSGLVAWTHHAPPTDKVAREQVFAVIDASFAHRRKALRGALRELAGGTERAAAALLAAGIDPLTRGEALGIDEFVALTIALSELGEPEPGDFDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN68</accession>
    <name>A0A0Q8UN68_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Betaine-aldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21695</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896212.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46442">
        <property type="protein sequence ID" value="KRC46442"/>
        <property type="gene ID" value="ASE19_21695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="744602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="3">
        <location>
            <begin position="23"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="488" mass="50253" checksum="9C425FE82D18E155" modified="2016-01-20" version="1">MTITAGPESGLTTGLFIDGAWSHAQDTFADLNPATGELLAEVSSGSAADIDRAVVAARAALEGAWGATPGVARGALLHRLADLVERDAAELARLEALDVGKPVGQPGMLDIPNAVATFRHFAGWADKIQGATIPTAGYLGMAPTHSYTVREPVGVIGAIVPWNTPLMIAAWKLGPALAAGNTVVVKPPEDAPLSILHLGTLIAEAGFPAGVVNIVPGLGETAGAALVAHPGVDKVSFTGSPEVGRLIQKAAADTFKRVTLELGGKTPQIVCEDANVEQAIQGIAMGLFFNQGEVCAAGTRILVHRSHYDTVVNALAQAADAQVLGDPFAETTTMGALINAEQQCRVLAYIEKGKAEGARLVAGGGSPDEPGFFVRPTIFADVDNGSTIAQEEIFGPVGAVIPFDTVEEAIAIANDTDYGLAATIWTQNVSLAHTLASKVRAGAVWVNGWAAIDPALPWGGMKASGIGRELGWAGIVANTEEKVVTIVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN84</accession>
    <name>A0A0Q8UN84_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21810</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896231.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46462">
        <property type="protein sequence ID" value="KRC46462"/>
        <property type="gene ID" value="ASE19_21810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1220078at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="39"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="2">
        <location>
            <begin position="118"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="478" mass="49331" checksum="80E3DB66B4A0D2BB" modified="2016-01-20" version="1">MTSLTKQPQRLVIGGATLLLLVTSIAGLRAMNDDERPDVFAVFASASPLIEGNDVKVAGVTVGKVESIEVRDGKALVGMSLDEDALPLHDDAKATIRPLSLLGERFVEIDRGTADAGTLASGDTIPVDRTSSAVDIDQVLNALDEPTGQALAALLTSVGNGMADRGEKVDGAIKALQPALEDTDKLVKVLDDQSAVLARMVTELQPVATSLASDNGKKLDGLLDAADELLRSTAAKQSELDATLTALPGTLASGRRTLRALRGAADATTPTLANLRPTTAVLSELTQELSGFAQAGAPAMKDLQPVLQRAQTLLKAAGPVAASMRRSSPNVLRAARGLQPIGTELISNLRHVLDFAKFWALTTNNSDGLSNYFRSLEIVNTEAVTGLLPPPKAPKNKPAANGPRMNGLLDGLLGDGGVLGSASGLGDLTDGLLTSLGGLLTGAKAGRSAGAAIDPVNVTGLTARQEQDMVTYLVGGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNC2</accession>
    <name>A0A0Q8UNC2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Inositol monophosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20825</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896058.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46287">
        <property type="protein sequence ID" value="KRC46287"/>
        <property type="gene ID" value="ASE19_20825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1741160at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046855">
        <property type="term" value="P:inositol phosphate dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020583">
        <property type="entry name" value="Inositol_monoP_metal-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000760">
        <property type="entry name" value="Inositol_monophosphatase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00459">
        <property type="entry name" value="Inositol_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00377">
        <property type="entry name" value="IMPHPHTASES"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00629">
        <property type="entry name" value="IMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="254" mass="26736" checksum="9456214B3CCA8815" modified="2016-01-20" version="1">MDTAAVLTLLQDVAAEVINPRFRALSDEQVSEKNPGDLVTVADHESEALITAALTAAYPDAVVLGEEAMAADASLLDRFAAADHAFTVDPVDGTKNFVNGSPDHAVMVAEVLGGEIVRGWIWQPQHERSYVAERGAGAWLNGEPLTVATGSAAPYRTARRHWVGRELGDLGTLELTWACCGVDYPHLIGGDAAALVYSRSMPWDHLPGALILTEAGGTIGRHDGGPVEPQRLEGGLVAAPDKATYDAVVAALPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNJ5</accession>
    <name>A0A0Q8UNJ5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Septum_form domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21285</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896138.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46367">
        <property type="protein sequence ID" value="KRC46367"/>
        <property type="gene ID" value="ASE19_21285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1953080at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026004">
        <property type="entry name" value="Septum_form"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13845">
        <property type="entry name" value="Septum_form"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="34"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="70"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="Septum_form" evidence="3">
        <location>
            <begin position="130"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="242" mass="25738" checksum="CD16483D6DA96591" modified="2016-01-20" version="1">MSAADWSRPGSSHRPTVGGHAPATVTSATAGWSLGWALVGCCYIGTIVSTVLALRVLAHRRATGEDQGSGLAIAALAVNAVAVGSAVLVAYVWLVVPEPSRGASPAIGVYDALPHVNGDPDVIASIADIEANDCIVLPALRGEEDADHRVNCEDSHDLESIGIVVLDDETFPGDAALERRGARQCRGHEFREWVGIPLKDSELEVTWVAPDEDDWEDGERIIFCFARDPAGPVDESFYGSRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UP88</accession>
    <name>A0A0Q8UP88_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phenylacetate-CoA oxygenase subunit PaaJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21645</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896408.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46639">
        <property type="protein sequence ID" value="KRC46639"/>
        <property type="gene ID" value="ASE19_21645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1668114at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034904">
        <property type="entry name" value="FSCA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002744">
        <property type="entry name" value="MIP18-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011883">
        <property type="entry name" value="PA_CoA_Oase4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01883">
        <property type="entry name" value="FeS_assembly_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117916">
        <property type="entry name" value="SSF117916"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02159">
        <property type="entry name" value="PA_CoA_Oxy4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeS_assembly_P" evidence="1">
        <location>
            <begin position="11"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="170" mass="18173" checksum="9193E27E1B6D290E" modified="2016-01-20" version="1">MLRREDVLARARAAAESVVDPELPMLTLLDLGVLRGVEIAEDGAVVAAITPTYSGCPAMATMRDDLQRTLQEAGFDDARVRVELDPAWTTDWITATGRDALAAAGISPPGAAPRRTGPVALTLTPMRRDICCPQCASAAVEVTSEFGSTACKALYRCLDCLEPFDHVKEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUN2</accession>
    <name>A0A0Q8UUN2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18540</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893311.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48910">
        <property type="protein sequence ID" value="KRC48910"/>
        <property type="gene ID" value="ASE19_18540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1522794at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025445">
        <property type="entry name" value="DUF4191"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13829">
        <property type="entry name" value="DUF4191"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="33"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="60"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="214"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="237" mass="26330" checksum="53190A8671668F05" modified="2016-01-20" version="1">MSNTPLDPSTMSRRRQILETYKMAREVDPAIRWWMLGSFLIFGGLGFAVFHFVLPGSGAFKMVLTVIGTLLIGLLALMIVFGRRAQKAAFARLEGQLGAAARALTMLRRGWVVEEVVGFTKQQDMVHRVVGPPGIVLVAEGNIARVKPVLISEHKKHERVVGDYPVHDVIVGNEEGQVPLKKLTRHIQKLGRQVKPAEITELRQRLRALDAQRPKAPIPRGPVPTSMKGMRGNLRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUZ7</accession>
    <name>A0A0Q8UUZ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Pyridine nucleotide-disulfide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_19265</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="2">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893431.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49029">
        <property type="protein sequence ID" value="KRC49029"/>
        <property type="gene ID" value="ASE19_19265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="267896at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001100">
        <property type="entry name" value="Pyr_nuc-diS_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000350">
        <property type="entry name" value="Mercury_reductase_MerA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="5">
        <location>
            <begin position="8"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_dim" evidence="4">
        <location>
            <begin position="346"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="183"/>
            <end position="190"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="269"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="310"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="3">
        <location>
            <begin position="44"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC49029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="462" mass="47660" checksum="D411DCDD54C58E8D" modified="2016-01-20" version="1">MPQPAEVDVVVIGLGPGGEHVAASLARAGLSVVGVDRRLVGGECPYFGCIPSKMMIRAADALAEARRVGALAGSADVSPDWTAVADRIRDEATDDWDDAVAVERLEKAGARFVRGEGRLDGPGRVVVETADGPVELTARRGVVLNTGTEPAVPPIDGLAGTPYWTNRDAVRLRELPSSLVVLGGGAIGCELAQAFSRFGVEVTVVEAGERILGPEEPEASAVVAAALEAEGITVRAGVGVTAVSHEGAFSIGLADGTSLGAQTLLVAAGRRTNLAGIGLDTVGADPSARTIEVDERMRVAGVDGLWAIGDITGKGAFTHMSMYQADVAIRDLTGEAGPWADYRAVSRATFTDPEVGSVGMTEKQARDAGLRVGVGTTKLQESSRGWLHKVGNEGVIKVVVDLDRDVLVGATAVGPSGGEIIGMLVTAVHAEVPLATLRGMHFAYPTFHRAVETALGAVTEVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UW22</accession>
    <name>A0A0Q8UW22_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GGDEF domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22020</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896266.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46496">
        <property type="protein sequence ID" value="KRC46496"/>
        <property type="gene ID" value="ASE19_22020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1635706at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF" evidence="1">
        <location>
            <begin position="205"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="319" mass="34874" checksum="0F06C3FF18909A0C" modified="2016-01-20" version="1">MTDETSGLERLLEAVQQLSMAGSLEEVQQVVRTAARDLGACDGATFVLRDGEQCYYADEDAIAPLWKGLRFPLEACVSGFAMLHRTPVAIPDIYADERVPHEAYRPTFVTSMLMVPVRTLDPIAAIGTYWATPHTPTDTEISLLQGLANATSVALDKITVHEQLANAVALREATHELATTDELTGLRNRRGFFEQSRRRWSDSTGVAAVAFIDLDGLKVVNDVEGHEAGDRLLRRLAEALQRNVRDTDVVARLGGDEFAVFSPDLPPAELLDRLKLAVGRRASVGTAALTDIDLLPDALLEADAQMYAAKRRHLSVRSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXQ0</accession>
    <name>A0A0Q8UXQ0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Methionine aminopeptidase</fullName>
            <shortName evidence="2">MAP</shortName>
            <shortName evidence="2">MetAP</shortName>
            <ecNumber evidence="2 3">3.4.11.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Peptidase M</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">map</name>
        <name evidence="5" type="ORF">ASE19_15650</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 2">Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 3">
            <text>Release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.</text>
            <dbReference type="EC" id="3.4.11.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 3">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="2 3">Binds 2 divalent metal cations per subunit. Has a high-affinity and a low affinity metal-binding site. The true nature of the physiological cofactor is under debate. The enzyme is active with cobalt, zinc, manganese or divalent iron ions. Most likely, methionine aminopeptidases function as mononuclear Fe(2+)-metalloproteases under physiological conditions, and the catalytically relevant metal-binding site has been assigned to the histidine-containing high-affinity site.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.18" evidence="2 3"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893523.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50054">
        <property type="protein sequence ID" value="KRC50054"/>
        <property type="gene ID" value="ASE19_15650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1285136at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070084">
        <property type="term" value="P:protein initiator methionine removal"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01086">
        <property type="entry name" value="MetAP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01974">
        <property type="entry name" value="MetAP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001714">
        <property type="entry name" value="Pept_M24_MAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002467">
        <property type="entry name" value="Pept_M24A_MAP1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00599">
        <property type="entry name" value="MAPEPTIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00500">
        <property type="entry name" value="met_pdase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 5" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M24" evidence="4">
        <location>
            <begin position="11"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="181"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="207"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="255" mass="27256" checksum="D09B559E96B30BF6" modified="2016-01-20" version="1">MIELRTPTQIEQMRPAGRFVASVIKALSEKADVGVNLLELDELAHRMIKDAGAESCYIDYHPSFGASPFGKVLCTSVNDAVLHGLPFDYTLQDGDLLSVDFAASVDGWVADSALSVIVGTPDEKDQWLIDVTQRALDAGIDAARAGNKLGDISFAIGSVAHAEGLKVNLQFGGHGVGKTMHGEPHVPNDGRAGRGLKLRPGLVIAIEPWFLHTTDEIEFDPDGWTIRSADGSRGAHVEHTVAITDGDPIVLTARD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXU1</accession>
    <name>A0A0Q8UXU1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Haloacid dehalogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15695</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893531.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50062">
        <property type="protein sequence ID" value="KRC50062"/>
        <property type="gene ID" value="ASE19_15695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1484726at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="21908" checksum="4326B1195C2F4844" modified="2016-01-20" version="1">MPDLVVGFDLDLTLIDTAPGFRQVLRALGDELEVEFPVEEMTRRLGPPLDLLLAPYLAADRIPAAGDRFRALYPDHAITTVPVLPGAHEAIAAVRRLGGRVVVVTGKFAANAQLHIDHTGLDVDVLEGWVWGVGKAEALRRESASVYVGDHVHDVEGALAAGVTSVSVLTGGCTADELVAAGTHVVLESLEDFPDWLSGYVSSRTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY55</accession>
    <name>A0A0Q8UY55_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peripla_BP_6 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893673.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50204">
        <property type="protein sequence ID" value="KRC50204"/>
        <property type="gene ID" value="ASE19_16510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="538961at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peripla_BP_6" evidence="1">
        <location>
            <begin position="12"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="359" mass="38153" checksum="B3B23ECFE275C420" modified="2016-01-20" version="1">MRPDARQDDVLPVAFVVPLQGPTGLYGPSCLACGELAVEQLNAGTGITGRRVELVVVDAGREPEVVAEDVGRLVDAGRVEAVAGWHISAVRQAITRRVGGRVVYAFGAMHEGGDPTPGVFMIGERPINQLLPAAHWMREELGVGRWAILGNDYVFPRVTGTTARLALQGTASEVVSETYVPLGTSDFASVIADLERQPVDGVIMLLMGQDAVHFNRQFARSGLTAALPRLSPAVEENTLLAGGAEANEGLYAAAAYFDGMDTAESSALARDYYARWGRWAPALNAVGESCYEAISFLARVGEVCGSLSVDAAAALPSGHFYSSPRGLMRLDGNLLDQDVYVAAADGLGFRIEQQIARVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY61</accession>
    <name>A0A0Q8UY61_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Rieske domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_16560</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893682.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50213">
        <property type="protein sequence ID" value="KRC50213"/>
        <property type="gene ID" value="ASE19_16560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1087129at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rieske" evidence="4">
        <location>
            <begin position="407"/>
            <end position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="448" mass="47457" checksum="9DEC9CAD934289FB" modified="2016-01-20" version="1">MNTPPKSDRSYDVAVVGGGIAGLTTALLLARGGRAVVVLEAREVGAGTTGRSTGKVSLLQGTKLARASRTNPPEAVHRYVEAGREGQAWLRHFCATHGLPVDGRDATTYAVTETGERRARRELEVARAAGLDVGWVAETELPFPVRGAVRLADQFQVDPAAVVRALRADVEAAGGVVREHARVRSVDHHDDGVRLRLTDGEVRCGVAVIATNQPIGLRGLFFARLTAQRSYAATLTSPWIPEGMHLSADDEVRSLRSVHEDGADLLMVGGSGHVTGRGSAPAHRDALLDWAVTTFAGAEVRRAWSAQDQSPASGLPYVGPVVPGDHRIQVVTGFDKWGLSTAPAAALLLAADLLDGTPPSWGTALRSWTPRQALAAGRAALANAEVGWQMACGHAQRLLRHDQRPLCTHLGGVLAWNDAEQSWDCPLHGSRFGTDGEVLDGPATRALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY68</accession>
    <name>A0A0Q8UY68_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16565</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50214">
        <property type="protein sequence ID" value="KRC50214"/>
        <property type="gene ID" value="ASE19_16565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1483891at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="320" mass="36503" checksum="D35C1B542A1719CB" modified="2016-01-20" version="1">MEIGPDGAIRGEVRAVGHQRVLHGLYRVATPELSPWDNFLRDLGALRLVLPDDAAYTHVTAARLRGWDLPALPEKTPFFAAVRTDNRPRRPGLICSRLTHDSDVDLVHGLRVDAPAEILLRAARDLGELDLAIMVESAVRLNDVDEDAIQEVLSSKRPGTSVLRRAWERRNPRSESPGETILHKFHQVMQVATRSQVEIFDDDGLFLCRADLVVVGTTSLHEYDGEIHRDKTAHRRDLRRERALSATPYVRRGFTLDDLLNHPATLMHELDRLLDRPHRTQRLRAWRTLIGDSLYSESGRSRVMNRWYRSTDSTDWARTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYB4</accession>
    <name>A0A0Q8UYB4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1990 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893715.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50246">
        <property type="protein sequence ID" value="KRC50246"/>
        <property type="gene ID" value="ASE19_16735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1586328at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018960">
        <property type="entry name" value="DUF1990"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09348">
        <property type="entry name" value="DUF1990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1990" evidence="1">
        <location>
            <begin position="33"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09348"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="19606" checksum="F2D76A8786AF7FFE" modified="2016-01-20" version="1">MENPSMRPLDPGSVVRLRAAPLTYVRPDPRPGTTAEVPPGFTAFTRSVDLRRTDLDGAAADLLAWRVHERAGLRVRASGPAGDGAVVEIRLGLGPASVRIPCRVVAVVDEPGRRGFSYGTLPGHPECGEEEFLLERRADGGLRFTVSAYSRPGSLLARAGGPLTGAVQRLMTARYLAAPDRLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYD6</accession>
    <name>A0A0Q8UYD6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19960</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895922.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46146">
        <property type="protein sequence ID" value="KRC46146"/>
        <property type="gene ID" value="ASE19_19960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2017769at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="15"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="56"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="90" mass="10152" checksum="AC577DC7A937425C" modified="2016-01-20" version="1">MILDLIAQAGDDSPIWLLAAGPAGGAGTYWLIYRYYRNNDKSHSFERETIIEAQPVQGGEERVDHISKTRDSDIDGDNSGNYRARVQRIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYG6</accession>
    <name>A0A0Q8UYG6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17055</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal stress protein A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893771.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50302">
        <property type="protein sequence ID" value="KRC50302"/>
        <property type="gene ID" value="ASE19_17055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2040681at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006015">
        <property type="entry name" value="Universal_stress_UspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01438">
        <property type="entry name" value="UNVRSLSTRESS"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="16"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="168"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="310" mass="32291" checksum="B98A1BC59898A860" modified="2016-01-20" version="1">MIAIDTTGEHPIPANSIVVAADGSDHAGRAVHWAAEQAFLERRPLSVVTTVHAPDVPTSAWIGPGAVHPFNPQQLLEGARALAQEAADLALHLHPGLDVSGVARVGDPRQVLVEISRNAHLVVMGSRGRGVFRSKVLGSVSAAVSRDAGCPVVVCRPQGGAGEAQRGILVGADGTPESLPVIEFAFHQASLMDLPLTAVHAVWDSVGAVHGPVMVSPRESGLDEYRVLLGESVAGISSKFPEVPVDLRLARGMAEDCLSDTTSLWNLIVVGRHPVDSLLRLVTGSVATTVVERSQTTVAVVPQADPAAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYG9</accession>
    <name>A0A0Q8UYG9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AAA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17135</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50316">
        <property type="protein sequence ID" value="KRC50316"/>
        <property type="gene ID" value="ASE19_17135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="228"/>
            <end position="355"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="431" mass="46156" checksum="7D7D5DCF45CD65B4" modified="2016-01-20" version="1">MTDIDALDLLEEGATPALRLLADAIDREFARRKPVTPTAYEHAASLLGVTTDAVEVLSESPDPPAAHAVGRWLHDAQERWGLTAAGAVPTAPALTATIPGASGDVRAFTAATVLLPAGTLAEVPLVVRVVLDRFGPDVDLIGRAQDTAVLPEVFESFLRTCRTTASPYWRGAYRVTSTNAGLQLQRWSAPKASRDLLKLDDAVWHTIDRRVHRVLDLADDLAARGLGTSTGLLLVGPPGTGKTQLGTVVAHELAGTATVLVPGTYVTEHFLTELFDLAADLSPCLILMDDLDLIAGERGQTNPHRLREFLNVMDGGLADRSGVVVIASTNDHRKIDKAARRSSRFDTVIKMEAPNVEGRRAILGRYLAWCDTALDLDAVARATEGATGADLKELVRATVLETDDAVTTAALLHQAREGGWREPKQAAGQYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYY8</accession>
    <name>A0A0Q8UYY8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">VOC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17180</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893793.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50324">
        <property type="protein sequence ID" value="KRC50324"/>
        <property type="gene ID" value="ASE19_17180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1467120at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041581">
        <property type="entry name" value="Glyoxalase_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18029">
        <property type="entry name" value="Glyoxalase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="2">
        <location>
            <begin position="10"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="108"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="136" mass="14520" checksum="2A18F18EF278EFC1" modified="2016-01-20" version="1">MSTDEHAATVRLWPALQFRDVDTMSAWLRTIGFVEHATHRDESGTVVHAEWLWPGGGGLMFGAVRDDSPLQPAGCGAVYLVTDDPDAVFDAAVTGGATVERAMVDQDYGGRGGSVRDPEGNHWSFGSYQPGAEPTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ24</accession>
    <name>A0A0Q8UZ24_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MazG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21550</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896188.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46418">
        <property type="protein sequence ID" value="KRC46418"/>
        <property type="gene ID" value="ASE19_21550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1099129at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004518">
        <property type="entry name" value="MazG_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011551">
        <property type="entry name" value="NTP_PyrPHydrolase_MazG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30522">
        <property type="entry name" value="PTHR30522"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03819">
        <property type="entry name" value="MazG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MazG" evidence="1">
        <location>
            <begin position="31"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="205" mass="22537" checksum="A14C3C761FAF2C51" modified="2016-01-20" version="1">MPASSGDGYAVEEFVAVMRRLRAECPWKREQTHRSLVRYLLEETYETVDAIDAGEDSGDWTHLAEELGDLLLQVVFHAVVAEERGDFDLDDVARGVTAKMRRRNPHVFGDVPADGLDAEAVNDLWQQVKAAEKADRPVDDGVPSALPALLYADKVLDRLERAGRPSTPTADPGDLGERLLALVAEARVAGIDPEQALRDAVRARL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ38</accession>
    <name>A0A0Q8UZ38_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">O-acetylhomoserine aminocarboxypropyltransferase</fullName>
            <ecNumber evidence="6">2.5.1.49</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_19900</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the trans-sulfuration enzymes family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.49" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895911.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46135">
        <property type="protein sequence ID" value="KRC46135"/>
        <property type="gene ID" value="ASE19_19900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="637281at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003961">
        <property type="term" value="F:O-acetylhomoserine aminocarboxypropyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019346">
        <property type="term" value="P:transsulfuration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00614">
        <property type="entry name" value="CGS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000277">
        <property type="entry name" value="Cys/Met-Metab_PyrdxlP-dep_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006235">
        <property type="entry name" value="OAc-hSer/O-AcSer_sulfhydrylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01053">
        <property type="entry name" value="Cys_Met_Meta_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001434">
        <property type="entry name" value="CGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01326">
        <property type="entry name" value="OAH_OAS_sulfhy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00868">
        <property type="entry name" value="CYS_MET_METAB_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001434-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU362118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="428" mass="45796" checksum="3B61C53F80BFEC88" modified="2016-01-20" version="1">MTHRPETLAVHAGQEQPDPATNARAVPIYQTTSYVFNDTEHAANLFALAEPGNIYTRIMNPTQSAFEERVAQLEGGVGALAVASGSAAITYAVLNLTYAGDNIVAISTLYGGTYALFAHTLPQYGIEVRFVDPNRPEDLAKHVDERTKLVFAETIGNPKINVVDTRAWADAAHAAGLPLVVDNTVTTPYLERVFDHGADVAVHSATKYIGGHGTSIGGVIVDSGNFDWAAHSERFPGLTTPDSAYHGVVWTEAVGNLAYIIRARTVLLRNTGAAIAPLNSFLFLQGLETLHLRLERHSENALAVAKYLQAHEAVAWVNYPGLEGDPSKAVADRLFTGKGYGGLVSFGLTSGRDGGKRFIESLELFSHLVNIGDAKSLAVHNASTTHSQLTPEELEAAGVPEDLVRLSVGIENIDDILADLEQALIAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZG2</accession>
    <name>A0A0Q8UZG2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cobalt ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_20475</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896002.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46231">
        <property type="protein sequence ID" value="KRC46231"/>
        <property type="gene ID" value="ASE19_20475"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025937">
        <property type="entry name" value="PDGLE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13190">
        <property type="entry name" value="PDGLE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359554" evidence="6">
        <location>
            <begin position="26"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="71"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="domain" description="PDGLE" evidence="7">
        <location>
            <begin position="13"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF13190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="109" mass="11308" checksum="D1474D8FD0634F6A" modified="2016-01-20" version="1">MSRRRFLAVGLLVALLVAGVGSYYASSHPDGLEYVAGRTGFGDSAEDPVDTGSPFADYGTKGVDDARLSGGIAGVAGVLLTLAIGGGLFYALRRRTPEPEPQLQNHDPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V192</accession>
    <name>A0A0Q8V192_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pyrimidine/purine nucleoside phosphorylase</fullName>
            <ecNumber evidence="3">2.4.2.1</ecNumber>
            <ecNumber evidence="3">2.4.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Adenosine phosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Cytidine phosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Guanosine phosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Inosine phosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Thymidine phosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Uridine phosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Xanthosine phosphorylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">ppnP</name>
        <name evidence="4" type="ORF">ASE19_15055</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a purine D-ribonucleoside + phosphate = a purine nucleobase + alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:19805"/>
            <dbReference type="ChEBI" id="CHEBI:26386"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="ChEBI" id="CHEBI:142355"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>adenosine + phosphate = adenine + alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:27642"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>cytidine + phosphate = alpha-D-ribose 1-phosphate + cytosine</text>
            <dbReference type="Rhea" id="RHEA:52540"/>
            <dbReference type="ChEBI" id="CHEBI:16040"/>
            <dbReference type="ChEBI" id="CHEBI:17562"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>guanosine + phosphate = alpha-D-ribose 1-phosphate + guanine</text>
            <dbReference type="Rhea" id="RHEA:13233"/>
            <dbReference type="ChEBI" id="CHEBI:16235"/>
            <dbReference type="ChEBI" id="CHEBI:16750"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>inosine + phosphate = alpha-D-ribose 1-phosphate + hypoxanthine</text>
            <dbReference type="Rhea" id="RHEA:27646"/>
            <dbReference type="ChEBI" id="CHEBI:17368"/>
            <dbReference type="ChEBI" id="CHEBI:17596"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>phosphate + thymidine = 2-deoxy-alpha-D-ribose 1-phosphate + thymine</text>
            <dbReference type="Rhea" id="RHEA:16037"/>
            <dbReference type="ChEBI" id="CHEBI:17748"/>
            <dbReference type="ChEBI" id="CHEBI:17821"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57259"/>
            <dbReference type="EC" id="2.4.2.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>phosphate + uridine = alpha-D-ribose 1-phosphate + uracil</text>
            <dbReference type="Rhea" id="RHEA:24388"/>
            <dbReference type="ChEBI" id="CHEBI:16704"/>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>phosphate + xanthosine = alpha-D-ribose 1-phosphate + xanthine</text>
            <dbReference type="Rhea" id="RHEA:27638"/>
            <dbReference type="ChEBI" id="CHEBI:17712"/>
            <dbReference type="ChEBI" id="CHEBI:18107"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the nucleoside phosphorylase PpnP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.1" evidence="3"/>
    <dbReference type="EC" id="2.4.2.2" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896471.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51404">
        <property type="protein sequence ID" value="KRC51404"/>
        <property type="gene ID" value="ASE19_15055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1937865at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047975">
        <property type="term" value="F:guanosine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004731">
        <property type="term" value="F:purine-nucleoside phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016154">
        <property type="term" value="F:pyrimidine-nucleoside phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009032">
        <property type="term" value="F:thymidine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004850">
        <property type="term" value="F:uridine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01537">
        <property type="entry name" value="Nucleos_phosphorylase_PpnP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009664">
        <property type="entry name" value="Ppnp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36540">
        <property type="entry name" value="PTHR36540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06865">
        <property type="entry name" value="Ppnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC51404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="105" mass="11183" checksum="962D521DC8FB3019" modified="2016-01-20" version="1">MSTETYANVTLDPRANVYFDGACVSHTFFLADGTKKSAGVIFPASLNFGTAAPEVMELNAGSCRIRLAGSEEWTEYAAGESISVPGDSSFDIEVVETLGYVCHYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1V4</accession>
    <name>A0A0Q8V1V4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15225</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896501.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51434">
        <property type="protein sequence ID" value="KRC51434"/>
        <property type="gene ID" value="ASE19_15225"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359626" evidence="2">
        <location>
            <begin position="28"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="436"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="451"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="479" mass="52120" checksum="CA1C503355054B03" modified="2016-01-20" version="1">MARFDWRTGAVVVVVAVTVLIGMMVLAEGTEEKTPRPRPSEPALTELDFAVWGTTEEIAAYQSVVDTYNAKSLDTNVTISSWPTVAAMLTDVRSGRAKPDLYLLPRSELAETIAEKRNLPLLDLVAEREIPIGDDFAREAVEAFSVDNDLQCMPYTVSPMVIYYNTKLVDFDAMAAEDLPVPKPDHLAWNFAEFRAAAEFASRPRLNTRGVHIDPTLRGLAPFIYSGGGQVFNEADEPTSLTLGEDGSVDALRQTLELLRDPRLTLSTKQLAQRPALKWFERGKLGMIAGFRNLTPQLRASGVDFDVMPMPNLGSAQTVGDLNGICLSRGKASRTGAAANFLSYLVEDDAVGTLAETGYIEPAKRTVALSDQFLQPDLMPEHAVVFTNAVRSIVPSPLMQQGAELRALVDPDIEDLLTTPFFKDLRESLLAIDEKSRSLLDPDYEPSDAPSEGSSDGTSPSGTASSSASSSATDDRERD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1Z2</accession>
    <name>A0A0Q8V1Z2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fatty acid--CoA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14805</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896431.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51364">
        <property type="protein sequence ID" value="KRC51364"/>
        <property type="gene ID" value="ASE19_14805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="38"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="444"/>
            <end position="523"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="531" mass="57058" checksum="21EE71FE0FEE58C0" modified="2016-01-20" version="1">MSTTVTELVVEDVLGAPVQVFAERFEALHEVLAASVAHGDRSYLVTLDGRLTFAEHARRVSSLAHALRTTYGVQQGDRVAITAANSQAWIETFWATVSIGAIAVGCNAWWSPRELQHALELTRPVLVVADERRRAQLPESAHDVIAIEADHERLATQHPDAELPRADVAQDDPAVILFTSGTSGRPKGAVHTHRNLCSVIGFHRSMDALAAQYGDPVAPQDKTYLLAMPLFHVGSLHNLAVPRLANGSTVALHLGAFDPAKVLQLVQDARVTHWGAVPTMANRLLEFDRVGDYDTSSLYAFSLASAPSSTAFKDRLRSHLPFAGALVDSYGLTESCTAVALATPLDLAESPGTLGTPIIGVEMEVRDPLGNVLPPGEEGEICVRSAYNMLGYWENPEATAAAIDAERWLHTGDIGTFDEKGRIRLAARRSDLIIRGGENVYPAEVEGLLVEHPAVRECVVLGVPHDDLGQEVGAVVVPTEAGIDVSALIAQLQEYAAGGLAHYKVPTHWRVAAEPLPRNATGKVVRPAVSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1Z7</accession>
    <name>A0A0Q8V1Z7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ATP-dependent RNA helicase HrpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_15215</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896499.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51432">
        <property type="protein sequence ID" value="KRC51432"/>
        <property type="gene ID" value="ASE19_15215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="58588at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011709">
        <property type="entry name" value="DEAD-box_helicase_OB_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007502">
        <property type="entry name" value="Helicase-assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024590">
        <property type="entry name" value="HrpA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010222">
        <property type="entry name" value="RNA_helicase_HrpA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11898">
        <property type="entry name" value="DUF3418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04408">
        <property type="entry name" value="HA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07717">
        <property type="entry name" value="OB_NTP_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00847">
        <property type="entry name" value="HA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01967">
        <property type="entry name" value="DEAH_box_HrpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="19"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="3">
        <location>
            <begin position="227"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="594"/>
            <end position="617"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC51432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1278" mass="142193" checksum="F7BA72A99C2B0139" modified="2016-01-20" version="1">MKISYPPDLPVSARRDDIAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGTPGEDGRPRMIGHTQPRRIAARSVSERIAEELGTELGDVVGYQVRFTDKTSKQSRIKLMTDGILLAELQRDRLLRRYDTIIIDEAHERSLNIDFLLGYLRQLLPRRPDLKIIITSATIDPERFAQHFADVRTGEPAPIVEVSGRTYPVEIRYRPLMDLPEDDADGEPIVRDQTEAIVDAVKELSAEGPGDILVFLPGEREIRDTAEALAPLGDGIRGVDVLPLYSRLSAAEQHRVFAPAKGSRRRVVLATNVAETSLTVPGIRYVIDTGVARISRYSARTKVQRLPIEPISQASANQRSGRCGRVAAGIAVRLYDEEDFEARPEFTDPEILRTNLASVILQMTSLGLGDIARFPFVEPPDRRNVQAGVQLLEELGAVSAKGDLTKTGRRLARLPIDPRLGRMLLEAERLGCVRDVLVIVAALSLQDPRERPGADHPVEQAQADQLHARFKAERSDFLTWLNLWNHLRQQQKELSGSAFRRMCKREFLNYLRVREWQEFVAQLRQVTKEMGVRLEAPGDVPDADGIHQALLSGLLSHVGLLEEREKSSRSGPGARKDGRRPGPREYLGARGARFAIFPGSGLARKNPQFLMAGELVETGRLWARQNAEIQPEWAERLGAHLVKRSYSEPHWSRKRQAVMANERVTLYGVPLAADRPVNYARIDPELSRELFIRHALVHGEWDTRHHFLRDNKRLLEEAEELEHRARRRDLVVDEHTLFDFYDARVPADAVSGAHFDRWWRDERRKQPNLLTFDPAMLTHDAAEEVSEADYPEEWSVAGGLTFPISYHFEPGAQDDGLTIDIPVSTLNRVDDDDFSWIVPGLREQLVVELIRGLPKALRVNFVPAPNTAREFLAAVPAGEEALLGALERYLRSTTGIHVPRDAWDLAALPAHLSPTYRVVDERGRVQGRGKSLADLKAPLQPQFDEALAAVASDSGVARTGETDWVFDEIPVTATWTRAGHEVEAFPGLVDEGTTVGLQVSGSADERDARHRLGVVRLLLLALGNGPTKGIADALSNAEKLGLAGTPYPSTQALLADCLRAVVVDAVDAREPVRTREGYDALLAALRTSAASEVRATLAELLRVLEVWREVDRLLSGRADLPLLPALTDLQGQLGRLVFDGFVGEAGTTRLRRHRTYLAAMRERRTALENGGPAALAKDRQRMDLVQPMQEAWLARVDALPEGRPPGAGLRAIRWMLEEYRVSQWAQQLGVDGPVSDVRLRKAFDALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V234</accession>
    <name>A0A0Q8V234_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15390</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896546.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51464">
        <property type="protein sequence ID" value="KRC51464"/>
        <property type="gene ID" value="ASE19_15390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="264136at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046306">
        <property type="entry name" value="DUF6421"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19985">
        <property type="entry name" value="DUF6421"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="457" mass="51220" checksum="1F72345F9ACF9477" modified="2016-01-20" version="1">MTDVLSLTDHLTAGADAVVAHPAWRALKDDVEQIRAWQLADGSVDLAAEAVPDREVVADAVARVVASVEALSPLLPHDAAYHRALVADLRRWADAGFGVPDFLDSLLAFQPAAERVDGRQHLVVFPMYTQNGNPDRNLEAVAFRMVWPEWLADLEATRYDNPLFCGIAFEDFTSGYDTNSAVLFPETVAVREAPERFSWGGIFCDREAARFRRVGTAAVDLLGVELPDEVRGLLEDQQRSQDAFVLWDMIHDRAHSHGDLPFDPFMIKQRQPFWMYGLEELRCDLTAFKAAVELEAEGNAVAADAQHAILLDRMFRFPVTGERARNYDGLGGQLLFAYLHQHDAIRWTDNKLRIDWDLAPQVTNALCGEIEQLYRDGIDRPKIVHWQAAYALVSRYLAPHPASKWARGAEALDFSRQPRELVDDVLPDEFPLSMFFEALAKKLKTVIAETRGITAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2P7</accession>
    <name>A0A0Q8V2P7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphatidylinositol kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16665</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893702.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50233">
        <property type="protein sequence ID" value="KRC50233"/>
        <property type="gene ID" value="ASE19_16665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1421354at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022292">
        <property type="entry name" value="CHP03843"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03843">
        <property type="entry name" value="TIGR03843"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="244" mass="26905" checksum="40D3F6F5F1B5F52F" modified="2016-01-20" version="1">MIIKGRIMPASNATFLADLDGTEIVYKPVSGERPLWDFPDGTLADREVAAHLVSAASGWDIVPRTWWDEGPHGPGMLQEWREVDPDQDAVDLVRSGTTPQGWLEVMEGLDDRDRPVTLVHEDTAALRRLAVFDVVVNNADRKGGHVLAMPDGHRHGVDHGIAFHHEPKLRTVLWGWAGTPLTDEETEVVTRLLGAIRGSLGDELGFHLTQHEIAALERRTERLLAAGVLPGPHGGWPPIPWPPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3S8</accession>
    <name>A0A0Q8V3S8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF6318 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_18535</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893310.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48909">
        <property type="protein sequence ID" value="KRC48909"/>
        <property type="gene ID" value="ASE19_18535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2045023at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046281">
        <property type="entry name" value="DUF6318"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19843">
        <property type="entry name" value="DUF6318"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359674" description="DUF6318 domain-containing protein" evidence="2">
        <location>
            <begin position="24"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="domain" description="DUF6318" evidence="3">
        <location>
            <begin position="42"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="193" mass="20618" checksum="5A80556FC09737A8" modified="2016-01-20" version="1">MRSLRAAVGASAAALLLLAGCGGDPDPGDPSSTWTPTGTPESPTSAATQAPVEPELPQAATKATEDGARAFIGYYWELINYVQVTGDVKELKRLSSTTCGGCQRAISAVETLYRDGGHAEGGQYQLKIDQIGEVKTASNSLYGVQAQIEVRNDEQLITRPDGATETSAPKSSRFNIYATWTGRVWRIDILEPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V480</accession>
    <name>A0A0Q8V480_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="14">CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_18655</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Lipid metabolism; phospholipid metabolism.</text>
    </comment>
    <comment type="pathway">
        <text evidence="11">Phospholipid metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893330.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48929">
        <property type="protein sequence ID" value="KRC48929"/>
        <property type="gene ID" value="ASE19_18655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1702107at2"/>
    <dbReference type="UniPathway" id="UPA00085"/>
    <dbReference type="UniPathway" id="UPA00232"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008444">
        <property type="term" value="F:CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004570">
        <property type="entry name" value="Phosphatidylglycerol_P_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000847">
        <property type="entry name" value="Phos_ph_gly_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00560">
        <property type="entry name" value="pgsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00379">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="8 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="10" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 12 14" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 13" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="105"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="171"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00025707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC48929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="23279" checksum="C93033328798D606" modified="2016-01-20" version="1">MSTSENTAVTGTPSNWNVPNALTTLRIVLVPFYGWALLHDGGDSVTWRTVAWAIFFVAMVTDKVDGDIARARNLVTDFGKIADPIADKAITGMAFIGLSIIMDTWWMWTITIVVLVREWAVTLLRLSVLKAVVIAAAQSGKWKTVAQALALGFLTLPLLEVDGWLDVPGEVTYVVAIVLLLVAFVLTIWSGYEFFRDVWKQRHSIRKAASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4L9</accession>
    <name>A0A0Q8V4L9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">3-ketosteroid-delta-1-dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_19505</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893475.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49073">
        <property type="protein sequence ID" value="KRC49073"/>
        <property type="gene ID" value="ASE19_19505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="153138at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033765">
        <property type="term" value="F:steroid dehydrogenase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008202">
        <property type="term" value="P:steroid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56425">
        <property type="entry name" value="SSF56425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_2" evidence="3">
        <location>
            <begin position="6"/>
            <end position="533"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC49073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="557" mass="59909" checksum="8CF8641ACE0523E2" modified="2016-01-20" version="1">MKESYDVVVVGAGGAGMAAALAASRKGLDTVLIEKSPYFGGSTARSGGGVWIPGNYAIKAAGQDDPGDRDAAKTYLDAIVGDVVPKVRRDTYIDRGPEVMDFLRENTPLKFVWVPEYADYLPEQPGGRPRGRSVEPVPMDARFLGDELERLHPPYTKAPANLIVMQRDYRKISLGLRTIKGPLTMIRVMLKRVLSLLLGRKMYAMGNAIAIGLRQGLRQADVPVEYETALQDLLVEDGRVVGVVVEQGGQTREVRATRGVILGSGGFEHSQELREKFLPQPTSTEWSTGAASNTGGGLLAGTAAGAATDLLDDAWWGPTIPLPGRAWFCLAERNLPGSIMVNAAGQRYMNEALPYVEATHEMYKGEATGVSHVPSYLVFDQTYRNRYLFAGLAGRQPFPGRWYKEGVVTRADSLAGLAEKLGLPEGSLDATVERFNGFARSGVDEDFHRGESAYDKYYSDPTVKPNCSLAPIEKGPFYAVKIVAGDLGTKGGLVTDERARVLREDGTVIGGLYAAGNVSSAVMGNTYPGPGGTIGPALVFGYLAAEDIAQHPTQENS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5C1</accession>
    <name>A0A0Q8V5C1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18565</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48914">
        <property type="protein sequence ID" value="KRC48914"/>
        <property type="gene ID" value="ASE19_18565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2046968at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="32"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="187" mass="19797" checksum="49DAA06543525CC2" modified="2016-01-20" version="1">MGSLRIVVATTVVVVLACVLVTWAALHDRSGADGRTPATAPAAAVAPGAGGAGARPEVEVLAVLRAWDRDRASAWAAGDVEALRGLYAAGAEAGREDVAMLRRWRARGLRVEGMAMQVLAVDVRARSSGHLVLVVQDRLVGATAVGRGRRTALPRDEPTTRRLELRRVSGRWVLVTAREVTSERGPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5Z5</accession>
    <name>A0A0Q8V5Z5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15705</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50064">
        <property type="protein sequence ID" value="KRC50064"/>
        <property type="gene ID" value="ASE19_15705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2104750at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="128"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1249" mass="131227" checksum="719C3DF85E2BECB2" modified="2016-01-20" version="1">MLAALVNPGAAHAAPLPAVAGGSAVRCAEPPPTEGATAETRDRFVDLWAPRFTDNAWRKRFVALEKVPADILAEGFHALPDATQLWLSACLVDKLLDVTNTTPTAQERETYLAGVAMVVFGKQGTEDLKDELNDTTPTPPPADTPPVNRDQTGEALDAVAEELAEAPSLTSARLPRASVAAPTARTSSTITAGLPPSFNDTFTSLPLVPQLLDALDELLQEVSKIQGKLFTLPVVNLLSPLFYKICAESPTMPLSCSISLPVGVPVPADVTGDHLPDVLAQLNPVTNLIDVGARFAVQRITPNSGPLPAHVFAVYDTPVVKKRVTVGVDGRASTLGGNSTARVLLKNVVAAITGDIQVAADVVSTNPGPKEAITFGVKSLTGGSGGVPLTEQDPLTGSVQLSPFPTTLNIGARMTHGSTSSKDTITVDTPTATRVDAVIDQATDSGPIDSNRRFTATVDKLPSSVRVDLVRQGTHQNIEYTANDEIGLVEATDTTTPDLTKPTEVDHAVYQVHGVPKHMKVDLDGNLVTYDASDSIDKVYAGVERMGGDRITAEVLGIPAHAKVLFDGKNSVLDWDADTATTSAAATAHLTAATLGMDRDFDAGLAITSIPAKWNASWADGNVLFEAPAAGIGSIVANVTNHEDHSTLPGDHLTAYYDEASGDLDASLQVSNLRRAAFTKLPDDGDGGGFEAGLDMGDHSTFSFAAEAHLAQGDLEASGQLSNLPSEITLRSEGGRITYDGDSNPDLTLSVAAGKAAALAATPVPPQVHGVAVRDGASGSDKAVRAKLYLTGLPTNLDLDSTNGIYTVTGFHPTNGTLVVDAKLKALAPKPLSLYLTQGIPTANPVDFTFGPIVTRTEPDGSHTTGLDYVASEPLGAFTANAQYDNTDEAQLTISAIPKTISVDVAFGADTKKVGIVMNQGISDITAAYKHVGDLDFAASVRLHDVPKTVDILIGKESSAGGGTTVDAPVFTMTAFAPGLDIDAFAAARIADPVDANAAVKLTVTDLGQTVTADLIGSRLHITSAPATHAFALEAAGRVQKSISLDWGSGEDGQTGFFQNRGYLAADLKIRRVTLGLTDFSDVNLRLGFTTGLDGSFGTFTFGQDSNLTVDLEDKFSVFIDWPDPLGSDTITIVDIPHLVIPFGNVAPRWHINENIQERAFHLPIIHFGIADCGVSFDVRPAPGYTTSGNTFTLGQPTNDGTNTPAWLITPDINLLGFSLPDFGLDIIAYFLSPYGNNIHPYPECQWLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V646</accession>
    <name>A0A0Q8V646_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ketosteroid isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10770</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894817.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52885">
        <property type="protein sequence ID" value="KRC52885"/>
        <property type="gene ID" value="ASE19_10770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1644255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12680">
        <property type="entry name" value="SnoaL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="23"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="16266" checksum="D65E44DD99C248DF" modified="2016-01-20" version="1">MITSDAIVWNAANDPHPARAASQRSYSAVAKGDLAEWLTVYAEDAVLEDPVGPSMFDPEGKGHHGHAGIAAFWEKAIAPIDTFEFQINDSFANPGSNTCANIGRIKTSFADGSHTTTDLIMVYVVDDEGRVKSMKAFWEPDRTMASFTAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V667</accession>
    <name>A0A0Q8V667_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10470</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894759.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52826">
        <property type="protein sequence ID" value="KRC52826"/>
        <property type="gene ID" value="ASE19_10470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="434825at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008912">
        <property type="entry name" value="Uncharacterised_CoxE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05762">
        <property type="entry name" value="VWA_CoxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="211"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="42856" checksum="A0C9214683B83348" modified="2016-01-20" version="1">MTDRDLPTRWRLVLGGDEADPADVPLSAEDLVRDRALAQLYDGQGRGNRGKGSGPRTAGLGTSAPSVNRWLGDIRTYFPSSVVQVMQADAMDRLGLHQLLLEPETMAAVQPDLNLVTTLVGLNRVIPEHSRATARAVVRAVTDQLEQRLRSRTVQAITGAVDRAARTRRPRHHEIDWRRTIGANLKHYLPDHRTVVPERLLGNARRSRQTQRHIILCIDQSGSMAESVVHSSVFGAVLASLRAVSTRLVAFDTEVVDLTDEIEDPVDVLFGVQLGGGTDINRALAYCQSLIERPEETVLVLISDLYEGGIAEEMLRRAHAITSSGAVMVALLALSDSGAPSYDVEHAAALSAIGVPAFACTPDQFPDLMAAAIEKQDLAQWAAANDIAIAGPPAEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V684</accession>
    <name>A0A0Q8V684_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavin reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09980</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894675.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52740">
        <property type="protein sequence ID" value="KRC52740"/>
        <property type="gene ID" value="ASE19_09980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1681849at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="19"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="170" mass="17840" checksum="BCB2D78365B011E0" modified="2016-01-20" version="1">MSTLTTNQDLDPVALRQAFGAFPTGVVALAAEVDGVPVGLAASSFTSVSLDPPLVSVSVARTSKTWPDLRRAGRYGVTVLADHHGAVCRQLSGPVGERFAGIDLTVAADGAVTLDEGLVRFDCSLYREVEAGDHVIVLLLVHAVEHGAEDDAGHPLVFHRSGFGRLERSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6C9</accession>
    <name>A0A0Q8V6C9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_11260</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894905.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52972">
        <property type="protein sequence ID" value="KRC52972"/>
        <property type="gene ID" value="ASE19_11260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1254678at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="26"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="66"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="109"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="141"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="181"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="224"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="256"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="285"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="310"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="336" mass="35699" checksum="40CBFAC17EF198A2" modified="2016-01-20" version="1">MSAAVATVGTTSLWDRIRTYSPPPRFLPLIVTIALFAGMFGAGSVRYENFGDPQVFLSLMINNAHLIVLAVGMTFVILTGGIDLSVGSVVAMSTMILAKTLQSGWSLPAAILAVLVIATLLGTVMGLLIHYFDIQPFIATLAGLFLARGVAYLISIESIPITNETFMKWAYEPLTLWSTYWIRWSVVVALVTVAVAAYVLAFTRFGRTVYAIGGNESSAMLMGLRVAVVKVGVYAVSGFCAGLGGLLFALNTPSGNSLHAVGMELDAIAAAVIGGILLSGGRGYVVGALVGVLVLGVIQTFITFDGTLTSWWTRIAIGVLLLVFVVIQRLMTRRQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6I9</accession>
    <name>A0A0Q8V6I9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10520</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894769.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52836">
        <property type="protein sequence ID" value="KRC52836"/>
        <property type="gene ID" value="ASE19_10520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2084304at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046198">
        <property type="entry name" value="DUF6230"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19741">
        <property type="entry name" value="DUF6230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359744" evidence="1">
        <location>
            <begin position="21"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="196" mass="19333" checksum="34504BF33FB55A2A" modified="2016-01-20" version="1">MGRTRLGRFAAVTVPASVLAAGLGVAMLQGMVGAVLSSADGFTLNSDRITSDGLKARTGSADVAGGDQATLYAETGSNTNASGIEVVTPNVTLPLLGIGAHLEVTSTDTTIALGSVGLNAKTLNTPNGATLGNTTIGVAQSEAGFDNTTTDSGYVADGFALTSASADLPNVNAVAYAITLDSLALDNLSLSVALGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6N3</accession>
    <name>A0A0Q8V6N3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">zf-RING_7 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17490</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48727">
        <property type="protein sequence ID" value="KRC48727"/>
        <property type="gene ID" value="ASE19_17490"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003743">
        <property type="entry name" value="Zf-RING_7"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02591">
        <property type="entry name" value="zf-RING_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="zf-RING_7" evidence="2">
        <location>
            <begin position="206"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="97"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="247" mass="26868" checksum="35DC4518E10A24FB" modified="2016-01-20" version="1">MNADPAAQLRLLDLQALDSQVDQLRHVRANPPQAAEIKDLLGKRADVDGRLRDQRIVVDDLAVAQAKADADVEQVKARRTRDRERMDSGAIADPKALERMQHELESLERRISTLEDEELEVMEQLEEAQSALAELTSAIEDLDARLGELTSARDEKGAEIDAEIASVAGGRAAIVADIPADLLALYDKLRASKGGVAVGELRARQCGGCQLALDPSELAEVRATPAETVVRHEECQRILVRTAESGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6R2</accession>
    <name>A0A0Q8V6R2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10865</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894832.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52900">
        <property type="protein sequence ID" value="KRC52900"/>
        <property type="gene ID" value="ASE19_10865"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="276" mass="30103" checksum="D628A468FEBD3AF5" modified="2016-01-20" version="1">MSDPTTFADLLEQFNEKYVQFQEDYWEAVNKIANMLNDGLSSFGKFLSDINPFDGNVLSKAIDKWNAEIFPALVKGMEDIVEKVQQAINDLAGNPGKLQIYAENYVTAQAMIFKQRNDAEIASDIDAAWGGDAARKYATVATVQVSNLEKLGEALEEGGKLTSAAALKILELWRKLIYEFASSYTDILEILASATDASKVISFEVPTALEAAAKVWQKVVDIGDILLEFFTNQATVDTINWLALQGTSGGLAGNEWPSISEGASDTINDPGAWAVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V703</accession>
    <name>A0A0Q8V703_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893580.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50113">
        <property type="protein sequence ID" value="KRC50113"/>
        <property type="gene ID" value="ASE19_15975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1859059at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359752" evidence="1">
        <location>
            <begin position="28"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="185" mass="20320" checksum="CD716140649A8DE2" modified="2016-01-20" version="1">MVSRRAVLPALVLPLLAFPAVHGPATATGAPASRTDVPSYTWNAEPSPVTLLLPRRQVTLRPTTYCWTAPSETTDDGGEIGSAVCSDGLEPTRAQLAKVDRTANLRFWFGRPGWRWSAQVRSFAHPRRAGCTVGRTPTAVSPRLFELAAPRYRGTYRVRLFGRGPEGDVLVSFSWRYGHRAGRCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V796</accession>
    <name>A0A0Q8V796_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-oxoacyl-ACP reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14800</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896430.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51363">
        <property type="protein sequence ID" value="KRC51363"/>
        <property type="gene ID" value="ASE19_14800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1356861at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="252" mass="26175" checksum="B5AD8D8B4B54040A" modified="2016-01-20" version="1">MNALQGKVAIVTGAGQGVGQGIALALATEGVSVAVVGRTAAKLESTCALLRERGVRATAYELDLLDTDAIAPLVDRIAADFGRLDVIVNNAYDGVMMPLLDMSLKNFTKGFVTGPFAAFAFMQAAHPHLVAAGGGSIVNLVTSAMVRWDPTNYGAYAAAKTALRSLTRTAAVEWAPAGIRVNSIAPHALSPGLKWWTETHPDEAAEFVAAIPMKRIGDPEADIGRAVVALVGPDLAYLTGATIPLDGGQAHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7C4</accession>
    <name>A0A0Q8V7C4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Thioredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_11645</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the thioredoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894969.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53039">
        <property type="protein sequence ID" value="KRC53039"/>
        <property type="gene ID" value="ASE19_11645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1630944at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005746">
        <property type="entry name" value="Thioredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000077">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="3">
        <location>
            <begin position="1"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="2">
        <location>
            <begin position="31"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR000077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000077-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="107" mass="11922" checksum="1E0DC51818B032C9" modified="2016-01-20" version="1">MTLQEITDADFEAEVLGSDVPVLVEWWAEWCGPCRQLAPVLEKLDDERGEALRVVRINQDLEPLRAAEHRVLGLPTMILFRDGAPVLQLAGARTKSSIERSIDAALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7P2</accession>
    <name>A0A0Q8V7P2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12495</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895115.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53188">
        <property type="protein sequence ID" value="KRC53188"/>
        <property type="gene ID" value="ASE19_12495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1544793at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="296" mass="31423" checksum="E24A347FD91C3FDA" modified="2016-01-20" version="1">MIGRRGPVLEVGPGPYRAGDTVAATVVVPRSIEGIHAARVELGYVNGFRHVWVGAAADSGPGTTKDAHAWVPVVDRPLDATGGVLVEGRHLAAFQVPAGAPGSSGTAGPHHRTVAWQVRLRIERRGRDVAVDVPLTVVVAAPDPAPERADLPLVQGERRTADSVLFDIAAERTCYLPGSEVRGVLGLTSRDPVARTALVAAWFQELLDSHPLEKVPPTGASEAHLPRPMIPVAKGVSLVQGRRVELPFTLPLPTGIDPTTDAVHSSLRWNVEFKVEFSGLTGEIVRARLPIVVHTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7V2</accession>
    <name>A0A0Q8V7V2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12935</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895721.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53259">
        <property type="protein sequence ID" value="KRC53259"/>
        <property type="gene ID" value="ASE19_12935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1345710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000572">
        <property type="entry name" value="OxRdtase_Mopterin-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036374">
        <property type="entry name" value="OxRdtase_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00174">
        <property type="entry name" value="Oxidored_molyb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56524">
        <property type="entry name" value="SSF56524"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="SSF81296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359784" evidence="2">
        <location>
            <begin position="28"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="Oxidored_molyb" evidence="3">
        <location>
            <begin position="224"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="499" mass="52862" checksum="7D454C4C0BBD1494" modified="2016-01-20" version="1">MKARLLWSAYGILATLVGVGLAHLAAALTDPAASPVLAVGSTVIDLTPTPMKDWAIEQFGSSDKTVLVGSVMAGVLVLAAIAGAVARRRLAVGMGMLVGLVAVAAVAALLRPSAEPTDVFPSLVAAVTGPLALRLLARTQQHAETDGSRRTVLLTAAALTAAAAVGGLAGRVVSSVRARPEDIALPDPTDPAPAFPRGLDDQVPGITRFRTSNDDFYRVDTRLDVPVISSEDWTLTIDGDVDTKVVLTFDDLLDMPMIERDITVTCVSNSVGGPYVGGARWLGVRLTDVLDLAGIDRTKADQILSTDFDGMTISTPLDLATDGRDAILAVGMNGEQLPREHGFPVRMVIPGLYGFISATKWLSRLTLTTYDDQKAYWTERDWATDAPIKISARIDTPKALAQLDAGDTVIGGVAWAQERGGIAKVQVRIDGGAWEDAQLGPNAGEDYWRQWFHRWPAKSGSHRIAVRAVSGDGEPQTAARAEPFPDGASGIHELLVTVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8M8</accession>
    <name>A0A0Q8V8M8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">1-pyrroline dehydrogenase</fullName>
            <ecNumber evidence="5">1.2.1.19</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11860</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.19" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895199.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53644">
        <property type="protein sequence ID" value="KRC53644"/>
        <property type="gene ID" value="ASE19_11860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="744602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033737">
        <property type="term" value="F:1-pyrroline dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019145">
        <property type="term" value="F:aminobutyraldehyde dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="4">
        <location>
            <begin position="24"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="480" mass="51752" checksum="9C96685A203A9BCC" modified="2016-01-20" version="1">MTTVVESGQTASSWLAGAGDTDVSVVINPVTEKPIATYRNASVADVDEAVQRAVAAKRAWGNTPPVERAELLLKIADAVEAEAEEFALLECENVGKPITHARDEMPWAWDVIRFSAGAARLSHAPAAGEYANGSTSWLRREPLGVIGLITPWNYPLLMAAWKLAPAIAAGNTVVIKPSELTPQTTIKLVELMNRFLPDGVVNLVLGDSRAGRAIVEHPAIRMVALTGDVSTGKTVAALAAATLKHTSLELGGKAPIVVFADSPVAQTARDLVEFGFANSGQDCTAACRIIVEDAAYDEFVEAYCAEVAKIKVGDADDPATTMGPVISERQLERIEGFVERARGYGAVIRTGGERLPRAGWYYAPTVVTDIDQSSEIIQREVFGPVVTIQRGRDDDEMLEMANGVDYGLSASVWTTNLARTLRFTRELDFGTVWVNQQIFTASEMPFGGFRDSGYGKELSGHGLDEYSQFKHVMVKPELAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V921</accession>
    <name>A0A0Q8V921_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07085</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895277.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53845">
        <property type="protein sequence ID" value="KRC53845"/>
        <property type="gene ID" value="ASE19_07085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="688616at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019198">
        <property type="entry name" value="Beta_propeller_containing"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09826">
        <property type="entry name" value="Beta_propel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="40"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="153"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="155"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="673" mass="71876" checksum="83F9B4F0B4B839ED" modified="2016-01-20" version="1">MTDLENLWDDYPTGKPPVTAILAATAGEQRRRRRILLRPLLTAGVVTGIAGAFVAGTLVDGGSGPGTPPGGGSAQPERVAFQADLEPAASCDELLQSYVARGKKLVTAWGWNGGPVWYSADLRNQRGALNAIEDAPVPVAGRLDRSLAAKSLRPATEGSFSSDTGTNVQEAGVDEPDTVKTDGTLLVAVRDGDLVTYDVTGSSTEQLSTFPLRGIEAPEIMLAGDTVVAVGADRDAEPDHPGTRVLTVSLASPGEPELTDDVRYDAGVLSARQHGSAVRLVLESGLPDLDFVEPNDKRSPQAALRRNRALVAKSTIEDWLPSITTDDDASRPLLDCTDVAVPSDELALDTTSVVGFDASKPATVDAIGLAGHTGIAYESDDHLYLATQAGWGGGCVRCLIDSGSPTGFGPAGGSSYLFDFALDGTAATHVASGEVEGAIRDRWSIDEAGGVLRVAVGPTSETGNFNSVVTFERRGKQLVEHGRLDRLGRNEDIQSVRWFDDLAILVTFRQVDPMYAVDLTDTSRPRLLGKLKIPGFSSYLHPLGNLRMIGVGEGPSSRGWGAQVGLFNVRDVTRVRRLDVHSYGGGFQALAGADPRSFTWLPDKRTVITVLERWTGERRVGYVSVLHVKDSRLHQRLVQVEYGDDVDRVRTVPLPDGRVVLVTGDKAQFFELP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAC8</accession>
    <name>A0A0Q8VAC8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08160</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895468.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54036">
        <property type="protein sequence ID" value="KRC54036"/>
        <property type="gene ID" value="ASE19_08160"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359844" evidence="1">
        <location>
            <begin position="26"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="25064" checksum="D192D4BB30EA1790" modified="2016-01-20" version="1">MRRSIAAGVVLLAGLGMTGCGTLGATWQAVPTGSPVLTKDGAQLALLVPDNVGDEFRAFEEPSWIGGGCLENPTDVLDYLGPVEAKRAIIHDTGWPTVDSYAWGTADDEQMAAAFDELQQAIHDCTEVSMRYGEDYYDLRVRPERPSTFPGADERIGYVARGWGRSKGERWPVVLRMSFLRFGSSAIAVQADSYTNDDDVHEGLVELAAHRLAAVLEGRTPALEGYEPGTSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBS7</accession>
    <name>A0A0Q8VBS7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04345</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894363.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54718">
        <property type="protein sequence ID" value="KRC54718"/>
        <property type="gene ID" value="ASE19_04345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1239251at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidase" evidence="2">
        <location>
            <begin position="72"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="149"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="513" mass="54311" checksum="780583DF839D4761" modified="2016-01-20" version="1">MPINRPDSSALQAIAANYGLTMSTSDMEQYRIATHGALDAWDAVEAAHEKIASPPPDRVWNKPASKDNPWGAWYVTTEIQERAEGPLAGVRVAVKDNTSVAGVPMMNGSATLEGFTPSRDATVVSRLLDAGAIITGKSVCEDLCMSGGSHSSRTGAVRNPWDPTRSSGGSSSGSGVLVATGGADLAISGDQGGSIRIPAAWLGLVGHKPTWGLVPYTGAMPVEQSVDHLGPTARTVVEAARMLTVIAGPDGLDPRQPRAWERIDYESELRRGSRGLRVGVVTEGFGHPDSDPAVDETVRAGVRRLTSAGLLVEEVSIPWHLMAPALFAVIACEGGLTQLVEGNAFGANWKGRYDEDLIAFYGAQWRRSPDQFPEGVKLAMLSGRYARDVDFGRHYAMARNLERTLAAAYDEALSRYDVLVMPTSPVSATPLPGPDASVLELLARGSEQLVNTSAFDVTGHPACSVPAGMLDGLPVGMMVVGKQFDDATVLRVAQAAERELGGFQSPPTNKETA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCE5</accession>
    <name>A0A0Q8VCE5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_14260</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897006.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53497">
        <property type="protein sequence ID" value="KRC53497"/>
        <property type="gene ID" value="ASE19_14260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="930905at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="3"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="139"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="22106" checksum="39686988053F43AE" modified="2016-01-20" version="1">MIRIVLVDDHPVVRAGLRALVDGQDDLSVVGEADGLDAAVALVSADRPDVVLMDLSLGEGRAGGAAVTAAVRSLPQPPEVLVLTTYDTESDILRALEAGARGYLLKDAPPDELFAGIRATARGETVLAPSVAATLVRRTTPGATTITEREVEVLELLSRGLGNKEMARELFVSEATVKSHLSHIYTKLGVDTRAGAVAAAIEQRIIRPVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCM6</accession>
    <name>A0A0Q8VCM6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Formate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_05980</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mo-bis(molybdopterin guanine dinucleotide)</name>
            <dbReference type="ChEBI" id="CHEBI:60539"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894084.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54990">
        <property type="protein sequence ID" value="KRC54990"/>
        <property type="gene ID" value="ASE19_05980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="50471at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008863">
        <property type="term" value="F:formate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02787">
        <property type="entry name" value="MopB_CT_ydeP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02767">
        <property type="entry name" value="MopB_ydeP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037951">
        <property type="entry name" value="MopB_CT_YdeP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010046">
        <property type="entry name" value="Mopterin_OxRdtse_a_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041953">
        <property type="entry name" value="YdeP_MopB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43105:SF4">
        <property type="entry name" value="PTHR43105:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01701">
        <property type="entry name" value="Fdhalpha-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Molybdopterin" evidence="5">
        <location>
            <begin position="112"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="domain" description="Molydop_binding" evidence="6">
        <location>
            <begin position="639"/>
            <end position="745"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="754" mass="83142" checksum="73FD4FEAAB768381" modified="2016-01-20" version="1">MADESWSQKDYHHPAAGWGAAISVNKVLAKEHAFGRGTAAMFRMNHENDGFDCPGCAWPDDLKGLKLDICENGIKHVVWEMTSKRVDRAFFAQHTVTELEGWSDFELEDQGRLTEPMVYDAATDTYVPITWGDAFALVGAELRALDDPNQASFYTSGRLGNEATFLYQLWARELGTNNLPDCSNMCHEASGRALNASLGTGKGTADLKDWEAADALFIMGVNAASNAPRMLTALTEAFDRGAQIVHVNPLIEAASRKAIIPHEMVDMALMKATRTGTLNLQVRPGGDMALMRGMAKALLEEFATDPKALDVEFIERYTHGFSDYRAVVEATPWSELVEQSGLKEKEIRKAARIYSESDRTLISWCLGVTQHEHGPDAIREIVNVLLLRGNLGREGAGPSPVRGHSNVQGNRTCGIDHRPPADFLDRLDTATGITAPREHGLDTVSTIAAMHDGSVKVFVGMGGNFVMAAPDTPYTAAGLRNCELTVQVSTKLNRSHLVHGRKALILPCLARTEKDQQKHGIMETSVEDSMSMVHLSRGKRKPPSPHLLSEPAIIAGMAKASLPGSATPWEWYVDDYDRIRDTMAKALIGFEDFNRRVRLPLGFRLKQPARELVFQTPSGRAEFSAAPLTNVIPAEADVLVLQTMRSHDQWNTTIYSDDDRYRGVKNLRTLVFLHKDDMKARGIRQGGLVDIVATCKDGTTRELRGYTALRYDLPRGSAAGYMPEMNVLIGAGDYSEQSDQPLMKNVRVRIAPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCN6</accession>
    <name>A0A0Q8VCN6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06060</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894068.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55006">
        <property type="protein sequence ID" value="KRC55006"/>
        <property type="gene ID" value="ASE19_06060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="171570at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13519">
        <property type="entry name" value="VWA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="1">
        <location>
            <begin position="475"/>
            <end position="654"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="686" mass="75311" checksum="1E25424B81ACAA49" modified="2016-01-20" version="1">MSRYRRYDGGDPLAPPVDIAEALDAIGQDVMSGYSPERAMREFLRRGGDDQAGLDDLGRRVAERRRELLQRHNLDGTLNEVRELLEKAVLEERKQLARDALMDDGDRAFREMRMQNLPDSPAAAVTELNDYDWQSSEAREAFEQIKDLLGRELLDQRFSGMKQALENATDEDRQAINEMLSDLNELLEKHARGEDTPEDFQEFMAQHGQHFPEDPQDIDELLDAMAQRSAAAQRMLNSMTPEQRAELMQLSAQAFGSPALMEQLDRLDQNLMSLRPGEDWGGSEDFGGGPGDTGLGLGDGTGVLQDLADLDALADQIAQSYGGARLDDIDLDKLARQLGNEAAVDARKLKELEQALRESGAMERGFDGELRLTPKAMRQLGKALLRDVAEKMSGRQGQRDLRQAGAAGDLSGATRAWEFGDTEPWDLPRTILNGVLRRAGALRDASSLGSSGTEFSQRLLSIDDVEVAETEARTQAAVALCVDTSFSMAMDGRWVPMKQTALALHTLIGSRFRGDSLELIGFGRHAQTMKIEELTSLDARWAKGTNLHHALLLANRHFRKHPNAQPVLLIVTDGEPTSHLESSGDVYFSYPPHPMTIALAVRELDNARRIGAHTTFFRLGEDPGLARFIDSMARRVDGSVVAPEAGDLGAAVVGSYLGSRRGGRPGAGGGPGSYGDFFGSRGFWVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCX9</accession>
    <name>A0A0Q8VCX9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_14405</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53523">
        <property type="protein sequence ID" value="KRC53523"/>
        <property type="gene ID" value="ASE19_14405"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359927" evidence="3">
        <location>
            <begin position="47"/>
            <end position="891"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="867"/>
            <end position="885"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="65"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="891" mass="91226" checksum="9BADF0D9CA4A1184" modified="2016-01-20" version="1">MGIMNISPRPSRRSDFRRASARRTGLGRRIALTVPVAALVAVSAFAAPGFADDAGGAGDAPSSEAPAPDPAPAPAPEPAPAPEPKPAPEPKPAPEPEPAPAPEPPAEEAPAPETPAEEAPAEEAPAEEAAPQEIPADAAPAGEVATQGARLVRNVATLDVPINDKKVVICKYSATPEIGEKAQTVNISSISVLPADWVPGTFPAFFTDAQGASISPRYAFEGENTNDVAGMIDELCPPYSPPGIISAPEVPINDPCGPGNVVYGTVPESPNYTIVRNDDGSITLTAVGNFLFAPLPGTATYTYPAPVDAGGFCVVTPPAKPPVTDPCGPNNAHFEPADVPPSTATYTVVLSQDGKTVTITAIPPNAFDAQGTTEVVYTATDAGGFCVVTPPAKPKVTDPCGLGNAHFDAADVPPSTATYNVVLSQDGKTVTITAIPPNAFDEQGTTEVVYTATDSNEPCIVAAPGAPAPEDPCGPNNAFYPDAAIPASTDAFTVEVNDAKTVITITATAGNVFDDQGTTEVVYTATDSGEPCLIDVPEPQQTDPCGPNNAFFDVIPESTDDYTVVVSDDKKTVTVTATAGNVFDEEGTTELVFTAKDSGEPCVVPAPGPPAPEDPCGPNNAFFPDGAIPASTDAFTVEVNDAKTVITITATLGNVFPGGLVELVFNALDGESGDPCIVEPPVAPEPVDVCGPDNAVFAEGDVPASTDDYTVVLSEDMKTITVTATEGNVFDEEGTTELVFTAVDSGEECPVAQLVACVYASPDLARLGTGVPLGDIAIIDEPTATANGFEGIFPFTYVDGTDEVELIAYLEDGQTADDFDALEMCGEVAGICEDAATNPDAVDDNGDLCTPEKEADALPNTGGPAGFLLPLGALMVLVGAGLVMVRRPHSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDJ9</accession>
    <name>A0A0Q8VDJ9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">GtrA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_10220</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GtrA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894717.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52784">
        <property type="protein sequence ID" value="KRC52784"/>
        <property type="gene ID" value="ASE19_10220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1813832at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007267">
        <property type="entry name" value="GtrA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04138">
        <property type="entry name" value="GtrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="34"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="68"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="113"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="domain" description="GtrA" evidence="7">
        <location>
            <begin position="9"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="147" mass="15969" checksum="375BAFDA8C391CC0" modified="2016-01-20" version="1">MSNRTAVLRFAAVGVCNTLIDLVLFVLLRDHLGITGANFVSSTSGMVFSFVVNGLFTFQADKLTLRHAALFVATNGVVMWVAQPLLIHGWLWVLERGPEVAVGPMSAADVHLAGAKLASIACCLVLNFFAYRYVVWPVEHPGEERPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE00</accession>
    <name>A0A0Q8VE00_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Transport permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_05870</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ABC-2 integral membrane protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55151">
        <property type="protein sequence ID" value="KRC55151"/>
        <property type="gene ID" value="ASE19_05870"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC_2_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006648">
        <property type="entry name" value="DrrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51012">
        <property type="entry name" value="ABC_TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="52"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="104"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="129"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="160"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="219"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="domain" description="ABC2_membrane" evidence="9">
        <location>
            <begin position="6"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU361157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC55151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="245" mass="26037" checksum="8E56BC91A2FD29A5" modified="2016-01-20" version="1">MVADTWNVLVRELQPVLRQPASVLFAMVQPLVFLGLFAPLLPESPDGSALQWFVPGIVAMTALMSASFTGANLSEEIISGSFERLLVSPVRRSSLMIGKALREMVPLVLQTALIVAVVTPFAFDLHLAGVLTGVVVLVPFSVGLGALSLALAIAAKEQAWIFWTVQQTVIFPLLLLAGVLLPLDGAPGWLRTASDLNPLKYLVDAERTLFAGSFPLDTVAAGFGASLLVGAFGLWVGVRTMNRAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEG1</accession>
    <name>A0A0Q8VEG1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">D-ribose transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_11460</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894935.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53005">
        <property type="protein sequence ID" value="KRC53005"/>
        <property type="gene ID" value="ASE19_11460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="551294at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="15"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="261"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="494"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="47"/>
            <end position="54"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="516" mass="54492" checksum="D35B57A1F21B2D64" modified="2016-01-20" version="1">MTTATGTEGRTAPTLELRSVAKSFGAVAALRSGTLEVAPGSIHALVGENGAGKSTLVKIVAGVHRRDSGVFRLLGEDVDFGSTADSKSAGVAVIYQEPTLFPDLSVAENIFMGRHPLGRGRRIDRTRMYDESNALFARLGVTIDPRRVANGLSIADQQLIEIAKAISLDAKLLVMDEPTAALSGNEVARLFAVARSLRDEGRALVFISHRFDEVFDLCDTVTVMRDGAYVSTHLVAETTEAEIVSRMVGREVAELFPKTPAAIGDVVLDIQGLGSTGEFHDISFQVRAGEIVGLAGLVGAGRSEIARAVFGVDGYDEGRVTLHGKAVPKKQPRAAIRAGMAFVPEDRRQQGLVIEGSVARNIASVIRGGLAKGGLLTAAAENKASAPWASRLQVKTSALDMRAATMSGGNQQKVVIAKWLATDPKLLIIDEPTRGIDVGTKAEVHRLLSDLAGQGLAILMISSELPEVLGMADRVLVVCEGRLTADIAREDATPENVMAAATRSAPTAPPTKEPVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEI7</accession>
    <name>A0A0Q8VEI7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Big_4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_11295</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 43 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894908.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52977">
        <property type="protein sequence ID" value="KRC52977"/>
        <property type="gene ID" value="ASE19_11295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1832114at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.115.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011081">
        <property type="entry name" value="Big_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006710">
        <property type="entry name" value="Glyco_hydro_43"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023296">
        <property type="entry name" value="Glyco_hydro_beta-prop_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07532">
        <property type="entry name" value="Big_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04616">
        <property type="entry name" value="Glyco_hydro_43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75005">
        <property type="entry name" value="SSF75005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359966" description="Big_4 domain-containing protein" evidence="4">
        <location>
            <begin position="37"/>
            <end position="1229"/>
        </location>
    </feature>
    <feature type="domain" description="Big_4" evidence="5">
        <location>
            <begin position="796"/>
            <end position="853"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF07532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1229" mass="127515" checksum="D4F95D9F068BBAAF" modified="2016-01-20" version="1">MNLTTTHPIRRLVVAGLAAAVGLAAAATGPAPVAHAEDTGLDTGLIGWWKLDEASGTVAADSSGHGRNGTVNGTAAWNAGEGFTFSGGSNSSGSYIKLPDNLLAGVDDLTVDFDVWVDPTLSGNWFMYNLGNSAVFPNGTGYLFTTNDSSGRYRSTIAEAAYSSEQSTSRPTKLQAGVWKHVTYTITGGVVGAPGSARLYEDGVLVASNTNLTTKPSLLGTPDGTTTLNQLGRSAYAGDLSFKGRLRDFRLYDRVLTATESAELAGDVVDPVIDADAAALTLGDTSAVVGNLALPAAGASTTTSVTWSSSDPARVSTSGVVARPAYGSPSAAVTLTATIVRGAETRTRTFDVTVLPEELDDAGKAQEAVAAVALVHADDVRGNLTLPTSGLHGSTLSWASYAPGVVTPTGEVTRPAYGGTAVDVTLTVTAHKGVATATRDVVVRVQPAPEAPDYEGYAFAYFAGESTDDGEKIYLGASRGNDPLDYDELNDGAPVLASTFGEKGLRDPFVIRSHEGDRFYLLATDLKIYGGGDFGTAQETGSKYLEVWESTDLVHWGNQRHVKVSSDFAGNTWAPEAFYDEAAGEYVVYWASALYPTTDSSGRDIGTQYQQMMYATTRDFVTFSAPQPWINVKRGAGKGMIDATIVKDGSTFYRLVKDEAYMIPRQERSTDLRATVTGSLPTTSSTPGWQLVKEKVGYGQANPWGGTFTGGEGPTVFRDNEDPDRWYLFIDQPSYHGGQGYLAFTTDDIASGSWTSVPTADLPSSPRHGTVLPVTQAELDTLRAGYQPELLVESVDDVNATTRVGTAPTLPAKVSATFGDGSTGQVAVEWDAIAPASYGVAGTFTVNGTVASGSADHPVATVTVTDAADPVVAVSSAADGDDGWWVSSPAAVSVTATDDTGVDSVDYSVDGGSWVSVDETTASFPVTGDGVHEVRARAHDVTGNTSAVVTGSVKVDTEAPVSRASRVGRTVTVRAADATSGVGAVQYRLDGGTWATYAAPFAVGDDAVDIEYRAVDRAGSEEQANTLVVPALGDELSPTAVVALAAADKLAFGTDLPISVRVSTPDGVATGSVRAIAGGTVLASANLADGRARIVVDTGRLSGLGAHTIVIRYDGDATHRVGEDQVPVTLTRARSSTSLVLKAPDRAGRGAVATVRVATSPSGVAVGKLGLVLSRAGKVVRRASVVVPASGRVTWRLPRLARGTWSVQATTASSPVAAGSGAKRVVTVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VER9</accession>
    <name>A0A0Q8VER9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_06825</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54185">
        <property type="protein sequence ID" value="KRC54185"/>
        <property type="gene ID" value="ASE19_06825"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="236"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="27499" checksum="30D9BAEB26778622" modified="2016-01-20" version="1">MEAPALLVERQGHVLILTINRPSARNAIDVDVTEALGDAMETADADPEVRVVVLTGAGDKSFCAGADLKAIARGDNLLPTTGKRAKWGFAGYASHHISKPTIAAVNGAALGGGTELVLASDIVVAAETAVFGLPEVKRGIIAGAGGVFRLPQQVSPKIANELIFTGEPVTAARALELGLVNRVVAADEVMATALGLADLIAANAPLAVQASKRVSQQLIDGVAVTEEHRWEISAAERAGVRESEDAKEGPRAFAEKRPPVWRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFG9</accession>
    <name>A0A0Q8VFG9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">HTH araC/xylS-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13315</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895790.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53328">
        <property type="protein sequence ID" value="KRC53328"/>
        <property type="gene ID" value="ASE19_13315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1622875at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032687">
        <property type="entry name" value="AraC-type_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12625">
        <property type="entry name" value="Arabinose_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="238"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="340" mass="37856" checksum="61D70A40FB10457A" modified="2016-01-20" version="1">MPATARTPNEPYLRAWVVSSFVQVIEELGGDPEDYERRFHVSLRVTDQGKEAIAAAPLLRLMEAAAQELSCPDFGIRVGIAQGQDSIGPVMVAALNCATAREAYQSSIRYLNGLFSAFDIALVDTPDGPRTVYTLRVPAPSRQFQEWSLAVTTKILPLVAGPSARLRGVYFSHPRLLEQEFYDGVFGCPVRFEERAYGVDYFDADMQRAIPRNNPEIRAIVSDYLDSIIASSGLTLEHQILALVRELLPTGGCTLDVIAEHHFVSVRTMQRRLAAEGVVFERLVDDVRREQALEYLADPDRSVQQIAGLLGYVEQSSFSHAFRRWSGTSPRAWRAAQRPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGC0</accession>
    <name>A0A0Q8VGC0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cytochrome</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14555</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896954.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53549">
        <property type="protein sequence ID" value="KRC53549"/>
        <property type="gene ID" value="ASE19_14555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="816674at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002397">
        <property type="entry name" value="Cyt_P450_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00359">
        <property type="entry name" value="BP450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0349">Heme</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="403" mass="43518" checksum="B4418E74ED028F65" modified="2016-01-20" version="1">MSSDLSAPAEYRPGGGAAWRAPWASYAALRDHDPVHHVVPDARPHHDYYVLSRHADVLAAAVDAASFSSGRGLTVEYDELERIGLVDNPPFVMTDPPVHTTFRKLVARGFTPRQVRELEPVVRAFAAERLSRIRDEGGGDVVAELFKPLPSLVVGHYLGVPVEDQARFDDWSSAIVAANVTGEGVAAAESAAGATMELMGYFSELVSRRRAEPGEDTVSQLVRADVELLEILAFVFTMVAGGNDTSTGALGGAVQLLADRPDQRALLAAEPSLVANAVEEFLRLTSPVQGLARTTTRDVELHGVVVPAGRKVLLLYGAGNRDPRRYGPDADELDVGRRPSQILSFGQGHHHCLGAAAARLQITVTLEELVRRIPDFAVDEDAVTWAPGPYVRRPLSVPLEVLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGC9</accession>
    <name>A0A0Q8VGC9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">4HBT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14305</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896998.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53505">
        <property type="protein sequence ID" value="KRC53505"/>
        <property type="gene ID" value="ASE19_14305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1989068at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="20"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="156" mass="17443" checksum="18A744B9A0E46246" modified="2016-01-20" version="1">MGATFECEIQARLRDVNLGGHVDNVEALRVLDEARLLFFRFAPLAGDDRPGLFRDVPAGIVELVGSQRIDYHAEMRFVPFQPFLVRMWVGHVGRSSLSVSYELRVAPDQPPAIVAESSVVFWDPSAGTSWTITDEVRTTLTAYSAEPVELRERPGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGK7</accession>
    <name>A0A0Q8VGK7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11160</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53629">
        <property type="protein sequence ID" value="KRC53629"/>
        <property type="gene ID" value="ASE19_11160"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.620.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025859">
        <property type="entry name" value="AurF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012348">
        <property type="entry name" value="RNR-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11583">
        <property type="entry name" value="AurF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="35913" checksum="EDA9785A1C6C0794" modified="2016-01-20" version="1">MSYQETLRVLSEASVHQHFDAFLDIAWDSPEFEVVPNDPRWVLPEVDSLGGTDWYKSLPLERQIEIGQYRLANIMKVGLQFEQVLIGGVMSHLIAMPNNRAEFRYSTHEVTEECHHTQMFQEGVNRIGVDVQGGPKWFVKIAPFLCLAGGPLPNIFFFGILAGEEPIDYLQKSVLRSGHELHPIVERVMQIHVAEEARHIGFAHSYLVERSKDYGTIQRFGLSLAYPIIMRALCDVIMKPTKQMQKDLGIPKSVMREVYWKSDKSSKLLRDTFGDVRMLADELGLMNKVSRQVWRLLGIDGPSSRFRSEPKSAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGN9</accession>
    <name>A0A0Q8VGN9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12220</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895065.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53138">
        <property type="protein sequence ID" value="KRC53138"/>
        <property type="gene ID" value="ASE19_12220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2146912at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="351"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="351"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="390" mass="42988" checksum="93F924C38D5D1E22" modified="2016-01-20" version="1">MSFDYFELSAEFDKIEEKLGYLKGNELAWEYLVAARDQLGGMAAPGDGYMPSEWWLEDCKFPVPGHEVDPTRWFQFTFWIPFDTIHDSPDPSKLGAANAKYMKDVAAGALQAWHNGASWASGLASYCRQVSDSFTRADATAICSALEDLHTYVTSDFSVNVLDDPYGIETIRTQWTGKSGTSFNTFYANYDGQIAQMAWASVQVAQTFAAAAHVIHGTQQGVLEFAKSIVKIIDQQLEAWAPIGPPPRDAPETPPWVADVTKIVTSGWKVLGHVPVVKDVKSQFDAVISAGTDVSNFVKTIADVTGTDLPTLSRTLDAADSDEIYKLLTDTLYDDYQQKYVAAMDALQTGTSIDPGDSGYQPPINTSDVLDDMPPPWFPRDDMPNEESMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGW7</accession>
    <name>A0A0Q8VGW7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12605</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895664.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53202">
        <property type="protein sequence ID" value="KRC53202"/>
        <property type="gene ID" value="ASE19_12605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1570162at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="15"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="213" mass="23460" checksum="C3C4AA7F650C387B" modified="2016-01-20" version="1">MLGEPKRSRIAERREATRREILDAAWAQAREVGIASITLRDIARAVGMQPPSLYTHFDSKNAVYDAMYAEAWAEYEAHALAQLGSVPEEPRAALHLASKVFFDFAVADLARHQLMNQRTIPGFEPSAEAYAPAVRVLDHGIAFLAAHGVTERADFDIWISLLGGLIDQQLANDPGGDRFARLLGRAIDMFADAVGLSPLPEKRPTRQKAGTRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGY2</accession>
    <name>A0A0Q8VGY2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MarR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12705</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895681.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53218">
        <property type="protein sequence ID" value="KRC53218"/>
        <property type="gene ID" value="ASE19_12705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1744037at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="23"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="169" mass="19292" checksum="4D4D19951A3108C5" modified="2016-01-20" version="1">MPEDWTDRHVARWRDHWLDIAFDDQVEAAFVRVGRIDRYLRQAKQRAVAEVGLTDFEYDTLHVLMIRDTPGSASPTELAGELDVSGAGMTGRLDGLEKAGWIRRIPSVDDRRRVIVEVTKAGIEVWRRAMDIRGEAENDLADALTERELATLNRLLKKVTVRSEERTHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH91</accession>
    <name>A0A0Q8VH91_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56853">
        <property type="protein sequence ID" value="KRC56853"/>
        <property type="gene ID" value="ASE19_03330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2161995at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="171" mass="19352" checksum="9D2BB38566897B44" modified="2016-01-20" version="1">MRWRVAGGAHRWQGTMGEMTRKSRRADRARRTKVLGRLRSAEEKQRHVELRLHDADPVAGFVVGLDDKHVELTRLGEPGTADGIEVVRLRDVRKVRRTPAPVAAPLRGRFAHLEEVEELAQAVVDEAFEEGWPYDAQGIDQLTELQRAIRELACVVRRVEETAPAPRPEKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH98</accession>
    <name>A0A0Q8VH98_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_06745</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53792">
        <property type="protein sequence ID" value="KRC53792"/>
        <property type="gene ID" value="ASE19_06745"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="3">
        <location>
            <begin position="45"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="409"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="436" mass="46139" checksum="21E18EACEAFD5B74" modified="2016-01-20" version="1">MKSVVFDSRVRTVVSFTLACLIGFGYLWVKSGGEIPLIADRGGDYRLTFEAADIKNLKEFGEVRIAGVRVGRVESTERDGDKVKVTLSIEDQASPLHEGANVRIGVKSLVGSSFVEVVDGDGEEMADGTHLDGASVTPAVDVDELLNTLDEPTRNHLSSALQSLGSATKGRGKDLDAVMTGLGHVGTEGRTVVDALAAQSGDLQKLSVEARLLLDALDAGQGQIVDLVGDAQQLTQVTADNQKKIEQTVRVLPSVVGNLDAAASSLSELSRPLTPIAADLRAASPFLSNALANLRPATRDLRALMPDLNSVLDKAPATLTKVAPFGETVRDLVPAADSTLADVQPMLSYLAPYGLDLGVLFANFGASFDEYAEDGIIPIRLTATAEGLGTVRGNPLQLVRHDRGGLMWNNPYPSPGDVDSPKPYGTGDYPRLESAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHC1</accession>
    <name>A0A0Q8VHC1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03545</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892907.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56890">
        <property type="protein sequence ID" value="KRC56890"/>
        <property type="gene ID" value="ASE19_03545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2014094at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04623">
        <property type="entry name" value="CBS_pair_bac_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044725">
        <property type="entry name" value="CBSX3_CBS_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0129">CBS domain</keyword>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="11"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="76"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="15597" checksum="56A1F710C809C78F" modified="2016-01-20" version="1">MRISDVLQSKSLKDVVTIRPDAGVRELLAALAEHNIGAVVVSGDGTTLDGIVSERDVVRTLHHDGTVINNVVSAIMTSDVRTCSPEDDLDEVLQVMTEGRFRHIPAASEGRVVGIVSIGDLVKHKIDQLEFERDQLDSYVHQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHE0</accession>
    <name>A0A0Q8VHE0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA helicase</fullName>
            <ecNumber evidence="3">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_04565</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the helicase family. UvrD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894327.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54755">
        <property type="protein sequence ID" value="KRC54755"/>
        <property type="gene ID" value="ASE19_04565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="137860at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013986">
        <property type="entry name" value="DExx_box_DNA_helicase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014017">
        <property type="entry name" value="DNA_helicase_UvrD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000212">
        <property type="entry name" value="DNA_helicase_UvrD/REP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038726">
        <property type="entry name" value="PDDEXK_AddAB-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014016">
        <property type="entry name" value="UvrD-like_ATP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070">
        <property type="entry name" value="PTHR11070"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12705">
        <property type="entry name" value="PDDEXK_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00580">
        <property type="entry name" value="UvrD-helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13361">
        <property type="entry name" value="UvrD_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51198">
        <property type="entry name" value="UVRD_HELICASE_ATP_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51217">
        <property type="entry name" value="UVRD_HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="9" id="KW-0234">DNA repair</keyword>
    <keyword evidence="7" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="10 13" id="KW-0347">Helicase</keyword>
    <keyword evidence="10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UvrD-like helicase ATP-binding" evidence="11">
        <location>
            <begin position="19"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="domain" description="UvrD-like helicase C-terminal" evidence="12">
        <location>
            <begin position="355"/>
            <end position="663"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC54755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1067" mass="115161" checksum="CF9EDA20A9F2B7BB" modified="2016-01-20" version="1">MNQAINTPEDLQRLMKAEFPPSPEQWTAITAPLSPVVVIAGAGSGKTTLMAARVVHLVLTGQVRPEEILGLTFTTKAAAELRQRVRAALTAAGVLDLKPAVDGEEVLEPTVATYNAYAAGLLTDHGLRIGHEPDTRVITDAARYQLGARAVDRYDGAVEKLSDHPPTVIQNLLALDGSMSEHLVGPDDVLAFDAAERKSFERAVAEEQAGKNRKTYVEASQKAIDVIDRRAELMGLVASYRNLKADLGLMDFSDQIALAARLAVAQPEVGRLERERFKVVLLDEYQDTSVAQATLLARLFGEGHAVMAVGDPNQAIYGWRGASVSNIINFPEVFPAAGGAAVPVLPLTVNRRSDTRILDVANTLAQPLMATYGDKVAVLRHGSSKPGSVRVKVFDTHLDELAWLAGEVQATHDAGTPWAKIAVLSRDNQHGEAVFDALTGADIPVEIVGLSGLVRLPEIATVVATLKLVQDVTDNESLLSLLAGPRWAIGPRDLRLLGLRAFELAGRGGRDDAAATVHDQLVAIADGIDPAEIPCLDDALADPGTAPYSPEALERFALLRDELRLLRSAVGEPLLDLVRRIVDVTGVDVELASSMSKAAAARRENLDLFVKAVADFQAVDGDVTLPALIAWLTAEDEAGNGLEVATPSGADSVKLLTVHRSKGLEWATVFCVGVGEGRFPSTQGRSLWCSSPSVLPAPLRGDADDLPQLAGHDKAALDAYRADTRAHEAEEELRLGYVAFTRPEHDLWVTSFLWGTRKSPYGPSSFQVAIRELCDGWGEPVDWLDKPEKGAANPFDAVDPSRPWPVEGVGAETARRLEAALRVRAADPAAGDDDLALDLVEAARVADWDAEIERLLAEARSDRSQRVEVPLPSSLSATALGRLRDDPESFARDLARPMPRQPAPAARFGTRFHAWVETRFGQQGLFEPDELEGRGDAGIDDDSDLQELITQFEAGPFGSREPTGVETPFALVLTGPSGARQVVRGRIDAVYTEDDGSFLVVDWKTNRRQDADPLQLALYRLAWAELHDVPLDRVRAAFHYVRTGDLVVHDDLPDRAGIEALLSDGPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHI3</accession>
    <name>A0A0Q8VHI3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_09610</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894617.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52679">
        <property type="protein sequence ID" value="KRC52679"/>
        <property type="gene ID" value="ASE19_09610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1833499at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="8"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="296" mass="31592" checksum="16E1FD71EAC38268" modified="2016-01-20" version="1">MNAQDTVASTENLTKVYGDRVAVDKVTMTVRRGEVYGFLGPNGAGKTTTLRMLLGLIRPTSGSAYATSPVGALIEGPGFFPYLSGRANLRTLARHRGFADAEVERVLERVDLAGRGDDRFKGYSLGMKQRLGVAAALMGDPELIVLDEPTNGLDPAGMADMRALVVDLARGGQTVLLSSHLLAEVQEICHRVGVIDDGRLLRESTVAELRGGVSIRVRATPEDAALAVALRLAGDEGVRRTDDGGMQLTLPPDAAPRVTRELVAAGVDVHEITAAERSLEEVFFEMTSGHEKELSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHK5</accession>
    <name>A0A0Q8VHK5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07255</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895304.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53872">
        <property type="protein sequence ID" value="KRC53872"/>
        <property type="gene ID" value="ASE19_07255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="384611at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="2">
        <location>
            <begin position="13"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="531" mass="56170" checksum="8764F0B2BDC27815" modified="2016-01-20" version="1">MADQPNGPVTVPAQAGHMLERARWAARAFASYSHGDVERIVRAVADVAHAHAEKYAEWAVRETGFGVVEHKVRKNRACSRGLLDTYAGQDFVTPRVRIDDKIVEVPRAAGVVLALTPSTNPVATVFFKVILALMTRNAVVVSPHPMARECCHDAAQLLARAAVEAGAPDGIVQSVAEPTIPLVEALMGDARTNVILATGGTGVVRAAYGSGNPAIGVGPGNVPVLVDSTADIRTTAQRLVESKAFDNSVLCTNESVLIVEEAVADKLVREMERVGAAVLGADDAQRLRDFMFPVGRLNVDVVGRDASWIAQQAGIRVGPRTKVLVAPFDVAVPEEPLTHEKLSPVLGMIRVPDAATGIATARAIVRIAGAGHSAAIHSSDPATVMRYAADVPVLRVSVNVGNSTGSSGLDTNLAPTMTIGTGFVGRSALGENLQPKHLVNWTRIAYNSDPAEAMPAYAGLSPWHDHRDPVPSYPLASNDDRAPRQAPSNVDALIDRIGARTASNGSSADDAAFREQVRRLVVEELSHLIKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHM1</accession>
    <name>A0A0Q8VHM1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07345</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53889">
        <property type="protein sequence ID" value="KRC53889"/>
        <property type="gene ID" value="ASE19_07345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1931172at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="332" mass="37190" checksum="1B53B9C39F6CC5FE" modified="2016-01-20" version="1">MALVVFNRPHLTEQTLAAIREAAPQQLYVIADGPRADRPEDAELCAATRALLDAVDWPCEVHRRFAPENLGLEANVELGLDWLFSQVESAIVLEDDCHPDPSFFRYADELLAHHRDDPRIWQVSGSGMGVPERLFGGDSYAYTAWASVWGWATWADRWQRHRAIFTRDHAPSEAPVRTVAPTQQPGHLVTRSGEQHFADAARSDDTITHGWDKHWWITMLTLGGLAISPSRNLVENVGWGADATHGAAEGKRDHGAAAMDFPLRHPAQVAVNVEVERELELVLSRVGGRFARVARRMVRSPRLRRAARTAVNSRPAMAVQRFVSRSRDRVSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHR5</accession>
    <name>A0A0Q8VHR5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 10">Threonine synthase</fullName>
            <ecNumber evidence="6 10">4.2.3.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_03275</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 10">Catalyzes the gamma-elimination of phosphate from L-phosphohomoserine and the beta-addition of water to produce L-threonine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>H2O + O-phospho-L-homoserine = L-threonine + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10840"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57590"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="EC" id="4.2.3.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 10 11">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4 10">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 5/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 10">Belongs to the threonine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.1" evidence="6 10"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892860.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56843">
        <property type="protein sequence ID" value="KRC56843"/>
        <property type="gene ID" value="ASE19_03275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="428821at2"/>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004795">
        <property type="term" value="F:threonine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000634">
        <property type="entry name" value="Ser/Thr_deHydtase_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004450">
        <property type="entry name" value="Thr_synthase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026260">
        <property type="entry name" value="Thr_Synthase_bac/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038945">
        <property type="entry name" value="Thr_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00260">
        <property type="entry name" value="thrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00165">
        <property type="entry name" value="DEHYDRATASE_SER_THR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10" id="KW-0456">Lyase</keyword>
    <keyword evidence="9 10 11" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10" id="KW-0791">Threonine biosynthesis</keyword>
    <feature type="domain" description="PALP" evidence="13">
        <location>
            <begin position="29"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="11">
        <location>
            <begin position="191"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="321"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="12">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003648"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00018679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR038945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR038945-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR038945-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC56843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="355" mass="36746" checksum="B85E29DCCA06BF4D" modified="2016-01-20" version="1">MSKANGQWRGVIEEYRALLDIPQDTPAVTLREGGTPLVHSGWLSGLTGAEVWLKVEGNNPTGSFKDRGMTTALSVAVHEGAQAVVCASTGNTSASMAAYAAKAGVTPIVLVPEGKISAGKMAQAVLHGSQVIQVRGNFDDCLRMAREMAWKYPVALVNSVNPHRLEGQKTAAFEIVDFLGDAPDFHLLPVGNAGNISAYWLGYTQYAALGRATRKPVMRGFQAEGAAPLVTGEPFPDPETRATAIRIGNPASWKLAEAARDESGGRFAAVSDVQILAAQKELASKDGVFVEPASAAGVAGLLSELAAGETYAGTTVAITVTGHGLKDIATALDGLVLPETVVDADVDAAAAAAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHS8</accession>
    <name>A0A0Q8VHS8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_05850</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894106.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54969">
        <property type="protein sequence ID" value="KRC54969"/>
        <property type="gene ID" value="ASE19_05850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="923655at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110165">
        <property type="term" value="C:cellular anatomical entity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04077">
        <property type="entry name" value="Peptidases_S8_PCSK9_ProteinaseK_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034193">
        <property type="entry name" value="PCSK9_ProteinaseK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023827">
        <property type="entry name" value="Peptidase_S8_Asp-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022398">
        <property type="entry name" value="Peptidase_S8_His-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015500">
        <property type="entry name" value="Peptidase_S8_subtilisin-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010259">
        <property type="entry name" value="S8pro/Inhibitor_I9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037045">
        <property type="entry name" value="S8pro/Inhibitor_I9_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05922">
        <property type="entry name" value="Inhibitor_I9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00723">
        <property type="entry name" value="SUBTILISIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="SSF52743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00136">
        <property type="entry name" value="SUBTILASE_ASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00137">
        <property type="entry name" value="SUBTILASE_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0720">Serine protease</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360053" evidence="6">
        <location>
            <begin position="28"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="domain" description="Inhibitor I9" evidence="8">
        <location>
            <begin position="41"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S8" evidence="7">
        <location>
            <begin position="137"/>
            <end position="372"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003355"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF05922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="39473" checksum="3BE4AC0229170B97" modified="2016-01-20" version="1">MSRILGFIAACALALAGLAAVPTPTQAAPAQAGAAGLLDVIVTLKPGTDARSAATSLVARRGGTVSHVYSHALTGFAATLTDSLLTVLRGDARVQSVELDRTVHINDTQTPTGSWGQDRVDQRNLPLDNAYTYGATGAGVDVYVVDTGIQTTHPDLGGRAVSGTDTIDNDGVADDCNGHGTHVSGTIGGTRYGLAKGARLIGVRVLDCSGSGSNSAVIAGLDWVVANHQAGRPAAANMSLGGGASTALDAAVQRVIADGVTMAVAAGNENADACTKSPARVPAALTVAASDRNDARASFSNRGTCVDLFAPGVDITSAWLNGGTNTISGTSMASPHVAGAAALYLQTHPSASPAAVGDAIVAATTKGKVTGTAKSCVLLIICSPATPANHLLYTGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VII6</accession>
    <name>A0A0Q8VII6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08725</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895560.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54128">
        <property type="protein sequence ID" value="KRC54128"/>
        <property type="gene ID" value="ASE19_08725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275789at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="267" mass="27603" checksum="813BBAD154CB39B3" modified="2016-01-20" version="1">MTAIVTEGPVLLDIADGIARIRLNRPEASNAVDADLLRVLHGVVLRCHAEPGVRVVVLSGEGRNFCAGGDVKTFLGKGEGLPDYLREATAWLQLATAALIQLKAPVIAQVQGFAAGGAGFGFVCAADLVVAAEGSKFFSGAVRVGMAPDGGTTVTLARIVGLRRALDILLTNPTLTATEARDLGIVSRVVPDEELAAAVDALAADLAAQPPLGLAATKRLVWDGLGATVAERMPEEARVVSELSGTADSLEALSAVIERRPGVYRGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIJ5</accession>
    <name>A0A0Q8VIJ5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23805</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917926.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57358">
        <property type="protein sequence ID" value="KRC57358"/>
        <property type="gene ID" value="ASE19_23805"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01590">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Histidine kinase" evidence="2">
        <location>
            <begin position="188"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="397" mass="41927" checksum="51CD0A18A248A009" modified="2016-01-20" version="1">MSSPTADEAIARYRALDEPGGRDLQALAELAALVCGVPNSAINLITRDHQHQIAAAGIDPSVCSREDSMCAVVLDDTRTVVAPDASADPRFATNPFVSGEIDTVRFYASAPLITPDGTTIGRLCVFDSEPHELAAERADVLQVVAQRVVDVLELRLRGRQLEQSLVELTRTQDELTRSNELLSLFAGQVSHDLRSPLTAILANTELLADEPAVTGDPAVAELVGATHQAGQRMAGMISTILDYARSGAVLRPTEVALDEVLSHVLDDLAPAIGRRSAVVRREPLPQVVGDATQLYAVLLNLVSNAVKFTPPDRAPEVAVTAARGDGEWRVAVTDNGRGIPATGRDTVFVLHARGDSSVEGSGIGLATARRAVEAHGGRIGIDDAPGGGTTIWFTLPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIK8</accession>
    <name>A0A0Q8VIK8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23925</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894008.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57374">
        <property type="protein sequence ID" value="KRC57374"/>
        <property type="gene ID" value="ASE19_23925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="35275at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022307">
        <property type="entry name" value="Helicase_put_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018973">
        <property type="entry name" value="MZB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09369">
        <property type="entry name" value="DUF1998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03817">
        <property type="entry name" value="DECH_helic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="1">
        <location>
            <begin position="77"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="2">
        <location>
            <begin position="300"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="788" mass="84471" checksum="CC34B37F9D68FFF2" modified="2016-01-20" version="1">MTAEPRTLPPVGRRDPAAVLARLTALPGRADRLTHLEQLPARAAVTAAWPDWTDPALLASYTARGVGRPWAHQVAVAEAAHRGEHVVVATGTASGKSLAYLLPTLSDIRAARGPRGQRGASVLYLAPTKALAHDQWAAIRALGLDVRTSTHDGDSTPEEREWTRDHAEYVLTNPDMLHRSLLPGHERWTPFFRSLRYVVVDECHHYRGVFGAHVAQVLRRLRRVCASHGASPTFILASATVADPDVTARRMTGLDVTTVTADGSPRGELAVAMWEPPLTSYQGENGAPVRRPATAETADLLADLVIEDVRTLAFVRSRNGVETVARRAGELVAEVDPSLAGRVDSYRGGYLPEERRDLEDALRSGRLLGMAATNALELGIDVSGLDAVLVTGYPGTRAAFWQQVGRAGRDGGGALGMFVARDDPLDTYLVHHPEALLGRPVEGTVFDTDNPYVLGPHLCAAAQELPITVVDFELFGPRTREVLASLVERGLLRRRPAGWFWTERSRAADLADIRSTGGQQVSLVEAGTGRVVGTVDGGRAHGTAHTGAVYLHRGETWLVDSLDLEEGVATMHRTDVDHTTSARDVTEITIVAEAEHATWGPCRVSFGQVEVTSQVTSYLRRRARTGEVIDETPLDLPPRTLATTAVWWTVPDAVLAPMLERAGLEAADLPGAAHAAEHCSIGLLPLFATCDRWDIGGVSTARHPDTGVLTVFVHDGHPGGAGFAERGFRTAAAWLRATRATIAACECVSGCPSCIQSPKCGNGNDPLDKDGAIALLDALLAEAPVDVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJI0</accession>
    <name>A0A0Q8VJI0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">VanZ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13090</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895749.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53287">
        <property type="protein sequence ID" value="KRC53287"/>
        <property type="gene ID" value="ASE19_13090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1262421at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006976">
        <property type="entry name" value="VanZ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04892">
        <property type="entry name" value="VanZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="129"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="168"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="206"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="310"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="VanZ" evidence="2">
        <location>
            <begin position="51"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="361" mass="38357" checksum="2BD6404256B13E30" modified="2016-01-20" version="1">MSDQLLNGVIATVLGTGVAVVLLLPVAAVQYRRDGRLEARDLAILLSGAVYGLALWTYTLLPMPVDGDFVCAGRQTTPLETIGAIAWRDAGTRDGMAALVRDPAFLQVALNVLLFVPLGYYVRQVLRRGVVVATLLGLATSLLIETTQATGVWHLYDCAYRLFDVDDLIINTLGATAGSLVAAVFVRRQRPEVVWPTSLTAGRRFVGMTCDVLFVVLLGAALVVAYRGVHLYLLETSYEDLQATPQRILQWGVPGALEVLAVLLAGRTVGEWVVAVRAVAGRVPAPVARVVKLLTGIGPFLALAAIPGGWTVPVLGAFALVSAVAVLRSRSRRGLSHALAGMELELVVPASARTPVEPVSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJW7</accession>
    <name>A0A0Q8VJW7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">MATE family efflux transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_13805</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897087.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53415">
        <property type="protein sequence ID" value="KRC53415"/>
        <property type="gene ID" value="ASE19_13805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1415498at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044644">
        <property type="entry name" value="DinF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42893">
        <property type="entry name" value="PTHR42893"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="48"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="91"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="129"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="160"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="193"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="236"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="278"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="321"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="355"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="388"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="416"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="449" mass="44800" checksum="91C1FA9A4B5FCB2E" modified="2016-01-20" version="1">MSSRALDREIARLAVPAFLALVAEPLFLLGDAAVVGHLGTRELAGLGLAGTVLTTVVGLCIFLAYGTTAGVARQLGAGHRRAALEQGIDGLWLAVAIGVPVTLGTSLLAGPLVTVFGASAGVEDAATEYLRIAGAGITPLLLVLASTGVLRGLQDTRTPLVVAVVGNAANLALNLTLVYGAGPAPRLELAGSALGSVLAQVGMAVALVAAVVRAARREGAPLRPHPAGIRAAGRAGVPLLVRTLTLRAALLVTTWAVVLAAGEASGADDAVPIATHQLAFTIWGFLAYVLDAIAIAAQAITGRHLGAGDVAATRAVTGRMVGWGIRSGIVTGLLLAASSPWLGALFTPDGAVRDALVPVLLVAALAQPAAGVVFVLDGVLIGAGDGRYLALAGLAVLGGYAPLVLLTSALGAGLTGVWAVFGALFMGGRLLTLVRRARSDAWLVTGAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKR5</accession>
    <name>A0A0Q8VKR5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05045</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894248.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54833">
        <property type="protein sequence ID" value="KRC54833"/>
        <property type="gene ID" value="ASE19_05045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1450979at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="431" mass="47078" checksum="DFDC688AA62ACDB3" modified="2016-01-20" version="1">MTRTVYLHVGSPKSGTTYLQRILDGNRRKLADAGVLVVGRNQGSRVQAALQVRQDPRWEKLPADRQDQWGRLVREIRDWQGDTAILSYELFSAASAEQAAAAIADLEGIDVHVVITSRDLARSVPSAWQERLKFGLTTPLEEWQPPKAEAPRSEWGWRTTDPTSVAERWGAGLAADRVHVVTVPRSAGDPTELWRRFAAACGIDGIDVDLALPRVNESLGAVGAELLRRVNSRLGAPLDNSRERARWLRDTLAHRVIAQRDDEPLGMTDRQFAEATERAEAAIAALAASGHVIHGDLEDLRATRPTGRLSGDVADAEVLEAALDALLALLLAWRSDATASPRRAGTPAAEAPAGGRLRRIATRVTSPAVDRADDRLRERIEELEAEVAAGRALHQRVAMLQDVVTELLLPADVQDGTVTVAALRKYRAESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL32</accession>
    <name>A0A0Q8VL32_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF4129 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_05515</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894169.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54912">
        <property type="protein sequence ID" value="KRC54912"/>
        <property type="gene ID" value="ASE19_05515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1961432at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025403">
        <property type="entry name" value="DUF4129"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13559">
        <property type="entry name" value="DUF4129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="86"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4129" evidence="3">
        <location>
            <begin position="163"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="244" mass="25488" checksum="5269F787F384C454" modified="2016-01-20" version="1">MGKGSRDLARPGLLVAGLLVLLLCVLATASGEGVTWTGFERDSPTSTGDADRPDDEVEQVDDVRDEPASSSDRSGGPTGLLLPGRAFAAAFVVAALLLVLAVLLRLRLSLRTNRPREGRVLSGFDPAAPALAAVEDETALAGALADGLAGLGTGSARNSIVAAWLRLEAAAESERFHRDPADTPTEFVTRVLASYPVDGDAIDRLAALYREARFSEHPLGEPQRDEAAACLGTLLAGLPARSRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLD7</accession>
    <name>A0A0Q8VLD7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Peptidyl-prolyl cis-trans isomerase</fullName>
            <ecNumber evidence="4">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_05990</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 3 4">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the FKBP-type PPIase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894082.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54992">
        <property type="protein sequence ID" value="KRC54992"/>
        <property type="gene ID" value="ASE19_05990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1861282at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001179">
        <property type="entry name" value="PPIase_FKBP_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00254">
        <property type="entry name" value="FKBP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50059">
        <property type="entry name" value="FKBP_PPIASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0697">Rotamase</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360183" description="Peptidyl-prolyl cis-trans isomerase" evidence="6">
        <location>
            <begin position="25"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="PPIase FKBP-type" evidence="7">
        <location>
            <begin position="93"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="25"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC54992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="181" mass="18672" checksum="D8A4B29CE0A02AB5" modified="2016-01-20" version="1">MRTPVRLVAAAVLSLSVLAMSACSDSGDEKAEDSTSSNSPDASTGGECTADDIEVTGDFGATPTITIPDDCTPPATLLTKDLVTGSGPAAKEGDSVETNYHLMTWSNKQVLDSSFERGQTFVVEPLGQAQVITGWNQGLVGIQKGTRRLLVIPPDLGYGAGGNGIAPNETLVFVIDGVSIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLF8</accession>
    <name>A0A0Q8VLF8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Aminotransferase V</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_06175</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894435.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55025">
        <property type="protein sequence ID" value="KRC55025"/>
        <property type="gene ID" value="ASE19_06175"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024169">
        <property type="entry name" value="SP_NH2Trfase/AEP_transaminase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000524">
        <property type="entry name" value="SPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_5" evidence="3">
        <location>
            <begin position="41"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000524-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC55025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="407" mass="43122" checksum="6A0AA870479152B3" modified="2016-01-20" version="1">MSIDEIAPPPRLLMGPGPISVDPRVLRAMAAPLVGQFDPFMTTTMNETMALYREVFATGNEQTFLVDGTARAGIEAALVSLVEPGDRVLVPVFGRFGHLLAEIAGRCGAEVHTIEVPWGRVFAPEQVAAAIEEVRPKVLACVQGDTSTTMCQPLAEIGALCREHDVLLYCDATASLGGNEFRADSWRLDIATAGLQKCLGGPSGSAPITLSPRAVEIVNGRRHVEAGIREASDEARGRVIGSNYLDLAMLMDYWGPRRLNHHTEATSMLYAARECARLLAAEGIDAAVERHALHGRAMLEGVQGLGLGVFGDLAHKMNNVVAVEIPEALGAAGGDAVRGRMLDDFGIEIGTSFGPLHGKVWRIGTMGFNARKDAVLTTLAALEQVLRSSGVAVPAGGGVEAALAVYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMR6</accession>
    <name>A0A0Q8VMR6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Peptidyl-prolyl cis-trans isomerase</fullName>
            <ecNumber evidence="4">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_03625</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 3 4">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the FKBP-type PPIase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892922.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56905">
        <property type="protein sequence ID" value="KRC56905"/>
        <property type="gene ID" value="ASE19_03625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1861282at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061077">
        <property type="term" value="P:chaperone-mediated protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000413">
        <property type="term" value="P:protein peptidyl-prolyl isomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044609">
        <property type="entry name" value="FKBP2/11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001179">
        <property type="entry name" value="PPIase_FKBP_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45779">
        <property type="entry name" value="PTHR45779"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00254">
        <property type="entry name" value="FKBP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50059">
        <property type="entry name" value="FKBP_PPIASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="PPIase FKBP-type" evidence="5">
        <location>
            <begin position="34"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="123" mass="12926" checksum="F068BBE2D865E21E" modified="2016-01-20" version="1">MSQKPEIDFVDPTPPTDLVITDLTVGDGAEATSGSTLSVHYVGVALSTGEEFDASYNRGAPLDFRLGIGQVIQGWDTGVQGMKVGGRRQLVIPPHLGYGDRGAGGVIKGGETLIFVVDLLEVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN07</accession>
    <name>A0A0Q8VN07_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">3' terminal RNA ribose 2'-O-methyltransferase Hen1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_04155</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893018.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57001">
        <property type="protein sequence ID" value="KRC57001"/>
        <property type="gene ID" value="ASE19_04155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="957193at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008171">
        <property type="term" value="F:O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1610.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024026">
        <property type="entry name" value="3'-RNA_MeTfrase_Hen1_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026610">
        <property type="entry name" value="Hen1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024740">
        <property type="entry name" value="Hen1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038546">
        <property type="entry name" value="Hen1_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013217">
        <property type="entry name" value="Methyltransf_12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21404">
        <property type="entry name" value="PTHR21404"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12623">
        <property type="entry name" value="Hen1_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08242">
        <property type="entry name" value="Methyltransf_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04074">
        <property type="entry name" value="bacter_Hen1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Hen1_L" evidence="9">
        <location>
            <begin position="1"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="domain" description="Methyltransf_12" evidence="8">
        <location>
            <begin position="292"/>
            <end position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC57001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="470" mass="52096" checksum="F6BFE17CAD00F080" modified="2016-01-20" version="1">MLLTLTTTHQPATDLGYLLFKHPDRVQQFRQSFGTVTVLYPEATEERCTVALLLDVDPVRLARSRARNAPDFSLAQYVNDRSYAASSLLGVAMADVFSTARSGRCDARQDLADSAIPLEITIPVLPCRGGAEIAHRLFEPLGWSVEAEPIPLDEAFADWGDSRYVRLRLTGVVRLADALNQLHVLLPVLDESKHYWQGPDEVDKLMRSGEGWLAAHPDAQLITRRYLGRRGGLTRVALARLAELGDEVEETIEPADDEEALQPAEKRVPLNTQRHEAVHAVLLELGARSVIDLGCGPGQFLDLLVRTPAFTRVAGSDVSTRSLQHAARRLHVDRMSERQAERVQLFQGALTYEDERYAGFDAAVLMEVVEHVDPPRLAALEHVVFGAARPGAVVVTTPNGEYNVLYEGLVGLRHPDHRFEWSREEFVAWCEHVTASYPYAVEVRGIGALDGTLGTPTQMAVFTRKEATDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN21</accession>
    <name>A0A0Q8VN21_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22790</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892590.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58894">
        <property type="protein sequence ID" value="KRC58894"/>
        <property type="gene ID" value="ASE19_22790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1206711at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022183">
        <property type="entry name" value="DUF3710"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12502">
        <property type="entry name" value="DUF3710"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="200"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="219" mass="23059" checksum="90B16A18163090EE" modified="2016-01-20" version="1">MRLRRKGEAAAAEAAADESAHDDAADADATTEPGNAGPYDADELPDDGLARLDLGSILVAPLPDRELRVQVDEKSGEVRAVLLATDAGALELRAFAAPRGGDLWSDIRPQIAADAARRGGTATEREGRFGTELVCEVQVNRADGQSGTQTSRVIGVNGPRWLLRATFLGEPAREPEAATEWEQAITQLAVRRGAHAMPVGEQLPLNLPDGAQPKAVDAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN24</accession>
    <name>A0A0Q8VN24_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58906">
        <property type="protein sequence ID" value="KRC58906"/>
        <property type="gene ID" value="ASE19_22855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="190667at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008969">
        <property type="entry name" value="CarboxyPept-like_regulatory"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49464">
        <property type="entry name" value="SSF49464"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360193" evidence="1">
        <location>
            <begin position="39"/>
            <end position="881"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="881" mass="91355" checksum="17247CBCDD9425E5" modified="2016-01-20" version="1">MASMRPRLGSRPAALFSSLLGLLLAVAVVPMLAAPAQAADITIQGTITGLNGVKVEGVFVEANDANGAPLEPRRYAYTQADGTYSFTVPVAGTYKIDIECWGAYACAQDYAPEPTITQAISSTVTINATLERWGRITGTVKKNSVATAWPNGLVEASNDARQYWSSYPGVPVAPNGTFTIEKVAPGTVRVDGDESWDAEPFLTAGQDVTVPAGGTATIDLAVTDWRGSYARAVQPDGTPLPNIRFNIFSRPLGGGAWDDGIQAGPLLTNASGRMKWRVTDTTREYAICLYDDYLEPGTTPPAERHLSRCLGNAATRDTATLWTPSAATPNVKQDIVLPYAFAAAPVPTISGTAAVGATLTAVPGTWTPTDATLSYAWFRSGTTAPIGTGPTYQLVEADLGRTITVRATAVRTNYVTTSKTSAATTAVSAGAFTSTPAPTVAGTQKVGSTLTASTLPWTPAATTSTYEWFRSGVVAPVGTDATYTLLPADLGKTLTVKVTGVRTGYATTSRTSAATAVIGLGAFTSAPVPTISGTTTVDRTLTATAGTWTPAATTTTYQWLRGDTPIAGATQATYQLAAADAGQTIKVAVTGARDGYVQTTKTSVATALVAQAAFTTVPTPTVTGTAAIGATLTADAGTWVPTPDTTTYEWFRGGVAIPDATGPTYQLVAADAGQAITVKVTGARAGYVTAADTSVPTAAVLAGFTTAPTPTITGTRAAGSTLTANAGTWAPAPTTTSYQWLRNGVAIANATSRTYRLTTADGGQRIAVRVTAARDGYATTAKTSTATGAILRLFSKAPAPRVTGTLRVRSLLTAVLGTWSPTPSTTRYQWYRNGVAIRGATNRTYRLVAADKGRRIKVIVKRGRTGYVTTTRSSVATTAIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPQ5</accession>
    <name>A0A0Q8VPQ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00060</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896865.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59477">
        <property type="protein sequence ID" value="KRC59477"/>
        <property type="gene ID" value="ASE19_00060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1546927at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="135"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="198" mass="21553" checksum="37A3C4A9579A3059" modified="2016-01-20" version="1">MLWLRPVKRTPPWPALWPALVLALTVGQLAVATFVPGIDQFEGKAFGARLVAYPVMMLVVPAVWWLHARRTGSGGAVPWGAFALVMLPFLIDVTGNSLDLYDAVVWWDDANHYANWALLCGGIGLLLADHLGPPWVVVVAVTGIGAVLAIGWELGEWFTFIRQGTELDTAYEDTLGDEVLGTLGAFTSAVLMGWRARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPX9</accession>
    <name>A0A0Q8VPX9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00540</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896783.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59557">
        <property type="protein sequence ID" value="KRC59557"/>
        <property type="gene ID" value="ASE19_00540"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="122"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="277" mass="29716" checksum="E06783838A127135" modified="2016-01-20" version="1">MSNTLAPWLLPDGYGRPALAALLREGSLVTEAGRFAVRRGAGHRVRRRTPYAARTAARATEPVLLIPGFLAGDWTLNAMAGELRARGFRTYRSQIRANIGCTLNSALALEARIEEIAERRDSRVQLVGHSLGGMISRGLAARRPDLIAGIVTMGSPMRAPAAHHAVLTRGVRVLNRLSDAGFSTLMSEDCVAGECAHLSFTESQEPLRPDVAMTNVYSRRDGIVDWKACIDPAGEAVEVRASHIGMAVDPRVIDVVSASLLRQSGAFATPLSVVETA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ68</accession>
    <name>A0A0Q8VQ68_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_00680</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896760.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59580">
        <property type="protein sequence ID" value="KRC59580"/>
        <property type="gene ID" value="ASE19_00680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="445854at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003714">
        <property type="entry name" value="PhoH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02562">
        <property type="entry name" value="PhoH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13638">
        <property type="entry name" value="PIN_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00670">
        <property type="entry name" value="PINc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <feature type="domain" description="PINc" evidence="6">
        <location>
            <begin position="15"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="443" mass="47883" checksum="FD94037261ADFFAE" modified="2016-01-20" version="1">MGSIHDGAQASTQRRTYVLDTSVLLADPAALRRFEEHEVVLPVVVITELEAKRHHPELGYFARSALRSLDELRVSHGRLDTPVPVGEDGGSVRVELNHTDAASLPSGFRLGDNDTRILAVARNLADEGHQVTLVSKDLPMRIKASAVGLDAEEYRGEAISDSDTGYSGMAEVEVAAADLDELYDDGTLDLADARELPCHTGLVLLSERGTALGRVGPDKQVHLVRGDREAFGIHGRSAEQRIALELLLDPDVGIVSLGGRAGTGKSALALCAGLEAVMERQQHKKVVVFRPLFAVGGQELGYLPGSESEKMSPWGQAVFDTLGALTSRDVVDEILDRGMLEVLPLTHIRGRSLHDSFVIVDEAQSLERNVLLTVLSRIGANSKVVLTHDVAQRDNLRVGRHDGIVAVVEKLKGHPLFSHVTLTRSERSPIAALVTEMLENVVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ79</accession>
    <name>A0A0Q8VQ79_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA helicase</fullName>
            <ecNumber evidence="2">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_00785</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RAD25/XPB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896747.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59594">
        <property type="protein sequence ID" value="KRC59594"/>
        <property type="gene ID" value="ASE19_00785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377818at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032438">
        <property type="entry name" value="ERCC3_RAD25_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032830">
        <property type="entry name" value="XPB/Ssl2_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16203">
        <property type="entry name" value="ERCC3_RAD25_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13625">
        <property type="entry name" value="Helicase_C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="5">
        <location>
            <begin position="190"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="6">
        <location>
            <begin position="399"/>
            <end position="550"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="557" mass="61568" checksum="7F7AD998DB34B0AA" modified="2016-01-20" version="1">MSDGPLIVQSDKSLLLEVDHEQAAECRKAIAPFAELERSPEHIHTYRLTPLGLWNARAAGHDAEQVVDTLLSYSRYPVPHALLVDVAETMSRYGRLRLEKHPTHGLVLASNDRPVLEEVLRAKKVAGMLGNRLDDDTVAVHPSERGNLKQALLKIGWPAEDYAGYVDGEAHPIELAEDGWTLRTYQAEAAESFWHGGSGVVVLPCGAGKTIVGAAAMAEARATTLILVTNTVSARQWKDELLRRTSLTEDEIGEYSGTVKEIRPVTIATYQVVTTKRKGVYPHLELFDARDWGLIVYDEVHLLPAPIFRMTADLQARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGWIAPADCIEVRVSLPDASRMAYATSEPEERYRLAACTPEKVKVVRDLVTRHAGQPTLVIGQYLEQLDELAEALDAPMITGQTPVKERQRLFNGFRSGEIGLLVVSKVANFSIDLPSAEVAIQVSGSFGSRQEEAQRLGRLLRPGEPGPDGERKIAHFYTIVSRDTVDAEFAQNRQRFLAEQGYAYRIVDADDLGAPSADQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ94</accession>
    <name>A0A0Q8VQ94_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cupin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896857.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59483">
        <property type="protein sequence ID" value="KRC59483"/>
        <property type="gene ID" value="ASE19_00110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1928636at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="125" mass="13716" checksum="957D431ACA2B0DAA" modified="2016-01-20" version="1">MSTDQHHQQHTEQKSFSTPDETRSFERGVAEILEVAGTPIGRLTLQPGWRWSEHVKPIAGTDSCEAPHFQYHVSGRLGILMDDGTELVAGPGDVTSLPQGHDAWVIGDEPVVVVDWWGASSYAKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQC5</accession>
    <name>A0A0Q8VQC5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Protein-glutamate methylesterase/protein-glutamine glutaminase</fullName>
            <ecNumber evidence="3">3.1.1.61</ecNumber>
            <ecNumber evidence="3">3.5.1.44</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">cheB</name>
        <name evidence="8" type="ORF">ASE19_01370</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>H2O + L-glutaminyl-[protein] = L-glutamyl-[protein] + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:16441"/>
            <dbReference type="Rhea" id="RHEA-COMP:10207"/>
            <dbReference type="Rhea" id="RHEA-COMP:10208"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29973"/>
            <dbReference type="ChEBI" id="CHEBI:30011"/>
            <dbReference type="EC" id="3.5.1.44"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>[protein]-L-glutamate 5-O-methyl ester + H2O = H(+) + L-glutamyl-[protein] + methanol</text>
            <dbReference type="Rhea" id="RHEA:23236"/>
            <dbReference type="Rhea" id="RHEA-COMP:10208"/>
            <dbReference type="Rhea" id="RHEA-COMP:10311"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17790"/>
            <dbReference type="ChEBI" id="CHEBI:29973"/>
            <dbReference type="ChEBI" id="CHEBI:82795"/>
            <dbReference type="EC" id="3.1.1.61"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="3">Contains a C-terminal catalytic domain, and an N-terminal region which modulates catalytic activity.</text>
    </comment>
    <comment type="PTM">
        <text evidence="3">Phosphorylated by CheA. Phosphorylation of the N-terminal regulatory domain activates the methylesterase activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the CheB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.61" evidence="3"/>
    <dbReference type="EC" id="3.5.1.44" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59701">
        <property type="protein sequence ID" value="KRC59701"/>
        <property type="gene ID" value="ASE19_01370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1655418at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000156">
        <property type="term" value="F:phosphorelay response regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008984">
        <property type="term" value="F:protein-glutamate methylesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050568">
        <property type="term" value="F:protein-glutamine glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018277">
        <property type="term" value="P:protein deamination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006482">
        <property type="term" value="P:protein demethylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16432">
        <property type="entry name" value="CheB_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00099">
        <property type="entry name" value="CheB_chemtxs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008248">
        <property type="entry name" value="CheB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035909">
        <property type="entry name" value="CheB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000673">
        <property type="entry name" value="Sig_transdc_resp-reg_Me-estase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01339">
        <property type="entry name" value="CheB_methylest"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000876">
        <property type="entry name" value="RR_chemtxs_CheB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52738">
        <property type="entry name" value="SSF52738"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50122">
        <property type="entry name" value="CHEB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="6">
        <location>
            <begin position="5"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="CheB-type methylesterase" evidence="7">
        <location>
            <begin position="156"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="active site" evidence="3 4">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <feature type="active site" evidence="3 4">
        <location>
            <position position="195"/>
        </location>
    </feature>
    <feature type="active site" evidence="3 4">
        <location>
            <position position="291"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="3 5">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="352" mass="36925" checksum="A9DD2B4419327BBA" modified="2016-01-20" version="1">MTKIRVLVVDDSALVRRLVTTALGSAPDIEVVGVAVDGLDAVRRVDELRPDVVTLDIEMPNLDGLGALTQIREKHARLPVIMFSTLTERGATATLDALSRGASDYVTKPSNTGKIADGIAAVRDQLVPRIRALAGLRKLTPGAGGPIVRRERTVQPTAAVSALLIGCSTGGPDALARLLPRLPGDLGVPVLVVQHMPPVFTAMLAQRLDKISQLEVREAADGDEVRPGRVLLAPGDFHLRVRRVGTSVRAVLDQEAQENFCRPAVDVLFRSALEVYGGSALATVLTGMGQDGLAGARQLAAAGARILVQDEDSSVVWGMPGAVAGAGLADDVLPLDALADRIVGAVRRSRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQD7</accession>
    <name>A0A0Q8VQD7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896681.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59660">
        <property type="protein sequence ID" value="KRC59660"/>
        <property type="gene ID" value="ASE19_01140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2153069at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="128" mass="13056" checksum="A8DD62E7B8B51A0C" modified="2016-01-20" version="1">MADTAPPGFVARNNQVIGSILSILALVVAVLLGAGLMFGTDTRGVRAILTVLTVAGGTFTLLLLAIGGAMRAVTSETQWELEEAEWRKEMGLTADDEADVASTGRLAVPLAVGAIVIGLGLSVVPAVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQR5</accession>
    <name>A0A0Q8VQR5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltransf_25 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55127">
        <property type="protein sequence ID" value="KRC55127"/>
        <property type="gene ID" value="ASE19_04835"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="47"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="217" mass="23516" checksum="58D3157550140E12" modified="2016-01-20" version="1">MSVETLREALTAGFWDERYGGSDRVWSGRPNQRLVEQVADLEPGTALDVACGEGGDAIWLAKQGWRVTAVDVSQVALAKVAAHAEQEGVDDRLRLGFYDALADPRPAGRHTFDLVTVSFLHVPVDDFGAIYRGIAAAVAPGGRLLVTAHHPEDVATGARHDHGPGLLFEPDRVLATLGADQPDSEWEVEVADTPDRVQETVDGPLAVRDTVVRLRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQW1</accession>
    <name>A0A0Q8VQW1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xanthine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06210</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895129.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55159">
        <property type="protein sequence ID" value="KRC55159"/>
        <property type="gene ID" value="ASE19_06210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="117507at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014309">
        <property type="entry name" value="Xanthine_DH_Mopterin-bd_su"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908">
        <property type="entry name" value="PTHR11908"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01315">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="SSF54665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02965">
        <property type="entry name" value="xanthine_xdhB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ald_Xan_dh_C" evidence="1">
        <location>
            <begin position="27"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="754" mass="80761" checksum="7D2ECA48E759EE92" modified="2016-01-20" version="1">MRAPVSPGTSGTVGQPRAHEAAALHVTGRALYTDDVALRTPGVLHAHPVGSPHAHARLRSLDPRPAYDVPGVVRVLTAADVPGVNDAGTKHDEPLFPAEAMFHGHAVAWVLGESLEAARLGAAAVVAEWDELPSVLTLTEAIEQEAFQGARPRLERGEVEEGFAASAHVFEGSFEMAGQEHFYLETHASLAHVDDDGQVNVSCSTQHPTETQEIVAHVLGLASHQVTVQCLRMGGGFGGKEMQPHGFAAIAALGATLTGRPVRLRLTRQQDMTMTGKRHGFHAAWEVGFDADGRLQALRATLTSDGGWSLDLSEPVLSRALCHVDNAYWIPHVLVDGRIAQTHKTSQTAFRGFGGPQGMLVVEDVLGRCAPLLGLAPEELRRRNFYVEGQATPYGQPVRHAERLDRAWQQVLTTSSYAERRAAIAAGNAQDPHRKRGLAITPVKFGISFNFTAFNQAGALVHVYKDGSVLINHGGTEMGQGLHTKMLQVAATALGLPIERVRLAPTRTDKVPNTSATAASSGADLNGAAVKDACGQILARLVPVRAELGRAASWEDVVRKAYFDRIQLWAAGYYRTEGLSWDAAAMRGNPFKYFAYGVAAAEVEVDGFTGGYEVTRVDIVHDVGDSLSPLIDLGQIEGGFVQGLGWLTLEDLRWDTSSGPTRGRLATQAASTYKLPSLSEMPADLRVALLDRATEDGAVYGSKAVGEPPLMLAFSVREALRDAVAAFGPAGRSVELASPATPEAVWWAIEEARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQW7</accession>
    <name>A0A0Q8VQW7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FAD_binding_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00405</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896805.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59535">
        <property type="protein sequence ID" value="KRC59535"/>
        <property type="gene ID" value="ASE19_00405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="504558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_3" evidence="1">
        <location>
            <begin position="2"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="403" mass="43540" checksum="6EEE0C1918862E3B" modified="2016-01-20" version="1">MRVAVVGLGTAGAATACLLFDRGHDVTVLEQADDPRPVGAGIWLQALGQQVLDRLDLLAPLRASSCDVSRVAMAGRDGRPLLDLRYDARRASTPALGVHRGDLFTLLFGAVRARGIPIELGARVTALEPRTGGVALTVDDPGGPDARELGRFDLVVGADGSRSQVRAALGLTSRDRTYRYGALWAIVPDRAGLAGDTLHQRMDGTRRYLGVLPTGTDRASLFWSERTDRFEAVLAAGLPRWREDARALAGEFAPLLDEVTELLPAAYRSVAVRSSYRMVGGGRSAGVLLGDAAHAMSPQLGAGTSLALADAWTLAVALERKEPLPDALAWYDDQRRAHVRWYRWWTRALTPAFQSDLTALALPRDLLTPVLARTPGVPRLLVGTLSGDRTSLRRTWRLPRDAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQY8</accession>
    <name>A0A0Q8VQY8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ANTAR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01260</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59818">
        <property type="protein sequence ID" value="KRC59818"/>
        <property type="gene ID" value="ASE19_01260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005561">
        <property type="entry name" value="ANTAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013655">
        <property type="entry name" value="PAS_fold_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03861">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08447">
        <property type="entry name" value="PAS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01012">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50921">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ANTAR" evidence="1">
        <location>
            <begin position="105"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="196" mass="21977" checksum="F5335C4BCF2285FA" modified="2016-01-20" version="1">MAASKWEWDDDVYAIHGYRPGEVEPTTELIMRHKHEHDRERVEETLAQARADGAPFNIYYRILVGDSVRRVVLVGEGEYDDEARIGGPVDRLVGYYLDLTPEMEAESSAAANAAVAASAKARDTIEQAKGILMLGYGLDPDAAFAMLKWWSRNRNVKVREVADRLIQVARDGHVSHPGLRRLLDSLLDDLTAHRVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRC5</accession>
    <name>A0A0Q8VRC5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_02205</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893056.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57021">
        <property type="protein sequence ID" value="KRC57021"/>
        <property type="gene ID" value="ASE19_02205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1817663at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007351">
        <property type="entry name" value="YjbR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038056">
        <property type="entry name" value="YjbR-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04237">
        <property type="entry name" value="YjbR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142906">
        <property type="entry name" value="SSF142906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="119" mass="12935" checksum="B81C749CE2DF4285" modified="2016-01-20" version="1">MLAHCLAKPGAWPDNPWDHEYPVVKVGDGERGKIFAFLGADHVGIKAGPTREVADEWLHRHPDDATVMPYIGRSGWNNLALGGGIPDDELIEAVDASYLAVVSKLPKSQRPAGWDQPVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWB4</accession>
    <name>A0A0Q8VWB4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Trk system potassium uptake protein TrkA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_22805</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892587.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58897">
        <property type="protein sequence ID" value="KRC58897"/>
        <property type="gene ID" value="ASE19_22805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1768241at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015079">
        <property type="term" value="F:potassium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006036">
        <property type="entry name" value="K_uptake_TrkA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003148">
        <property type="entry name" value="RCK_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02080">
        <property type="entry name" value="TrkA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02254">
        <property type="entry name" value="TrkA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00335">
        <property type="entry name" value="KUPTAKETRKA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51201">
        <property type="entry name" value="RCK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0630">Potassium</keyword>
    <keyword evidence="2" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="RCK N-terminal" evidence="5">
        <location>
            <begin position="2"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="6">
        <location>
            <begin position="137"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00017378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC58897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="224" mass="24226" checksum="C1E6DCC7F75F32A9" modified="2016-01-20" version="1">MRVAIAGAGAVGRSIARELIENGHEVLLIDKSPSSIHPERVPDAEWLLADSCELSSLEEARLDKCDVVIAATGDDKANLVTSLLAKTEFGVPRTVGRVNHPNNEWLFTEAWGVDVNVSTPRIMSALVEEAVTVGDLVRLFTFRQGNANLVEMTLPADSPYVGKASGLIPLPENCALVSILRDQQVYVPTPEQPVESGDELLFVVPSEAEDELERLLAPGSHPQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXQ6</accession>
    <name>A0A0Q8VXQ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00395</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896807.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59533">
        <property type="protein sequence ID" value="KRC59533"/>
        <property type="gene ID" value="ASE19_00395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360471" evidence="2">
        <location>
            <begin position="29"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="333" mass="33950" checksum="7F88B46D766E7448" modified="2016-01-20" version="1">MLPLRLLVATAAVSGLAIAGLSPAPAHAAVPITDGTLALDADLNFNSSSCTGASAPAGVSAPFTAGTTVKRTLTFDQTATASDPTDSVRMRGSQTTAVSSTAAGGQVTSLTVTSTITGSVTPTKATSACDQGSDFPTGESSQSQVQAVLHRSTAGWLHVQATSTGVGGHIVAVGVGDDRFLQSEIGGFAIRDISHDSWVYVPAGDSEVQVQLGGASVDNFGLAKISLKQSVKLTFLPAGVARTATTGTARSKVVFPNVLTCSTGKAVARLTSKVRGASRVTFYVNGVKKQSYVRPGARTVVLTGVPKNRAVALKAIVKDGRRTLTAARAYRSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM86</accession>
    <name>A0A0Q8UM86_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribosomal silencing factor RsfS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rsfS</name>
        <name evidence="3" type="ORF">ASE19_19740</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Interacts with ribosomal protein L14 (rplN).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the Iojap/RsfS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895883.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46107">
        <property type="protein sequence ID" value="KRC46107"/>
        <property type="gene ID" value="ASE19_19740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1990650at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042256">
        <property type="term" value="P:mature ribosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090071">
        <property type="term" value="P:negative regulation of ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017148">
        <property type="term" value="P:negative regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01477">
        <property type="entry name" value="Iojap_RsfS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004394">
        <property type="entry name" value="Iojap/RsfS/C7orf30"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21043">
        <property type="entry name" value="PTHR21043"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00090">
        <property type="entry name" value="rsfS_iojap_ybeB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0678">Repressor</keyword>
    <keyword evidence="2" id="KW-0810">Translation regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="129" mass="14327" checksum="80D236C59C9B5B02" modified="2016-01-20" version="1">MTATEHAVELIRAAAVAASDKLATDQLAFDVSEQLAITDAFLLASGGNDRQVRAIVEEVEDKLRELGAKPIRREGHRDGRWILLDYGDVVIHVQHAEEREFYALERLWRDCPLIELPAEVNGPVAPSAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMB8</accession>
    <name>A0A0Q8UMB8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="4">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_19890</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895909.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46133">
        <property type="protein sequence ID" value="KRC46133"/>
        <property type="gene ID" value="ASE19_19890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1457558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000687">
        <property type="entry name" value="RIO_kinase"/>
    </dbReference>
    <dbReference type="SMART" id="SM00090">
        <property type="entry name" value="RIO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 12" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RIO" evidence="11">
        <location>
            <begin position="25"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC46133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="281" mass="31695" checksum="AFCE7A9A4891FB52" modified="2016-01-20" version="1">MFQENLSPDIDPRFVFDYQSYDELEPGQRWSTWLSVEPLSRGPEPRPDWVVTSQGAIDTDLGILKTGKEADVFLLDRTDPHDPAQSVVMAAKRYRAPDHRTFHRSASYTEGRSMKRSRDERAIKRKSTFGREVAAGEWAISEWSALNRCWELGLPVPYPVQVDGTEILMEWISVDGETAPRLAQTRPDPALLASYFDQLRDAMAVLVQAGLVHGDLSPYNILAAGDRLVVIDLPQLVDLVGNAQGFDFLLRDCTNVCSWFVRRGLEVDPQELFGDLMAHAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN55</accession>
    <name>A0A0Q8UN55_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896197.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46427">
        <property type="protein sequence ID" value="KRC46427"/>
        <property type="gene ID" value="ASE19_21610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1471910at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="716" mass="80236" checksum="8ADB674F648FCD81" modified="2016-01-20" version="1">MSPPRRARPGQRRLRPDNPPSYLDNRWQYELERYVAGEFSPRSWFEWLTSFRRAAEEAAADLPHACAELRSLLDSVDPIAMYGAMDVYDAMRRSHMPGPANFGSDAMVELMAGFVVSSDEISMLPRIDERFDPWLVQECDALLQRIANLRYLASTAKYVESDPKGGAGLRRMIELEHNFDRMAGFDPHVRRVAVEVLGRVDDRAKVELGFKLTESLRFAHLYNQVRIRHARRTDAYLAEAYPSPAADEPPAVQESWMVGHFVLWALNANAPLEGGVVDEALAENLGLDPDAFQSVIASLSTRVGTVEPDQIHTDNPVRVRPIVKLSSGEWMWPRPVDFVHVALEWAHGAVTPHPRLVSALDKARQRTAEDLTEELLREVFGERVYRSVTYPVEQSDAEVDVLVRLPGALLVVECKGGRISREGRRGAPHRVDRHIKDIVERANDQNGRTIRAIRDGAPFVDARGRSLDLDANSVILPITVTLDRVDPFGAYLGFADAESGVERSWIISLADLIMLAELLPSPSDFVAYVAKRRQMLRDEVLVYVEADALGAWFEDRLSSIAAVSDPHNDRVTRLLRETSEWMNDYYAIEALRRSDAPQDEVDDYLRDHPMGGQKPATRLPSAVIRSLDGLLQQEDPTWLAATCAALEVRPSAWKPVRRLLDAVDGGPPTGRRKSRQMRRAASGYEVDGRVTLTIDVASTGELSLQVAPTRQGLNVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNB9</accession>
    <name>A0A0Q8UNB9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Latex clearing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21990</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896261.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46491">
        <property type="protein sequence ID" value="KRC46491"/>
        <property type="gene ID" value="ASE19_21990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="624204at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037473">
        <property type="entry name" value="Lcp-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018713">
        <property type="entry name" value="MPAB/Lcp_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37539">
        <property type="entry name" value="PTHR37539"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09995">
        <property type="entry name" value="MPAB_Lcp_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359232" evidence="1">
        <location>
            <begin position="31"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="domain" description="MPAB_Lcp_cat" evidence="2">
        <location>
            <begin position="129"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="405" mass="44189" checksum="25E170B450C8C3CF" modified="2016-01-20" version="1">MQGLSRRGILLGGSALGAVGAFGVITPAEAWTWSPSASVVGTGTGVDPRTVHDPVADDLVAALFERGEVDLVNDLLKGWTRNGQALPAGLPADLRAFLEEARQLPSWTDQAKLDQAFSFYQRRGLYLGVLYGLGSGMMSCVIPREAKAVYYSAGGADMKDRIDKTAKLGYDIGVNGAFGPNGQMVVTCLKTRLTHAAVRHLLPQSGHWHAAAEETKPISQADIMVTWHSLATFSFNKLTAWGVPMPSADSAAFLHLWQITAHMLGVADEYIPATWSESNAQSRQVLDPILAPTTEGVKLAKILLNLAAEYDGGLTKPMLHSFTRFCLGDQIADWLEVPREPATDLFVRTGWPPFIAFREATMWFPFAPQGYWLFDEFIRLGVRFFLGEGKVTNITMPTGNNPNYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNG4</accession>
    <name>A0A0Q8UNG4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">DNA ligase</fullName>
            <ecNumber evidence="9">6.5.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Polydeoxyribonucleotide synthase [NAD(+)]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">ligA</name>
        <name evidence="11" type="ORF">ASE19_21100</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="9">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the NAD-dependent DNA ligase family. LigA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.5.1.2" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896106.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46335">
        <property type="protein sequence ID" value="KRC46335"/>
        <property type="gene ID" value="ASE19_21100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="241401at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003911">
        <property type="term" value="F:DNA ligase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00114">
        <property type="entry name" value="LIGANc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01588">
        <property type="entry name" value="DNA_ligase_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001357">
        <property type="entry name" value="BRCT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036420">
        <property type="entry name" value="BRCT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041663">
        <property type="entry name" value="DisA/LigA_HHH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018239">
        <property type="entry name" value="DNA_ligase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001679">
        <property type="entry name" value="DNAligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013839">
        <property type="entry name" value="DNAligase_adenylation"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013840">
        <property type="entry name" value="DNAligase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004150">
        <property type="entry name" value="NAD_DNA_ligase_OB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004149">
        <property type="entry name" value="Znf_DNAligase_C4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00533">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01653">
        <property type="entry name" value="DNA_ligase_aden"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03120">
        <property type="entry name" value="DNA_ligase_OB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03119">
        <property type="entry name" value="DNA_ligase_ZBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12826">
        <property type="entry name" value="HHH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001604">
        <property type="entry name" value="LigA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00292">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00532">
        <property type="entry name" value="LIGANc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52113">
        <property type="entry name" value="SSF52113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00575">
        <property type="entry name" value="dnlj"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50172">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01055">
        <property type="entry name" value="DNA_LIGASE_N1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="4 9" id="KW-0227">DNA damage</keyword>
    <keyword evidence="8 9" id="KW-0234">DNA repair</keyword>
    <keyword evidence="2 9" id="KW-0235">DNA replication</keyword>
    <keyword evidence="1 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0464">Manganese</keyword>
    <keyword evidence="3 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 9" id="KW-0520">NAD</keyword>
    <keyword evidence="11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="BRCT" evidence="10">
        <location>
            <begin position="613"/>
            <end position="690"/>
        </location>
    </feature>
    <feature type="active site" description="N6-AMP-lysine intermediate" evidence="9">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="41"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="90"/>
            <end position="91"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="300"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="324"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="418"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="421"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="437"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="443"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC46335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="697" mass="75216" checksum="E73306588428C44A" modified="2016-01-20" version="1">MSDAALPVVPPEARDEHATISEEVEDARYRYYVLDEPTLSDADFDQRLRRLEALEDEFPELRTPDSPTQKVGGAVSTDFTAVDHLQRMESLDNAFSFDELGAWYARLAREDVGEPALLCELKVDGLAINLLYENGRLVRALTRGDGRTGEDVTPNVKTIAAVPHRLSGTDEFPVPALVEVRGEVFLPVAAFEALNVAMTEAGRPAFANPRNAAAGSLRQKDPRVTASRALGMVCHGVGAREGFDPQAQSQAYEALAAWGLPISEQVRVLPSLADVQGYIENAGEHRHTIVPYEIDGVVVKVDDVTLQRRLGSTSRAPRWAIAYKYPPEEVNTVLLDIAVNVGRTGRVTPYGVMEPTKVAGSTVENATLHNFHEVERKDVRPGDTVVLRKAGDVIPEIVGPVLPLRPEGLAPWVPPTTCPACSTELVEQKEGDKDRRCPNHEKCPGQVRERVFFVAGRSAFDIEGLGYEAAVALLESGAITNEGDVFDLDTDKLRATELFTRAPRKDEDGPQLTANGAKLLANLDARKDVPLWRVIVALSIRHTGPSASRALAQEFGSMAAIRAATEEQLAAAEGVGPTIARAVIEWFEVPWHVAIVDKWAAAGVSMEDARDESVARTLEGLTVVVTGSLVDFSRDSAKEAILSRGGKAAGSVSKKTDYVVVGDNAGSKAEKAEQLGVPVLDEDGFKRLLEGGPAGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNN1</accession>
    <name>A0A0Q8UNN1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21535</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896185.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46415">
        <property type="protein sequence ID" value="KRC46415"/>
        <property type="gene ID" value="ASE19_21535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1663413at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="173" mass="19185" checksum="2306BA5D8899220D" modified="2016-01-20" version="1">MSTEPDPWLPAGWVHPTRVALTDGHHLRPMGPADVELDLPAVRSSRERLWTIYGQAWGWPPAHLSRDADIDDLAHHAAETEAHESFLYGLFDTGETALLGCVYVDPPSKVGADAEISWWVVDALLGSDLEASLDAFVPQWIAAAWPLTRPRYVGRDLTWADWLALPDLVEETA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNN8</accession>
    <name>A0A0Q8UNN8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HxlR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19715</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896367.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46598">
        <property type="protein sequence ID" value="KRC46598"/>
        <property type="gene ID" value="ASE19_19715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1919329at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="19"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="17962" checksum="E99A83F1A87616A9" modified="2016-01-20" version="1">MRLHAPLDDRTAWSPVGHCPIEKAIAVVGSRPAMLIMREAHYGTRRFDDFVTRVGVAPATASTHLRALTDAGLLERQPYQDEGARTRDEYALSPAGADLMPVVIGLFSWGMKHTDGVDDLEFAHVGCAEPVDLRVACAAGHEVGEQDVEVRLRRGRPRRRVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNP6</accession>
    <name>A0A0Q8UNP6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21630</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896201.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46431">
        <property type="protein sequence ID" value="KRC46431"/>
        <property type="gene ID" value="ASE19_21630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="251" mass="27176" checksum="CA7BF7B039B1AFA7" modified="2016-01-20" version="1">MTSPLQIEEYGDRVVLRLNRPEVRNAIDLATVDALHEACSGLESKPRIAMIVGSGGIFAAGADIAQLRERRRADALAGINSGIFDRIHKLPMPVIALIDGFALGGGAELAYACDFRIGTPSTRIGNPEPGLGILAAAGGSWRLRELVGEPLAKEVLLAGKVLSADEAHHVRLLNDVVEPDELEAAGHRLADKIAAQAPLAVRLTKSVFHSPREAHPLIDDIAQAVLFETQDKYDRMTNFLDRRSDKSKEKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNQ3</accession>
    <name>A0A0Q8UNQ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Thioesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20695</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896389.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46620">
        <property type="protein sequence ID" value="KRC46620"/>
        <property type="gene ID" value="ASE19_20695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1096413at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042171">
        <property type="entry name" value="Acyl-CoA_hotdog"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="255" mass="27423" checksum="C7EDCF3D51448601" modified="2016-01-20" version="1">MAYWHRTAAHTFAPTEHVGGAWDRATQHIAPALGVLAHEVERDRDARRSDGLVVSRLSYDILGTVPIEPIDVGVEVLRPGRTIELVQATASYRGRAVALLRAWLAEPYDTTPLAGTDLPSIPGPDEMQPWDMAGLWRGGFIASIEVRRKELGPGRSMAWVRTPHALVADEPVSRLAAVAGLIDVTNGIAVRTDPEQVAFPNLDLTAHFLHAPADGWLGLDTTQSYGPGGIGVTSSKMHDESGPLGTIAQTLTVRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8URX7</accession>
    <name>A0A0Q8URX7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21600</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896195.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46425">
        <property type="protein sequence ID" value="KRC46425"/>
        <property type="gene ID" value="ASE19_21600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1541733at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="20748" checksum="7CC262301B62974A" modified="2016-01-20" version="1">MAYSFEKVQADPVLTTVRRLEQRIAARFPDRGLRQVAAELARLVERVQTRTDSVRGRRAGLRTLSRGAMIAVVLATIVLVVLAVRAAATDAPDDLEWVPLVESAVNDLVFAALALWFLWSVPERLQRDALLKLLHRLRSMAHIVDMHQLTKDPERLRASFDPTEASVDMDLTPNELEHYLDKCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUB2</accession>
    <name>A0A0Q8UUB2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">3-methyl-2-oxobutanoate hydroxymethyltransferase</fullName>
            <ecNumber evidence="5">2.1.2.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Ketopantoate hydroxymethyltransferase</fullName>
            <shortName evidence="5">KPHMT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">panB</name>
        <name evidence="10" type="ORF">ASE19_17720</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + 3-methyl-2-oxobutanoate + H2O = (6S)-5,6,7,8-tetrahydrofolate + 2-dehydropantoate</text>
            <dbReference type="Rhea" id="RHEA:11824"/>
            <dbReference type="ChEBI" id="CHEBI:11561"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="EC" id="2.1.2.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="5 8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; (R)-pantothenate biosynthesis; (R)-pantoate from 3-methyl-2-oxobutanoate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 5">Homodecamer; pentamer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the PanB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.11" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893168.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48766">
        <property type="protein sequence ID" value="KRC48766"/>
        <property type="gene ID" value="ASE19_17720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="916845at2"/>
    <dbReference type="UniPathway" id="UPA00028">
        <property type="reaction ID" value="UER00003"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003864">
        <property type="term" value="F:3-methyl-2-oxobutanoate hydroxymethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06557">
        <property type="entry name" value="KPHMT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00156">
        <property type="entry name" value="PanB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003700">
        <property type="entry name" value="Pantoate_hydroxy_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20881">
        <property type="entry name" value="PTHR20881"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02548">
        <property type="entry name" value="Pantoate_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000388">
        <property type="entry name" value="Pantoate_hydroxy_MeTrfase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00222">
        <property type="entry name" value="panB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3 5" id="KW-0566">Pantothenate biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 10" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Alpha-ketoisovalerate binding" evidence="5 7">
        <location>
            <begin position="69"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="5 6">
        <location>
            <position position="206"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7 8">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>3-methyl-2-oxobutanoate</name>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="140"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011424"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000388-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000388-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000388-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC48766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="288" mass="30666" checksum="C5FB3974F00D4421" modified="2016-01-20" version="1">MSSSTPEETAPYGGAPAAPATPAPVRRIRTHHLREMKERGERFSMLTSYDQLTAGIFDEAGIEVLLVGDSASNNVLGNSTSIPVTVDELLPLTRAVSRSVSRALVVGDLPFGSYQASPEQGYLTAVRFMKEGGAHCVKLEGGVEMAPQIELMTRGGIPVMAHIGFTPQSEHALGGYRVQGRGAAADRVLRDALAVQEAGAFAVVMEMVPGDVAAEVTAKLDIPTIGIGAGNQCDGQVLVWQDAFGLRTGKLPRFVKQYADLRSVLLDAARAYDSEVKDQSFPAPEHTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUI8</accession>
    <name>A0A0Q8UUI8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidase_M43 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18215</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893254.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48853">
        <property type="protein sequence ID" value="KRC48853"/>
        <property type="gene ID" value="ASE19_18215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1063831at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04275">
        <property type="entry name" value="ZnMc_pappalysin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008754">
        <property type="entry name" value="Peptidase_M43"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05572">
        <property type="entry name" value="Peptidase_M43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359454" description="Peptidase_M43 domain-containing protein" evidence="1">
        <location>
            <begin position="35"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M43" evidence="2">
        <location>
            <begin position="226"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="318" mass="32892" checksum="EAC9E1E5C0E0DCF8" modified="2016-01-20" version="1">MVRRRRLAAIAGSVALLSAVLTGAATPGSTSAHAADDVPCFDPAGARTTSGAHGRGHEANVDDAYAREAALLAKGNAQAKAALGKPPGGGGGTPAVTGGVIDVHWHVINNGSGIANGDIPDSQINSQISVLNNAYAPWGWSFRLVSTDRTTNASWYVAEPGTAAETAMKTALRLGSADDLNVYSANPGSDLLGWATFPASYASNPKDDGVVLLFSSVPGGSAAPYNLGDTATHEIGHWMGLFHTFQGGCSKTGDYVADTAPERSAAFGCPVGRDTCRSGGVDPINNFMDYSDDACMFEFTVGQDARMDAQFSTYRANR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUT6</accession>
    <name>A0A0Q8UUT6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DM13 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18815</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893357.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48955">
        <property type="protein sequence ID" value="KRC48955"/>
        <property type="gene ID" value="ASE19_18815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1551664at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019545">
        <property type="entry name" value="DM13_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10517">
        <property type="entry name" value="DM13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51549">
        <property type="entry name" value="DM13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DM13" evidence="1">
        <location>
            <begin position="64"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="180" mass="19229" checksum="2EFEFFA7E9EA60B8" modified="2016-01-20" version="1">MSRKRTIGLSLGGLLVVLLVAALPVFQPWLLLVDDEVHESDDPSRVVGTASAGLSDTAVPSASGTARTRVALASAAFVDAEHGTTGRATVYRRSDGSRFLRLDDLDTSNGPDLHVWLTDQPSGGSWGSYDDGRYVRLGPLKGNRGSQSYEIPGRADLRPMRSVVIWCDRFNVAFGTAAIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUT8</accession>
    <name>A0A0Q8UUT8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 10">Phosphatidylinositol phosphate synthase</fullName>
            <shortName evidence="10">PIP synthase</shortName>
            <ecNumber evidence="10">2.7.8.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9 10">CDP-diacylglycerol--D-myo-inositol-3-phosphate 3-phosphatidyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_19020</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the conjugation of the 1'-hydroxyl group of D-myo-inositol-3-phosphate (also named L-myo-inositol-1-phosphate) with a lipid tail of cytidine diphosphate diacylglycerol (CDP-DAG), forming phosphatidylinositol phosphate (PIP) and CMP. PIP is a precursor of phosphatidylinositol (PI) which is an essential lipid required for cell wall formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 10">
            <text>1,2-di-(9Z-octadecenoyl)-sn-glycero-3-cytidine-5'-diphosphate + 1D-myo-inositol 3-phosphate = 1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phospho-(1D-myo-inositol-3-phosphate) + CMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:61216"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58401"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="ChEBI" id="CHEBI:85356"/>
            <dbReference type="ChEBI" id="CHEBI:144472"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 10">
            <text>1D-myo-inositol 3-phosphate + a CDP-1,2-diacyl-sn-glycerol = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3-phosphate) + CMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:60504"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58088"/>
            <dbReference type="ChEBI" id="CHEBI:58332"/>
            <dbReference type="ChEBI" id="CHEBI:58401"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="10">Contains a di-nuclear catalytic Mg(2+) center.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Phospholipid metabolism; phosphatidylinositol phosphate biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 10">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 10 11">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.-" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893390.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48988">
        <property type="protein sequence ID" value="KRC48988"/>
        <property type="gene ID" value="ASE19_19020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1232102at2"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00128"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00220"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016780">
        <property type="term" value="F:phosphotransferase activity, for other substituted phosphate groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02241">
        <property type="entry name" value="PIP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044268">
        <property type="entry name" value="PIP_synthase_PgsA1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00379">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="10" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="10" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 11 12" id="KW-0808">Transferase</keyword>
    <keyword evidence="10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="20"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="52"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="117"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="181"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="region of interest" description="CDP-DAG binding" evidence="10">
        <location>
            <begin position="29"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>a CDP-1,2-diacyl-sn-glycerol</name>
            <dbReference type="ChEBI" id="CHEBI:58332"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>a CDP-1,2-diacyl-sn-glycerol</name>
            <dbReference type="ChEBI" id="CHEBI:58332"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>a CDP-1,2-diacyl-sn-glycerol</name>
            <dbReference type="ChEBI" id="CHEBI:58332"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00033137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC48988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="219" mass="23580" checksum="092324BE25818FDD" modified="2016-01-20" version="1">MLERFKEFWAGTVLHPFVRLFIRMGISPDAVTLVGTLGVSAGALIFFPQGELLIGVLFITAFVFSDLIDGRMAREMGRVSKFGAFWDSTLDRIGDGAIFGGLALYYAGTGADQGDSYLYLCVTLWCLVMGSVTSYARARAESLGMDARGGIAERADRLVSILVMTGLSAIFDLPILMEVTLWALAVASTYTVIFRVLKVRRQALAAEAEAAASAGEPEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV29</accession>
    <name>A0A0Q8UV29_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19440</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893464.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49062">
        <property type="protein sequence ID" value="KRC49062"/>
        <property type="gene ID" value="ASE19_19440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1455736at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359455" evidence="1">
        <location>
            <begin position="28"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="357" mass="35733" checksum="1D0C01A6434F275B" modified="2016-01-20" version="1">MTRYSGRIRLLVLLVAALLATSLGSSAVQPTATTLGAGLGISVDRTSVGVTIGSQAVVAVTVSQPGSLLGPVHLSVTGAPVGATVAILPNPAINGIPAVVAVQTSATTPVGSYLLKITATSNGQSVSVNVQLNVTLATGFTMVLSPPAATVVDGQSTTYTLTVNRGLLAGPISLSLSGVPQNATATVSPSLSLLGNTATVKVSTATNVVPGTYLITVKGQSLLASETASAYLIVLPQTYDDFPIAGTPDRTLAPGSERAAIDLALTNPFGAPMTVTALGVDVTSTDKPGCATSNYAVTGYSGPFPLTIPAHSTRTLSSLGVPRAQWPAVRMLNLPTNQDACKTAVVQLAYSGAGNGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVK4</accession>
    <name>A0A0Q8UVK4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Peptidase_M48 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_19320</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the peptidase M48 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893441.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49039">
        <property type="protein sequence ID" value="KRC49039"/>
        <property type="gene ID" value="ASE19_19320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001915">
        <property type="entry name" value="Peptidase_M48"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01435">
        <property type="entry name" value="Peptidase_M48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1 6" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="35"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="68"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M48" evidence="9">
        <location>
            <begin position="104"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="297"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="300"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC49039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="368" mass="39791" checksum="CA5CCA8CCB8D7465" modified="2016-01-20" version="1">MPTSPTFAQRIDARVAEAFDRRLVDRMAAGGNRGLARLAAVALATPVHLVSIAVLAAAVYVVVRGDNLWAWAVGAFLAAVAWVTRPRLLWAPDPDSIRVDGSAPELVALVREVCELAGTRPPAQVRVDDAFNAYVSPIGIGQRQLVLGATLWAALGPQERVALLGHEIGHLAHGDLLSGQFVGGAYDTLRGWISLLRPDTWETVLIHAAMAPPRWLLRGYLHLLVRVNATSSRSQELYADLFGAVAAGTDAAASLHEVTLLAEGLDVVANRAAMDRDRPHIGVSIADRVASYDAAQRAGNRRAAAEDERRTDASHPPTVDRLRLVESVERSIPAIVVDAARSRRIDQQLQPALDQAFKRLGDAYRYVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXT5</accession>
    <name>A0A0Q8UXT5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glyceraldehyde-3-phosphate dehydrogenase</fullName>
            <ecNumber evidence="8">1.2.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_15855</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.-" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893559.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50092">
        <property type="protein sequence ID" value="KRC50092"/>
        <property type="gene ID" value="ASE19_15855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="944149at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004365">
        <property type="term" value="F:glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020831">
        <property type="entry name" value="GlycerAld/Erythrose_P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020830">
        <property type="entry name" value="GlycerAld_3-P_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020829">
        <property type="entry name" value="GlycerAld_3-P_DH_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020828">
        <property type="entry name" value="GlycerAld_3-P_DH_NAD(P)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006424">
        <property type="entry name" value="Glyceraldehyde-3-P_DH_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43148">
        <property type="entry name" value="PTHR43148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02800">
        <property type="entry name" value="Gp_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00044">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000149">
        <property type="entry name" value="GAP_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00078">
        <property type="entry name" value="G3PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00846">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01534">
        <property type="entry name" value="GAPDH-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00071">
        <property type="entry name" value="GAPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gp_dh_N" evidence="9">
        <location>
            <begin position="3"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="region of interest" description="Glyceraldehyde 3-phosphate binding" evidence="4">
        <location>
            <begin position="153"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="region of interest" description="Glyceraldehyde 3-phosphate binding" evidence="4">
        <location>
            <begin position="212"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="3">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="12"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="235"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="313"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="site" description="Activates thiol group during catalysis" evidence="6">
        <location>
            <position position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU361160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC50092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="332" mass="34966" checksum="F5426427EEE3C0B3" modified="2016-01-20" version="1">MTVRVGINGFGRIGRNFFRAVQASGADIEIVGVNDLTDNATLAHLLKYDSILGPLGTEVTSTDDSIIVGGTEIKAFAERDPAALGWGDLGVDVVVESTGFFTDATKARAHVDGGGAKKVIISAPASNEDITIVMGVNHELYSPDTHTVISNASCTTNCLAPMAKALNDGLGIVKGLMTTVHAYTADQNLQDNIHKDLRRARAAAINIVPTSTGAAKAIGLVLPELKGKLDGYALRVPTPTGSLTDLSFEAGRETSVEEVNEIVRAAADGRYLVYSTDPIVSSDIVTNPASCIFDAPLTKVIGNQVKVAGWYDNEWGYSNRLADLITHVGATL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYB5</accession>
    <name>A0A0Q8UYB5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_16775</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GHMP kinase family. GalK subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893720.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50251">
        <property type="protein sequence ID" value="KRC50251"/>
        <property type="gene ID" value="ASE19_16775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1388391at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004335">
        <property type="term" value="F:galactokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006012">
        <property type="term" value="P:galactose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000705">
        <property type="entry name" value="Galactokinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019741">
        <property type="entry name" value="Galactokinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019539">
        <property type="entry name" value="GalKase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013750">
        <property type="entry name" value="GHMP_kinase_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036554">
        <property type="entry name" value="GHMP_kinase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006204">
        <property type="entry name" value="GHMP_kinase_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006203">
        <property type="entry name" value="GHMP_knse_ATP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006206">
        <property type="entry name" value="Mevalonate/galactokinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10457:SF6">
        <property type="entry name" value="PTHR10457:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10509">
        <property type="entry name" value="GalKase_gal_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08544">
        <property type="entry name" value="GHMP_kinases_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00288">
        <property type="entry name" value="GHMP_kinases_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000530">
        <property type="entry name" value="Galactokinase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00473">
        <property type="entry name" value="GALCTOKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55060">
        <property type="entry name" value="SSF55060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00106">
        <property type="entry name" value="GALACTOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00627">
        <property type="entry name" value="GHMP_KINASES_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="6" id="KW-0299">Galactose metabolism</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GalKase_gal_bdg" evidence="9">
        <location>
            <begin position="6"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="domain" description="GHMP_kinases_N" evidence="7">
        <location>
            <begin position="90"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="GHMP_kinases_C" evidence="8">
        <location>
            <begin position="242"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF10509"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC50251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="348" mass="36052" checksum="1D908D061B348066" modified="2016-01-20" version="1">MSTARAVAPGRVNLIGEHTDYNRGLCLPFAIPLATTATVTARDDDRLTVTSDHGEPWSGRLDERTSGWSAYVAGVVWSLREQGWSLPGLDISLSSTIPLGGGLSSSAALECAVAVALAGLLGEPLDRAGRLALAEACRRAETEYVGAPTGGVDQLASLLATEGHGVLIDFADPGAPRAENVPLDLARAGLTILVTDTGVRHSLADGDGGYAQRRAEAEAGDPHRWRHIDSENERVRATVAAVGADDWPEVGRLLTASHVSLRDDYEVSCAELDVTVDAALGAGALGARLTGGGFGGCAISLVRVDATATARAAIDAAYAGRGWPAPRHHEVRPVAGAQLLSPAEQPRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYH6</accession>
    <name>A0A0Q8UYH6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17145</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893787.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50318">
        <property type="protein sequence ID" value="KRC50318"/>
        <property type="gene ID" value="ASE19_17145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1996210at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="102"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="199" mass="20892" checksum="EAFD5FAF840B73A8" modified="2016-01-20" version="1">MARSGGPADLISRNLRALHGALEHSVTVQTTKLQELMDDMVTRGALTRTEADQLLGQLLSSSKAYSQALLQVLDTITETATAPVRATAGRIAQAVTQAPKLMPGRRRTPAPPRAAEAARVPVAATEAPAASKRPRLTVVDPSAKAAGADGLPDLSTLTVAQVKARIAGLDASALRRLRDQEVAGKNRKGVLAEIARQLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZA1</accession>
    <name>A0A0Q8UZA1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">16S rRNA (Guanine(966)-N(2))-methyltransferase RsmD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_20180</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895958.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46183">
        <property type="protein sequence ID" value="KRC46183"/>
        <property type="gene ID" value="ASE19_20180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1827334at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031167">
        <property type="term" value="P:rRNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004398">
        <property type="entry name" value="RNA_MeTrfase_RsmD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004553">
        <property type="entry name" value="CHP00095"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00095">
        <property type="entry name" value="TIGR00095"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="197" mass="21055" checksum="AC99DC4BEE06BC3B" modified="2016-01-20" version="1">MTRIIAGSAGGRRLQTPPGDRTRPTSDRVREALFSAIESWAGSLHDLRFLDLYAGSGAIGLEAWSRGAGAATFVEADRRTADLVRANARSIGCDVADVVARSVASVLAEPARAAYDVVFSDPPYPLEEEALATDLALLVEHGWLAEGALVIVERSRRSPEPTWPAGLEPLAGKRRLKKYGETHLWLAEAGPTASLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0G7</accession>
    <name>A0A0Q8V0G7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Methylmalonyl-CoA mutase</fullName>
            <ecNumber evidence="10">5.4.99.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_22150</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(R)-methylmalonyl-CoA = succinyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:22888"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:57326"/>
            <dbReference type="EC" id="5.4.99.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>adenosylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Metabolic intermediate metabolism; propanoyl-CoA degradation; succinyl-CoA from propanoyl-CoA: step 3/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Heterodimer of an alpha and a beta chain.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.2" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896287.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46519">
        <property type="protein sequence ID" value="KRC46519"/>
        <property type="gene ID" value="ASE19_22150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="154460at2"/>
    <dbReference type="UniPathway" id="UPA00945">
        <property type="reaction ID" value="UER00910"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004494">
        <property type="term" value="F:methylmalonyl-CoA mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006159">
        <property type="entry name" value="Acid_CoA_mut_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016176">
        <property type="entry name" value="Cbl-dep_enz_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006099">
        <property type="entry name" value="MeMalonylCoA_mutase_a/b_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006098">
        <property type="entry name" value="MMCoA_mutase_a_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01642">
        <property type="entry name" value="MM_CoA_mutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51703">
        <property type="entry name" value="SSF51703"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00640">
        <property type="entry name" value="acid_CoA_mut_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00641">
        <property type="entry name" value="acid_CoA_mut_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0846">Cobalamin</keyword>
    <keyword evidence="8" id="KW-0170">Cobalt</keyword>
    <keyword evidence="7 10" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="9">
        <location>
            <begin position="584"/>
            <end position="715"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="715" mass="77478" checksum="48FB97649EBE8BC5" modified="2016-01-20" version="1">MTIPDSFAGLPLAGVGTTPDAPVTGEPWKSPEGIEIKGWYGPDDLAGLDALDTFPGLSPFLRGPYPTMYTTQPWTIRQYAGFSTAEESNAFYRRNLAAGQKGLSVAFDLATHRGYDSDHPRVRGDVGMAGVAIDSIYDTRTLFDGIPLDQMSVSMTMNGAVLPVLALYIAAAEEQGVKPEQLSGTIQNDILKEFMVRNTYIYPPAPSMRIISDIFAFTSQKMPRFNSISISGYHMQEAGATADLELAYTLADGVEYIRAGLESGLTIDQFAPRLSFFWAIGMNFYMEVAKMRAARALWSRLVRQFDPQNPKSLSLRTHSQTSGWSLTAQDVFNNVGRTAIEAMAATQGHTQSLHTNALDEAIALPTDFSARIARNTQLLLQQESGTTQTIDPWAGSYYVEKLTHDLAERAWAHIQEAEAAGGMAAAIEQGIPKMRIEEAAARTQARIDSGAQKVIGVNTYRLAVEDKLDVLKVDNDDVYRQQIAKLERLRAERDQADVDDALHALTRAADNGDGNLLDLAVAAARNKATVGEISDALEKVYGRHQAVIRTISGVYRDEANEAGDTLLGQVREATDEFAEAEGRRPRILVAKMGQDGHDRGQKVVVSAFADMGFDVDVGPLFSTPEEVAQQAIDADVHIVGVSSLAAGHLTLLPALKNALAEQGRDDIMVVIGGVIPPDDVPTLKEMGAASVFLPGTVIAESALDLLAKLRADLDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V200</accession>
    <name>A0A0Q8V200_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Choline dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_15415</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GMC oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896548.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51483">
        <property type="protein sequence ID" value="KRC51483"/>
        <property type="gene ID" value="ASE19_15415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="543793at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012132">
        <property type="entry name" value="GMC_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11552">
        <property type="entry name" value="PTHR11552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000137">
        <property type="entry name" value="Alcohol_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="4">
        <location>
            <begin position="12"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="domain" description="GMC_oxred_C" evidence="5">
        <location>
            <begin position="405"/>
            <end position="541"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="105"/>
            <end position="108"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="232"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000137-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF05199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC51483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="551" mass="59431" checksum="CFB8E14756F441F9" modified="2016-01-20" version="1">MASKDLRSNEADYVVVGSGSSGAIVAGRLAQSGASVILLEAGKSDDKGLHGYMSKVPGMIGPMHSEPKLERLFDWGYRSVPQEGLDGRRMPAPRGKVGGGSSSVNGMVYVRGNRANYDSWAAEGNVGWDADSVNAAFKRYEDFEDGENEFRGAGGPIKITRNKTPQEATLQFIQATSDTLGVKVNDDYNGADQEGISRMQQNAADGLRYSSTRGYVHHLNPRTLEFQTEVHVEKVVIKDGRATGVEVLDEGRKGGTRRFIKAGKEVILSAGFINTPQLLMLSGIGPADHLSSLGLTVVQDLPVGDNLHDHLFHPMSFHVPSVTYRGNPWTFAKGTARNVVGRKSFLDNSVFESVGFIRSGLATDIPDIQLHALPWTYPSPNQDEPIRHMPDPRPGLTVFSTLIYPKSRGTIRLASADPHAAPLIDYGFFRHQDDVEVLAQGTEMIREIMASAAFGSGVKAEIHPGPSIPNGKELRVALKQRSTSVYHGVGTCRMGVDERAVVGPDLKVRGVEGLRVADASIMPSITGGNTNAPCYMIGEKAAEIILGGANW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3C9</accession>
    <name>A0A0Q8V3C9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cobalt transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17430</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_036544490.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48717">
        <property type="protein sequence ID" value="KRC48717"/>
        <property type="gene ID" value="ASE19_17430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2092143at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012667">
        <property type="entry name" value="CbtB_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09489">
        <property type="entry name" value="CbtB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="22"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="71" mass="7585" checksum="C399A89C19098ECB" modified="2016-01-20" version="1">MSQTTATPTAVVTVPVVPLLKLGTWVVFFGLLAMLAIFFVSADQGALSLPAGNAVHEWVHDARHLLGYPCH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3N2</accession>
    <name>A0A0Q8V3N2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15720</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893536.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50067">
        <property type="protein sequence ID" value="KRC50067"/>
        <property type="gene ID" value="ASE19_15720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="9"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="447"/>
            <end position="522"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="543" mass="58296" checksum="C6C4D3A5736A1C3A" modified="2016-01-20" version="1">MALNIADLFEHAVDAVPEKPAVQVGDSVITFAELEAESNKLAHYLRSQGIGTGDHVGLYAKNSIEHVIALIAILKVRAVSINVNFRYVAGELEYLFDNADLVGLVHDRVYAPLVAEVLPKVAPMKAVVAVPNPLEPDDASGIASYGGVTLAEAVAGQSDARDFGPRSPDDIHIIYTGGTTGFPKGVMWRHEDFWRVLGGGIDFMTAEPLEEYDQSKKALQDSLVTLPLSPLMHGGAQASLLMHLFAGQVTILEPKFDPVRTWELVDKHGVQMLFMTGDAMAVPLIDAYEAGGFDGQTLFAIASSAAIFSKSVKERWMKHFPNAVFTDSVGSSETGFQGTGLQDASALSTDGPVVSIPPTTVILGDDNQILDPVKDVGKVGRTARSGNVPVGYYKDPEKSAKTFIEIDGVRYSIPGDNARIEEGNRITLLGRGSNCINTGGEKVYPEEVEQAIKAHPGVYDVLVVGLPDEKYGQTVAAVVEQRPGHAVELEELRTFLRAHLSGYKLPRALTIVPEIPRNATGKAQYPRAKELALQSSTTVGASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3X1</accession>
    <name>A0A0Q8V3X1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_16180</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893615.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50147">
        <property type="protein sequence ID" value="KRC50147"/>
        <property type="gene ID" value="ASE19_16180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1155802at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04590">
        <property type="entry name" value="CBS_pair_CorC_HlyC_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002550">
        <property type="entry name" value="CNNM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044751">
        <property type="entry name" value="Ion_transp-like_CBS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01595">
        <property type="entry name" value="DUF21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51846">
        <property type="entry name" value="CNNM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5 7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="103"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="CNNM transmembrane" evidence="10">
        <location>
            <begin position="1"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="9">
        <location>
            <begin position="222"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="9">
        <location>
            <begin position="284"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC50147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="350" mass="37267" checksum="5514CB47AA18124A" modified="2016-01-20" version="1">MGDFGGVLLAVALLAANAFFVGAEFALISARRSQIEPRAQAGSRMAKITLTAMEQVSQMMAGAQLGITVCSLGLGAVGEPALAHLIEPVFHELHVPDEWLHPVAFVIAMTIVVFLHVVLGEMVPKNIAIAGPDRAALLLGPPMYGVVLVLRPLIVSINAVANAILRLVRIEPKDELGSTYTREEVAALVEESHGEGLLAEDEYDRLSGALGFTEKTVAEVTMTPDSLSTVVRGSTGADVEALCAATGFSRFPVTAEGELVGYLHIKDVLEPDEERRERPVADRWIRPFATVSSDTLLHDALEVLQRRGAHMARVVAADGTTLGVAALEDVIEELVGEIRDAAHSDDTATS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4R5</accession>
    <name>A0A0Q8V4R5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoribosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893852.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49121">
        <property type="protein sequence ID" value="KRC49121"/>
        <property type="gene ID" value="ASE19_18855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1819460at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="1">
        <location>
            <begin position="18"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="170" mass="18673" checksum="F5C10940200C1E2E" modified="2016-01-20" version="1">MTSDAPAAPEREVLTYELFGSAVRDLAQQVVDDGFEPDIVLAIARGGLGLAMGLGYALDVKNLSAVNVEFYTGVNERLDVPMMLPPTPAAIDLTGMRVLIADDVADTGKTLEVVRDFFVDHVAEARTAVIYEKPWTVIRPEYVWRRTEAWIDFPWSSTPPLVDRRGGGAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5G6</accession>
    <name>A0A0Q8V5G6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glutamate dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_09170</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3 7">Belongs to the Glu/Leu/Phe/Val dehydrogenases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894539.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52602">
        <property type="protein sequence ID" value="KRC52602"/>
        <property type="gene ID" value="ASE19_09170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004353">
        <property type="term" value="F:glutamate dehydrogenase [NAD(P)+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01076">
        <property type="entry name" value="NAD_bind_1_Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006095">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033524">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006096">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006097">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014362">
        <property type="entry name" value="Glu_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033922">
        <property type="entry name" value="NAD_bind_Glu_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00208">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02812">
        <property type="entry name" value="ELFV_dehydrog_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000185">
        <property type="entry name" value="Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00082">
        <property type="entry name" value="GLFDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00839">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00074">
        <property type="entry name" value="GLFV_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 3 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ELFV_dehydrog" evidence="8">
        <location>
            <begin position="192"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="4">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="356"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="6">
        <location>
            <position position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC52602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="423" mass="44942" checksum="0BD295AED44459D6" modified="2016-01-20" version="1">MSIDVAPPRTEVDSNPLGDALRQLRAACDRLGLDAGTYAMLATPRREMTVSIPLRRDSGEVEVLTGHRVQHNFSRGPAKGGLRYSPEVDLDEVRALAMWMTWKCALLDVPYGGAKGGVRIDPRNYSEDELQRVTRRYASEIGPIIGPSRDIPAPDIGTDEKTMAWIMDTHSVSVGHTVLGVVTGKPISLGGSLGRAMATSRGVVEVALAALDTLGLAPAATTAAVQGFGKVGRGAAELLAEAGVRVVAASDQYGGVHDPAGLDVPALCAHVDVTGSVVGFADPIDNADLLELEVDLLVPAAVEGVIHAGNADRIRARAVVEGANGPTSTDADQVLADRGVLVVPDILANAGGVVVSYFEWVQANQAYWWTEDEVNERLATRMQLAWQRVHERATSEGITLREAATCIAVERVAHAHHQRGLYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5M4</accession>
    <name>A0A0Q8V5M4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19335</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893444.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49042">
        <property type="protein sequence ID" value="KRC49042"/>
        <property type="gene ID" value="ASE19_19335"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1883350at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="99"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="158" mass="16742" checksum="B9573A2397BDEEA7" modified="2016-01-20" version="1">MTRSRGWGLPLVVLLLAVAGGAAYLLVGPDDSDDPFASYCDAVVDHREDIGAARSAGAETGLLRALPAFEELADEAPEDIRDEWRIVVDRVSDLRDALDDAGVDPASYDPEKPPEGLSADQRKAIRTAAVRLGAEDTAAALSGVEQQARDVCKTPLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5M6</accession>
    <name>A0A0Q8V5M6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Virulence factor Mce</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_09735</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894640.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52702">
        <property type="protein sequence ID" value="KRC52702"/>
        <property type="gene ID" value="ASE19_09735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="336531at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="38"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="123"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="349"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="44466" checksum="C81019153154B2CA" modified="2016-01-20" version="1">MNRILAAHKALGVIFVCLLLLGVWLTYAVFTKKFADYDKVTLTTSNVGLQLPSRADVKIRGVIVGEVLEARSGEEKGAVLTLGIYPDKIHEIPANVTGSIVPKTLFGEKYVSLVVPQTGPSGTIQAGAVIDRTQVATELEEVLSDIYPLLRTVRPADLNATLTALATALEGRGEQLGQNLETVDSYLKRINPQIPALLQDLKLTAQVSDTYADILPEVAQILDNTVTTTGTIEEREAALTATLRDIRSFSDTARSFLAANEDKLREAGELSTASLRAVARYSSTIPCMAAGIVKAQGRLADAFRGYELHIVLETLQAQPRKYNPKDAPIFGDDRGPNCLGLPDIPWSQDNPYPPLPRLNDGLSAPDGKGNLRPAPGYAGTPDDVTALRGALDAEYDAGTDLNVLLAGPAASGGGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5P9</accession>
    <name>A0A0Q8V5P9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cytochrome C biogenesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_10165</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52773">
        <property type="protein sequence ID" value="KRC52773"/>
        <property type="gene ID" value="ASE19_10165"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023494">
        <property type="entry name" value="Cyt_c_bgen_Ccs1/CcsB/ResB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007816">
        <property type="entry name" value="ResB-like_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31566">
        <property type="entry name" value="PTHR31566"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05140">
        <property type="entry name" value="ResB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="44"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="98"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="191"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="459"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="domain" description="ResB" evidence="8">
        <location>
            <begin position="41"/>
            <end position="513"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF05140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC52773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="529" mass="58449" checksum="7173B8049506E5EF" modified="2016-01-20" version="1">MDAAPPRRHLPGVGVSDQDRRPGELTARELLRWLWRQVTSMRTALMLLLLLALAAIPGSVIPQAGVDALKVTKWKDEHPKLTPVYEKLDLFSVYSSPWFSAIYLLLVLSLVGCIVPRLFVYYRALRAQPPVAPRNLTRMPVQASYRTELSVDEVLDRARSVLGKRHRLRAASAGDDYVAAERGYLREAGNLLFHLSVLVVLAGFAVGGLWGYQGGVIITEGSTFSNNLTQYDDFKPGGLFTTKQMKDFRFTVDEFDVEWIKKGPKTGQARKFEAHLSYHASQDAPEKHYDLRVNHPLEIDGTDVFLIGHGYAPVVTVRDGTGKITYTGPTPFLPQDASFLSFGVIKPPSTNPQIGLEGLFYPTFDFRNGNPVTVFGEDLNPTLSMLAYTGDLGYDSGRSQSVYVLDKMNAKQIEKDGKPVRVDLQIGDTFELPDGLGSVTFDRVDPWIRVQISQTPGKGVALVGVIMALVGLCASLFLRPRRVWVRAIPGTMDGSGETLVELAVLDRSGNGEMDEVLSTLLGQLKEDPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5Q4</accession>
    <name>A0A0Q8V5Q4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Carnitine dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09060</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894521.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52584">
        <property type="protein sequence ID" value="KRC52584"/>
        <property type="gene ID" value="ASE19_09060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="383" mass="40736" checksum="86E528C75742E93C" modified="2016-01-20" version="1">MRPLEGVRVVELAHVAAGPFAGMLLADLGADVVKVEPPTGDQMRAWPPFADDGEERFSHNFASVNRNKRSVVADLKDPDDLARVQQLVAAADVVVENYRPGVLDRLGLGYDAVRVGHPGLVYCSISGYGLSSPYVNDGAYDVVIQGMSGLMSVTGEAAGGPVKAGVPVGDFTAGLYAAYTIAALLPQVRGSGTSVRVDCPMLDCLLGVSALQTSEYWGSGVEPRRLGTAHPRNAPYQGFTAADGDFTVAAGNDRLWAAVAEVVGAPDLVQDPRFRTQLDRVHHQHELEGLLQERFAEEKRDHWLTALRERGVPCGPVNTFGEVLADPHVEATGLVGTLDVPVAGPTPTVLFPVRVEGLSPRLDRGAPRLGADDAVHDEWAAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5S3</accession>
    <name>A0A0Q8V5S3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutamine amidotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18340</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C56 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49106">
        <property type="protein sequence ID" value="KRC49106"/>
        <property type="gene ID" value="ASE19_18340"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006286">
        <property type="entry name" value="C56_PfpI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42733">
        <property type="entry name" value="PTHR42733"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01382">
        <property type="entry name" value="PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51276">
        <property type="entry name" value="PEPTIDASE_C56_PFPI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DJ-1_PfpI" evidence="2">
        <location>
            <begin position="3"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC49106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="181" mass="19269" checksum="140997A310F972DF" modified="2016-01-20" version="1">MAFLVAGEGIERVELDDPWKAVVDAGHEAVLVSPEDGSVQTFDHLDKADTRAVDVTVSDADAGDFDALVLPGGVANPDALRTDDGAVALVRSFMEQGKPVAAICHAPWTLIEADVVRDRRLTSWPSLQTDLRNAGATWVDERVVTDGNLITSRKPDDLPAFIASLVEALEHGADSARSADV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5T6</accession>
    <name>A0A0Q8V5T6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MPAB_Lcp_cat domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09230</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52612">
        <property type="protein sequence ID" value="KRC52612"/>
        <property type="gene ID" value="ASE19_09230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018713">
        <property type="entry name" value="MPAB/Lcp_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09995">
        <property type="entry name" value="MPAB_Lcp_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MPAB_Lcp_cat" evidence="1">
        <location>
            <begin position="26"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="313" mass="35232" checksum="E7EA0BA0EA589C58" modified="2016-01-20" version="1">MTDRIPAVPRKAPTTLAGTVTSLGNTSGVANIIMQLSLPAVGEGVSESRVTSGSPRRHPVKRGRTTGQYLALAVMGDDDDRTAMREAVAEVHRHVHSTPDSPVRYSGNAADLQLWVAACLFRFYLDQYTLLHGPLERDQLDVLTRAAQPLATGVNVRAADWPADWAAFEAYWAGMVPRLSISEEVRRDFESLADLSFLAEAWGLPGRLLSRVAGRTYHFLTRGNLPPEFRALMGWTWSTQDQRWFDRALRGLRLLDRLGNRVAIRMVYRLYVLDFRVRRRLGLPVLGRLKVSDVMVRDGGDQRWLARRTTRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V633</accession>
    <name>A0A0Q8V633_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">6-phosphogluconolactonase</fullName>
            <shortName evidence="7">6PGL</shortName>
            <ecNumber evidence="5 7">3.1.1.31</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pgl</name>
        <name evidence="9" type="ORF">ASE19_15885</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>6-phospho-D-glucono-1,5-lactone + H2O = 6-phospho-D-gluconate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12556"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57955"/>
            <dbReference type="ChEBI" id="CHEBI:58759"/>
            <dbReference type="EC" id="3.1.1.31"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 7">Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 2/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 7">Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. 6-phosphogluconolactonase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.31" evidence="5 7"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893563.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50096">
        <property type="protein sequence ID" value="KRC50096"/>
        <property type="gene ID" value="ASE19_15885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1828393at2"/>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00409"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017057">
        <property type="term" value="F:6-phosphogluconolactonase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01400">
        <property type="entry name" value="6PGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005900">
        <property type="entry name" value="6-phosphogluconolactonase_DevB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006148">
        <property type="entry name" value="Glc/Gal-6P_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039104">
        <property type="entry name" value="PGLS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11054">
        <property type="entry name" value="PTHR11054"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01182">
        <property type="entry name" value="Glucosamine_iso"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01198">
        <property type="entry name" value="pgl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glucosamine_iso" evidence="8">
        <location>
            <begin position="15"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00020337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC50096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="250" mass="25737" checksum="3DF3B0F1341313E7" modified="2016-01-20" version="1">MTSDRPAPLVEVHADAATLATAVAGELLNRIADAQAAGLVPDVGLTGGSIAEAIHREIARLADASGVDWGAVRFYFGDERFVPASSPDRNVGQARAAFLDEVGAHRVHAVPASDEVASAEDAAEAYAATIRATGTGDFDVLMLGVGPDGHIASLFPGHAGLDAVDAIAVAVHDSPKPPPDRVSLTFEALNRAQSVWFLVSGAAKADAVRRGLAELADDAEAAALRETPARGVRGTTETIWFLDSEAASAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6G7</accession>
    <name>A0A0Q8V6G7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_11455</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894934.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53004">
        <property type="protein sequence ID" value="KRC53004"/>
        <property type="gene ID" value="ASE19_11455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1254678at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="58"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="107"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="134"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="177"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="228"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="263"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="308"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="343" mass="35483" checksum="BAA58BED174B9883" modified="2016-01-20" version="1">MSTATLHPSQESAATRVVQTLLRSRELAIVIVLALILVVATTRRSSFVFSADGWRDTLLAPSILLLLAVGQMVVVVTRNVDLSVGSTLGITAYATGKIFVSNPETSVLVVFAAGLALGAVVGALNGLLVTVFKVPALVITLGTMYVLRGALTHEVGSDRMTAGDYPAHFEKLGNQQVLTIPVLTIIALVVVALVGYYLHTARGGRELYAIGSDPDAADLYGLPSGRRVLGAFVLCGALAGLAGVFSAARYATAFSGTGSGIELQAVAAVVIGGVAIFGGSGTVWGAAIGAFLLVTINRALPILGISEFWQGAVVGALIIGSIVLDRVLSIRRTHKLVEARDHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Q5</accession>
    <name>A0A0Q8V6Q5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex</fullName>
            <ecNumber evidence="3">2.3.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_10990</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>(R)-lipoate</name>
            <dbReference type="ChEBI" id="CHEBI:83088"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the 2-oxoacid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.-" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894855.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52923">
        <property type="protein sequence ID" value="KRC52923"/>
        <property type="gene ID" value="ASE19_10990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1626282at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001078">
        <property type="entry name" value="2-oxoacid_DH_actylTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036625">
        <property type="entry name" value="E3-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004167">
        <property type="entry name" value="PSBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00198">
        <property type="entry name" value="2-oxoacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02817">
        <property type="entry name" value="E3_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47005">
        <property type="entry name" value="SSF47005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51826">
        <property type="entry name" value="PSBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-0450">Lipoyl</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="5">
        <location>
            <begin position="4"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="Peripheral subunit-binding (PSBD)" evidence="6">
        <location>
            <begin position="144"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="114"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="429" mass="44704" checksum="2F8724E24A6D537E" modified="2016-01-20" version="1">MTGVNEFKLPDVGEGLTEAEIVAWRVKEGDVVAVNDVVVEIETAKSLVELPSPYAGVVLGLLAKEGETVQVGTPIIRIGDPSAAPAGPEVIDTNVPPVGDVTLVGYGPRQRTLKRRARKAAPSAVEEVAPRPSRDPGRGDTRALAKPLVRRLARDLGIDLAALTPTGPKGTVSKEDVLAAVGTFAPVVPSAVVAPPTGRETREPIKGVRKQMAAAMVASASAAPHATTWTTIDATATVELVARLKERRELAGVKVSPLLIAARACVLALGRNPLVNSTWDEAAQEVVIKHYVNLGIAAATPRGLVVPNIKDAQALPLADLAHELEVLTSTAREGRTQPHDLAGGSFTISNIGVFGVDGGTPIINPGESAILCLGAIKPQPWVVGGQVVPRHVMTLSLSFDHRHIDGATGTQFLADVAGMINDPGTALLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V756</accession>
    <name>A0A0Q8V756_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">AsnC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11725</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894981.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53051">
        <property type="protein sequence ID" value="KRC53051"/>
        <property type="gene ID" value="ASE19_11725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1844486at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13404">
        <property type="entry name" value="HTH_AsnC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="7"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="169" mass="18158" checksum="430C8D21DE617DD4" modified="2016-01-20" version="1">MDGPLTLDQVDIALLTALTEHPRAGDLELSRVTQVARATVQSRLRRLVEAGVIADWDPTLDVAAAGYEVQAYVTLEISQGALDEVTRDLAAIPQVLEAYVTTGSYDVLCRVATRSHPELQATLVRIDQSSSVVRSTSVMVLSVLIAPRVLPLLASAEPAPSRRAPAYRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V786</accession>
    <name>A0A0Q8V786_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12775</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895693.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53230">
        <property type="protein sequence ID" value="KRC53230"/>
        <property type="gene ID" value="ASE19_12775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359768" description="MlaD domain-containing protein" evidence="2">
        <location>
            <begin position="25"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="3">
        <location>
            <begin position="41"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="345"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="399" mass="41298" checksum="2B368EF61A9F8A75" modified="2016-01-20" version="1">MTTARTRALAAMLLAGGLLGSACDIQPNDNTLPGQVAVGDDGYTVTVHFDQIENLVPNSTVQKDDVVIGTVGEIDVEGWEAVVKLHLLDSVELPTDAMFSIGQKTLLGAQYVEVSAPTEARPRSGVLADGADLGVDHTGTYPATEQVLGAVALLLNNGGLSQISTITGELSTALRDKVPDTRGLIRHADELLAVLDANKGEIVRALESLNSLSAGLREDQTTIATAIDRITPGLEVLETERARLVNALTHTGRAGDRAVRVVRASESALLANLDALGPILSRLGRVSASLPDALKIGITIPFPAMTASEALRGDYANLFATIDLSAAGLADTWLGGLSPALQAGDPVENPLVQAPDAPTSGSGGATDGPSDGPEPTEEPSVPTPTEEPKPCLLRILGIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7B0</accession>
    <name>A0A0Q8V7B0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LLM class F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11850</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895006.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53076">
        <property type="protein sequence ID" value="KRC53076"/>
        <property type="gene ID" value="ASE19_11850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019951">
        <property type="entry name" value="F420_OxRdatse_Rv3520c_pred"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03559">
        <property type="entry name" value="F420_Rv3520c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="8"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="347" mass="37911" checksum="CDD233A04F0B6A85" modified="2016-01-20" version="1">MRLGMILSHTDDFEETADLLQDYEKAGLQLAAVGESYSFDAVSRLGFLAARTKTVEIASAILQVYSRTPALLAMTAAGLDHVSNGRFTLGIGASGPQVVEGFHGVPYDAPLGRSREVVEVCRKVWRREPLEHEGKHYRIPLPPEQGTGLGKPLKLINHPVRERIPISIAALGPANVALVAELAESWQPLFFHPQHAGTAWGEALDKGFAKRDPELGPLDIMLQLSFAVAEPTEEVLRPIREQLALYIGGMGARDKNFYNQLARRYGYDSEATEIQELYLAGRKQDAAKAVPDDLVRAVSLVGTEEDIADQVKEFAAAGVTTLLLKPLAVDPSRRVSDVATLSTILRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7D2</accession>
    <name>A0A0Q8V7D2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADPH:quinone reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12085</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895042.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53115">
        <property type="protein sequence ID" value="KRC53115"/>
        <property type="gene ID" value="ASE19_12085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1027479at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="24"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="340" mass="35373" checksum="395B81CEFCC2B81E" modified="2016-01-20" version="1">MVRPKPAGDVLPVTMRAVVVTRPGGLDVLEIKDVPVPTRGAGWVRIKVQAFGVNESEVLTRKGESDAEVTYPRVPGIECVGVVDEADGASGLQPGQQVATMMGGMGRAYDGAYAEYVSVPAAQVIRFETDLPWEVVGALPEMFQTAYGSLATGLDLQAGQTLLIRGGTSTVGLSAAAIAKELGATVLSTTRSADRAEDLRAVGVDHVLVDTGAVADQVRELAPAGVDAALELVGCSALADTLATVRRHGTVCFTGALAGQWSIPDFSPFMIPSGVRLTSYAGTAADLPEDALARQLEAIAEGRIEVPIAKVYRGLEQVRDAQADVEAGGMPGKHVVVLDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7K2</accession>
    <name>A0A0Q8V7K2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">GntR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13400</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895804.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53342">
        <property type="protein sequence ID" value="KRC53342"/>
        <property type="gene ID" value="ASE19_13400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1875458at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="9"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="243" mass="25924" checksum="2A6AE66D4C2EA885" modified="2016-01-20" version="1">MALRPVTRRSVADQVFDQVLDDVLDGELAVGEPLPSERRLAEVLGISRPAVREALQRIAQTGLVEVRHGGATMVRDFRRSAGLDLLPRLLVRGGRLDAAVARSVVEARAEVGPGIAARAAERGGPVLAAALDRVIEELAATDDTVRWQELALDYWDLLVDGADSLVFRLMFNSLRTAYEPALPVLAAVLGEEVGQVEPYRMLAAAVRAGDAATARAAAARVLTPTADALLAAFAALETTEESR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7M2</accession>
    <name>A0A0Q8V7M2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">NERD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_13470</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53356">
        <property type="protein sequence ID" value="KRC53356"/>
        <property type="gene ID" value="ASE19_13470"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011528">
        <property type="entry name" value="NERD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08378">
        <property type="entry name" value="NERD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359773" description="NERD domain-containing protein" evidence="2">
        <location>
            <begin position="31"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="241"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="265"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="294"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="domain" description="NERD" evidence="3">
        <location>
            <begin position="62"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="318" mass="34120" checksum="695019BF1AAFFB22" modified="2016-01-20" version="1">MAQRRWRILLVVPLMCTPLAALPLMPNSFAQGIIVGVIAAGVPAGIWNITVSSTSTSMAMMGDEAERWTAQELRRAIRGDATSYLVNRVPFGGHDIDHVLMTPAGLFIVETKWSSEPWSNRPGMDRQQSAREQVEGVARKLTLWADLKALLAAHAVPVTRIVALWGGDRTETIEPQSVGGTAVMHGSEVKRWIRAQPAAGSDGLWRDEAWSALSRLIEKRERHDPTLTEVPRSLTDHLSRIGVTTASAVVIFLGLSTTFTSTHSALALIAGTIPTACIAVILRRRRLITPLANGALIATGAVAVLLLIAAAAAAATLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7M8</accession>
    <name>A0A0Q8V7M8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Lysine N-acyltransferase MbtK</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Mycobactin synthase protein K</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_12545</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Acyltransferase required for the direct transfer of medium- to long-chain fatty acyl moieties from a carrier protein (MbtL) on to the epsilon-amino group of lysine residue in the mycobactin core.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Siderophore biosynthesis; mycobactin biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895122.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53195">
        <property type="protein sequence ID" value="KRC53195"/>
        <property type="gene ID" value="ASE19_12545"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00011"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019290">
        <property type="term" value="P:siderophore biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019432">
        <property type="entry name" value="Acyltransferase_MbtK/IucB-like"/>
    </dbReference>
    <dbReference type="SMART" id="SM01006">
        <property type="entry name" value="AlcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AlcB" evidence="5">
        <location>
            <begin position="6"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00020586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00031122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM01006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="178" mass="19424" checksum="BCCECE41F534F371" modified="2016-01-20" version="1">MTVTVRPVDPEADAALLTAWVTADRAAFWGMADLGEEDVAAVYRYIHEQEHLAAYLLVLDGDPVGLLQTYDPAVDEIGEWYDRRPGDVGVHLLLAGDPRRAGRTPEVIAAGMDFVAHVPGCRRLVLEPDARNTASVGLLERLGAERGPLVELRTSIAEKPAQFFFIDREQALAIAGVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7T4</accession>
    <name>A0A0Q8V7T4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12845</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895705.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53243">
        <property type="protein sequence ID" value="KRC53243"/>
        <property type="gene ID" value="ASE19_12845"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="108" mass="11902" checksum="5B8E54D74FB47795" modified="2016-01-20" version="1">MPRQYLDDAHGPDGIRVSIAVERASARLDRAQGRGLPNLLPSSSTVRSWAGRLLAELGWQGAWVVDVESDSGVRTRLKRADRHEAMTLAQQVWREVSERGVAALDDLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8D0</accession>
    <name>A0A0Q8V8D0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">5'-3' exonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16450</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893663.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50194">
        <property type="protein sequence ID" value="KRC50194"/>
        <property type="gene ID" value="ASE19_16450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1220182at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017108">
        <property type="term" value="F:5'-flap endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033567">
        <property type="term" value="P:DNA replication, Okazaki fragment processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09898">
        <property type="entry name" value="H3TH_53EXO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020046">
        <property type="entry name" value="5-3_exonucl_a-hlix_arch_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002421">
        <property type="entry name" value="5-3_exonuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036279">
        <property type="entry name" value="5-3_exonuclease_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020045">
        <property type="entry name" value="DNA_polI_H3TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038969">
        <property type="entry name" value="FEN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008918">
        <property type="entry name" value="HhH2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42646">
        <property type="entry name" value="PTHR42646"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01367">
        <property type="entry name" value="5_3_exonuc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02739">
        <property type="entry name" value="5_3_exonuc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00475">
        <property type="entry name" value="53EXOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00279">
        <property type="entry name" value="HhH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47807">
        <property type="entry name" value="SSF47807"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="53EXOc" evidence="2">
        <location>
            <begin position="3"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="34810" checksum="494C20F5A208D280" modified="2016-01-20" version="1">MTERLLLLDTASLYFRAFFGSPEILSPGGTNVNAVRGLLDYISRLTEQYEPTHLVCCWDDDWRPQWRVDLIPTYKAHRVVEEVAGAPVAEGSGERSDRRYVEEVPDPLEQQVPIIREVLDAFGIAVIGAPGYEADDVIGTLATGAGMPVDVVTGDRDLFQLVDDEAAVRILYVGRGVGRHERVDEAWVLEKYGVRAGQYADFATLRGDASDGLPGVKGVGEKTAASLLQKYDDIAGIRAAVEDPSSDLGPGPRLKIRDASDYLDVAPTVVAVARDIDLPRDHLALPKAPADADRLAGLVEEWGLATPVARLTGVLAGLDGPAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8K2</accession>
    <name>A0A0Q8V8K2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">NADH:ubiquinone oxidoreductase subunit L</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_10005</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Membrane</location>
            <topology evidence="1 5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53610">
        <property type="protein sequence ID" value="KRC53610"/>
        <property type="gene ID" value="ASE19_10005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1274678at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018393">
        <property type="entry name" value="NADHpl_OxRdtase_5_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001750">
        <property type="entry name" value="ND/Mrp_mem"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003945">
        <property type="entry name" value="NU5C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001516">
        <property type="entry name" value="Proton_antipo_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42829">
        <property type="entry name" value="PTHR42829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00361">
        <property type="entry name" value="Proton_antipo_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00662">
        <property type="entry name" value="Proton_antipo_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01974">
        <property type="entry name" value="NDH_I_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="9" id="KW-0830">Ubiquinone</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="43"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="96"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="128"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="191"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="258"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="288"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="325"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="383"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="422"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="464"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="508"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="612"/>
            <end position="630"/>
        </location>
    </feature>
    <feature type="domain" description="Proton_antipo_N" evidence="8">
        <location>
            <begin position="79"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="Proton_antipo_M" evidence="7">
        <location>
            <begin position="145"/>
            <end position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="631" mass="66851" checksum="7953BD81560CA7B6" modified="2016-01-20" version="1">MVAPQEADGIFNLLWLIIALPLLGATALLLLGNRRTQAYGHWVGLATITGSFVLSLVSFLTLLGRDEDERQVAKHLWTWIEAGRLDVGLDLLYDPLAALFLLLITGVGALIHLYSVGYMAHDPRRSRFFAYLNLFVAAMLMLILSENYVGLFLGWEGVGLASYLLIGFWQHKPSAAAAAKKAFVINRVGDMGLGLAIFLMFATFGTTSFSGVSALAGGATETTLNWIGVLLLVGACGKSAQVPLQAWLLDAMEGPTPVSALIHAATMVTAGVYLVTRSNFIFELAPTAQTAVVIVATVTLLWGAIIGCAKDDIKKGLAGSTMSQIGYMMLGAGLGVAGYAFAIFHLLTHGFFKANMFLGAGSVMHAMDDDVDMRHYGALQKTLPITFATFALGFLAIIGVPPFAGFWSKDKIIETALVENPVVGICALLGAGVTGFYMTRMMLMTFFTQKRWEKGVHPHESPKVMTIPLIVLAALSALGGLMLAGNWIVDWLSPVVGHAEHEEPPLPVIVITLITVAVVAAGVALAWVLVGKQKVPNVAPADVSFATRAARADLYGDAINDAVVVNAGKALVRASTAGDRSIVDGLFTGGAVIVAGSGELLRRLQNGYVRSYALGILGGAVLLVLTLVVVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8L4</accession>
    <name>A0A0Q8V8L4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14600</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896947.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53694">
        <property type="protein sequence ID" value="KRC53694"/>
        <property type="gene ID" value="ASE19_14600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1841820at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037079">
        <property type="entry name" value="AF2212/PG0164-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015018">
        <property type="entry name" value="DUF1905"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08922">
        <property type="entry name" value="DUF1905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="100" mass="10721" checksum="5439D46362A76902" modified="2016-01-20" version="1">MSTSQEPSGVGPLDITFTETLRRSEAKGGWTYVVWPQSAEQFGTRGRVKVRGTIDGTPFESSFMALGDGNHKLPVASALRVDTGKAAGDTVEVHLTERLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8Q7</accession>
    <name>A0A0Q8V8Q7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Potassium-transporting ATPase KdpC subunit</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">ATP phosphohydrolase [potassium-transporting] C chain</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Potassium-binding and translocating subunit C</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Potassium-translocating ATPase C chain</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">kdpC</name>
        <name evidence="12" type="ORF">ASE19_14320</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">The system is composed of three essential subunits: KdpA, KdpB and KdpC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cell membrane</location>
            <topology evidence="11">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the KdpC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896995.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53508">
        <property type="protein sequence ID" value="KRC53508"/>
        <property type="gene ID" value="ASE19_14320"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1912405at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008556">
        <property type="term" value="F:P-type potassium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00276">
        <property type="entry name" value="KdpC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003820">
        <property type="entry name" value="KdpC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30042">
        <property type="entry name" value="PTHR30042"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02669">
        <property type="entry name" value="KdpC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001296">
        <property type="entry name" value="K_ATPase_KdpC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00681">
        <property type="entry name" value="kdpC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 11" id="KW-0406">Ion transport</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 11" id="KW-0630">Potassium</keyword>
    <keyword evidence="3 11" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 11" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC53508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="200" mass="20536" checksum="616043718BD8CC06" modified="2016-01-20" version="1">MSTSSLLRGGLTQLVAAARVLAVMTVLLGLAYPLALTGFAQAVVPDRADGSRIERDGAVVGSSLIGQSFTGDAAYFQSRPSAAGDGYDPLASSASNLSPANPDLVAAVRQRIADVAAFDGVEPADVAPDAVLASGSGLDPHISPEYADQQVARVARTRGLSQAQVRELVADHTAGRTLGFLGEPRVNVLELNLALDGLED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8S6</accession>
    <name>A0A0Q8V8S6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14385</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896984.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53519">
        <property type="protein sequence ID" value="KRC53519"/>
        <property type="gene ID" value="ASE19_14385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1392898at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="212" mass="23721" checksum="807A5BD7BBEC3145" modified="2016-01-20" version="1">MVDALAEGAPAEVAEESSYERFGVNWVRRVLHRERILRTIDQLLGDQISLGPIGAGPGRAFASVSFTGTFGPTTGSELPGALLSYAIDLPISVVFQLDLPMDKLHFNAEVVIPLVLVVHTEEPLKLRLELQTPAEDQIGLELKTDTRRGAVLRKMTGLDSELRRFVLKVIDTELSKPYVKRAMYLDMEELIDHAWPMLSETFLPQRPEDRQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9G0</accession>
    <name>A0A0Q8V9G0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">LytR_cpsA_psr domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_06905</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LytR/CpsA/Psr (LCP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895245.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53814">
        <property type="protein sequence ID" value="KRC53814"/>
        <property type="gene ID" value="ASE19_06905"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004474">
        <property type="entry name" value="LytR_CpsA_psr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03816">
        <property type="entry name" value="LytR_cpsA_psr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00350">
        <property type="entry name" value="lytR_cpsA_psr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="28"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="domain" description="LytR_cpsA_psr" evidence="4">
        <location>
            <begin position="110"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="358"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="366"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="396"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="423" mass="44897" checksum="E5964E998730EF1F" modified="2016-01-20" version="1">MSTSREVRRSRGSRARGRRKAPQPGKTVFKVIASSLLSLGLLTGIGVVVLYNNLNGNIDHKEIAAQLGNDRPAKEKVAGPQEPLNVLVMGSDSRAGKGNGIDGESGGGLSDTTILFHLSANRKFAYGISIPRDSAVMRPTCYKEDGSEIAGTSGYVKWNEAFAAGGPACTWRQLEQLSGIRIDNYVVVDFNQFKDMVNALDGVEVCIPEDIDDPNHQVHLKAGTREIHGKEALTYVRARYRIGDGTDPNRTRRQQAFIGSMINKALTAGMLARPDRLIRFMNAATSSLQTDFDGIAQMVDIAATAKGIGADNIKFVTTPWVYSDKVSAGIEWTPEVQKLWRLVRKDKPLTAEFLKDALSAGDSPDGTPSAGGTGSSSTGGASSTATDKASDEATDKATDPATNGTTDGSSGLSSEGRAAAGLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9M9</accession>
    <name>A0A0Q8V9M9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Cyclic pyranopterin monophosphate synthase</fullName>
            <ecNumber evidence="3 5">4.6.1.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Molybdenum cofactor biosynthesis protein C</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">moaC</name>
        <name evidence="7" type="ORF">ASE19_06865</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the conversion of (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>(8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate = cyclic pyranopterin phosphate + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:49580"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:59648"/>
            <dbReference type="ChEBI" id="CHEBI:131766"/>
            <dbReference type="EC" id="4.6.1.17"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homohexamer; trimer of dimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the MoaC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.6.1.17" evidence="3 5"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895238.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53807">
        <property type="protein sequence ID" value="KRC53807"/>
        <property type="gene ID" value="ASE19_06865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1595361at2"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061799">
        <property type="term" value="F:cyclic pyranopterin monophosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01420">
        <property type="entry name" value="MoaC_PE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.640">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01224_B">
        <property type="entry name" value="MoaC_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023045">
        <property type="entry name" value="Mo_CF_biosynth-C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036522">
        <property type="entry name" value="MoaC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002820">
        <property type="entry name" value="Mopterin_CF_biosynth-C_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01967">
        <property type="entry name" value="MoaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55040">
        <property type="entry name" value="SSF55040"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00581">
        <property type="entry name" value="moaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 5" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MoaC" evidence="6">
        <location>
            <begin position="16"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="76"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="112"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="156" mass="15970" checksum="9F1D3A0FDEE83790" modified="2016-01-20" version="1">MADRLTHVDETGAARMVDVSAKDVTTRVARASGRVLVSTEVIALLRGEGVPKGDALAVARIAGIMGAKQTPALIPLCHPLAISGVTVDLAVADDAVEIAATVKTTDRTGVEMEALTAVTVAALTVIDMVKAVDKGAVITDVRVEAKSGGKSGDWAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9N5</accession>
    <name>A0A0Q8V9N5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14860</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896440.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51373">
        <property type="protein sequence ID" value="KRC51373"/>
        <property type="gene ID" value="ASE19_14860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1890756at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023204">
        <property type="entry name" value="SP1917_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014580">
        <property type="entry name" value="UCP033199"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09966">
        <property type="entry name" value="DUF2200"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033199">
        <property type="entry name" value="UCP033199"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="116" mass="13046" checksum="288C2AD3455E89EF" modified="2016-01-20" version="1">MHRIFTTSVASVYPHYVTKVERKGRTQAELDEVITWLTGYDEAALRHHLDAGTTFEDFFAQAALNPDAGLITGVVCGIRVEDVEDPLMQRIRYLDKLVDELAKGKAMEKVLRSPTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9U5</accession>
    <name>A0A0Q8V9U5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Dihydropteroate synthase</fullName>
            <shortName evidence="1">DHPS</shortName>
            <ecNumber evidence="1">2.5.1.15</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Dihydropteroate pyrophosphorylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09430</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; tetrahydrofolate biosynthesis; 7,8-dihydrofolate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DHPS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.15" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894587.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52649">
        <property type="protein sequence ID" value="KRC52649"/>
        <property type="gene ID" value="ASE19_09430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275854at2"/>
    <dbReference type="UniPathway" id="UPA00077">
        <property type="reaction ID" value="UER00156"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004156">
        <property type="term" value="F:dihydropteroate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046656">
        <property type="term" value="P:folic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045031">
        <property type="entry name" value="DHP_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006390">
        <property type="entry name" value="DHP_synth_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000489">
        <property type="entry name" value="Pterin-binding_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20941">
        <property type="entry name" value="PTHR20941"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00809">
        <property type="entry name" value="Pterin_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="SSF51717"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01496">
        <property type="entry name" value="DHPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00792">
        <property type="entry name" value="DHPS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00793">
        <property type="entry name" value="DHPS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50972">
        <property type="entry name" value="PTERIN_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0289">Folate biosynthesis</keyword>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pterin-binding" evidence="2">
        <location>
            <begin position="13"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU361205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="285" mass="30361" checksum="B5740394867804D2" modified="2016-01-20" version="1">MKLGRHAFGDDEALMMAIVNRTPDSFFDKGATWAEDAAFARVAEVVAQGAEIVDIGGIKAAPGVEISAAEEKARVVDFVARVRDSYPGLVISVDTWRAEVGAAVCAAGADVLNDAWGGADPELVDVAAEYDAAIICTHTGGVTPRTRPYRIDYDDVVAAAIADTVAYASRALSAGVARESIVIDPAHDFGKNTFHSLEITRRLDEMVATGWPVLVSLSNKDFVGETLGREVGDRLLGTLAATSVCALAGARIYRVHQVPETRQTVDMVWSIAGRRPPLRAIRGLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9X3</accession>
    <name>A0A0Q8V9X3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07360</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53892">
        <property type="protein sequence ID" value="KRC53892"/>
        <property type="gene ID" value="ASE19_07360"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1878940at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="24109" checksum="FCDBEABDF61122B0" modified="2016-01-20" version="1">MFLLPPSGLKIRLLNRLGHQIHPTAVIGICLVRRVERFEVGERSLIHHFNLFRDLRLVKLGEGCRIMLFNQVVGDSGYEPGAEQTENLRTLRLGDFSHIISQHYLDCGGGVVLGNETWVTGIRSTLLSHAFDPTNGGVILDPVTIGDRAVVATSCTMLPGTTIGEGALIAAGSTTWTGQEAKGGHLHGGVPARRLAAIDIPAHVYLRARHPGATGVVAPPNPPSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA43</accession>
    <name>A0A0Q8VA43_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SCP_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07780</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895398.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53967">
        <property type="protein sequence ID" value="KRC53967"/>
        <property type="gene ID" value="ASE19_07780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1745973at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041629">
        <property type="entry name" value="SCP_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17844">
        <property type="entry name" value="SCP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SCP_3" evidence="1">
        <location>
            <begin position="26"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="119" mass="12587" checksum="18E19737A8172D17" modified="2016-01-20" version="1">MPARLKPAAPADVAAALARVADATAERADLKLLVKHFLAVLETRAPGRSVEVRVPPYAAVQVIEGVRHTRGTPPAVVETDAATWIAVATGELAWLDAVEAGRVQASGERTDLTSYLPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA61</accession>
    <name>A0A0Q8VA61_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Spermidine/putrescine ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_15920</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50103">
        <property type="protein sequence ID" value="KRC50103"/>
        <property type="gene ID" value="ASE19_15920"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="7"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="39"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="311" mass="33524" checksum="564D832FEA495B10" modified="2016-01-20" version="1">MPDGPAVLVDGLVMRYDERTAVDGLSFEVESHTITAVLGPNGAGKTTTLETCEGYRRAQAGTVRVLGLDPVRERSALLPRIGVMLQSGGAWSGARADEMLRHFARLHAHPLPVDLLMERLALHECGRTPYRRLSGGQQQRLGLALALVGRPELVFVDEPTAGLDPQIRRGVWELLEELRADGVTVVLTTHYLEEAERLADKVHIMDKGRLVASGTPLELTRGGTVATIRLVVTQPFPPGSPEALAAALGENTELTVLDPLSLQVSGPADGSTLAKVAAWCADHDVLPESLSLGQRNLEDVFLELTGREDFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAD3</accession>
    <name>A0A0Q8VAD3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08665</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895550.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54118">
        <property type="protein sequence ID" value="KRC54118"/>
        <property type="gene ID" value="ASE19_08665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="198" mass="21552" checksum="B593624EC12B02B3" modified="2016-01-20" version="1">MTTKGERTRRRILEVVVHLLETRSFGEISIAEITRRAEVTRPAFYFHFPTKGAVVAAVLEDLLDEYVGVAAAWYEHPGDDPASGVAEALAATVDLWRANARLMDAMVRAAAVDEEAAQLVGAWEAHLTERATDRLRRDLGPRLASGSPSVESLAQLLVGATFDAMRRDVRSIVGSGEPRPEVAAALAHVWLRVVTAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAG0</accession>
    <name>A0A0Q8VAG0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ESAT-6-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08430</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the WXG100 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895511.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54079">
        <property type="protein sequence ID" value="KRC54079"/>
        <property type="gene ID" value="ASE19_08430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1930308at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036689">
        <property type="entry name" value="ESAT-6-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010310">
        <property type="entry name" value="T7SS_ESAT-6-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06013">
        <property type="entry name" value="WXG100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140453">
        <property type="entry name" value="SSF140453"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03930">
        <property type="entry name" value="WXG100_ESAT6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU362001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="98" mass="11152" checksum="ABF455AE6F8723CF" modified="2016-01-20" version="1">MSLDGLRVNHSELEAAAQSMYSTVKKMEETLTSLENDIQPKVSTWSGDQQDAYRTSKAAWDFAINELKDLLDQSHQTVYQSNDEYRAADKRGAGRFDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAH5</accession>
    <name>A0A0Q8VAH5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Stearoyl-CoA 9-desaturase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_10710</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895175.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52873">
        <property type="protein sequence ID" value="KRC52873"/>
        <property type="gene ID" value="ASE19_10710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1885467at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="6">
        <location>
            <begin position="56"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="5">
        <location>
            <begin position="298"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="388" mass="40860" checksum="6A15897049471286" modified="2016-01-20" version="1">MSLAADVGSLDVVSTTTARPRTGRLTGGLRNLLDAAVTPLSVDDLLDHFAPLRPAATGLQGRIVAVDAETADAATIVIKPGRDWAGHIPGQYVRVGVDVDGVRLWRTYSLTHGPRRDGRISITVKAIPGGAVSQHLVRTAKVGQMVQLAQAEGDFVLTPPANGAKHKLLLVTAGSGITPVIGMLRNLYSRNEDEARAAYDIVLVHSAMKRDEVIFGPELRAHADAGRLRLVERHTDTDGLLTMSDLEAEVPDLAERTAYACGPAGLLDTLEAFYDERRLTLHTERFRPTVVATGAEGGTISFTGPSGTTVEVDGATPILDAAESAGVLMPSGCRIGICMGCVLPMKSGAVRDLRNGELTVAVPGETHPDGVPIQTCISAAAGDCHIDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAK3</accession>
    <name>A0A0Q8VAK3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-oxoacyl-ACP reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16930</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893748.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50279">
        <property type="protein sequence ID" value="KRC50279"/>
        <property type="gene ID" value="ASE19_16930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="236" mass="24220" checksum="E719CF5358B87F5D" modified="2016-01-20" version="1">MNEPRSVLVTGGNRGIGRAIAEAFLANGDKVAVTTRSGGAPDGALELKADITDAAQVEAAFAAAEQAHGPVEVLVANAGITADTLVLRMSDEDWDSVIATNLTGSFRLAKRAAKGMLRQRKGRIIFISSVVGLLGSPGQVNYAASKAGLVGMARSLARELGPRSITANVVAPGYVDTDMTAVLSDDQKEAIRGQVPLGRYADPKEVAGTVLWLAGPDAAYVTGAVIPVDGGLGMGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCA4</accession>
    <name>A0A0Q8VCA4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-oxoacyl-ACP reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04415</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894350.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54731">
        <property type="protein sequence ID" value="KRC54731"/>
        <property type="gene ID" value="ASE19_04415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="251" mass="25659" checksum="734C62873FB32D7F" modified="2016-01-20" version="1">MDYNRIAIVTGAARGIGAAVARRLASDGMAVAVLDLDESACIGVADSIKAAGGRSMAIGADVADESAVLHAVDRVVGELGAPTVLVNNAGIIRDNLLFRMSVEDWDAVMNVHLRGAFLMSRTAQAHMTKAGFGRIINLSSASAVGNRGQANYAAAKAGIQGFTKTLANELGKFGVTANAIAPGFIETEMTVATAERMGVSFENFKAEIAAQIPVGRTGCPADIAHAASFFASEAAGFVSGQVLYVAGGPVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCH7</accession>
    <name>A0A0Q8VCH7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH hxlR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04440</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894346.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54735">
        <property type="protein sequence ID" value="KRC54735"/>
        <property type="gene ID" value="ASE19_04440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2057904at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="15"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="125" mass="13800" checksum="B1A315F3AD0936E4" modified="2016-01-20" version="1">MGYRHNVTNSSLPECGVARFLALVNGPWATLVVRELLPGPLRFTELRAALPGISPHTLTSRLRQFEAYGIVTRTSYPEIPPRVVYQLTPHGERLRDVLDTMSAWAMSIEIADASDDDQAAAPQAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCW5</accession>
    <name>A0A0Q8VCW5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05630</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894147.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54934">
        <property type="protein sequence ID" value="KRC54934"/>
        <property type="gene ID" value="ASE19_05630"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="33"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="236" mass="26611" checksum="C55608B76D6EC56A" modified="2016-01-20" version="1">MVTNAFGQAVGDEVPGWEPRPWPEPIVLTGRYVELRPLSSAHYADLFAATCGPDDDDLWTYRPVPRPTSLADLWMHLAAHVDADDMVTFALVPLEGERAGKATGIASYLRIEPAHGQIEVAGVLLGRSLQRTRAATEAIHLLMRYAFDDLGYRRFEWKCDSLNEPSRRAAQRLGFVEEGRFRNHMVTQGRNRDTDWFSVTDGEWPAVRSAHERWLDPANFDDAGAQLTSLRDHLAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD01</accession>
    <name>A0A0Q8VD01_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06010</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894078.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54996">
        <property type="protein sequence ID" value="KRC54996"/>
        <property type="gene ID" value="ASE19_06010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1452155at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="2">
        <location>
            <begin position="31"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="289" mass="30322" checksum="ACA43F5240470114" modified="2016-01-20" version="1">MARIDVRKTYKLYIGGAFPRSESGYSYEVTDSKGKFVANASLASRKDVRDAVVAARKAAPGWAGRTAYNRGQVLYRIAEVMEDRRPQFEEAVRQSEGVSAAAARGQVDAAVDRLVWYAGWADKLAQVIGNANPVAGPFFNHTAPEATGVVGVLAPQSSSLLGLVSVVAPVIVTGNVAVVVSSYARPLPAVTFSEVLATSDVPGGVVNILTGDATALGPWLAAHMDVNAIDLAGVAGSPELATSLEVAAADNLKRVRRAPDAEPDWTAEPGLAAMTAFVEQKTVWHPIGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDI2</accession>
    <name>A0A0Q8VDI2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">MFS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_10140</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894701.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52768">
        <property type="protein sequence ID" value="KRC52768"/>
        <property type="gene ID" value="ASE19_10140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1452500at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="27"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="55"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="94"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="173"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="231"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="268"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="302"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="390"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="18"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="429" mass="45254" checksum="9C48A9364FC1985F" modified="2016-01-20" version="1">MSRHLPDKIARLAGPTPLVRRLSAQSVLSAFGDGVFLTGSAVFFTQIVGLSAAQVGLGLSIAGAVTFVLAVPLGKLSDRFGAKRVWALSSLVEALLYLAWLAVGGFATFVAMLVVLELVATASRSARNAYRFDIFPREERVSSNAYFRAARNVGYTLGALLAGIALATNSDDVIRAVPLATAALLVLNAVLVSRLPSAVHHVEEAPLEAALETVLDGGGGDSRSALRNKGYVAMAILGGILGTHQVLLNVVIPLWLVEETDAPRVLLAWLFGTNTVMAVLLQVAAARGITTVADSLKAQRRGAFFFVLSCGIVLVTHDTVGWVTIVLVWVGHVTVTGAELYQSAGEWGLQAELSDPARRGEYQGVSQLGYTLGTVWAPALYTFLAMHWGAQGWLVIAAIVLVAAVLIHPAARAAERHLTRVGVAAPEPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDN1</accession>
    <name>A0A0Q8VDN1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF58 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06635</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894505.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55103">
        <property type="protein sequence ID" value="KRC55103"/>
        <property type="gene ID" value="ASE19_06635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="848990at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002881">
        <property type="entry name" value="DUF58"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01882">
        <property type="entry name" value="DUF58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF58" evidence="1">
        <location>
            <begin position="36"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="296" mass="33052" checksum="C8A81E354F05B1D2" modified="2016-01-20" version="1">MPAHLTRIKTRLSIHAHRKVRGLLEGEYAALHVGRGIDFNDLREYVRGDDVKDIDWKASARGRQLLVKRYVAERKHTVLLCVSTGRSMAAMNDAAVGKRELAVFVSGLMGLLAVRHGDLVSLVRGDAAEQHAERPRGGELHLERLLGGIHDAIRPDGSAADLTALLRYVARTVHRRTILVIVCDDTSVPDEAADLLRRLTVQHEVLLLTIGDLDPTLPAVAERRLVDVDTAAEVPGWLRHDRQLRRELAALVGAEEASLRRRLDQLGVVHERVHDTDSAVAAVFRLLERQRHARRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF09</accession>
    <name>A0A0Q8VF09_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12360</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895092.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53165">
        <property type="protein sequence ID" value="KRC53165"/>
        <property type="gene ID" value="ASE19_12360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359978" evidence="1">
        <location>
            <begin position="23"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="147" mass="15319" checksum="4DC838066704D3AD" modified="2016-01-20" version="1">MALTRATLAALLVVTLPLTGCAALRNEWSGKHGGPDIDAEVRTAVRNALPKATDVSVGTHKNGFTQEMDVEVTYPDGTFDQDDLLTAARAICGAATLTDDVFLEVTDGSTRTALDLASLASGDAAALDTPYEPTQVQIEVEGDCPGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFC8</accession>
    <name>A0A0Q8VFC8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH iclR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13135</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895758.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53296">
        <property type="protein sequence ID" value="KRC53296"/>
        <property type="gene ID" value="ASE19_13135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="370329at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="1">
        <location>
            <begin position="12"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="102" mass="10959" checksum="1FF6F5DDF08EDACF" modified="2016-01-20" version="1">MADDAGFRARQPAAVDSAFAVLEAVAGHGPGITSKQLVDALPMSKATVYRIVKHLVEQEYLVRTPDLAGFMLGRRVLDLARGPVLPQTVESQSHLGAPERHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFL6</accession>
    <name>A0A0Q8VFL6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13215</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895771.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53309">
        <property type="protein sequence ID" value="KRC53309"/>
        <property type="gene ID" value="ASE19_13215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1972129at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="169" mass="16748" checksum="C05CDB559DB62575" modified="2016-01-20" version="1">MTVFLVLGLVGLGVLLLSLVAGDVLDGPFHALEADWISTAALGGFVSAFGFGGAIADGTGAPLPVSLAVGAGSGVVVGWFALWLTRLVKDGPSDGTVSIGDSVGQVAKVITAIPAEGYGVVRVVVGGHPLQLNASAHLPIEAGAQVNVTGVLSPTAVSVTEVWQSPSPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGD1</accession>
    <name>A0A0Q8VGD1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ribonuclease VapC</fullName>
            <shortName evidence="5">RNase VapC</shortName>
            <ecNumber evidence="5">3.1.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Toxin VapC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">vapC</name>
        <name evidence="6" type="ORF">ASE19_14570</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Toxic component of a toxin-antitoxin (TA) system. An RNase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PINc/VapC protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896951.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53552">
        <property type="protein sequence ID" value="KRC53552"/>
        <property type="gene ID" value="ASE19_14570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1968541at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090729">
        <property type="term" value="F:toxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00265">
        <property type="entry name" value="VapC_Nob1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022907">
        <property type="entry name" value="VapC_family"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0800">Toxin</keyword>
    <keyword evidence="1 5" id="KW-1277">Toxin-antitoxin system</keyword>
    <feature type="binding site" evidence="5">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="142" mass="15736" checksum="8ABB133281A582E6" modified="2016-01-20" version="1">MSDWLIDKSALVRLAHAIDAGDWLDRCRRGLVRIAIPTLLETGYSARSAEDWESLIGGPPISWFPIEHLTPSMERRAVEVQGILAARGQHRAPSIPDLLLAAVAERSGLVVLHLDKDFELIAEVTGQPTERLQVAPQSRTQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGN1</accession>
    <name>A0A0Q8VGN1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01905</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892631.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56613">
        <property type="protein sequence ID" value="KRC56613"/>
        <property type="gene ID" value="ASE19_01905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="6"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="146" mass="15329" checksum="9303065D89797617" modified="2016-01-20" version="1">MSPIKQFDHVGITVSDLDSATAFFVALGLEVEGRTFVEGEFLDVVSGIPDSRVEVVMMRPPGGGTGVELAAYVRPPHTTGSPAPMANELGLRNVCFEVTGLRSRVDALTADGYDLVGGVGEHEGAWLMAYVRGPDGIVVALAEQIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGY1</accession>
    <name>A0A0Q8VGY1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Amino acid permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_02520</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892736.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56718">
        <property type="protein sequence ID" value="KRC56718"/>
        <property type="gene ID" value="ASE19_02520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="527053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="23"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="57"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="96"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="140"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="170"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="210"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="250"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="304"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="350"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="377"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="415"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="439"/>
            <end position="458"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="485" mass="51234" checksum="C2EB7139E1B94999" modified="2016-01-20" version="1">MTTEYVGTGGQPAQQDQPELKRVLGPGLLLLFIVGDILGAGVYAVTGRLAGQVGGVAWLPFLVAFAIATLTAFSYLELVTKYPQAAGAALYAHKAFGIHFVTFLVAFTVVCSGITSASTSSGLLASNLLIGFGNDAPSKGLVLAVALTFMLVLAAINLRGVGESVKFNVVLTIVEMTALAIVIGIGFYVIGKGDGDLDRITVFESPDDKGLFMAVTVATAIAFFSMVGFEDSVNMVEETKDPQRIFPRMMLTGLGIAVIIYMLVAVSVVAVIPADRIGAPTNAEAGILIDVVKIGAPDLPIDDFFPFMTVFAVANTALINMLMASRLIYGMARQNVLPPVLGKVLPGRRSPYVAIAFTTLLAFALITYVRLGSESTIVASLSGTTALLLLAVFTIVNVACLVLRREPSKGFRAPTVVPVLGAILCAYLLGPWARLEADMIQYKIAAGLLGLGVVLWLLTRLLHKPEGGHFADIEHMDVDPTDDPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH00</accession>
    <name>A0A0Q8VH00_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">Pyruvate dehydrogenase E1 component</fullName>
            <ecNumber evidence="2 8">1.2.4.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">aceE</name>
        <name evidence="12" type="ORF">ASE19_14675</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 8">
            <text>(R)-N(6)-lipoyl-L-lysyl-[dihydrolipoyllysine-residue acetyltransferase] + H(+) + pyruvate = (R)-N(6)-(S(8)-acetyldihydrolipoyl)-L-lysyl-[dihydrolipoyllysine-residue acetyltransferase] + CO2</text>
            <dbReference type="Rhea" id="RHEA:19189"/>
            <dbReference type="Rhea" id="RHEA-COMP:10480"/>
            <dbReference type="Rhea" id="RHEA-COMP:10481"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:83099"/>
            <dbReference type="ChEBI" id="CHEBI:83111"/>
            <dbReference type="EC" id="1.2.4.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.4.1" evidence="2 8"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897130.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53697">
        <property type="protein sequence ID" value="KRC53697"/>
        <property type="gene ID" value="ASE19_14675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="49937at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004739">
        <property type="term" value="F:pyruvate dehydrogenase (acetyl-transferring) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02017">
        <property type="entry name" value="TPP_E1_EcPDC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035807">
        <property type="entry name" value="PDC_E1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004660">
        <property type="entry name" value="PDH_E1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041621">
        <property type="entry name" value="PDH_E1_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43825:SF3">
        <property type="entry name" value="PTHR43825:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17831">
        <property type="entry name" value="PDH_E1_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00456">
        <property type="entry name" value="Transketolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000156">
        <property type="entry name" value="Pyruvate_dh_E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00759">
        <property type="entry name" value="aceE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8 12" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="TRANSKETOLASE_1" evidence="10">
        <location>
            <begin position="78"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="domain" description="PDH_E1_M" evidence="11">
        <location>
            <begin position="480"/>
            <end position="696"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="259"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="261"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00033635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR000156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000156-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC53697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="888" mass="97929" checksum="F35EA6E4F677D140" modified="2016-01-20" version="1">MPDIDPDETQEWRDALAAVLEFEGEERTKFLLDQVLEEAQRLGSRVPHVATTPYVNTVAPADEPAHPGDRAIEHRIRSAIRWNALAMVLRANKDSTELGGHLASFQSAATLYDVGFQHFWHAASEEPGKEHGGDLVYVQGHLSPGIYARAFLEGRLTEAQLDNFRQETGGKGLSSYPHPWLMPDFWQFPTVSMGLGPLMAIYQARFLKYLHARGLANTAGRKVWAFLGDGETDEPESLGAISMAAREKLDNLVFVVNCNLQRLDGPVRGNGKIIQELEGVFRGAGWNVIKLIWGSGWDQLLAQDTSGALKRRMMDAVDGEYQTFKSKDGAYVREHFFGTDPELKALVADWSDDEIWRLTRGGHDPQKVYAAYAAAHAHTGTPTVVLAKTVKGYGLGAAGEAMNISHQAKKVAEPALRAFRDRFSIPIGDEQLLDLPYLSFAEGSEEHTYLHARRKELGGYLPVRRQKSTALAVPGVEAFGQTAGSNGRSISTTMAFVQILTKLLRDKEIGQRVVPIVPDEARTFGMEGLFRQVGIFSQSGQLYTPEDADQLMFYKEDASGQILQEGINEAGAMSSWIAAATSYSTNDTPMIPFYIYYSMFGFQRIGDLAWAAGDMRARGFMLGGTAGRTTLNGEGLQHEDGHSHLHAAMIPNCVAYDPTYAYELAVIVADGLRRMYVEQEDVFYYLTLMNENYEHPPMPEGVTEGILKGLYLLKAGKGRARAAVNLLGSGTILNEVLAAAELLATDFKVKADVWSAPSFTELRRDGLATERWNMLHPLEEQRTSYVAQSLGARTGAAVPVVAATDYMKSYADQIRPFVPGRYTVLGTDGFGRSDYRRNLRRHFEVDRHHIVVAALSSLVAEGTVTSDVVAQAIEKYGIDPDRADPAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH06</accession>
    <name>A0A0Q8VH06_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Anthranilate phosphoribosyltransferase</fullName>
            <ecNumber evidence="3">2.4.2.18</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">trpD</name>
        <name evidence="6" type="ORF">ASE19_02750</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the transfer of the phosphoribosyl group of 5-phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>diphosphate + N-(5-phospho-beta-D-ribosyl)anthranilate = 5-phospho-alpha-D-ribose 1-diphosphate + anthranilate</text>
            <dbReference type="Rhea" id="RHEA:11768"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:18277"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="3">Binds 2 magnesium ions per monomer.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the anthranilate phosphoribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.18" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892776.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56757">
        <property type="protein sequence ID" value="KRC56757"/>
        <property type="gene ID" value="ASE19_02750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1238435at2"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00041"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004048">
        <property type="term" value="F:anthranilate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00211">
        <property type="entry name" value="TrpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005940">
        <property type="entry name" value="Anthranilate_Pribosyl_Tfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000312">
        <property type="entry name" value="Glycosyl_Trfase_fam3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017459">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036320">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035902">
        <property type="entry name" value="Nuc_phospho_transferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43285">
        <property type="entry name" value="PTHR43285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02885">
        <property type="entry name" value="Glycos_trans_3N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00591">
        <property type="entry name" value="Glycos_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47648">
        <property type="entry name" value="SSF47648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52418">
        <property type="entry name" value="SSF52418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01245">
        <property type="entry name" value="trpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="1 3 6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="Glycos_trans_3N" evidence="5">
        <location>
            <begin position="6"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_3" evidence="4">
        <location>
            <begin position="74"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoribosylpyrophosphate binding" evidence="3">
        <location>
            <begin position="83"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoribosylpyrophosphate binding" evidence="3">
        <location>
            <begin position="90"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoribosylpyrophosphate binding" evidence="3">
        <location>
            <begin position="108"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>anthranilate</name>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>anthranilate</name>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="224"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="340" mass="34452" checksum="9BA6A02F9FBA58DD" modified="2016-01-20" version="1">MSWPEVLGALVAGEDLTPAQASWAMGEILAGEATPAQIAGFVVALRAKGESIEELTGLVDAMYDVMTPISVPGRLLDVVGTGGDRSFSVNISTMSAIVAAGAGARVVKHGNRSASSQAGTADVLEALGVRLDLPPARVAELATEAGITFCFAAAFHPAMRHAAVPRRELGIGTAFNALGPLANPTKPAAQAIGCADPRLAPVMAGVFAARGVDAWVFRGDDGLDELTTTTTSSLWVVHEGEVTTAKVDPAALGLAPATAEDLRGGDATHNAGVVRRLLEGERGPVRDAVLLNAGAALAVYDAPGQPVDEALAAGLARATEAIDSGAAQATLDRWIAAASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHL6</accession>
    <name>A0A0Q8VHL6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HisKA_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04135</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56997">
        <property type="protein sequence ID" value="KRC56997"/>
        <property type="gene ID" value="ASE19_04135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360046" description="HisKA_3 domain-containing protein" evidence="2">
        <location>
            <begin position="20"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="169"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="domain" description="HisKA_3" evidence="3">
        <location>
            <begin position="220"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="424" mass="45641" checksum="5A88243697166DB0" modified="2016-01-20" version="1">MVCVLLSTVVVSLATLAVAERMSEKIAISEARTRGEAFTNGVAAPLVNTEVRAGDPAATAIFSDVMRNRLDAGSIVHMKLWGTDGTVLWSDETALIGRTFDLEEPVRDLAGGSFAHAELSSLDQPENELEPESGKLLEVYVGTRDADGDPIVFETYWSAARIHRDERRVFWTLAPLSLGSMALLLALMFPIAMNLARNASRHVRERNRLLQHALGAADMERGRIAELLHDGVIQDLSGLGYALPSAASRLESRTGLDEAREIIDRATELVRRDLIALRTLLVDIYPPSLAAGELATAIGELAVTSERSGLVVSVEVRTDRPLGRATNQLAYRIVREGLLNIAKHTAATRARVSVRASGADVEIVVRDNGPEPVSVTVADRHSGHLGLRLLADAVADRGGELTIGPDEDGGTVLTATFRVLETGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHN1</accession>
    <name>A0A0Q8VHN1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03470</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892893.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56876">
        <property type="protein sequence ID" value="KRC56876"/>
        <property type="gene ID" value="ASE19_03470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004673">
        <property type="term" value="F:protein histidine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.280">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038424">
        <property type="entry name" value="H_kinase_PdtaS_GAF_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022066">
        <property type="entry name" value="PdtaS_GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011495">
        <property type="entry name" value="Sig_transdc_His_kin_sub2_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011102">
        <property type="entry name" value="Sig_transdc_His_kinase_HWE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12282">
        <property type="entry name" value="H_kinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07568">
        <property type="entry name" value="HisKA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00911">
        <property type="entry name" value="HWE_HK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Histidine kinase" evidence="1">
        <location>
            <begin position="299"/>
            <end position="492"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="492" mass="52922" checksum="C2BC1FCE1DCF677F" modified="2016-01-20" version="1">MPSLSAIARRHTDLSPGDIAWLQLLQADWQVIADLSFADLVLWLPDREGSGFWAGDQMRPTTGPTAYVDDVTGTFLPTGRRALVDSAYEHGRIAREGDPEWRDDVPVRVEAIPVRHEGRVIAVVSRNTNLLGVRTPSLLEINYLQAASDLANMIATGLFPSSGQRSDHADSPRVGDGFLRVDREGRVVYASPNGLSVFRKLGLTGDLTGHRLTDLTRELVPPKKRPDEETLSAVLGGRAHRDTELGASSGPGDGVSLIVRSIPLRPQGEHIGGIILLRDVTDLRRRDRELVTKDATIREIHHRVKNNLQTVAALLRLQARRIGSPEAASALEEAVRRVGSIAVVHDILSQAVEETVAFDDIADRLLRLVTDVGSTTAQVAVRREGSFGVLTSEVATPLAMVVMELMQNAAEHGYDGGATGEIVLQAARHGAILEVAVEDDGKGLPEGFDIEGATSLGLSIVRTLVESELGGHLTLGHAPDGGTRAGFTIPVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHW6</accession>
    <name>A0A0Q8VHW6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_03640</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56907">
        <property type="protein sequence ID" value="KRC56907"/>
        <property type="gene ID" value="ASE19_03640"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="40"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="78"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="108"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="133"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="165"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="195"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="228"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="258"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="295"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="336"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="367"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="391"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="435"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="464"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="42"/>
            <end position="492"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="495" mass="50323" checksum="1E97E76D7DC1E130" modified="2016-01-20" version="1">MVDGVDRESVNTVDWLTVTTTSPAASPSAPAAGGWIGSPLLTVVVLCFGGLTASLTQTMVIPIQGELGMLLHTSEANASWVVTATLVAGAVAMPISGRLGDLFGKQRVLMISAALLALGSLVCALSDTLAPMLAGRMLQGFAMGFIPVGIALMREVVPPQYAATGMAAMSATLGVGGAIGLPLSAWIVQDFSWHTLFWVSTGLAAAVAAAVVLLVPHVRDAVPGRFDAVGAVGLAVGLVALLVAVSKGNEWGWAHGRTIGLLVAAVVVLLAWGSYELRVADPLCDLRVSARRPVLLTNVAAIAIGFGMMAQAIVVPRLLQSPGATGYGLGQTMLETGLWLAPGGLVMMAFSPVSGRLIRLIGARRTLMIGATVLGLGYVFAIFLTDAPWQLMVSNCITSAGIGIGYAAMPTLILEAVPLAEAGSGVGINGLMRSIGTSVSAAVMAAILTSSTISLGGYDIPDEGAFRICFVVGAAAAFLGVVLAALVPARRGASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI47</accession>
    <name>A0A0Q8VI47_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06310</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894458.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55049">
        <property type="protein sequence ID" value="KRC55049"/>
        <property type="gene ID" value="ASE19_06310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="900513at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008703">
        <property type="term" value="F:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002734">
        <property type="entry name" value="RibDG_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01872">
        <property type="entry name" value="RibD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="SSF53597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RibD_C" evidence="1">
        <location>
            <begin position="5"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="229" mass="24504" checksum="6F6E84828BBF7EF7" modified="2016-01-20" version="1">MGERPYVLLSCCMSLDGFLDSAGEERLLLSNDDDFDRVDEVRAGCDAILVGAATVRKDDPRLLVRSAERRRSRVAAGLPDGPVKVTLSSRGDLSPEARFFALGDGEKLVYCPDATVGELESRVGSVAKVVGLGAEVRMADLVADLGSRGVRRLMVEGGGTVHTQFLTAGVADELHLVVAPFFVGDSRARRFVGDGGFPWHAGRRATLLESRSIGDVALLRYALSDRCPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIK0</accession>
    <name>A0A0Q8VIK0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_14755</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897129.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53698">
        <property type="protein sequence ID" value="KRC53698"/>
        <property type="gene ID" value="ASE19_14755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="498436at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010290">
        <property type="entry name" value="TM_effector"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05977">
        <property type="entry name" value="MFS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="62"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="92"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="119"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="187"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="244"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="285"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="317"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="340"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="372"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="404"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="1"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="247"/>
            <end position="435"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="435" mass="45319" checksum="1FD700C040E45952" modified="2016-01-20" version="1">MTDQLAPLPPTRPRRVPRAFTPFRHASYRWLGAALVLTSFGGGVWVVALVWEVIRIGGSASALSVVSTAGAVGVLLPALLGGVVADRVPQKLILLATTTVELLGVALVAVLSFADVAQLWHLAAVAFTAGTAMAFYYPAYSAWLPALVPEEDLLAVNGFEGMVRPTIGQALGPAVAGAVVGAASSSAAITVAAVAYLAGLLVLAMVPLTAVRREIATPDPGADAHPVRAVLADMREGFAYMVRTPWLLATLLFASIMVLVMMGPLDVLVPFLIKDRLGGGPGDHAIVMACFGIGGAIGSLVTGSLPMPRRYLTWMNLMWGVGCLPFLVIGYATAVWQVAAAAFVIGVLFSAPMVIWGTLLQRRVPPELLGRVASLDFFVSVSLMPISMAIAGPVAELIGLRATFAIAAIVPGVTAAVAIVAARLPEDERAHPLRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJS0</accession>
    <name>A0A0Q8VJS0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_08445</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895514.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54082">
        <property type="protein sequence ID" value="KRC54082"/>
        <property type="gene ID" value="ASE19_08445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="7548at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023836">
        <property type="entry name" value="EccCa-like_Actinobacteria"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023837">
        <property type="entry name" value="EccCb-like_Actinobacteria"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002543">
        <property type="entry name" value="FtsK_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01580">
        <property type="entry name" value="FtsK_SpoIIIE"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03924">
        <property type="entry name" value="T7SS_EccC_a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03925">
        <property type="entry name" value="T7SS_EccC_b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50901">
        <property type="entry name" value="FTSK"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="38"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="70"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="FtsK" evidence="6">
        <location>
            <begin position="467"/>
            <end position="671"/>
        </location>
    </feature>
    <feature type="domain" description="FtsK" evidence="6">
        <location>
            <begin position="830"/>
            <end position="1020"/>
        </location>
    </feature>
    <feature type="domain" description="FtsK" evidence="6">
        <location>
            <begin position="1117"/>
            <end position="1301"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="490"/>
            <end position="497"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="848"/>
            <end position="855"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="1134"/>
            <end position="1141"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1336" mass="144080" checksum="1E58C350CBB36F6C" modified="2016-01-20" version="1">MAAPGSLTHRGGRGDRPEMPSGKVQIQPPPQIQPNEGAAGVAMNAIPMLGSLGSIVLVASLGGSGSNGPLRLIAAGMFLFATLGFIVVQIDRQRKQRQEQVSGSRTEYLRYLSSVRGVAREAADQQRRALTWTHPDPSALPALAEDRSRIWERATSDPAFLQVRYGVCAQPLALELVPPEGAPIDDVDPASASALHRLLVVHRLQPDLPASIDLRAFDRIEVCGGEDEARAMARALLCSATTFQSPENLQVAVLASDATLAHWDWVKWLPHAHSQHQTDAVGPARMVTTSLTDLAQMLPPDLSERPRFGADERPAIPHIVLITDGAELPPGNHVIPPDGLHGVTVIDLPARWGELDSATALRLELDDRTAEGPVPLVAVRLRTEPVRAKGDQCSIATAEALARRLTPLFTPAAGAAVGDEATDITAPTDFMDLIGMGDVFTFEPDSAWRSRPARDRLRVPIGVGDNAGPIHLDIKESAQQGMGPHGLVIGATGSGKSEFLRTLVLGLAMTHSPEQLNMVLVDFKGGATFAGMSEMPHVSAVITNLSQELTLVDRMQDALSGEMVRRQELLREAGNFASIRDYEKARTSGDPAGAQLAPLPSLFIVVDEFSEMLTAKPEFIDLFVAIGRLGRSLGLHLLLASQRLEEGRLRGLESHLSYRIGLRTFSAQESRAVLGVPDAYELPAVPGLGYLKPDPTQLTRFKAAYVSGPPETGRRRVDRDSGGKVRGILPFTISEVQTFDEPVAEEQETAKPANDESASLLDIAVQRMEGHGLPAHQVWLPPLDTPDTLDQLMPDLAVHPELGLVSMQWRQAGSLTVPIGTVDRPREQRRDTLTVSLSGAAGHVAIVGGPRSGKSTLLRSIVTSLSLTTTPLESQFYVLDFGGGTFAPMTALPHVAGVGSRSEPEVVRRILAEVKGIVDRREAYFRQHGIDSIETYRSRRGQGRADDGYGDVFLVIDGWGTLRADFDDLELEIQQLAGRGLTFGLHVVTSSARWADFRAAMRDLLGTKLELRLGDAIDSEIDRKIAALVPTNRPGRGLVPGKLHFLGGLPRIDGKASAETLGDGVDALISAVAKAWRGPAGPKLRLLPNRISLDEVRALAPAGPGRPLLLAINEKELAPVAFDVDAEPHLLLFGDGKSGKSNFLRTYCQEIMRTRTSAEAQIVVVDYRRSMLGEVPEEYLLNYLTSATQAQPALSDLATYLQNRLPGPDVTPDQLRNRSWWTGAEVFVVVDDYDLVATQQSSPIALLQPLLAQARDVGLHVVIARRSGGASRALYEPVIQSLRDLAMPGILLAGNRDEGVLIGNLRPGPAAPGRGRLVSRDRGAEVIQLAWTDPSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJZ6</accession>
    <name>A0A0Q8VJZ6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AAA_31 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13995</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53447">
        <property type="protein sequence ID" value="KRC53447"/>
        <property type="gene ID" value="ASE19_13995"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_31" evidence="1">
        <location>
            <begin position="47"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="311" mass="33016" checksum="92699F00FF81DE1C" modified="2016-01-20" version="1">MLTAAQLAERNAGFDDDLTPLARAAQATVMVRAGIPQEQLGRPSETRVMVVANQKGGVGKTTSTVNLAAALTQLGQRVLVIDLDPQGNASTALNIEHRQGTPSTYELLVDGLAIVDIAQPCPDANGLWVVPATIDLAGAEIELVSVVAREQRLKKAIDAHPRIGTAAEIGDERFDYVFIDCPPSLGLLTLNALVAGAEMLIPIQAEYYALEGLGQLLATVDMVRAHLNPELAVSTIVLTMYDARTRLAAGVAQEVREHFGDQVLKTAIPRSVRVSEAPSYGQTVMTYDPGSPGALSYLEAAREIVTRGALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK27</accession>
    <name>A0A0Q8VK27_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Isoprenyl transferase</fullName>
            <ecNumber evidence="2">2.5.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_23535</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="2">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57772">
        <property type="protein sequence ID" value="KRC57772"/>
        <property type="gene ID" value="ASE19_23535"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004659">
        <property type="term" value="F:prenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00475">
        <property type="entry name" value="Cis_IPPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01139">
        <property type="entry name" value="ISPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001441">
        <property type="entry name" value="UPP_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036424">
        <property type="entry name" value="UPP_synth-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10291">
        <property type="entry name" value="PTHR10291"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01255">
        <property type="entry name" value="Prenyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64005">
        <property type="entry name" value="SSF64005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00055">
        <property type="entry name" value="uppS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2 4" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="37"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="81"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="210"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="204"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="262" mass="29630" checksum="430FB883B60F07B7" modified="2016-01-20" version="1">MPPRAAPLPPTPHPSGVRPPALPPELVPNHVAIVMDGNGRWAKERGLPRTRGHEEGESSLFDVVEGAIEIGVKAVSAYAFSTENWSRSPDEVKFLMGFNRDVVRRRREEMHERGIRVRWAGRAPKLWKSVIDELRTTEELTKHNDVLTLTMCVNYGGRSELGDAARGLARDVAAGRVNPERVDERTLGKYLYVPELADADLIWRTSGEQRLSNFMLYQAAYAEFVFSDVLWPDVDRRHLWAAIDEYARRDRRYGGAMPNPGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKK9</accession>
    <name>A0A0Q8VKK9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Delta fatty acid desaturase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11530</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53639">
        <property type="protein sequence ID" value="KRC53639"/>
        <property type="gene ID" value="ASE19_11530"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005804">
        <property type="entry name" value="FA_desaturase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012171">
        <property type="entry name" value="Fatty_acid_desaturase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19353">
        <property type="entry name" value="PTHR19353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00487">
        <property type="entry name" value="FA_desaturase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015921">
        <property type="entry name" value="FA_sphinglp_des"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="18"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="185"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="domain" description="FA_desaturase" evidence="2">
        <location>
            <begin position="42"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="35223" checksum="9325F8F2F5FF4292" modified="2016-01-20" version="1">MVREVRERGLLRRRPGPYAAQAVVLVTALAAVVTTMLLRPDAWWLVALAPAMAVITTQTSFLGHDIGHRQVARSAVRSRALGLLAGNLLSGLSYSWWVGKHNAHHAHPNDLARDPDVAVGALVWDADQARSRRGAAAWWTRHQAALFVPLLTLEAVNLHVSSVRALLRPGARWRLAELTLLATHLLGYALLLVTTLTWGQALVFLALHKGLQGLYLGASFAPGHKGMPVLVADQARDPLLRQVLTSRDVRGGWWTDAVLGGLNYQIEHHLFPSMPRANLRHAQPVVRDFCARNHIPYAECSAYASYSAGLRHLRRVGSAST</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKX1</accession>
    <name>A0A0Q8VKX1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Energy-dependent translational throttle protein EttA</fullName>
            <ecNumber evidence="7">3.6.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Translational regulatory factor EttA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ettA</name>
        <name evidence="10" type="ORF">ASE19_05220</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">A translation factor that gates the progression of the 70S ribosomal initiation complex (IC, containing tRNA(fMet) in the P-site) into the translation elongation cycle by using a mechanism sensitive to the ATP/ADP ratio. Binds to the 70S ribosome E-site where it modulates the state of the translating ribosome during subunit translocation. ATP hydrolysis probably frees it from the ribosome, which can enter the elongation phase.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer. Probably contacts ribosomal proteins L1, L5, L33 and S7, the 16S and 23S rRNA and the P-site containing tRNA(fMet).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="7">Associates with ribosomes and polysomes.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">The P-site tRNA interaction motif (PtIM domain) probably interacts with the P-site tRNA(fMet) as well as the 23S rRNA.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">The arm domain is inserted in the first ABC transporter domain. Probably contacts ribosomal protein L1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the ABC transporter superfamily. ABCF family. Translational throttle EttA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.-" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894217.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54864">
        <property type="protein sequence ID" value="KRC54864"/>
        <property type="gene ID" value="ASE19_05220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1112046at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045900">
        <property type="term" value="P:negative regulation of translational elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00847">
        <property type="entry name" value="EttA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032781">
        <property type="entry name" value="ABC_tran_Xtn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022374">
        <property type="entry name" value="EttA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43858">
        <property type="entry name" value="PTHR43858"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12848">
        <property type="entry name" value="ABC_tran_Xtn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03719">
        <property type="entry name" value="ABC_ABC_ChvD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="6 7" id="KW-0810">Translation regulation</keyword>
    <keyword evidence="2 7" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="6"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="324"/>
            <end position="540"/>
        </location>
    </feature>
    <feature type="region of interest" description="Arm" evidence="7">
        <location>
            <begin position="94"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <begin position="356"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC54864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="560" mass="62032" checksum="3FA5EE2129B71EEE" modified="2016-01-20" version="1">MAEYVLSLRNVRKAHGDKVVLDNVTLSFLHGAKIGVVGPNGMGKSSLLKLMAGLDVPNNGDIVRDPDATVGMLQQEPPLTEGKTVLENVEEAVADIKAKMKRLEDAYMEMGDPDADQDALMAETGELQTELDNINAWDLDSRLEQAMDALRCPPSDALVDNLSGGERRRVALCKLLLQQPDLLLLDEPTNHLDAESVQWLEGHLKSYPGAVLAVTHDRYFLDNVAEWIAEVDRGSIHGYEGNYSTYLETKKERLKVEGAKDAKRAKMLEKELEWVRSNAKARQTKSKSRLARYEEMAAEADKARKIDAADINIPPGPRLGDIVLEAEHLTKGFEGRVLWDDISFTLPRAGIVGVVGPNGVGKTTLFRMITGGEQPDSGKLTVGQTVKISYVDQSRGGIDPNKNVWEVVSDGLDFIKVANFEMNSRAYVASFGFKGPDQQKKAGVLSGGERNRLNLALTLKQGGNMLLLDEPTNDLDVETLSSLEDALLDFPGCAVVTSHDRWFLDRIATHILAWEGTEDSEGEWFWFEGNFASYEENKIERLGLEAARPHRVTHRRLTRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLG3</accession>
    <name>A0A0Q8VLG3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06340</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894462.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55053">
        <property type="protein sequence ID" value="KRC55053"/>
        <property type="gene ID" value="ASE19_06340"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="128" mass="13320" checksum="6E6F59E681DE6610" modified="2016-01-20" version="1">MVMRGVGALAAVVTAAVHLYLWFDGVRDQGTVGQLFLVNVVAGAVIAVLLVAWRSWVPLLLLAGLGATTLAAFVISTTAGLYGIHTTWDSWYAWVAAVSEAGAVLVAAAAASAEGWLTSLRSRVDAKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLN5</accession>
    <name>A0A0Q8VLN5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07740</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53959">
        <property type="protein sequence ID" value="KRC53959"/>
        <property type="gene ID" value="ASE19_07740"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="111" mass="11436" checksum="0D303ED46BD11ACE" modified="2016-01-20" version="1">MRSVTSSLLLAAPVVLAAEERGDRSGDAFGVAVVLGGVLAGLVIVALFVLWLAVLVQALRIPDSTWEAADQSKLVYVLLMVLLGLLGTVLYALVARPALRRAGASPAAAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM34</accession>
    <name>A0A0Q8VM34_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">DNA polymerase I</fullName>
            <ecNumber evidence="2 11">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">polA</name>
        <name evidence="15" type="ORF">ASE19_02015</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 11">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 11">Belongs to the DNA polymerase type-A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2 11"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56633">
        <property type="protein sequence ID" value="KRC56633"/>
        <property type="gene ID" value="ASE19_02015"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09898">
        <property type="entry name" value="H3TH_53EXO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002562">
        <property type="entry name" value="3'-5'_exonuclease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020046">
        <property type="entry name" value="5-3_exonucl_a-hlix_arch_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002421">
        <property type="entry name" value="5-3_exonuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036279">
        <property type="entry name" value="5-3_exonuclease_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001098">
        <property type="entry name" value="DNA-dir_DNA_pol_A_palm_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020045">
        <property type="entry name" value="DNA_polI_H3TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018320">
        <property type="entry name" value="DNA_polymerase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002298">
        <property type="entry name" value="DNA_polymerase_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008918">
        <property type="entry name" value="HhH2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10133">
        <property type="entry name" value="PTHR10133"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01367">
        <property type="entry name" value="5_3_exonuc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02739">
        <property type="entry name" value="5_3_exonuc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00476">
        <property type="entry name" value="DNA_pol_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01612">
        <property type="entry name" value="DNA_pol_A_exo1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00868">
        <property type="entry name" value="DNAPOLI"/>
    </dbReference>
    <dbReference type="SMART" id="SM00474">
        <property type="entry name" value="35EXOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00475">
        <property type="entry name" value="53EXOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00279">
        <property type="entry name" value="HhH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00482">
        <property type="entry name" value="POLAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47807">
        <property type="entry name" value="SSF47807"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00593">
        <property type="entry name" value="pola"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0227">DNA damage</keyword>
    <keyword evidence="11" id="KW-0234">DNA repair</keyword>
    <keyword evidence="11" id="KW-0235">DNA replication</keyword>
    <keyword evidence="9 11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8 11" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5 11" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="53EXOc" evidence="13">
        <location>
            <begin position="9"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="3'-5' exonuclease" evidence="12">
        <location>
            <begin position="317"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="domain" description="POLAc" evidence="14">
        <location>
            <begin position="657"/>
            <end position="864"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00020311"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00024632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="SMART" id="SM00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC56633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="901" mass="98079" checksum="05033FC624BBDF61" modified="2016-01-20" version="1">MPQPVSETTRPRLLLLDGHSLAYRAFFALPVENFSTATGQNTNAVYGFTSMLVNVLRDEQPTHVAVAFDVSRQTFRTEEYAEYKAKRNKTPGEFSSQLPLIERMLTSFSIPFLKAPGYEADDIIATVVTQALADEESGLEVLILTGDRDSFQLVTERSTVLYPMRGVSDLARLTPAAVEEKYGVPPHRYPELAAIVGEQSDNLPGVPGVGAGFAAKWINTYDGLDNVITHADKITGKKGESLREHLGDVIRNRRLNALVRDLPLGVTIDDFARSDWDRAAALELLDELEIRGELRTRIMDVVAPGEDLAVEAGVELDGTSLAPDAVAGWLAGIGSETVGVSVRGTWGSGTGRVSGLALALADGRAAYVDVDAMTQADDAALADWLADTSRPKVLHNAKGPLLALAAHGWQLAGVAEDSALAAYLVAPDQRSYDLADLTLRYLHRELSQAEDDDQGMLFDEDEATAGIARSAMVQARAALDLSAELADEVERAGGRSLLTDVEMPLVGILAGMEQTGIAVDTEHLEGLETHFGEEVRKEAEEAYAVIGKEINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQGLFKQTEHPFLLHLLRHREVIRLRQTIEGLLKTVQPDGRIHTTFHQTIAATGRLSSTDPNLQNIPVRTEEGRRIRESFVVGPGYASLMTADYSQIEMRIMAHLSEDALLIEAFRSGRDFHAETASRVFDVASDAVTPEMRAKIKAMNYGLAYGLSAFGLSQQLGIEPGEAAGLMTEYFETFGGIRDYLTGVVDEARRTGFTETIMGRRRYLPDLTSDNRMRREAAERMALNAPIQGSAADLIKVAMLRTRAALDEAGLASRMLLQVHDELVFEVAEGETEALDALVREQMAGAADLTVPLDVSVGTGRSWHEAAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQM7</accession>
    <name>A0A0Q8VQM7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Cytochrome aa3 subunit 3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_01515</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the cytochrome c oxidase subunit 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896613.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59726">
        <property type="protein sequence ID" value="KRC59726"/>
        <property type="gene ID" value="ASE19_01515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1502742at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004129">
        <property type="term" value="F:cytochrome-c oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019646">
        <property type="term" value="P:aerobic electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024791">
        <property type="entry name" value="Cyt_c/ubiquinol_Oxase_su3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000298">
        <property type="entry name" value="Cyt_c_oxidase-like_su3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035973">
        <property type="entry name" value="Cyt_c_oxidase_su3-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013833">
        <property type="entry name" value="Cyt_c_oxidase_su3_a-hlx"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11403">
        <property type="entry name" value="PTHR11403"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00510">
        <property type="entry name" value="COX3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81452">
        <property type="entry name" value="SSF81452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50253">
        <property type="entry name" value="COX3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="29"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="71"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="104"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="143"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="179"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="COX3" evidence="10">
        <location>
            <begin position="29"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00031400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC59726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="207" mass="23271" checksum="1458576D6F7DB2C3" modified="2016-01-20" version="1">MTDIDLEARPATTSPPSTRRTRRIPGEEGTWIFIFGDMCVFAVFFCVFLHARISDPVGFARDQAELNQNFGAINTVLLLVSSLFIVLTMRVIHSSNAVMRAKAPVFIAAAWLCGAGFLVIKGFEYAEKVHHGITPQTSDFFMYYFVLTGLHAFHLVLGLALLVVLFVMSRKPELSKGQFAFFEGGACFWHMVDLLWLVLFPLIFLVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQN6</accession>
    <name>A0A0Q8VQN6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carbon monoxide dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894513.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55111">
        <property type="protein sequence ID" value="KRC55111"/>
        <property type="gene ID" value="ASE19_06675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1843415at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="1">
        <location>
            <begin position="2"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="17104" checksum="042D69BE90D6988C" modified="2016-01-20" version="1">MARISLSVDGQQVTDDVEPRTLLVQYLREQLGKTGTVVGCDTSNCGACTVHLNGRSVKSCNVLAVQVDGAEVTTIEGLAGEDGSLHPVQEAFRECHGLQCGYCTPGMVMQAVDLLNENPSPSEEAIRLGLEGNLCRCTGYHNIVRAVQHAAGTTTGTTEGASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQP7</accession>
    <name>A0A0Q8VQP7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Pyrophosphate--fructose 6-phosphate 1-phosphotransferase</fullName>
            <ecNumber evidence="10">2.7.1.90</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">6-phosphofructokinase, pyrophosphate dependent</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">PPi-dependent phosphofructokinase</fullName>
            <shortName evidence="10">PPi-PFK</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Pyrophosphate-dependent 6-phosphofructose-1-kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">pfp</name>
        <name evidence="12" type="ORF">ASE19_02535</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>beta-D-fructose 6-phosphate + diphosphate = beta-D-fructose 1,6-bisphosphate + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13613"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="EC" id="2.7.1.90"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="10">Non-allosteric.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homodimer or homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.90" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892739.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56721">
        <property type="protein sequence ID" value="KRC56721"/>
        <property type="gene ID" value="ASE19_02535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1421302at2"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00182"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003872">
        <property type="term" value="F:6-phosphofructokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047334">
        <property type="term" value="F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006002">
        <property type="term" value="P:fructose 6-phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.460">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01976">
        <property type="entry name" value="Phosphofructokinase_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022953">
        <property type="entry name" value="ATP_PFK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012003">
        <property type="entry name" value="ATP_PFK_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015912">
        <property type="entry name" value="Phosphofructokinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000023">
        <property type="entry name" value="Phosphofructokinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012829">
        <property type="entry name" value="Phosphofructokinase_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035966">
        <property type="entry name" value="PKF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00365">
        <property type="entry name" value="PFK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000532">
        <property type="entry name" value="ATP_PFK_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00476">
        <property type="entry name" value="PHFRCTKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53784">
        <property type="entry name" value="SSF53784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02483">
        <property type="entry name" value="PFK_mixed"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00433">
        <property type="entry name" value="PHOSPHOFRUCTOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 10" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="7 10 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="8 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PFK" evidence="11">
        <location>
            <begin position="2"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="125"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="169"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="272"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="10"/>
        </location>
        <ligand>
            <name>diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="266"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalytic activity and substrate specificity; stabilizes the transition state when the phosphoryl donor is PPi; prevents ATP from binding by mimicking the alpha-phosphate group of ATP" evidence="10">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <feature type="site" description="Important for catalytic activity; stabilizes the transition state when the phosphoryl donor is PPi" evidence="10">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC56721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="342" mass="35771" checksum="C15B598AF1C51B24" modified="2016-01-20" version="1">MRVGVLTGGGDCPGLNAVIRAVVRKGVKDHGFEFLGFRDGWRGPLEGLTMPLGIEQCRGILPRGGTILGSSRTNPFAVEGGVERIRENLAAAGVDALVAIGGEDTLGVATKLADLGVAVVGVPKTIDNDLSGTDFTFGFDTAVNIATEAIDRLHTTAESHHRVLVVEVMGRHAGWIALHAGIAGGASAVLIPEAPFDIDAVCAHVETRFRSEYAPIIVVSEGAVPADGTGMTLVSGEKDAFGHVRLGGIGDRLAHEIEQRTGTEARAVVLGHVQRGGTPTAFDRWLATRFGLQAIDAVAEGDFGVMVALRGTDIVRVPLIEGTGELKLVSPKEYAEAQVFFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQQ0</accession>
    <name>A0A0Q8VQQ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01485</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59720">
        <property type="protein sequence ID" value="KRC59720"/>
        <property type="gene ID" value="ASE19_01485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1482228at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="72" mass="8177" checksum="2AA66BCBC33E787B" modified="2016-01-20" version="1">MVRRTPHLSEMDYLRLIELLAHEVVEVAAEQDWLSFGDDGNSDPSPLHRAVDALATELRMVHHDGDSCLEHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQY0</accession>
    <name>A0A0Q8VQY0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MarR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00875</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896888.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59816">
        <property type="protein sequence ID" value="KRC59816"/>
        <property type="gene ID" value="ASE19_00875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1744037at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="134" mass="14724" checksum="C6F956F4B1B0F970" modified="2016-01-20" version="1">MFIGARYVEQRVSDAVLAAGYDDLTPAMGRAAARLSDDGIRVTELAEQARITKQSASVLVDQLERAGYVERVPDPSDARARLVVIAPRGRAVQQVARRTERAIEREWAAHLGPERMAALQDALLALREITDPFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR51</accession>
    <name>A0A0Q8VR51_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03405</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892882.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56864">
        <property type="protein sequence ID" value="KRC56864"/>
        <property type="gene ID" value="ASE19_03405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="10"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="209" mass="22918" checksum="5FC93CBC92D746A1" modified="2016-01-20" version="1">MTGIRGEQKERTRRAILDAALSLSDGSALVALSLRQVAKEVGIVPTAFYRHFPSIEDLGMALVEESLDTLRTLLRELRRTAGDDFRSIIDGSVTVLVTQVRQDQAHFGFIARERFAGPPAVREAIARGIELAERELAIDLAHLPGTDQWSEEDLRVLSTLIVGAMVATAERLLTAGSGSDAERKVADTARAQLRMMLIGAMQWRSRPSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSG8</accession>
    <name>A0A0Q8VSG8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">SLT_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04120</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893011.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56994">
        <property type="protein sequence ID" value="KRC56994"/>
        <property type="gene ID" value="ASE19_04120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="710313at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043426">
        <property type="entry name" value="MltB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031304">
        <property type="entry name" value="SLT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30163">
        <property type="entry name" value="PTHR30163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13406">
        <property type="entry name" value="SLT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360336" description="SLT_2 domain-containing protein" evidence="2">
        <location>
            <begin position="50"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="domain" description="SLT_2" evidence="3">
        <location>
            <begin position="165"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="336"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="407" mass="41453" checksum="F904C4C8FAF12F9B" modified="2016-01-20" version="1">MSRSRRHRRSRASALPAALRRTPSPRVVAALLLPVVAGTAASAVCVASAAPAGELRSGTDRAPAPTVYDAPYALRAIPARQDHDHVVVLLWGAYARAVGAAPVDCHLPLSLLAAIGQVGSGSLSGRSLDATHRAVPAVLGPVLDGRGRAAVADTDHGTLDGNPRWDRAIGPMQLLPGTWTRFARDGDGDGSRDPQDIDDAAATAATYLCAGERDLADSDDLTAALLGSAHPAGYVGLVLALKENLDAELSRQVVTALLVAPPVSFEVPAATRVAPARTAVRHVVHATVALLPRHPEPAGPGAAAAPALPFAVEVDPPAAPEVPSCPAPVEAPVEEPVEAPVDEPVEAPLEEPAGGPVEEPAEPIDDADAPACGEELSPVATDVPTDAPTDVPADLRAELPAVAADAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VU02</accession>
    <name>A0A0Q8VU02_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Endoribonuclease YbeY</fullName>
            <ecNumber evidence="7">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ybeY</name>
        <name evidence="8" type="ORF">ASE19_23430</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the endoribonuclease YbeY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893920.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57714">
        <property type="protein sequence ID" value="KRC57714"/>
        <property type="gene ID" value="ASE19_23430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1830156at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00009">
        <property type="entry name" value="Endoribonucl_YbeY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023091">
        <property type="entry name" value="MetalPrtase_cat_dom_sf_prd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002036">
        <property type="entry name" value="YbeY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020549">
        <property type="entry name" value="YbeY_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46986">
        <property type="entry name" value="PTHR46986"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02130">
        <property type="entry name" value="YbeY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00043">
        <property type="entry name" value="TIGR00043"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01306">
        <property type="entry name" value="UPF0054"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="7" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="6 7" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC57714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="153" mass="16942" checksum="C92881E4AE06D313" modified="2016-01-20" version="1">MSIEIIDESGAGLDVKHFSRLARFVMDQMRVHPLAELCIKAVDEPTIAELNEKWMEKEGPTDVLAFPMDELRPGLVNEEPEEGVLGDLVLCVAVAERQGETAGHGTLAELELLTTHGILHLLGYDHAEPEEHKVMFGLQDQLLAQWRAHLAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUG0</accession>
    <name>A0A0Q8VUG0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Cytochrome bc1 complex Rieske iron-sulfur subunit</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Cytochrome bc1 reductase complex subunit QcrA</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="14">Rieske iron-sulfur protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">ASE19_02775</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <reference evidence="18 19" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Iron-sulfur subunit of the cytochrome bc1 complex, an essential component of the respiratory electron transport chain required for ATP synthesis. The bc1 complex catalyzes the oxidation of menaquinol and the reduction of cytochrome c in the respiratory chain. The bc1 complex operates through a Q-cycle mechanism that couples electron transfer to generation of the proton gradient that drives ATP synthesis.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the Rieske iron-sulfur protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892778.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56759">
        <property type="protein sequence ID" value="KRC56759"/>
        <property type="gene ID" value="ASE19_02775"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045603">
        <property type="entry name" value="QcrA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014349">
        <property type="entry name" value="Rieske_Fe-S_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005805">
        <property type="entry name" value="Rieske_Fe-S_prot_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10134">
        <property type="entry name" value="PTHR10134"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19297">
        <property type="entry name" value="QcrA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00162">
        <property type="entry name" value="RIESKE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="12" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="10" id="KW-0408">Iron</keyword>
    <keyword evidence="11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="16" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="16" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="16" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="47"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="74"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="150"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="Rieske" evidence="17">
        <location>
            <begin position="248"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00015816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00032409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="KRC56759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="366" mass="39837" checksum="28AF95CA20CEF67B" modified="2016-01-20" version="1">MSDAHTPDPTGHELVPAGPIPDPGLPEHQWRPTDVDPAKEKRAERQVASLLGLSAVCVILFLVSYFTLDIGDNWHVVAGFGASTMALGASLGFALLLIGVAIIHWARKLMGDHEISELRHPARSTDADREGTLEALSLGLEESGIGRRPLIRNSLLGALGILGLAPVVLLRDLGPLPGDKLYHTIWGKGTKSKPMRIVRDGIWTPILASDLENGDLVNCQPDALHNPERYGIDPTEVEGVNLQIHKSKASLVLLRMDPGDIKPGKDANGNSRENWDVNGIVAYSKICTHVGCPISLNERTTHHLLCPCHQSTFDLANSGKVVFGPAGRPLPQLPIAIDDEGYLVAQSDFDEPVGPSFWERDYYDRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVZ1</accession>
    <name>A0A0Q8VVZ1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Deoxyuridine 5'-triphosphate nucleotidohydrolase</fullName>
            <shortName evidence="4">dUTPase</shortName>
            <ecNumber evidence="4">3.6.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">dUTP pyrophosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">dut</name>
        <name evidence="6" type="ORF">ASE19_22785</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>dUTP + H2O = diphosphate + dUMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10248"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61555"/>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <dbReference type="EC" id="3.6.1.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Pyrimidine metabolism; dUMP biosynthesis; dUMP from dCTP (dUTP route): step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the dUTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.23" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892591.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58893">
        <property type="protein sequence ID" value="KRC58893"/>
        <property type="gene ID" value="ASE19_22785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1669228at2"/>
    <dbReference type="UniPathway" id="UPA00610">
        <property type="reaction ID" value="UER00666"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004170">
        <property type="term" value="F:dUTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006226">
        <property type="term" value="P:dUMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046081">
        <property type="term" value="P:dUTP catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07557">
        <property type="entry name" value="trimeric_dUTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00116">
        <property type="entry name" value="dUTPase_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008181">
        <property type="entry name" value="dUTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029054">
        <property type="entry name" value="dUTPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036157">
        <property type="entry name" value="dUTPase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033704">
        <property type="entry name" value="dUTPase_trimeric"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11241">
        <property type="entry name" value="PTHR11241"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00692">
        <property type="entry name" value="dUTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51283">
        <property type="entry name" value="SSF51283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00576">
        <property type="entry name" value="dut"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 4" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="dUTPase" evidence="5">
        <location>
            <begin position="17"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="66"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="83"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC58893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="15804" checksum="5EA70981443B6E80" modified="2016-01-20" version="1">MPHDLEIAVQQLDPDLPLPAYAHPGDAGADLVSTVDLTLAPGERALVPTGVAIALPEGYVALIHPRSGLAARHGLSIVNTPGTVDSGYRGEIKVLLINHDPSEAIVLRRGDRVAQLVVQRYERASFVAVQTLPESVRGAGGYGSTGGFGRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW19</accession>
    <name>A0A0Q8VW19_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_24060</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894033.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57399">
        <property type="protein sequence ID" value="KRC57399"/>
        <property type="gene ID" value="ASE19_24060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2229309at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="86"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="19984" checksum="75F421B3F2A73994" modified="2016-01-20" version="1">MAAAFSRANVATIAIVTGIALVSGTGGAVAGAMITGRQIKDGTVTSIDIANGNLTGADVKNGSLGTTDLSAAAKASLKGATGPAGVPGPPGAPGAPGAPGAPGAPGTPASLSAGYTIVHERGAESVPGGNAVVNVYCPNGSWAVGGGGAFDQTSAAVSTSVPVKATRDGGVPTGAITTPTTYADAWRVEGRNTGAIDMAVSGYVICVPATP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYX8</accession>
    <name>A0A0Q8VYX8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Molybdenum transport system permease</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_00525</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896786.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59554">
        <property type="protein sequence ID" value="KRC59554"/>
        <property type="gene ID" value="ASE19_00525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1915735at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015098">
        <property type="term" value="F:molybdate ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011867">
        <property type="entry name" value="ModB_ABC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006469">
        <property type="entry name" value="NifC_ABC_porter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01581">
        <property type="entry name" value="Mo_ABC_porter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02141">
        <property type="entry name" value="modB_ABC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 8" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="57"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="91"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="125"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="181"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="236"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="53"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU365097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC59554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="26900" checksum="894EC11082F9A1C1" modified="2016-01-20" version="1">MSRSRHVGLPRWVYLPAALAGVFVVLPVASLATRIAWADFPGLVTSDAALSALDLSLRTSAASTLLCLVLGVPLAVVLARSEARWLGPARSLVLLPLVLPPVVGGIALLAAFGRKGLLGAQLEAWGIQIAFSTIAVVMAQTFVSLPFLVVSLEGALRTAGERYDVVAASLGAAPTTVLRRVTLPLVLPGLASGAVLAFARSLGEFGATVTFAGSLEGTTRTLPLLIYNLRVTDADAAVAMALLLVVVAVLVIGLVRPRGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZ11</accession>
    <name>A0A0Q8VZ11_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Peptidase C26</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01425</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896629.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59712">
        <property type="protein sequence ID" value="KRC59712"/>
        <property type="gene ID" value="ASE19_01425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1628378at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011697">
        <property type="entry name" value="Peptidase_C26"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044668">
        <property type="entry name" value="PuuD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43235">
        <property type="entry name" value="PTHR43235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07722">
        <property type="entry name" value="Peptidase_C26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="243" mass="25268" checksum="AE264F8572C1189E" modified="2016-01-20" version="1">MSRRPLIVVPARFSASASALRYGADVASRSLIEAVYAAGGEPLVVHPAAPDGAVDVTEVAERLWFADGVLLPGGGDLAAHWSGQEPHPTLYDVDEVQDAFDLAVARHALAHGLPLLAVCRGNQVVNVALGGDLVQDLGERIHRHVVQEIAVDPASALAALVGTVPTISCYHHQGIGRLGTGLRAVAHAPDGVIEAVELDGATSWYLGVQWHPEDTAATDPVQAGLFAELVAQASSRASSRASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UME7</accession>
    <name>A0A0Q8UME7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20210</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895961.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46188">
        <property type="protein sequence ID" value="KRC46188"/>
        <property type="gene ID" value="ASE19_20210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1884713at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021903">
        <property type="entry name" value="DUF3515"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12028">
        <property type="entry name" value="DUF3515"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359213" evidence="1">
        <location>
            <begin position="19"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="16698" checksum="6A4E7F1D021F5438" modified="2016-01-20" version="1">MRRPAAALALLLIAPALAACGGPVDVDVPEMSDADRAACDAFTAALPSTLAEHEREEVDPADAPAAAYGDPAIVVRCGVPEPEGFSLASSCEQANGMGYYIPDEQYGDRDLDLTMTAAGYRPRVEVVVPAQYRPNANAAAMAELAPLVKEYLTLVDDCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMI1</accession>
    <name>A0A0Q8UMI1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20405</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895990.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46219">
        <property type="protein sequence ID" value="KRC46219"/>
        <property type="gene ID" value="ASE19_20405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1110723at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359218" evidence="1">
        <location>
            <begin position="38"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="142" mass="15410" checksum="178CD56135A200B7" modified="2016-01-20" version="1">MNTTHRVGTIRRIALTLLATFAALTGTIAATGQPAQAASYGSITGCFQATSNTQWGTYTAPQKFSTVYVDVWNGSAWVARATTSTGSNGCVTYSVQTGYYWHLRMDYYSRPYRTVGTSNWAYVGSTGNYNVGWTNASIVWVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMS0</accession>
    <name>A0A0Q8UMS0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46296">
        <property type="protein sequence ID" value="KRC46296"/>
        <property type="gene ID" value="ASE19_20870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1974837at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="127"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="189" mass="19749" checksum="F91F40661BEB5358" modified="2016-01-20" version="1">MLGLLVMPVAPAGADPIVEPESIPTSCHIGAPNVTVGDRVRLRIEVSSNSNIPEVGTVELAISTASARQSARLAARGVVWTKTIRYEGTPVVVVGPKLPRGQYRVTMAFEPDNEAFIPCHNAARFRVGAGGDTGGEDDDNPNLPNTGGPERWPLFVGLALLVAGSGLVGGSRRFRGAAHVTGSHRTALP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMW7</accession>
    <name>A0A0Q8UMW7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">FAD_binding_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21135</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the 3-hydroxybenzoate 6-hydroxylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896113.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46342">
        <property type="protein sequence ID" value="KRC46342"/>
        <property type="gene ID" value="ASE19_21135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="504558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044560">
        <property type="entry name" value="MO/PqsH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45934">
        <property type="entry name" value="PTHR45934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_3" evidence="3">
        <location>
            <begin position="6"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00024018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="362" mass="37749" checksum="9942E343D155BC2B" modified="2016-01-20" version="1">MADEQLVIAGAGIAGLALAAGLRNAGSSWSCVLLDERPALGSTGGAITLWPAALAALDRIGVGADLRAAGHAVGPGSIRARDGRVLRRLDVPLLAVRRGELVEILHGRVAPGTVSFGTAVTGHERTSGGVRVLTAAGPLDAAALVGADGYRSQVARTLQPGLGERYAGYPAWRGLTRADGLEPFQVWGEGREFGVVPLDRGESYWFATLPEPAGGTAPDELAHLRTAFADWPEPVRRALAAAEPGTVSRNDVMDRDRLRRWTDGPVVVIGDAAHPMRPNLGQGGCQALVDAALLASLLAATGASPAVAFAAFEARRRRTVGRVARASRAAGRAVEAPEVLHRLSALVPDPVFRRVLMRVVGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNQ5</accession>
    <name>A0A0Q8UNQ5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CinA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896365.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46596">
        <property type="protein sequence ID" value="KRC46596"/>
        <property type="gene ID" value="ASE19_19700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1834406at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036653">
        <property type="entry name" value="CinA-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008136">
        <property type="entry name" value="CinA_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02464">
        <property type="entry name" value="CinA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142433">
        <property type="entry name" value="SSF142433"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00199">
        <property type="entry name" value="PncC_domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CinA" evidence="1">
        <location>
            <begin position="9"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="16060" checksum="686564015D54DB06" modified="2016-01-20" version="1">MRTEAVTGVVEQIAQLAAERSLTVACAESLTAGAIAGALARGEDAASWFAGSVVSYMSEVKFEVLGVTEGPVVTASCAEEMVCGVSTLLGADAAVAVTGVGGPGEEEGEPAGTVFVATRVGSRSAVTRHQFDGDPPTVLEQTVATAIGRLLASLRAAYDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8URE6</accession>
    <name>A0A0Q8URE6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_20875</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896068.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46297">
        <property type="protein sequence ID" value="KRC46297"/>
        <property type="gene ID" value="ASE19_20875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="10"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="125"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="232"/>
            <end position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="389" mass="41809" checksum="B0CEC7F93BBF5530" modified="2016-01-20" version="1">MSDYPMYALSEEQQAIREAVRAVCDAKVAPFAAEVDEDARYPQEAHDALLAADFHAPHVPEQYGGAGADALATVIVIEEVARADVSASLIPAVNKLGSLPVMIGGGEEIKKKYLTKLAAGEGGFSYCLSEPDAGSDAANQKTRAVRDGDGWILNGTKRWISNAGESEFYTVLATTDPDARTKGISAFVVEKSDEGVSFGAPEKKLGIKGSPTREVYFDNVRIPGDRIIGEEGKGFEYAMKTLDHTRITIAAQAVGVAQGALDYALGYAKERQQFGKAIADFQGLQFLLAEMGMKVEAARQLTYAAAGRSQRGDADLTFFGAAAKCFASDVAMEVTTNAVQVLGGYGYTRDYPVERMMRDAKITQIYEGTNQVQRIVMARQLLAGVQSEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU36</accession>
    <name>A0A0Q8UU36_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Ionic transporter y4hA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_21210</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896126.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46355">
        <property type="protein sequence ID" value="KRC46355"/>
        <property type="gene ID" value="ASE19_21210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="988251at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004837">
        <property type="entry name" value="NaCa_Exmemb"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01699">
        <property type="entry name" value="Na_Ca_ex"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="9"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="65"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="101"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="134"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="167"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="229"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="256"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="295"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="329"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="353"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="domain" description="Na_Ca_ex" evidence="6">
        <location>
            <begin position="40"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="Na_Ca_ex" evidence="6">
        <location>
            <begin position="229"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="372" mass="38301" checksum="9DBC7AEB7EAFC1B5" modified="2016-01-20" version="1">MSASTSGRLGWTVYTPPVAAVVLGVSWGTHPGPLAASLIGVALIGAVLAAVHHAEVVAHKVGEPFGSLLLAVAVTVIEVGLIVMLMVSGNGETSTLARDTVFAAVMITVNGIVGIALVVGALRHHLAVFNPEGTGSALATVITLAGLTLVVPTFTTSEEGPVLTGDQLTFAALASLVLYGSFVFTQTVRHRDFFLPGTTSTPGGWTTENDLDGDDHADPPTTRETQRSLALLVLSLVTVVGLAKVESYSIEDAVDWFGFPHAVVGVVIAMLVLLPETIAAVRAASRERVQISLNLAYGSAMASIGLTIPAIAVASIWLEGDLALGLEPMQLVLLALSATVGILTVVPGRAKPLNGIVHLVLLAAFLLLTVSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU99</accession>
    <name>A0A0Q8UU99_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17590</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893148.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48744">
        <property type="protein sequence ID" value="KRC48744"/>
        <property type="gene ID" value="ASE19_17590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1859598at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="146" mass="16367" checksum="75F07304F6D45E89" modified="2016-01-20" version="1">MNETTEPQITLQAPAIVFPGASARHENAYRTAHDLLSRRAPREALAVLEPALEEEPTNRGLRSLRAWAYLMRAQLQKAHDELRGLVDEDPSDAWTRHALGRALERQARYDDALPHLRLAAAMTGDPEHEYDVLRVERMAGKVTPGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUA1</accession>
    <name>A0A0Q8UUA1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21470</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896173.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46403">
        <property type="protein sequence ID" value="KRC46403"/>
        <property type="gene ID" value="ASE19_21470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="92708at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032109">
        <property type="entry name" value="Big_3_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16640">
        <property type="entry name" value="Big_3_5"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359431" evidence="1">
        <location>
            <begin position="31"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="2">
        <location>
            <begin position="147"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="2">
        <location>
            <begin position="242"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="430" mass="43754" checksum="753765EA0073BAEB" modified="2016-01-20" version="1">MLLVRRLLVALLLTAPLVATGPVPLPAARADDGREPAYLVLSPHEIWSFYGDPVDVTVYGLSEAGPVLSPVTVFASGRAVGTAALEPTGNAWSEAHFTFPGHLEPGSYTLYATFAGDDRFAPASTHEYPYDVVPAETSVSVTASPATPWAQQRVTVTATVTPSTDAAELTGTVTFRDRDDVVAVRPVGEDGTASVTTEVPAGSTRIVARYSGDAHFEYSEGQVDLYGRLVPTTTSVTHQGGSLTYGDPVHLDGLVTSTVADMGAPTGGAVTFTVDGHAVGTVAPVPGAGVTSLAGLDLDTLGAGPHRVGASYGSSPGFEPSTATSFDLVVAKRATTMSAAPVFLGLNPFAMPNGVLRATVRGGGTVTAGLPVTFTAGRTALCTATTDASGVAICDARTQKLALTLNGGYVATFAGDANNLGSSARGNLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUE3</accession>
    <name>A0A0Q8UUE3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_17785</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893180.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48778">
        <property type="protein sequence ID" value="KRC48778"/>
        <property type="gene ID" value="ASE19_17785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1048863at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="270" mass="28609" checksum="A9B53497DE7FA5DF" modified="2016-01-20" version="1">MSTSIAAEGISLGYKGHPVIEGLDLELPAGKVTAIVGPNACGKSTLLRGLARLHPLSAGTVRIDGRDAAALSRRQLARVLGVLPQSSVAPDGVRVAELVGRGRFPHQGWFGRHTSQDDEVVLRSLEATGVADLADRRLEELSGGQRQRVWIAMVLAQETDAVLLDEPTTYLDVTHQLELLDLLSDLNEQRGTTVVMVLHELNHAARYADHMVVMAGGRIAGQGAPGEVLTAASVREAFGLDAEVIPDPVTGGPLVVPRGRTRRGLAGTLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUK5</accession>
    <name>A0A0Q8UUK5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18350</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917994.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48878">
        <property type="protein sequence ID" value="KRC48878"/>
        <property type="gene ID" value="ASE19_18350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2117127at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359447" evidence="1">
        <location>
            <begin position="26"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="266" mass="28776" checksum="C8BF449FD8C47872" modified="2016-01-20" version="1">MPRLIPLLALALTGALTSFSPSVAASEAPSPAVTVPAVGAPQTFFRGNLGPYSIRPQIRLRIDPAVEMNLPDATGEENRTWDVQVLRADMRAATRPAWQTAITGTTEQWHQLLVGSGRVICVRARQTSWGVTGAWSYRSCVVRALDDQALRHVGPLRVVDDWRYVDGHASRILARTRVVMGGIPAGAEYGPVLTDRGIRPDGTVCNKPRWKIAGQREPGYAIGVSTGPLDLLMHRTRVAGTAVMRSPYGPSCPVGGFIVVPSWVPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUL4</accession>
    <name>A0A0Q8UUL4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18390</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893286.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48885">
        <property type="protein sequence ID" value="KRC48885"/>
        <property type="gene ID" value="ASE19_18390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1196738at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="32"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="279" mass="29937" checksum="5FC66F85C4CB81E8" modified="2016-01-20" version="1">MTTAWKTTPTKAIDVDGTSFAYRELGEPGGVPVVFLHHLTAVLDDWDPRVLDGVAAKHHVIAFDNRGVGSTGGRVPTDVAQMGADAIAFIRALGHDQVDLIGFSLGGGVAQMVALQAPDLVRRLVLAGTGPRGGGGIWKMPFIVGGAYAKAFLSRKDPRHFLFFPRTREGKKAANAYFARLAERTSDLDTPISRQAGIAQVRAITSAGLHRADDLSQIKVPVLVANGDNDLMVASEHSRDMAARLPDSRLRIYPAAGHGGVFQYHHEFVPEVLDFLGAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUN0</accession>
    <name>A0A0Q8UUN0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18430</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893292.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48891">
        <property type="protein sequence ID" value="KRC48891"/>
        <property type="gene ID" value="ASE19_18430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1844290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="220" mass="23542" checksum="3DCC10318D6148E6" modified="2016-01-20" version="1">MSLLAVSDAAVRLGISTRQVQHLVARGDLRSLARGVVDETSVERLLAVRRGSHTRAWAESTAWAAVALLSGLDAGWLGESQRSRLRGRLRGLGAEELIERARGRASVSRYVAHRSAGERLRSELVDTASAAERLGLAATNVIDGYLAATAAKAVVSRHSLIRDDTGIVTLRATSMDLDVLRELVSASDVLAALDLAESLDVRERRAGVDALGRALDVFRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUP4</accession>
    <name>A0A0Q8UUP4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF262 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17945</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893205.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48804">
        <property type="protein sequence ID" value="KRC48804"/>
        <property type="gene ID" value="ASE19_17945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="669483at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004919">
        <property type="entry name" value="DUF262"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03235">
        <property type="entry name" value="DUF262"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF262" evidence="1">
        <location>
            <begin position="24"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="778" mass="87191" checksum="87C8EF696C3C7832" modified="2016-01-20" version="1">MSRIESFTRMFEPDTAHGAVITRVEIPLIQRDYAQGRRGEKIDDIRARFLEYLREALAGSAPKPASLDFVYGELKADGTLQPLDGQQRLTTLFLLHWYLAARTGQLGDDLGWTRFTYETRPSARRFCQRLVASTPPLGASRLSEWVQDQPWYLFVWRYDPTINSMLVMLDAIDETFADVDAGLAWQRLTDPDEPAISFHLLPLPDMGSAEDLYVKMNSRGKPLTDFENFKARFEKVIEWSDKSAEFALRADTVWSDVLWAYRGDDDLVDDEFLRYFDFVTEVCEWRGDLTPGGAGEMTRLQRATNVYGANNPSAADNLSFLFAAFDVWQGRDVDETFAKLFAEPAAAAGAGGLPLFFRDPEINLFHAACRRYGDTAGGGNRLFTFGQTLLLYAVVLSLADAPDDHEHEFPGRLRTLRNLVEGSQYEMRAERMPRLLADSRALVLHGELPEAGNTFAVAQIEDEQDKRAFLETHPALATEIHRLEDHALLKGSTTAFELDAEALPARVAVFEQLMGDPSLWWDLTGALLTFGDYQWPRQRNGTLDDSESFQFGTWDAKYSDTWREVLVGRSRPQASGTCAVLADLLDAVASSDTPLPVTLEQLQATWLQAREESSSFDWRYYVVKYRHMREGASGLYYAHGRTMGFSLTNLPGGKKYRNAYFHDPYLLTIYHELGAPDTVVRPSFSGYEWDPRWMLLSASRTGVRCVPAGFELLAPPAGGQNHVFAPAAFDLGAVAIGEDESRVLVTVPKASSEVTGPDAEDRIQHGSDIIRALIDAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUQ9</accession>
    <name>A0A0Q8UUQ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cob(I)yrinic acid a,c-diamide adenosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17445</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893123.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48719">
        <property type="protein sequence ID" value="KRC48719"/>
        <property type="gene ID" value="ASE19_17445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1690483at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008817">
        <property type="term" value="F:cob(I)yrinic acid a,c-diamide adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00561">
        <property type="entry name" value="CobA_CobO_BtuR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003724">
        <property type="entry name" value="CblAdoTrfase_CobA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02572">
        <property type="entry name" value="CobA_CobO_BtuR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015617">
        <property type="entry name" value="Adensltrnsf_CobA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00708">
        <property type="entry name" value="cobA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="198" mass="22167" checksum="4FD77013CB64E479" modified="2016-01-20" version="1">MPEGQPLVVPNDGLTTRQRRNRPLVMVHTGDGKGKSTAAFGLALRGWNQGWDIGIFQFVKSAKWRLGEQTAFEMLPPGKGSVEWHKMGSGWSWSRKAGSEEDHAADAAEGWAEIKRRIAAEQHDLYLLDEFTYPINWGWVDIDDVVETLANRPGNQHVVITGRRADPKLVELADLVTEMTKVKHPMDAGQKGQKGIEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUV8</accession>
    <name>A0A0Q8UUV8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">MFS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_18895</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893370.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48968">
        <property type="protein sequence ID" value="KRC48968"/>
        <property type="gene ID" value="ASE19_18895"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044770">
        <property type="entry name" value="MFS_spinster-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23505">
        <property type="entry name" value="PTHR23505"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="52"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="82"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="107"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="141"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="172"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="235"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="276"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="302"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="328"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="374"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="496"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="17"/>
            <end position="426"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC48968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="533" mass="55899" checksum="C673A8FE6C83D04F" modified="2016-01-20" version="1">MRAPLQHYPSATTRAGQLAVVILVTVTTYYAVNVHGAVSTLIIDRFDMSLGFYVTVSILGNLLGAFASLATGVTDRFGRVDVVVVGMAAVALLTGLVIPAADTRGEYLTWSVLSAMVEGFVLVLTPTLVRDFSPQLSRGTAIGIWALGPVLGNLLATQVASRTLDAHPDWAFQFRVCGVVGAVATVVVALTLRELAPAVRNQVVHDARAQPVGATAPTTRVGTLEGFRVMLTPRIVLPALGFALFLLFYVTRLGFFVIYFATTFGYTAARANALENWSWTFTGIGLVLWGFVGDRIGARKPLIVAGLVVGVAAVSCWAVLATRPGTSYATWAVILSVAALGGSAATANWQAAFTEAVENHRPDLVATGMAVWGWILRVVGASAAFAITLLVPAAGVLVDHGPEVSRISTTYAAELATLRTITPEHRAALTATTGDPAAQRAAVGDIVKATGVPVPEAAAALAATGDVPAADLAYLQAHGPDVAESAKDSAGEWQRWWWVCVAGELVALALVFTLPGPWRPAARPVQRLSARSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV16</accession>
    <name>A0A0Q8UV16_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 9">Guanylate kinase</fullName>
            <ecNumber evidence="2 9">2.7.4.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">GMP kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">gmk</name>
        <name evidence="11" type="ORF">ASE19_19355</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Essential for recycling GMP and indirectly, cGMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + GMP = ADP + GDP</text>
            <dbReference type="Rhea" id="RHEA:20780"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.8"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the guanylate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.8" evidence="2 9"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893448.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49046">
        <property type="protein sequence ID" value="KRC49046"/>
        <property type="gene ID" value="ASE19_19355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1502854at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004385">
        <property type="term" value="F:guanylate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00328">
        <property type="entry name" value="Guanylate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008145">
        <property type="entry name" value="GK/Ca_channel_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008144">
        <property type="entry name" value="Guanylate_kin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017665">
        <property type="entry name" value="Guanylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020590">
        <property type="entry name" value="Guanylate_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00625">
        <property type="entry name" value="Guanylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00072">
        <property type="entry name" value="GuKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03263">
        <property type="entry name" value="guanyl_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00856">
        <property type="entry name" value="GUANYLATE_KINASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50052">
        <property type="entry name" value="GUANYLATE_KINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Guanylate kinase-like" evidence="10">
        <location>
            <begin position="3"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="10"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00030128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC49046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="188" mass="20708" checksum="E0D35EAA6D516024" modified="2016-01-20" version="1">MSAKLFVLAGPTAVGKGTVAAAMRDQHPEIYLSVSATTRPPRPGEVDGVHYHFVSVEEFDRLVAEGQMLEWAVVHGVHRYGTPRGPVTEALAAGRPALLEIDLQGARQVRETAPDAVFVFLKPPSWEELVRRLVGRGTEDEEERERRLATAREELAAEAEFDVTIVNREVHSAVEELVSLMVDSSTEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV21</accession>
    <name>A0A0Q8UV21_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18180</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893248.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48847">
        <property type="protein sequence ID" value="KRC48847"/>
        <property type="gene ID" value="ASE19_18180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1583074at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CN hydrolase" evidence="1">
        <location>
            <begin position="24"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="34069" checksum="2289DA7B072AE029" modified="2016-01-20" version="1">MKLITAPALPSLARVGPDRPGRSLTVGVVQMHWQCDADAHTAALAEGVRQAAGAGAQVVFLPELTLSRYPADYRPEGRAADLAESIEDGPTRVLAEKLAREHGVFVHASLYEEAPAADGSDDGLGYNTAILVSPEGTLAGRTRKVHIPVTEGYFEDLFFRGGPAEDAYPVHVADLPGSPRLGLPTCWDEWFPEVARAYSLADAEVLAYPTAIGSEPDHPDFDTQPLWQQVIVGNGIANGLFMCVPNRWGDEGRVSFYGSSFVSDPYGRILVQAPRSGDAVLVATLDLDQRTDWLELFPFLATRRPDTYASLVAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV44</accession>
    <name>A0A0Q8UV44_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19535</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893479.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49077">
        <property type="protein sequence ID" value="KRC49077"/>
        <property type="gene ID" value="ASE19_19535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2069936at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359461" evidence="1">
        <location>
            <begin position="20"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="101" mass="10648" checksum="66CF2DDF4DB1D3AF" modified="2016-01-20" version="1">MRLASAAAVGLMLSSVACGAESTSDPSGLRECSDVWNEGAQLPTTYSGCTVDGQLVTPELLECNSDGERWTTYDRFAAVLGGEIFAFSETRDVDTVVSVTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV54</accession>
    <name>A0A0Q8UV54_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_17655</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49094">
        <property type="protein sequence ID" value="KRC49094"/>
        <property type="gene ID" value="ASE19_17655"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="41"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="71"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="100"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="130"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="160"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="200"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="247"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="280"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="318"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="349"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="390"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="421"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="452"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="486"/>
            <end position="512"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="532"/>
            <end position="553"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="2"/>
            <end position="557"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC49094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="571" mass="59037" checksum="18C95A7E3921ECDB" modified="2016-01-20" version="1">MLLAFCAVAVAFAAVDTYVVVLALPDMMAGVGIPVDELQRAAPIVSGFLLGYVAMLPLIGRIADLRGQVPVLAMSLVLFSIGSLVTATCYDLPSMVVGRFLQGVGGGGLVPATMSLVAALYPVERRGLPLGLVSAVQEFGSVLGPLFGAMVLSFTSWRGIFAINLAGGAALLVAVGLLVRHRSPGAEEVAPRASRDRRTLLARVIAVVLLTATVVTGLVTFLQPSDLQRDLTWGQLFIPYVDGGSRWITPIGVATIGCALALALWCWFLPRALVDLRGWLGHLVAADLLGAALLATVLGGVVLAFATADPEVAVFSRQGPWFLAGSALALVLLLLHLRRAADPIVPRGALAATPAWGSLLVSFLVGWALIAALVDIPLFARTTTERDSQLGAALVLLRFLAALPIGAVLGGWLLQRVPAGVLTAVGMGSASLSFLLMVQWDQHSLDGFASNLPLVLGGFGFGLALAPVNAAILASTDDDTHGLASALVVVARMVGMLVGISALTTIGLRRLYAAQASHPDLDLRELGIVQEHAVFVGASVAALAAGVLALVVFARAGTRGVDTAKVLRAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVH4</accession>
    <name>A0A0Q8UVH4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19130</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49007">
        <property type="protein sequence ID" value="KRC49007"/>
        <property type="gene ID" value="ASE19_19130"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="317" mass="35751" checksum="EB6560C7C915C11A" modified="2016-01-20" version="1">MQLRRELLGQGETDRTLAAALKAGRLDRPRRGAYCHAPAWLALSDEEKYAVRCRAAYQQSCTGVVLSHVSALPFHGGPLWGLATDEVHLTRADGLSGRREAGIRRHRGSLYDGDVVEIHGLSVMSALRATLEVSMFGATEAALAVANHFLHEGEFSSAELRERYERSMNHWPESGPTEVMIRLADPRIESVGESRSLYFFYQHGFPKPVPQYEVRDGDRVIARLDFAFPDLGFWVEFDGRVKYDAHLRPGETPVDVVLREKRREQQIAEATGWRCFRITWADLAEPERLARRLRAFMRSVAAERSRRLVGPPDLAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVK3</accession>
    <name>A0A0Q8UVK3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ribonuclease BN</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_18920</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49124">
        <property type="protein sequence ID" value="KRC49124"/>
        <property type="gene ID" value="ASE19_18920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1421045at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017039">
        <property type="entry name" value="Virul_fac_BrkB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30213">
        <property type="entry name" value="PTHR30213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03631">
        <property type="entry name" value="Virul_fac_BrkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF035875">
        <property type="entry name" value="RNase_BN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="82"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="122"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="163"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="194"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="235"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC49124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="285" mass="31256" checksum="A600B4BA3E6473D2" modified="2016-01-20" version="1">MRYRVTGLAAEGAFFAVLSVPPLIFALAGGVGYVTEHFTAAQVEEVRRAVVDLFSAFLTDTAVNRVIVPTMNDVLEGGRFDVISLGFVLALWSGSRALNVFVDTITIMHGLGGHRGIVKTRALSFVLYILAVITGAITLPLVVAGPRLVRSWLPNRAEFLMQFYWPLVVVICICFLATLYHVSVPVRTRWSFNLPGATFSLVSWIAGSYLLRWVLTVTAQDSHSIYGPLAAPIAILIWLYIVALAVLIGAGVNAAFDEVFPQEATQRARRELMARLLRRAPDPVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UW93</accession>
    <name>A0A0Q8UW93_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">FAD-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20415</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895992.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46221">
        <property type="protein sequence ID" value="KRC46221"/>
        <property type="gene ID" value="ASE19_20415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="418913at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="519" mass="55039" checksum="15288451D835B9B5" modified="2016-01-20" version="1">MTRYDAVVVGGGHNGLTAAAYLARAGLSVLVLERLGHVGGAAVSTQAFPDFPTRLSRYSYLVSLLPEQVASDLGLNLQLVSRTTASYSPVVRGGRPVGLLVERDEGEATRTSFRELTGSDEEYDAWRTFYDEVGRLAEVVAPTLTQPLVTDATLRAAVDPVTWRDVVERPLGEAIERRFRDDLVRGVVGTDALIGTFASLRDPSLVQNRCFLYHLIGNGTGEWRVPVGGMGAVTSALHASAVAAGATVVTGAGVSAVAPGEDAEVRWHDGATEHTASARFVLANVAPWVLRILLGEEEDPTTKPEGAQLKINFLLSRLPRLRTGIDPAVAFAGTLHLAESASDLEVSWAAARRGELPSPLPGEVYCHSLTDPSILGAVPPGTHTLTYFGLHTPARLFEDSPAQTKAEAVRRAIASLDAVLEDPIDSVVMRTPSGEPCIEAKIPQDVEAELAMPGGHIFHGHLDWPWASARARLETPAERWGVQTSYDGVLLCGSGARRGGAVSGLGGHNAAQAVLESLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWQ8</accession>
    <name>A0A0Q8UWQ8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF4190 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21175</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896120.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46349">
        <property type="protein sequence ID" value="KRC46349"/>
        <property type="gene ID" value="ASE19_21175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1883152at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025241">
        <property type="entry name" value="DUF4190"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13828">
        <property type="entry name" value="DUF4190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="66"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="101"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4190" evidence="3">
        <location>
            <begin position="64"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="239" mass="24281" checksum="984C937E96DD4336" modified="2016-01-20" version="1">MSDPYGSNSGSNPYGPPSGQTPPPPPPAGGYGGGAGGGYGGGFGPPPGGFPGGGDSMPPKTDGLSIAALVLSFLCCLAPIGVILGIVGIRRTKGGQRKGRGLAIAAIIIGVIMSIATASLIAVGVFFADKVVTPGNAEVGQCVDVDENDDTIFLYKKECTEKHDAEIVGIAKVDSSNIEEIKSSMAGYCATAIAAEDLAKLSAHLQDVKAVIEDPKKVEKGDHLVCYVEPSDQLTEPLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXF4</accession>
    <name>A0A0Q8UXF4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavin reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896234.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46465">
        <property type="protein sequence ID" value="KRC46465"/>
        <property type="gene ID" value="ASE19_21835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1681849at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="28"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="180" mass="19920" checksum="FCA6B748D1A84DCB" modified="2016-01-20" version="1">MSGHAAQTQERDVVREQTVDAAEFRRHVSRFATGVAVISCEDQDGGFHGATVNSFVSLSLDPATVMVSLRPGRAHDIVRATGRYGASILLEDQQHASNHFARAREDSLAPEFLKRTSVPTLKDCLAWFECEVFEQVPVHDHMLFLARVTACGSGDGSPLLFYASQYHHQPRPVDLKSERS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY51</accession>
    <name>A0A0Q8UY51_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RNA polymerase-binding protein RbpA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rbpA</name>
        <name evidence="3" type="ORF">ASE19_16425</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="2">Bind 1 Zn(2+) per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Forms a complex with the RNAP catalytic core and with free principal sigma factors.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RNA polymerase-binding protein RbpA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893659.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50190">
        <property type="protein sequence ID" value="KRC50190"/>
        <property type="gene ID" value="ASE19_16425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1912152at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001000">
        <property type="term" value="F:bacterial-type RNA polymerase core enzyme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045893">
        <property type="term" value="P:positive regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01483">
        <property type="entry name" value="RbpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038638">
        <property type="entry name" value="RbpA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025182">
        <property type="entry name" value="RNApol-bd_RbpA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018527">
        <property type="entry name" value="Rubredoxin_Fe_BS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13397">
        <property type="entry name" value="RbpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00202">
        <property type="entry name" value="RUBREDOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="59"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="129" mass="14692" checksum="250B6C6F10322AC0" modified="2016-01-20" version="1">MAERTLRGARLGGQSFEDERGIEFAARQQVGYKCPQGHDFEITMSIEAEVPAIWECPRCGLEAESTAGIEREVKVEKPQRTHWDMLLERRSEKELEEILTERLELLRGGEIGPAHLHRANARKKKPAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY60</accession>
    <name>A0A0Q8UY60_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Urease subunit alpha</fullName>
            <ecNumber evidence="5">3.5.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Urea amidohydrolase subunit alpha</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5 13" type="primary">ureC</name>
        <name evidence="13" type="ORF">ASE19_16490</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5 10">
            <text>2 H(+) + H2O + urea = CO2 + 2 NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:20557"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16199"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.1.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 7 10">
            <name>Ni cation</name>
            <dbReference type="ChEBI" id="CHEBI:25516"/>
        </cofactor>
        <text evidence="5 7 10">Binds 2 nickel ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 5">Nitrogen metabolism; urea degradation; CO(2) and NH(3) from urea (urease route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Heterotrimer of UreA (gamma), UreB (beta) and UreC (alpha) subunits. Three heterotrimers associate to form the active enzyme.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="6">Carbamylation allows a single lysine to coordinate two nickel ions.</text>
    </comment>
    <comment type="PTM">
        <text evidence="5">Carboxylation allows a single lysine to coordinate two nickel ions.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 11">Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.5" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893669.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50200">
        <property type="protein sequence ID" value="KRC50200"/>
        <property type="gene ID" value="ASE19_16490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="157757at2"/>
    <dbReference type="UniPathway" id="UPA00258">
        <property type="reaction ID" value="UER00370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009039">
        <property type="term" value="F:urease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043419">
        <property type="term" value="P:urea catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00375">
        <property type="entry name" value="Urease_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01953">
        <property type="entry name" value="Urease_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011612">
        <property type="entry name" value="Urease_alpha_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017950">
        <property type="entry name" value="Urease_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005848">
        <property type="entry name" value="Urease_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017951">
        <property type="entry name" value="Urease_asu_c"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00449">
        <property type="entry name" value="Urease_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01752">
        <property type="entry name" value="UREASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01792">
        <property type="entry name" value="urease_alph"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00145">
        <property type="entry name" value="UREASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51368">
        <property type="entry name" value="UREASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5 7" id="KW-0533">Nickel</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Urease" evidence="12">
        <location>
            <begin position="132"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="5 8 9">
        <location>
            <position position="323"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="5 7">
        <location>
            <position position="220"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 9">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="275"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="363"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="5 6">
        <location>
            <position position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR611612-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR611612-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR611612-52"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC50200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="568" mass="59312" checksum="216FFB23253DEEEE" modified="2016-01-20" version="1">MVEISRAAYAALYGPTVGDQVRLGDTDLWIEVEQDWVIGGEEAVFGGGKSIRESMAQSMRTSAEGALDTVITNALVLDHWGIVRADVGIRDGRIVALGRSGNPDIADGVHPDLVIGPGTDVVSGEGKILTAGAIDVHVHLLSRSQLVEALATGITTIAGGGTGPSEGSKATTVTPGAWHLANVHRALDSVPLNILLFGKGNTVSAGGLAEQALGGAAGYKVHEDWGSTPAAIDASLRAADEFGLQVALHSDSLNEAGYVESTIGAIAGRGIHAFHAEGAGGGHAPDILTVASLPHVIPGSTNPTLPHTVNTVAEHLDMLMVCHHLNPQVPEDLAFAESRIRATTIAAEDLLHDIGALSITSSDAQAMGRIGEVVCRTWQVAHVMKARYGAHGDLAVGPADNARARRYVAKYTINPAVAHGIDHEVGSVEPGKLADLVLWDPRFFGIRPQVVMKSGALVWGALGDPNASIPTPQPVLMRPTLADDGSAHAVSFVSPAALEDGLEERLGLRRRLVGVRPTRALTKADMVNNTALPRIDIDPETFAIDVEGERIVAAPAGELPLAQLYAMF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY98</accession>
    <name>A0A0Q8UY98_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Magnesium transport protein CorA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">corA</name>
        <name evidence="7" type="ORF">ASE19_16680</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Mediates influx of magnesium ions.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893705.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50236">
        <property type="protein sequence ID" value="KRC50236"/>
        <property type="gene ID" value="ASE19_16680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="822653at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015087">
        <property type="term" value="F:cobalt ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015095">
        <property type="term" value="F:magnesium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045861">
        <property type="entry name" value="CorA_cytoplasmic_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045863">
        <property type="entry name" value="CorA_TM1_TM2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004488">
        <property type="entry name" value="Mg/Co-transport_prot_CorA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002523">
        <property type="entry name" value="MgTranspt_CorA/ZnTranspt_ZntB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01544">
        <property type="entry name" value="CorA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143865">
        <property type="entry name" value="SSF143865"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144083">
        <property type="entry name" value="SSF144083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00383">
        <property type="entry name" value="corA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="269"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="300"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC50236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="326" mass="36252" checksum="64378AC8525E5688" modified="2016-01-20" version="1">MIVDSAVYRHGVRLPVDCYPHDYSALRQAASRDHDFVWVGLYEPSHIELSEIAEAFELHPLAVEDAVVAHQRPKLEKYDNSLFLVLKTLWYVDEDDAVETGEINVFIGPDFVITVRHGRGSALSDARHALEQKQAVLDHGPSAVVYAVCDAVVDGYTSVVAELQVDVDEVEASVFSEQRTNDGNRIYILKRELSEVRRAVLPLREPMRRFATGASDLIEAEAGPFFRDVSDHLSQAADEIDTLDGLLSTAFDAHLARIGVQQNDDMRKISAGAALVVVPTLIAGVYGMNFTHMPELDWTLGYPFALLLMIVTVGGLWVLFKRSGWF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYM9</accession>
    <name>A0A0Q8UYM9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Urea ABC transporter permease subunit UrtB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_16460</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893888.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50360">
        <property type="protein sequence ID" value="KRC50360"/>
        <property type="gene ID" value="ASE19_16460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="974216at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017779">
        <property type="entry name" value="ABC_UrtB_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03409">
        <property type="entry name" value="urea_trans_UrtB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="64"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="94"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="145"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="194"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="220"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="244"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="268"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC50360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="294" mass="31071" checksum="59160087C9599B2A" modified="2016-01-20" version="1">MDAFTTPLLAGTATGALLLIAALGLALTFGQMGVINMAHGEFLMAGAYTTYLTQQVVTNTDLSILVALPAAFLVAGALGLLLEVAIIQWMYRRPLDTLLVTVGVSLLLQQLAKDVFGAQGDPVQTPGWLDGNIDVFGYHWPYRQMFTILLAVAALAALGALLRYTSYGRQIRATVQNRDLAETMGVSTRTVDRVTFFVGSGLAGVGGVAVSLISGTNPNLGTTYIISAFLVVVAGGLGQLRGTVIAAFTVGVVTAFFTDWFSSSMAQVLTFALVVVFLQLRPQGLFTVRTRGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYT2</accession>
    <name>A0A0Q8UYT2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893226.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48825">
        <property type="protein sequence ID" value="KRC48825"/>
        <property type="gene ID" value="ASE19_18065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1483891at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="305"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="305"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="328" mass="37240" checksum="DC92C2AE6FB11072" modified="2016-01-20" version="1">MDFLEWAAGRPFTTATAREHGVTRGQLRTWLADGVVRRMLIGVYVDATAPDTIELRVAAVSCVMAPHAVLCDRTAAWLHGVDVFELAEHDVLPAIDVVSEAGGNASTRSHVFGGERDLLPSEIMTVRGVRVTTPIRTACDLACLKGRWRAIAVLDAFRRAHGITMLDLTLMLPRYRRRRGCRQLRELIPLSTDEADSPPESWIRLIIHDAGLPVPAAQVWVRLPDGRRFKIENAYAALRIGVEYDGEENHTSDDDVEHDDDRRGHLVDVEDWIILVITKRDLGPREREAWLAELEEAIARRCPERPAKRVYARGPDDPSYRWRRRRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ66</accession>
    <name>A0A0Q8UZ66_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21840</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896235.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46466">
        <property type="protein sequence ID" value="KRC46466"/>
        <property type="gene ID" value="ASE19_21840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1077270at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041654">
        <property type="entry name" value="StyA_sbd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17885">
        <property type="entry name" value="Smoa_sbd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Smoa_sbd" evidence="1">
        <location>
            <begin position="147"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="410" mass="44998" checksum="D3E1C64FE3334A04" modified="2016-01-20" version="1">MSKKIGIVGAGTGGLHLALRLQQHGVDVTLYSDKRVEDYASMRLPNTVAHFAVTIDKEKALGVNHWQAGEVGYFGHHYYIGLPEPMRFYGDLRSPSRAVDYRIYLPTLLQDFIDRGGNVEYRAIEQGDYAALAEEFDLVVVSTGKGTGDMFPKIPELSPHTAPQRQLCVGIFKGIQQLPSRSVTMYFSPGAGEMIEIPTLTFNGLQNALVMENLPGGDLEILAKTKYDDDPEAFKTLLLEKIAKHYPTCFERIDQAEFGLANSGLDILQGGVVPAVRQTSAVLEGGTIALALGDVHNTVDPMLGQGANAAAQAAWIVAEEIIANDVFDARFVEKVDNRRNDRVHAATRWTNAMMANLENFPPEFGMFVGAVAQDRTLADTFTDNFNHPQNQWDIFSSPERVAAFCQSASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZB3</accession>
    <name>A0A0Q8UZB3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_22120</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896283.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46514">
        <property type="protein sequence ID" value="KRC46514"/>
        <property type="gene ID" value="ASE19_22120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1215743at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="25"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="71"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="96"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="131"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="165"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="198"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="224"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="277"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="331"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="407"/>
            <end position="427"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="441" mass="46412" checksum="3FD3E06360A73CEC" modified="2016-01-20" version="1">MTQVLDVSAVEEPDVRDRADVVRQVKTIVVLALVLVAEVWFKLSIDDPTVSQLLKGPRTLENQPVEFDGTLVSWTAVALTAIALVLAVLDRYPRGGLGVGLGVVLGLSFYAAFLMWAYADPTGAFAPSITNPLPGTISIATALVFGALAGVLCERAGVVNIAIEGQFIAGAFFGSVFSSIAVASIAALPLFWCPVFGLLGGILAGVGMAAMLGLFALRYHVDQVVVGVVLVAFGYGITSFLLGQIPADRKDDLNQPHLLEAVSIPGLSDIPYIGQPLFAQSLLVYAAYVSVPLVWWLLFKTKWGLRVRAVGEHPKAADTVGINVNRIRWQAVLLGGVFAGLGGASFTLSTGAFDKEMTAGLGFISLAAVIMGRWHPVWAAFAALGFGLLRDLKNQLGLLGDKVPGDLVAALPYIACIIAVAGFVGRVRAPAADGQPYIKSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2D9</accession>
    <name>A0A0Q8V2D9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15340</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cysteine dioxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896520.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51455">
        <property type="protein sequence ID" value="KRC51455"/>
        <property type="gene ID" value="ASE19_15340"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1571420at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010300">
        <property type="entry name" value="CDO_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12918">
        <property type="entry name" value="PTHR12918"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05995">
        <property type="entry name" value="CDO_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR610300-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="16628" checksum="01643E3834CD45E5" modified="2016-01-20" version="1">MTQLAVLPLLEVVRDHAADPDLLHLLDHDPQERSWIRLLTTEDYELWLISWPPGAATDWHDHGSSSGAFTVLEGRLTEHTFDGGLQLVDVGVGDGKAFGAGYAHDVRNATDRPALSLHAYSPRLTTMTRFRFRGDRLEALGVERAGEEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2E4</accession>
    <name>A0A0Q8V2E4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Glutamine-dependent NAD(+) synthetase</fullName>
            <ecNumber evidence="5 6">6.3.5.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5 6">NAD(+) synthase [glutamine-hydrolyzing]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5 8" type="primary">nadE</name>
        <name evidence="8" type="ORF">ASE19_17730</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>ATP + deamido-NAD(+) + H2O + L-glutamine = AMP + diphosphate + H(+) + L-glutamate + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:24384"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.5.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from deamido-NAD(+) (L-Gln route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5 6">In the C-terminal section; belongs to the NAD synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.1" evidence="5 6"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48768">
        <property type="protein sequence ID" value="KRC48768"/>
        <property type="gene ID" value="ASE19_17730"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00334"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003952">
        <property type="term" value="F:NAD+ synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008795">
        <property type="term" value="F:NAD+ synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00553">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02090">
        <property type="entry name" value="NadE_glutamine_dep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014445">
        <property type="entry name" value="Gln-dep_NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041856">
        <property type="entry name" value="NAD+_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022310">
        <property type="entry name" value="NAD/GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003694">
        <property type="entry name" value="NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23090">
        <property type="entry name" value="PTHR23090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02540">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006630">
        <property type="entry name" value="NADS_GAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 6" id="KW-0520">NAD</keyword>
    <keyword evidence="3 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CN hydrolase" evidence="7">
        <location>
            <begin position="12"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; for glutaminase activity" evidence="5">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <feature type="active site" description="For glutaminase activity" evidence="5">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for glutaminase activity" evidence="5">
        <location>
            <position position="176"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="209"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="371"/>
            <end position="378"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="461"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="485"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="490"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="495"/>
            <end position="498"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="641"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR006630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC48768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="685" mass="74829" checksum="0F406A29FA119EA2" modified="2016-01-20" version="1">MDFYSAYAHGFARVAAVTLPVAIADPATNAARTIEQARACHDEGVAVAVFPELGLTGYAVDDLFLQDVLLDAVHAAVAEIVAASADLMTIVVVGAPLRHGNRILNCAIVVHRGEVLGVAPKSYLPTYREFYERRWFAPGDDVVGEVVVAGTTVPIGADLIFDVTDVPGLQLHVEVCEDMWVPVPPSAQAALAGATVLANLSGSPITVARAEDRHLLARSASARCNAAYVYAAAGQGESTTDLSWDGQTMVYEMGDLLGQGERFPDGPRRTVVDVDLDRIRQERMRQGTFDDNRRALGLDIDAFRRIELTLDPPAGDIGLRRKVDRYPFVPDDAARLALDCYEAYNIQVSGLEQRLKALSPPSGQQPKIVIGVSGGLDSTHALIVAAKAMDRLGRPRSDIHAFTMPGFATGETTKSYATRLSRALGCTFQELDIKPAARTMLEGLDHPFSGGEPVYDITFENVQAGLRTDYLFRLANHRGGIVLGTGDLSELALGWCTYGVGDQMSHYNVNAGVPKTLIQHLIRWVIDTDQLHDGHYDDDADKVLQEILDQEITPELIPGGEQKTEDSVGPYALQDFTLHHVLRRGYRPSKIAFLAWHAWHDQAAGEWPPGFPEERRTAYDLPTIRKWLEVFVRRFFSSQFKRSALPNGPKVSAGGTMSPRGDWRMPSDASAAAWLAELSANVPER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4C6</accession>
    <name>A0A0Q8V4C6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Excalibur domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18945</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48977">
        <property type="protein sequence ID" value="KRC48977"/>
        <property type="gene ID" value="ASE19_18945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2061710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008613">
        <property type="entry name" value="Excalibur_Ca-bd_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05901">
        <property type="entry name" value="Excalibur"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359689" description="Excalibur domain-containing protein" evidence="1">
        <location>
            <begin position="43"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="domain" description="Excalibur" evidence="2">
        <location>
            <begin position="47"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="107" mass="11528" checksum="012A8332007ED5E9" modified="2016-01-20" version="1">MRTKPTRPPYGPAMITRRIATAATAVALALPVVALTSTEADAAGTYYSSCAKLTREFRHGVAKSATAAAKQVRLGNGRPATTARAKKVYWANYKRLDRDKDGTACER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6B3</accession>
    <name>A0A0Q8V6B3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11170</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894889.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52956">
        <property type="protein sequence ID" value="KRC52956"/>
        <property type="gene ID" value="ASE19_11170"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="21"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="237" mass="26382" checksum="C7109994AAFC89E7" modified="2016-01-20" version="1">MGTAKRDNTDGRKRRWQEHNAARRQAVIDAAIVVLNRDLAPGDELSVQQIADEASVHRTVLYRYFEDRVDLDLAIQREVCLQAGEVLLSTITLEGTIQEIVHRVIGAYVTWATDNIALMRFAEHQVNGTTERPLDDAIGQFAEQIEILIGGILALLDADVTEDDRDALTPWVFLLVGGVMAAVRNWSSRDELRPAAPAFIDLLAEVTWLQIEGLVASRNIEVPDVPVEQLLNLKEAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6C4</accession>
    <name>A0A0Q8V6C4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15395</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896529.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51465">
        <property type="protein sequence ID" value="KRC51465"/>
        <property type="gene ID" value="ASE19_15395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1356861at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="234" mass="23930" checksum="954829C4A8C7D821" modified="2016-01-20" version="1">MTRVIAVAGAGGPAGRAVVRRLAEAGAVVAAADADQARLDEAVARVGDGRLVEGQVVDLLDADATRAWIDGVVARHGRLDGLVHLVGGWRGGKGLTTEALDHWAVLEPLLVRTLQHTSLASQQALVAADGRFVVVSASGAGAPTAGNASYAAAKAAAEAWTLALAHAFGRSGGDAAATILVVKALLDDAMRAARPGAAFDGFTHVDDLAETIAGLWDRPSGELNGERLWLTPRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Y5</accession>
    <name>A0A0Q8V6Y5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">5-oxoprolinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10925</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894843.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52911">
        <property type="protein sequence ID" value="KRC52911"/>
        <property type="gene ID" value="ASE19_10925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="327092at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008040">
        <property type="entry name" value="Hydant_A_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002821">
        <property type="entry name" value="Hydantoinase_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045079">
        <property type="entry name" value="Oxoprolinase_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11365">
        <property type="entry name" value="PTHR11365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05378">
        <property type="entry name" value="Hydant_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01968">
        <property type="entry name" value="Hydantoinase_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydant_A_N" evidence="2">
        <location>
            <begin position="7"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="Hydantoinase_A" evidence="1">
        <location>
            <begin position="208"/>
            <end position="493"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="695" mass="73881" checksum="C15EB0AD750824CA" modified="2016-01-20" version="1">MTARRIRIGIDTGGTFTDVVAFDEDSGEVVTTKTPSTPGNPADGFLAGIDKVLEIAGAQFDDVVAVSHGTTVATNQLLEGKVDALGFITTAGYEAMLEIARQSVPDGYGNSYFWVKPDRIVPRDLVQGVGGRLDFTGAEIRPFDEDGARRVARWFRAKGIDTLGVCFLHAYANPAHEERMRAILAEEHPDAVVSISSEVLREYREYERSMTTLVDAAVKPKLSRYVTNIKDRLATQSGRTVPFYVMKSNGGVLSADEVVHQPITTVLSGPAAGALGAALIAKVAGFDKVLTSDGGGTSTDVSVVIDGDPTLTTEGSVGVYPSKIPMIDVVTVGAGGGSIAWLSPEGTLKVGPHSAGADPGPICYRKGGAEVTITDAHVFLGRIPPHLLGGEIPLDVDAASAAIQQLAGKLGITAEACATGILEISAWNQANALRQVTVKRGLDVRDFTLTTFGGSGSLLLCRLMDILNVPTVLVPPNPGNVSAFGLLTVDVKNDYVQTHVALQENLDPADLQHDYDALTERAAAALTKEGFAEADHAFVRTADVRYFGQAFEVRVGVPDGPVTTETLTTVADRFHAEHRVLYGYDFSGDPSQQVEVVNLRVSGIGPIKRPEILRADAPRPAPQPTGTRSVCFDAEAGYVETPIFWRPDLPAGQVLTGPVVIEEFGSTVPVHPGFTARVDDFANIIVTRTQQTEES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V705</accession>
    <name>A0A0Q8V705_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11980</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895027.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53098">
        <property type="protein sequence ID" value="KRC53098"/>
        <property type="gene ID" value="ASE19_11980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="370329at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="4"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="67"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="250" mass="26785" checksum="D4A9F2FB390947AC" modified="2016-01-20" version="1">MSVVQSVLTATRVLERLSEPGLVGVSEIARDLGAPKSSVQRMLLTLKEAGWAADVRGETTRWTLTPKMFRLGQHHHAGNGLRSTALPVMEQLRDATRETVHLVVQRDDTVVVVECLDSPQAVRAHVDPGDVLPLHASTNGRALLSTQPEQVLRDLISKGLTASTPSTVTDPAAFEDVIRRARERGFASGEGQFRDGVHAVAAPIVVGGVGIASIGVSTPAQRMTPELEEAFGQYVMDAARTIAGRFGEDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V732</accession>
    <name>A0A0Q8V732_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Response regulatory domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_11505</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53012">
        <property type="protein sequence ID" value="KRC53012"/>
        <property type="gene ID" value="ASE19_11505"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="3"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="209" mass="21728" checksum="8DFF74F6DE6E4DB7" modified="2016-01-20" version="1">MIRVGAIDDHPVVLSGVGAALTQFAPDLQLVAIADSADALIAAAPDGLDVVLLDLHMPGQAAAEESVAKLVDKGMVVLLFTAEEKPVPVRRAIAAGAAGLVLKVDPVEQIARSIREALAGELACSGQVAAALLTDASLSTRLSERQIEILQAVSTGLPYRLVARQLGISEVTVREHLSRAAKAYREGGVDIGNVHGLISRARADGHLDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V762</accession>
    <name>A0A0Q8V762_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">PspC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_12260</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895073.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53146">
        <property type="protein sequence ID" value="KRC53146"/>
        <property type="gene ID" value="ASE19_12260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2022704at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007168">
        <property type="entry name" value="Phageshock_PspC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04024">
        <property type="entry name" value="PspC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="48"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="domain" description="PspC" evidence="8">
        <location>
            <begin position="17"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="75" mass="8041" checksum="4CA0E9752D698265" modified="2016-01-20" version="1">MSNYDSYPAPQSTPKGRRLTRRRHGKMVAGVCGGIADHLGIDATIVRLLLVAAVIFGFGTGLILYVAGWILMPEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8I0</accession>
    <name>A0A0Q8V8I0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">GDT1 family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_14105</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the GDT1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897036.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53467">
        <property type="protein sequence ID" value="KRC53467"/>
        <property type="gene ID" value="ASE19_14105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2050363at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001727">
        <property type="entry name" value="Gdt1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12608">
        <property type="entry name" value="PTHR12608"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01169">
        <property type="entry name" value="UPF0016"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="36"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="65"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="97"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="136"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="168"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU365102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="192" mass="19827" checksum="B1DB5F38778AAE4A" modified="2016-01-20" version="1">MYAFLLSTAVIFVAELGDKSQLMAMTFAARYRARDVIIGITAATALVHLASVGIGALIGDAFADYQGPIAIVAGVAFLGFALWTLRGDELTEDEADKARNATGAAILAVGVAFFLAELGDKTMLATITLATREGWFGTWLGSTLGMVAADALAIGVGALLGRRLPEKVIAYGAATLFALFGVLLIVDGAGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8T3</accession>
    <name>A0A0Q8V8T3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FAD-binding FR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10830</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895177.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53624">
        <property type="protein sequence ID" value="KRC53624"/>
        <property type="gene ID" value="ASE19_10830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1630289at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013113">
        <property type="entry name" value="FAD-bd_9_SIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007037">
        <property type="entry name" value="SIP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039374">
        <property type="entry name" value="SIP_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30157">
        <property type="entry name" value="PTHR30157"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08021">
        <property type="entry name" value="FAD_binding_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04954">
        <property type="entry name" value="SIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="317" mass="34270" checksum="C1DA623AE51CFD4A" modified="2016-01-20" version="1">MLLSELEVVRVERVTPSFVRIELGGDELAEFGTPGPVLDQRIKIVFPNAAGELPSFADADESWWTTWMEIPEDQRGSMRTYTVRDVVGTGTDTRLVVDIVVHETDHRGADDPLDGAGNTWALQARAGQRLVVMAPRRGHEFGGIEWSPGNASRLLLVGDETAAPAIRGVLRDLPADARGAAFLEVPLDADVLDDVAAPPGVQLTWIPRNGGARGEELHAAVLAHLTGSAHTEAITVSDDEIDPDLWETPVYSSSGEQVAEATAVPTEGTPYAGLYAWIAGESKVVTGLRRKLVNDLGLDRKQVAFMGYWREGVSMRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9H0</accession>
    <name>A0A0Q8V9H0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5 family acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07895</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895421.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53989">
        <property type="protein sequence ID" value="KRC53989"/>
        <property type="gene ID" value="ASE19_07895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1497607at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="21"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="17135" checksum="113914F7D6F651D0" modified="2016-01-20" version="1">MTESAAGVVTARLQLVLWDAATVAAIRAGERLPGWHEEFPREDDRGAASLWHDGDPWGPRSIVSLKQRLVIGSIGFFGPPSPAADEVPEVEVGYGLVAPARGYGLATEALGALLERADAAGVRVRASISPDNAASLRVVAKAGFTGLRGANEDGEMVLVRPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9K8</accession>
    <name>A0A0Q8V9K8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 2">Hypoxanthine phosphoribosyltransferase</fullName>
            <ecNumber evidence="1 2">2.4.2.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_08070</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>diphosphate + IMP = 5-phospho-alpha-D-ribose 1-diphosphate + hypoxanthine</text>
            <dbReference type="Rhea" id="RHEA:17973"/>
            <dbReference type="ChEBI" id="CHEBI:17368"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="EC" id="2.4.2.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Purine metabolism; IMP biosynthesis via salvage pathway; IMP from hypoxanthine: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the purine/pyrimidine phosphoribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.8" evidence="1 2"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895453.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54021">
        <property type="protein sequence ID" value="KRC54021"/>
        <property type="gene ID" value="ASE19_08070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1819460at2"/>
    <dbReference type="UniPathway" id="UPA00591">
        <property type="reaction ID" value="UER00648"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052657">
        <property type="term" value="F:guanine phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004422">
        <property type="term" value="F:hypoxanthine phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032264">
        <property type="term" value="P:IMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006166">
        <property type="term" value="P:purine ribonucleoside salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005904">
        <property type="entry name" value="Hxn_phspho_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01203">
        <property type="entry name" value="HGPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0660">Purine salvage</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="3">
        <location>
            <begin position="18"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU364099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="183" mass="20281" checksum="BA10C386E85C03FE" modified="2016-01-20" version="1">MHADDVADDLVEVLFTEAQIQDRIKELAVEIERDYDGLDLVLVGVLRGAVMVMADLSRSLNKHVEMDWMAVSSYGSGTKSSGVVRILKDLDADITGRHVLIVDEIIDTGLTLSWLTSNLGSRGPASVEIATLLRKPEALQMPVKAKYVGWDIPNEFVVGYGLDYRERYRNLRDIGTLSPAVYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9V6</accession>
    <name>A0A0Q8V9V6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Acyl-CoA oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_08105</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895458.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54026">
        <property type="protein sequence ID" value="KRC54026"/>
        <property type="gene ID" value="ASE19_08105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003997">
        <property type="term" value="F:acyl-CoA oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006635">
        <property type="term" value="P:fatty acid beta-oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012258">
        <property type="entry name" value="Acyl-CoA_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002655">
        <property type="entry name" value="Acyl-CoA_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10909">
        <property type="entry name" value="PTHR10909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01756">
        <property type="entry name" value="ACOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000168">
        <property type="entry name" value="Acyl-CoA_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0274">FAD</keyword>
    <keyword evidence="4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="9">
        <location>
            <begin position="30"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="8">
        <location>
            <begin position="144"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="287"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="domain" description="ACOX" evidence="7">
        <location>
            <begin position="509"/>
            <end position="649"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC54026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="657" mass="70813" checksum="55AC4EE5FE4D96D2" modified="2016-01-20" version="1">MAEESTTSAPPALSVDVAALTELLDGRYADVRRTVRDLLPSYASVLEDAETMPKEEFRERVREVVLEIASTGAVGMGFPKEYGGGGDIGASIAAFETLAYGDLSVLVKVGVQFGLFGGAILQLGTKRHHDAYLADLIAGRLLGCFAMTETGHGSNVQALGTVATYDPDAGEFVITTTTPSAGKDYIGNAAKHARVAVVFAQLEVAGEGHGVHALVVPLRDESGVTLPGVRIEDDGQKMGLNGVDNGRIWFDGVRVPRESLLNRFADVTEGGEYVSDIESSGRRFFTMLGTLVQGRVSVGAAGVSASKVALTIAVRYALQRRQFDTGADDGAEQLLLDYGLHQRRLLPRLARTYALHFAQEVLASRLHDVFSGITPDDESRQLLESRAAGTKALSTWLATDVVQECREACGGAGYLAVNRFAALKADTDVFTTFEGDNHVLLQLVGKGLLTNFSSDFSDLDQLGMVRFVAGVAVETVLERTRAHRLLQSIRDALPGGGDSWDTDSGLRDPQYHLAMYRFREEHRIGGVARRLKRGIDSGMNPGEVFSRVQDHVIAAARAHVERIVLEAFVEKVAAMEDGDLKLTLNAVCDLHALAGIEADAAWFIEHDRLSTQRSKAITREVGDLCRRIRPVARELVDGFAVPEALLRAPALISGESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA81</accession>
    <name>A0A0Q8VA81_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15085</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51409">
        <property type="protein sequence ID" value="KRC51409"/>
        <property type="gene ID" value="ASE19_15085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1926702at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="125" mass="13604" checksum="2B31BAB92DECA791" modified="2016-01-20" version="1">MPPLTDQAALERTWCTLMGRLGFATPQLWLLFVDGERPRHLLEVEDVPLHPTSADRAGLAGMLEHLLDERRSCAFLYARPGGPGRTPGDLAWARALSGVCARWPVHLANDVELRVAAPDDLAAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBC3</accession>
    <name>A0A0Q8VBC3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14885</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896445.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51378">
        <property type="protein sequence ID" value="KRC51378"/>
        <property type="gene ID" value="ASE19_14885"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="309" mass="33191" checksum="2B092DC9CBEA3D11" modified="2016-01-20" version="1">MYTGYGLRVDSELPLPDLGAELSGPAAAGPADVVIRCGTVAAPGPGAAVLPLGMWADGDRIGVDVPDVGRYCAEGGHRITVDPLPGVAPDVVRLFLLGTAFGALMIQRGHLVLHGNAFRVGDACAVVLGHSGAGKSTLAAEMHRRGHDVLSDDVVPIDDAGRALPGWPRLKLWQDALDRIGLHDHDLRPVRDEYDKYHLPLDDRPPLPPLPVRWLYVLDRHDGPLQLTPIDGAAVFTTLHEHSYRNELLVGEHRRTHLARSAALAATTWLSRVDRPRGIDSVVASADAILDDIRLGPTTSRETHHAATT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBN1</accession>
    <name>A0A0Q8VBN1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14960</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896538.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51474">
        <property type="protein sequence ID" value="KRC51474"/>
        <property type="gene ID" value="ASE19_14960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047542at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="19844" checksum="1DAB8BF33455496A" modified="2016-01-20" version="1">MRADAVRNRERIADIARQLFREKGYDAVSMDEVAKTAGVGIGTLYRHFPTKEALYDAAIQAWVETVNAAAEKSLASEGAPRDRLLAWFEAYVEFLTRHKGAAWRITSALGDDDSPFAAKCRTYLNANQRVIDTLASEGALRADVDAMQLCRLVGGVAAVVDNSELAPDAARSMLAVVADGVLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC11</accession>
    <name>A0A0Q8VC11_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04605</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894320.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54762">
        <property type="protein sequence ID" value="KRC54762"/>
        <property type="gene ID" value="ASE19_04605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1975208at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021456">
        <property type="entry name" value="DUF3107"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11305">
        <property type="entry name" value="DUF3107"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="75" mass="7837" checksum="B42320C95D87D15A" modified="2016-01-20" version="1">MTVEVKIGVQQTARELVIETENTSEGVATLVSEALASDGVLTLTDTKGKVTVVPVAKLAYVEIGRSTSGQVGFRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCJ8</accession>
    <name>A0A0Q8VCJ8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_05380</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54888">
        <property type="protein sequence ID" value="KRC54888"/>
        <property type="gene ID" value="ASE19_05380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="389"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="464"/>
            <end position="485"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="491"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="530"/>
            <end position="556"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="9">
        <location>
            <begin position="4"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="312"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="315"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="32"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC54888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="565" mass="59699" checksum="B9FF9B632342D36E" modified="2016-01-20" version="1">MGDYTLLTRLGEGGMGIVHLARGSDGRRVALKVLRPQIVGDAEARGRLAREVSSLTRIRSPWVAEMLAADPWADVPYVVTRYVPGLSLHEHVSTEGPVEGPDLHWLAGCLAEGLAAVHAVGVLHRDVKPGNVLMEGRTPILIDFGLARVADDVRLTQTGWLLGTPGYLAPEILYGDEATPAADVHAWAATVAYAATGRAPYGRGPAMAIMDRTRRGQHDLSGIERPMAEVIAACLDPDPLERPLLEELLTWLRPLSTRPELPQVPPPGGLFAPQVPEDDDFTLPLALAGQAGQPGPPVVPSMSPPTVVEPAVVEPAGATPPPPPPPPPSIPVVSPLPGPTLREHPEPTVPQPDAMQRIEQEWDQAHGFDPDDPFAAQPQAPLPERLRRWAAIGAGAIALGAGFAVAPWVATLVVVLAVWLLRAGSLATSAVAQRRTVRGAKWYDGLRWAVTSPWHLLRATTGTLVLVTWSAGLGIAAGLICYALALDVPSTLMACGATLGVALWSGPGGSRFRSPVARVLYPACRQTLPWLFTCAGLLAVAAVLGVLVAGRGVAWVPWTSGPFGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCQ6</accession>
    <name>A0A0Q8VCQ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09225</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895145.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53593">
        <property type="protein sequence ID" value="KRC53593"/>
        <property type="gene ID" value="ASE19_09225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="816674at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002397">
        <property type="entry name" value="Cyt_P450_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00359">
        <property type="entry name" value="BP450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="433" mass="49093" checksum="582157CBB82B2AEE" modified="2016-01-20" version="1">MPSNAQNGWREAVDKPPYVPLEDVDLVDLDRFAGPEAWGMLDTLRKESPVHWQRETDGGSGFWAVTRHADICEVDKDPETYTSTGFVNLEEVDEDLREARRSILEMDGLRHRALRKLISREFSRPNLMRNYEALLRDITRTTVDAALAKGEFDFVEDVSADFPIQVLARLLDVPQERTGQLIDWGNEIIGFSDPEHAKILISDAASEQYKHLPFRSPVSQEVFDYGRELAAIRKGGDGTDLVSQLVNKIPEDGQAMSASEYDSYFLLLVVAGNETTRHTITHSMLALLEHPEQLAKLQADPSLIPDAVEEFLRWASPVYHFRRTATRDVELGGQTIKEGEKVVMWFASGNRDEDVFDDPYAFDVTRRDIDHVTFGKGSPHLCMGNNLARMEIRLMFEELIPRLASIELNGEVRRVRSNFVNGIKTLPVKVTTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCV0</accession>
    <name>A0A0Q8VCV0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_05550</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894163.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54918">
        <property type="protein sequence ID" value="KRC54918"/>
        <property type="gene ID" value="ASE19_05550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1833499at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="309" mass="32051" checksum="276F4E45A3B829E3" modified="2016-01-20" version="1">MINVESLTKSYGSFTAVDNVSFTAAPGRVTGFLGPNGAGKSTTMRVMVGLTAPGSGEVRVLGRRFRDLPDPGREVGVLLDASAQHAGRTGREILTIAALTMGLPRTRVDEMLERVSLTPDEASRRVRNYSLGMRQRLGIGTALLGDPEVLILDEPANGLDPAGIRWMRDLLREFADQGGTVLLSSHLLHEIEVIADDIVVIGNGRIVAQGTKDELLAGAGTLVRAGDGTSLASALTAAGITARPTSGGAVLAEADLTRVGQAAFAAGIAVTELRAADGAGLEEMFLALTAESQRESVSHTTPSTEGAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD25</accession>
    <name>A0A0Q8VD25_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytosine deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06190</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894438.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55028">
        <property type="protein sequence ID" value="KRC55028"/>
        <property type="gene ID" value="ASE19_06190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1890883at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="156" mass="16810" checksum="21FCFC5587B266DC" modified="2016-01-20" version="1">MNDDNVWLAEAVDLATANVADGGGPFGAVIVRDGVRLATGQNRVTRDLDPTAHAEVVTIRAACAEVGDFSLAGCTLYTSCEPCPLCLSAALWARIDRVVYAADRDDAARGGFDDREFYELFSTPRSEWAMAVANVRLPSAPAPFDAWLAHEDRTAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD31</accession>
    <name>A0A0Q8VD31_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05935</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894092.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54982">
        <property type="protein sequence ID" value="KRC54982"/>
        <property type="gene ID" value="ASE19_05935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="721431at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="1">
        <location>
            <begin position="28"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="304" mass="31426" checksum="F9DD0B07AA1E394E" modified="2016-01-20" version="1">MNATTFDFTSAGVRCAATHFAGQDGAPVVVLAHGLAGTQDAGMFPFAEAFAAAGLHAVTFDYRGFGASDGSPRQVVSLAGQVADLHAAVDAAKKRPGVDPTRVVLWGISLGGGHVVSVAAERPDVAAVVSVVPMVDGLAAARLATKHHAPTQLLASTGRGLASAVRRKAGRGPAMIPVVARPGEPGALTLEGAYEDYLAIAGPTWRNEIAADVVLELGTRAPAKAAATLEVPWLVQVADFDRSAPLQAAMKAAFSGRAEVRHYPGDHFDLFAGKPFHEPAVEHAVHFLLRHVTVPAPELEPANG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD50</accession>
    <name>A0A0Q8VD50_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05835</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894392.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55150">
        <property type="protein sequence ID" value="KRC55150"/>
        <property type="gene ID" value="ASE19_05835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1812435at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="231" mass="25625" checksum="3EEE2C4D460F2C81" modified="2016-01-20" version="1">MTATIDFCGERYRLNEGALVVMGREGDIVIDDNPYLHRRFLEFSLADDLLWIANVGTAITATIADQHGLVQSWLAPGARVPLVFPQTVIWFTAGPTTYEFDVFNHEPKFVQVADVREIDGQTTLGRVSLTPDQTLLLVALAEDILRRDQRGAGAIPPSRAAAERLGWTMTRFNRKIDNVCEKFTKLGVRGLHGSADRTASNRRIRLVEYVLAARIITAEDLSMLDGLPSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDU3</accession>
    <name>A0A0Q8VDU3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Poly(3-hydroxyalkanoate) depolymerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10665</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894797.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52864">
        <property type="protein sequence ID" value="KRC52864"/>
        <property type="gene ID" value="ASE19_10665"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011942">
        <property type="entry name" value="PHA_depoly_arom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02240">
        <property type="entry name" value="PHA_depoly_arom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="30"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="272" mass="29580" checksum="174E0274E0EA3BAF" modified="2016-01-20" version="1">MRTPALELRHVTVLGHQVRAAVRPGTEPGPPLLLCNGIGASLDLLQPFVDALDPRIGVVRFDVPGVGGSPDPKVPYNFALLTVGIGRMMTQLGFDQYDVLGISWGGGLAQQIAFQQPRRCRRLVLVSTATGSLMVPAPPRVLRKMVTPQRYRDAEYAVQVAAELYGGQMRDRPDDVRRLMHAHSRVGSRRGYLLQLLAGAGWSSLPALPLIRQPTLVLAGDDDPIIPLVNARIMTRLLPHATLHVYPDGHLGLVTSADTLAPLIADFLRPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF65</accession>
    <name>A0A0Q8VF65_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09015</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895611.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54179">
        <property type="protein sequence ID" value="KRC54179"/>
        <property type="gene ID" value="ASE19_09015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2187172at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="113" mass="12362" checksum="83325243B1890ED8" modified="2016-01-20" version="1">MDLFTLVTDALEESEPDDRIWLDAAIAATAGADERGRSEMRDVLTTVAAEYRLHRRETSAIRALAKDLPELTSAGDLRFGPDELDQLADVVRSLLCLQRAYVDAVEALLGTAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFA5</accession>
    <name>A0A0Q8VFA5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08260</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54211">
        <property type="protein sequence ID" value="KRC54211"/>
        <property type="gene ID" value="ASE19_08260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025723">
        <property type="entry name" value="Anion-transp_ATPase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016300">
        <property type="entry name" value="ATPase_ArsA/GET3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10803">
        <property type="entry name" value="PTHR10803"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02374">
        <property type="entry name" value="ArsA_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ArsA_ATPase" evidence="1">
        <location>
            <begin position="27"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="389" mass="41487" checksum="BF577228EC125077" modified="2016-01-20" version="1">MGPASPTSRRAGALDVDALIDDPATGIIVCCGSGGVGKTTTSAALALRAAERGRKVVVLTIDPARRLAQSMGIEALDNTPRPVTGVRGEGHLDAMMLDMKRTFDEVVLSQASPEKARQILANPFYIALSSSFAGTQEYMAMEKLGQIHRDAREAGTYDLIVVDTPPSRSALDFLDAPERLSSFLDGRFVRLLMAPAKGPAKLMSAGFNLITNALTRILGAQFLKDLQTFVTALDTVFGGFRQRAQQTYSLLKADGTAFLVVAAPEPDALREAEYFVERLSEDDMPLAGLVINRASPEPAGTLSADEAMAAAERLRRAEGLDGSVGTPVAAGLLRLHADRVRMVLRERALRDRFATAHPQVETVVVPALAGDVHDLDGLRRVGDLLAAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFH2</accession>
    <name>A0A0Q8VFH2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Wyosine base formation domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_13040</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895739.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53277">
        <property type="protein sequence ID" value="KRC53277"/>
        <property type="gene ID" value="ASE19_13040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1410521at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017517">
        <property type="entry name" value="CHP03083_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017518">
        <property type="entry name" value="CHP03084"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024344">
        <property type="entry name" value="MDMPI_metal-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013917">
        <property type="entry name" value="tRNA_wybutosine-synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11716">
        <property type="entry name" value="MDMPI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08608">
        <property type="entry name" value="Wyosine_form"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03083">
        <property type="entry name" value="TIGR03083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03084">
        <property type="entry name" value="TIGR03084"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MDMPI_N" evidence="3">
        <location>
            <begin position="11"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="Wyosine_form" evidence="2">
        <location>
            <begin position="188"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="258"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="266"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="280" mass="30386" checksum="842D9413068C299B" modified="2016-01-20" version="1">MTVLDDVLDDLAAEGDQLRAAVAGLDAGGWRTPTPAEGWDIATTVAHLLWTDEVAVLAAGSLTDEGKQAWDAVVLLAIEDPTGFVDKEALRIGELPADELLARWDTARPGLVEALQAYPDGFKMPWFGPPMSPTSMATARFMETWAHSLDVYDALGTRPEVTDRIRHVAHIGVRTRNFAYANNGLEAPAEEFRVELTAPSGATWTWGPEDAPQRVTGPAYDFCRLVTQRVHRDDTDLVAVGADAEKWLTIAQAFAGPAGGGRERLDTSLVPRDHSTTEEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFJ3</accession>
    <name>A0A0Q8VFJ3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">3-hydroxyacyl-CoA dehydrogenase</fullName>
            <ecNumber evidence="2">1.1.1.35</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_13120</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>a (3S)-3-hydroxyacyl-CoA + NAD(+) = a 3-oxoacyl-CoA + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:22432"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57318"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:90726"/>
            <dbReference type="EC" id="1.1.1.35"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; fatty acid beta-oxidation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.35" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895755.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53293">
        <property type="protein sequence ID" value="KRC53293"/>
        <property type="gene ID" value="ASE19_13120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="977512at2"/>
    <dbReference type="UniPathway" id="UPA00659"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003857">
        <property type="term" value="F:3-hydroxyacyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006635">
        <property type="term" value="P:fatty acid beta-oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006176">
        <property type="entry name" value="3-OHacyl-CoA_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006108">
        <property type="entry name" value="3HC_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00725">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02737">
        <property type="entry name" value="3HCDH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="4" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3HCDH_N" evidence="9">
        <location>
            <begin position="326"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="domain" description="3HCDH" evidence="8">
        <location>
            <begin position="509"/>
            <end position="604"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="729" mass="77353" checksum="18A08F2BF02B5B97" modified="2016-01-20" version="1">MSTDTQTAVRYDRDADGIVTLTLDDPNQSANTMNELYRESMAAAVERLYAEQDDITGVIITSAKKTFFAGGDLKLMVQTTKENAGDVFAQCEGIKQALRKLELFPKPVVSAINGAALGGGYEITLATQHRILVNDPKIKVGLPEATLGLLPGGGGVTRAVRKWGLQTALMDVLLQGTQFNPETALKKGVVDELVATQDELVPAAKAWIKANPDAALSPWDAPGYKMPGGSPKSPALAGFLPAFPALLRKQLKGADYPAPRAILSAAVEGALVDFDTASRIESRYLANLVVNQSSKNMIQAFFFDLQAINSGSLRPQGIEPYKAKKAVVLGAGMMGAGIAYVLAKSGVEVVLKDISVEAAEKGKSYSEGLLDKAISRGKSTDEKKAELLGRITATADPAAAAGADLVIEAVFEDPALKAKVFAEILPHLAPDALLCSNTSTLPITELAAGLENDADRPRFVGLHFFSPVDKMPLVEIIAGKETSDEALAKAYDVVQLIRKTPIVVNDSRGFYTSRVIGFMVNEGMAMLAEGVAPYSIERATTSAGYPAPVLQLSDELNLELMAKIAKATTDANPDMPVHPGQAVVGKMLEAGRAGRLRGAGFYDYEDGKRGSIWAGLAELFPVAEEQPPIQDIRDRMLFAEALETAKTFEEGVITSAAAANIGSIMGIGFPPNTGGAAQFMTGYENKATGEIGLDAFIARADELAAKYGERFQPTPWLRELAASGKGFPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFM1</accession>
    <name>A0A0Q8VFM1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10230</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894719.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52786">
        <property type="protein sequence ID" value="KRC52786"/>
        <property type="gene ID" value="ASE19_10230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="672126at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="107"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="158"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="188"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="212"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="237"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="381"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="482"/>
            <end position="500"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="501" mass="53939" checksum="F97E53E6195C66BB" modified="2016-01-20" version="1">MTRLFAAAQALQTRLPRPEILLGWLVVAHVVLKLLIYPMVMHAPPVGDESAYLNGGRAMSNLLRDTFSFTSPDSAELERNVVASGWFMPGMPVLTAPVYLLFPDAPIWLVRGYIGLVTLILFMVVLRSVTRRIGPGWACVLAVVPGLIPSYVVFTYGAWGDLCAGLVLVLLLVHLVEMFRGLRRGDAPSLKEGLVLGLLAIAVLYLRSSTAILLAGLGAATLLTAVLLLRGRVRVRALGSAVLAGVVFVLLLAPWSYFASDALGGRVITTTTVPTVMANTFGERSEICFGRCDPDSTQWFRPLRYAREVGRSTDTSEVEVLKVMSDYALRDLSKAHYLDQVVHNLGAYALQPNNFTGYLAPPEGRGLLGRTAETTADTITWLMYAPLILIGALSLLFQVCRSLEARVLDILTKLSLGALLVQPFVHIAGARYWTTAGPVFAIAAFSLLRERQLAAGGAPPPPDGVATATDATIVRWLGRVQVLLSVATGAVVVVLLSAVVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH87</accession>
    <name>A0A0Q8VH87_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03355</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892875.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56858">
        <property type="protein sequence ID" value="KRC56858"/>
        <property type="gene ID" value="ASE19_03355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1392898at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="24031" checksum="887A90B577ABD552" modified="2016-01-20" version="1">MSEELIDYAQWGERFFTTAVTVERVLNGVNVLSGRPIDVGPLGVGPGRIAKVTAQGRIGTATGQRVGASPVSFHVDLPVTLKFSIDLGMDKQNFDADITVPLVITAHGRADLAIALEVTPPETNQVVVRLKAQGLRASLTSKAANVEGELRRFVAKYVAKELDKPYVRDATVIDVGAAIEKAAAGLGPREESPMADELTDDLPAAMEAELEHTAQLFIDSSEDPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHA8</accession>
    <name>A0A0Q8VHA8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase S16</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892694.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56676">
        <property type="protein sequence ID" value="KRC56676"/>
        <property type="gene ID" value="ASE19_02285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1474822at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003111">
        <property type="entry name" value="Lon_prtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046336">
        <property type="entry name" value="Lon_prtase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02190">
        <property type="entry name" value="LON_substr_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00464">
        <property type="entry name" value="LON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51787">
        <property type="entry name" value="LON_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lon N-terminal" evidence="1">
        <location>
            <begin position="5"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="221" mass="24777" checksum="8AA392E6D5ECBA20" modified="2016-01-20" version="1">MPDELPMFPLNAVLYPGVSLPLRVFEDRYRALVHHLLRIEDPAQRLFGSVAIREGYEVGDHGAQSLFRIGVRLQLTDVESHPDGTFDIVAVGRDRIQLDRLRTTEAYPLGEVRTLPEPRTDVPAEVVERARSTFTAYRAVVREISADPLEGELPEDPGYLSWTLAACSPLPLGERQELLEAADPTDRLMLVTDLLRAELRAMNVITSLPATEVARTRWSPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHB6</accession>
    <name>A0A0Q8VHB6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Diacylglycerol O-acyltransferase</fullName>
            <ecNumber evidence="5 11">2.3.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_13325</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>a 1,2-diacyl-sn-glycerol + an acyl-CoA = a triacyl-sn-glycerol + CoA</text>
            <dbReference type="Rhea" id="RHEA:10868"/>
            <dbReference type="ChEBI" id="CHEBI:17815"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="ChEBI" id="CHEBI:64615"/>
            <dbReference type="EC" id="2.3.1.20"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Glycerolipid metabolism; triacylglycerol biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the long-chain O-acyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.20" evidence="5 11"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53330">
        <property type="protein sequence ID" value="KRC53330"/>
        <property type="gene ID" value="ASE19_13325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="279287at2"/>
    <dbReference type="UniPathway" id="UPA00282"/>
    <dbReference type="UniPathway" id="UPA00868">
        <property type="reaction ID" value="UER00840"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004144">
        <property type="term" value="F:diacylglycerol O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019432">
        <property type="term" value="P:triglyceride biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014292">
        <property type="entry name" value="Acyl_transf_WS/DGAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045034">
        <property type="entry name" value="O-acyltransferase_WSD1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009721">
        <property type="entry name" value="O-acyltransferase_WSD1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004255">
        <property type="entry name" value="O-acyltransferase_WSD1_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31650">
        <property type="entry name" value="PTHR31650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03007">
        <property type="entry name" value="WES_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06974">
        <property type="entry name" value="WS_DGAT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02946">
        <property type="entry name" value="acyl_WS_DGAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8 11" id="KW-0319">Glycerol metabolism</keyword>
    <keyword evidence="6 11" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="9 11" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="WES_acyltransf" evidence="12">
        <location>
            <begin position="17"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="domain" description="WS_DGAT_C" evidence="13">
        <location>
            <begin position="320"/>
            <end position="463"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU361241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF03007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF06974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC53330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="470" mass="51008" checksum="174A52B48DBFB70D" modified="2016-01-20" version="1">MPDWTLTKAAWLMAEHLSPTDASMLAIEDPDHGSHIQIVYVFEGTPPTQAELRETVEQRLLGAPRFRQRVARVPFNLGRPAWVEDERFDLDHHLRRTALPAPGGEEELRALSNRLLQQSLDPGRALWEMWLVEGLAEDRFAVIHRVHHCMVDGVATQDISGMMFSPTPEEDRPPVEPWTPSGGPSRAGLLVSGLSDLAVHSGRALSGLARASRTPSALWQGVVDSARTVGTLTGVSGAVPATIVNRPGGPRRRTDWVRVPMDDLRMTKNAFGTTLNNVVLAASTAALRRYLERQGEPLADGMRAMVPVSVRLDPEKGALGNQVSAIYPELPVGEPDPARRVAMIAAEVERLRAGQGVALERLMNIGGFAPPTIMEQVQRLLLINPGGHNLVISNVPGPGTPYYLRGRKLVEVLACGSTMPRHGLNLVMISYVGTLYVAICSDPDVVPDAAGFAADLEASFAELRDLAPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHF4</accession>
    <name>A0A0Q8VHF4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05385</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894192.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54889">
        <property type="protein sequence ID" value="KRC54889"/>
        <property type="gene ID" value="ASE19_05385"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="119" mass="11598" checksum="B3B02BAADD193426" modified="2016-01-20" version="1">MTTQNLILSARLLAVLVVGSFAAVIALPRSGDRVTAAVTAAVAVVLAVAVAGAVRRGGARPAAAVVTAAGGVAVAGAELYLLSLSSDGADIPLAGVGILFLGLIAVFVGALTLARPRVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHH2</accession>
    <name>A0A0Q8VHH2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ResIII domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02210</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892680.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56662">
        <property type="protein sequence ID" value="KRC56662"/>
        <property type="gene ID" value="ASE19_02210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="13585at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ResIII" evidence="1">
        <location>
            <begin position="3"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="844" mass="92194" checksum="01CF02F531718CF8" modified="2016-01-20" version="1">MRFGLKDYQAEAVASVLAGLGNARAMVDLHMKTSLALTAPTGAGKTVMAAAIIEALFFGSDDLDVLPDPRATVLWFTSDPSLNEQTRHRIQQASDRLTPNRLVVVPSTFAEERLEPGTVYFLNSQKLSRNSLLVRGGGAGDEGEMLAAPDMRARTFWEVLRNTIEHDGTTLYVVLDEAHIGMNTSKRDLGEKSTIVRALVNGEAGAPAVPIVLGISATIDRFRGAMEQADGRTTLPDVSVDPARVQESGLLKDNVLLSFPAEIGAFDTVLLRHAVQRTREASELWAAYHAEQQDHGAAVQPLLVVQVPNKPSDELLADAVTTILDEWPELSSANVANVFGDGTPLSVGGHEIEYVAPQDVAERTHVRVLLAKDAISTGWDCPRAEVLVSFRPAQDLTHITQLLGRMVRTPLARRIAGDDRLNAVECFLPLFNRANAQQVARQIMGAGSPGPVISPATSAFRRNSDVDESVWEAFDRLPSQTVPRKGSKPVSRFTALAAALARDGIRPGAYDSAIKSLVDFLRGKAVQYATRVEEQIADLQEMTGETIVVGMGPESTTVRTSFSLRVDDRAVDQEYKVARRTLSPQLAAAYAEVLEDEYDDGYFEAHLRTAALARLSDVVEQLGAEADRMFSGWDAEHRVAIKDLPDERRAVYEELRSLAGYPVPADVERPLVRMEVTEDAAGKVLATHPRHLLSDADGRFPTGSLLGWERAVLDAEIGRSVAWYRNPSRASADAIAIAYLDAQREWRRLCPDFIFFQEVRGEIRSSIVDPHGTHLGDALPKLRGLARYAEDFADDLHRVEAVAEVDGQLRVLDLTLPHVRQAVSDADSVKDLYLSSAGADYVTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHH3</accession>
    <name>A0A0Q8VHH3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Crotonyl-CoA reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03075</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892831.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56812">
        <property type="protein sequence ID" value="KRC56812"/>
        <property type="gene ID" value="ASE19_03075"/>
    </dbReference>
    <dbReference type="OrthoDB" id="884088at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043880">
        <property type="term" value="F:crotonyl-CoA reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010085">
        <property type="entry name" value="Crot_CoA_red"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01751">
        <property type="entry name" value="crot-CoA-red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="64"/>
            <end position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="461" mass="50982" checksum="5469CAA84AD584C0" modified="2016-01-20" version="1">MPSEHVPESIPRETTTVQHILDAIQAEASAEDFANLELPQSYRAVTVHKDEVDMFEGIDSRDKDPRKSLHVDEVPMPELGPGEAIVAVMASAINYNTVWTSIFEPVSTFGFLERYGRESELAKRHDLPYHIVGSDLSGVVLAVGPGVTRWKAGDRVVAHCLSVELEAPDGHNDTMLDTSQRIWGFETNFGGLADVAMVKANQLMPKPEHLTWEEAASPGLVNCTAYRQLVSSNGGNMKQGDNVLIWGASGGLGGFATQYALNGGANPICVVSNEEKAQIVRNMGAEMVINRSELAPRFWNEEGTQQNPKEWQRFGKAIRELTGGEDIDIVFEHPGRETFGASVYVTRKGGTITTCASTTGYMHEYDNRYLWMNLKKIISSHFANYRESWEANRLIAQGKIHPTLSRTYKLEDTGQAALDVHHNLHQGKVGVLCLAPEEGLGVKNDEMRAQHLDKINLFRGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHJ7</accession>
    <name>A0A0Q8VHJ7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 17">Homoserine dehydrogenase</fullName>
            <ecNumber evidence="6 17">1.1.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">ASE19_03280</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">Root79</strain>
        </source>
    </reference>
    <reference evidence="20 21" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-homoserine + NAD(+) = H(+) + L-aspartate 4-semialdehyde + NADH</text>
            <dbReference type="Rhea" id="RHEA:15757"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57476"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="1.1.1.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 17">
            <text>L-homoserine + NADP(+) = H(+) + L-aspartate 4-semialdehyde + NADPH</text>
            <dbReference type="Rhea" id="RHEA:15761"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57476"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="1.1.1.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 17">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 3/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 17">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 3/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 18">Belongs to the homoserine dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.3" evidence="6 17"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892861.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56844">
        <property type="protein sequence ID" value="KRC56844"/>
        <property type="gene ID" value="ASE19_03280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1464088at2"/>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00063"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004412">
        <property type="term" value="F:homoserine dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005106">
        <property type="entry name" value="Asp/hSer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016204">
        <property type="entry name" value="HDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001342">
        <property type="entry name" value="HDH_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019811">
        <property type="entry name" value="HDH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00742">
        <property type="entry name" value="Homoserine_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03447">
        <property type="entry name" value="NAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000098">
        <property type="entry name" value="Homoser_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01042">
        <property type="entry name" value="HOMOSER_DHGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 17" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="14 17" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="9 17" id="KW-0412">Isoleucine biosynthesis</keyword>
    <keyword evidence="13 17" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="11 16 17" id="KW-0521">NADP</keyword>
    <keyword evidence="12 17" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 17" id="KW-0791">Threonine biosynthesis</keyword>
    <feature type="domain" description="ACT" evidence="19">
        <location>
            <begin position="357"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="15">
        <location>
            <position position="206"/>
        </location>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <begin position="10"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00006753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRSR" id="PIRSR000098-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR000098-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="RuleBase" id="RU000579"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="RuleBase" id="RU004171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="KRC56844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="436" mass="45222" checksum="E7A2212C47281027" modified="2016-01-20" version="1">MNSPLKVAVLGCGSVGSQVVRLLGEQADDLAARVGAPVELAGVAVRRLDAPREVDVPAHLLTTDAAALVAREDVDVVIEVIGGIEPARSLILSALENGASVVTANKALLAEDGPTLFEAAEKAGRDLYYEAAVAGAIPIVRPLRESLAGDKVTRVLGIVNGTTNFILDKMDTLGSGFADALEEAQALGYAEADPTADVEGFDAAAKAAILASLAFHSRVTAADVHREGITDVTAADVRSAREMGSVVKLLAIAELVPTSDPADDPGVSVRVHPAMIPRSHPLASVREAYNAVFVESEAAGQLMFYGPGAGGSPTASAVLGDLVTVARNHRQGTRGVGESAYADRAVLPMGETRTRYHVAIDVDDRAGVLAAVAYAFAENGVSIQTVRQEGRGNDAQLVVVSHEATDAALAATVENLRGMEIVREVTSVMRVEGTEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHS5</accession>
    <name>A0A0Q8VHS5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07605</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895368.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53937">
        <property type="protein sequence ID" value="KRC53937"/>
        <property type="gene ID" value="ASE19_07605"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="87" mass="9134" checksum="EBCBE2AC79A55AE8" modified="2016-01-20" version="1">MTALADDRAVQLAALALQSARTAPEPGDVAAALTDAGWLAHPHVLADVVEVLAHECRRQRAVLLEVAHEIRTVVADVTSRDEGSSSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHT5</accession>
    <name>A0A0Q8VHT5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_03360</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917930.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56859">
        <property type="protein sequence ID" value="KRC56859"/>
        <property type="gene ID" value="ASE19_03360"/>
    </dbReference>
    <dbReference type="OrthoDB" id="978501at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010451">
        <property type="entry name" value="Acetoacetate_decarboxylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023375">
        <property type="entry name" value="ADC_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06314">
        <property type="entry name" value="ADC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160104">
        <property type="entry name" value="SSF160104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0704">Schiff base</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="201" mass="22214" checksum="A8C29588B5302BA4" modified="2016-01-20" version="1">MKPYPPAPWHMHGSLWLSAFKLREDVDERHPAGTYGVALVSYEDPSPLTYHELLVARTTTNRAGKGAVTITDIWVDSAASQAGGRELWAIPKELCDFDMESSFRGPVTSTDWTATIDRRPIVSAQFTDVSRAAIRMPFTGLVEQPGIAEHPEIADVVMKGNAKAFPCRSRWSFASDGPLAFLQGARRLGSFRMAGFRLAFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI37</accession>
    <name>A0A0Q8VI37_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10615</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894788.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52855">
        <property type="protein sequence ID" value="KRC52855"/>
        <property type="gene ID" value="ASE19_10615"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1209997at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="28467" checksum="EAF36B2E1B5258FD" modified="2016-01-20" version="1">MVDLLTDKVIVLSGVGPGLGRSLGEEAAKMGADLVLVSRTPKRLEKMAEVVRSYGRRALVVPTDITDEDQRKALVEATLAEFGRVDCLINNAFGIPPMDPISTLSLEGLRSANETNVFAPLRLSALFADSLAQSEDKVGGSVIMVNSCVIYSSQPEYSGYKLSKGTLEHLAQSLATELGPRGIRVNSVAPSYIYEDVNKAYFDWIAQESGRTHEEVYAEKADPTDLKRLATPDEVARAALFLASDLASAVTGQMLNVDCGEFHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI59</accession>
    <name>A0A0Q8VI59_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SH3b domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05725</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894129.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54947">
        <property type="protein sequence ID" value="KRC54947"/>
        <property type="gene ID" value="ASE19_05725"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003646">
        <property type="entry name" value="SH3-like_bac-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08239">
        <property type="entry name" value="SH3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360061" description="SH3b domain-containing protein" evidence="1">
        <location>
            <begin position="29"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="domain" description="SH3b" evidence="2">
        <location>
            <begin position="128"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="191" mass="19697" checksum="052C6D7241141358" modified="2016-01-20" version="1">MKRLPHTLAALAAVALTAATVTGPAASAAPAATTQAAAPTYTGRVVSATGLAQRVAPSTHVSTTSTAFRRGAVLILDCQLNGTAVGGNQRWYKVHGRDAWVSARYVANVGAAPVACTAGDWAYEVRVGTNVRQGPSTLDTKVGSFAAGTEVGTRWRTARGQAVNGNRNWVAVETPSGNRGWVSVTNLRLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI84</accession>
    <name>A0A0Q8VI84_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Thioesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03485</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892896.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56879">
        <property type="protein sequence ID" value="KRC56879"/>
        <property type="gene ID" value="ASE19_03485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1895484at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025540">
        <property type="entry name" value="FlK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36934">
        <property type="entry name" value="PTHR36934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="126" mass="12958" checksum="840B4EBDC5992165" modified="2016-01-20" version="1">MGEATVRFTVTDDDTAAALGSGSLPVLGTPRLLAWCEAATCAAVAPELGDGETSVGTRIDLEHLAATAVGGTVEVTARQVYADGRLRRYAVSARAVGPDDRAGKLVGSGEVTRVVVDAERFLSRLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIF2</accession>
    <name>A0A0Q8VIF2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03920</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917932.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56959">
        <property type="protein sequence ID" value="KRC56959"/>
        <property type="gene ID" value="ASE19_03920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="525195at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="16"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="221"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="723"/>
            <end position="743"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="728"/>
            <end position="743"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="743" mass="77233" checksum="CA88CC9B2929EE86" modified="2016-01-20" version="1">MTRIRIRRRRLRDDRGALLIFAILIVTVIALVTGMVLTRGDGSLRATVALRDVARSSYAADGAAQVAINALRTGYNSGNGTNPSYFTNAPGTGCFGYDTGVPTTAKNTLYLNGLIPKVGNETQQEMSARVVCEIDSDTGEQGTAVPINGSNKPGYAIVTLGDRIAKTGGTLTAAQPLKVHGGVFANGTITGSVNLDAGDVKATGTCSAATVVAPSVKRCADAPPAPAPTSDPNYNHELGSSPPALKKPPTSCTDGLSPSTATTSDDNLAVFTEGYYDSAADMNAAMNICPVVWFKPGNYYFDFHDETCSNVCPDSVYPGITNQWSIPSGLDVLGGTPTNPTTGAILARPPSSLPAVAPNQGGLIPGNCQSPITNVNAQGVQFVFGGNSRLYLNGGSSRGARMELCATYHVDRPPIELYGLKTGNTPSSAPANGLIPSGAVTTTQPQGTWTNATAAAVSADNGLEATWTTTGSGTKNGTITVPGFAPATAVPAGAILTGAKLRVKHKDVGNQSTAAFQVNGAPTATGAFTVPLRNTTSGVDTVDLATNATEFQNLQRQVHDYGFSGAKVTYAVKVTSNGNNAVTLDSLSLDLTYYVPVLRGEQGTNIETGGTSTPLLWTDNSGNNKINMYLHGTTYAPYGHMDITLSNFSAEVAKFGVIVRSLRFDVNTGNPLFTGPVFEIPDDSPGFGFETTLVRLNVYVCPGASCTSGGELALKTKVMVFDSGGTPGPPNRQVTPMSWSHTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIH4</accession>
    <name>A0A0Q8VIH4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RpiR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06185</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894437.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55027">
        <property type="protein sequence ID" value="KRC55027"/>
        <property type="gene ID" value="ASE19_06185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1540164at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000281">
        <property type="entry name" value="HTH_RpiR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01418">
        <property type="entry name" value="HTH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51071">
        <property type="entry name" value="HTH_RPIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH rpiR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="268" mass="28835" checksum="25984DF84132A7D3" modified="2016-01-20" version="1">MRIDERIAAHHDELGPQERRAAATLLEHLDDLATYRAAELAELAGVSRATMSRLFRSLGFADFDQVREHLRGLRGAGEPRRVEGAPDVATLVAAEQAAIQRALEHPRLPEVAGLVALAHRVLVVGWRNSYPVALHLREQLAQARDDVGIAPVPGQAIGEELVGLGPDDVVVVVAFRRRPPHLGPFLEAARDTGAAVVLLGDPSAVAHAARATVWVECPLQSTLAFDSYAAPMALVGLLADSVLAACRRHGPARVRAITETYERLGEVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIK2</accession>
    <name>A0A0Q8VIK2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08815</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895576.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54144">
        <property type="protein sequence ID" value="KRC54144"/>
        <property type="gene ID" value="ASE19_08815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1701106at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="224" mass="25419" checksum="D8ED352965A7BBE3" modified="2016-01-20" version="1">MSDSSGPGVDTLADTVTETHDVLTTRLADAEACRPTRELPRDRMRATDPFLASTSRHVAAVNAVLGPAARRHLPDGRRRTRELARQSRRLEGALFQTKSKLYGSTFVVRRPWASIWHEVGEELDAFWTLERGLVDDLATRTSVADRDALAERLFRAERHVPTRPHPYLPHRGVTGRVARQVALRVDRFWDTAEGRMVPEPVRPHRSREGRMTQYLLADPHVEGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK11</accession>
    <name>A0A0Q8VK11_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4031 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08825</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895578.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54146">
        <property type="protein sequence ID" value="KRC54146"/>
        <property type="gene ID" value="ASE19_08825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1086845at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025109">
        <property type="entry name" value="DUF4031"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13223">
        <property type="entry name" value="DUF4031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4031" evidence="1">
        <location>
            <begin position="3"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="97" mass="10872" checksum="149F21E43EB0A983" modified="2016-01-20" version="1">MTIYVDDMQLAARVGPVEGVWSHLLSDLPGEEGQRELIAFAERLGIDPRWIQNEGTTTEHFDVREPMRQRALALGAVPISYGREVARITLAKRGRDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK74</accession>
    <name>A0A0Q8VK74_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Metal ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_23540</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the ABC-3 integral membrane protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893940.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57734">
        <property type="protein sequence ID" value="KRC57734"/>
        <property type="gene ID" value="ASE19_23540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1421296at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001626">
        <property type="entry name" value="ABC_TroCD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30477">
        <property type="entry name" value="PTHR30477"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00950">
        <property type="entry name" value="ABC-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="40"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="64"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="93"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="131"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="172"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="221"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="254"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC57734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="334" mass="34715" checksum="7B37A47FF460B57D" modified="2016-01-20" version="1">MTPVELFSLPFMQRALIAALLTGLAAPAIGTFLVQRRLALMGDGIGHVAVTGVALGLLTGTSPVWTAVVIAVLGAVLIEVIRERGQTNGDVALALLFYGGLAGGIFLSGLGGESAAALNRYLFGSLTTLSVSDVIITMVLAIAVIGLCVGLAPQLFAVAQDQEFARVAGLRVRYYNVLVAVLAAVSVTVAMRTVGLLLVSALMVVPVATAQQVTRSFRATIVAAMALGAVASVGGLVAATFASYKATVATGPTIVLLALACYVVAWPIGIWTRHRARLREPFPAGELPEHEACSEHPHAHGPGCGHLAVPHDDHVDYVHDGHRHAAHGAHYDEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKF3</accession>
    <name>A0A0Q8VKF3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_09070</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895143.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53591">
        <property type="protein sequence ID" value="KRC53591"/>
        <property type="gene ID" value="ASE19_09070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1303270at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="14"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="53"/>
            <end position="60"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="347" mass="37089" checksum="6555BA8A3C1666A1" modified="2016-01-20" version="1">MTTAHELPVPLLSVRGLSVSYAAPRKGTHLGTGAALAEADLDVRPGEIVGIVGETGSGKTTLARATVGLVAPAAGTIAFAGSDVGGLRGRARRAFRRSGQVQLVFQDPLRSLDPDLTIGEIVREPLDIAGTLSRAERQERVVESLRLVGLDPDAVLARHPRQLSGGQRQRASLARAISTRPRLLFCDEPVSALDVSNRNLVLNLLDQLRRDLDLAVVIIAHDLSSLAGIADRVAVFYRGRIVEQGPIRDVLEDPAHPYTALLTASAPSIGDEDRLRPDQLKPAPDAPAWPADLGCGFAHRCPFVHDACADQPRPAPLPHAPARQAACHVATTWRERLAPPHPHKESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKL3</accession>
    <name>A0A0Q8VKL3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_23680</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57759">
        <property type="protein sequence ID" value="KRC57759"/>
        <property type="gene ID" value="ASE19_23680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1181903at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="41"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC57759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="233" mass="24840" checksum="5C56AAA393DC9B7E" modified="2016-01-20" version="1">MSTIIELAGVRKTYRSGSVEFEALRGIDTSVRAGEYVAVIGPSGSGKSTLMNLLGCLDVPTEGCYVLAGDDTSSLDEAALAAIRNRRIGFVFQQFHLLASMTALRNVELPLVYAGVSRAERRDRAAAALAKVGLADRLDHRPGELSGGQQQRVAVARALVTEPALLLADEPTGNLDSRSTHDVLGLFDELHAAGRTIVLITHEPDVAARAERNLVIDDGLITEDRLTTGVGPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMA0</accession>
    <name>A0A0Q8VMA0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05050</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894247.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54834">
        <property type="protein sequence ID" value="KRC54834"/>
        <property type="gene ID" value="ASE19_05050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="322004at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="504" mass="55702" checksum="B7DB74F397DB5936" modified="2016-01-20" version="1">MHFPAAFTGSADVFFGDHRGWSFSAEKPGKTDVSWPKRLRPFLNGWSDVRVVTAEGKTLFANRVVFTDDDSPVTMRDQHGLPLIVDKWGLLQRPFDTRPEGLLGLLADESLRIIDVLENVCGVRAWISFGTLLGAARQGKGIGHDSDVDLCYLSEKATPAQMQRELWEIARALRAAGMRLQMRTGSFLTVQLDTPDGAGAGIDVYTTFFFDGNFYETATVRTPVARDELLPLKPMEFEGRTLPAPADHAKILEISYGPNWRVPDPSFRHQPGPEVEQRFDGWFGKFWRQRREWQAFNREGASRRPGPSAFAQDVAARLAPGTRVLDIGTGAGDDALHFAGSGFQTVAFDYALPARRAWPEVAGLSRVTLNFYDLRDVMSRGALVSRHEGEQAVYARQLLEALAPVGRDQFWALAAMALRRGGTIHLESQAWSRPSIGRRGEELGGRVWPTGPEDARRAAQAIGGVVRSEDGTAEAERTIEARSVLPPATWRMTIDIPARGGHPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN48</accession>
    <name>A0A0Q8VN48_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">AAA_23 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22650</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892615.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58868">
        <property type="protein sequence ID" value="KRC58868"/>
        <property type="gene ID" value="ASE19_22650"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038729">
        <property type="entry name" value="Rad50/SbcC_AAA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13476">
        <property type="entry name" value="AAA_23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_23" evidence="2">
        <location>
            <begin position="8"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="548"/>
            <end position="609"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="802" mass="87444" checksum="EAC68993036D53B3" modified="2016-01-20" version="1">MSDFPIRRLTVSDFRRIEGTRELPFDAPVVLIHGPNGTGKTSVLSALELALTGGIRSMERQSDRYRAHLPFFGQPYATVRADVADYLQAGSPGVPLTVNGARLEGAPALNDEAATFYSERCYLDQTSLGRLLDLYQARAGNEQTALEKFVNELLGLEKLDALRDGLSDANDLRLLKKLAVGVDEADRESKTATAQLKEQSALRGEIRKDVARARAAIRDAIAGLRPGPTDDMTDGDLLGFVRSLSDGAIRAESARAATVHQELIALGGRISALAERPTTQRIQAARVALAAATTAKEAWENTDGAKVRAWEEEAEGAGADLRSEPQIAVERAKNLALQELDNISNIRTQVETVTAQLEADRTELARLQARLTDAHEHSSALVESLAALRTVIDGNNVCPVCDRDFTGASADSLLAHIDTKLAQLTTHGQELVNLRNERDQLAARIARGDVVYAQLTARIVAPDQQSAIAQQHATLAKLTAQLSEIEVARSNGADLTRRVHDLRQSIENLESASSEEHHISSELVRYASLLNTSVSSFDSFQALSANLLERAKAEVARLTDTANQHLIAKETASRLSAALERESAVVQRVADLAEHKKQWDDRIAEARRRQGVAKEVYEAATQARTTIVHRVFTESLNDVWKAVFTRLAPNEGFIPSFGIPTATKKTFDIELETTHRDGRASGPPQMMLSAGNLNTAALSLFLALHLAVDPIVPCLVFDDPVQAMDEVHVAQFAGLIRLLAKQNGRQVVIAVHERELFDYLALELSPAYDGDELITIELGERATEEDRGITRHAWAPDPAIAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN54</accession>
    <name>A0A0Q8VN54_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="11 12">ATP synthase subunit a</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">ATP synthase F0 sector subunit a</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">F-ATPase subunit 6</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">atpB</name>
        <name evidence="13" type="ORF">ASE19_03225</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11 12">Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11 12">Cell membrane</location>
            <topology evidence="11 12">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11 12">Belongs to the ATPase A chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57049">
        <property type="protein sequence ID" value="KRC57049"/>
        <property type="gene ID" value="ASE19_03225"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01393">
        <property type="entry name" value="ATP_synth_a_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000568">
        <property type="entry name" value="ATP_synth_F0_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045083">
        <property type="entry name" value="ATP_synth_F0_asu_bact/mt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035908">
        <property type="entry name" value="F0_ATP_A_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11410">
        <property type="entry name" value="PTHR11410"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00119">
        <property type="entry name" value="ATP-synt_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00123">
        <property type="entry name" value="ATPASEA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81336">
        <property type="entry name" value="SSF81336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01131">
        <property type="entry name" value="ATP_synt_6_or_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 11 12" id="KW-0138">CF(0)</keyword>
    <keyword evidence="6 11 12" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="8 11 12" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 11 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="35"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="91"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="123"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="187"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="221"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC57049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="28302" checksum="80ACC2E279B33536" modified="2016-01-20" version="1">MNAASATVRAEEFHAPGPSLFDLPGIAGSEVTKPMVQLFLAAIVVFAFFYAASRKRALVPGKLQFAGEGAYGFVRNSVARDIIGGHDFQKFVPYLVTVFFFILVNNLFASVPFIQFPTFSRAGMAYALAGLSWLVYNGVGVAKHGLLGYLKLQSVPSGVSPVMYPLLVPLEFFSNILVRPVTLALRLFCNMFAGHILLALFATGGLYLIEHVGGIGYVAGPLAWVLAILVSFLEILVQFLQAYVFVLLNAMYIQGALADEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN92</accession>
    <name>A0A0Q8VN92_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Acetylglutamate kinase</fullName>
            <ecNumber evidence="7">2.7.2.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">N-acetyl-L-glutamate 5-phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">NAG kinase</fullName>
            <shortName evidence="7">NAGK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">argB</name>
        <name evidence="9" type="ORF">ASE19_23305</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the ATP-dependent phosphorylation of N-acetyl-L-glutamate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + N-acetyl-L-glutamate = ADP + N-acetyl-L-glutamyl 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:14629"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:44337"/>
            <dbReference type="ChEBI" id="CHEBI:57936"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.8"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 2/4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the acetylglutamate kinase family. ArgB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.8" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892506.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58981">
        <property type="protein sequence ID" value="KRC58981"/>
        <property type="gene ID" value="ASE19_23305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="901370at2"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00107"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003991">
        <property type="term" value="F:acetylglutamate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042450">
        <property type="term" value="P:arginine biosynthetic process via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04250">
        <property type="entry name" value="AAK_NAGK-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00082">
        <property type="entry name" value="ArgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004662">
        <property type="entry name" value="AcgluKinase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037528">
        <property type="entry name" value="ArgB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001057">
        <property type="entry name" value="Glu/AcGlu_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041727">
        <property type="entry name" value="NAGK-C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000728">
        <property type="entry name" value="NAGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00474">
        <property type="entry name" value="GLU5KINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00761">
        <property type="entry name" value="argB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="1 7" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AA_kinase" evidence="8">
        <location>
            <begin position="37"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="77"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="7">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="7">
        <location>
            <position position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC58981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="33137" checksum="F28E1822931DC394" modified="2016-01-20" version="1">MSTDASNDMTSEPGKPDPYKAATLAGALPWLKAYHGKVVVVKYGGNAMTDDTLKRAFAEDIAFLRFAGFRPVVVHGGGPQISQMLDRLGIESEFRGGLRVTTPEAMDVVRMVLVGQVQRELVGLINEHGPLAVGLSGEDAHLFTAEATGTIVDGEEVDLGLVGEVAHVRPEAVLDLIEAGRIPVVSSVAPDIDGVVHNVNADSAAASLAVALGAEKLLVLTDVEGLYLDWPDPEEVIGEISPEALEDILPTLASGMIPKMSACLQAVRGGVGRATVVDGRQAHAVLLELFTDEGVGTQVLPGVTTKTRKAREILK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ65</accession>
    <name>A0A0Q8VQ65_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00445</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896800.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59540">
        <property type="protein sequence ID" value="KRC59540"/>
        <property type="gene ID" value="ASE19_00445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2039173at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035172">
        <property type="entry name" value="DUF5302"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17227">
        <property type="entry name" value="DUF5302"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="60" mass="6464" checksum="18F26488BFF53B85" modified="2016-01-20" version="1">MAANEANDDLKARMREALDRKNRKEKGVHEDGPVREKAHGSEVVGGAPKMHRRKAGGGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ75</accession>
    <name>A0A0Q8VQ75_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23365</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57769">
        <property type="protein sequence ID" value="KRC57769"/>
        <property type="gene ID" value="ASE19_23365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2087304at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="20"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="77" mass="8969" checksum="567AFAA2AD6936F7" modified="2016-01-20" version="1">MREQAKHRLPAPVVDRIRARASLRERVRVLEAEAQESRQLNRRIAELTDVVAELLIPLDARDQDRVDEVLARYQQGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ93</accession>
    <name>A0A0Q8VQ93_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894059.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55015">
        <property type="protein sequence ID" value="KRC55015"/>
        <property type="gene ID" value="ASE19_06110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2097524at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="121" mass="12449" checksum="3239D2AC1A564896" modified="2016-01-20" version="1">MTTLQRAPIAVLLFVAGGVVALCTVLLHDYPWGLVLGVVTTVATLVALPPGWWGRFAFALGWMGLLWRAATETAAGDYLVATDASGYVLLVFGLGVLAAGLAGLLPRRGPDDDSGTVGPAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQK5</accession>
    <name>A0A0Q8VQK5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">TGc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_02425</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892719.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56701">
        <property type="protein sequence ID" value="KRC56701"/>
        <property type="gene ID" value="ASE19_02425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1043186at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021878">
        <property type="entry name" value="TgpA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002931">
        <property type="entry name" value="Transglutaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11992">
        <property type="entry name" value="TgpA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01841">
        <property type="entry name" value="Transglut_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00460">
        <property type="entry name" value="TGc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="47"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="73"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="130"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="155"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="179"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="233"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="630"/>
            <end position="649"/>
        </location>
    </feature>
    <feature type="domain" description="TGc" evidence="3">
        <location>
            <begin position="490"/>
            <end position="560"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="313"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="562"/>
            <end position="627"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="578"/>
            <end position="626"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="799" mass="84114" checksum="DA729F175F7465A3" modified="2016-01-20" version="1">MTSHRAPAPEGSNVPFAPGLVVGLVGLATTWVALTAWQGFVSQPTTYLNRVAVVGAVVVTLGAVLRWRAAPRWLTALLQVLVAAAIVSWQITGSPLPVGGSAAEIGHALDLAVDSARTYSAPIGPNVPPLWPLLLVCGAVFVVLVDVVACTYRRVPGSGLVLLAIYSVPSGLLDDGPGWGSFAIAAAGFLLLLHLDARENLQRWGRPLGPDDASPWGHGNPVREAARAGAGRIGVTAVALALVVPAFVPVLGTDLFNLGGGGSGGDIRIRKPIADMRRDLERGEDVPLVQVQTDDPSPSYLRISVLNRFTGQEWSSGDRDVDSENTASGALPPPAGLAESVPRDQYDYQVRITDELDSTWLPTQFPASAVRADGDWRFDPATMDFLAADKDLDTRGIAYSLTSVVPHYGTDGRYFRDPAAGAVSDEVLDLPTGIPPIVRDLARSITRPADNDYERALMLQRFFRQDGGFVYDLRKAPAGTGNGTLEAFLSPGGRVGYCEQFASAMAVMARILGIPSRVAVGFLEPDPLGDGLYEYSSHDLHAWPELYFAGAGWVRFEPTPSGRVESVPDYSRVPLDGIGEENTSNATSSSASNGGTATVAPNRPTNRPSTAPEDTASDSSGAGSHTGRNLAVGGGALLVLLLVAAAVLGPRSVRRTARRVRLGGGPDELWAELRATAVDLGVPWPDGRSPAEVGAVLVDRLGDPSAEQLERPRTGADVAPEAARALARVVLAVERARYARPGAAGAAGGAVGTLETVDVEADVTLVAASLAAGVTPRERRRAEWLPRSVWGGVRARLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR38</accession>
    <name>A0A0Q8VR38_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">4-diphosphocytidyl-2-C-methyl-D-erythritol kinase</fullName>
            <shortName evidence="8">CMK</shortName>
            <ecNumber evidence="2 8">2.7.1.148</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7 8">4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ispE</name>
        <name evidence="10" type="ORF">ASE19_01190</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>4-CDP-2-C-methyl-D-erythritol + ATP = 4-CDP-2-C-methyl-D-erythritol 2-phosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18437"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57823"/>
            <dbReference type="ChEBI" id="CHEBI:57919"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.148"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 3/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the GHMP kinase family. IspE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.148" evidence="2 8"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896671.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59670">
        <property type="protein sequence ID" value="KRC59670"/>
        <property type="gene ID" value="ASE19_01190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1938933at2"/>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00094"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050515">
        <property type="term" value="F:4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00061">
        <property type="entry name" value="IspE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036554">
        <property type="entry name" value="GHMP_kinase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006204">
        <property type="entry name" value="GHMP_kinase_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004424">
        <property type="entry name" value="IspE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00288">
        <property type="entry name" value="GHMP_kinases_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF010376">
        <property type="entry name" value="IspE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55060">
        <property type="entry name" value="SSF55060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00154">
        <property type="entry name" value="ispE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="5 8 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GHMP_kinases_N" evidence="9">
        <location>
            <begin position="91"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="15"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="99"/>
            <end position="109"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00032554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC59670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="301" mass="31272" checksum="89E2A8DDB4A23AA7" modified="2016-01-20" version="1">MVEPTARVTVRAPAKVNLHLGVGGPRPDGFHPLATVYQAVGLYDDVTVTDAPDWSVGLTAPIDGVPLDDDNIAIKAGRALVAHHGLDLAARITIAKGIPVMGGMAGGSADAAATLLALDRLWDLQTSDDDLLRIAGELGSDVPFALLGGTALGTGRGEVVTPLADRTSVWWVVVLSDEGLSTPAVYRHFDVLSPDADADPPVPQALVDALAEGYTDEVGALLQNDLWPAARDLRPDLVDVEAQLRILGADGVLLSGSGPTLLMLHEDVEEARGAVADLTERGYRCTIAPGPVAGAHVVTYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR44</accession>
    <name>A0A0Q8VR44_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Tryptophan synthase beta chain</fullName>
            <ecNumber evidence="12">4.2.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">trpB</name>
        <name evidence="14" type="ORF">ASE19_00815</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 12">The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + L-serine = D-glyceraldehyde 3-phosphate + H2O + L-tryptophan</text>
            <dbReference type="Rhea" id="RHEA:10532"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.2.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 12">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4 12">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 12">Tetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 12">Belongs to the TrpB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.20" evidence="12"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896742.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59599">
        <property type="protein sequence ID" value="KRC59599"/>
        <property type="gene ID" value="ASE19_00815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="912282at2"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004834">
        <property type="term" value="F:tryptophan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00133">
        <property type="entry name" value="Trp_synth_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006316">
        <property type="entry name" value="Trp_synth_b-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006653">
        <property type="entry name" value="Trp_synth_b_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023026">
        <property type="entry name" value="Trp_synth_beta/beta-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48077:SF6">
        <property type="entry name" value="PTHR48077:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001413">
        <property type="entry name" value="Trp_syn_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500824">
        <property type="entry name" value="TrpB_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01415">
        <property type="entry name" value="trpB_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00168">
        <property type="entry name" value="TRP_SYNTHASE_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 12" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10 12" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="11 12 14" id="KW-0456">Lyase</keyword>
    <keyword evidence="9 12" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 12" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="PALP" evidence="13">
        <location>
            <begin position="77"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="12">
        <location>
            <position position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00002786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00009982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00011270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC59599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="450" mass="47989" checksum="3BDEA85B8AA0BFA1" modified="2016-01-20" version="1">MSDQVTYTLDPDEQPTHWYNIVADLPVPPPPPLHPGTREPVGPDDLAPLFPPELIAQEVTGERYVAIPEPVLDVYRQYRPSPLYRARRWEQKLGTSARIYYKYEGVSPAGSHKVNTAVPQVYYNSINGITRLTTETGAGQWGTALSYAAALFGVECEVWQVGASYDTKPQRRTLIEVFGGKVHRSPSRLTESGKAFAEDHPGSLGIAISEAVEVAAQDPGAKYALGSVLNHVLLHQTVIGEEALRQLAKAGETGADLVVGCAGGGSNFAGLAFPFLREKLAGNQSPRILAVEPSSCPTITRGEYRYDFGDTAGLTPLMKMHTLGHDFVPSPIHAGGLRYHGMAPLVSHAADQGHIDAVALHQNECFDAAVEFARTQGIVPAPESSHALAQVRREALAAAETGASPVIVVGLSGHGLLELGAYATYLSGNLEDDPLSDAALAEALANVPVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR98</accession>
    <name>A0A0Q8VR98_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04025</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892994.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56977">
        <property type="protein sequence ID" value="KRC56977"/>
        <property type="gene ID" value="ASE19_04025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1196738at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="281"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="347" mass="38571" checksum="5502F22790F1284B" modified="2016-01-20" version="1">MRDVTNQEVRFCRADDGVRIAWARHGSGPPLLIVSCWLSHLQHDWHSPVWRHFLDDLGDIATVIRYDERGFGLSEWEVTDFSLERRLADLEALVEAVGLDRFAVLGMSGGAPVALAYAHAHPDKVSRLVLYGGMAGGGLQQTDEAAEEAFVAMIRAGWARPDPLFRRVFTNSFIPDATEQQMEWMDELQRTSTNTENAICSRVARHATDVRPLLPELTVPTLVLHAEGDRVAPDWGPRLAAEIPDARLVMLDSRNHVLLADEPAWPVFLREVAGFVGEDRVVVSASCLSDREREILLLAAEGLDNTEIAERLTLSVRTVERHFQNTYLKLGLSGRTARAAAVARVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRG2</accession>
    <name>A0A0Q8VRG2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Flagellar biosynthesis protein FlgN</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01335</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896646.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59695">
        <property type="protein sequence ID" value="KRC59695"/>
        <property type="gene ID" value="ASE19_01335"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1624759at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007809">
        <property type="entry name" value="FlgN-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036679">
        <property type="entry name" value="FlgN-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05130">
        <property type="entry name" value="FlgN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140566">
        <property type="entry name" value="SSF140566"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0966">Cell projection</keyword>
    <keyword evidence="1" id="KW-0969">Cilium</keyword>
    <keyword evidence="1" id="KW-0282">Flagellum</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="17302" checksum="B23629DE048C2D68" modified="2016-01-20" version="1">MDRLSQILWRERELLETLAYKLEVERMVLATGKTRYLVNATREIEDVLEDLRATEVLRATAADEAAEKIGLTPNPSLGALAEAAPDPWGTILRDHRDVMIALAREIAETSEDAKGLITAGYRSARETLLALGGTTTASYTPSGDAVLTPAATHLVDRSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRY5</accession>
    <name>A0A0Q8VRY5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">3-hydroxyacyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03115</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892837.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56818">
        <property type="protein sequence ID" value="KRC56818"/>
        <property type="gene ID" value="ASE19_03115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="862072at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006176">
        <property type="entry name" value="3-OHacyl-CoA_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006108">
        <property type="entry name" value="3HC_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00725">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02737">
        <property type="entry name" value="3HCDH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3HCDH" evidence="1">
        <location>
            <begin position="7"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="3HCDH_N" evidence="2">
        <location>
            <begin position="112"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="domain" description="3HCDH" evidence="1">
        <location>
            <begin position="293"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="389" mass="40951" checksum="E94470C48B7C1222" modified="2016-01-20" version="1">MTSSEQIFNTLVLPYLNHAVRTYESGYASVADIDAAMRFGCGYPKGPLTVVDEIGAAQVRDLLAARYAETGDHLHQPADLLEKLVADGRTFADEAAAAGEAAAPTFKHEINKVGVVGTGTMASGIVQVFAQAGYDVVYVGRSQDKLDGVLGYITKNLDRAIAKGKGTEGDKDALLGRLTGSTEREALGGVDIVVEAIAEDLEIKLELFRDLYKIAKPGAILATTTSSLPITQLGEVTGRPQDVIGMHFFNPAPVMKLVEIITTPATSADVDETTRALTANVGKIGVSAGDRSGFIVNLLLFPYLNDAIKLAEGGEELATIDAAIKETAGFPMGPFELLDVVGNDVSLAIQKELYGEFGEAGFAPAATLVAKVDAGELGRKTGKGFHDYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTD8</accession>
    <name>A0A0Q8VTD8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23775</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894044.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57410">
        <property type="protein sequence ID" value="KRC57410"/>
        <property type="gene ID" value="ASE19_23775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041347">
        <property type="entry name" value="MftR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17754">
        <property type="entry name" value="TetR_C_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="18"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="209" mass="22877" checksum="02307B2C52C2BB52" modified="2016-01-20" version="1">MVDAAFRLFNEAGYDATSVDDIAAAAGVSRSSFFRLFGSKEKVIFPDHDAILAAVEERLAASTQKSAILAVSDAVRVVLFHYIAEGPLARRRYQLTSTVPALRDRELISGARYQQLFRQYISAWGDGSEESESRGELMAAAVVAAHNRVLRRWLREECEDPHLEIDEAMAQVNALFAPSQAATPAAPGAIVVVRTDQDLATIAEQLRSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUS0</accession>
    <name>A0A0Q8VUS0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00750</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896754.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59587">
        <property type="protein sequence ID" value="KRC59587"/>
        <property type="gene ID" value="ASE19_00750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1538300at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="17"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="196" mass="21280" checksum="419181ED9E8C42C7" modified="2016-01-20" version="1">MTPGPITPPLPLRTERLLLRTVVAEDRAAIGAYCADPEVTRYLPFPALDDQALTQRVDRLVAATAPAAVGEFLALAVEHEGVLVGDLMLRFSAAHGPDEAPSIAELGWVFGPGYAGRGFATEAARALVDLAFSTYPLHRLMAQLDPRNTRSAALCERLGMTHEAHTREDYPDREGGWSDTAVYGLLRREWESGRAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUT5</accession>
    <name>A0A0Q8VUT5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA repair protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00845</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896738.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59603">
        <property type="protein sequence ID" value="KRC59603"/>
        <property type="gene ID" value="ASE19_00845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1391445at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006307">
        <property type="term" value="P:DNA dealkylation involved in DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035552">
        <property type="term" value="P:oxidative single-stranded DNA demethylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.590">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027450">
        <property type="entry name" value="AlkB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037151">
        <property type="entry name" value="AlkB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032854">
        <property type="entry name" value="ALKBH3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31212">
        <property type="entry name" value="PTHR31212"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13532">
        <property type="entry name" value="2OG-FeII_Oxy_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe2OG dioxygenase" evidence="1">
        <location>
            <begin position="104"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="23144" checksum="7AC53BD209252F53" modified="2016-01-20" version="1">MSVDFQSSLFDAPATDHAPVERRPLSGGAWVDVARNWLPDADDVFATLVRDVPWRAERRAMYDRVVEVPRLVYTYMIGEELPHPRLAAARDELSTRYADELGEPFRTAGCCYYRDGRDSVAWHGDTIGRGSTHDTMVAIVSLGDPRRLHLRPRDPERRAEAFAVEMGHGDLVVMGGSCQRTWEHAVPKVASAGPRISVQFRPLNVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVG1</accession>
    <name>A0A0Q8VVG1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00480</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896795.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59545">
        <property type="protein sequence ID" value="KRC59545"/>
        <property type="gene ID" value="ASE19_00480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1955433at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="77" mass="8891" checksum="6873474061D5B3F2" modified="2016-01-20" version="1">MPTLSDVARQLDRRGTLTHERAAVLQLAAAPERPERYKCVHADLAGAGWSHPWPDEEMYPHACCREHEHCPAEWFRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXK8</accession>
    <name>A0A0Q8VXK8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22960</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893041.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58994">
        <property type="protein sequence ID" value="KRC58994"/>
        <property type="gene ID" value="ASE19_22960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="145"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="195"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="237"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="27796" checksum="A6CBFCFE69270A06" modified="2016-01-20" version="1">MKSLATLGDFVTFAIKVFREVPATVTMYPKETLRQIKDIAWGSGALLVGGGTVGVMILLSVAAGTSIGIEGFNGLEIVGLAPLTGFISASANTRELAPLIAALALGAQVGCRFTAQIGSMKLHEEVDALEVMAVSAMRYVVTTRVIACMVAILPLYMIGLIGSYVASQASVVLLFGQSPGQYDHYFSTFIQGRDILFSVIKILIFALTVALIHSWYGMRVSGGPQAVGEATGTGIRASIVSIVVLDMVLTLLFWGGDPGFRISG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W201</accession>
    <name>A0A0Q8W201_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896604.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59735">
        <property type="protein sequence ID" value="KRC59735"/>
        <property type="gene ID" value="ASE19_01565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="863270at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="141"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="175"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="209"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="253" mass="28117" checksum="98EEB4036BC6B409" modified="2016-01-20" version="1">MHPSQFIHHKVQLGLWVCGIGFGVLFFVGLAPLSGFIPPPSPELSGAELMTKYGDHLNLVKTGIVVGLLGAALLVPWSTLVAVQIARMEEGRRFPVWSILSLVAGAVNAVAFILPFIFWAGAYYRADRSPELVQLISDMTWIEFLLFFPAFSMQLICLGLAGLSQRQGPQVFPRWFYYLNLWMAVVGSTGILAIFFFDGPFAWNGAIGFYLPVGSYVPFLLVTWWQFYKAIQAEKRYYEELAAVGATPELVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMN2</accession>
    <name>A0A0Q8UMN2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20365</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46212">
        <property type="protein sequence ID" value="KRC46212"/>
        <property type="gene ID" value="ASE19_20365"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="197"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="197"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="235" mass="25379" checksum="BDBE698DEF935E6B" modified="2016-01-20" version="1" fragment="single">SDLALDEIAIARCEGVGATRRALADALDLRHRLPLVWAGAQKLECETWVVRRVATLSRKLTRDQARIVDTAVAAALGQAPNRILAIAEAKIIEADTTTHQHRIEANQRHNGVWYSQPKPGDQIADVDNAAGVATAYARLDEADARVHEAFIEQLAVALAEHASPEEQDLGMDHWRAEAFAMSADPAAVLAFXVPRTSSCTSRPLTPATSHPSHGSRTSAPGPSPRSRRCSPGTRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMU4</accession>
    <name>A0A0Q8UMU4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">GGDEF domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20970</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896085.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46314">
        <property type="protein sequence ID" value="KRC46314"/>
        <property type="gene ID" value="ASE19_20970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1635706at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="153"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="2">
        <location>
            <begin position="257"/>
            <end position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="388" mass="40991" checksum="435A0BF087168271" modified="2016-01-20" version="1">MLDTFTLRVAFGLIAACVLVLFYAATYRPTRSAYSGWWCVSLACFVTGALLYLCNGTPLQVVANPMGNTAGVLGAGGVWAAARSLRGRAVPVAQLVVPPVLVLAVALLDDPAHDVWTGGAAYLLGMAGQVGRSSWELRCVLRERDEEPGQAPVVFAVRAMAVASGVIAAFYLLRAVVFVVVGAENPVFVVGFGPAATTLMTLLLLVVVTFSMATLGHAQQTTELRVRATRDGLTGLLNRSEFLRAAQREVDRGWSPAPMSVLLADLDDFKTLNDRGGHAAGDAALRRFAEVCETVLGAHGIAGRLGGDEFVMLVPEEDAERVATAVCRGYAGVGTTVSIGIAPAPPHDAITDALEHADAALYRAKADGRDRAVHWRDGEAERPGRRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN50</accession>
    <name>A0A0Q8UN50_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">3-hydroxybutyryl-CoA dehydrogenase</fullName>
            <ecNumber evidence="5">1.1.1.157</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_21625</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.157" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896200.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46430">
        <property type="protein sequence ID" value="KRC46430"/>
        <property type="gene ID" value="ASE19_21625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="862072at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008691">
        <property type="term" value="F:3-hydroxybutyryl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022694">
        <property type="entry name" value="3-OHacyl-CoA_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006176">
        <property type="entry name" value="3-OHacyl-CoA_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006108">
        <property type="entry name" value="3HC_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00725">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02737">
        <property type="entry name" value="3HCDH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000105">
        <property type="entry name" value="HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3HCDH_N" evidence="4">
        <location>
            <begin position="13"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="domain" description="3HCDH" evidence="3">
        <location>
            <begin position="186"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="64"/>
        </location>
        <ligand>
            <name>CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="1">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000105-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000105-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="281" mass="29036" checksum="D38C20AEC75C979A" modified="2016-01-20" version="1">MTSENARGWVPATVGVYGGGRMGGGIAHAFAAVGAEVIVIESDDESASAARGRIKASIAKAVEKGADITGSVEVVTDAGALAACPLVVEAVPELIDLKRAVLARIAEAAPDAVIGSNTSSLSIDELATELPDPALLIGLHFFNPVPISDLVEVVVGNRTDPVLVKDAQSWVSGLGKTAITVKDSPGFASSRLGVAIALEAMRMLAEGVATAADIDTAMTLGYRHPVGPLKTTDIVGLDVRLNIAEHLERELGPRFAPPQVLRDKVAAGELGRKTGQGFYSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNK2</accession>
    <name>A0A0Q8UNK2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_22235</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46533">
        <property type="protein sequence ID" value="KRC46533"/>
        <property type="gene ID" value="ASE19_22235"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="91"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="123"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="148"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="180"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="222"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="256"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="288"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="311"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="351"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="378"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="24"/>
            <end position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="409" mass="41534" checksum="D02F263CA1B2794F" modified="2016-01-20" version="1">MTSSPTTTSTEARPAVAHSRPALAILALAVGGFTIGTTEFMTMGVLPEVADGVDVSVPTAGHIISAYALGVVVGVPILAFFGAALPRRAMLVAMMVAYAAFNLLSAAAPSYEILAAARFLDGLPHGAYFGVASLVAASLVAPERRGRAVASVMLGLSVANVVGVPLATFLGQQAGWRSTYLLGGLLALVTVALVLAVVPSVPGDSEASGRKEAKEFFGSLQVWLTMAVGAVGFGGMFAVYSYIAKTVTEVGGLDRGTVPFFVLALGLGMVVGTWLAGELAAWSVYRSLLGSGITGIVLMLVYYVAAPGGWLLWPVAFLVTAVGSVLVINLQLRLMDVAGDAVTLGAAMNHAALNIANALGAWLGGLVIAAGHGYRAPALVGAGLAAVGVVILLVSAVVHRRDLVVAEPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNP7</accession>
    <name>A0A0Q8UNP7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">2-phospho-L-lactate transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20755</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46622">
        <property type="protein sequence ID" value="KRC46622"/>
        <property type="gene ID" value="ASE19_20755"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043743">
        <property type="term" value="F:LPPG:FO 2-phospho-L-lactate transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10680">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01257">
        <property type="entry name" value="CofD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002882">
        <property type="entry name" value="CofD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038136">
        <property type="entry name" value="CofD-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010115">
        <property type="entry name" value="FbiA/CofD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43007">
        <property type="entry name" value="PTHR43007"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01933">
        <property type="entry name" value="CofD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142338">
        <property type="entry name" value="SSF142338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01819">
        <property type="entry name" value="F420_cofD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="327" mass="34135" checksum="D540CC4C398F83A4" modified="2016-01-20" version="1">MGGAKFLQGLLHGISAGLLPGVAPDAKVTVIANTCDDWWVHGLKVCPDLDTVMYTLGDGIDLERGWGRREETWSAKDELAAYGVEPTWFGLGDRDIATHLVRTQMLDAGYPLSAVTAALCKRWLEPVYGDRLELLPMTDDRAETHVAVADAEAASGRRVVHFQEYWVRLRAGVPAETLVFVGLDQATPAPGVLEAIAGADVVFLPPSNPVVSVGTILGVPGLRDAIRATGARVVGLSPIVGSSHVRGMAEQMLTSIGVEVSAAGVGLNYGARSAGGVLDGWLVDERDADQVARLEAAGIAAAAVPLMMTDHDATAAMAAAALALVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUC3</accession>
    <name>A0A0Q8UUC3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17755</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48773">
        <property type="protein sequence ID" value="KRC48773"/>
        <property type="gene ID" value="ASE19_17755"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="22225" checksum="98B92C5D178539B9" modified="2016-01-20" version="1">MIGSADIKDGSIRSIDIANGTLTGADVRDGGLTGDDIRNSSVRSADIVDGAVRLADLSPDARAAFAPPVGTIGVEVATLAAPKAIAHIGGGINANNTDLDTGLTLPAGRYLITVDGAFESAQAAADPSVDVYPQLSLWIDRSGDGAFQWQQQEGDISPNALMPAAANRHISVSGTTVVELTEETYVGLLGFGYDSAQGTARSGDINVKSATLTATPLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUU1</accession>
    <name>A0A0Q8UUU1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LLM class F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22425</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896332.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46563">
        <property type="protein sequence ID" value="KRC46563"/>
        <property type="gene ID" value="ASE19_22425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019951">
        <property type="entry name" value="F420_OxRdatse_Rv3520c_pred"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03559">
        <property type="entry name" value="F420_Rv3520c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="11"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="345" mass="37004" checksum="53265C4FC3A616DD" modified="2016-01-20" version="1">MKLSMPLVYAGNPRESADQVAALEKAGLDTIWVAEPYGFDAPTLMGYLAAKTETVEIGAGILNVYSRTPGALLQTAAGLDNVSGGRAVLGLGASGPQVIEGFHGLPYDRPLTRTREVIEVLRAGLRGERLDYQGRTVQVPLPEGQGLGLGKPLKLLNKPERADLPIWVAALGDKNVAMTAEVADGWLPFLYYPEKAKDVWGEPLARGAAKRSADLKPLEICAGGMVAIGEGPETKALLDFMRPLYALYVGGMGARDKNFYNQLACEYGFEKEAKEIQDLYLSGKKKEAEALVPLEWLEAGNLVGPASYVQERIAAFKESGVTNLSVSPASDDPAATIAQIKEWVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV68</accession>
    <name>A0A0Q8UV68_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Polyketide cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18745</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AHA1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49118">
        <property type="protein sequence ID" value="KRC49118"/>
        <property type="gene ID" value="ASE19_18745"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013538">
        <property type="entry name" value="Activator_of_Hsp90_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08327">
        <property type="entry name" value="AHSA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006817"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="165" mass="18332" checksum="574082E81CF3F611" modified="2016-01-20" version="1">MTSTPGTTIEADPDVPTVRIVREFDAPRELVYRAHVEPELVKQWLGPHSIGMDIEVWDMRTGGEYRYTATRGGEEVAHFYGSVHRVTENEKIVQTFGFEEMPDAVSLDTLVFHELPDGRTRLEALSVVYDFESRAGMLASGMEVGVNEGYDALDALLVRLAGAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV72</accession>
    <name>A0A0Q8UV72_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17795</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893827.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49098">
        <property type="protein sequence ID" value="KRC49098"/>
        <property type="gene ID" value="ASE19_17795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2031060at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="63" mass="7055" checksum="3DB8F1350F22793F" modified="2016-01-20" version="1">MLFPEDLVRSHGFAILASFVAINTVVYVALAIAKAMPKIYVGDHLPRRYERTETRSIHPDGPC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV97</accession>
    <name>A0A0Q8UV97_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18645</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893328.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48927">
        <property type="protein sequence ID" value="KRC48927"/>
        <property type="gene ID" value="ASE19_18645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="901266at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="34"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="62"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="486"/>
            <end position="507"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="178"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="220"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="275"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="614" mass="64580" checksum="A574521E8830C5AC" modified="2016-01-20" version="1">MSQMTDRTDMTDMTETAERPLPAAGHQVEVRRNAALSVGIGGFAGLMTVAFAARAFTGGTALDWLAFGILALVTGIHLASLSDSRAPLLVADEHGVRVREGAIWRGIAWQDIDCLEHLPRHGLFRDGHLLVDGYDDRQLVVPLTLATRLVGASAVSLSDVLADLADDRADVVEVVSGVDEEPSRRASVPSLSDLYGDEDGTEPAPERRGIAARVAAGLSGVVPGGRSAETDESDETEVDGIDRVEDTLVVPAEDLTPAAADVDELRSRLARIRESSGDTGTIPAVTDTHTDTHTDTESTDEIVLDELGEASTDEIAVVDADIHDQDDEPPAPGRPTVLSARVERPATIRAQAVVETEPAAVEDNVTVVLDDLAVRPAVDPVIGPEIAAARERLRLTIDQVSDRTRIRPHVVEAIEVDDFGPCGGDFYARGHLRTLARILGIDAAPLVASYDERYAHEPVDPRRVFQSELATGTGGAIRSTRGGRNWSVMIAAVMGAVLVWSVARLVMDGPAPVADAPVLNQSGGVTGTAQVKGDPVKLTLTAAGGGATLNVRDGGGRIVFEGNLAFGQTSELRVVPPIRIYSTDGSVTYAVGGAKAKALGETGAEASKTVIAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXW0</accession>
    <name>A0A0Q8UXW0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ArsR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15935</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893573.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50106">
        <property type="protein sequence ID" value="KRC50106"/>
        <property type="gene ID" value="ASE19_15935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1288973at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="24362" checksum="D3DFF99C3B2B4F85" modified="2016-01-20" version="1">MTGSDQSTRQRVARSILVNGPSTAAALAERLELTPAAVRRHLDQLLAEGAVDARDPRPVGSRGRGRPAKVFALTERGRDSFDQQYDDLATEAMRFLAETGGTEAVKAFAERRASFIERRFPEVRDAHPEASPAEVLAMVFSDEGYAAAVRELPVVGEQLCQQHCPVSHVAHEFPQLCEAETEAISRVLGTHVQRLATIAHGDGVCTTCIPVSTGSTTEKKEQVTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY16</accession>
    <name>A0A0Q8UY16_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16315</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893638.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50170">
        <property type="protein sequence ID" value="KRC50170"/>
        <property type="gene ID" value="ASE19_16315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1920068at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="90" mass="9990" checksum="95FCF96B2FF3AF23" modified="2016-01-20" version="1">MEEALPRRGRRVTPLPRAGETYADQRGEGRRLRVAWHTERDVVVLSLWRDNVCTGTFQLTAADAADLVDVLGAGRDVSYAAALGQRRAVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYD8</accession>
    <name>A0A0Q8UYD8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dodecin family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16935</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893749.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50280">
        <property type="protein sequence ID" value="KRC50280"/>
        <property type="gene ID" value="ASE19_16935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2025589at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1660.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009923">
        <property type="entry name" value="Dodecin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025543">
        <property type="entry name" value="Dodecin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036694">
        <property type="entry name" value="Dodecin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39324">
        <property type="entry name" value="PTHR39324"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07311">
        <property type="entry name" value="Dodecin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89807">
        <property type="entry name" value="SSF89807"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="71" mass="8189" checksum="54787DDF1F92EECA" modified="2016-01-20" version="1">MSNRTYRISEIVGTSPDGIDQAIRNGVERAGQTLRHLDWFEVQQVRGQVKDGQVEHFQVTMKIGFRLEDDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYE4</accession>
    <name>A0A0Q8UYE4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-alpha-hydroxysteroid dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16955</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893753.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50284">
        <property type="protein sequence ID" value="KRC50284"/>
        <property type="gene ID" value="ASE19_16955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1356861at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="253" mass="26331" checksum="88713362C92730AC" modified="2016-01-20" version="1">MTNGERAAEPAGRMQGSTVVVTGGARGIGAACARLLVADGASVVVADVLGEEGRALAAELGPRASYSELDVTSEDAWQRTVRDAEATYGAVTGLVNNAGVVHVDPIEKLAEADFRRVVDVNQVGVFLGMKSVIPAMKRAGTGSIVNISSIGGIIAFSNILGYTASKWAVRGMTKTAAQELGPFGIRVNSVHPGVITTEMTQESDRSQGMVDKQPLARQGTGTEIAQLVRFLLSDESSFSTGSEFVADGGYTTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYF3</accession>
    <name>A0A0Q8UYF3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Cytochrome BD ubiquinol oxidase subunit I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_17040</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cell inner membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the cytochrome ubiquinol oxidase subunit 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893769.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50300">
        <property type="protein sequence ID" value="KRC50300"/>
        <property type="gene ID" value="ASE19_17040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="271551at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070069">
        <property type="term" value="C:cytochrome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019646">
        <property type="term" value="P:aerobic electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002585">
        <property type="entry name" value="Cyt-d_ubiquinol_oxidase_su_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30365">
        <property type="entry name" value="PTHR30365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01654">
        <property type="entry name" value="Cyt_bd_oxida_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006446">
        <property type="entry name" value="Cyt_quinol_oxidase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 12" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 12" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5 12" id="KW-0349">Heme</keyword>
    <keyword evidence="10 12" id="KW-0408">Iron</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="53"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="91"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="127"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="183"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="225"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="342"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="376"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="426"/>
            <end position="445"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRNR" id="PIRNR006446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC50300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="477" mass="52639" checksum="855B638829673D04" modified="2016-01-20" version="1">MDPTDIARWQFAITTVYHFLFVPITIGLSAIIAGYEITWLRTRDERWLRLTKFFGKLFLINFAIGVVTGIVQEFQFGMNWSDYSRFVGDVFGAPLAIEGLLAFFLESTFLGLWIFGWDRLSPRLHAACIVLVHIGTLFSAYFILAANSWMQHPVGYSFNPDTGRAEMNDFAAVLFNKVQLVTFPHVVLSAYMTGAAFVVGIALWHLRRATTDADRALHRPAVRTGAWIVLVAALGVIVSGDVQGKIMTEVQPMKMAAAEGLYETEQPADFSVFQLGTLDGEHETFSVKVPGLLSFLATGTPGGEVEGINDLREQYRETYGADPGAAYYSPGDYTPVIPLTYWSFRLMIGLGMAGVAVAAWVLWATRGSRTPQGRPVLAAAIALPFLPLLANSFGWIFTEMGRQPWAVFGLMTTEHSVSPGLTTTEAWISLITLTAVYGVLAVVEVRLMLTWIRRGVEELPPDLPADTGEDRPLAFAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYK7</accession>
    <name>A0A0Q8UYK7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">AsnC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_16445</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50358">
        <property type="protein sequence ID" value="KRC50358"/>
        <property type="gene ID" value="ASE19_16445"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019885">
        <property type="entry name" value="Tscrpt_reg_HTH_AsnC-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00519">
        <property type="entry name" value="HTH_ASNC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="130" mass="14284" checksum="31497555C6C4FD00" modified="2016-01-20" version="1">MSYTDLGRATGLSTSAVHQRVKRLEQRGLILGYGATVNYAEIGLPLTAFIAIRPIDPSQPDDCPDRLIGMPEIESCWSVAGEESYILKVRTTSPAEMEGLLGRIRTAANVSTRTTIVLSTYYENRPVSEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYM1</accession>
    <name>A0A0Q8UYM1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">AsnC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_17230</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50374">
        <property type="protein sequence ID" value="KRC50374"/>
        <property type="gene ID" value="ASE19_17230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="156" mass="16843" checksum="B0A0FFA5AEB0E7B2" modified="2016-01-20" version="1">MDAAIVRELQDDARLANNVLAARVGIAPSTCHGRVRSLFERGVIRGAHAEVDQAAIGRPLQAMISVRLRPHARGELSAFAQMMAELPEVLNVYFLAGADDFLVHVATAGSEELRGFVVNHLSGTKDVAMTETSLIFEHLRGRPAAEPRSVRPAPQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ36</accession>
    <name>A0A0Q8UZ36_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF2786 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16150</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50351">
        <property type="protein sequence ID" value="KRC50351"/>
        <property type="gene ID" value="ASE19_16150"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024498">
        <property type="entry name" value="DUF2786"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10979">
        <property type="entry name" value="DUF2786"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2786" evidence="1">
        <location>
            <begin position="8"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="268" mass="29578" checksum="12CA7ACCB2085D9C" modified="2016-01-20" version="1">MDGEDRTLLRIGRLLRQAERTSNTAERDAFFAKAQTLATRHQIALAVARASARNEEQRQDPAWETVLIGESGKRSLARYVRLVLEIARANDVRVAIYTSNTRVTLYGFPSDIAIVKALYASLVTQMVADGDAHLRSGAHKADTRQVWNARRRTWEERPVHGSTARAAFYEAWADHVGERLTRAREEARAAAIAAEPGVPDRPTSTELALRAKEVEVVDYFRHMQREHGIRGTWKGAAAAAHAAPGSHEAGVRAAARARLGSEKAISRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZC7</accession>
    <name>A0A0Q8UZC7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22215</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896298.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46530">
        <property type="protein sequence ID" value="KRC46530"/>
        <property type="gene ID" value="ASE19_22215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1986894at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="78" mass="8504" checksum="4A87F7B4247DCFB3" modified="2016-01-20" version="1">MKFERKHAILLLAVAAWNVFSFGNFAKNLYNAYDAGEDRATGYWVAHTVLIIVNFVIAGLLGSLGWKALKASKSSEGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZG0</accession>
    <name>A0A0Q8UZG0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22415</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896330.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46562">
        <property type="protein sequence ID" value="KRC46562"/>
        <property type="gene ID" value="ASE19_22415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1883184at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="39"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="332" mass="34130" checksum="B9792F6AF86B5979" modified="2016-01-20" version="1">MTDENWLRDGLADAVPTPPASPDRADGARAMARRARRTTAVVIGGAAASVLAVAGVVAVVSGGEGSPHDADDVVAASPYDAPACPASPVDARTQVGPDHVPDGASSVRLCAGNGNPIEVPVDALVTGVDEVAEAVNGLPTAAADQGCTMELGPGYQLVFAYSDGPPVVASGDLYGCRPVVVHGVERTGADVPWQRFIDLLRAQRERLRPQAPDASRIDCAAQPASPTLGRAQDLAVAAVCVGDGTPATVTDDELDLLLGDMAAHTTKNAGYVDCASSPPFPRIVGLTTWGDRVEIRSDCGDSWFSVDDATNSIWQPSPAAAPIIERLVADAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V263</accession>
    <name>A0A0Q8V263_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15585</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893510.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50041">
        <property type="protein sequence ID" value="KRC50041"/>
        <property type="gene ID" value="ASE19_15585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1356861at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="26005" checksum="70A336B23C548007" modified="2016-01-20" version="1">MALSLDLTGRVALVTGGARGIGRGITEVLLAAGATVVTCGRSEAEPPAGASHGLCDVRDAASVEALVAGIVADHGRLDVVVNNAGGAPFAPAATASARFHDKIVGLNLMSSLLVSQAANRVMQDQPGGGSIVNISSVSAVRPSPGTAAYGAAKAGVDSLTTSLAQEWGPRVRVNAIDVGLVRTPDTADHYGGDATVAAIEATIPAGRMADVAEIGQVVAFLASDLASYVSGARIACHGGGEQPVFLYIAQNAQNNQGESQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V296</accession>
    <name>A0A0Q8V296_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">5,6-dimethylbenzimidazole synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17450</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893124.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48720">
        <property type="protein sequence ID" value="KRC48720"/>
        <property type="gene ID" value="ASE19_17450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1847197at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012825">
        <property type="entry name" value="BluB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02476">
        <property type="entry name" value="BluB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="1">
        <location>
            <begin position="24"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="229" mass="25366" checksum="323B0060382364DE" modified="2016-01-20" version="1">MSTLSAEQTIGQTTGQTTGLYDVIERRRDVRAEFTGSPVPEDVLLRVLGAAHRAPSVGMSQPWDFVVVRDAAKRAAFRDHVAHERDTFAASLPPERRSTFDRIKVEGICESSMGVVVTHSQSRGGQHVLGRHAIADAGLYSTVLAIQNLWLAATAEGLGLGWVSFYRESFLQDLLGIPEDVRPVAWLCLGTVSHLETVPDLERHGWRSRRPLEDAIHEDTWQMKESVDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2F4</accession>
    <name>A0A0Q8V2F4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_14825</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896535.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51471">
        <property type="protein sequence ID" value="KRC51471"/>
        <property type="gene ID" value="ASE19_14825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1101128at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="7"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="43"/>
            <end position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC51471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="336" mass="36056" checksum="412FCEAAE87784E9" modified="2016-01-20" version="1">MNAPHVLEVEDLRTVFHTPRGDVHAVDGVSFSLAAGETLGLVGESGSGKSVLGRTVMGLVASGPRTTVTGRVRIGGRDVHALKPAERRRLWGPEVAMVFQDPMTSLNPVKRVGTHLTETLRRHLGCSRTEATERAVDLLRQVGIPEPARRMGQYPHELSGGMRQRVVIAIALACDPRLLIADEPTTALDVTVQKQILDLLASLVAERTMAMVLVSHDLGAVAGRTDRVQVMYAGRTVESGPTRPVFDVPAHPYTDALLASIPRLDNPPHTLLRTIEGNPPDMARPPAGCRFGPRCAFVTDQCREAQPEAAVVPGGRAVACHHPLSRSILEGAGDGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3T1</accession>
    <name>A0A0Q8V3T1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893171.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48769">
        <property type="protein sequence ID" value="KRC48769"/>
        <property type="gene ID" value="ASE19_17735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2024715at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="146"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="178" mass="19123" checksum="90950A6BF2C2005A" modified="2016-01-20" version="1">MLWLVAGLVLVLAVIAALAFVVLGDDEDDEDDKKAAGDGGARTASCESYQTLIMSSEVQAAAGFDPDELQSMYDAVLADVEDDQEFAALVEDEAAAVVPYYRALADWKQSVEDALSRGEYPETTVPAEITEQQGQLQSAQRGVLEACSDVWSSGDEGDEPIPEITAPTLETPSWMDEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3U9</accession>
    <name>A0A0Q8V3U9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Amidinotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16090</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893599.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50131">
        <property type="protein sequence ID" value="KRC50131"/>
        <property type="gene ID" value="ASE19_16090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="592329at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014541">
        <property type="entry name" value="Amdntrnsf_FN0238"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43224">
        <property type="entry name" value="PTHR43224"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028188">
        <property type="entry name" value="Amdntrnsf_FN0238"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="34163" checksum="1EBC20C42CE4C71A" modified="2016-01-20" version="1">MSTIGSAQAPRDVVMVRPHRFAPNPETIADNLFQPRTPVVPTSALAEAAYWEVTAMVATLTEAGIRVHLFEDEEAGRPDSVFPNNWFTTHPDGRVALYPMYSPNRRTERRRDIIDALRGTFRITAVHDYSVLEDDALYLEGTGSMVLDHDHRVAYVARSFRSHDRAVAMVCQDLGYRPVVFSTVDGRGAPIYHTNVMMAVGPRLALVALDSIPDAGERHAVATSLATTGHTVVELTSDQLDEFAGNTIELTGADGPCLVLSARAHASLTPGQLQVLSAHTRLLPIDVPTIELAGGSVRCMIAGIHLAARQVAQPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4C9</accession>
    <name>A0A0Q8V4C9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Prephenate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893792.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50323">
        <property type="protein sequence ID" value="KRC50323"/>
        <property type="gene ID" value="ASE19_17175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="533829at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008977">
        <property type="term" value="F:prephenate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004665">
        <property type="term" value="F:prephenate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006571">
        <property type="term" value="P:tyrosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003099">
        <property type="entry name" value="Prephen_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02153">
        <property type="entry name" value="PDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51176">
        <property type="entry name" value="PDH_ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Prephenate/arogenate dehydrogenase" evidence="1">
        <location>
            <begin position="12"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="361" mass="36753" checksum="34F1191D21C05027" modified="2016-01-20" version="1">MSETTAAGALVGPVEIVGTGLIGTSIALACRRAGLEVLLTDTTPDHVRTATGLGAGRARQPEDVPQLVVVAVPPDAVGAAITAALDAAGPETVVTDVGSVKAPPMDAVARHPAVSRYVGSHPMAGTEHSGPLSANATLFDGRPWAVTPGPDATPAATRVVEALVRVCGAVPVLLDPVEHDRAVARTSHVPHLMASLVAGTLAAAPPEHLALSGTGVRDVTRVAGGDPRLYSQIIGGNAVEVAALLTEVRARLDLVLEAVTAQDRVGLESLLGHGQAGTRAIPGKHGAAPQPMTAVRVALPDEPGGLARLFADAGASGVNIEDVRIDHDPGRPVGLVELDVVADRAEQLLVVLESKGWDTHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4K8</accession>
    <name>A0A0Q8V4K8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19415</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893459.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49057">
        <property type="protein sequence ID" value="KRC49057"/>
        <property type="gene ID" value="ASE19_19415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1774567at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="65"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="65"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC49057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="197" mass="20435" checksum="15AFD9A3EB1BA17C" modified="2016-01-20" version="1">MTDFDDRIGPALRDRLRTEQPDLEHLATASLRAGLRLRRRRRVATVAGGTAAFAVVGVGVAVTQGGSSTTARDHDFADTPTAPTTASATVTADPEDAAGLPTGEPANAAPFTIDAPGWSCGDYLDEKIPCTKDDSFVSINVRPAAEHDAWASDPDKGGSSLWVSPVHGDFFVSVQGGAGSLSQTDLTALIDGITFAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5M2</accession>
    <name>A0A0Q8V5M2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Fibronectin type-III domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_09985</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894676.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52741">
        <property type="protein sequence ID" value="KRC52741"/>
        <property type="gene ID" value="ASE19_09985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="966287at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="SSF49265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359720" description="Fibronectin type-III domain-containing protein" evidence="3">
        <location>
            <begin position="33"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="4">
        <location>
            <begin position="343"/>
            <end position="428"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="428" mass="43826" checksum="6A052D4834196C17" modified="2016-01-20" version="1">MRTSLRRVLAATTAGLVAGGLAITTSILPTEAAITTAVTPSRIIRWTELSGLPTIAPDGTLYVGYGPISVWAPGSNGRPTVVKEFTGMSVSGQPTYLAGSGLAWADSSGARAVVMDPAQAGGAFVATRTITGAATKLESPTAAAWASDGSLWVVDSKIDGVDGYEFLRFAPGANGNAAPVQRIGGSNSGFVYTGSTTGFDTPFITALPGHGLAASPAGVRPSISIFTGSQSGNVKPARTIRVATPTPSFLAEGIAADSSGRIYIGAGDLHGDRYGFLQVYSSAGTKLLELSGVRQDLRIPLAPSVTPAGTLSVVNATIIELGSTQYTDAQVEVYKPLFAKASAVRSLKVTRTATTQTVSWLAPTNKGGTTPSYRVVVRKGTTTVLTRTVTATRLAIARRALPKGTLKVTVAPVNAGGVGPAVSKLFTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5X5</accession>
    <name>A0A0Q8V5X5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09425</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894586.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52648">
        <property type="protein sequence ID" value="KRC52648"/>
        <property type="gene ID" value="ASE19_09425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1613798at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="154" mass="15644" checksum="026112C49F0E4F8E" modified="2016-01-20" version="1">MKALVPGTLALLPSYASIEDPVAPLRAACLDAVGRLGPRVRIVSSAATGGSGARVGAALVAAGGGTVVESGETGVLVVGNGSATRTEKAPGHLDERAAAFDEALRASFAGVDLELAEELWADAACLRDLPPLADAEVLYDDAPYGVQYWVAVWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V601</accession>
    <name>A0A0Q8V601_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Lysine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Lysyl-tRNA synthetase</fullName>
            <shortName evidence="9">LysRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">lysS</name>
        <name evidence="11" type="ORF">ASE19_10390</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys)</text>
            <dbReference type="Rhea" id="RHEA:20792"/>
            <dbReference type="Rhea" id="RHEA-COMP:9696"/>
            <dbReference type="Rhea" id="RHEA-COMP:9697"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78529"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.6"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.6" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894747.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52814">
        <property type="protein sequence ID" value="KRC52814"/>
        <property type="gene ID" value="ASE19_10390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="256927at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004824">
        <property type="term" value="F:lysine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006430">
        <property type="term" value="P:lysyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00177">
        <property type="entry name" value="Lys_tRNA_synth_class1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020751">
        <property type="entry name" value="aa-tRNA-synth_I_codon-bd_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008925">
        <property type="entry name" value="aa_tRNA-synth_I_cd-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002904">
        <property type="entry name" value="Lys-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042078">
        <property type="entry name" value="Lys-tRNA-ligase_SC_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37940">
        <property type="entry name" value="PTHR37940"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01921">
        <property type="entry name" value="tRNA-synt_1f"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48163">
        <property type="entry name" value="SSF48163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00467">
        <property type="entry name" value="lysS_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="177"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="9">
        <location>
            <begin position="49"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="9">
        <location>
            <begin position="322"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC52814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="570" mass="62565" checksum="04FCB5234D1D61E5" modified="2016-01-20" version="1">MRLVARGQQNQQDPADWVTRTADLALRHAEQVNGGTLPDLVTCASGISPSGPIHLGNLREFLTVHFVAEEIRRRGINVRHLQSWDDYDRFRKVPAGVDTAWNEHIGRPLSAVPDPTGEFANWGERYKAPLRAALADLGCDMVEVNQTEIYRAGTYREQILTAIRKRGEIETVMSRFRTKKSESVDGEGAEGEESTAEEDAGHGASEDLARFPYKPYCRGCGRDTVTLTSYDDETTDLAYTCDTCGESFVTNVATQDEGKLVWKVDWPMRWTFEGVHFEPGGVDHATPGSSYTVGKEIVGPIFGGTAPSFVGYSFVGVAGMPKMSSSKGGVPTAAEALRILEAPILRWLYVRRQPKQAFNVDFGQEVLRLYDEWDALTKKAAIPEKRDAAVLAWERASATSTAGALPTPSVVVPFRMLSSVADVTAGSREITARTVGATEADLEPRLTKAATWITAYVDPEDRTTVREEADAARLAGLGEDEELWLRQLLDRLPDSFADSDELTTLIYGVPKLARGLALEDAPTDEVKADQKAFFKLLYELLVAAERGPRLPTLFAALGPEKVRALLTPQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V639</accession>
    <name>A0A0Q8V639_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SLT_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09915</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894663.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52728">
        <property type="protein sequence ID" value="KRC52728"/>
        <property type="gene ID" value="ASE19_09915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="710313at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043426">
        <property type="entry name" value="MltB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031304">
        <property type="entry name" value="SLT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30163">
        <property type="entry name" value="PTHR30163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13406">
        <property type="entry name" value="SLT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SLT_2" evidence="1">
        <location>
            <begin position="169"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="253" mass="26066" checksum="0815C7048A0B8E2B" modified="2016-01-20" version="1">MTRDRAFLVAIGAVTLGLAVLTGLIVAVAYAGQGDTLPPPARTGPVGGPTAAATVGRAQGQSGVVADPYRPDDAWLARTSAATSIPVRALSAYARAHLQVAAEQPDCKVAWNTIAALGGIESAHGSIHGSVLGTDGYPRPAIRGPALDGGAFGSVHDTDGGSLDGDTRWDRAVGPLQFIPSTWETWAADANGDGIADPNQIDDAALAAGRYLCHSGELDSPEAWRQAVFSYNHSDAYVADIAQLANTYAERAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6D9</accession>
    <name>A0A0Q8V6D9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pirin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_09850</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the pirin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917954.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52719">
        <property type="protein sequence ID" value="KRC52719"/>
        <property type="gene ID" value="ASE19_09850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="833478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012093">
        <property type="entry name" value="Pirin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008778">
        <property type="entry name" value="Pirin_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003829">
        <property type="entry name" value="Pirin_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13903">
        <property type="entry name" value="PTHR13903"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02678">
        <property type="entry name" value="Pirin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05726">
        <property type="entry name" value="Pirin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pirin" evidence="3">
        <location>
            <begin position="39"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="Pirin_C" evidence="4">
        <location>
            <begin position="190"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="333" mass="35499" checksum="FCF25E2CEEE0B701" modified="2016-01-20" version="1">MSNPEKDPGEVVCEARPAAGVELMTPREVPLGGPRAMAVRRTLPQRHRSLIGAWCFLDHYGPDLVSESGGMEVAPHPHTGLQTVSWLFTGEIEHRDSAGNVAMVRPQEVNLMTAGRGISHSEVSTPGTTVLHGAQLWVALPDAARDTDPGFQHYAPEQVAGEGWRAHVFLGSLLGDSSPVSTFTPLLGAELVLDPGATVRVPVDPAFEHGVLVDLGSVTVGDLDAKVADLAYVPTGAEEICLVAGDEGARLLVLGGPPFGESIVMWWNFVGRTHDEIVEYRAAWQAQITDPATGEVLPDSRLVAAGRFGVVPDQALRPIPAPGLPNARLKERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6F1</accession>
    <name>A0A0Q8V6F1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Sulfate ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_09950</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Part of the ABC transporter complex CysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">The complex is composed of two ATP-binding proteins (CysA), two transmembrane proteins (CysT and CysW) and a solute-binding protein (CysP).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894670.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52735">
        <property type="protein sequence ID" value="KRC52735"/>
        <property type="gene ID" value="ASE19_09950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1110665at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015419">
        <property type="term" value="F:ABC-type sulfate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005667">
        <property type="entry name" value="Sulph_transpt2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30406">
        <property type="entry name" value="PTHR30406"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00969">
        <property type="entry name" value="3a0106s02"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0764">Sulfate transport</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="75"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="107"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="142"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="255"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="10">
        <location>
            <begin position="69"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC52735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="282" mass="30401" checksum="EDD8DD05510A72C1" modified="2016-01-20" version="1">MADTREIRARKGPVTYLLRIFVITYLAVLVIWPLYEVGKQTFAPTKEGAEGGISAFLERLSDPSVSYAFNLTGTVAFWAVLINTLFGVGISLLIVRYQFPGRRILSVLVDLPMSVSPVVVGLALVLAYSTGKGWFGEALEGVGIFIIGTTPGLIMATAFVSLPLVIREIVPVLEEIGTDAEMAASSLGASGWQTFRRITLPSIKWAVIYGVVLSMARSLGEFGAVKIVSPGAELRGETATLLIQNRYTNYEEPTAYAAAFVLVLASVLALVVVSLIRKEDHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6R3</accession>
    <name>A0A0Q8V6R3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">3-hydroxybutyryl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_11060</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894869.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52936">
        <property type="protein sequence ID" value="KRC52936"/>
        <property type="gene ID" value="ASE19_11060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="862072at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022694">
        <property type="entry name" value="3-OHacyl-CoA_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006176">
        <property type="entry name" value="3-OHacyl-CoA_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006108">
        <property type="entry name" value="3HC_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00725">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02737">
        <property type="entry name" value="3HCDH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000105">
        <property type="entry name" value="HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3HCDH_N" evidence="3">
        <location>
            <begin position="7"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="3HCDH" evidence="2">
        <location>
            <begin position="187"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="1">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000105-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="284" mass="30164" checksum="CAA7497773453EE7" modified="2016-01-20" version="1">MTNIERVGVVGGGLMGSGIAEVSARAGKDVIVAESSPAAADAARARLEASLKRAESRGKITSADEVLARIRVVDDLTALADRDLVVEAIVEDEQAKTGLFRQLDEIVTSPDAILASNTSSIPIMKLAVATSRPTHVLGVHFFNPVPVLSLVELVPSLMTDEATTERARAFVQDDLGKHAIDCQDRAGFVVNALLIPFILSAIRMFESGFASAEDIDQGLVQGAAHPQGPLALADLIGLDTVKAVAESLYEEFKEPLYAAPPLLARMVEARLLGRKSGRGFYTYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6T7</accession>
    <name>A0A0Q8V6T7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15545</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50033">
        <property type="protein sequence ID" value="KRC50033"/>
        <property type="gene ID" value="ASE19_15545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1944017at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="103" mass="11168" checksum="C4AE70BD500D9E40" modified="2016-01-20" version="1">MDPNAPRKAPDPKDIERLARVQRRVMSVLLVTTVLHLSAGLVIAADHVAADRTDARVGLSVIASAFMIGGIAATLIINHRSWKSPWLLLGLVPSIVGIWWTVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6U3</accession>
    <name>A0A0Q8V6U3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">L-arabinose isomerase</fullName>
            <ecNumber evidence="6">5.3.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">araA</name>
        <name evidence="8" type="ORF">ASE19_11240</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the conversion of L-arabinose to L-ribulose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>beta-L-arabinopyranose = L-ribulose</text>
            <dbReference type="Rhea" id="RHEA:14821"/>
            <dbReference type="ChEBI" id="CHEBI:16880"/>
            <dbReference type="ChEBI" id="CHEBI:40886"/>
            <dbReference type="EC" id="5.3.1.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="6">Binds 1 Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the arabinose isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.4" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894901.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52968">
        <property type="protein sequence ID" value="KRC52968"/>
        <property type="gene ID" value="ASE19_11240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="507566at2"/>
    <dbReference type="UniPathway" id="UPA00145">
        <property type="reaction ID" value="UER00565"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008733">
        <property type="term" value="F:L-arabinose isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019569">
        <property type="term" value="P:L-arabinose catabolic process to xylulose 5-phosphate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10940">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00519">
        <property type="entry name" value="Arabinose_Isome"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024664">
        <property type="entry name" value="Ara_Isoase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038583">
        <property type="entry name" value="AraA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004216">
        <property type="entry name" value="Fuc/Ara_isomerase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009015">
        <property type="entry name" value="Fucose_isomerase_N/cen_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003762">
        <property type="entry name" value="Lara_isomerase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38464">
        <property type="entry name" value="PTHR38464"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11762">
        <property type="entry name" value="Arabinose_Iso_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02610">
        <property type="entry name" value="Arabinose_Isome"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001478">
        <property type="entry name" value="L-ara_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50443">
        <property type="entry name" value="SSF50443"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53743">
        <property type="entry name" value="SSF53743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0054">Arabinose catabolism</keyword>
    <keyword evidence="5 6" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4 6 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3 6" id="KW-0464">Manganese</keyword>
    <keyword evidence="1 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Arabinose_Iso_C" evidence="7">
        <location>
            <begin position="369"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="312"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="339"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="356"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="455"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF11762"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="507" mass="55189" checksum="6483DEE96BC7A5AD" modified="2016-01-20" version="1">MTTNASTASATEQEVWFLTGSQSLYGPETLQQVADQSRAIADRLAELSDLPVSVVWKPVLLDAGAIHRQVLEANLDPSCVGLIAWMHTFSPAKMWIAGLDALQKPLLHLHTQAGVALPWSTIDMDFMNLNQAAHGDREFGYIQSRLGVPRKTVAGHVENPVVRRRIEEWARAARGRAELRQLKLARFGDNMRDVAVTEGDKVEAQLRFGVSVNTYGVNDLVAVVDQVADADIDKLVAEYADLYAIAPELLPGGERHESLRYGARIEAGLRTFLEEGAFGAFTTNFEDLGGLRQLPGLAVQRLMADGYGFGGEGDWKTSVLLRATKVMAEGLPGGTSFMEDYTYHLVPGEEKILGAHMLEVCPTLTEDRASLEIHPLSIGGREDPVRLRFTADPGTAVVAGLSDLGGRFRLTVNEIDVVEPDEALPQLPVACAVWEPRPSLATSAEAWLMAGAPHHTVLSKAVGIEVLADFAEMNGVEIAVIDADTTPRGFQRELRWSAAYHRLAEGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6W7</accession>
    <name>A0A0Q8V6W7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SnoaL-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12100</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895045.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53118">
        <property type="protein sequence ID" value="KRC53118"/>
        <property type="gene ID" value="ASE19_12100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1644255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13474">
        <property type="entry name" value="SnoaL_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="34"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="16771" checksum="7CE93C38064A7401" modified="2016-01-20" version="1">MKPLTVYPVVTAEDAATFESKVRRFLVDFERGFDAGASWYSRDQRVRIWDGSPVAAPGYDAYAAAARTWLDEEVESLSDIVEDVVVLRDPSGGLAVTIVILRNVGNLRNGERFEYRMRETLVWGRAGDDWRVIHEHTSPLPSPVENSTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V720</accession>
    <name>A0A0Q8V720_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cholesterol oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12810</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895699.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53237">
        <property type="protein sequence ID" value="KRC53237"/>
        <property type="gene ID" value="ASE19_12810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="365211at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="2">
        <location>
            <begin position="12"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="domain" description="GMC_oxred_C" evidence="3">
        <location>
            <begin position="473"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="418"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="535"/>
            <end position="564"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="588" mass="63382" checksum="94B1713C8C644D65" modified="2016-01-20" version="1">MPDVQRAGSHFDVVVIGSGFGGSVTALRLTEKGYRVAVLEAGRRFEDDEFAKTSWNVRRFLYAPRLGCFGIQRIRLLRDVVVLAGAGVGGGSLVYANTLYEPASDAFYNDPQWKHITDWKAELAPYYDQAKRMLGVVENPTVTASDEIMKEVADEMGVGHTYRPTPIGVCFGAGGEKQPGQAIPDPYFGGAGPERRGCIECGECMTGCRHNAKNTLLKNYLYLAEKAGAEVRDRTTVSGIRPRPGGGYHVVTHTSGRSARRQQVISADQVVLAAGTWGTQELLHGMQRSGELPHLSDRLGHLTRTNSEALCASSTKMHNKGKHDFHHGVAITSSIHPDPVTHVEPVRYGKGSGLMGMLLTVMTDGGGRTPRWLKWIGQALRHPLLLLSCLGGLGSWPERTIIALVMQTSDNSITVFPKNGRPGRRARLTSKQGHGEPNPTWIPAGNDVVRRISDKIDGGSYSTVGEIFNIPMTAHFLGGCAIGETAETGVIDPYHRVHGHPGLHVIDGAAISANLGVNPSLTITAQAERALSLWPNKGEQDPRPEPGQAYQRLTPVPPARPAVPPTAPAALRLPLYVVESVAAEEATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V749</accession>
    <name>A0A0Q8V749_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_12995</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895731.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53269">
        <property type="protein sequence ID" value="KRC53269"/>
        <property type="gene ID" value="ASE19_12995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2033473at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004776">
        <property type="entry name" value="Mem_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03547">
        <property type="entry name" value="Mem_trans"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="34"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="64"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="92"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="122"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="157"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="192"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="223"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="254"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="286"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="306" mass="31353" checksum="192D31CF099F8043" modified="2016-01-20" version="1">MGGVLEGFVTIAIVIALGALLAHVGIVDAKGQRSLSLTAFYLASPALLVTVLEDSDPSRVLSGPLVATAAGVVVSAGIMVAIAVWRRLDQGTAVIAMLCSAYVNAGNLGIPIAAYALGDAALVVPALMMQLLVLQPLALTVLDVVTSPERPSLGKILSRPVTNPLTIASFLGLALAITDTELPEVAHRPLELVGGMAVPAMLIAYGVALRLGPLPGRGVTPRALATVSLLKMVVQPVAAYLVGRFVVGLGDHDLFAVTLLSALPTAQNVFVVATRYDRGILLARDAIFVTTLASAPVAVLIAALLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V865</accession>
    <name>A0A0Q8V865_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">SSD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_13225</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895773.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53311">
        <property type="protein sequence ID" value="KRC53311"/>
        <property type="gene ID" value="ASE19_13225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="149255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="219"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="244"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="270"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="305"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="345"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="405"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="575"/>
            <end position="594"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="601"/>
            <end position="623"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="635"/>
            <end position="662"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="683"/>
            <end position="703"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="715"/>
            <end position="739"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="8">
        <location>
            <begin position="236"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="764"/>
            <end position="790"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="790" mass="82440" checksum="07A323F7A9DDC3F8" modified="2016-01-20" version="1">MARLLAKLGSTAYRRWPFFIAAWLMLAVVVGGLAGTVAKPFTDEFSIPGIPSEKAAQIQKELFPASGDAFDDASVNVVLVAPDGHTLDDQTYGPVVADLVDDIRALPQMSDDAAANPSLGNPVELADAQRSAYVDRAKAADGDVAAAKADAAAVSPSAEGGRVGLMTFSWDVKTPADVEQASIDQLDEALDAARDAGLTAEVNGAGSKTQPEMGMTSELIGLAVALVVLVLTFGSLVSAGMPLVTAVMGVGIGLSGVTAMTALMDLNSSTTMLASMIGLAVGIDYALFILARYRTELHHTDDREHAIGIAVGTAGSAVVFAGLTVLIALSALAVVNIPFLTAMGLAAAATVFVAVLVALTLLPAVLGMLKSKAFGGRVRRYQPRRDESGQILNNGVRWARTVGRYPVAFAAVVVIGLGALAVPLKDLHLAFPTDSTAAPATTQRQASDLISEHFGPGREGPLLAVVDATDVAEGGRDRAFDDVTGWINGLPDVANAQVVATNATYDADGNQTAAATGAMIQVTPSSGPDETATQDLLLALRDGQAGIESDTGTTIGITGLTAITTDISDRLSSALPIYLAIVIGLAFLLLMLVFRSILVPLTATLGFLLSVLATLGATVAVFQEGMFGLFEPQPIVSFMPIFLIGLVFGLAMDYQVFLVTRMREAHVHGMSTREAVVDGFRNSARVVTAAATIMIAVFAAFMLQSEPIVQSMGFALASAIVFDAFIVRLVLIPATLYLLGEKAWWLPKWLDRVLPNVDVEGESLERHPASAGPTGDLDDDLDQDRELAGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8D4</accession>
    <name>A0A0Q8V8D4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12455</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895210.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53653">
        <property type="protein sequence ID" value="KRC53653"/>
        <property type="gene ID" value="ASE19_12455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1929695at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="45"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="75"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="127" mass="13829" checksum="C8617780B4867149" modified="2016-01-20" version="1">MTERVRVTGPPRHQAAGRASSRLGDVHEQTALGDVYLRSLLREQLGLALTVLTALTSTLGVLPLAFHLWPSLSSVAVVGVPLAWLVLGVLVYPFLLLLGWRYVCRVERNERDFADLVGGGSDEPETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8G1</accession>
    <name>A0A0Q8V8G1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897141.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53685">
        <property type="protein sequence ID" value="KRC53685"/>
        <property type="gene ID" value="ASE19_14200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2015126at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="17"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="73" mass="8105" checksum="FDD9CF318576BF2A" modified="2016-01-20" version="1">MTTTDGSPQQRSWLQDLVIVGVWLALPYLVVGVFWADAHREHLSELHGLDATASYVGELIAWPVLIFADVSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8Q1</accession>
    <name>A0A0Q8V8Q1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17270</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893807.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50338">
        <property type="protein sequence ID" value="KRC50338"/>
        <property type="gene ID" value="ASE19_17270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1942216at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000424">
        <property type="entry name" value="Primosome_PriB/ssb"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00436">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50935">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="113" mass="12544" checksum="D327154ECE4A3791" modified="2016-01-20" version="1">MERNVVHLAGRLSGEPEVRTLPSGDELCVCRIVVARDEVKTLPSGRRTPSVDVVDLAAWASRPRRTMAGWHDGDEVEIEGALRRRFFRAGERTMSRVEVEVSGCRVTRRAGSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8U8</accession>
    <name>A0A0Q8V8U8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">NAD-dependent succinate-semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_14740</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896923.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53579">
        <property type="protein sequence ID" value="KRC53579"/>
        <property type="gene ID" value="ASE19_14740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="384611at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="4">
        <location>
            <begin position="24"/>
            <end position="483"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="489" mass="51132" checksum="9D641D7F9DE7090C" modified="2016-01-20" version="1">MTFRERLGHLLPESHRQLYVGGQWVPGGGGGRIDVIDPADGSVLTDVADGTLDDARAALDAAVAAQADWAATPPRERAEILRRAFDLVTRHADDLALVMSLEMGKPIAEAKGEVTYGAEFLRWFSEEAVRIHGRWMHNPAGGSRLLTVRKPVGPCLFITPWNFPLAMGTRKIGPAIAAGCTMVVKPAAQTPLTMLLLGVLLAEAGLPAGVLNIVTTSDSGGLSSTLQADPRLRKVSFTGSTSVGKKIVEQSAGELQRVSMELGGNAPFLVFADADLDAAVDGAMIAKMRNMGEACTSANRFLVEASVAEEFGAKLAERMGGLRVGRGQDVGVQVGPLIDEKAVASVSATVADAVARGARVLTGGSAPSGSGYFYEPTVLVDVPAEADAVTKETFGPVAPITTFTSEDDAIALANATEYGLAAYAYTRDLARTIRLAERLETGMLGINTGLVSNPAAPFGGVKASGFGREGGFEGIEEYLDTTYVALPVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V969</accession>
    <name>A0A0Q8V969_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Carrier domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_07365</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895325.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53893">
        <property type="protein sequence ID" value="KRC53893"/>
        <property type="gene ID" value="ASE19_07365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1943389at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006162">
        <property type="entry name" value="Ppantetheine_attach_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00012">
        <property type="entry name" value="PHOSPHOPANTETHEINE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carrier" evidence="4">
        <location>
            <begin position="1"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="3">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="85" mass="9032" checksum="F73A1E538373C735" modified="2016-01-20" version="1">MNEVETRIVAIVTELLERSDREDLTVTLESRLHGDDGLGLDSLQTAELSAILEDELGTDPFGAGLLPETVGEVVAFYADQAAASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9A4</accession>
    <name>A0A0Q8V9A4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">CCA tRNA nucleotidyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13935</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897147.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53679">
        <property type="protein sequence ID" value="KRC53679"/>
        <property type="gene ID" value="ASE19_13935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2018439at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031123">
        <property type="term" value="P:RNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05398">
        <property type="entry name" value="NT_ClassII-CCAase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006675">
        <property type="entry name" value="HDIG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002646">
        <property type="entry name" value="PolA_pol_head_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032828">
        <property type="entry name" value="PolyA_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014065">
        <property type="entry name" value="tRNA_adenylyltransferase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01743">
        <property type="entry name" value="PolyA_pol"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12627">
        <property type="entry name" value="PolyA_pol_RNAbd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00277">
        <property type="entry name" value="HDIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02692">
        <property type="entry name" value="tRNA_CCA_actino"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HD" evidence="4">
        <location>
            <begin position="261"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="392"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="479" mass="53622" checksum="9E3744973888730E" modified="2016-01-20" version="1">MRLVDVQAAVGAELDRIAPVIDELGALFAEAGHELALVGGPVRDAMLGRPSNDLDFTTSARPEQMDKLLRAWGDAWWDMGREFGTIGCRKGDWVVEVTTYRSESYDPDSRKPEVRYGDSLAGDLGRRDFTVNAMAVRLPGREIEDPYGGVVDLAHQVIRTPGTPEQSFSDDPLRMMRAARFAAQLGFAVDPSVVRAMTEMADRIGIISAERVRDELVKLICAPHPRLGLALLVETGLADRVLPELPALKLERDEHHRHKDVYEHTLTVLEQAIDLEPRLSERSDLPAGPDFVSRFAALMHDVGKPRTRRFQDDGAVTFHHHDVVGAKLTRKRMKELKFSNDEIAAVGELVELHLRFHGYGSGEWTDSAVRRYVRDAGDQLERLHVLTRADCTTRNKRKADRLRRTYDDLEARIDLLSAEEELASIRPDLDGNQIMGILGIGPGREVGEAYKFLLELRLDNGPMSEEAATAALKEWWAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9J7</accession>
    <name>A0A0Q8V9J7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Acetyl-CoA acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_06815</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895234.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53803">
        <property type="protein sequence ID" value="KRC53803"/>
        <property type="gene ID" value="ASE19_06815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="550338at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="5">
        <location>
            <begin position="275"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="2">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="353"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="397" mass="41430" checksum="DCB7571CABB641E1" modified="2016-01-20" version="1">MIDAVIVDAVRSPMAKGKAGGALSSLHPVELLAQTVKGLLDRVGIDPGQVDDVLTGCVSQVGEQAGNVGRMAWLAAGLPIHVPSTTVERKCGSSQQAAHFAAQGVMAGAYDIAVVAGVESMSRIPMGASAIGMDPYGPSVAQRFAPGLIPQGISAELIAAKWKLSREQQDAYASNSHARAAARQADGGFQREIVPIVVTDEAGNEVVVDRDETIRPSTTPAKLAELKPAFENPAHLERFPEIDWSVTAGNSSQITDGASAMLVMSATRAEQLGLTPRARFHSFAVAADDPILMLTGPIPATHKLLAKAGIGIDDIDHYEINEAFAPVPLAWQSEFDADPARLNPAGGAIALGHPLGGSGARLMTTMLHALEDTNGRFGLQSMCEAGGMANATLIERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9M5</accession>
    <name>A0A0Q8V9M5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08165</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895469.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54037">
        <property type="protein sequence ID" value="KRC54037"/>
        <property type="gene ID" value="ASE19_08165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275789at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="256" mass="26189" checksum="AA25594AEAB3F6BC" modified="2016-01-20" version="1">MTLVRYEHADGVARITLVDGDNGNPVHLESVAALHDAVRSAHRDGARVIVLAAEGRFFSVGGDLGAFAGADDVSAFIDDLAESLHRVVSELVRSDAIVVSVVQGTAAGAGFPLAAVADIVLAADTAKFSLAYTKVGLSPDGGSSLLVHTLGLHRALRLAILGDLLTAQEAHAAGLVARVVPADELAATAEQVVATLAAGSGAANAAAKRLLRDVVAPAPETALRKETLSIRRLAGSPDGREGVSAFIEKRAARFNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9S5</accession>
    <name>A0A0Q8V9S5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Adenylyl-sulfate kinase</fullName>
            <ecNumber evidence="1">2.7.1.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">APS kinase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">ATP adenosine-5'-phosphosulfate 3'-phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Adenosine-5'-phosphosulfate kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">cysC</name>
        <name evidence="4" type="ORF">ASE19_07140</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the synthesis of activated sulfate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>adenosine 5'-phosphosulfate + ATP = 3'-phosphoadenylyl sulfate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:24152"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58243"/>
            <dbReference type="ChEBI" id="CHEBI:58339"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.25"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite from sulfate: step 2/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the APS kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.25" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53855">
        <property type="protein sequence ID" value="KRC53855"/>
        <property type="gene ID" value="ASE19_07140"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00140">
        <property type="reaction ID" value="UER00205"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004020">
        <property type="term" value="F:adenylylsulfate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070814">
        <property type="term" value="P:hydrogen sulfide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000103">
        <property type="term" value="P:sulfate assimilation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02027">
        <property type="entry name" value="APSK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00065">
        <property type="entry name" value="Adenylyl_sulf_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002891">
        <property type="entry name" value="APS_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023485">
        <property type="entry name" value="Ptyr_pPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036196">
        <property type="entry name" value="Ptyr_pPase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01451">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00226">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52788">
        <property type="entry name" value="SSF52788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00455">
        <property type="entry name" value="apsK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="LMWPc" evidence="3">
        <location>
            <begin position="438"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="406"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="406"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="229"/>
            <end position="236"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="619" mass="65888" checksum="90CF39A8DED931A5" modified="2016-01-20" version="1">MSSPSVPQHCPSPRELDDLELLTSGAAGPIVAFNEPGSPITLALPEALETHLDEGHPIELVDPEGLPLARVERTLRGLSVEPLTHAQFGPFRNLHVPPDTARERYAGRTVVPVTDLVTDTQLAQLQELGPVLLAALVGAGTPAVSPVGLLRATVRVAGMLDAEVVAIPLTDHGSDTDAALRQSVLAWYAGADDLVELEPGGTTLPELADIAAQERPAPADQGLVLFFTGLSGSGKSTLARALMDRILEQGARTITSLDGDVVRRNLSAGLTFSKADRETNIRRIGWVAAEIARHGGVAICSPIAPFDETRQQVRAMVEQAGGRFFLVHVATPLEECERRDRKGLYAKARRGEIPEFTGISSPYEEPEDADVRVDTTGRTIEEALDDVVAGLVADGLMDLSTPAVPTTAKASASAPRTSATRALADTAAPPASTDGNPLRVLFVCTANICRSPYMELRARTLLAGRTDVEFISAGTHGFRAHRVDATMATVLADRGVDDDLVEQFASRRLTRELVNEADLVLTAEASHREFVLEEAPGAFRKAFTLGQFAESVGRVDASLTGTSLVTAVGHRRAGAVDAHDIRDPYRRGRSAAEASADQIDALLQAVLPRLSPSETGNHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9T1</accession>
    <name>A0A0Q8V9T1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_07310</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53883">
        <property type="protein sequence ID" value="KRC53883"/>
        <property type="gene ID" value="ASE19_07310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="75610at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032109">
        <property type="entry name" value="Big_3_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032179">
        <property type="entry name" value="Cry22Aa_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16640">
        <property type="entry name" value="Big_3_5"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16403">
        <property type="entry name" value="DUF5011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos" evidence="1">
        <location>
            <begin position="53"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5011" evidence="2">
        <location>
            <begin position="530"/>
            <end position="594"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="3">
        <location>
            <begin position="612"/>
            <end position="693"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="3">
        <location>
            <begin position="708"/>
            <end position="776"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="785" mass="83386" checksum="9AAAEDB4A66EDF8B" modified="2016-01-20" version="1">MLNGVVRAPMVDDGTVHLLVLGTDPFADDLAPRDASAAADKDHFEDPSDYDFSLAHFTDTQYLAEGAAGGTYDDWDGTAEASDVMHEEERAIWAAAYNASTRWIKEQAGPRKIAYAGHTGDIIENDYYNPLATNGTGGLLYPGLDAQVTREFEFTSGAQATLDDAGIVNQVIAGNHDNQLGQETGPTSRFNQYYGPNRYYDASSSWPAGASYHAWDETTDSQGATTTRGLDNQNNYVLFSAGGLDFVAVGLSYGVTQAEADWADSVFKRYPDRNGILLTHAYIAPSSAPDGRGATFSGDGSKLYDEVVEANPNVFLILAGHEHGVGTNLKTGVGASVHHNVVELLADYQFYTVPASELWPGKVDGAGNIDLDGDGTTDHKATDQLQFGASWLRLLQFDVDRAEVSIDTYSPHFDDFGATEYDTRHRYNGAEDNLVLPVDLTTRTTSFTTDGLTVVTPTDAVIGEDTARSGWPASVEWSGLAQGEVYAWTAESRTTSGDRVGAIRQFGTVFRATAAGTDRTAPTVQLPGATQVTVGESFDPLAGVTATDDTDGDVTDRIQVVGSVDVATPGSYALTYVVADTNGNQVVVPRVVTVVAPVDERAVTSVSVSNVSVDFGKALRLKATVSPAAATGKVRFLNGEEVLCEAMLAKGIATCTVKTLPPPGSYVITALYDGSASHRPSQWTFVLTVRPKAKADPRLAARAVSSVVARGKPAVLRATLATGATGRVTFASGGRTLCVATIRSGTATCTTARTLRAGTYQVRASYAGNASYTSDSAVFRFTKRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAM4</accession>
    <name>A0A0Q8VAM4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_10980</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52921">
        <property type="protein sequence ID" value="KRC52921"/>
        <property type="gene ID" value="ASE19_10980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Protein kinase" evidence="7">
        <location>
            <begin position="14"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="215" mass="22989" checksum="383C28D82B286EBA" modified="2016-01-20" version="1">MVPLPPDPDELGPYRIERRLGQGGMGTVYDAVDTTLDRHVALKLITPERADDPDFRLRFGREARAQAALDSPHVVQVFAHGEVGGRLYIASQLVPDGDLGGWLRRGALPADLAVRVVAQVADGLAEAHRVGVVHRDVKPSNVLLRKRGPDVVALLADFGIADRIGGAAPAEDVQALARLLETVLPGRRTRTVRRVLHAALAGEPSAAEVRDALAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAS3</accession>
    <name>A0A0Q8VAS3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glutamate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_07470</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the glutamate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54196">
        <property type="protein sequence ID" value="KRC54196"/>
        <property type="gene ID" value="ASE19_07470"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015930">
        <property type="term" value="F:glutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006537">
        <property type="term" value="P:glutamate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02808">
        <property type="entry name" value="GltS_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024188">
        <property type="entry name" value="GltB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002932">
        <property type="entry name" value="Glu_synthdom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01645">
        <property type="entry name" value="Glu_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006429">
        <property type="entry name" value="GOGAT_lg_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glu_synthase" evidence="3">
        <location>
            <begin position="118"/>
            <end position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR006429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="501" mass="54358" checksum="7BA09C4787852CC1" modified="2016-01-20" version="1">MQKKHALQRNFPVIGHARYWLETIGPELRQYIVTSNEEERPFSRDQRTWIYASSKEQNSYFGFGTDVDVEHTQGHAYIKQRTFADKLPSDQDHNWTLPSAKVLGGPRGRAKAFRPGSVVNVSAMSFGSLSSNAITAINKGAAAAGCLHNTGEGSISPYHRNGADLVVQIGTAYFGCRDENGSFSLPRLKAMLETAPVKALEIKLSQGAKPGLGGLLPAPKVTPEIAEIRGIPEGKDCSSPSRHTAFHDVDSMLDFVEMLAAETGLPVGIKSAVGAMDFWEELARLMEPRQRGVDFITVDGGEGGTGAAPLIFADSVSLPYRMGFSRVYGTFAELGLTDDVTFIGSAKLGLPDNATVAFALGADMINVAREVMLSIGCIQAQKCHTDHCPTGVATQNPWLVRGLDPVSKAERCAVYLRTLRKELTRISAAVGVAHPALITCADVDIFNGDYDARSLASVYGYKDGWGELGPALKEEVLRFMHPQEHFDERGEKTAGREAEQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAT4</accession>
    <name>A0A0Q8VAT4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphogluconate dehydratase</fullName>
            <ecNumber evidence="6">4.2.1.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">edd</name>
        <name evidence="7" type="ORF">ASE19_11345</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the dehydration of 6-phospho-D-gluconate to 2-dehydro-3-deoxy-6-phospho-D-gluconate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>6-phospho-D-gluconate = 2-dehydro-3-deoxy-6-phospho-D-gluconate + H2O</text>
            <dbReference type="Rhea" id="RHEA:17277"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57569"/>
            <dbReference type="ChEBI" id="CHEBI:58759"/>
            <dbReference type="EC" id="4.2.1.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Carbohydrate metabolism; Entner-Doudoroff pathway.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the IlvD/Edd family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.12" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894915.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52985">
        <property type="protein sequence ID" value="KRC52985"/>
        <property type="gene ID" value="ASE19_11345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="193579at2"/>
    <dbReference type="UniPathway" id="UPA00226"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004456">
        <property type="term" value="F:phosphogluconate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046177">
        <property type="term" value="P:D-gluconate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009255">
        <property type="term" value="P:Entner-Doudoroff pathway through 6-phosphogluconate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02094">
        <property type="entry name" value="Edd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004786">
        <property type="entry name" value="6-phosphgluc_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042096">
        <property type="entry name" value="Dihydro-acid_dehy_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000581">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020558">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037237">
        <property type="entry name" value="IlvD/EDD_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43661:SF1">
        <property type="entry name" value="PTHR43661:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00920">
        <property type="entry name" value="ILVD_EDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143975">
        <property type="entry name" value="SSF143975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01196">
        <property type="entry name" value="edd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00886">
        <property type="entry name" value="ILVD_EDD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00887">
        <property type="entry name" value="ILVD_EDD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5 6" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="3 6" id="KW-0311">Gluconate utilization</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4 6" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="621" mass="64833" checksum="99625F1B3255C1AE" modified="2016-01-20" version="1">MPEIPLHPVLADVTRRLTERSAATRTAYLARVREAATRGPARGRLACANLAHGFAASEGPEKVELARGQKPNLAIVTSYNDMLSAHQPYGEYPPVLKDAVIRAGGLAQVAGGVPAMCDGVTQGRDGMQLSLYSRDVIAMSTAIALSHDMFDGALLLGVCDKIVPGLLIGALSFGHLPAVWVPAGPMASGLPNKEKARVRQLFAEGKVGREELLEAESASYHSKGTCTFYGTANSNQLLMEVMGLHLPGSSFVNPDNPLRDALTREAAAVAVRRTQQYDASPALGEMVDEKVILNACVALLASGGSTNHTLHLVAIARAAGVLLTWDDLADLSAVVPLLARVYPNGAADVNHFHAAGGIGYLVRTLLDAGLLHEDVETIVGHGLRRYTEEPVLIDGELTWRPGPAQSLDLDVLRPATDPFSADGGVKVVRGPLGTGVVKTSAVAPEHRFVSAPAMVFDDQHDFLLAFADGKLDGIDLVAVIRYQGPAANGMPELHKLTPALGVLQDRGQKVAIVTDGRMSGASGKVPAAIHVTPEAALGGALARVRDGDLVTLDADAGTLSIEADLAHREPTGAAPSGAAWAGTGRELFAAFRATVGPADEGASIFPMPAAAADLEAPLVRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAV0</accession>
    <name>A0A0Q8VAV0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11440</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894931.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53001">
        <property type="protein sequence ID" value="KRC53001"/>
        <property type="gene ID" value="ASE19_11440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1694303at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016857">
        <property type="term" value="F:racemase and epimerase activity, acting on carbohydrates and derivatives"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008000">
        <property type="entry name" value="Rham/fucose_mutarotase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05336">
        <property type="entry name" value="rhaM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="116" mass="13232" checksum="91ABE4477F09255D" modified="2016-01-20" version="1">MPRYCFSLQVRPDRMEEYAERHRAVWPDMLAALEETGWRNYSLFLREDGLLIGYVESDDLVAAQAAMAATEVNARWQAEMAPYFTQLEGAPDEGFVALNEVFHLDDQLARVSSEGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBM2</accession>
    <name>A0A0Q8VBM2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894989.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53059">
        <property type="protein sequence ID" value="KRC53059"/>
        <property type="gene ID" value="ASE19_11765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1933795at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="230"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="284" mass="30869" checksum="8ACF6B48E9FEF04D" modified="2016-01-20" version="1">MVARLEARVGIGDAARQHWYDAQAAIRPREGRPHAVRRSILANALSLIHFDDDADVRDLQRLDQEIGSNQTASLQDEVLAAIDPVPGRPLVTQLVRTLGERAWGKPSRTPGSLTHDDPDLRELCAGAALRLLMVDDGEDDRPLPTLTTEEALLEVFRGGDAGLWRRMVAAALSEPWAGRTEHHLSLLDPDERPGEFQGIQALAGMARRIAEEDERRAVADHIRATIAGTGLTQREFASLVGTSPSRLSTYVTGSVTPSAAMLLRINRMAKRARSSAHGVPDGPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCG6</accession>
    <name>A0A0Q8VCG6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05170</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54856">
        <property type="protein sequence ID" value="KRC54856"/>
        <property type="gene ID" value="ASE19_05170"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2059200at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="34"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="8"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="105" mass="10609" checksum="1022331C4445D3CB" modified="2016-01-20" version="1">MSALLVVAGAGAASADTPEPRPGSWEPKPDVDVLHAFLVLGGIPLLVFVVITLLYVAPALARGADLSPNALEPENQWLGGPRKAAGELAAPDSEDSRAGGAGGSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCK8</accession>
    <name>A0A0Q8VCK8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Acyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_05930</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATP-dependent AMP-binding enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894093.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54981">
        <property type="protein sequence ID" value="KRC54981"/>
        <property type="gene ID" value="ASE19_05930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005324">
        <property type="term" value="F:long-chain fatty acid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004467">
        <property type="term" value="F:long-chain fatty acid-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030310">
        <property type="entry name" value="FadD17/FadD6-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43107:SF15">
        <property type="entry name" value="PTHR43107:SF15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="2">
        <location>
            <begin position="19"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="3">
        <location>
            <begin position="426"/>
            <end position="502"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="539" mass="57571" checksum="8E71E60130D48AF2" modified="2016-01-20" version="1">MADAVADTVQGMLLAHAERDTPGLRYGDDTWTWREVVAGSAARAHVLRSLAGRAAGDGERLHVGALLPNTPEMAFAIAAGAVGGHVTVGINRTRRGAALAADVRRADCRVLLTDAAHLPLLEGLDLGGAIVVDTDGPAWREQVAAAPTTAGDFPVASTMDTFMLIFTSGTSGEPKAVQVANFMVVMAGSVLVDKYGLDATDVVYCSMPLFHSNAVMAGFAVSAASGAALALAEFSASNLIDDVRRYGATYLNYVGKPLAYVLATPERPDDADNPLRFAFGNEASDRDIREFAARFGCSVWDGFGSTESAVIITRTEDTPDGSIGVPFDGVAVYDRVTRQECPRAVRDEDGRVTNLDEAVGELVNTQGAGFFAGYYNDERATAERLDGGMYWSGDLAYRDADGFVFLAGRTDDWLRVDGENLAAAPVEQLLLRHPAVSQAAVYAVADERVGDQVMCALVLRDGAALSPEEFADFLAGQPDLSPKAWPRHVRIATALPSTATNKVLKRELRAQGLTTDDRLWSRGERDHDYLEERACTTSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCR6</accession>
    <name>A0A0Q8VCR6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05440</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894181.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54900">
        <property type="protein sequence ID" value="KRC54900"/>
        <property type="gene ID" value="ASE19_05440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="692608at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041176">
        <property type="entry name" value="VWA_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13768">
        <property type="entry name" value="VWA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18571">
        <property type="entry name" value="VWA_3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="1">
        <location>
            <begin position="42"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="428" mass="45242" checksum="95BB919E4AB9255E" modified="2016-01-20" version="1">MAEFSASVYQNEFLPDGGTDVNAIVTVTCTGAGTAGQSGSGDAGEIIIVDTSGSMAAPTMAAAKDAAQAALAEIVDGTWFAVIAGADRAMLAFPQVSSGPGMVRMDTASRQAASDAISRFVGSGGTAISTWLDLAGQLFASVPEITQRHVLLLTDGENRERPGRLDESINRATGYFQADCRGAGTDWQVAEIRRIAQALLGTVDIIPSPAEMKAQFQEIMRKAMSRGVADASLRVWTPQGAEVLFVRQVSPTVEDLTSRRTPVNPLTGDYPTGAWADESRDYHIAIRVPAKAIGQEQLAARVQLALGADVVTQGLVKATWSSNSELTTRIDQQVAHYTGQAELAQMIQEGLAAKASGDEATATTKLGRAVQLAAETGNDEATSKLKKVVDVENEETGTVRLKRAVEKADEMALDTASTKTTRIRKEPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCU8</accession>
    <name>A0A0Q8VCU8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glycos_transf_1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06320</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894459.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55050">
        <property type="protein sequence ID" value="KRC55050"/>
        <property type="gene ID" value="ASE19_06320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="149"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="340" mass="35535" checksum="C166862E00B50FDD" modified="2016-01-20" version="1">MTLHLLVPERIDDPRRPSGGNVYDRRLAAGLAGRGWPVREHRVGEAGPGEVLAGLPHGVLVLVDGLVASTSPDLVAASGRLRIAVLLHMPGSGPYEPAVLGAVHAVVTTSEWARRWVLDTVGVPAEQVHVAVPGVDAGVTATGSAGGTRLLTVGPIVPAKGYDDLLVALAGLRDLEWHSRWVGAPDLAPSYADTLRERARQLGVDDRIELTGPLSPDDLDAVRAASDLVVAPSRRESWGMALAEGLARGLPAVATDVGGHPEALGTADDDSLPGALVPLDDPVALAGAVRTWLTDGDLRERWRRAAAERAARLGTWAETAERVAGVLNRIAPTPVRTGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCX6</accession>
    <name>A0A0Q8VCX6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05810</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894112.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54964">
        <property type="protein sequence ID" value="KRC54964"/>
        <property type="gene ID" value="ASE19_05810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="895310at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011703">
        <property type="entry name" value="ATPase_AAA-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07726">
        <property type="entry name" value="AAA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_3" evidence="1">
        <location>
            <begin position="45"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_lid_2" evidence="2">
        <location>
            <begin position="238"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="322" mass="35023" checksum="C85102EFFD5B6742" modified="2016-01-20" version="1">MTITHEQATWFAQTFNTLADNIEKAVLGKRHVIKLALTCLLSEGHLLLEDYPGTGKTQLARALANTVQGSNARIQFTPDLLPSDVTGVTVYDQNKGAFEFHPGPIFHTIVLADEINRASPKTQSALLEVMEEGRVTVDGTTHSVGRPFMVIATQNPIEQAGTYRLPEAQLDRFLMKTSVGYPDHESTVRLLLESQVRDRAGQVEPIITAATVAQMSQLADGVHVDPAVVGYVSHLAEESRRHPQVKLGLSARGCLAFVRVAKAWALADGRDHLVPDDIKDLAVPVLGHRLLLDPEAQFNGVTVEQVISSLLEDIAPPTGRVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD72</accession>
    <name>A0A0Q8VD72_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_05900</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894099.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54975">
        <property type="protein sequence ID" value="KRC54975"/>
        <property type="gene ID" value="ASE19_05900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1543022at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359926" evidence="3">
        <location>
            <begin position="24"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="349"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="195"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="195"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="384" mass="38752" checksum="AB0BB6C3CF21311B" modified="2016-01-20" version="1">MTRRLLAVALLAGGLAVLTPTPAATAAARISVTNDRGTTAADLEYRTKLTITGRGFQSVKGGFGGVYLMFGWVDDPRGGSWKPSRGGVTGSDYRYIPDAENAADSQGYLRFIAFPGSSTATEANAVLSASGGFTVTLNIPGPTFQSVDRNGRVVSVDCRKVTCGVITIGAHGVKNAANETFTRVPFTTVYDAAPAGQDTTTTDGTTTAGNGAATGTGTTTGTTTTGATGAIGTGRKARAGTPRLTTDRLTAKVGNTLAFTATGFAPGEQVVGVLDDGVAGIGPMVAGPSGEVAGILPLPATLSAGTHELRLTGAASGGAASERFAVRAVDVSPAPEAAPEDDERPGSRVFLFVAAGLFALTLLGLVLRLARRRRRAAGSTGALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD91</accession>
    <name>A0A0Q8VD91_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09550</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894607.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52669">
        <property type="protein sequence ID" value="KRC52669"/>
        <property type="gene ID" value="ASE19_09550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2153430at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="400"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="208"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="271"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="420"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="278"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="344"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="448" mass="47788" checksum="1B7D06A947B79145" modified="2016-01-20" version="1">MDMGEPSIARAQLDALIAAAAPAPLPARQAIALLKQLGETDAAVLGRLAYHALTGVAPGEGEPDSPVDVAPGFPPFAAEVLMRAIAGPDHRRPTAQALLIVLDTVPAASWPTDGLPEVELPEVELPDDELPEVEEVEEPEPDPVAETVDPEQVAEPVAAAVEVVAPDPEPVIVPEVEVDEEVEEHAPQRSVARALEHQQFRDLLTPTRSIPRFDPLTDPLTAPWYPDNEDGPFTPPARDPEPEPESVAEPVVEAIEPVEPDPEPEAVLEVEPEPVDAPGPEIVEEPETVEEPEAVVEPEAVVEPEAVVEPEPVSPVRGMHDEFRDFASPSFAVPQFEPLEGELPAGSDRVRRRRGRDSSDVPAEPVADEPKVKAPKVKEPKEPREPKVANAASHDDRHQTLLLVAIIAVLILVGVLYATSRDSEETPGDGGGPQGASRSMAQPSSAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDR0</accession>
    <name>A0A0Q8VDR0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NrdH-redoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04550</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55119">
        <property type="protein sequence ID" value="KRC55119"/>
        <property type="gene ID" value="ASE19_04550"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097573">
        <property type="term" value="F:glutathione oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011915">
        <property type="entry name" value="GlrX_actino"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002109">
        <property type="entry name" value="Glutaredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00462">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02200">
        <property type="entry name" value="GlrX_actino"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutaredoxin" evidence="1">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="77" mass="8413" checksum="49446D94322BEE74" modified="2016-01-20" version="1">MYTTPWCGYCHRLKSQLDREGIAYDVVDIEQQPEAAAIVESANNGNQTVPTLVYSDGTAQTNPSVVQVKAKLEQLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE58</accession>
    <name>A0A0Q8VE58_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">DNA mismatch repair protein MutT</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_07535</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895355.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53923">
        <property type="protein sequence ID" value="KRC53923"/>
        <property type="gene ID" value="ASE19_07535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1538300at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="4">
        <location>
            <begin position="2"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="32145" checksum="72CF75DCE1596376" modified="2016-01-20" version="1">MPDILAAGVVAFRPGREVLLVHRPKYDDWSFPKGKLDRGEHAVAAAVREVAEETGLHVRLGPPLPSQRYPVARRTKTVHYWTGRVVGDDDVTAYRPNDEIDGVAWVPVGEAVERLSYDHDRDTLAAALKVRRRTRAVVVLRHGQARSRKTWRGDDAARPLLRAGEHESDRLVPLLAAYDVTRVTTSTSTRCVQTVRPYAETAGLDLDLRPRLSEERATAKTVAKVVEELLAADVGSVLCTHRPVLPLVYDAAGLDLPDDESGLQPAEMLVLHVRKGAVVAVERHRPRATAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEU7</accession>
    <name>A0A0Q8VEU7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895079.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53152">
        <property type="protein sequence ID" value="KRC53152"/>
        <property type="gene ID" value="ASE19_12290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011044">
        <property type="entry name" value="Quino_amine_DH_bsu"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50969">
        <property type="entry name" value="SSF50969"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359975" evidence="1">
        <location>
            <begin position="31"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="336" mass="34725" checksum="8F1DA24729AF4C81" modified="2016-01-20" version="1">MIDRRAGVVLTVAAVIGIAGGAGTALTVGADDGADDKTAGTTLAQPLWTTSTELHDGDTVVPLEGVGFVTGLERIDDHWVLQDMPDGTHAKPRVLRVDPDGSVAVLAETNGYGDIDAHGTHHVGLGPDGESYVVTDLTSGDTTRVAPPPDPGSPEGTALFDGDAVITGWSPVGTTYYRSNLDGTDLTMVGRDIGDGRFAPDRSRYVGLRVGLSQDCVLGGPAQEEPDLWRSCPGGLGAASPYSPDGTRVVTLASTRPEGMPKQVNVLDAATGKRVAQVDLPDDVFDVAMLDDERLEVVTVTGPDGAQQTTVHVCDLSSRCTEAGTAKGVGVLGTSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEW1</accession>
    <name>A0A0Q8VEW1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_08505</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895649.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54217">
        <property type="protein sequence ID" value="KRC54217"/>
        <property type="gene ID" value="ASE19_08505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1958431at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005171">
        <property type="entry name" value="Cyt_c_oxidase_su4_prok"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03626">
        <property type="entry name" value="COX4_pro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="24"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="55"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="75" mass="7909" checksum="963D25B025708D43" modified="2016-01-20" version="1">MFLVGATVLTAVLGLEQHGGSTAVGLALLVIAFVKVRLVALHFMEVRDAPLALRLLVEGYVVVTLVVLVVLRVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF14</accession>
    <name>A0A0Q8VF14_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12015</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895033.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53105">
        <property type="protein sequence ID" value="KRC53105"/>
        <property type="gene ID" value="ASE19_12015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2053538at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="137" mass="14978" checksum="66BC32ED77C62765" modified="2016-01-20" version="1">MARPTEETAPEPPRIWEKTGGGAVLIGWACGQCGQRGLPRQYFGCERCGAPREDISESALAARGVLRSSASIERHAVWPVPFLMGEVELDDGPIVHSFLSAETAWEPGMRVAGDADDLSREPYLIFVLEEKPHGTHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF51</accession>
    <name>A0A0Q8VF51_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09395</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894580.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52642">
        <property type="protein sequence ID" value="KRC52642"/>
        <property type="gene ID" value="ASE19_09395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1119700at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="13"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="270" mass="28977" checksum="8C7FC60FEC91992D" modified="2016-01-20" version="1">MLAHERIGSGEPLVLVHGIGHRRQAWYPVVDRLAEHREVILLDLPGHGESPALVPDGRPIKDQLRGILEDFFAEQDLDRPHIAGNSLGGRIALEAAADDLVSSATTLAPAGFWRGNLDFLYIRAVFVALTGAATLLEPIAPTLLRTAPARAAAMGLLMTHGGRLDAERVLGDVHGLVAAKPALKTIIDGGEPFDRSIDPSIPVTVAWGTRDLVLLPYQAERARKALPHATHVSLPKCGHVPMVDDVDLVVDVLLEGSSHPRLGQARYDVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFU6</accession>
    <name>A0A0Q8VFU6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SnoaL-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10590</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894783.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52850">
        <property type="protein sequence ID" value="KRC52850"/>
        <property type="gene ID" value="ASE19_10590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1736098at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13577">
        <property type="entry name" value="SnoaL_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="4"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="16145" checksum="D286C84C4594793B" modified="2016-01-20" version="1">MDLQELSDRAEIADAITRYTLAVDEGDFDRLDTVFTPDAHIDYTESGGVADTFPVVKAWLAEALPGFSTHRIHMLGQIAFEFADGRDEAAVTAYFHNPMRIADGRGGERVVEVGGLYRHTFVRTEEGWRSRKLHEQVVWTRGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG98</accession>
    <name>A0A0Q8VG98_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_14460</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917975.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53533">
        <property type="protein sequence ID" value="KRC53533"/>
        <property type="gene ID" value="ASE19_14460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="38563at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002909">
        <property type="entry name" value="IPT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022409">
        <property type="entry name" value="PKD/Chitinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000601">
        <property type="entry name" value="PKD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035986">
        <property type="entry name" value="PKD_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00429">
        <property type="entry name" value="IPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00089">
        <property type="entry name" value="PKD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="SSF49265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49299">
        <property type="entry name" value="SSF49299"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="SSF81296"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50093">
        <property type="entry name" value="PKD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKD" evidence="4">
        <location>
            <begin position="1533"/>
            <end position="1585"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="5">
        <location>
            <begin position="1592"/>
            <end position="1680"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="501"/>
            <end position="561"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="547"/>
            <end position="561"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="2011" mass="205172" checksum="640F2439F6107D90" modified="2016-01-20" version="1">MARSGPITSYALLRPGGWTALLADTPLAEGPLQQVTVGDVLQYLEDHPTSPQTLAIRALTYADFDLDGSVVGRIPLAAVVLGAKPLSAIALPGAGGGASGRLAAWCGEIQAQGFSCPELRNGVTVDAATVASSLDAGGVDLARTRLGDVPLVTLDPTDTALADITARGTYLTGTPLGDVRLDALSSGARTALVDCSALGSACPGDYTLGSAQRENAEALRATGTLADLASGVPQDVTFGDLLFSLVDPSYYPWEDLPLQGVNLSEARAAAQYNPSEDPITGGTWTLGFVADRGDTSDAIADVRVSIVFPASTMLNSRVDAQLRVSTSGPAGVGEIDPATTFSGGRVELAIGDVAPGTAVQIELTSVGRLNFGPGDLRVEVGGDPDTSGEPQVTAAGEVSSVSAPPFYNGTETVYDGGASPYQGAVGEGSEHPSNAPTISPDIMYFGHLGYVGGYQQPKPTDPIDNDYYRIPAQPAGSRIVVSVDPMAADVDLGLFRLTSAGGSVSGAPPDTVGLDGVPVEDGTPSEEDQQSAPLEVADAPDGYRTVDTSTVPGTAREQVSTQADGSYLIKVSGPVDRTYRPYNLRYTVITPKPEVHCPAVTDPGYAAPGTLATPAADLPAGTDALFLVDRTRLVDAYPAAGPATMDHLADFAAHAPGVSGQVIELDRYAGYVTARNEADQNPCSVAAVNAVVQQIGAIVRAKLGPVGSPARDTVASITVVGSDDLLPFARVPDTVQRSNESTFEGDLRRANAPGGGACPTVAAGDVDPCATPLSAAAFGSYLLTDDPYGDLDPIPWLDRFLYVPDIAVGRLVETPAQIDAALAQYRDPAVGGQLDLDTALTAGYGAWADAGAGLDAVLDQRGMDATHLSPDDWSKAQLLDALFPSGGATPDVAAIHAHMDPSRLLTGSDEIVTTDDYDVDRLAGRLLFTLGCHAGLNLPNRYFGGATDDWTESLAGKAVYVGNTGYGYADDNVQGLTERLLALYANRVGGHQSAGQALMYAKQAYLGELGLYSNYDEKVLMQATFYGLPMYRFADPVADTADPPAPTTHSDPATGLVAASFDFDPTFQRHTVGDRTYSTVAGEEPQVVADRPLLPRTSVPVTVAGQRAHDALVTELTTDVDDVDPAVAAPVVGEDAAASGPDGSGSFPSTFTNVNRYRTPDGVRQDLVLLPARVDMTTDPVTGDVTATEERFTHAGVEVFYGGGDDDRKPEIEEPTVARNGSTATFSVPVTDASGVKRVVVLTQTTAGGTWQVLDSADGDLTRSGTTWTGSADVGAGGTLRWFAQAVDGAGNVALSGNRGALNRVSAVRPSIDAGADADLELGDRLTREVTISDADSTSWTATLDTGLGPEPVPVRDGKVLVDVAPSTVGSNTATLTVCDDGDRCASDTFALTVRQNVPPYAGVSLDRATATTGATLTATSEVSDPDGDATQVRHVWRVNGGVVLDTGWQSSGTSTLDLGVAGNGDVGDEITVEATARDAGQTGATTEARATVVSTAPQLTMPAAATVRSGDLYAASAQASDVDGAGLTAVVDYGDGTAPAAVAVVNGSLALAHTYTSEGDHVVHVTVTDPQGEQASGSTTVEVTPAHDPVAPSEVRGFDTVPGNAQVALTWQPPAVGADDLQHYLVRASDGRTFTTTATAFTVTGLTNGATYFFDVSAVTAAGTATVRSQVVVPNRPPTPLVPSATGFSPASGPIGTQVVLTGKNLWLAAVRFHGVTTPAEVVARTATQVTVRVPAGATTGILTVTSPGGTGTSTKAFTVSATPPPVVSSVPLSAVVGATISVSGQNLLAAKVRFNNATLPGQVVSRTATAVKVVVPAGALTGTLSVLTPGGSAVSKSLRIDPTGAPAVTSAPASALRGATVTIGGKNLLAARVYVNGGALEATVLTRTATSLQVVVPVGAATGKVRVVTPFGTAESPKVVAITASPAPKITGVRTSAGTTNGPAGVPVTIQGSGLLGATVWFNGRPAPVVKGTASSLTIAVPADAVTGYVTVWTSGGTARSPLVFAVTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGA1</accession>
    <name>A0A0Q8VGA1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_11490</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894940.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53010">
        <property type="protein sequence ID" value="KRC53010"/>
        <property type="gene ID" value="ASE19_11490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1926714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025302">
        <property type="entry name" value="DUF4162"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13732">
        <property type="entry name" value="DUF4162"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="2"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="42"/>
            <end position="49"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="345" mass="36517" checksum="4A47DC9199B388D3" modified="2016-01-20" version="1">MIRARGLVQTFHTGQGKQKREVPAVRGVDLDVAEGEVVGFLGPNGAGKTTTLRMLTTLLRPTAGTATVAGFDVATQPVDVRRSIGYCSQVGSTFSGAYAGDEVVDHGMLYGMSKKAAVAKGHELFDKLQLDGLWKRMPKNMSGGQKRRLDIAMALIHSPSLVFLDEPTTGLDPQARINLWQHIADLRSKEGATVFLTTHYLDEADALADRIVIIDQGTIVASDTADNLKAAVAGDLVDLEVTTDEQVAVARDKLASISQDVEVDGHHVRGRVARAGKAVPGLLRDLDGSGVALESIEVVRPTLDDVFLTLTGRSLRDAEAAAEAAAAPADIADTADTARTTTEGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGM6</accession>
    <name>A0A0Q8VGM6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10345</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53616">
        <property type="protein sequence ID" value="KRC53616"/>
        <property type="gene ID" value="ASE19_10345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="174" mass="19145" checksum="3B8FB1439715D9A2" modified="2016-01-20" version="1">MTLRAATDGDLDAVAAIYAREVREGTATFDLTPPPRSKWEKLLASLHPGDHFLVAVDDETDDETNHETDAAVLGFAYSSAFREKGAYDATREVTIYLDPSAAGRGLGRALYGELLARLTASGVRVALACISLPNDASEGLHRACGFERQGVLHQVGRKFDRWIDVVWWERLLQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGW0</accession>
    <name>A0A0Q8VGW0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Polysaccharide biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56632">
        <property type="protein sequence ID" value="KRC56632"/>
        <property type="gene ID" value="ASE19_02010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="181"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="220"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="257"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="291"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="333"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="361"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="385"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="43480" checksum="D78B83E927BFC729" modified="2016-01-20" version="1">MTTSVQVSQSRLRRLLRSTAGIAIAMAVMNIGTYAFQLVSARLLGPSQYGAVASMMALMMVLSVLQLGLQATAARRISAEPGDVAAIERTVLMTTWRAALVLGLVSLAAAPAVWHLLRLDGLMPAILLALCVVPVTVMGGQAGVLQGERRWLPLSTVYVAVGVPRVLLGGGFLLVSATETSAMLGVLIASWIPVAVGSWALRHRPDDDVEHHDTHVRRDVVMEMLGSSVALLAFTALSNLDVVVARSVLDEHDAGLYAGGLIVTKAVLFLPQFAVVILFPSMSSDGESRTAVLKGLTFVAGLGAAATGATYLLSGLALVFIGGNDYAGVQDRLWLFAVLGGLLSVLQLLVYAGLAKRGRATKYLIAAGVLVLVVAGATAETVLGLATTVAAVDLFVVLLLIGLQMIRHKREGTTAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH93</accession>
    <name>A0A0Q8VH93_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Multidrug ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_02195</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892678.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56660">
        <property type="protein sequence ID" value="KRC56660"/>
        <property type="gene ID" value="ASE19_02195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="643917at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="27"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="72"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="145"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="176"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="254"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="286"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="33"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="356"/>
            <end position="590"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="389"/>
            <end position="396"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC56660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="603" mass="64315" checksum="1E93228A728C5860" modified="2016-01-20" version="1">MSTQLSTGEDIGAWETIRRGVRHSPELVEGIGWTLTLAVLASVGQVIVPIAVQQTVDKGLRGDGGPDVSFTTWLALAAGAAIVVTSWASYAMTARLFSTAERGLATLRVKAFRHVHDLPLLTQNTERRGALVSRVTSDVDQVSQFLVFGGLLFVVSIGQMLIATIVMVFYSWQLALVVWVCFAPLFLSLRYFQRKLAAAYGTVRRQVGILLSAVSEPVVGAAVVKSYAIEDRTQERIDRAIETHKTASTRAQGFTAFSFSLGGISAGFANAGVLIVGIWLGQGFAWGEGITAGEVLAFAFLVTLFVGPVQMGTQILTDAQNAIAGWRRVIGILDTPADLVDPGPDGQSLPAGAIDVRFDGVAFAYPGGSEVLSDIELEIPAGQRVAVVGETGSGKSTIAKLLTRLMDPSRGRVLLDGIDLREISEVALRSSVVLVPQEGFLFDDTLAANVRYGRLGATADEIREAADAIGLGDWLTGLPDGVETRVGQRGESLSAGERQLVALLRAQLADPDLLVLDEATSAVDPELETRIARALERLMSGRTSVTIAHRLSTAEAADVVVVVDRGRIVQHGPHAELVRQADTPYARLHASWVAQRGAVPDPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHA6</accession>
    <name>A0A0Q8VHA6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">tRNA pseudouridine synthase B</fullName>
            <ecNumber evidence="5">5.4.99.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">tRNA pseudouridine(55) synthase</fullName>
            <shortName evidence="5">Psi55 synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">tRNA pseudouridylate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">tRNA-uridine isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">truB</name>
        <name evidence="9" type="ORF">ASE19_02955</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>uridine(55) in tRNA = pseudouridine(55) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:42532"/>
            <dbReference type="Rhea" id="RHEA-COMP:10101"/>
            <dbReference type="Rhea" id="RHEA-COMP:10102"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="EC" id="5.4.99.25"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.25" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892811.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56792">
        <property type="protein sequence ID" value="KRC56792"/>
        <property type="gene ID" value="ASE19_02955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1166299at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106029">
        <property type="term" value="F:tRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031119">
        <property type="term" value="P:tRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02573">
        <property type="entry name" value="PseudoU_synth_EcTruB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01080">
        <property type="entry name" value="TruB_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002501">
        <property type="entry name" value="PsdUridine_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036974">
        <property type="entry name" value="PUA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015225">
        <property type="entry name" value="tRNA_psdUridine_synth_fam2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014780">
        <property type="entry name" value="tRNA_psdUridine_synth_TruB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032819">
        <property type="entry name" value="TruB_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13767">
        <property type="entry name" value="PTHR13767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09142">
        <property type="entry name" value="TruB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16198">
        <property type="entry name" value="TruB_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01509">
        <property type="entry name" value="TruB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00431">
        <property type="entry name" value="TruB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TruB_N" evidence="6">
        <location>
            <begin position="27"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="TruB_C_2" evidence="8">
        <location>
            <begin position="180"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="domain" description="TruB_C" evidence="7">
        <location>
            <begin position="232"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="5">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01509"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF09142"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF16198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="287" mass="29989" checksum="CDFEEED852F66BDA" modified="2016-01-20" version="1">MSTVPSGLVVVDKPAGLTSHAVVARVRRTLGTRKVGHAGTLDPMATGVLVIGVERATRLLGHLMLTEKGYDATVRLGATTTTDDAEGELVAATPAGHLQPAVVAGAFEEQVGDILQVPTAVSAIKVDGKRAYQRVRDGEEVELKARPVTVHELTVHDQRVVGEFVDVDITVRCSSGTYIRAIARDVGAALGVGGHLTALRRTAVGPFTLDGANEDLEHLDVTPLAVAARASFPALDLDEEQAQAVRYGRPLPLAIDELTGVFAPDGEFLALYQPAGGTAKPAAVFVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHC2</accession>
    <name>A0A0Q8VHC2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_03480</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the TPP enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892895.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56878">
        <property type="protein sequence ID" value="KRC56878"/>
        <property type="gene ID" value="ASE19_03480"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012000">
        <property type="entry name" value="Thiamin_PyroP_enz_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012001">
        <property type="entry name" value="Thiamin_PyroP_enz_TPP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000399">
        <property type="entry name" value="TPP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045229">
        <property type="entry name" value="TPP_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968">
        <property type="entry name" value="PTHR18968"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00205">
        <property type="entry name" value="TPP_enzyme_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02776">
        <property type="entry name" value="TPP_enzyme_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00187">
        <property type="entry name" value="TPP_ENZYMES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="TPP_enzyme_N" evidence="6">
        <location>
            <begin position="19"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_M" evidence="4">
        <location>
            <begin position="208"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_C" evidence="5">
        <location>
            <begin position="402"/>
            <end position="549"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="564" mass="57730" checksum="2C304F303CA23183" modified="2016-01-20" version="1">MTSTTPPDDTADGTLTGHAGELAVAVARAHGVETMFTLSGAHVFPMYDGAVKSQQAGDMPVRLVDVRHEQTAAFAAEATGKLTRVPGLAVLTAGPGVTNGVSAMAQARFAGSPMVVVGGRAPNNRWGTGALQEIDHLPIVAPVTKHAATLMRADDVAAGFHTAFSEARSSHRGPTYVDVPMDEFFNVGSGVVPSIGALRGAEPDTDAVARIAALIARAERPVLVLGTDVWADHAEAAALRLVEEMRLPAITNGMGRGVVPGGHPLLVTKARGAALGGADLVVVVGTPLDFRLGYGVFGGKDGGEPAAVVHIADSAGQLSGHATLAGSVAGDLTLVLDGLLEALAGADQPNRTDWITSLQDTVAAASARDAELLGAEADPIHPARIYGELVPRLADDAVVIGDGGDFVSFAGKFVEPKRPGCWLDPGPYGCLGAGLGAAVAARIARPSAQVVLLLGDGAAGFSLMDVDTLVRHDLPVVMVMGNNSAWGLEKGPMQMLYGYDVAADLAPRTAYDQVVSALGGAGETVTDPRQIGAALDRGFAANAPYLVNVITDVNAPYPRSTFGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHQ8</accession>
    <name>A0A0Q8VHQ8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_07515</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895352.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53920">
        <property type="protein sequence ID" value="KRC53920"/>
        <property type="gene ID" value="ASE19_07515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1416748at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015415">
        <property type="term" value="F:ATPase-coupled phosphate ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03260">
        <property type="entry name" value="ABC_PstB_phosphate_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005670">
        <property type="entry name" value="Phosp_transpt1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43423">
        <property type="entry name" value="PTHR43423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00972">
        <property type="entry name" value="3a0107s01c2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="259" mass="28052" checksum="9006B14272A574BA" modified="2016-01-20" version="1">MSKSIDVSDVNIYYGDFLAVQGVNMSIRAGAVTAFIGPSGCGKSTFLRSLNRMHEVIPGARVEGKIVVDGQDLYGPGVDPVAVRRQVGMVFQRPNPFPTMSIYDNVLAGLKLNAGKLKKSEADAVVEKSLRGANLWNEVKDRLNKPGMGLSGGQQQRLCIARAIAVEPQVLLMDEPCSALDPISTSAIEDLIHELKDEFTIVIVTHNMQQAARVSDDTGFFNLKATGEPGHLVEFNPTKKMFANPDDPSTEAYISGRFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHS4</accession>
    <name>A0A0Q8VHS4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07600</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895367.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53936">
        <property type="protein sequence ID" value="KRC53936"/>
        <property type="gene ID" value="ASE19_07600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1906173at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="198" mass="21861" checksum="1FCCC9E1A68AC33A" modified="2016-01-20" version="1">MTGSSGHLNPWDRQPGESNPAWEAFKAYRDIGLSRSTAKVQQSIGKSKRLIDGWSSQHAWVLRARAWDAEQDRLWQTELRDARRELAKRNVNVARALLTVGGKGLAEIAAAPGALRPNEVARLVEASARIQQLLPADEVGRSALDDDIDLDELTDEEIVHHLLALKRELEADLAEYVGLVDGDTGDDPMTTTPYEGDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHZ9</accession>
    <name>A0A0Q8VHZ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03955</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892981.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56964">
        <property type="protein sequence ID" value="KRC56964"/>
        <property type="gene ID" value="ASE19_03955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="891360at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="117"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="358" mass="38881" checksum="26BA5B5CFEE680C3" modified="2016-01-20" version="1">MAQSTKPAKAPSKQSVVNLWDFLVKGGIADLTRTPSEIIDTGRTRELHRYEKAKGVRSKGIPVLLVPPLGSQASCFDLRQGLSLAQDFVNRGRPTYLVDYGPLKGEDRLVGIEHFVNDVLPPAIRKVSEDNGGKDVHLVGWCMGGLLSLGTTAVHRELPIRSVAMVASPFDLSKQPILKPVQAIGKVTGGRLVGSALKAAGSVPAPLVSIGFKATALPTYLKKPRTLWNRREDREFLGQVQAVDHIMNNMLAYPGRATLQVYQRLALRNELASGRIQGPNHLIDLATVEVPVMNVAGRTDVLVPPAAAHHVGELLTSSKEVRLPLAPGGHLGVLTGTKAPETTWVEIHDFLEKYDRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIB5</accession>
    <name>A0A0Q8VIB5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FdrA family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10970</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894851.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52919">
        <property type="protein sequence ID" value="KRC52919"/>
        <property type="gene ID" value="ASE19_10970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="749518at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005811">
        <property type="entry name" value="CoA_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02629">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00549">
        <property type="entry name" value="Ligase_CoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA_binding" evidence="2">
        <location>
            <begin position="190"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="domain" description="Ligase_CoA" evidence="1">
        <location>
            <begin position="327"/>
            <end position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="490" mass="48544" checksum="FE1DA92A4A5A12D4" modified="2016-01-20" version="1">MTVEHVEIRPGAYADSVALLQVSRDVAATPGVAAAQVAMATELNLEVLAGMGFDVPAASANDMVVALRLDDENALSAALAAVDAALAAVRKGSSGGGQVTVPPRTTASALRRSGGGLALVSVPGASALVEAMDALDAGCDVMVFSDNVPVEQELALKRIARDRGLLVMGPDCGTAVVGGLGLGFANAVTPGNVGIVAASGTGCQQVLALLDAAGVGVAAALGVGGRDLSSAIGGISTMTALARLDADPSVDHVLVVSKPPAPEVATAVEKYAAGLSTPVRFALLGAGQPDLTTQVEALLGDLGVAVPEWPSWGTPASSAGGSALRGLFVGGTLCDEAMLLAAATLGDVRSNIPLSPELALDSSLLAPGHLMIDFGDDGLTRGRAHPMIDPTLRLEHLAKVAADPDTAVILLDVVLGHGAEDDPAAGLAPAVRAARAAREVPVVVACVGTSADQQGLARQAEALAAAGAEVHLSNAAATRRAVALVTGGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIL0</accession>
    <name>A0A0Q8VIL0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Carbohydrate kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_11425</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894929.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52999">
        <property type="protein sequence ID" value="KRC52999"/>
        <property type="gene ID" value="ASE19_11425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1619686at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008993">
        <property type="term" value="F:rhamnulokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019301">
        <property type="term" value="P:rhamnose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07771">
        <property type="entry name" value="FGGY_RhuK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018485">
        <property type="entry name" value="Carb_kinase_FGGY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018484">
        <property type="entry name" value="Carb_kinase_FGGY_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013449">
        <property type="entry name" value="Rhamnulokinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02782">
        <property type="entry name" value="FGGY_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00370">
        <property type="entry name" value="FGGY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0684">Rhamnose metabolism</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="FGGY_N" evidence="2">
        <location>
            <begin position="72"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="domain" description="FGGY_C" evidence="3">
        <location>
            <begin position="255"/>
            <end position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="492" mass="52328" checksum="C9F7D22C575E6D3B" modified="2016-01-20" version="1">MSGAVRVAAVDLGATSGRVMSGRISGERVEINEMHRFPNGAVRVRGSLFWDVLGIHREVLRGIGEVARTGPLHGVGIDSWAIDHGLLDRDGQLLGQVFSHRDARVDGVADKVVAEVGAAALYGTTGIQQLPFNTLYQLVAARGSAALESAETMLLLPDLLGYWLTGVVGAERTNASTTQLYDVRSGTWAVDLCRELGLPWGILPPLRDPGSLLGPLLPDVAHELGVAADVPVVAVGSHDTASAVVGVPAEAKDFAYISSGTWSLVGLELDQPVLTEEARLADFTNEIGVDGTVRFLKNVMGLWVLSESLRSWSERRYKDVELRSLIAAASEFEPLRTVVDINDPRLLFPSTAADPMPERIAALAAEAGEVVPHSPVAITRCIVDSLAVAYRRHVRSAAALAGTSPEVVHVVGGGSQNEVLCQLTADACGLPVLAGPVEAAALGNVLVQGRALGADLPDLPAMRDLVRRSYDVRRFEPRDGIDWDAAEARALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIU5</accession>
    <name>A0A0Q8VIU5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Molybdopterin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11870</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917965.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53079">
        <property type="protein sequence ID" value="KRC53079"/>
        <property type="gene ID" value="ASE19_11870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="88184at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02793">
        <property type="entry name" value="MopB_CT_DMSOR-BSOR-TMAOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041954">
        <property type="entry name" value="CT_DMSOR/BSOR/TMAOR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Molybdopterin" evidence="3">
        <location>
            <begin position="49"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="domain" description="Molydop_binding" evidence="4">
        <location>
            <begin position="620"/>
            <end position="737"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="639"/>
            <end position="660"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="769" mass="83853" checksum="C3CCB80318817FCA" modified="2016-01-20" version="1">MRSRHLTHFGMLEAETDGRSLRDVTGWSGDPDPRAIIGNVGTSQHHASRIARPAIREGWLRNGPGGAGRGDEPFIEVGWDEALDLLAAELCRVYTASGPSAVYGGSYGWSSAGRFHHGQSQLHRFLNCLGGYVSAVGDYSYGTSGALLPYVLGTSPAEVMADATTWEVIAEHTELFVSFGGLSEKNSAVGPGGIAKHGTREGVRRAREAGCRFVDISPIRDDAFAEAGTDWIAPRPGSDAALMLAIAHVLDVESLADRAFLDRCTVGYERFIAYVRGEVDGTPKSPEWASALTEVPARTIEELARAMARSRTMINLSWSMQRQDHGEQPIWLGVTLAAMLGQVGLPGGGFQHGYGSSADVGLPRRVMGPPSLPQGRNPERSFIPVARISDMLLHPGEVIDFNGQQITLPRIDLVYWVGGNPFHHHQDLAKLRGAFKRPSTVVVHEQFWTSTARHADIVLPATMSIERDDYGSGRNDPFFFPMPALTEPAGEARDDYAIFAGLEGRLEIDDCFSEGRTTRQWLHHLYDGWAERMAVGGHPVPGFEEFWTSDHLEIPVEDPRQILHSAFRADPVSNPLATPSGLIEIFSATIDAFGYDDCPGHPVWLEPREWLGTHDPAHPLHLISNQPKTRLHSQLDVGQTSQQSKVNGREPARMNPADAEARGLRTGDTILLRNDRGTCLAGLVVSEEIRPGIVQLATGAWYDPDPDDPSFCRHGNPNVLTADLPSSLLSQGTTAQHTLIEVERWDGPLPALTVDRPPALLPRHSVSGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIX8</accession>
    <name>A0A0Q8VIX8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">K(+)-insensitive pyrophosphate-energized proton pump</fullName>
            <ecNumber evidence="9">7.1.3.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Membrane-bound proton-translocating pyrophosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Pyrophosphate-energized inorganic pyrophosphatase</fullName>
            <shortName evidence="9">H(+)-PPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">hppA</name>
        <name evidence="10" type="ORF">ASE19_23915</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>diphosphate + H(+)(in) + H2O = 2 H(+)(out) + 2 phosphate</text>
            <dbReference type="Rhea" id="RHEA:13973"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="EC" id="7.1.3.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the H(+)-translocating pyrophosphatase (TC 3.A.10) family. K(+)-insensitive subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.3.1" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894006.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57372">
        <property type="protein sequence ID" value="KRC57372"/>
        <property type="gene ID" value="ASE19_23915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="98036at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004427">
        <property type="term" value="F:inorganic diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009678">
        <property type="term" value="F:pyrophosphate hydrolysis-driven proton transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01129">
        <property type="entry name" value="PPase_energized_pump"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004131">
        <property type="entry name" value="PPase-energised_H-pump"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31998">
        <property type="entry name" value="PTHR31998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03030">
        <property type="entry name" value="H_PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001265">
        <property type="entry name" value="H+-PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01104">
        <property type="entry name" value="V_PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="7 9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-1278">Translocase</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="16"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="69"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="108"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="151"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="189"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="255"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="279"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="315"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="354"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="400"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="436"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="502"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="540"/>
            <end position="566"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="619"/>
            <end position="637"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="643"/>
            <end position="663"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="714"/>
            <end position="732"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="738"/>
            <end position="757"/>
        </location>
    </feature>
    <feature type="site" description="Determinant of potassium independence" evidence="9">
        <location>
            <position position="497"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01129"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC57372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="778" mass="78081" checksum="2EE2CE1E49932F84" modified="2016-01-20" version="1">MPRPLLADVEVSGGDLALVGLVAVIALVSLAMATMFRAEVLRAGEGTPNMQRIALAVQEGANAYLTRQFRTLTVFAAIAFVVLLALPADVGDGASGLQSEWSVRIFRSIFFLVGAGFSGAIGFLGMSLAVRANLRVAAAANEQGRDPAMNIGFRTGAVVGMGTVGLGLLGASVVVMVFQDASPKVLEGFGFGAALLAMFMRVGGGIFTKAADVGADLVGKVEQNIPEDDPRNAATIADNVGDNVGDCAGMAADLFESYAVTLVAALILGSQAFGDKGLVFPLIVPAIGALSAIAGVYLTKPRAGESGLTTINRSFYISAAVGAVASAIAAFVYLPSEWSDLTGATGETAELGPAAFAAGAVVIGIVLAAAILALTGYFTGTEHRPVKDVGKTSLTGAATVILSGLSVGFESAVYTAIVIGAAVFGAALLAGSSTGLALFAVALAGCGLLTTVGVIVAMDTFGPVSDNAQGIAEMSGDVSEEGARILTELDAVGNTTKAITKGIAIATAVLAASALFASYTQSAGESLADITGLSGSDADAFASAFLVFDAKLIVGALLGASVVFLFSGLAINAVGRAAGAVVMEVRRQFRDIPGIMEGTARPEYGRVVDIVTRDSLRELSTPGILAILSPIAVGFGLGVGPLAGFLVGAIATGTLMAVFLANAGGAWDNAKKLVEDGHHGGKGSDAHAATVIGDTVGDPFKDTAGPAINPLLKVMNLVSLLIVGAVVSLSYGDSENDLVRILIALAAASGIFAAVYISKQRSSSIGDDAPAPSPAESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM19</accession>
    <name>A0A0Q8VM19_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">4-hydroxy-3-methylbut-2-enyl diphosphate reductase</fullName>
            <shortName evidence="5">HMBPP reductase</shortName>
            <ecNumber evidence="5">1.17.7.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ispH</name>
        <name evidence="6" type="ORF">ASE19_06415</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>H2O + isopentenyl diphosphate + 2 oxidized [2Fe-2S]-[ferredoxin] = (2E)-4-hydroxy-3-methylbut-2-enyl diphosphate + 2 H(+) + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:24488"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:128753"/>
            <dbReference type="ChEBI" id="CHEBI:128769"/>
            <dbReference type="EC" id="1.17.7.4"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>dimethylallyl diphosphate + H2O + 2 oxidized [2Fe-2S]-[ferredoxin] = (2E)-4-hydroxy-3-methylbut-2-enyl diphosphate + 2 H(+) + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:24825"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57623"/>
            <dbReference type="ChEBI" id="CHEBI:128753"/>
            <dbReference type="EC" id="1.17.7.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="5">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Isoprenoid biosynthesis; dimethylallyl diphosphate biosynthesis; dimethylallyl diphosphate from (2E)-4-hydroxy-3-methylbutenyl diphosphate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 6/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the IspH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.17.7.4" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895138.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55168">
        <property type="protein sequence ID" value="KRC55168"/>
        <property type="gene ID" value="ASE19_06415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1311145at2"/>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00097"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00059">
        <property type="reaction ID" value="UER00105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051745">
        <property type="term" value="F:4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050992">
        <property type="term" value="P:dimethylallyl diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd13944">
        <property type="entry name" value="lytB_ispH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00191">
        <property type="entry name" value="IspH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003451">
        <property type="entry name" value="LytB/IspH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30426">
        <property type="entry name" value="PTHR30426"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02401">
        <property type="entry name" value="LYTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00216">
        <property type="entry name" value="ispH_lytB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3 5" id="KW-0408">Iron</keyword>
    <keyword evidence="4 5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="220"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="5">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="10"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="265"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="34408" checksum="083B34264F0DA084" modified="2016-01-20" version="1">MLLAAPRGYCAGVDRAVVTVEQALDLYGSPVYVRKQIVHNKHVVANLEARGAIFVEELDEVPAGARVVFSAHGVSPAVVNEAAERHLKTIDATCPLVTKVHREAVRFAADGYTILLIGHAGHEEVEGTAGEAPEQTVLVEHPDDVATLEFAPDAKLAWLSQTTLSVDETMETVRRLRAKFPQLEDPPSDDICYATQNRQVAVKEIGASADLVIVVGSANSSNSVRLVEVALEAGAKASYRIDDVSELDEAWLDGASTVSVTSGASVPDHLVTEVLAYLAERGYPDARAVQTAEETLAFSLPKELHRDLKAAGRSTKTAVRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM51</accession>
    <name>A0A0Q8VM51_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Acyl dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08575</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895535.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54103">
        <property type="protein sequence ID" value="KRC54103"/>
        <property type="gene ID" value="ASE19_08575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1563802at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="322" mass="34569" checksum="6A41ECB5C08CB838" modified="2016-01-20" version="1">MTSVGGPFFDELAVGQVFDAAPGVTLSEGRAAQHQAIVGDRWRLCLDEHLARSVARAPVASPSFVTNVAVGQTTLVTQRVRANLFYRRFALLRQPLIGDTLRTTTTVVGLRENARREGRAPTGLAALHMRTVDQEARPVVDFFRCAMLPLSEGAAPTGHADDLDAIGRDLAPVDPLALVPEWDRSAYVGGGVRGVVPEAGEVLEVATGDVVSSAPELARLTLNVAAVHHDRFAGGGRRLVYGGHTIAVATSQLLRALPDLATVLAWESCDHIGPVHEGDTLTSRFTVERTRPAGDWQVLDLRAEVTADGERPVLDWRFSVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMZ4</accession>
    <name>A0A0Q8VMZ4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">UPF0225 protein ASE19_22745</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22745</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the UPF0225 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892598.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58885">
        <property type="protein sequence ID" value="KRC58885"/>
        <property type="gene ID" value="ASE19_22745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1472440at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00612">
        <property type="entry name" value="UPF0225"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004027">
        <property type="entry name" value="SEC_C_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023006">
        <property type="entry name" value="UPF0225"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02810">
        <property type="entry name" value="SEC-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="127" mass="14108" checksum="92295A5ABA5ACDDE" modified="2016-01-20" version="1">MTRGACPCGTGRPYDACCGPLHRGTDTAATAEELMRSRYAAFVVGEAAYLLATWHPATRPETLDLDDDVRWTGLEVLATEAGDADDRRGIVEFRAQFTEAGRAGVLHERSRFRRDAEGWQYVRGRQC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN19</accession>
    <name>A0A0Q8VN19_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phosphate ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02100</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57017">
        <property type="protein sequence ID" value="KRC57017"/>
        <property type="gene ID" value="ASE19_02100"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015415">
        <property type="term" value="F:ATPase-coupled phosphate ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03260">
        <property type="entry name" value="ABC_PstB_phosphate_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005670">
        <property type="entry name" value="Phosp_transpt1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43423">
        <property type="entry name" value="PTHR43423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="1"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="28"/>
            <end position="35"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC57017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="249" mass="27230" checksum="9D46892D4F94F620" modified="2016-01-20" version="1">MSAWFGQRKVLDRVSIDLPAGQVTALIGPSGCGKSTFLRILNRMHELVPGAALAGEVRLDGEDIYDPERRLTDARRAIGMVFQKPNPFPAMSIQDNVLAGLSLVGSKLKRSERQDLVEESLTRAGLWVEVRDRLRQPGSALSGGQQQRLCIARSLAVRPRVLLMDEPCSALDPTSTRVVEETIREIGSQVTIVIVTHNMQQAARVSDRCAFFLAAHGAPGVIVEQGPTDVIFDNPQDSRTADYVNGRFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNR4</accession>
    <name>A0A0Q8VNR4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23020</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892552.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58934">
        <property type="protein sequence ID" value="KRC58934"/>
        <property type="gene ID" value="ASE19_23020"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360211" evidence="2">
        <location>
            <begin position="32"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="90"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="423" mass="40741" checksum="033B3E22E0577BDF" modified="2016-01-20" version="1">MNIVRRLITSVGVVALLVGLVSVAPASPAGARVADTAECTAARDQVTRAVRAEARARVALASARKALVKAKKSHRAAKVRKAKRVVVTRTRTHRRSVTALRTARAHRDTACAAPGGGGTGGTGGGTGGGTGGGTGGGTGTPSKASTLGSLLGLLTAAGNGGSVPSLDPAQLLGLLNGLYPGVGSALDPTELTGILSGFTGADDLDLAALTGLLGGLGGSALDPAQLLALLGSGDLDPAQLTALVGSVTGILGTLGGTGLTGPADVLDLVTDLLGGLLADPTEVLGTLLGLLTAAGNGGAIPGLSLGEFTSLLDGLFPGASSLPLDVRTTLLGAFEQADVVGLGQLTGQVGGLGASTLDPAQLLGILGGDDLGAGQLDTLTGTITGLLNGVSGGTFVVPLNPLAAVSGLLCDLLGGLLGGLLGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNY8</accession>
    <name>A0A0Q8VNY8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22795</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892589.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58895">
        <property type="protein sequence ID" value="KRC58895"/>
        <property type="gene ID" value="ASE19_22795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1944256at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016499">
        <property type="entry name" value="NucleicA-bd_Rv2694c_prd"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006910">
        <property type="entry name" value="NA_bind_Rv2694c_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="120" mass="13241" checksum="87166F99C4C8F2A0" modified="2016-01-20" version="1">MGANKSRLRRTISKWANNTEADARDLRKTFTTAGVICIGDAPDREPVRLRGTLRTVTLRPRGGVPALEAELYDGTGTVTVIWLGRRRIAGIGPGRAIEVSGRIGSHEDNRVLYNPRYDLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPE4</accession>
    <name>A0A0Q8VPE4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Esterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23795</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57411">
        <property type="protein sequence ID" value="KRC57411"/>
        <property type="gene ID" value="ASE19_23795"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008236">
        <property type="term" value="F:serine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001375">
        <property type="entry name" value="Peptidase_S9"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00326">
        <property type="entry name" value="Peptidase_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_S9" evidence="1">
        <location>
            <begin position="68"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="248" mass="25987" checksum="48661596E083816B" modified="2016-01-20" version="1">MRRTSPARHAYGEDPSQWGDLFLPDGEPRGVVVVVHGGFWKAEYGAEQYGGPLASDLADRGWAAWNLEYRRVGNGGGAPATFDDVAAGIDHLAELDLDLTTVVTLGHSAGGHLATWAAARGGHGWTERVPVTHVISQAGVLDLRAADADGLGGGAARALLGHAPTAADARFDPAQQLPLDVPVWCVHGTDDDIVPPSQSASYVERARAAGATAELVEVPGDHFAVIDPATQAWARQVAVLDTIGRTTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ40</accession>
    <name>A0A0Q8VQ40_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23555</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893943.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57737">
        <property type="protein sequence ID" value="KRC57737"/>
        <property type="gene ID" value="ASE19_23555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047542at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="185" mass="19072" checksum="17B63B76D8FDD78A" modified="2016-01-20" version="1">MARRSPRDAMLDSAIALFRERGVAATSLRDVVAHSKAPRGSIYHHFPGGKEELARDATRRAGDLISSLITELVASADPVATVDLLVDHWSGVLLGSDYAAGCPIAAAALAPDDAAGARDAAGAAFGEWEELLAGALSSRGTPPQEAADRAALVVSAIEGALLVSRARRTDAPLRAVGRELASLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQS9</accession>
    <name>A0A0Q8VQS9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Big_3_5 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00220</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59503">
        <property type="protein sequence ID" value="KRC59503"/>
        <property type="gene ID" value="ASE19_00220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1242748at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032109">
        <property type="entry name" value="Big_3_5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16640">
        <property type="entry name" value="Big_3_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360277" description="Big_3_5 domain-containing protein" evidence="1">
        <location>
            <begin position="21"/>
            <end position="526"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="2">
        <location>
            <begin position="275"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="526" mass="52181" checksum="4AE0E137D19348EB" modified="2016-01-20" version="1">MLVALVGLAVGPAAGPAAGAAPDPGAGDLFLATDTAGDPATAVDDGGFWGHEGPAREGATVLSADLTDGGAGFLGQFGSGASMADFALVFTPTSTDGSAEAPEVTAGQTVAEAYPYFTRAGLQTPLQGDPAHPADDQVLLVSTQAEWDDWVADGRPAQAASSDDLVVRDTDLPGAPEAAHPRGRSILDRWAAGQRMSAVAVRTTGELVDGVPVVDASQGRAQAAWVSFTTAVDPAVGDADHPGVATSGAYQLGSGTTPAGSGAATMTVLSVPSGPLTAGVPVPLTAAVVPAADGTVEVRDGTDVLAVVALDADGVAAWSWTPSPGHHTLTAVFRPRDGAAWAGSSSPPTPVEVVDAAPRPSGGRAGDGVPEGMLVVSTPYTPDHPLDLGRLTMAPDAATYTSSVPFDGVLVSDTRAGGLPWELAALATNLTGANGAVINAQNLGLVHLVADIRTGSGTAAPVDRPGAFPPVEAAAAGALGLGLDPKPVMNLTAGPGTVELSGVLMLRAPVSTPPGHYTGMVTFTID</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQZ7</accession>
    <name>A0A0Q8VQZ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_03000</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892819.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56800">
        <property type="protein sequence ID" value="KRC56800"/>
        <property type="gene ID" value="ASE19_03000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1606159at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032808">
        <property type="entry name" value="DoxX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13564">
        <property type="entry name" value="DoxX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="122" mass="12725" checksum="5F4F882AEE10938B" modified="2016-01-20" version="1">MPVPFTAKAVTGAFVVSGVVHLVKPEVFEPLIPEQLPGGPRPWVTWSGVAELACAAGMLHPRTRKAAAYASVALLAGVLPGNVKMAADAQRSDNTAFKVLTAARVPLQAPMIRGMLKAARTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR59</accession>
    <name>A0A0Q8VR59_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Linalool 8-monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01680</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896584.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59755">
        <property type="protein sequence ID" value="KRC59755"/>
        <property type="gene ID" value="ASE19_01680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="816674at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002397">
        <property type="entry name" value="Cyt_P450_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00359">
        <property type="entry name" value="BP450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0349">Heme</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="46914" checksum="753B5CA83AAB9357" modified="2016-01-20" version="1">MTTTTAPEIKIFDYDTYAEGDPTTFGLPLEQYRHLRDEEPCYLQEFDDPMLIDRAWVVSRNEDIWEVDRNTELYAADRGYVNIWQVVPIDPKNGGMPAMLTTDGERHRAQRQVLAKGFTPGFVRKLEGKFRQYAKDVVDDALEKGTFNFVHTIAHNMPMEALGDVLGVPQEDRAKFFGWVDKFAAPFDTRITASFDEVMEAIGNLMVYSEELAELKRANPADDVMSRLVASGEGGDPLMSPEEIMGNVALLASGAAESTRTAMSHGMHELMRNPEAMAWVRERKDNIPNTLIQEMVRIASPFTHLVRTATRDHELHGKQVKEGDIVAMLFAAGNFDERAFDRPEVFQPDRIENPHVSFGRGPHKCLGQHVASLEMKILFEELFQRTSSIEPAGPISYVRDAYSRGVYELPVTITPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR94</accession>
    <name>A0A0Q8VR94_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03930</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892978.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56961">
        <property type="protein sequence ID" value="KRC56961"/>
        <property type="gene ID" value="ASE19_03930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1944130at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="164" mass="16828" checksum="7DD7A0AE3D8738DF" modified="2016-01-20" version="1">MQPLTRRRASIRSDSGFTLIEVLVSITILSIAGVAVLAGLQLSLKSSDIHRKQSTGGAYVRSYAEAIEAYLNTTGHYVNCAGPNAYNVPAVLGQLSSLPGNYTPTHSAATPLTGGGAAASTAPCGDKGVQRITLALTVPRKGGSVTEKLTIVVRKACGTGTSCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VT84</accession>
    <name>A0A0Q8VT84_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pyridoxamine 5'-phosphate oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23095</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892539.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58947">
        <property type="protein sequence ID" value="KRC58947"/>
        <property type="gene ID" value="ASE19_23095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1804797at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011576">
        <property type="entry name" value="Pyridox_Oxase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01243">
        <property type="entry name" value="Putative_PNPOx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative_PNPOx" evidence="1">
        <location>
            <begin position="12"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="155" mass="17347" checksum="C0523FDA42F7F42D" modified="2016-01-20" version="1">MSSGRNQVKLTDEEVQALLEENLKVQVAANGKDGFPHLTTLFYVVRDGRIAFWTYGRSQKIVNLERDPHVTALVEDGVDYFELRGVSIEGRAEIVRDRDTIFEIGSAVATRMAGVGSFEELGEFGVQAVEKQATKRVGVIIHPDRVASWDHRKMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUM7</accession>
    <name>A0A0Q8VUM7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Trypsin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_00440</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S1C family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59539">
        <property type="protein sequence ID" value="KRC59539"/>
        <property type="gene ID" value="ASE19_00440"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PDZ" evidence="3">
        <location>
            <begin position="258"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="28"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="36"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="363" mass="35824" checksum="DBA745625A37E9CD" modified="2016-01-20" version="1">MLTGALLVGGGAGVGGAAIYDAASGDPAGNGGGSSAPLQVADNGNPPAASGSVESVASKVLPSVVALEVSGGGASGSGSGVVLDTDGTILTNDHVVTLGGQIDSKQAEITASFSDGTRARASVVGTDPLTDTALVKVEGVDNLTPVTVGKSSNLDVGEQVVAIGSPFGLDATVTSGIVSALDRPVEVARDQQGNVTAYPAIQTDAAINPGNSGGPLVNMDGQLVGINASIRSTSSGAESESGSIGLGFAIPIDEVLPIIEQLRSGDTPTHARLGIQISDAQGQAGSSDTTLTGAKIEELEKGSAAAAAGLETGDVITAVDDHRIDDTQSLIAIVRAYRPGDTVKVTYLRGGKEDSTELKLGSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVW8</accession>
    <name>A0A0Q8VVW8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01390</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896636.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59705">
        <property type="protein sequence ID" value="KRC59705"/>
        <property type="gene ID" value="ASE19_01390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1630092at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="2"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="119" mass="12846" checksum="7E5271531D97F086" modified="2016-01-20" version="1">MKILIADDSRVMRQIVIRTLRQAGHGGHDIVEAENGREALEKVQTEAPDLVLSDWNMPEMNGIDCLSALRAAGSSVAFGFVTSEGSEEMRQRAASAGAAFLIAKPFTPEAFDDALRSVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VX75</accession>
    <name>A0A0Q8VX75_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22640</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892617.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58866">
        <property type="protein sequence ID" value="KRC58866"/>
        <property type="gene ID" value="ASE19_22640"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030987">
        <property type="entry name" value="AbiV"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18728">
        <property type="entry name" value="HEPN_AbiV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04498">
        <property type="entry name" value="AbiV_defense"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="228" mass="24490" checksum="E6EF8E4170EEAB52" modified="2016-01-20" version="1">MVPPREQLIALVHALLDNAASLVADARLLHDNQRHARGYALAALAGEEVGKVGVCLDRLLGSAALTDQQFRRAWQSHSEKLQGLVAYQVAFVDEVGPIDPGRLRQRPHVLGGRKMDAIYVDFRDGRICTPGEITDTETSDLLFGVEAAVAQLTAVLSPLTAGHIDVLELAGATVLAPLGRFMDSLEPDAAVSTMRDLVTRIQRVTAQDWASAIETDSVSALLGLDQPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXX6</accession>
    <name>A0A0Q8VXX6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chorismate mutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00805</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896744.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59597">
        <property type="protein sequence ID" value="KRC59597"/>
        <property type="gene ID" value="ASE19_00805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1980002at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004106">
        <property type="term" value="F:chorismate mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046417">
        <property type="term" value="P:chorismate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.59.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036263">
        <property type="entry name" value="Chorismate_II_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010951">
        <property type="entry name" value="CM_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036979">
        <property type="entry name" value="CM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002701">
        <property type="entry name" value="CM_II_prokaryot"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01817">
        <property type="entry name" value="CM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00830">
        <property type="entry name" value="CM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48600">
        <property type="entry name" value="SSF48600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01795">
        <property type="entry name" value="CM_mono_cladeE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51168">
        <property type="entry name" value="CHORISMATE_MUT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chorismate mutase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="103" mass="11207" checksum="53E76C6E859C6B4C" modified="2016-01-20" version="1">MSADDARAELHRLRSSIDNLDAALVHLLAERFKCTEQVGRLKASAGMPPADPAREAVQIARLRSMAESSGLDPHFAESILNVIIAEVIRNHEQFAEDAEDTGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMC3</accession>
    <name>A0A0Q8UMC3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">30S ribosomal protein S2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsB</name>
        <name evidence="7" type="ORF">ASE19_19980</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uS2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895926.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46150">
        <property type="protein sequence ID" value="KRC46150"/>
        <property type="gene ID" value="ASE19_19980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1623045at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01425">
        <property type="entry name" value="RPS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00291_B">
        <property type="entry name" value="Ribosomal_S2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001865">
        <property type="entry name" value="Ribosomal_S2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005706">
        <property type="entry name" value="Ribosomal_S2_bac/mit/plastid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018130">
        <property type="entry name" value="Ribosomal_S2_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023591">
        <property type="entry name" value="Ribosomal_S2_flav_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12534">
        <property type="entry name" value="PTHR12534"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00318">
        <property type="entry name" value="Ribosomal_S2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00395">
        <property type="entry name" value="RIBOSOMALS2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52313">
        <property type="entry name" value="SSF52313"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01011">
        <property type="entry name" value="rpsB_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00962">
        <property type="entry name" value="RIBOSOMAL_S2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 7" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="251"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="285" mass="31264" checksum="574CB8E2A16B7D4F" modified="2016-01-20" version="1">MAVVTMRQLLESGVHFGHQTRRWNPKMKRFILTDRNGIYIIDLQQSLAYIDRSYAFVKETVAKGGTIMFVGTKKQAQEAIAEQATRVGMPYVNQRWLGGMLTNFQTVHQRINRLKELDEVDFEDVAGSSRTKKELLQMRRERDKLNKSLGGIREMTRTPSAVWIVDTNKEHLAVEEARKLRIPIIAILDSNCDPDDVDFPIPGNDDAIRAVGLLTRVIADAAAEGLMARSGAGATTPAAAEPLAEWERELLEGAETPAADAAAEATEAPAAEAPVAEAADAPAEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMK4</accession>
    <name>A0A0Q8UMK4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GDSL family lipase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896007.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46236">
        <property type="protein sequence ID" value="KRC46236"/>
        <property type="gene ID" value="ASE19_20510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1247435at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGNH_hydro" evidence="1">
        <location>
            <begin position="10"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="252" mass="27613" checksum="6A5251268CB56DF2" modified="2016-01-20" version="1">MGNGYLRFAALGDSTTVGLGDPVPGGRWRGWARLLSESLQASYDVSFCNVAISGATATVVREQQLAEALAHRPDLASLLVGVNDTLRSTWSPDRLYDDLHHVAGELTASGATLMTVRWHDHGSVLGLPRLVVRPITERIGLLNEVYDDLHATYGGLRLDLALMPEVLDRANWSVDRFHPSETGHRALARAWAERLQAAGFELPLPGREPEGGCPPSWRRDVAWMVTEGGPWIGRRARDLGPWAVRRAMAAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMN7</accession>
    <name>A0A0Q8UMN7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20705</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896037.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46266">
        <property type="protein sequence ID" value="KRC46266"/>
        <property type="gene ID" value="ASE19_20705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1419056at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008526">
        <property type="entry name" value="YedI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30503">
        <property type="entry name" value="PTHR30503"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05661">
        <property type="entry name" value="DUF808"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016660">
        <property type="entry name" value="YedI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="166"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="223"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="287"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="325" mass="34195" checksum="A0447D4FD5256334" modified="2016-01-20" version="1">MSAGLFGLLDDVAAIAKMAAASVDDVGAAAGKATAKAAGVVVDDTAVTPQYVQGVAAARELPIVKQIAIGSIRNKLLIILPAALLLSELLPDLLPVILMIGGTFLAYEGAHKVWHLLSHHEEHDTPVAEVGPEAEKTMIAGAIRTDLILSAEIMVIALASVEDESFWARLAILVVVALVITVAVYGVVALIVKMDDVGLHLAQRPSAVAQKVGRGLVAFMPRLLSIISVVGTVAMLWVGGHILLANLDEVGWWHAPYEWVHDIEHDIEHAVHGVLGSVLAWLANTGISAVVGLVVGAVVVVVVQLLPFTGDKDPIERYDTDEPAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMP9</accession>
    <name>A0A0Q8UMP9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895999.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46228">
        <property type="protein sequence ID" value="KRC46228"/>
        <property type="gene ID" value="ASE19_20460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1995959at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022062">
        <property type="entry name" value="DUF3618"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12277">
        <property type="entry name" value="DUF3618"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="84" mass="9463" checksum="090892692554AA78" modified="2016-01-20" version="1">MSDTPSDIEREIEEARERLAGTIDQLLYRSHPKTIVGREVAQVKAYYVDATTGEPRTDNILKTVGGVVGVITFFVVVRRITRTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMQ2</accession>
    <name>A0A0Q8UMQ2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">PAP2_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_20805</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896055.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46284">
        <property type="protein sequence ID" value="KRC46284"/>
        <property type="gene ID" value="ASE19_20805"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026841">
        <property type="entry name" value="Aur1/Ipt1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14378">
        <property type="entry name" value="PAP2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="100"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="165"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="196"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="262"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="291"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="315"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="domain" description="PAP2_3" evidence="7">
        <location>
            <begin position="136"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="352"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="380" mass="40741" checksum="90FA15B399F9E597" modified="2016-01-20" version="1">MSNHQTGRRGAPPFALAWVAGLGLAALTVLFSTLEDIPIQDPDSLIPGYIRFPAIVLGAIAIDVVPRILAAAGRPGGGWAGRLRTSARTVMRERWPLSHWRFALNGVIAWYLCYAAFRNVKSMAPFVHDKIYDAPLADVDRFLFAGHDPAATLHAWFGTGLAAHFFSAVYIVWIALVPVSIAIALVWTRHARAGEWYVTAVAVDWALGAVLYVVLPTVGPVYSDPGAFATLPDTYVSDLQRSMWSDRLATLADPAHAGLQTIAAFASLHVGIMVTICLIVQLVGLHRWVRIASWVFLGLTALATVYLGWHFVVDVVAGAALGAFAVWIAGLATGNRIGWRARLVVDRDEQVSPAAGPSSAAHPGALASRSAPLPDHPATD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN25</accession>
    <name>A0A0Q8UN25_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20135</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895950.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46175">
        <property type="protein sequence ID" value="KRC46175"/>
        <property type="gene ID" value="ASE19_20135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="62" mass="6771" checksum="797B8E0FB5BEA95F" modified="2016-01-20" version="1">MLFVVLAILLSLALSGVVVLYVAYPHRGEQVPGVPWLGDAMARAADAAPLIEDEERDLLRLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UND8</accession>
    <name>A0A0Q8UND8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cystathionine gamma-synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_22060</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the trans-sulfuration enzymes family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896272.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46502">
        <property type="protein sequence ID" value="KRC46502"/>
        <property type="gene ID" value="ASE19_22060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="637281at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019346">
        <property type="term" value="P:transsulfuration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00614">
        <property type="entry name" value="CGS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000277">
        <property type="entry name" value="Cys/Met-Metab_PyrdxlP-dep_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11808">
        <property type="entry name" value="PTHR11808"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01053">
        <property type="entry name" value="Cys_Met_Meta_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001434">
        <property type="entry name" value="CGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR001434-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="393" mass="41182" checksum="B92EFDF7D3DC8DD2" modified="2016-01-20" version="1">MSDNHIDEHLDGAGFETRAIHAGYAPDPTTGAVIPPIYATSTYAQDGVGGLRNGYEYSRSANPTRTALESTLAALEGARHGFAFASGLAAEDTLIRALCRPGDHVVLPNDAYGGTFRLFDKVATNWGLTHSPAPVTDPDAVRAAILPGQTKLVWLETPTNPMLSIGDIEALAAVAHDAGARLVVDNTFASSYLQQPLALGADVVVHSTTKYAGGHSDVVGGALVVDDAELAEQIGFHQNAIGGVAGPFDSWLVLRGLKTLALRMERHSDNAERIAAFLGQHPAVSQVIYPGLADHPGHAVASRQMKRYGGMVSFRVTGGEEQALAVCAATKVFTLGESLGGVESLIEHPGRMTHASVAGTDLEVPADLVRLSVGIETSEDQLADLDRALGSTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNR6</accession>
    <name>A0A0Q8UNR6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FAD-binding FR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21575</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896404.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46635">
        <property type="protein sequence ID" value="KRC46635"/>
        <property type="gene ID" value="ASE19_21575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1630289at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013113">
        <property type="entry name" value="FAD-bd_9_SIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007037">
        <property type="entry name" value="SIP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039374">
        <property type="entry name" value="SIP_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30157">
        <property type="entry name" value="PTHR30157"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08021">
        <property type="entry name" value="FAD_binding_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04954">
        <property type="entry name" value="SIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="233" mass="24909" checksum="44FEFF50D674F06F" modified="2016-01-20" version="1">MVRIHFTGDLAAFEGSAFTDRYVKLVFGDPAELERGGRPTLRTYTVVAPDAAAGTLAIDFVVHGAEGIAGPWASTALPGDTIPVRGPGGAYAPDPAADWHLFAGDEAAIPAIRQSLAALPADAEGYAVLQVEGPAHEQEVATPAGVTLTWLHRSDAAHPSLPDAVRALPWREGRVHAFVHGEGQAVMKEIRPYLVGERGVPRDDVSVSAYWKQGRTEEAFREWKAELAAEETK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU80</accession>
    <name>A0A0Q8UU80_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893151.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48748">
        <property type="protein sequence ID" value="KRC48748"/>
        <property type="gene ID" value="ASE19_17610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2077016at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="70" mass="7717" checksum="8ABA0AB437161E09" modified="2016-01-20" version="1">MANDGEYWFCLKHHAVEGAEGCPNKDRLGPYDTEAEAARAIEHAAERTAAWDNDPDWNDDAAAGPDSDRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUD6</accession>
    <name>A0A0Q8UUD6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">GAF domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17850</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893191.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48789">
        <property type="protein sequence ID" value="KRC48789"/>
        <property type="gene ID" value="ASE19_17850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GAF" evidence="2">
        <location>
            <begin position="42"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="391" mass="41635" checksum="8542B04A075ADEC0" modified="2016-01-20" version="1">MSEPPGEGVAERRVSGVQDRRASGQRDRLVLDAFLAISADLSLDGVLSRIVEIASRLSGAQYVALGVLGSVGERRLRTLVLHGFSDEVAERIGILPTGQGLLGLIIDRPEPLRLHDIAEHPASCGFPEGHPPMRSFLGVPVRIRDQVFGNLYLTEKAGGGDFTAEDEEVVVALAAAAGVAIENARLYEETARREAWARATADIAALVSEESDLAAACAAVVSRARAVASADAAWIDLIHPEREPAVLGHDGSPLAPDDAGLLLTVPFVPTAGASGSLSLAWASEKAEGGRALERELVAAYAEQAALALQLAAAREDQRLLSVFEDRDRIGRDLHDQVIQRLFAVGLSLQGTLRLVERPEVASRIEEAVDDLDVTIKNIRAAIFGLNAEEPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUF9</accession>
    <name>A0A0Q8UUF9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutathione S-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21755</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896220.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46451">
        <property type="protein sequence ID" value="KRC46451"/>
        <property type="gene ID" value="ASE19_21755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1560019at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004046">
        <property type="entry name" value="GST_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00043">
        <property type="entry name" value="GST_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13409">
        <property type="entry name" value="GST_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="2">
        <location>
            <begin position="89"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="243" mass="26714" checksum="8C2ACFBCAA50F07E" modified="2016-01-20" version="1">MIDLYYDLTPNGRKIHMALEELGLPYDVHWVAVKEGEQFREEFLRVNPNAKIPAIVDHDGPGGKPVRIFESGAILQYLAEKTGRLLPEGPADRWEATCWVYWQVANQGPAAGNAAHFTTYAPDAGVDDEYSTARFVNETKRTCEVLDRQLSDGREFLVGSELSIADLACFPWTRVLKAYGVALADYPALEAWSQRISSRPSAKAKVAERPANSGMPTGLSTEQYQRLFGVAPTPAPTPSTASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV83</accession>
    <name>A0A0Q8UV83_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Acetaldehyde dehydrogenase</fullName>
            <ecNumber evidence="3">1.2.1.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Acetaldehyde dehydrogenase [acetylating]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_19515</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>acetaldehyde + CoA + NAD(+) = acetyl-CoA + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:23288"/>
            <dbReference type="ChEBI" id="CHEBI:15343"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.2.1.10"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the acetaldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.10" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893865.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49134">
        <property type="protein sequence ID" value="KRC49134"/>
        <property type="gene ID" value="ASE19_19515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1432332at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008774">
        <property type="term" value="F:acetaldehyde dehydrogenase (acetylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019439">
        <property type="term" value="P:aromatic compound catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01657">
        <property type="entry name" value="Ac_ald_DH_ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003361">
        <property type="entry name" value="Acetaldehyde_dehydrogenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015426">
        <property type="entry name" value="Acetylaldehyde_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000534">
        <property type="entry name" value="Semialdehyde_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09290">
        <property type="entry name" value="AcetDehyd-dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01118">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015689">
        <property type="entry name" value="Actaldh_dh_actl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00859">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03215">
        <property type="entry name" value="ac_ald_DH_ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0058">Aromatic hydrocarbons catabolism</keyword>
    <keyword evidence="2 3" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Semialdhyde_dh" evidence="4">
        <location>
            <begin position="6"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="3">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="158"/>
            <end position="166"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC49134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="300" mass="31777" checksum="346ED162952A5B86" modified="2016-01-20" version="1">MGKKLTAAIVGPGNIGTDLLYKLLRSDVVEPRWMIGVDASSEGLRLAADKGLEVSHEGVDWLLKQDELPDLLFEATSAYVHREYAPRYAEAGIRAVDLTPAAVGPAVIPPVNGLAHLDALNVNMITCGGQATIPMVNAVSRVTPVPYAEIVASVSSASAGPGTRANIDEFTRTTSAGVETIGGAEKGKAIIILNPAEPPMIMRDTIFCAVDPDADTDAIAESVHRMEKAVQEYVPGYRLLQEPQFDGPSDFTRGMRRVSIFVEVEGAGDFLPPYAGNLDIMTAAAAQVGENIARSILGAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVL7</accession>
    <name>A0A0Q8UVL7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896139.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46368">
        <property type="protein sequence ID" value="KRC46368"/>
        <property type="gene ID" value="ASE19_21290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2172754at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="14"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="197" mass="20989" checksum="168224572D21AA7F" modified="2016-01-20" version="1">MPPPPRPPYDERSVAALLLLGTVIAAPVSVGLGVLGIRATRGGERRGRWCAVLAVVGGLLVPLVLGVGALLLRGTEERASDRLDGVATGDCVNVRVDDETFAATVIGTSCTDSHDAEVLHRGELDVFQVGDFLDVPADRLCRPLISERYRTELSTRRYVLTVILVGKPWEPAEEDEFLCLAGFVGGEQMSAPIGLAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVM9</accession>
    <name>A0A0Q8UVM9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH marR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19495</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893473.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49071">
        <property type="protein sequence ID" value="KRC49071"/>
        <property type="gene ID" value="ASE19_19495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1626703at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="9"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="139" mass="15306" checksum="B9140E69012E7E60" modified="2016-01-20" version="1">MSSSAPVLDDLICFDLYAASRQVTAAYRPILGELGLTYPQYLVLVVLGAHDEMLIKDVGRELRLDHATLSPLLRRLERDGLLTRRRSASDERAVVVALTAEGRAVHARFGEVHCRIAEALGITAEEAAQLRDLLRNLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXF5</accession>
    <name>A0A0Q8UXF5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA alkylation repair protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22290</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896309.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46541">
        <property type="protein sequence ID" value="KRC46541"/>
        <property type="gene ID" value="ASE19_22290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1933111at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014825">
        <property type="entry name" value="DNA_alkylation"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08713">
        <property type="entry name" value="DNA_alkylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="SSF48371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="220" mass="24843" checksum="BCA5FF7D9C3B4280" modified="2016-01-20" version="1">MSLSAAVRTSLRAAADARLAPGQQAYMKSEMPFLGVRVPEVRRLVRSLVRELGVTSRDELVPTARELWDDATHREERYAAAALLGLRPLRGDLSLVPFHEHVARTGAWWDHVDEAAHRIADLHDAWPSETAAIVRVWAVDDLLWVRRLAIISQLGRRDRTDLDLLAAVIEPNLADGEFFVRKAVGWSLREAAKTDPDWVRSYVEGHELSPLSRREALKHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXN2</accession>
    <name>A0A0Q8UXN2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Guanylate cyclase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_22210</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the adenylyl cyclase class-3 family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896297.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46529">
        <property type="protein sequence ID" value="KRC46529"/>
        <property type="gene ID" value="ASE19_22210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="729263at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004016">
        <property type="term" value="F:adenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009190">
        <property type="term" value="P:cyclic nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07302">
        <property type="entry name" value="CHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001054">
        <property type="entry name" value="A/G_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018297">
        <property type="entry name" value="A/G_cyclase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00211">
        <property type="entry name" value="Guanylate_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00044">
        <property type="entry name" value="CYCc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00452">
        <property type="entry name" value="GUANYLATE_CYCLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50125">
        <property type="entry name" value="GUANYLATE_CYCLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="106"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="133"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="156"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="180"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="domain" description="Guanylate cyclase" evidence="4">
        <location>
            <begin position="253"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="429" mass="46562" checksum="89DBF3BE7D386AD1" modified="2016-01-20" version="1">MGLKSISGWLQEQHAQLHMARWMLEFDDDEAEQEFVVYDDMRGLNEGRFALGIGIAFTLAYGVVDILVLDQVLLAVALVRLVVVALFAGALLVIGRAIWVAHRLQLASALLLTSTLLLLGTAMGQAADFPTEYLSTSCTVTLLGAVGLLRLRMHTVLVMTAVYAAVCLSLPGALGGVDMLARHVAPTLGLASIAVLIGFSLEKLRRTDYLRQQEVEMEQARSDELLHNVLPATIAQRLRTEPGAIAESAPDVSVLFSDIVGFTPVSESLTPEELVQLLDTMFREFDELCDQRGIEKIKTVGDAYMAVAGLPVPDADHAASLAELALDMQRTLTRLSPQWPSPIAMRIGIASGPVVAGVIGRRKFTYDLWGDTVNTASRMESHGRPHRIQVSQSTHALLEARYAFSEPQTVEVKGKGPMTTYFLLGSGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXQ5</accession>
    <name>A0A0Q8UXQ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fatty acid--CoA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15500</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893493.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50024">
        <property type="protein sequence ID" value="KRC50024"/>
        <property type="gene ID" value="ASE19_15500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1015470at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="9"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="408"/>
            <end position="479"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="488" mass="52045" checksum="0DFD618FD358F369" modified="2016-01-20" version="1">MDTIPAVLRDAAQRYGDRPAYVENDQVLTFADLLDRVERTASAYRDAGVRRGDRIVLWAPNSTAWVIAALAVSWSGATLVPANTRYLGAEVAEIVERVGAALVVVEDGFLGRHQIDELRAEGVSRSVVTLASVTAADLPSGAPFDDEVGPDDVADILFTSGTTGRPKGAMSAHRQTVGVARAWGELGGVTAADRYLVVNPFFHSFGYKVGIVTGLTTGATLYPLATFDLERTMDLIESERISVLPGAPAVYQSLLTAPGREERDLSSLRLAVTGAAVVPVVLIERMREELGIDQVVTAFGMTEAVVVTMARNGDDAELVATTCGRAIPGMETRIDAASPGEAGELLVRGEFVMLGYLDDPAATAEAIDADGWLHTGDVGVLDGAGNLRITDRLKDMYISGGFNVYPAEVEQVLMRLDGVDDVAVVGVPDERMGEVGKAYVVGSAPAEEVLAFARTRLANFKVPRFVESIDVLPRNLSGKVLKTELRKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY40</accession>
    <name>A0A0Q8UY40_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16335</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893642.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50174">
        <property type="protein sequence ID" value="KRC50174"/>
        <property type="gene ID" value="ASE19_16335"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041581">
        <property type="entry name" value="Glyoxalase_6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18029">
        <property type="entry name" value="Glyoxalase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyoxalase_6" evidence="1">
        <location>
            <begin position="6"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="153" mass="16616" checksum="8B713C3C031D18E7" modified="2016-01-20" version="1">MSRHVQITFDAHDPRAQSRFWREALGYVIPGPPGVHLADGADPLEAWDAFLEGIGVPADQRNSRSAAEDPDGVGPRLFFQQVPEEKVAKNRVHLDVRAAPGLAGEERMAALEAECERLVGLGARRVARFEPAPPMGAGHIVMADPEGNEFCLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYD0</accession>
    <name>A0A0Q8UYD0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF4190 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_16880</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893739.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50270">
        <property type="protein sequence ID" value="KRC50270"/>
        <property type="gene ID" value="ASE19_16880"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2061154at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025241">
        <property type="entry name" value="DUF4190"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13828">
        <property type="entry name" value="DUF4190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="73"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="114"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4190" evidence="3">
        <location>
            <begin position="72"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="147" mass="15364" checksum="14AAA800424091F9" modified="2016-01-20" version="1">MTSTPPWGEQPEDQDPQQYGQYQPPQQPTPGEPAYGQQPPAQQPYGQQPYGQQPYGGYGGYGYAAPPPTNGMAIASLVVSIVGLFACCGGPSIVGAILGHVARKQINERGEAGAGLALAGIIVGWIAFAIFVIVVAFYSVVIIAEET</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYL3</accession>
    <name>A0A0Q8UYL3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_16420</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893658.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50357">
        <property type="protein sequence ID" value="KRC50357"/>
        <property type="gene ID" value="ASE19_16420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1249292at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024671">
        <property type="entry name" value="Atg22-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11700">
        <property type="entry name" value="ATG22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="71"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="102"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="126"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="167"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="198"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="257"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="294"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="324"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="348"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="384"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="413"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="257"/>
            <end position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC50357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="451" mass="48684" checksum="076BA3D4B42362D3" modified="2016-01-20" version="1">MSDQSGIADLRPLYDAREQRAWYFTDWAASAFQTTVAGVLFAPYLISVAENAVGEHGRIHLLGLSIAPGSLPSYVITLSTVLSVFFYPVIGALADRTARKPDLLVAFSWIGATAAGALFFMSGENWMFGSIAFIVANLAGGAAIVVSDSVLPLISREDERDRVSSVGWAYGYAGGGLLLAVNFAVVTFHDALGLDKEMAVRLSLLSAAVWWAAFMVIPWRGIRRHEPVDVEEVEGGLLARSFGQLWATLKDLRNYPVALTFLLAYLFFNDGIQTVIASASTFGIEELDFEEGTVLGTYLLVQVVAMFGAIGFGRAAARFGAKRVILAGLVGWMGIVTVALVVPKGQLVPFLVLGVAIGIVLGGTQALARSYFSLFIPRGKEAEYFSLYHAMDRGTSWFGTLTFGLVYQYTDSYRPAIFALIAFFVVGGLLLLRVDTERGIREAGNVAPPVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1T3</accession>
    <name>A0A0Q8V1T3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA mismatch repair protein MutT</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896469.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51402">
        <property type="protein sequence ID" value="KRC51402"/>
        <property type="gene ID" value="ASE19_15045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1538300at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="1">
        <location>
            <begin position="8"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="141" mass="14888" checksum="B7E29AF9CC100438" modified="2016-01-20" version="1">MDDRLAVREIEVVGAVVVRDGRVLCAQRGPDGSLSGKWEFPGGKVEAGESPTAALVREINEELRCSVEVGAPIATTRYDDGTVVVVLTTFWCRLVAGTPALTEHSALRWVGPGELAALDWAPADVPAVEAVTGALVSFETD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2J1</accession>
    <name>A0A0Q8V2J1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_18020</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893217.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48816">
        <property type="protein sequence ID" value="KRC48816"/>
        <property type="gene ID" value="ASE19_18020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1488093at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="9"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="70"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="101"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="148"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="195"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="251"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="66"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC48816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="282" mass="30972" checksum="9BB472CB92835835" modified="2016-01-20" version="1">MRRGRFTGYWLMLPAALWLGVFFVIPFYSLLATSLYDPEGSVLTGYDVTYHVANFWDAISEHWDELFRSLWYAGAATLICAALGYLLAYAIAFKAGRWRNFLLVLVIAPFFTSFLVRTLSWKLILADDGFVVDTLQTLHLMGEDGRLLATPVAVIAGLVYNFLPFMVLPLYASLEKIDGRLVEAASDLYASPTRGFLKVTLPLSMPGLVAGTLLTFIPAAGDYINAQLLGSTNQRMVGNVIQDLFTDTGDYAAAGALSVTLMAIIVGLVVIYIRKAGTEELL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5F1</accession>
    <name>A0A0Q8V5F1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptide ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_09080</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894523.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52586">
        <property type="protein sequence ID" value="KRC52586"/>
        <property type="gene ID" value="ASE19_09080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1734230at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="18"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="80"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="111"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="138"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="193"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="246"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="76"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="272"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="300" mass="31660" checksum="9C03C4EA0D2658FA" modified="2016-01-20" version="1">MTHPTTILALWRVPSARFALLVLAGVGFLALFGGALAPHDPLQQYTDRVLQGPSADHLLGTDYVGRDVLSRLMEGTRLSVVGAVEAVAIGGLLGVPAGLVSAWLGPRLEWVTLRISDTLVVLPFTVFAIAVAGTLGNGLQQAMVAIGVLISPIFYRVTRAATLGLRKVQYVEAAELMGATEWWTLRKHIWSKVLPNVAVTAAHVTGSALLVVASLAFLGLGVTPPAPTWGGMLSSDLGYLAQQPWAPVYPAVLMMATVGSLNLLADAIRDATGATASPRRRPRPSPSTSVREERPDVVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5H6</accession>
    <name>A0A0Q8V5H6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD-linked oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09685</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894631.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52693">
        <property type="protein sequence ID" value="KRC52693"/>
        <property type="gene ID" value="ASE19_09685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1770293at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016628">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011777">
        <property type="entry name" value="Geranylgeranyl_Rdtase_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02032">
        <property type="entry name" value="GG-red-SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_3" evidence="1">
        <location>
            <begin position="8"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="414" mass="44194" checksum="90FA71E9F88CFB6F" modified="2016-01-20" version="1">MTAAPALRTDVLVVGAGPAGSAAAAWAARSGADVMLADAAVFPRDKTCGDGLTPRAIGELERLGLRDWVRSHTVNQGLRAHGFGQTLHLPWPGGHLPDWGSAVARTELDDHLRTTALDAGATGLEDARAVGVRMDGERVAAVVLKDGREIACQRLVVADGVRSPLGKVLGREWHRDTVYGVAGRCYVKSTRADDPWISSHLELRGEQNEILSGYGWIFPLGGGAGEVNLGAGTLATAKRPTDVAIKPLMKLYADGLREEFGLGDELRMPTSALLPMGGAVSHVAGRNWALIGDAAACVNPLNGEGIDYGLETGRLVAELLAETPDVDLGAVWPEILRAHYGESFSIARRLAGLVTVPRLLPALGPVGMRSDLLMTLALRWMGNLVTEEDRDRSARVWRWAGRRSLARDARPPFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5J8</accession>
    <name>A0A0Q8V5J8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Histidine--tRNA ligase</fullName>
            <ecNumber evidence="4">6.1.1.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Histidyl-tRNA synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_19145</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-histidine + tRNA(His) = AMP + diphosphate + H(+) + L-histidyl-tRNA(His)</text>
            <dbReference type="Rhea" id="RHEA:17313"/>
            <dbReference type="Rhea" id="RHEA-COMP:9665"/>
            <dbReference type="Rhea" id="RHEA-COMP:9689"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57595"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78527"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.21"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.21" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49010">
        <property type="protein sequence ID" value="KRC49010"/>
        <property type="gene ID" value="ASE19_19145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="333570at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004821">
        <property type="term" value="F:histidine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006427">
        <property type="term" value="P:histidyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00773">
        <property type="entry name" value="HisRS-like_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015807">
        <property type="entry name" value="His-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041715">
        <property type="entry name" value="HisRS-like_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004516">
        <property type="entry name" value="HisRS/HisZ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13393">
        <property type="entry name" value="tRNA-synt_His"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001549">
        <property type="entry name" value="His-tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00442">
        <property type="entry name" value="hisS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 13" id="KW-0436">Ligase</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="12">
        <location>
            <begin position="19"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="416"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="419"/>
            <end position="450"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00030619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC49010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="450" mass="49771" checksum="06BD05120DCEA223" modified="2016-01-20" version="1">MPIRPLSGFPELLPAQRHVEQEVIATLARTFELHGFANIETRAVEPMDQLLRKGDTSKEVYVLRRLQEEGGKDKGIGLHFDLTVPFARYVLENAGKLEFPFRRYQVQKVWRGERPQEGRFREFTQADIDIVGRDDLPFHHDVEVARVMLEALGRLTFLPGFRLQVNNRKLIQGFYAGLGVTGEGIDEVMRLVDKLDKLDPSRVRQLLLDEAGISEEQADKALALATIRTQDDSFVDRVRALDVKHDLLDEGLDELATLVRACAPLATATVRIEADLSIARGLDYYTGTVFETRLDGYESLGSICSGGRYDALASDGRTTYPGVGISLGVSRVLVPLVQRGVLTADRSVPSVVLVAVTDEETRAEADAIATALRAQGIPCEVAPTAAKFGKQIRHAERRGIPYVWFGSEVKDIRSGNQVAADPATWQPPTQDLRPQVVTTTEDSNTEGNPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5T2</accession>
    <name>A0A0Q8V5T2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Virulence factor Mce</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_09710</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894636.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52698">
        <property type="protein sequence ID" value="KRC52698"/>
        <property type="gene ID" value="ASE19_09710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="40"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="123"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="330"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="386"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="330"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="425" mass="45881" checksum="89BF3A2A3BBFCFF2" modified="2016-01-20" version="1">MITRRTKIQLLIFAVITLVGVTFVGARYAQLDRLVVDGDYTVTAHYPDSGGIFTGAEVTYRGVGIGKVGDLVLTSKGVDVQLDIDNKWDKIPRDTIALVGNRSAVGEQYVELQPQTDDGPFLVEGSEIDDVATPIATEKLLGDLSATVSSVDRDSLATTVEELGKAFAGTGPDLQKIIDTGNSFIETANDNFDVTTALIRDSNTVLQGQLASQTSLRTFADQLSKFTASLAGSDKDLRKVIDSGSIAATQLRTFLEQNGVELSELLSNLVTTGRIVVKHLPGIKQLLVVYPYAVAAGQVVVGKSPNGHWDAHFGLILNPTSTPCYDGYLKKRRNPESERSDDPAMPDVRCNEPITKSNPRGPQNLRRVAPGGTSYDIAAHYDPRTGLTWDVPEDSSGAPGTVSSPNLGEDSWKWLYLQPMLSTNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5W5</accession>
    <name>A0A0Q8V5W5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09715</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894637.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52699">
        <property type="protein sequence ID" value="KRC52699"/>
        <property type="gene ID" value="ASE19_09715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="42"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="2">
        <location>
            <begin position="125"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="481" mass="50903" checksum="8D4655353C545D5C" modified="2016-01-20" version="1">MKSIRTRARAAAALLVGMVVLTGCDFDVYQLPLPGGADTGDDPIEVTVKFDDVLDLVPKSSVKVNDVTVGQVTDVELDGYQAVVKLKLRKDVDLPDQPVATIRQTSLLGEKFVSLAAPARGGSGQLSDGDVIEDGGKNPEVEEVLGALSLVLNGGGVAQLKTIASELNLALDGREDSAKSVLTQVRSLMSRLDERKGDIVDAIEAVNRLAVSARQHQGSIDQALEELPSALESLDRQRDDLVAMLDGLTKLSDVGVRVINTTQASTVNSLRSLDPILTQVAKAGDNFAKGFSTFLTYPFIDEAVGRDPQVARNLHMGDYVNLSIDLQLDLGNLRLPDVACIATNALPDLPLDQLVDLKTLCRGVTTTLQGCLRTPPDVAACSKLPGYLIDNVCAAVKILCGGGLNLPKVRGTASSPTASGSPLSNLLGSVLQGNGLNRAVPGRTDDVNELWRAFDEAYDTDLVSIYSGPLLVSATERGADR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V689</accession>
    <name>A0A0Q8V689_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">DNA repair protein RadA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">radA</name>
        <name evidence="8" type="ORF">ASE19_10340</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.</text>
    </comment>
    <comment type="function">
        <text evidence="5">Plays a role in repairing double-strand DNA breaks, probably involving stabilizing or processing branched DNA or blocked replication forks.</text>
    </comment>
    <comment type="domain">
        <text evidence="5">The middle region has homology to RecA with ATPase motifs including the RadA KNRFG motif, while the C-terminus is homologous to Lon protease.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the RecA family. RadA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894739.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52806">
        <property type="protein sequence ID" value="KRC52806"/>
        <property type="gene ID" value="ASE19_10340"/>
    </dbReference>
    <dbReference type="OrthoDB" id="505485at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000725">
        <property type="term" value="P:recombinational repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01498">
        <property type="entry name" value="RadA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004504">
        <property type="entry name" value="DNA_repair_RadA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020588">
        <property type="entry name" value="RecA_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041166">
        <property type="entry name" value="Rubredoxin_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18073">
        <property type="entry name" value="Rubredoxin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00416">
        <property type="entry name" value="sms"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50162">
        <property type="entry name" value="RECA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5 6" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 5 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0346">Stress response</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="2 6" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RECA_2" evidence="7">
        <location>
            <begin position="67"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="region of interest" description="Lon-protease-like" evidence="5">
        <location>
            <begin position="352"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="RadA KNRFG motif" evidence="5">
        <location>
            <begin position="253"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="96"/>
            <end position="103"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="478" mass="50499" checksum="BD597D03820B95C1" modified="2016-01-20" version="1">MASKTRSNYRCAECGWTTAKWVGRCGECQAWGSVTEVPVAAAVSTSRTTASAVTRQAIPIGQVPADHAVHVASGVPELDRVLGGGLVPGAAVLLAGEPGVGKSTLLLEVAARTAQRQQRTLYVTGEESAAQVRLRADRTGGIHDELYLAAETDLGAVLTHIDQVRPQMVVVDSVQTIGAADVDGVPGGVTQVKEVAQALVRMAKARDITVVMIGHVTKDGGIAGPRVLEHLVDVVLHFEGSRDSRFRMVRAVKNRFGPVDEVGCFDLGPEGIRAVDDPTGIFTERHHGRVPGTCVAVTMEGRRPLLAEVQALVTLSPAERPRRTTSGLDGSRLAMILAVLQQHCGIKLHQHDVFASTVGGARLTDPGSDLAVAVALASSTFVSAPPAGVVAMGEIGLSGELRRVRDLRLRLAEAARLGFQMAVVPADPGQAQGQRGPARDRDIDGMRVIEAPDVMSALRLLNLDRRTKHALEVVEGAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6T0</accession>
    <name>A0A0Q8V6T0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molybdopterin dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894848.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52916">
        <property type="protein sequence ID" value="KRC52916"/>
        <property type="gene ID" value="ASE19_10950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1017413at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005107">
        <property type="entry name" value="CO_DH_flav_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036683">
        <property type="entry name" value="CO_DH_flav_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002346">
        <property type="entry name" value="Mopterin_DH_FAD-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03450">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00941">
        <property type="entry name" value="FAD_binding_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01092">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55447">
        <property type="entry name" value="SSF55447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="292" mass="30420" checksum="A2FB29DF7EF6D1D3" modified="2016-01-20" version="1">MKPAPFDYVRPGSLGEALQALAGHPEAKVLAGGQSLVPLLSMRLAAPAVLVDINGLPDLDHVRADADGVRIGALARHAQVLRDPDVARVQPLVPLALADVAHATIRNRGTTVGSLVHADAAAEMPMVLRLLDGSVDVVGPQGRRTIAADDLYVGPLESSLHHDEIAVEAFFPALAGGSGVAFEEIARRHGDYAMCGVAAVVAVEDGRVVSARAGYLSVSDVPAVVDLTEALDGETTPAALARAADAALAVLEPETDIHATADYRAHLARVLTARVVTAAHQHARQHARQEQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V714</accession>
    <name>A0A0Q8V714_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">(4Fe-4S)-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_11410</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894926.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52996">
        <property type="protein sequence ID" value="KRC52996"/>
        <property type="gene ID" value="ASE19_11410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="688908at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019516">
        <property type="term" value="P:lactate oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004452">
        <property type="entry name" value="4Fe-4S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024569">
        <property type="entry name" value="4Fe-4S-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024185">
        <property type="entry name" value="FTHF_cligase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003741">
        <property type="entry name" value="LUD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47153">
        <property type="entry name" value="PTHR47153"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11870">
        <property type="entry name" value="DUF3390"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02589">
        <property type="entry name" value="LUD_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="LUD_dom" evidence="7">
        <location>
            <begin position="75"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="9">
        <location>
            <begin position="317"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3390" evidence="8">
        <location>
            <begin position="405"/>
            <end position="481"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF11870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC52996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="489" mass="52981" checksum="8567B32C886C1A40" modified="2016-01-20" version="1">MSTPHTFVGMPRFPEAARAALADTQLRHNLAHATGVIRGKRAAVVAEVENWEELRLAGAAVKERALLGLDAQLVQLEESLTARGAVVHWARDAEEANRIVIDVARAHAVDEVVKVKSMVTQEIGLNEALEASGIAAWETDLAELIVQLGGDLPSHILVPAIHRNRAEIRDVFRRRMGQVGRPAPDDLTDEPAVLAGAAREHLREKFLRARMAVSGANFAVADSGTLVVVESEGNGRMCLTLPEVLVSIVGIEKVVPTWAELDPLLRLLPRSSTGERMNPYTSTWTGITPGDGPQEVHVVLLDNGRTRALADEVGRQALRCIRCSACLNVCPVYERTGGHAYGSVYPGPIGAILNPLLKGTGDPQTDSLPYASSLCGACFEACPVRIDIPEVLVHLRSKVVDSHRDDRVPKPEAVAFRGAAWAFADARRLDRAERLSSVAGRVLRRRGRTSLGRLPGPGGAWTDARDLPVPPAESFRDWWKRTDGGRCDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V733</accession>
    <name>A0A0Q8V733_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">CTP synthase</fullName>
            <ecNumber evidence="9">6.3.4.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Cytidine 5'-triphosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Cytidine triphosphate synthetase</fullName>
            <shortName evidence="9">CTP synthetase</shortName>
            <shortName evidence="9">CTPS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">UTP--ammonia ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">pyrG</name>
        <name evidence="12" type="ORF">ASE19_17240</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + H2O + L-glutamine + UTP = ADP + CTP + 2 H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:26426"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + NH4(+) + UTP = ADP + CTP + 2 H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:16597"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>H2O + L-glutamine = L-glutamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15889"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="9">Allosterically activated by GTP, when glutamine is the substrate; GTP has no effect on the reaction when ammonia is the substrate. The allosteric effector GTP functions by stabilizing the protein conformation that binds the tetrahedral intermediate(s) formed during glutamine hydrolysis. Inhibited by the product CTP, via allosteric rather than competitive inhibition.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Pyrimidine metabolism; CTP biosynthesis via de novo pathway; CTP from UDP: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="9">CTPSs have evolved a hybrid strategy for distinguishing between UTP and CTP. The overlapping regions of the product feedback inhibitory and substrate sites recognize a common feature in both compounds, the triphosphate moiety. To differentiate isosteric substrate and product pyrimidine rings, an additional pocket far from the expected kinase/ligase catalytic site, specifically recognizes the cytosine and ribose portions of the product inhibitor.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the CTP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.2" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893802.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50333">
        <property type="protein sequence ID" value="KRC50333"/>
        <property type="gene ID" value="ASE19_17240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="783657at2"/>
    <dbReference type="UniPathway" id="UPA00159">
        <property type="reaction ID" value="UER00277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003883">
        <property type="term" value="F:CTP synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044210">
        <property type="term" value="P:'de novo' CTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03113">
        <property type="entry name" value="CTPS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01746">
        <property type="entry name" value="GATase1_CTP_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01227">
        <property type="entry name" value="PyrG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004468">
        <property type="entry name" value="CTP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017456">
        <property type="entry name" value="CTP_synthase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033828">
        <property type="entry name" value="GATase1_CTP_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11550">
        <property type="entry name" value="PTHR11550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06418">
        <property type="entry name" value="CTP_synth_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00337">
        <property type="entry name" value="PyrG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 9" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="4 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 9" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CTP_synth_N" evidence="11">
        <location>
            <begin position="12"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="domain" description="GATase" evidence="10">
        <location>
            <begin position="314"/>
            <end position="544"/>
        </location>
    </feature>
    <feature type="region of interest" description="Amidoligase domain" evidence="9">
        <location>
            <begin position="1"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="region of interest" description="L-glutamine binding" evidence="9">
        <location>
            <begin position="395"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for glutamine hydrolysis" evidence="9">
        <location>
            <position position="394"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="526"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="528"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="22"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="23"/>
            <end position="28"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="160"/>
            <end position="162"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <note>allosteric inhibitor</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="200"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="254"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="367"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="418"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="479"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF06418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC50333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="571" mass="62310" checksum="6FA3891F8AD000B3" modified="2016-01-20" version="1">MASGSGTNRQAKHLFVTGGVASSLGKGLTASSLGRLLRSRGLRVTMQKLDPYLNVDPGTMNPFQHGEVFVTNDGAETDLDIGHYERFLDTDLNQIANVTTGQVYSSVIAKERKGEYLGDTVQVIPHITNEIKDRILAMGRGTGDDAVDIVITEIGGTVGDIESLPFLEAARQVRHDIGRDNCFFLHVSLVPFIGPSGELKTKPTQHSVAALRQVGIQPDAVVCRADRELPESIKKKISLMCDVDQDAVVTAPDAPSIYDIPKVLHRQGLDAYVVRRLNLPFRDVDWTVWDDLLRRVHHPKEDVTIALVGKYIDLHDAYLSVTEALRAGGFAHEAKVHLRWVASDECETPAGATRHLSDVDAICVPGGFGIRGLEGKLGALTYARAHGIPTLGLCLGLQSMVIEYARTELGLTKAGSTEFDPDTPEPVIATMEEQKSIVDGSGDLGGTMRLGLYPATLTPGSIAAEVYGAESIEERHRHRYEVNNAYRAQLEEAGLVFSGINPDLDLVEFVELPRDVHPYYIGTQAHPELRSRPTRPHPLFAGLVGAAIARQRETRLEIDESGLHPEPVDED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7D5</accession>
    <name>A0A0Q8V7D5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">NfeD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_16895</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893742.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50273">
        <property type="protein sequence ID" value="KRC50273"/>
        <property type="gene ID" value="ASE19_16895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1951939at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002810">
        <property type="entry name" value="NfeD-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01957">
        <property type="entry name" value="NfeD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="51"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="domain" description="NfeD" evidence="3">
        <location>
            <begin position="57"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="158" mass="16288" checksum="03282A129B1EACF8" modified="2016-01-20" version="1">MDWLRDHLWETWLAVGIALALAEMLSLDLFLLMLAGGAVAGMGAAFVTDSVVVQVLVASAAALLLLVGVRPPLVRRLHGGPDLVLGPASLVGSRGVVTEAVADHRPGRVKIGGESWLAVSVGSEAGIEVGRSVEIVAISGATAHVRPVFDSPSTPELD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7N9</accession>
    <name>A0A0Q8V7N9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HisKA_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13200</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895768.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53306">
        <property type="protein sequence ID" value="KRC53306"/>
        <property type="gene ID" value="ASE19_13200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="144"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="HisKA_3" evidence="2">
        <location>
            <begin position="186"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="44007" checksum="5CC7662E3893018A" modified="2016-01-20" version="1">MLRWLRAGIEANLDRHQILYPWWVPLVSHLGQVLSVVVSLALRDALWPLDPLLVCVPLVMASAAIQFTTSRWLPWYVDILGTVVAACLLLSRPPEGPVDLAPAMLALATAEITARDGVREGLSVAAIAQVVLIGAALGPGLDGAPLYTFVLLLGFVVGSMLLWQMRALIAERRAREQAWDQATVAERERIAREIHDLVAHSLSVSLLQVTGARRALRDVGDAASPQETADAVAEVDAALADAEQVGRRAMADIRRTVSAMATGASERHALPSATDIAALVREMSGAGLRVEYDEQGDPATLPDATGLGLYRIAQESLANVARHGGADAHAQVRFRVNGTGTGTHLRITNPLPAGRVRGDGLGSGLAGMQARAAQLGATLEAGPDGDGWVVDVRLGPVGRFAVDLPCGRTIRKPGLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Q3</accession>
    <name>A0A0Q8V7Q3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_13285</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895784.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53322">
        <property type="protein sequence ID" value="KRC53322"/>
        <property type="gene ID" value="ASE19_13285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="547506at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.600">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010621">
        <property type="entry name" value="DUF1214"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037049">
        <property type="entry name" value="DUF1214_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010679">
        <property type="entry name" value="DUF1254"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037050">
        <property type="entry name" value="DUF1254_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06742">
        <property type="entry name" value="DUF1214"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06863">
        <property type="entry name" value="DUF1254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359785" evidence="1">
        <location>
            <begin position="36"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1254" evidence="3">
        <location>
            <begin position="83"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1214" evidence="2">
        <location>
            <begin position="356"/>
            <end position="464"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF06863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="486" mass="52533" checksum="3192ACA007EE2B47" modified="2016-01-20" version="1">MHQHTPRRLRRLVTATTLALATLGAASTLAGTASADATSDYDRGYALGLEAYKYGLPLLEVDKTQRLQTSVDISNGHGYGPENQFNAFRDFSDPADHWVVSPNLDTLYATAWLDLSDGPIVITIPKVKGDRYWSLQMLDPYTETFGNPGSVQGTEPGAYALVGPGDAATVLPKKVTRIRSAYDRVLIIERIYADNGDPKDIEKVRDLQDKFTMVPLSAYPRKNWQPPVPADPDTTIDQQSLPTGMAYFDRLGELLAEFPPPAADQAEIDRIGAIGVGPGRTPSTDPTLSPETVAGMTAAVADARGRIAADTQALHATSFPTHNGYLTLAAGTYGTNYQLRAMVAQIGLGAQTPDQAIYSLGFADRLGAPLSGNKRYVIHLPAGWAPPVDAFWSVTMYDAAQYLVENEIDRYVINDRSDLQRNADGSIDLYVQSTPPSDPAQAQNWLPAPAGSSFRLGWRLYAPTPDRIAGIVDGTGWNPPAIMPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V896</accession>
    <name>A0A0Q8V896_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13655</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897116.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53387">
        <property type="protein sequence ID" value="KRC53387"/>
        <property type="gene ID" value="ASE19_13655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="730767at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="153"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="271"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="295" mass="31558" checksum="756EA2D116B041B9" modified="2016-01-20" version="1">MATGRTSTRGAALALALVGLGLALAPVAFGMFQRAPLGAEMIQDFAPLMTQERLAGFQGHLAGIDAAVQEIDPLVEARPGIESPAYATFSRDWPEIHTTMTSLMDQVAANREGYDAVASLPDFRLFPWFFAVPGVIILLLAGYGAVTGRDGWWLRLPAAALGVALVVLPFAVGMFDKAPRGAQMMGAFQTIETSENVARIQGYFATMAAGQGAIRLDIAPELARAGVPHPATEELDAQWIRVLNDMTPMIGAMSDSVDNYQAVASLPSFRLFPWFFVAPGALLVLISLTPRKARP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8D5</accession>
    <name>A0A0Q8V8D5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Exonuclease domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13790</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53412">
        <property type="protein sequence ID" value="KRC53412"/>
        <property type="gene ID" value="ASE19_13790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1985371at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036420">
        <property type="entry name" value="BRCT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036625">
        <property type="entry name" value="E3-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013520">
        <property type="entry name" value="Exonuclease_RNaseT/DNA_pol3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029024">
        <property type="entry name" value="TerB-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00929">
        <property type="entry name" value="RNase_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00479">
        <property type="entry name" value="EXOIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158682">
        <property type="entry name" value="SSF158682"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52113">
        <property type="entry name" value="SSF52113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Exonuclease" evidence="1">
        <location>
            <begin position="30"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="539" mass="57487" checksum="CCAE3B3C606B1166" modified="2016-01-20" version="1">MLTMGFMDRFRKQETTPGPAQAAVQLDQPRFAVIDIETTGLTPQLDRILEIAVVTTDPWGRVLGEWSTRINPEGLVGATHIHGITEADVAGAPVFRDVIAALTQQLAGAALVAHNAEFDLAFVREEFRRAGWDMPLAPSLCTLRASEYHLPNLDRRRLADCCWAVGTPLTGAHSALGDARATAVLLAAFMHPHLGAVPLAEHVSLPERAMHVRWPAAPNGAVVRDVAMPRKAEAAYRPSTPPPASTAPEALVAMVDRFSLLDALAMGAPENGMAYLETLAEALEDGEISDDEAAALADVAETMALSAEDVTVANEAFVQALAIEALDDGKVSRAEKAELLRVADILNVNPKLLPTLLGKAEAAREQRMSEGLAPLPDDWSLGEPLRVGDKVVFTGCAAFDRPAMEQRAESLGVLVIGSMSPRVALLVSDGTMDGGKAGRARELGARVVHPNDFRILLDHLQPAQQREIKAPPEPRTAAQPKALASVLVNLPEGVAPVDVREWGRQNGWEVGVRGRLNRDLLAAFVAAREAAAGQSASGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9F3</accession>
    <name>A0A0Q8V9F3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Phosphoribosylformylglycinamidine synthase subunit PurS</fullName>
            <shortName evidence="5">FGAM synthase</shortName>
            <ecNumber evidence="5">6.3.5.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Formylglycinamide ribonucleotide amidotransferase subunit III</fullName>
            <shortName evidence="5">FGAR amidotransferase III</shortName>
            <shortName evidence="5">FGAR-AT III</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Phosphoribosylformylglycinamidine synthase subunit III</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">purS</name>
        <name evidence="6" type="ORF">ASE19_07815</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + H2O + L-glutamine + N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamide = 2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine + ADP + H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17129"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:147286"/>
            <dbReference type="ChEBI" id="CHEBI:147287"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PurS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.3" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895404.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53973">
        <property type="protein sequence ID" value="KRC53973"/>
        <property type="gene ID" value="ASE19_07815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2012814at2"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004642">
        <property type="term" value="F:phosphoribosylformylglycinamidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01926">
        <property type="entry name" value="PurS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003850">
        <property type="entry name" value="PurS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036604">
        <property type="entry name" value="PurS-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34696">
        <property type="entry name" value="PTHR34696"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02700">
        <property type="entry name" value="PurS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82697">
        <property type="entry name" value="SSF82697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00302">
        <property type="entry name" value="TIGR00302"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 5" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 5" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="81" mass="8707" checksum="D90482CD19C1592D" modified="2016-01-20" version="1">MARVVVAVMPKPEILDPQGKAVQGALPRLGFSGVTDVRQGKRFEIEIAGEVTDAVLADVEKMAETLLSNPVIENFTVSVEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9T2</accession>
    <name>A0A0Q8V9T2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative glutamate--cysteine ligase 2</fullName>
            <ecNumber evidence="2">6.3.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Gamma-glutamylcysteine synthetase 2</fullName>
            <shortName evidence="2">GCS 2</shortName>
            <shortName evidence="2">Gamma-GCS 2</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15160</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 2">
            <text>ATP + L-cysteine + L-glutamate = ADP + gamma-L-glutamyl-L-cysteine + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13285"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58173"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.2" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896488.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51421">
        <property type="protein sequence ID" value="KRC51421"/>
        <property type="gene ID" value="ASE19_15160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="991285at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004357">
        <property type="term" value="F:glutamate-cysteine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042398">
        <property type="term" value="P:cellular modified amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01609">
        <property type="entry name" value="Glu_cys_ligase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006336">
        <property type="entry name" value="GCS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011793">
        <property type="entry name" value="YbdK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04107">
        <property type="entry name" value="GCS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02050">
        <property type="entry name" value="gshA_cyan_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 3" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="377" mass="41916" checksum="931A0B9A1C08AD01" modified="2016-01-20" version="1">MRIDFHGSAEPTLGVEWEFALVDRRTRDLRNEAAHLFARAKPRMPDPGKLHKELLKNTVEAVTGICPTVADAMADLRSTLQYVVSAADDLDLDLYGAGTHPFADWTGQQLTEGNRYEELINRTQWWGRQMLIWGVHVHVGLPEQSRVMPVLSALLTYYPHLQALSASSPIWMGVDTGYASNRALMFQQLPTAGLPFQFERWEEFEAFAHDQITTGVIDELSEIRWDLRPAVKHGTLENRICDGVSTLSDMAALVALMHCLVVWLDGRAAAGETLPTMPPWHVQENKWRAARYGVDAIVILDADSNERLVTDDLADLVEQLAPTAARLGCEAELATVLDIPARGPSYVRQRAVAERTGGDLVAVVDSVVTELRNELDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Y8</accession>
    <name>A0A0Q8V9Y8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08805</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895574.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54142">
        <property type="protein sequence ID" value="KRC54142"/>
        <property type="gene ID" value="ASE19_08805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1582456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="280" mass="29687" checksum="4F808E6D0905AB57" modified="2016-01-20" version="1">MSSSTGTRSLDGKRIAITGAGRGIGRATADELHRRGALVAIGDIDVDAAKDAATAIGSDVTAHHVDVTDSDSFAAFLADAKQAMGGLDVLVNNAGVMPIGHFLDIPESTVRRAAEINLLGPTLGMRAALPDMLAQGRGHIVNVASVAGKAAVPGGLYYCSHKAGVIALTEGARLEFGGRGIDFTCVMPSFTNTDLIAGTKGTKFLKNVEPEDVARGIAEAIEHKHKDVYLPRSLRQITFTQTLTGRRLRDFLNRRLGAYDTFLDIDQTGRAAYNDRINKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Z6</accession>
    <name>A0A0Q8V9Z6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09705</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894635.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52697">
        <property type="protein sequence ID" value="KRC52697"/>
        <property type="gene ID" value="ASE19_09705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1999940at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359841" evidence="2">
        <location>
            <begin position="30"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="189"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="191"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="246" mass="25482" checksum="1481FA34461B9605" modified="2016-01-20" version="1">MTGGPTAGRRWAVLALLVGVLVAGLTVSAAVVFGNGDASGDESRLSSVFDPPADLAQDREKVLAAAREFVVRFNSYGPALVKDDCKMPEYAAVGDLMTAKFRTIFANNVVIAESTVTQTGIDRVASVDGIGISAIDTDSATVLASSTVEQSYPDDKVQLEPQSFRYQISLVYHQGAWLVDDLDDVDDGLASFGTSQDSPQLPPRGCQSATPSESPSGSASDAPSDAATTPSSSPSDQATTEGSTAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA13</accession>
    <name>A0A0Q8VA13_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 12">Phosphoribosylformylglycinamidine cyclo-ligase</fullName>
            <ecNumber evidence="3 12">6.3.3.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 12">AIR synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11 12">AIRS</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9 12">Phosphoribosyl-aminoimidazole synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">purM</name>
        <name evidence="15" type="ORF">ASE19_07760</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8 12">
            <text>2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine + ATP = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole + ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:23032"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:137981"/>
            <dbReference type="ChEBI" id="CHEBI:147287"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.3.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 12">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the AIR synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.3.1" evidence="3 12"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895394.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53963">
        <property type="protein sequence ID" value="KRC53963"/>
        <property type="gene ID" value="ASE19_07760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="923547at2"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00129"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004641">
        <property type="term" value="F:phosphoribosylformylglycinamidine cyclo-ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02196">
        <property type="entry name" value="PurM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00741">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004733">
        <property type="entry name" value="PurM_cligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10520">
        <property type="entry name" value="PTHR10520"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="SSF55326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="SSF56042"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00878">
        <property type="entry name" value="purM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 12" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AIRS" evidence="13">
        <location>
            <begin position="59"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS_C" evidence="14">
        <location>
            <begin position="175"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00031908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00032931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00033093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC53963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="353" mass="36980" checksum="12126517C74E79A6" modified="2016-01-20" version="1">MADNAYARAGVDIEAADRAVDLMKEWVEKARRPEMLGGLGGFAGLFDASALLSYKRPLLATSTDGVGTKVAVAQMMDKHDTIGFDLIGMVVDDLVVCGAEPLFVTDYIATGKVVPERIAAIVKGIAEACVEAGCALVGGETAEHPGLLAPDEYDVAGATTGVVEADALLGPGRVRPGDVVIAMAASGLHSNGYSLARHVFFTQAGWTVDRHVEEFGRTLGEELLVPTRLYTKPCLAIARETETHAMAHITGGGLANNLARVMPPELKATLDRGTWTPAPVFDVVRQLGEVAQADLEATLNCGVGMVALVAPEAADAAVARLADFGVDSWVAGEVTVDPEQRGTVELVGQHPGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAA7</accession>
    <name>A0A0Q8VAA7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MBL fold metallo-hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08135</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895463.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54031">
        <property type="protein sequence ID" value="KRC54031"/>
        <property type="gene ID" value="ASE19_08135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="733552at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="46"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="359" mass="38636" checksum="D716120C9B1847EF" modified="2016-01-20" version="1">MSTKGVATGHAISPDSGEHWANEGAWQVADGIHRIPLPLPMDALKAINVYVVQGDDGLTLIDGGWSIPVARELLDKSLRSIGSGFGDIKRFLVTHVHRDHFTMATVLGQEFGAEVALGVEEKPALELLHRAALGEIQGSPFLEVLRTAGAEEIAALWEAGHDGELPDAVDWAFPDLWIEGDRRFEVGSRVIDAVHTPGHTPGHYVYADQLEGVLFAGDHVLPTITPSIGFTVPAVEQPLGQFMASLARVRELPDLRILPAHGPVAPSSYARVDELLAHHEERLDLCLASLRSRGSVTSLVVARDLGWTRHERAFGELDVFSQGMAAMETKAHLDLLVARGQATAVDEADGVVYAPVAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAC1</accession>
    <name>A0A0Q8VAC1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08775</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895568.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54136">
        <property type="protein sequence ID" value="KRC54136"/>
        <property type="gene ID" value="ASE19_08775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="287" mass="29405" checksum="471B997EE3766D58" modified="2016-01-20" version="1">MAGVEGRVVIVTGAGGGLGRDYALFLASVGAKVVVNDLGGSRDGSGAGTAMADTVVEEIRAAGGQAVASYDSVATEEGAAAIVATAIDAFGAVHGLVNNAGILRDTSFAKMDADAWKLVQAVHLDGGYFMSKAVWPHFREQGFGRIVMATSTSGLFGNFGQANYGAAKAGLVGLLNTLAIEGARDGIQVNAIAPMAATRMTADIAPQELLDKLPPAFVSPVVAYLLTEESTETGAVLVAGGGQVYRVAQFQNKGAAFSEPPSLREVSERWSEISELTDVTVGRNPVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAF6</accession>
    <name>A0A0Q8VAF6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MTS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09025</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894516.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52579">
        <property type="protein sequence ID" value="KRC52579"/>
        <property type="gene ID" value="ASE19_09025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1816476at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044260">
        <property type="term" value="P:cellular macromolecule metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043412">
        <property type="term" value="P:macromolecule modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044238">
        <property type="term" value="P:primary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007848">
        <property type="entry name" value="Small_mtfrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05175">
        <property type="entry name" value="MTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MTS" evidence="1">
        <location>
            <begin position="45"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="22124" checksum="718A508B3E8FDB35" modified="2016-01-20" version="1">MTELLPAPATPLTVAFGPLDITYDERVLTPRPWTTLQSYWAHELLDTAPPGPVLELCSGVGHIGLLAIHGTDRRLVCVDVDPVACGYVLENAEAAGLSARVEVHDVALSAYDADHTFGLIIADPPWVLTEHVACFPADPVLAIDGGTDGLAIARECLAVIDRLLAPDGAALLQLGSVAQTGALGDELPEGLRAAEVRAEPGHGLVVKLVRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAI6</accession>
    <name>A0A0Q8VAI6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PEBP family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16845</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0098 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893732.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50263">
        <property type="protein sequence ID" value="KRC50263"/>
        <property type="gene ID" value="ASE19_16845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1150223at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00865">
        <property type="entry name" value="PEBP_bact_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008914">
        <property type="entry name" value="PEBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036610">
        <property type="entry name" value="PEBP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005247">
        <property type="entry name" value="YbhB_YbcL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30289">
        <property type="entry name" value="PTHR30289"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01161">
        <property type="entry name" value="PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49777">
        <property type="entry name" value="SSF49777"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00481">
        <property type="entry name" value="TIGR00481"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="31"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="39"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="175" mass="18494" checksum="1227AB63C8DA761B" modified="2016-01-20" version="1">MSLDRPVTPDPYPLLPAVPSFTVTSADITDGQPLKDDQVAAHGNTSPQLSWEPGPEGTQSYVVTCFDPDAPTPSGFWHWVLVDLPADVTSLDTGAGAEGATLPGNAFMCRNDGGPKAFMGAAPPQGDQVHRYYFVVHAVREATLGVDSDASAAVVSFNLAFKTLGRAIIHGTYQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAU8</accession>
    <name>A0A0Q8VAU8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894688.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52755">
        <property type="protein sequence ID" value="KRC52755"/>
        <property type="gene ID" value="ASE19_10065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2205680at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="164" mass="17927" checksum="2E3420BAEC1D1CC3" modified="2016-01-20" version="1">MSGDRVTWTPTASELEQLTRAGTRLSWRLVGLPVLLIMVVLGSLIGTLRGWAPLGFVLLLVIGLLASGWSWFRGGRAAAREFATSYPVGTEVSAEVDDSRLVLHTATGDVDLPWLRLRRPRPGPDLLAVRDLVGGKWLMIPRQLFPDPWLDRIGPRPGTPSAPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBH9</accession>
    <name>A0A0Q8VBH9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11500</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53011">
        <property type="protein sequence ID" value="KRC53011"/>
        <property type="gene ID" value="ASE19_11500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="689293at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="122"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="365"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="392"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="420"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="460"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="500"/>
            <end position="517"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="697" mass="72664" checksum="90AAFB5EAB04035E" modified="2016-01-20" version="1">MVILTKTLVFAAQFGSWDRSDPVELLLAGLVIGCVGTAAVRCLASVPTGFDVFLCTVALVGGSLMPRDHVPLSGAADSPIIHLVEPMLMVIAVRRHRAVVPMLLLAGLFVGLRWATGDTEGLRYGAQEVVLICGTAFAALYLVTQMRRASARAEEVIATNREVHRAHLSVAELDTAAFLHDDLVPTLLAVGSMPGSPDTRSAAASALARLTGPSHGEDVSDVVAALRAAAGREMLDVEVVVKGPRTHLPEAVREAMVGAATEALRNVARHSGQRHATLTVVRRPTGLRIRIEDPGTGFSGKPGVGMRVAIIGRVESIGGTARVDGIASGTVVELVWRARIVSRLLGLAPEHDRLIRAAVIDPGRVARHACAVLAAGYLATAALLTLDIPPQPWLYAGAALIVAMVLVLTVAMSRGPVHPVVLLVVAVVPPGVLALTLPSVSAEGMGGAESWIIEFSTLPALALAWVVSVRMVLLLLLPNAVVITLVALDVGAPAADLPHILFVQPLNAMFVAVIVSVCRRAGRVLTEPAAPEVTARAAAVLSALGPTLRPVVVALRAVGAPDAPTEPSPTRLAQAVRDCLYLPGPGHEALRTELDMLRRAGVRVHTILAESPPATRTLAAALGAVRGTGIQEVTISGTSEEVTIVAVPGPAPEVAERLPRLLPVAWQVTAEPEASVLSGPPDLATLIRRGGRQPVRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBV2</accession>
    <name>A0A0Q8VBV2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12225</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895066.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53139">
        <property type="protein sequence ID" value="KRC53139"/>
        <property type="gene ID" value="ASE19_12225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1893112at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027981">
        <property type="entry name" value="DUF4446"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14584">
        <property type="entry name" value="DUF4446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="132" mass="13795" checksum="7C2D70327E4A2153" modified="2016-01-20" version="1">MAVVLSILALLLAAAALVVALRSAGRRTTAGEEGLPADAAGLRREVAALRAEAVGALRHLAVVRYDAFDEMGGRLSWSLALLDDSGDGVVLTSIRGRNEARTYAKSVAAWSSDQELSPEEGEAVAHARLARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBX9</accession>
    <name>A0A0Q8VBX9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12390</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895098.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53171">
        <property type="protein sequence ID" value="KRC53171"/>
        <property type="gene ID" value="ASE19_12390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1375084at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024787">
        <property type="entry name" value="EcsC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12787">
        <property type="entry name" value="EcsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="24464" checksum="B3FD4D12B31F8A6A" modified="2016-01-20" version="1">MAPSLRKGLAVEAARQLAPKVTQMAPGLTQSFVREALHRAITGVGPLPPAAQAAEAQLREQHGNVDKAVREVIQNHVAYAGVEGFATNLGGLVTAAVVAPANIAGLALIQSRMVAGIAHLRGYDLEDPRVRNAILESILGEDAVVKMVKKKQLPAPPMAVATAPQHDPALDQTISTALANELIGRVIGKRLAITVGKRVPVVGGAVGLVADAWSTWRVGRYADKEFLPRTLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC47</accession>
    <name>A0A0Q8VC47_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Endo/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_05065</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894244.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54837">
        <property type="protein sequence ID" value="KRC54837"/>
        <property type="gene ID" value="ASE19_05065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2023649at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="3">
        <location>
            <begin position="130"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="365" mass="39305" checksum="CB1B3BF3BB4BBC09" modified="2016-01-20" version="1">MGDHQRRGRVRHAVTASEVVVAVLAVVAGLAVIAVVTWTNHPLTAVGADVAGATASETDRGSLAQGTVADDGRYDTPEPGEIGEGESATGKRPMQSSSRLEERKVNALVDDVEAIVRRSKVRATTFRVASLNILGSNHVRNGLNRAAREAALLRDRGVQIVGMQEVQRDQRSVLINNLPAMQMWPQDALGRDGYRVQIMWRTDRFTMVDNGGSSHTFNGIRSVPIPYVLLRDRTTGAQFWVIVTHNSPNGRQSERNASAEIQIDLVNRLRATGHPVLLMGDLNEKTTVFCKFATRAGMISANGGSGSPSGCRPPGGPQRIDWILGTGGDEVDFSGYVQDGTTRAQGMSDHYLVYADAAVVDKAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC86</accession>
    <name>A0A0Q8VC86_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04685</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54776">
        <property type="protein sequence ID" value="KRC54776"/>
        <property type="gene ID" value="ASE19_04685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1756574at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359893" evidence="1">
        <location>
            <begin position="22"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="201" mass="20711" checksum="C55C4520ABE40D52" modified="2016-01-20" version="1">MWLGVLLVAGSVVLGARLLAAADDTVAVWAVVDDRGSGTPVVAADLAVERVRFGDGDVLDRYFPADQPVPDGLVLTRAVGAGELLARSAVGDAERTDVLQVPLAVDPQRVPPDVAAGSVVDVWISDGTADRDRARDDDATAGTDGPALSGVTVVAAPGYDDTFAVSGTRQVVVAVDDERAAAFEQLLSGLGDPVIRILQRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCE8</accession>
    <name>A0A0Q8VCE8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Acetolactate synthase</fullName>
            <ecNumber evidence="4 8">2.2.1.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_05590</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>H(+) + 2 pyruvate = (2S)-2-acetolactate + CO2</text>
            <dbReference type="Rhea" id="RHEA:25249"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58476"/>
            <dbReference type="EC" id="2.2.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
        <text evidence="8">Binds 1 thiamine pyrophosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 8">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 1/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 1/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the TPP enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.6" evidence="4 8"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54926">
        <property type="protein sequence ID" value="KRC54926"/>
        <property type="gene ID" value="ASE19_05590"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00055"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003984">
        <property type="term" value="F:acetolactate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd02015">
        <property type="entry name" value="TPP_AHAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012846">
        <property type="entry name" value="Acetolactate_synth_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039368">
        <property type="entry name" value="AHAS_TPP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012000">
        <property type="entry name" value="Thiamin_PyroP_enz_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012001">
        <property type="entry name" value="Thiamin_PyroP_enz_TPP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000399">
        <property type="entry name" value="TPP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045229">
        <property type="entry name" value="TPP_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968">
        <property type="entry name" value="PTHR18968"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00205">
        <property type="entry name" value="TPP_enzyme_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02776">
        <property type="entry name" value="TPP_enzyme_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00118">
        <property type="entry name" value="acolac_lg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00187">
        <property type="entry name" value="TPP_ENZYMES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="6 8 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TPP_enzyme_N" evidence="11">
        <location>
            <begin position="12"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_M" evidence="9">
        <location>
            <begin position="200"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_C" evidence="10">
        <location>
            <begin position="399"/>
            <end position="549"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC54926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="586" mass="62364" checksum="B3567869A030A984" modified="2016-01-20" version="1">MTEQQGSGETITGAQSLVRSLEAAGVTDIFGIPGGAILPAYDPLMDSSIRHILVRHEQGAGHAAQGYASASGRVGVCMATSGPGATNLVTPLADAHMDSVPMVAITGQVGASLIGTDAFQEADIRGITMPITKHNFLVTDPAEIPTKIAEAFHIASTGRPGPVLVDVTKSALQSNTSFHWPSEISLPGYRPVTRPHAKQIREAARLILESRRPVLYVGGGTIRSGASKELAALAELTGIPVVTTLMARGAFPDSHPQHLGMPGMHGTVAAVAALQKSDLLISLGARFDDRVTGNLDSFAPDAKVIHADIDPAEIGKNRYADVPIVGDVREVLVDLITTLRTEEQAGNTGDYEAWVAFCAGVKKKYPLGYDKPADGGLAPQYVIERLGAISGPNTIYTAGVGQHQMWAAHFVGYERPNTWINSGGLGTMGFAVPGAMGAKVAMPDQTVWAVDGDGCFQMTNQELATCAINDIPIKVAIINNESLGMVRQWQTLFYNSRYSNTDLHSKRIPDFVKLADAYGCVGLACESPDDVDATIQKAMEINDVPVVVDFRVHRDAMVWPMVAAGTSNDDIKYARDLAPQFDEDDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCF7</accession>
    <name>A0A0Q8VCF7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Toxic anion resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05480</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TelA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894175.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54906">
        <property type="protein sequence ID" value="KRC54906"/>
        <property type="gene ID" value="ASE19_05480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="498244at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008863">
        <property type="entry name" value="Toxic_anion-R_TelA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38432">
        <property type="entry name" value="PTHR38432"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05816">
        <property type="entry name" value="TelA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF026508">
        <property type="entry name" value="TelA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR026508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="413" mass="44852" checksum="BAE7D07B2476D826" modified="2016-01-20" version="1">MTTDGSQATPAASAPEPSPLAPPEPVIQLTAPEAPAVVVETQAPKMAPQVDAAMVPELDAKVDNFLTSLTAAKAGSPEFSAQAENVRTMGDADIRKAAETSNRMLDKPVNALKQGGIAEGSDVGKTLLALRRTVEDLDPGQATGVKKWWDKLPFNDKVEDYFRKYQSSQSQLNGILHSLRSGQDELTRDNVALNLEKTNLWSVMGRLNQYIYVAEKLDAKLSAKIAELELSDPETAKTLSQDVLFYVRQKHQDLLTQLAVSIQAYLAIDIIIKNNIELIKGVDRATTTTISALRTAVIVAQALNNQKLVLDQITALNSTTSTMIQRTSEMLKENSAAIQEQAASSTIGIEQLQAAFANIYATMDSIDEFKLKALDNMSTTIGVLENEVQKSKAYLDRVQQHDARNAAGTLDIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCL3</accession>
    <name>A0A0Q8VCL3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05465</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894177.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54904">
        <property type="protein sequence ID" value="KRC54904"/>
        <property type="gene ID" value="ASE19_05465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1675228at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="45"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="203"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="233"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="392"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="423" mass="45043" checksum="7CEFEA60D2E97443" modified="2016-01-20" version="1">MSQTASPQAAPPPPAAAPAPAAPATATRAGTGHVDTPGLLNRWQLIGMSVAIVFGLLSAFVQFLGWQSDGRAAEDTKQLQRVQEIQSSLLRADALATNAFLVGGLEKQRATYDEEINTVLREITNAADAQPADREVLGELNVAVGDYTRAVADARSNNRQGFPVGAEYLSGASTQLRADATPILSALVKANTERAEGSMDGQHPFWLLLIGLLALAGLLWLNQQLAQHFRRRLNKGIAVAAAIVLVVTVIGVVGAWIRDSSNDTLRDGDLALAISQAKARTAANDAKANESLALIKRGSGAVYLEEWEGSATNVERSLRRDTGESWNDYVAVYREIRKLDDGGNWEKARDLATTSAASGSSKPLDDFDKASDQIVKAASGHVGHDLRSGRDVALAISIFSLLLGIGAALFVSRGIGERRREFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCN4</accession>
    <name>A0A0Q8VCN4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05955</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894088.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54986">
        <property type="protein sequence ID" value="KRC54986"/>
        <property type="gene ID" value="ASE19_05955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1582456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="270" mass="28020" checksum="FE4DC7E268B6ABC6" modified="2016-01-20" version="1">MTGPRTAIVTGGGSGIGAALVRALVRDGAYVVCADLDLAAASSVAAGASGPGRAVARAVDVTSASDVQTAVDAVVAEHGRLDLMFNNAGITFLGDTEDLTLAQWNAIIDVNVRGVVHGVHAAYPQMIRQRSGHIVNTASMGGLMAAGLMTSYVTTKHAVVGLSLALRTEAAAHGVGVTVVCPAAVDTPILDKGEIGRFKGRDFYLEGQGVKHPVDPDVLARRVLAAVADDEAYVVEPRQARIAWRLGRLSPTFVNKMATKFIAKQRAQAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCU9</accession>
    <name>A0A0Q8VCU9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MarR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05215</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894218.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54863">
        <property type="protein sequence ID" value="KRC54863"/>
        <property type="gene ID" value="ASE19_05215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1681849at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="18027" checksum="537DD6916E6176F7" modified="2016-01-20" version="1">MSTAEPRWLDQEQQRAWRSFLLGTTLLLDRIDEDLRRDHGLSAVEYEILVRLSEAEGRMRMAQLAASLAHSRSRVTHTVKRMENAGLVERTGSPEDGRGVVCRLTDKGSATLRTAAPSHVETVRQSLIDLVDPCDLQALDRVMNAVCDQLIADHPERELR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCV5</accession>
    <name>A0A0Q8VCV5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05575</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54923">
        <property type="protein sequence ID" value="KRC54923"/>
        <property type="gene ID" value="ASE19_05575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1985763at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="109" mass="11921" checksum="6EA3D8449F76ECCC" modified="2016-01-20" version="1">MRPSWQAAPCPPWCAREHTEDDHPEDRYHQSEPSIVAAVAGAGDVVPLPSSLRPVSLAVRAGRYADDELTWLVVEPLEARAPRMVLTREAAAALLRGLQEQLTGLEADD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD55</accession>
    <name>A0A0Q8VD55_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Mini-circle protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06020</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894076.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54998">
        <property type="protein sequence ID" value="KRC54998"/>
        <property type="gene ID" value="ASE19_06020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047691at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007061">
        <property type="entry name" value="DUF664"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04978">
        <property type="entry name" value="DUF664"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="17982" checksum="10C6BF8F30F1ECF0" modified="2016-01-20" version="1">MSELTDLRSFVDAQRATLLRQVAGLDAAQLAQPLPPSTMTLGGMLKHLAYVEDFWLGVVLLDQPPTPPFEAVDWRTDRDWDWRTAADDSPEELLRMHADAVARSDAVLAAVTDPEARAARGHRRTGEAPTVRWILLHLVEEYARHLGHADLIRESIDGATGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDC3</accession>
    <name>A0A0Q8VDC3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Single-stranded DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_14005</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53683">
        <property type="protein sequence ID" value="KRC53683"/>
        <property type="gene ID" value="ASE19_14005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02414">
        <property type="entry name" value="jag_KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02644">
        <property type="entry name" value="R3H_jag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038008">
        <property type="entry name" value="Jag_KH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039247">
        <property type="entry name" value="KhpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001374">
        <property type="entry name" value="R3H_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036867">
        <property type="entry name" value="R3H_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034079">
        <property type="entry name" value="R3H_KhpB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35800">
        <property type="entry name" value="PTHR35800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01424">
        <property type="entry name" value="R3H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00393">
        <property type="entry name" value="R3H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82708">
        <property type="entry name" value="SSF82708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51061">
        <property type="entry name" value="R3H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0133">Cell shape</keyword>
    <keyword evidence="2" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="R3H" evidence="4">
        <location>
            <begin position="114"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="180" mass="19316" checksum="B67D316CB5B214D6" modified="2016-01-20" version="1">MESEETADDADETEETDDTEAPAEGDRVSRLEQEGDIAADYLEELLDIADLDGDLDIDVEADRAAVSIVGADLSQLVGQDGKVLEALQELTRLAVYRETGERSRLMLDVSGFRADKRTRLSQLGADTAAQVAASGEPVSLEPMSPFERKIVHDAVAAAGLRSESAGVEPRRYVVVLPADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDF9</accession>
    <name>A0A0Q8VDF9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09940</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894668.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52733">
        <property type="protein sequence ID" value="KRC52733"/>
        <property type="gene ID" value="ASE19_09940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1705422at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="110"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="16427" checksum="012E87A118269C09" modified="2016-01-20" version="1">MSYLRATRVLCWLLGIALVVSVVHYVDNYVNYDDYPLPADDATIPAPSAGLVAFAWFLFTAFGGIGLLLWFRRHITTAAIFLTGYSLSGLIGILHYTVPGASDMVWWRQTHVVADIVCGAAVLGFALWAARNSSELIPPGWKPSTPQRDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDZ1</accession>
    <name>A0A0Q8VDZ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07915</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53993">
        <property type="protein sequence ID" value="KRC53993"/>
        <property type="gene ID" value="ASE19_07915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1934919at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="42"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="79"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="271" mass="28226" checksum="692DDA2852CA6C2D" modified="2016-01-20" version="1">MTSVDFGAGRRGTPDRGHALTTVVSMSSARPLPPGVYWRRRVFVLGVAFALVFVIARWLTGSSDASDDDAPVAEQAGAQVPTATRTVTAGEQATDATATGTASKGATAKPTLAQPDGPCEAPDIVVTPSVAKGAEAGGDVTLTLSLQTLESEACTWEVSRSTVTTKISDGSREVWTTQQCPRAVPTQSVVVRRSVATLVELTWNAKESAANCSRRTDWVMPGDYTIEAAALGGEPGSAEFSLVAPATRTVVVTPKATPKATSTKKPRKPVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFN3</accession>
    <name>A0A0Q8VFN3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13300</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895787.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53325">
        <property type="protein sequence ID" value="KRC53325"/>
        <property type="gene ID" value="ASE19_13300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1582456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="265" mass="28171" checksum="9DC78BD36DC760E6" modified="2016-01-20" version="1">MTSLAGKVAVVTGAGSGIGRALAVELANRGARVAISDIDASGLEQTRALCGGADVRSYKLDVSRAEEFTAHAAEVLEDFGTVHLVFNNAGATLIGTLEHTEVEEIDWLLGINLRGVICGTKAFLPTMLAQREGWIVNISSIFGLVGYGGQSAYNVTKFGVRGLTEALWSELEGTGVEAVLVHPGAIATNIERAARHTVNAGKVEADLAARTGTMLVTPPEVVAGNILDGIENGRRRILTGKYSRSIFWLTRLMPNRYPAVLKRMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFT3</accession>
    <name>A0A0Q8VFT3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13235</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895775.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53313">
        <property type="protein sequence ID" value="KRC53313"/>
        <property type="gene ID" value="ASE19_13235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1975270at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="134" mass="13753" checksum="CCA9C31AE894F657" modified="2016-01-20" version="1">MTTITAPRTAPALARRTRLWFGADAVVTATNALAYLVLAGPLADLLGGEAGAYRELGLFMVGYAVVVGLYARSRMPSGAGWAIVAGNAVGVLASLEIAVTGAFGLENAGRVWAVAQALVVADLALLQARSLRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFV2</accession>
    <name>A0A0Q8VFV2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Endonuclease IV</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_13850</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AP endonuclease 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897079.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53424">
        <property type="protein sequence ID" value="KRC53424"/>
        <property type="gene ID" value="ASE19_13850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1088517at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001719">
        <property type="entry name" value="AP_endonuc_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018246">
        <property type="entry name" value="AP_endonuc_F2_Zn_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21445">
        <property type="entry name" value="PTHR21445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00518">
        <property type="entry name" value="AP2Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00729">
        <property type="entry name" value="AP_NUCLEASE_F2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00730">
        <property type="entry name" value="AP_NUCLEASE_F2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51432">
        <property type="entry name" value="AP_NUCLEASE_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="9" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="8">
        <location>
            <begin position="27"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="265" mass="28226" checksum="9BB4EE1A8C5AEC1F" modified="2016-01-20" version="1">MSELRIGAHVDQTDPIGEALARNAPLVQFFLGNPQSYKGPVLSYDGGPAALRAAAESAGVDLYVHAPYLINVATTNNRQRIPSRKLLQQHMDAAAELGAKGLIVHGGHVTDEDDPAKGFDNWRKAVEATDIKVPLLIENTAGGTNAMTRYLDRIKGTWDAISSAEGSDMVGFCLDTCHAHAGGNALETIVDDVLAITGRIDLVHANDSRDAFDSGADRHANFGAGQIDPDLLAQVVRDAKAPVVCETPGGATEHVADFAWLRERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG73</accession>
    <name>A0A0Q8VG73_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Alpha-L-AF_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_11300</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 51 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894909.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52978">
        <property type="protein sequence ID" value="KRC52978"/>
        <property type="gene ID" value="ASE19_11300"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046556">
        <property type="term" value="F:alpha-L-arabinofuranosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046373">
        <property type="term" value="P:L-arabinose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010720">
        <property type="entry name" value="Alpha-L-AF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032109">
        <property type="entry name" value="Big_3_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009784">
        <property type="entry name" value="DUF1349"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06964">
        <property type="entry name" value="Alpha-L-AF_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16640">
        <property type="entry name" value="Big_3_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07081">
        <property type="entry name" value="DUF1349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00813">
        <property type="entry name" value="Alpha-L-AF_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alpha-L-AF_C" evidence="3">
        <location>
            <begin position="773"/>
            <end position="1128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1498" mass="156822" checksum="F6E67C434688AE64" modified="2016-01-20" version="1">MTWSDAFDGSALGGRWDVVNPEPAALSVSAGALHLSGQPGDTWQSNNTAKNVVMLDVPAGDFTATAKLSAPVTKVYQGAGLIAWQDMDNYVRAGLTYVGSLSPSGIAVETDRESGATFGAVAFADRPASTGETLRLQRTGDTITTSYLDGASWVVAATTTVSFDTTQVGLYALAAQDGTTTEAAFDSFEITHARGADVAPAGSFTLQADHASPYLVRDGDALALSADQPTSSMRLQATDLGGGALGLVTGAGAVVVVGGELTVGDGAADPTPLRITDAGGGKVVVRIDGAADGADHVAVDGDGHLVAGSEADAVRFVLTEVEDTTATLDIDADGSGAELNPDMFGIFFEDINYAADGGIYAELVRNRSFEFNSTDNGSYNAMTAWSLANRSGGASSAAVVDDGGRLNAMNRNYLRLVAAAAGDGVVNAGFDGVAVRSGDLYDASVWVRTTTAQSLTVRLESADGATALGSGSVQVAGNDTWQQVQVPITASATSNNARIAVLAGAASTLAVDMVSVMPRDTWVGPVNGRTVLRKDLAERVAAMDPGFVRFPGGCVTNVGTFKSYEESGYVDRQRTYQWKETIGPVEERPTNKNFWGYNQTYGIGYLEYFELAEDLGAEPLPVLSVGANGCGSTIPEMRDQASIDRWVQDTVDLIEFANGSVDTEWGAVRAGLGHPAPFDLEMIGLGNEENTTTFEANFPKFKAAVEAAYPDITIISNSGPDDTGTRFDTLWSFNRAQKVDLVDEHYYNAPSWFTDNTHRYDDYDREGPGVFLGEYASQGNTFNNALVEAAYMTGLQRNGDVVRLASYAPLLANENHVQWSPDAIWFDNDESWESADWQVQKMFGNNVGDRVVPSTFDGSVNDPQDVKGGVFLSTWNTSAAYDNVSVTNDATGETLFSDNFSDASKWSSQAGSWAVSGGRYVQSSTSTTDARSIITGAYDKGWSNYTLELDATKLSGAEGFLVGFGATGANNFYWWNIGGWGNSRSVLQRADGGSASEVVALEGDSVTTGTTYHLKIEVDGTTIRLYQDGVLKLTYDQVDTSEQLFQVVTKDDATGDLVAKVVNTATSPVRTQVHVADAGIEPTGTVTTLSAPSLGSTNTKANPQLIWPKARQVSGLSSDFEYEFPASSVTFLRMHTTDAVPPVVDDLSVSGGGVRGWYRDPASVHVAASDNRGVDHLEWSLDGGAWHEVDGDEADVEVAGDGSHELAVRAVDTSGNVGEVRPLTVGVDAAAPVTKASFSTAARSVTLTAVDSGAGVAEGGTEYRLDGAAWSSYDQPVVADGAAHVLEFRSTDVFGNAEDAGRLDIPAVGALEASTTAATVASSTVRLGATVSVRVSVSGAGTTPTGPVVLRRGSTLLASATLASGRATLKVATSKLGRGSHMLTVEYAGDAAHTGSSDTVAITVVKASSTTGLSVTKAATRMPLVTVRVQAAVPVAGTVAVLVQRGGRTVLTRTVRLSGGRGQVRLPRLPKGSHVVVARYAGSTTVDPSTTRTTVRIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG87</accession>
    <name>A0A0Q8VG87_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11400</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894924.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52994">
        <property type="protein sequence ID" value="KRC52994"/>
        <property type="gene ID" value="ASE19_11400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2052815at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="20"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="75" mass="8283" checksum="3A6CE7E6F6A7CF71" modified="2016-01-20" version="1">MSCRRATCSDAHWVPESVDVEILRLTAAGLTIEVVGRRLDLSERTVRRRLRALADEVGVDTSIEVVVHAVRTGVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGH9</accession>
    <name>A0A0Q8VGH9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14580</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896950.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53553">
        <property type="protein sequence ID" value="KRC53553"/>
        <property type="gene ID" value="ASE19_14580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1717097at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007061">
        <property type="entry name" value="DUF664"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04978">
        <property type="entry name" value="DUF664"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="172" mass="18580" checksum="61BD546093A8CEC8" modified="2016-01-20" version="1">MSPADLLTEAIDRVLESVESVLDGADDALLAERPTPDANSIGWLVWHLTRVQDDHVADVAGTEQVWTDGGYAERFDLPIETGDIGYGHTSAQVALVRAPAGLLADYYRATHARTVEYLASISADDLDRVVDERWDPPVTLGVRLVSVVNDCTQHVGQAAYLRGMLSPAPGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGV3</accession>
    <name>A0A0Q8VGV3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_04405</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894352.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54729">
        <property type="protein sequence ID" value="KRC54729"/>
        <property type="gene ID" value="ASE19_04405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041490">
        <property type="entry name" value="KstR2_TetR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17932">
        <property type="entry name" value="TetR_C_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="5">
        <location>
            <begin position="11"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="200" mass="21993" checksum="381B1FF2FA3AC73B" modified="2016-01-20" version="1">MTASAEPSRTEVTKQRILESATKAFAERGFHGTSTRDITTAAGTSSAALYVHHKSKEELLFLISKAGHETTLALMLEGRGSSGDPAEQLHTVVRDFIADHARNHTRARIVNYEMAALDPEHLEEITALRHRIDVELIDLIAAGIKAGTFDIPDPRIAASAILSLGIDLARWFSDDFRLSPEELGEEYAELALRIVRARGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHA5</accession>
    <name>A0A0Q8VHA5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892892.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56874">
        <property type="protein sequence ID" value="KRC56874"/>
        <property type="gene ID" value="ASE19_03460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2039266at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="141" mass="14774" checksum="26EFF8D706B32F97" modified="2016-01-20" version="1">MTQGPVGTSSPNPPPLTAAASLVAVQGIVLLFLAVMETANLADERRSLGLSTTFFFAAYGVVLLAAAWGLRRRSSWARGPALITQLIMLGLAWNIREHVAVAIVLVICAGIVLAGMLHPDTLHALDRDPTAGDDQASDSSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHC9</accession>
    <name>A0A0Q8VHC9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03600</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892918.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56901">
        <property type="protein sequence ID" value="KRC56901"/>
        <property type="gene ID" value="ASE19_03600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="895310at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011703">
        <property type="entry name" value="ATPase_AAA-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07726">
        <property type="entry name" value="AAA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_3" evidence="1">
        <location>
            <begin position="45"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_lid_2" evidence="2">
        <location>
            <begin position="238"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="35439" checksum="744294F9886E8E0C" modified="2016-01-20" version="1">MSLSTEQTEWFSQTFAQLVANVEQAIVGKTEVVRLAFVTLLAEGHLLLEDYPGTGKTSLARAIAQTIQGDHHRIQFTPDLLPSDVTGVTIFDQRSQEFEFHKGPIFSNVVLADEINRASPKTQSALLEVMEESQVTVDGVTHMVGQPFIVIATQNPIEQAGTYRLPEAQLDRFLIKATLGYPDHENTVQILTNAPKGKAATVLNPIISGDNVLHLISLAQQVHVEPAIYEYVASITEETRNASEVVLGTSVRAGLALVRAARAWAASYGRNYVVPDDVKTLAVPVLAHRMVLDPEEDFRGTTTEDVVRRVLERISVPLEPAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHY5</accession>
    <name>A0A0Q8VHY5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02815</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892785.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56767">
        <property type="protein sequence ID" value="KRC56767"/>
        <property type="gene ID" value="ASE19_02815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1604782at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002139">
        <property type="entry name" value="Ribo/fructo_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00990">
        <property type="entry name" value="RIBOKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="1">
        <location>
            <begin position="37"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="333" mass="35910" checksum="E6B2FF665AD188DF" modified="2016-01-20" version="1">MFRVVTAPTGSLLIAGSIATDHLMTFGGKFADSLVVEQLDKLSVSFLVNDLEIRRGGVAPNMCFGLARLGLRPVLVGAAGDDFADYRSWLERNGVDCDSVHISESKHTARFVCTTDSTMAQFASFYPGAMSEASQIELLPIVERVGAPTYVLIGADDPEAMKRHTEECRQRGYPFIADCSQQLAFAEGDLIRDLIEGAAILFSNEYESHVIEKKTGWSAEEVLSRVGIQVTTLGKDGVRVTSQDGTSFEVPAAKDVAAVEPTGVGDAFRGGFLAALSWGTSLERAAQVGCVLAAYVVETVGTQEYTFTLEQFVERVRVSYGDEAADEVAKHLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI07</accession>
    <name>A0A0Q8VI07_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_14400</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896981.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53522">
        <property type="protein sequence ID" value="KRC53522"/>
        <property type="gene ID" value="ASE19_14400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2107878at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360057" evidence="3">
        <location>
            <begin position="44"/>
            <end position="596"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="572"/>
            <end position="590"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="536"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="62"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="545"/>
            <end position="559"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="596" mass="60613" checksum="A51A17875BFDB371" modified="2016-01-20" version="1">MNLSPRPSRRSEFRRASARRAGLGRRIALTVPVAALVAVSAFVAPGYADDAGSGGEAPAAEQADPPAPPPAPEPAPAPKPAPEPKPAPEPKPAPEPDPAPAPEPPAEEAPAAEAPAEEAPAEEAPDEQAAPQAIPADAVPAGDGAEDGAEQIRSDAPQAVEEDEKKVVVCKYVGTPPGVPDHVIVVSESAALAAGWVLGQFPGPFADAHDSIAIRWAVGNEQPGDEELGSCPLAQVTPPSVDPVDPCGPDNIAFPAVAETDQYTVAVVDGDVVLTAKPGFEFPGGQETFTLVLPDDSGVACEETEGDEKKVVVCKYVGTPPGVPDHIIVVSESAALAAGWVLGQFPGVFADAQDSVAIRWAVGNEQPGDEELVNCPLATVQPPPLEPTDECGPDNAAYPPLAETDQFTVAVNEDGSVTLTAKPGFAFPGNLHTFTYPAPVDSDEPCPEPAALVACVYPPAGTVPLGPGVPAGEIAIVDELTATANGFLGTFPFTYVDGDHEVSLLAILEEGQTADDFDALDMCGGVAGICEDAATNPDAVDADGEPCTPPDDDGDTGGETDELPNTGGPAGFLLPVGALMVLVGAGLVVVRRPHSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIK6</accession>
    <name>A0A0Q8VIK6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Coenzyme F420 biosynthesis-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08080</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895637.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54205">
        <property type="protein sequence ID" value="KRC54205"/>
        <property type="gene ID" value="ASE19_08080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1070352at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.150.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022454">
        <property type="entry name" value="CHP03883_F420-assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018766">
        <property type="entry name" value="Zinicin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042271">
        <property type="entry name" value="Zinicin_2_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39420">
        <property type="entry name" value="PTHR39420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10103">
        <property type="entry name" value="Zincin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03883">
        <property type="entry name" value="DUF2342_F420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03624">
        <property type="entry name" value="TIGR03624"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="339" mass="36684" checksum="06BB3110D63B1095" modified="2016-01-20" version="1">MIDWGLAVSLGSRLAGDGPTVTRAEAGDAVAELRAGAHRSTGLVREFTGLDAPDGTAPILVVDRAGWVQANAEGFAVATRPMVEKMVANKPPSGLAIKVGSKVTGAEVGGLLGFLAGKVLGQFDPFHPPYGRLLLVAPNIVHVERELEVDPHDFRLWVCLHEETHRVQFTAVPWMRDHLFSEIQALSDAVDPAGLLEGGVERISEAMKAARNGGSIVDMFSTPEQRVVLDRVTGMMSLLEGHADVVMDDVGPTVIPSVERIRRKFTQRRQGVGALDRILRRLLGLEAKMAQYRDGAQFVRAVVDKVGMEEFNAVWAAPENLPGKAELADPEGWVRRVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIY3</accession>
    <name>A0A0Q8VIY3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_12050</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the auxin efflux carrier (TC 2.A.69) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895038.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53111">
        <property type="protein sequence ID" value="KRC53111"/>
        <property type="gene ID" value="ASE19_12050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2033473at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004776">
        <property type="entry name" value="Mem_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03547">
        <property type="entry name" value="Mem_trans"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="65"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="188"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="224"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="252"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="285"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="305" mass="31033" checksum="C56A5CFDB203544B" modified="2016-01-20" version="1">MAGVFDGFAVIGVVIGFGALLAHLGVVDSAGQRTLSAVAFFLASPALLFTVLQESDIAEVFSGNLVAISAGVLCTLSATVVVGIVRRDGSARTVVAAMCSSYCNAGNLGLPIAAYVLGNTALIAPILLLQLLVLQPPALMVLDAARNSGRPSLRSVASRPLRNPITVASLAGVGVTLAELRVPEVVNAPIALIGGMAVPSMLLAYGVSLRLGPLPGRGVPAADLGLAVGLKLLVQPAVAYVVGRLIGLDNESLLAVTVISALPTAQNVFVIASRYQRAELLARDAIFVSTFGCVPVVIVIVALLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJN1</accession>
    <name>A0A0Q8VJN1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23370</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893976.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57770">
        <property type="protein sequence ID" value="KRC57770"/>
        <property type="gene ID" value="ASE19_23370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="954654at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021447">
        <property type="entry name" value="DUF3097"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11296">
        <property type="entry name" value="DUF3097"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="287" mass="31829" checksum="82C519D6629A6DE4" modified="2016-01-20" version="1">MTRLRWSVVDRYGTDVLAGDWKVPKRGRAVETPADPGIVVEEVTTDWCGEVVAVDRDLDTVTLEDRRGKRRTFPLGPGFLLDGKPVVLTAPITQAGPVRPTRTASGSIAVHDAKARVARASRIFVEGRHDAELVEKVWGDDLRIEGVVVEYLGGVDDLADHLRHFKPGPNRRVGVLVDHLVAGSKESRIAQGIAKSPVGKDVLIVGHPFIDIWQAVKPERLGFQAWPKVPRDIDWKKGTCQQLGWPHRDQADIARAWKHILGGVRGFQDLDPQLLGRVEELIDFVTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJR2</accession>
    <name>A0A0Q8VJR2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23645</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893958.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57752">
        <property type="protein sequence ID" value="KRC57752"/>
        <property type="gene ID" value="ASE19_23645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1269500at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="286" mass="32147" checksum="33DDDE2029562D17" modified="2016-01-20" version="1">MGGVFGEALRAALDARSMSLGSLHRSLQARGTRVSLATLSYWRSGQREPEQEGSLRALAEIEQILHLDPGALEVLLEKRRRRVAPNLLADLSEDHERIRTMLADLDFHSPSDRLIDREVTLKYELGPDRAPVRSTYVVVVESIHAHADRRATVLSVRPGAEAPDITPLGGYRLGEVLHDRERGIVVGEMLLDRPLVAGETALLEQDVVYRTPDPDDNCYFYWAVRRMTSVSLWIRFHPDHVPARCEYYTVIDGVEQVTELETFGASVSRTATSFGPGTLGIRWHWD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK83</accession>
    <name>A0A0Q8VK83_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Nitrile hydratase subunit beta</fullName>
            <shortName evidence="5">NHase</shortName>
            <ecNumber evidence="5">4.2.1.84</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_04340</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 5">NHase catalyzes the hydration of various nitrile compounds to the corresponding amides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>an aliphatic amide = a nitrile + H2O</text>
            <dbReference type="Rhea" id="RHEA:12673"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18379"/>
            <dbReference type="ChEBI" id="CHEBI:65285"/>
            <dbReference type="EC" id="4.2.1.84"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the nitrile hydratase subunit beta family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.84" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894364.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54717">
        <property type="protein sequence ID" value="KRC54717"/>
        <property type="gene ID" value="ASE19_04340"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1379595at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080109">
        <property type="term" value="F:indole-3-acetonitrile nitrile hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042262">
        <property type="entry name" value="CN_hydtase_beta_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024690">
        <property type="entry name" value="CN_hydtase_beta_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008990">
        <property type="entry name" value="Elect_transpt_acc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003168">
        <property type="entry name" value="Nitrile_hydratase_bsu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02211">
        <property type="entry name" value="NHase_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001427">
        <property type="entry name" value="NHase_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50090">
        <property type="entry name" value="SSF50090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03888">
        <property type="entry name" value="nitrile_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NHase_beta" evidence="6">
        <location>
            <begin position="1"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001410"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR001427"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="235" mass="26162" checksum="62B965A77B73317D" modified="2016-01-20" version="1">MNGVFDLGGTDGFGAVGPTPSEPVFHEEWERIVFGLQLGCFAGGWFNIDSFRHGIELMDPVHYLTSSYYEHWLATFERHGVAKGHIDADELDRRTQEYLDDPEKSLPVHEPNPALIEFVDAVVAGGSPATRPTDEPKRFEVGDVVRMRSFAPHGHTRLARYVRGKAGTVVAYRGSFVYPDHSGNELGESPQHLYTVQFDGAELWGELHAESNTSSTFDAWDPYIDAIEHREGATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK98</accession>
    <name>A0A0Q8VK98_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LLM class F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08850</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895658.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54226">
        <property type="protein sequence ID" value="KRC54226"/>
        <property type="gene ID" value="ASE19_08850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019951">
        <property type="entry name" value="F420_OxRdatse_Rv3520c_pred"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03559">
        <property type="entry name" value="F420_Rv3520c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="11"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="353" mass="38205" checksum="0DC157E7B9256BB9" modified="2016-01-20" version="1">MKLGMIVDYAGGFGETVELMQAYEQVGLELAAVPEAYSFDAASQLGYLAAKTEKLQLMSAIFQIYSRTPSLIAMTAAGLDYVSGGRFILGLGASGPQVVEGFHGLKYDAQLGRTREVVDICRQVWRREPVVHRGRNYTVPLTKEDGGSGLGKPLKIINHPVRSEIPVSIAALGEKNVTLVAEISQGWQPLFFHPLKAQQAWGDALAAGFEKRDPALGELDIQLQVNFHVGEPPAEVVQKVRDQLALYIGGMGARDKNFYNQLACRYGYEDEAKEIQDLYLAGRKGEAAAVVPQDLVEAVTLMGDEASIARQVEEFHAAGVRTFLLNPMAVDPADRVAHVRTLAGIVAGQGVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKJ9</accession>
    <name>A0A0Q8VKJ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chromosome partitioning protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04930</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894268.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54813">
        <property type="protein sequence ID" value="KRC54813"/>
        <property type="gene ID" value="ASE19_04930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="729012at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_31" evidence="1">
        <location>
            <begin position="9"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="263" mass="27850" checksum="DD76E9564A794BCB" modified="2016-01-20" version="1">MNAQAPRSTVLAVANQKGGVAKTTSVASIGAALAERGQSVLLVDLDPQACLTFSLGIDPEDLELSVHHVLTKGTAVDEVIIATEDGVDLLPATIELARAEADLLTRTGREHVLRGVMEDLAAAGTHYDWVLLDCPPSLGVLTVAALTAADGVLIPLQCETLSHRGVGQLLDTVHDVRRFTNRDLAVWGVLPTLYDGRTNHARAVLDTISETYDLEVVEPPIPKTIKFAEAPAAGRSILATSRNSKGAQAYREVAGALIDRAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL65</accession>
    <name>A0A0Q8VL65_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_05705</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54945">
        <property type="protein sequence ID" value="KRC54945"/>
        <property type="gene ID" value="ASE19_05705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2048383at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360161" evidence="3">
        <location>
            <begin position="34"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="270"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="148"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="156"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="173"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="294" mass="29155" checksum="ED1B7DF88B2CC1E6" modified="2016-01-20" version="1">MTGPRRILWSVAAALVAGAGLVLSPALSGPALAAGCPGSTGVTVFVDPNQLGGEITSGCSTGGGKAVDDFAQAGYTLEYATGTGMGGFVCKINGRPDDGDCTQASSYWSLWWSDGRSGKWVYSSRGVSSLQVPEGGYVAFAWYQGSGRAVPPDVVPTPRVSTPSPTPTSQPSPSVTPTHQQPSGGKHTPSESHSTANPSSSVSGSPSASATASGTDAASVSASSPATETAAAEPTDTGGTDLPQADEITAGPESDDVAHTDDEGGPIPTWAAVGLGVGVLGAAGAVPLIRRRLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLF9</accession>
    <name>A0A0Q8VLF9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07375</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895327.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53895">
        <property type="protein sequence ID" value="KRC53895"/>
        <property type="gene ID" value="ASE19_07375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1469904at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="222"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="249"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="293"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="361"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="387"/>
            <end position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="430" mass="45163" checksum="BEAF2D5937F521C8" modified="2016-01-20" version="1">MSATEEATEAAPRQKGAGSRLSLITVDQVLSSLSNIAALIWVAHAFDPVDFGRFSLIVMVYTVAQVAVRSLISTTVVVHPEEADERPRTILASATVTGLAAGVLTGLAGAGLLLSGSALAWPVLALAVPMPLLVVQDVGRYLSIARREPGRAVVIDGLWFLLMIVGFGGALAGGLDSLVWPVLLWSWAGGISGLWVFVQYGLPDRDGVAWVREHWSFSWRSLVSGVASSGITLLFASLMTLFSSALAVAAYRAATLLAAPSTAVQLAVSTAAATDIARDREDQGAWWGHVRKAIVICVAVGVVNLLVLVFLPDPIGWAVLGEAWDLVQPLMLAISCKVLLMAGQSGLRAALIGRHRIQTAMVTDIVALLLIGVCMVAGAALGDAEGALWAMAVGTAASTACWWVAIAWDNRAPRGRHAARGRQGVETRQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM10</accession>
    <name>A0A0Q8VM10_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Osmotically inducible protein OsmC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04560</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894328.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54754">
        <property type="protein sequence ID" value="KRC54754"/>
        <property type="gene ID" value="ASE19_04560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1430018at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003718">
        <property type="entry name" value="OsmC/Ohr_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036102">
        <property type="entry name" value="OsmC/Ohrsf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02566">
        <property type="entry name" value="OsmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82784">
        <property type="entry name" value="SSF82784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="167" mass="17301" checksum="D2C15CFD32E2F482" modified="2016-01-20" version="1">MDASTLRSAQAPLKDRYRTDPATARIPTGATGDYRDPEVTATIDGFAGPVRAGLHLAAGGDGQDACSADLLLQALLGCAGVTLRAVATAMGIEVRSAALRADGWWDARGTLGVDRAAPVGVQDVVVTVTLDTDADDAALDRLATATERYCVVGRSLAVPPRISVVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQQ9</accession>
    <name>A0A0Q8VQQ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_02635</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892755.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56737">
        <property type="protein sequence ID" value="KRC56737"/>
        <property type="gene ID" value="ASE19_02635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1130699at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000600">
        <property type="entry name" value="ROK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18964">
        <property type="entry name" value="PTHR18964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00480">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01125">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="303" mass="30318" checksum="99D145A011CE4017" modified="2016-01-20" version="1">MAHDHWIGVDIGGTKVLAVRIDAGGAVQSVATRPMPGRTAPYDAVEQAIADAAAEVSGGSAVAALGVSAAGLVDAAGERYLFGAHLPWRDAPVRLRLAERTGLPVVLDNDANCAAYAEVVAGAARGFSSVVLVTIGTGIGGALVLGGRVVRGAHGLAGEFGHMQAVPGGLACECGLRGCWEQYCSGRALERVTRVALGRHLDGPEVTAMALAGNEVARQAFASIGTWLGVGTAALVSAFDPEIVVIGGGVSAVGDLLLAPARAGLRGALQGTDHRPVPDLVPASLGPEAGAIGAALLARDGRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQY2</accession>
    <name>A0A0Q8VQY2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_01725</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896575.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59764">
        <property type="protein sequence ID" value="KRC59764"/>
        <property type="gene ID" value="ASE19_01725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="336531at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="44"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="127"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="417" mass="44309" checksum="C67890C1C7841EC7" modified="2016-01-20" version="1">MSTRTEHARHHTQILGAVGLAIIVTICGLLIATYQRAFADVVMVTVESDRAGLLLDEGARVRMSGVPVGEVRSTEPTADGKVRIEIALDADKADLIPADVVASLRATTAFGSKFVDLRSADGGSAGATIEAGAVITTDGVTVEANDVFQHGIDVLTAVDPVSLNSSLNAAATALDGRGEKFGQFFSDWDTYLKALDPHLGTLEDDLATAPTVLDTYADAAPKLIDTGDNFAVTSGTLTQQQGDLESALRGTVKGAESASRLLRALHGPLASFNRQWLPVTRLVAGYSQNVGCIIDGLNEHVRVFSKFFGNPEKDEHYFYAKTGFLPGMEPYTLEENRPKLVSGIKPTCYRSGTAQDPTVAHVNFDDGTKDVYEDANTDKPVGLAEDPVEFYGDLVHDWFGYDALGNLLGGGAEGSGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRE3</accession>
    <name>A0A0Q8VRE3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Peroxiredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04020</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892993.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56976">
        <property type="protein sequence ID" value="KRC56976"/>
        <property type="gene ID" value="ASE19_04020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1997912at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027396">
        <property type="entry name" value="DsrEFH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003787">
        <property type="entry name" value="Sulphur_relay_DsrE/F-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02635">
        <property type="entry name" value="DrsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75169">
        <property type="entry name" value="SSF75169"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="121" mass="12624" checksum="A2B0761B1FC37832" modified="2016-01-20" version="1">MSNKAVISLATGLEDPERVTVAFLVALGAAEHGRPTLMFLTKEAVRLAVPGVAVGRACEGCPSLPELLARFEAAGGTYLVCPLCFNAKALDPENLIGGAEIGGTVPMWQWIGDEGATSFSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRH8</accession>
    <name>A0A0Q8VRH8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01420</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896630.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59711">
        <property type="protein sequence ID" value="KRC59711"/>
        <property type="gene ID" value="ASE19_01420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1744037at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023187">
        <property type="entry name" value="Tscrpt_reg_MarR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01117">
        <property type="entry name" value="HTH_MARR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="27"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="176" mass="20064" checksum="788DEA3B5E17B5F2" modified="2016-01-20" version="1">MPDRHTLEETERAMKDHVGDLPLDFAAANALSNLFRAANAVRTELTNRVLRQHDMTWTGFVVLWVVWIWDGMETRHVAESADISKATLTGVVKTLEGRGLIVREGDERDRRLVRLRLTDEGTALMEQIYPEFNAVESEIVSQLSERKVSTFTRTLRDVVKAVELQTDARDEARDEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTU6</accession>
    <name>A0A0Q8VTU6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 15">Argininosuccinate synthase</fullName>
            <ecNumber evidence="6 15">6.3.4.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14 15">Citrulline--aspartate ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="primary">argG</name>
        <name evidence="16" type="ORF">ASE19_23325</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <reference evidence="16 17" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>ATP + L-aspartate + L-citrulline = 2-(N(omega)-L-arginino)succinate + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10932"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57472"/>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.4.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 15">Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 2/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 15">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 15">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 15">Belongs to the argininosuccinate synthase family. Type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.5" evidence="6 15"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892502.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58985">
        <property type="protein sequence ID" value="KRC58985"/>
        <property type="gene ID" value="ASE19_23325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="357142at2"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00113"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004055">
        <property type="term" value="F:argininosuccinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042803">
        <property type="term" value="F:protein homodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.400">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00581">
        <property type="entry name" value="Arg_succ_synth_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023437">
        <property type="entry name" value="Arg_succ_synth_type2_subfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001518">
        <property type="entry name" value="Arginosuc_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018223">
        <property type="entry name" value="Arginosuc_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024074">
        <property type="entry name" value="AS_cat/multimer_dom_body"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024073">
        <property type="entry name" value="AS_multimer_C_tail"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11587">
        <property type="entry name" value="PTHR11587"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00764">
        <property type="entry name" value="Arginosuc_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69864">
        <property type="entry name" value="SSF69864"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00032">
        <property type="entry name" value="argG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00564">
        <property type="entry name" value="ARGININOSUCCIN_SYN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00565">
        <property type="entry name" value="ARGININOSUCCIN_SYN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 15" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 15" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="13 15" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 15" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10 15" id="KW-0436">Ligase</keyword>
    <keyword evidence="12 15" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="15">
        <location>
            <begin position="17"/>
            <end position="25"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00014810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00029916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KRC58985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="476" mass="52308" checksum="318A534CA7FA3FE4" modified="2016-01-20" version="1">MSKVLTSLPVGERVGIAFSGGLDTSVAVAWMRDKGAVPCTYTADIGQPDEPDISGVPVRARQYGAEIARAVDIKPQLVEEGLAALACGAFHIRSGAKAYFNTTPLGRAVTGTMLVRAMQADDVNIWGDGSTYKGNDIERFYRYGLMANPELRIYKPWLDETFVRELGGRHEMSEWLVAHDLPYRDATEKAYSTDANIWGATHEAKVLEHLDVSLEIVEPIMGVKFWDPSVAIETEDVTVTFEAGRPVALNGKRYDDAVALVLEANTIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLFAAYERLLNAIHNEDTLANYHLEGRKLGRLLYEGRWLDPQALMLRESIQRWIASLVTGTVTLRLRRGDDYTIVSTEGPNFSYHPEKLSMERVENAAFGPTDRIGQLTMRNLDIADSRAKLELYAGQPLDQGTVLVENGTLFGELPPGGYDQITANPDGGDEAEAILDEVAMESGTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VU83</accession>
    <name>A0A0Q8VU83_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">DNA methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02215</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the N(4)/N(6)-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892681.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56663">
        <property type="protein sequence ID" value="KRC56663"/>
        <property type="gene ID" value="ASE19_02215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1487464at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006306">
        <property type="term" value="P:DNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002941">
        <property type="entry name" value="DNA_methylase_N4/N6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002295">
        <property type="entry name" value="N4/N6-MTase_EcoPI_Mod-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01555">
        <property type="entry name" value="N6_N4_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00506">
        <property type="entry name" value="D21N6MTFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N6_N4_Mtase" evidence="4">
        <location>
            <begin position="156"/>
            <end position="514"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="705" mass="78276" checksum="B5119370015D3499" modified="2016-01-20" version="1">MSRLSDLLLQVERSDPRLAADLRAEVKALENRRPFGLNFERHVPESVDLPGRPVRRGDKVRVLPPRGTTARGDSALWLVQRVASGVASLVGADGEARQVAVADLVVVAEFRDPIFPGLVSTGKVERGGADKPFHSVINAENHHALQALLYTHAGKVDAIYIDPPYNTGAKDWKYNNDYVDGEDAYRHSKWLSFMERRLKLAKRLLNPENSVLIVTIDEKEYLRLGLLLQQTFPEATVQMISIVINPSGTSRELLSRVDEYAFFCFVGDARPAEVFDDLLTDQQADGAKLGKAGVRWEWLLRGGGSWYRDQRPNLCYPVLMNEERTRMVGVGAPLSGAEASRPTRIDGAPVVWPLRNDGRLGIWRVEARKLETLIAKGYAHVSSKPGAEQPTLRYLLGGTVAEIESGERRVVGRGPRGEVLVEQVTTSRRQRPKTVWNRPQHIAGGGGGAQLLSRLFGDRGRFQFPKSLYAVEDALRLAVADKPDAVVLDFFSGSGTTAHAVMRLNKQDGGRRQSISVTNNEVGADEQKKLREQGLRPGDPEWERWGICDHITKPRIAAAVTGRTPDGDPIKGDYKFTDEFPMADGFEENVEFFTMTYETPRAVQHGRSFEAIAPLLWLRAGARGRRIDAPTDTFDVAEAYGVLFDVDAAGLFLDALASRPDARMAYVVTDDERAFQMVCADLPEHVIPVRLYESYLTNFTIGGHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUP3</accession>
    <name>A0A0Q8VUP3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Molybdenum ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_00530</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896785.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59555">
        <property type="protein sequence ID" value="KRC59555"/>
        <property type="gene ID" value="ASE19_00530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1200451at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015689">
        <property type="term" value="P:molybdate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004606">
        <property type="entry name" value="Mop_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005116">
        <property type="entry name" value="Transp-assoc_OB_typ1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03459">
        <property type="entry name" value="TOBE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51866">
        <property type="entry name" value="MOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 6" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="7"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="domain" description="Mop" evidence="8">
        <location>
            <begin position="284"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="30"/>
            <end position="37"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="346" mass="35911" checksum="C3ACED518F1EBF64" modified="2016-01-20" version="1">MSVNIDIRVADRDVEVAFDVAAGETVAILGPNGAGKSTTLDVVGGLLRPDAGRVALDGDVLTGDGRWVAPHARRTALLAQDPLLFPHLSVLENVAFGPRSRGTGRRAARASAEQWLAEVDATELAGRRPAQLSGGQAQRVAIARALAADPRLLLLDEPMAALDIAVAPALRQLLRRVLAGRTAVVVTHHVLDALLLADRVVVLEGGRVVEQGPARDVLSRPRSSFAARFAGLNLVAGTATPDGVRRPDGSVLHGTPGDPAPAAGDEAVAVFRPSAVAVHREPPGGSPRNALVVRIDELEPHGDTLRVRAGDLAADVTLAAATELGLAPGTEVVFVVKATEVSVHAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVK5</accession>
    <name>A0A0Q8VVK5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00780</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896748.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59593">
        <property type="protein sequence ID" value="KRC59593"/>
        <property type="gene ID" value="ASE19_00780"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="199"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="259" mass="28340" checksum="F76DA3B9692320F3" modified="2016-01-20" version="1">MEDGRDPRWWQFWRRAFWTRPAFLLVPALVGALAVPALAYDEYLSLRADGRLDHGCCLEEVTGVLDDDYDRRDFGQDFTVVVDDGTEHGRHLDIDVTFRASLRLDDFEGREVTAYLADDVVGQARVVAVRTPDGELVRAWGSGGRGVLLTLSYVGFGLAFGAGMLGFAVRKAAALRQAGHARTAWGTWWAVGDVRFDPVQLVPAALILNSSAILIGLAFGVPWWLLFGMPLLAAVALLVRARRSGGGRHARQSRPGPPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVT8</accession>
    <name>A0A0Q8VVT8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">AraC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01205</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896668.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59673">
        <property type="protein sequence ID" value="KRC59673"/>
        <property type="gene ID" value="ASE19_01205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="915852at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004536">
        <property type="term" value="F:deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01310">
        <property type="entry name" value="TatD_DNAse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015991">
        <property type="entry name" value="Hydrolase_TatD-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001130">
        <property type="entry name" value="TatD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01026">
        <property type="entry name" value="TatD_DNase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005902">
        <property type="entry name" value="DNase_TatD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00010">
        <property type="entry name" value="TIGR00010"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="281" mass="30114" checksum="02111AEF2ED4D17C" modified="2016-01-20" version="1">MSEERPPVPEPLPHPVVDNHCHLDIGRGEEAWAADEAIAAAAAVGVPRIVQIGCDLPGARWAVAAAREHAALVAGVALHPNEAPRILEAGGRAALEAAWEEIEQLAGAHEKVRAVGETGLDAFRTGEDGRAVQVESFARHIDIAKRLGKTLVIHDRDTHDEVLEVLDAEGTPERWVMHCFSGDADFARACLDRGAHLSFAGTVTFKNAEPLREALRLAPRDRVLVETDAPYLTPSPYRGRTNASYLVPVTVRAMAAERGDDLAELCAAIDANTEAAFGGGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVW3</accession>
    <name>A0A0Q8VVW3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917918.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58861">
        <property type="protein sequence ID" value="KRC58861"/>
        <property type="gene ID" value="ASE19_22610"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="121" mass="12383" checksum="77B85209DB2BFB34" modified="2016-01-20" version="1">MMLDAPSAARSPSVPAAPAWALVLGQMATVLAAVGYELSPAAGPTDSDAHVRAEFASFFVVPLVWLALFVAGLWMLRRPRGTRTRVALLVGTAASGTCAVVGIAFAMLLLVGGVLLTASGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXC7</accession>
    <name>A0A0Q8VXC7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Amino acid permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_22895</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892571.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58914">
        <property type="protein sequence ID" value="KRC58914"/>
        <property type="gene ID" value="ASE19_22895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="527053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="32"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="60"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="149"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="182"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="239"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="279"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="331"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="377"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="402"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="435"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="461"/>
            <end position="479"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC58914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="499" mass="52173" checksum="14EB123D005573F1" modified="2016-01-20" version="1">MSLFRTKSVEQSIADTDEPDHRLRKDLSALDLTVFGVGVIIGAGIFVLTGTVAASNAGPALALSFVIAAVACGLAALCYAELASTVPVAGSAYTFSYATLGELVAWIIGWDLVLEFTVGAAALSTGFSAYLQEVLDIGGVTLPSQISSAATGVVDLPAVVIALLVTWMLIRGTKFSSRFNQVVVALKLVVVAAVIVVGIAHIDVSNWTPFIPDAQPAPESSGGFADVPLITSLLGLEPAVFGLAGVISGAAIVFFAFIGFDIVATTAEETRNPQRDVPIGILGSLAIVTVLYSAVSLVVTGVRSYRDIDPDSAAPLADAFEGAGVDWMPNLISVGACIGLVVVAMILMLGQSRVAFAMARDGLLPRQLAKVHPAYRTPYRITIVTGLAVAALAGFVDLSTLAHLVNIGTLFAFTLVSIGVVVLRRTRPDLPRGFRTPAAPVVAAISVLMCLYLMLNLTGDTWIRFVVWMALGCVVYAVYGRRHSRLGRAGEPRGNSLST</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYT2</accession>
    <name>A0A0Q8VYT2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00725</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59809">
        <property type="protein sequence ID" value="KRC59809"/>
        <property type="gene ID" value="ASE19_00725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2010577at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019681">
        <property type="entry name" value="DUF2530"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10745">
        <property type="entry name" value="DUF2530"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="81" mass="9176" checksum="0A570A69B134E078" modified="2016-01-20" version="1">MGKRTYLIAPVEPLDVDGVRTVQVGTALFAIAFLALLPFYGRLEEDDRTWLLWMCLTGVGLGLLGMEYCKRRRSVRAELDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZA8</accession>
    <name>A0A0Q8VZA8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_01355</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytosol</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FliS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59698">
        <property type="protein sequence ID" value="KRC59698"/>
        <property type="gene ID" value="ASE19_01355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1730695at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16098">
        <property type="entry name" value="FliS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003713">
        <property type="entry name" value="FliS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036584">
        <property type="entry name" value="FliS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34773">
        <property type="entry name" value="PTHR34773"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02561">
        <property type="entry name" value="FliS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101116">
        <property type="entry name" value="SSF101116"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00208">
        <property type="entry name" value="fliS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="5" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC59698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="130" mass="14199" checksum="7482D4E63BFE2B54" modified="2016-01-20" version="1">MYATRSMHSAQSAYRENSVATASPARLLVMLVERLVLDGERALAAQQAGDWPAAHQHLLHAQDVVAELEASLDVDRMPAGKQLAALYQYLRGLLVEANVRRDAATTEEALGLSRQLCDTWREAAMAAAIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZN0</accession>
    <name>A0A0Q8VZN0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 12</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00730</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896894.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59810">
        <property type="protein sequence ID" value="KRC59810"/>
        <property type="gene ID" value="ASE19_00730"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="64"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="220" mass="23148" checksum="2B00D7445746E08F" modified="2016-01-20" version="1">MQAPTQRARRARPVTEPLRPTRWALGGARNVGYGERFAELMERGEDVFGEARLADAMVPRGATVLDAGAGMGRIGAHLQAQGHRVVAAEPDPALVAQARETWPQLVVVPLEILALTPEALTAAGAPTAYDLVVCVGNVLTFLAEDSEVAVLAHLGSLLAPGGRILAGFHLSGGPATARSYAPEAFVADAAAAGLRVDHRFGGYDLRPVDDQYAVWVLSRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM68</accession>
    <name>A0A0Q8UM68_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Competence protein ComEC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_19625</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895866.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46090">
        <property type="protein sequence ID" value="KRC46090"/>
        <property type="gene ID" value="ASE19_19625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1796527at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07731">
        <property type="entry name" value="ComA-like_MBL-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035681">
        <property type="entry name" value="ComA-like_MBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004477">
        <property type="entry name" value="ComEC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03772">
        <property type="entry name" value="Competence"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00360">
        <property type="entry name" value="ComEC_N-term"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="24"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="52"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="229"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="261"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="308"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="387"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="423"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="449"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="482"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="domain" description="Lactamase_B" evidence="7">
        <location>
            <begin position="523"/>
            <end position="721"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="766" mass="77907" checksum="D3C2FD252B419C50" modified="2016-01-20" version="1">MPALGGAAWLGGIAAQRLLGHSAWLLAALLVMALVVGWPPHGGRPRGAHRGMAVAMLLMAAAVLAGALLRHQAMTTSPLRAWADQRATADLVATVVSDPRRVDGAWGERVVVRIRVEEVAARGERRRLGGTVVVLGVPAWSAAELGEQVFVEGRLAPSESSDAVAVLSADRPPVRIRGPDPWWRASGAVRASIRQAVADRPPAQAGLVPALVDGDDAALPDEVEADFRVVGLTHLTAVSGTNLTLVVGALLLAARAVGVRGRWLVVVGLLGITSFVLLARTEPSVLRAAAMGTVGLFAFGPDGRRRGLRALGVALAVLVLVQPALATSAGFALSVLATGGIVLLGPPLTDALARWLPRGLAEAVAVPTAAQLACTPVVAVLSGQVSLVAVAANLLAGPAVGPATVLGLLGGLVGLVWPTGGQLLGTAAAWCVAWIVAVARHGAALPGAAIGWGTGTGAIALLVLVCLAIAVLLPRLARHRSLGAVLGVLLLLVVLGFPGRVWPGGAFGWPPDDWVLAVCDVGQGDALALSVAPGAAVVVDAGPDPATVDGCLDRLDVERVPLVVLTHFHADHVDGLSGVLRGRQVGAIETSPVQDPPGGAAQVRRDAEAAGVPVRPATYGAARRIGAATLQVVHLEVAGEVSGAGDGSSANDASVVLVVEVAGLRLLLTGDVEPPGQAQLARLLRGLDVDVLKVPHHGSSHQDESWLTGLHPEVALVSVGADNDYGHPAPALLSDLEDAGAQVHRTDEEGDLVVVVGDDGPEVVSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UME8</accession>
    <name>A0A0Q8UME8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AsnC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20205</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_028655943.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46187">
        <property type="protein sequence ID" value="KRC46187"/>
        <property type="gene ID" value="ASE19_20205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2031076at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AsnC_trans_reg" evidence="1">
        <location>
            <begin position="7"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="78" mass="8388" checksum="8161F3DDB7F7FE80" modified="2016-01-20" version="1">MVVQAYILIQTDVGKAAEVAREVGNIKGVTLAEDVTGPYDVIVRAEARNVDELGKLVVSKVQNLEGITRTLTCPVVHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMF6</accession>
    <name>A0A0Q8UMF6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Thiamine-monophosphate kinase</fullName>
            <shortName evidence="2">TMP kinase</shortName>
            <shortName evidence="2">Thiamine-phosphate kinase</shortName>
            <ecNumber evidence="2">2.7.4.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">thiL</name>
        <name evidence="5" type="ORF">ASE19_20200</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the ATP-dependent phosphorylation of thiamine-monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + thiamine phosphate = ADP + thiamine diphosphate</text>
            <dbReference type="Rhea" id="RHEA:15913"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37575"/>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; thiamine diphosphate biosynthesis; thiamine diphosphate from thiamine phosphate: step 1/1.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="2">Reaction mechanism of ThiL seems to utilize a direct, inline transfer of the gamma-phosphate of ATP to TMP rather than a phosphorylated enzyme intermediate.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the thiamine-monophosphate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.16" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895960.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46186">
        <property type="protein sequence ID" value="KRC46186"/>
        <property type="gene ID" value="ASE19_20200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1016556at2"/>
    <dbReference type="UniPathway" id="UPA00060">
        <property type="reaction ID" value="UER00142"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009030">
        <property type="term" value="F:thiamine-phosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02194">
        <property type="entry name" value="ThiL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02128">
        <property type="entry name" value="TMP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006283">
        <property type="entry name" value="ThiL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30270">
        <property type="entry name" value="PTHR30270"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005303">
        <property type="entry name" value="Thiam_monoph_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="SSF55326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="SSF56042"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01379">
        <property type="entry name" value="thiL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 5" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AIRS" evidence="3">
        <location>
            <begin position="42"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS_C" evidence="4">
        <location>
            <begin position="165"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>4</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="135"/>
            <end position="136"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="224"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>5</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="275"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="323"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="326" mass="32931" checksum="B5C14D3164720962" modified="2016-01-20" version="1">MTSGAASDATLADVGEFGLIARISDIVAATAPGEDVLVGPGDDAAVLRVRKGHVVVSTDVMVEGRHFRRDWADAADVGARAAAQNLSDINAMGGRAQWLTVGLAAPADLPAQWALDFTRGFAEECARVGAGLVGGDVSRADQIVVSVTAIGACTVSPVLRSGAAAGDVVALCGRQGWAAGGLAVLGRGFRSPRVLVEAYRRPAPPYDAGQVAAEAGATAMVDISDGLLAEAQHVAEASGVSIDITTDAFEVPEPLLAVGQATGADPLQFILGGGDDHALLATFPSDVALPEGWTRIGSVGAAPQGGEPFVTVDGASYEGPTGWAHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMG0</accession>
    <name>A0A0Q8UMG0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphopantetheine adenylyltransferase</fullName>
            <ecNumber evidence="6">2.7.7.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Dephospho-CoA pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Pantetheine-phosphate adenylyltransferase</fullName>
            <shortName evidence="6">PPAT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">coaD</name>
        <name evidence="8" type="ORF">ASE19_20175</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>(R)-4'-phosphopantetheine + ATP + H(+) = 3'-dephospho-CoA + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:19801"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57328"/>
            <dbReference type="ChEBI" id="CHEBI:61723"/>
            <dbReference type="EC" id="2.7.7.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 4/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the bacterial CoaD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.3" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895957.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46182">
        <property type="protein sequence ID" value="KRC46182"/>
        <property type="gene ID" value="ASE19_20175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1846503at2"/>
    <dbReference type="UniPathway" id="UPA00241">
        <property type="reaction ID" value="UER00355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004595">
        <property type="term" value="F:pantetheine-phosphate adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02163">
        <property type="entry name" value="PPAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00151">
        <property type="entry name" value="PPAT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001980">
        <property type="entry name" value="PPAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21342:SF1">
        <property type="entry name" value="PTHR21342:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01020">
        <property type="entry name" value="LPSBIOSNTHSS"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01510">
        <property type="entry name" value="coaD_prev_kdtB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 6 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CTP_transf_like" evidence="7">
        <location>
            <begin position="6"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="9"/>
            <end position="10"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="88"/>
            <end position="90"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="122"/>
            <end position="128"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="6">
        <location>
            <position position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00029346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="17102" checksum="03176E8B0F151FAE" modified="2016-01-20" version="1">MTRAVCPGSFDPVTNGHVDIFRRASALFDELVVATGTNISKSRLFDPEERLEMLREACADLPNVTVMGFTGLIVDFCRQIDAQAIVKGLRGGNDYEYELPMAQMNAHLTGVETVFVPTTASLGYVSSSLVKEVASLGGDISGLVPPAVQVRLAARLAER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMU3</accession>
    <name>A0A0Q8UMU3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AMP-dependent synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895855.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46079">
        <property type="protein sequence ID" value="KRC46079"/>
        <property type="gene ID" value="ASE19_19565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="164380at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="23"/>
            <end position="476"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="607" mass="66071" checksum="28162DAFFF6DA3DF" modified="2016-01-20" version="1">MPINHDTSFLQNMPKNCAVQFLDRVEHSANREAFRFPRGEAWESVTWRQAGDRVRRLAAGLLALGLESEQRVGIASSTRYEWILADLAVMCAGGATTTVYPSTGGEDTAYIVGDSECRIVFVEDESQLQKLRDHRDELPALSKVVSFDPALADGDWVISLDQLSELGDAHLAEKPDSVDEVARAIEPDHLATLIYTSGTTGKPKGVRTLHKAWVFEGEAIKAQNILGEDDLQFLWLPMAHSFGKVLLSTQLACGFATAIDGRVDKIVDNLGIVKPTFMGAAPRIFEKAHARIVTMTASEGGAKEKIFKKAFEVGTAVDQLKLAGKPIPVGLKVQHALFDKLVFSKVRDRFGGRVKFFISGSAALNADIAAWFHAAGILILEGYGMTENAAGATVNHPDAYKLGTVGQPFPGTEVRIAEDGEVQLHGPHVMAGYHNRAEATADAITADGWLRTGDKGELDADGFLKITGRIKELFKTSGGKYIAPPAIEAKFKAICPYASQFMVFGAERNFVSALVTLDPDAIAGWAAENGKQGKDYTELVNDEAVQALVADYVEQLNAQLNRWETVKKWKLLDHDLTIESGELTPSLKVKRNVVEANNSDLIASFYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNG7</accession>
    <name>A0A0Q8UNG7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 8">Transcription elongation factor GreA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Transcript cleavage factor GreA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">greA</name>
        <name evidence="11" type="ORF">ASE19_22050</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7 8">Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the GreA/GreB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896271.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46501">
        <property type="protein sequence ID" value="KRC46501"/>
        <property type="gene ID" value="ASE19_22050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1536415at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070063">
        <property type="term" value="F:RNA polymerase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032784">
        <property type="term" value="P:regulation of DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00105">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036953">
        <property type="entry name" value="GreA/GreB_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018151">
        <property type="entry name" value="TF_GreA/GreB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006359">
        <property type="entry name" value="Tscrpt_elong_fac_GreA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028624">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001437">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023459">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022691">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036805">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30437">
        <property type="entry name" value="PTHR30437"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01272">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03449">
        <property type="entry name" value="GreA_GreB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006092">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46557">
        <property type="entry name" value="SSF46557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01462">
        <property type="entry name" value="greA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00829">
        <property type="entry name" value="GREAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="11" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 7 8" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="GreA_GreB_N" evidence="10">
        <location>
            <begin position="12"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="GreA_GreB" evidence="9">
        <location>
            <begin position="89"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC46501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="168" mass="18412" checksum="C3959EEDCE01E870" modified="2016-01-20" version="1">MTQTDQSGANVVWLTQDAYDKLKAELEHLKGPRRAEIVAEISAARDEGDLKENGGYHAAREEQGKNEAKILQMEDMLRRAEIGETPPDDGVVEPGMVVTYKFEGDDDDEAESFLLGAREIEPEGLTVYSPQSPLGQAINGRSKGETVSYEVNGRSQTVIILDAKPYTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UT38</accession>
    <name>A0A0Q8UT38_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19590</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895859.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46083">
        <property type="protein sequence ID" value="KRC46083"/>
        <property type="gene ID" value="ASE19_19590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2041404at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="93"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="93"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="132" mass="13926" checksum="BCCE75D5838AB2D1" modified="2016-01-20" version="1">MTSHRGGPEDRPHRWRSAAVGVGLTGLVAASFVSCEDNPDHRAICTDPQTQQRVDDDLCDDSDDDYHGHGGGFYWYYLRAGSNAPAVGDRYSTSGGTYDSSSLSGSVKRGGVDTHGGSIKRGGFGGVHFSGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU70</accession>
    <name>A0A0Q8UU70_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">3-oxoacyl-[acyl-carrier-protein] synthase 3</fullName>
            <ecNumber evidence="7">2.3.1.180</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">3-oxoacyl-[acyl-carrier-protein] synthase III</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Beta-ketoacyl-ACP synthase III</fullName>
            <shortName evidence="7">KAS III</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">fabH</name>
        <name evidence="10" type="ORF">ASE19_17305</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>acetyl-CoA + H(+) + malonyl-[ACP] = 3-oxobutanoyl-[ACP] + CO2 + CoA</text>
            <dbReference type="Rhea" id="RHEA:12080"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9625"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="ChEBI" id="CHEBI:78450"/>
            <dbReference type="EC" id="2.3.1.180"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="7">The last Arg residue of the ACP-binding site is essential for the weak association between ACP/AcpP and FabH.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the thiolase-like superfamily. FabH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.180" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893104.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48698">
        <property type="protein sequence ID" value="KRC48698"/>
        <property type="gene ID" value="ASE19_17305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="872193at2"/>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033818">
        <property type="term" value="F:beta-ketoacyl-acyl-carrier-protein synthase III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01815">
        <property type="entry name" value="FabH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013751">
        <property type="entry name" value="ACP_syn_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013747">
        <property type="entry name" value="ACP_syn_III_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004655">
        <property type="entry name" value="FabH_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08545">
        <property type="entry name" value="ACP_syn_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08541">
        <property type="entry name" value="ACP_syn_III_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00747">
        <property type="entry name" value="fabH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="4 7" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2 7" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACP_syn_III" evidence="9">
        <location>
            <begin position="116"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="domain" description="ACP_syn_III_C" evidence="8">
        <location>
            <begin position="240"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="region of interest" description="ACP-binding" evidence="7">
        <location>
            <begin position="257"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="256"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC48698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="331" mass="34613" checksum="1D9D81D5A8BDAC48" modified="2016-01-20" version="1">MSGIRTEQGAAHARILGIGSYRPARIVPNSEIVDAIDSSDEWIQQRSGIRTRRFADDTETVVSMAVAASRTALERAGVDAQQIDAVVVATVSHLLQTPSAATAIAHALGTAQPAAFDISAACAGFCHGVALANDMVRGGSARHVLVIGVEKLSDITDPTDRGTAFIFADGAGAVVVGPSDEPGIGPVVWGSDGEHYDHIRTPDVREIIADGEGMPYLSMKGSEVFRWASYAMAKVAQQALDRAGVTVDQLDCFVPHQANNRITDAMARTLRLPDTVKIARDIIDAGNTSAASVPMALDRMIAEGDAKSGDLALLIAFGAGLAYAAQVVTVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU94</accession>
    <name>A0A0Q8UU94_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_17575</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893145.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48741">
        <property type="protein sequence ID" value="KRC48741"/>
        <property type="gene ID" value="ASE19_17575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="9"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="130"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="249"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC48741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="417" mass="45080" checksum="1BFF7F7C653F32AE" modified="2016-01-20" version="1">MAIDFTLSEEELGLRKQARAFADEVLSGVADAIAPFADPLDRFRAIRPFYEQMVAGGFLRGLVPAQYGGGRFTNLQFALACEEIARVDVNVASALLGTGLGLHPIIVGGTEEQKERFLRPFTGDQPRLGAIAFTEAAGGANYDSPDPAAGTQTFAELVGDEWVINGKKAYTTNASGWDDRGADLISVMVRTDMSRPSSESLAVIVVEAGTPGVEITGMIDTIGHLATNSPVVEFNDVRVPVSNMIGSPGDGLELIKAAFSWTCSSIGAACVGRMRAAFDFAYEFTRTDHRSGPHPVLEYQNAGYMLADIKTRIEAARYFAWKAADHYDKTGGKDRELANMVKIFNSELSVQTVYDAMRLVGVEAYGDRTPIASIMQDVLCFPVYDGGNMGVRRRAIHEMLLNPAFDPLAAGENRLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUC7</accession>
    <name>A0A0Q8UUC7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17860</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893192.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48790">
        <property type="protein sequence ID" value="KRC48790"/>
        <property type="gene ID" value="ASE19_17860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2076485at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="108"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="135"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="17548" checksum="B3B655FE60AA270D" modified="2016-01-20" version="1">MSESKPVLKSWYGLFLCLMCLAVSAVAVPFWIAADQGDGTFGTYTAETEECYVTKCDWIGTWVSDDGTMRREKVHSGHSDLHEPGDQVRLQKGVSGDESMYSEDSSKGWIIILLGDIGCLIFVVLFIRGRVRARRAGAAAPPPPPPGSGGEDVPTGEPRAQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUK6</accession>
    <name>A0A0Q8UUK6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_18400</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893287.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48886">
        <property type="protein sequence ID" value="KRC48886"/>
        <property type="gene ID" value="ASE19_18400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1570162at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025996">
        <property type="entry name" value="TetR_C_WHG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13305">
        <property type="entry name" value="TetR_C_33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="5">
        <location>
            <begin position="13"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC48886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="227" mass="23891" checksum="A6BDA3EA6AEC6EC7" modified="2016-01-20" version="1">MARDSTTTDGPSNGIPERLIEAAVAMLAEEGPSAIKARAVAARAGMSSMVVYNYFGGVPELLSAVQDHGFDQLGQAFAEVGASEDPVADLFTMALTTLSYARANPHLYDAMFGLSTRATYRPTPAKGERRAGHSPAFHAAYAHVIAAAARMGDDGGLTIEDPAAAAGALWSFVHGYVTLELSHHFAEFADPVWQVLVPMGVTFCVGLGADRAAALASHETALRRAWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUR3</accession>
    <name>A0A0Q8UUR3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18040</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893221.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48820">
        <property type="protein sequence ID" value="KRC48820"/>
        <property type="gene ID" value="ASE19_18040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="312576at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359448" evidence="2">
        <location>
            <begin position="37"/>
            <end position="1141"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="560"/>
            <end position="579"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1141" mass="121086" checksum="9BACD4326ACA6183" modified="2016-01-20" version="1">MGRLTSRGIPLLAGAASAAATLALTVGVTPSGPADAGPVRGPAAHADGFDPVAFADPPPESRPMIYWYWTGTVTPAVVDAQMAEMRAKGIHEAVLFPYGGAGMQPAYFTEGWFDIVEHVLREAQRTDMRIWLFNDSNFPSGKAGGIIANGGKVGDKTYEPSPQLRLKALQRSTRVVEGPATIDPNESSGLSVAEGRLVVDAAIREGMHPLVAGAAWTDYTVTGKVRLTASGAQLVVRASADGTKGYLVDVDVKGRASVWRLDGANRTRLTQGVPAPGFHPRNEQTITVTVTGDRIAPVINKTVQPVAVDATYPTGAPAVSAEYGGEGIEDAVPGLQRVSWNGLSVTTPAGQELWSDTFDDASDLDEWGGPLVRIDGAVAAAARPDGSTDAAELVELTPNLGTGAWQVPAGRWQVDTYGKAVLTDDSSGYHRGYLDLLDPVATDRLFEVAQGEYVRRFGWAMGTVVPGFWDDEPFISSAEPWPFKRLPWSASLEDLVTQAGSTPGVAYTAAFEELGRTGEQYSGAYWRAVNNAFATHYFQRQAGWMADRGLQLITNPLLDEDSPQKRMHSTGDLSKDNQYAQVPGTDMITSDYVAGKQTMLGRNAAASAHASGAERALSEVFGNSGWGVAPEFIHQTVGALTTRGINDYALHAMWTDEQQIFFAPPFGPASTYWDAMGDVDAWIGRVSELARGTSLARTALLQPQRAAEQTRTSDAEHRLDADLSGTAYALERGQVDFDMVSDGAFAGDPHTRYHAKPSAGRLHVGAASYDMVVVPRTPVLDLETVETLAGLVGSGGRVVVVGPLPTHEAKGRDARLAAALDELFGGATSSWTRHQAGRVAVVDDVASLGALSREADAAAAVLSPAAPAVRVLRTGRDGDVAFLVNNESGQPVRTSASLPVDGVPELWDLRSGRTALAATYDDAGHDETTVPLELDPYETVAIVFRKGTKAAPHLTGAVVAQDVTRDGGALSATVLSDQPGTFPVVGQDLGRVFRGTATVRDALQPIALAGPWTIQLERAGEAARPTELGSWTVTDPKFSGSATYRTSIDLTAAERHGRRLLLDLGQVRDLAQVTVNGTVLPRALWSPYVVDVTDALRTGSNSIAVRVTNTLLNTRSKTPPPSGLLGPVVLRPQAVVDVRLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUU6</accession>
    <name>A0A0Q8UUU6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">N-formimino-L-glutamate deiminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18800</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893354.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48952">
        <property type="protein sequence ID" value="KRC48952"/>
        <property type="gene ID" value="ASE19_18800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1592010at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010252">
        <property type="entry name" value="HutF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43608">
        <property type="entry name" value="PTHR43608"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02022">
        <property type="entry name" value="hutF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="47"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="417" mass="44234" checksum="6BF9963C5E513C0A" modified="2016-01-20" version="1">MTAYLLEKAWVDGAVREAVRVEIEDGVFTSVEPDARRTATPLRGLTLPGFANTHSHAFHRALRGRTQRGSGTFWTWREQMYDAAARLDPDNYFALARATYAEMLAAGYTSVSEFHYVHHQPDGTPYDDPNALGHALVAAAEATGIRLTLLDTCYLAGGIGQPVAGSQVRFTDGDADRWAERVAAIRHDRVGGAIHSVRAVPREQMPTVVAALRGRPLHAHVSEQPAENEACLAAYGLTPTGVLAEAGALGPDATAVHATHLTDADIALLAATDTEVSLCPTTERDLGDGIGPARQLADAGVRITIGSDSQAVVDPFEEVRAWEMDERLGSISRGRFSASDLLARTTGRIAVGEPGDLVTIDLASPRTAGTGADEHTAVFAATSADVTHVVAGGRPVFDGDHARIGRDLGAAIDGVWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUZ6</accession>
    <name>A0A0Q8UUZ6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Dihydroorotate dehydrogenase (quinone)</fullName>
            <ecNumber evidence="11">1.3.5.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">DHOdehase</fullName>
            <shortName evidence="11">DHOD</shortName>
            <shortName evidence="11">DHODase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Dihydroorotate oxidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">pyrD</name>
        <name evidence="13" type="ORF">ASE19_19315</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 11">Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>(S)-dihydroorotate + a quinone = a quinol + orotate</text>
            <dbReference type="Rhea" id="RHEA:30187"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
            <dbReference type="ChEBI" id="CHEBI:30864"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="1.3.5.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
        <text evidence="11">Binds 1 FMN per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 11">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; orotate from (S)-dihydroorotate (quinone route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 11">Cell membrane</location>
            <topology evidence="3 11">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 11">Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.5.2" evidence="11"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893440.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49038">
        <property type="protein sequence ID" value="KRC49038"/>
        <property type="gene ID" value="ASE19_19315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1109542at2"/>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00946"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004152">
        <property type="term" value="F:dihydroorotate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04738">
        <property type="entry name" value="DHOD_2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00225">
        <property type="entry name" value="DHO_dh_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005720">
        <property type="entry name" value="Dihydroorotate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012135">
        <property type="entry name" value="Dihydroorotate_DH_1_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005719">
        <property type="entry name" value="Dihydroorotate_DH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001295">
        <property type="entry name" value="Dihydroorotate_DH_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01180">
        <property type="entry name" value="DHO_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000164">
        <property type="entry name" value="DHO_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01036">
        <property type="entry name" value="pyrD_sub2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00911">
        <property type="entry name" value="DHODEHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00912">
        <property type="entry name" value="DHODEHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 11" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7 11" id="KW-0288">FMN</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="9 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8 11" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DHO_dh" evidence="12">
        <location>
            <begin position="53"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="11">
        <location>
            <begin position="117"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="11">
        <location>
            <begin position="256"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="11">
        <location>
            <position position="187"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="68"/>
            <end position="72"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="189"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="227"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="255"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="281"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="310"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="331"/>
            <end position="332"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC49038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="351" mass="37398" checksum="4735D1B316517926" modified="2016-01-20" version="1">MRAQRASKSIYDRVFDNVLVRMDAEKAHHLTYDALKAGGPVLTRARIPGRHPVEAMGLTFPNRLGLAPGFDKTAEVYDRMGAFGFGHVEIGTVTALAQPGNPKPRLFRLPEDRAIVNRMGFNNDGAEAVARRLAKRRAKPGGLVLGVNIGKSKVVPDDDQAAVEADYETSTRLLAPYADYLVVNVSSPNTPGLRNLQAVEKLAPLLAHVRRTADRVTGDRQVPLAVKIAPDLSDDDVLAVADMSLDLGLAGIIATNTTISRAGLRTPAADVEALGAGGVSGAPLTQRSTEVVRLLRGRVGDRISLIGVGGISTPDDARERVAAGADLVQVYSGLIYGGPSWPKQLLRALRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV34</accession>
    <name>A0A0Q8UV34_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18870</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48964">
        <property type="protein sequence ID" value="KRC48964"/>
        <property type="gene ID" value="ASE19_18870"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021398">
        <property type="entry name" value="DUF3037"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11236">
        <property type="entry name" value="DUF3037"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="153" mass="16205" checksum="06454E63C80E5D17" modified="2016-01-20" version="1">MAARGARGGGRVTESGGYRPYQYVTLRCVPRVEREEFVNVGVVLHCPDADFLGVLSAVDEDRVRALDAEVDIASVTAALAAIEKVCRGEAHSDFGVGVRATAYGSRAARDDASTRFGFLKAPRSTVLQPGPVHGGVTADPQATLEHLLATLVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWX5</accession>
    <name>A0A0Q8UWX5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21005</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896092.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46321">
        <property type="protein sequence ID" value="KRC46321"/>
        <property type="gene ID" value="ASE19_21005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045823">
        <property type="entry name" value="TetR_C_32"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19344">
        <property type="entry name" value="TetR_C_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="19"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="217"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="218"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="236" mass="25078" checksum="611A438A4D0E0BA6" modified="2016-01-20" version="1">MAPNVKSDGRTTRWENHRATRRAEFVQAAVRAIDTLGPDASVADIAAEAGVSKPVLYRYFADKSELHAAVGAWGTDLVLERVIAAVLVPASARDRVTAGVEAYLTTIAEHPQAFLLLTRQHAGGDPLAAGKDLIATKLSRMLGDALRLLGGDTGAAEPWAHAVVGLGSSVGQWWLERRTMSRAAAAGYLGEFIWHALSGAAAEHGVDLSALDPEVGNVRPLRTERTERAGSKDAEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UX56</accession>
    <name>A0A0Q8UX56_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21805</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896230.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46461">
        <property type="protein sequence ID" value="KRC46461"/>
        <property type="gene ID" value="ASE19_21805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="39"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="397"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="417" mass="43775" checksum="381E4AC84A0C1D3A" modified="2016-01-20" version="1">MNPRSKTLGAALAVIGLLAVSLYAAIFASAGLPGSSRDYVTVRFSDVGGLREGDDVREASVRVGRVDAIDLDGDEALVRLQLSGDKPVYADATAAVWARSGLGQNFVELNRGHADAGDLEGEELPPTQTLPASQLDDLLSVLDRPTREGLASTLREVGGGVEGQSAHLAAFLTHAPELLGDLGAVSTATASQRADLAGLLDASSDLASRFRGREDHVESLLGKMDTTLQALDADHGRALRQTLEKAPAALEETGRGLASLEQPLINLEAAARSLEPGAAALGRSTPALRAVLRGGQKPLERVPGVADLAEPAVGELATAVGDVRPVTERLEGTFTYADVLASYMSPYARDISQFFDYWHSANGNSDKLGHYLRLGLIARPESIDGILPIADPFTHRNPYPAPGTAQLDRSNGLLGGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UX92</accession>
    <name>A0A0Q8UX92_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21545</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896187.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46417">
        <property type="protein sequence ID" value="KRC46417"/>
        <property type="gene ID" value="ASE19_21545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="989110at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359505" evidence="1">
        <location>
            <begin position="32"/>
            <end position="441"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="441" mass="45471" checksum="7A0CFE43F28D1472" modified="2016-01-20" version="1">MRIRRLAALSAALLTTGLLGVAPTFAGSASAAESEWQDGTSSSDTIINCPTQTPGIGFSANTGWRSPTGEVPKIGEEFWIRGYIGLISLPCNAEGAGITIPEIILPAGVQFVDEPVRWALYTAGTPANLSTGGLEYWDGVNGGATITQTGDKPFTVKRGQILEFQLRIRSTRELKGPATQAPTCIERREGTAPCPRSQSGDHLQFAFNVGGHGGDKYYVTPYVPLFAAQAGTGGGGDTTAPVTSLGAGPANGAIVPSTSASFTLGSSEAGSRFACTLDGRARTCAGGAQTVTGLAPGTHTFTAKATDQAGNADASPAARTWTVPVPARSLTRSAGWALATSSRSYGGKVAATTRRSASLSYSVRNARRLALVASGGTTHGTVRVYAGSRLVKTVALRTSRTTTKRVIPVASFAGAWSGKIRIVVVTSGKPVRIEGLAVPTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXM6</accession>
    <name>A0A0Q8UXM6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HxlR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893495.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50026">
        <property type="protein sequence ID" value="KRC50026"/>
        <property type="gene ID" value="ASE19_15510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1919329at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="21"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="158" mass="17014" checksum="844C550DE2EA7669" modified="2016-01-20" version="1">MSMQVAGGLARRGDVPLGAACPIDRAMGLLGNRTSMLLLREVFYGARRFEQLVRRVGVTDAVAAQRLRELVAAGVLAKQPYREPGQRTRQEYVLTESGAALAPILAGLLEWGRTHLPDDRSHVALSHAECGAPVHVALRCDAGHDVPESEVVVTGRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXX8</accession>
    <name>A0A0Q8UXX8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_20315</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46609">
        <property type="protein sequence ID" value="KRC46609"/>
        <property type="gene ID" value="ASE19_20315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="5"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="87"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="16696" checksum="CB21E26FAF8CAB62" modified="2016-01-20" version="1">MADAGDRLLRFARMLVLDHGEAEDALQEALTRLARHWHRTVTPEAYARKILLNLARDRGRRRHLVARPTDAAPETTTGDHADAVAARKQLDMLLAGLPAKQRATVVLRIVEDRSEAETARLLGCAEGTVRSNLSRALASLRGRMGDLQETT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY81</accession>
    <name>A0A0Q8UY81_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_15615</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50047">
        <property type="protein sequence ID" value="KRC50047"/>
        <property type="gene ID" value="ASE19_15615"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="143"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="167"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="228"/>
            <end position="435"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC50047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="435" mass="45490" checksum="9A482428729BF7F7" modified="2016-01-20" version="1">MRRTSVRTRTTLAATAVVAVALVVAAVALVLTVRSSLHGAAETTAEHQASVIAEQVDAGRLPAPGEDDDEPDDLVWQVTDAEGRVVAASASLNGGSIPVVDGEEASLRGGEHSYLVVTEDTEADGVVAVAVSLEDVDETTAALGLPLLLGLPLLLLVVAGTTWLVVGRALRPVERIRAEVERISGSSLDRRVPEPAATDEVGRLARTMNAMLARLQDSRHRQEQFVADASHELRSPLASLRQAAEVAQAHPAAMPPGELTGTVLEETVRMQALVDQLLVLTRAGEGRARAPRMEVDLDDLALAEVRRIARPGLAVDGSGIAAGRVLGDPVALGQVVRNLVDNAARHARDRVAVSLSAAAGQVVLAVDDDGPGVPPGERQRVFERFVRLDEARARDAGGSGLGLAIVREVVTGHGGTVEVTDSVLGGARFVVRLPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY89</accession>
    <name>A0A0Q8UY89_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16690</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893707.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50238">
        <property type="protein sequence ID" value="KRC50238"/>
        <property type="gene ID" value="ASE19_16690"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1351747at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="1">
        <location>
            <begin position="16"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="316" mass="33423" checksum="8CA33258C4DE7D27" modified="2016-01-20" version="1">MQQRYVGASGLQVSRLALGTMTWGKDTDEHEARDQLTAFIEAGGTTIDTAAGYTDGRSEELIGSLLGDVVRRDEVVLATKAGISRRGGERVTDTSRGALLRGLDTSLRRLGTDHVDLWQVHIWSDDVPLEETLGALDFAVSSGRASYVGISNYNGWQTARAATLQEVAGRARLVSTQVEYSLVNRRIEREVLPAAESLGLGVLPWSPLGRGVLTGKYRTGTPSDSRAASPVFAGFVEAYLDDHSRGIVEAVARAADGLGWTPLEVALVWVRDSPGVTAPVVGARTAAQLKGALGSEAKTLPAEIRGALDDVSGGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYA4</accession>
    <name>A0A0Q8UYA4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16790</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893723.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50254">
        <property type="protein sequence ID" value="KRC50254"/>
        <property type="gene ID" value="ASE19_16790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2069312at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="62"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="127"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="150"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="180" mass="18622" checksum="FB49D447316496F3" modified="2016-01-20" version="1">MSDDELLDAEIAAVLGGTGRPDGDPTLTWLAASARTTPPPDLVARIGAGVRRRAQRDRPGRLLSVVALALAAVFVSQAIGNVVAGDWIAENIGEPNGPHAYFEGALALMAAAACAAAAAVRRSWAPVSVLSASPLAVSLGLHGVGEFGVFAAGAVLHTTEGVLGILLAWAWWRDRRRSRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYK2</accession>
    <name>A0A0Q8UYK2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15690</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50341">
        <property type="protein sequence ID" value="KRC50341"/>
        <property type="gene ID" value="ASE19_15690"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="5"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="422"/>
            <end position="500"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="518" mass="55863" checksum="F8A8D95347DEF4D5" modified="2016-01-20" version="1">MVAALKRHANRPIVHLGDVTLTGKETAERISQYIQAFESLGAGRGTPGALLALNRPEVLFILGAGQTQGFQRTSLHPLGSADDHAYVINDAGITTLVIDPYFAGRAVELLGKCPGLKQVLTIGPVPEELAEVGTDLTEVAATFEPQTLTAAVLEPDHITSITYTGGTTGKPKGVIGNVRAFSTMAQIQMAEWEWPAEPRFLMCTPLSHAGAAFFVPVVLQGGTLFVSARFDPADVLRTIEEKRINSLMLVPTMLYALMDHPDSHTRDLSSLETVYYGASAINPVRLKEAIERFGPIFAQYYGQSEAPMVISYFPKGDHVDADGTPVESRLTSCGRPSAYLRAALLDEAGNPVPQGEPGEICVAGPLLSAGYWQLPEATAETFRDGWMHTGDVAREDEDGFWYIVDRTKDMIVTGGFNVFPREVEDVIAEHPAIAQVGVIGTPHEKFGEAVTAVVVLREGHELTDEVVAEIQAAVKERKGSVQAPKDVIAVDALPLTALGKPDKKALRARFWTGERSVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYN5</accession>
    <name>A0A0Q8UYN5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20660</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0301 (AlgH) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896029.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46258">
        <property type="protein sequence ID" value="KRC46258"/>
        <property type="gene ID" value="ASE19_20660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1736059at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003774">
        <property type="entry name" value="UPF0301"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30327">
        <property type="entry name" value="PTHR30327"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02622">
        <property type="entry name" value="DUF179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="191" mass="20006" checksum="30CE1C253609382A" modified="2016-01-20" version="1">MSSAPGNSELAVGSLLLASPALLDPNFVDTVVLLLDVNDEGALGVVLNRPSALPVSEVLGDWGDVVDEPEVLFQGGPVSTDGALAVALAADDGEGAAGFRPLWGRLGLLDLDTPRELVEGTVDRLRIFAGYAGWGAGQLQAEVEEGSWYVVPGEVEDVFGGQGPDLRRRVLRRQPGDLALQATRPADPELN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYQ1</accession>
    <name>A0A0Q8UYQ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16615</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893692.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50223">
        <property type="protein sequence ID" value="KRC50223"/>
        <property type="gene ID" value="ASE19_16615"/>
    </dbReference>
    <dbReference type="OrthoDB" id="722986at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="598" mass="62778" checksum="42401F1927807623" modified="2016-01-20" version="1">MAAGTTLLFLHGVGSGDRGDDWQRVLGSTLTSLGYPGLDGVAVVAPKYPDVLRAAGTKAPLPPVTIDDLTGSAARTHRRAVERRIAALEARLGRHDTGAGWVGADQVVDLGMAIGPFTQAHNYLTRPRVRAQVLTKVLDRLPRSGRLVVVGHSLGSVVAADLVRRLPVGLEVAGMVTIGSPLGHERFDVDGLRKRLAAPPANLSWWANFWNELDPVTSHRGVSAVVPWLLDRRVRASALADPHASAGYLADTSVATAVGFALHGSLDHALAVPERGPDIALDPTETVALVALLHAHLVNDRLDGSRRQRHRDAIRTVQACAVEAAVARNRDHGVAVSQTVLDCHVDLLDPDSAPPRPRAMRHLSAEEAVVPLVFVATTNVIRPFEIAVPLDVRRAAMADLTSAMGLGSALGTDVHAALAEAHEVLGCGPSGWVARTALDMGTGALAAATGGLTFAAAPVGGAAAAVSALAPFEPDGILGELLSAAAFATSSSDALPEGLARARTSAETVLAVVETQLAAALLRQRRDLEQDPTTWRSLVLTGAEVRREQARLASVCDRSSDVLTQARRKLGAVDRAVRHLADEGLVPGPVTGWRGPRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZI4</accession>
    <name>A0A0Q8UZI4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20590</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896018.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46247">
        <property type="protein sequence ID" value="KRC46247"/>
        <property type="gene ID" value="ASE19_20590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1583204at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009936">
        <property type="entry name" value="DUF1468"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07331">
        <property type="entry name" value="TctB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="135"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="170" mass="17612" checksum="2ACC593AF2895499" modified="2016-01-20" version="1">MTATTEPGATALVDKAQYGLAAFLGLAGGYVLYDASTLDRAFNDQPVQPYALPYVVGAALLVLGVLLAVATARGDRPEAEEGEDVDLSQGTDLRTIGLLAAVLVANLLLIDWLGWAITGALLFTGATYTLGSRTWVRNLAIGAALSVGTWYGFYVGLGLPIPAGILDGVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0R9</accession>
    <name>A0A0Q8V0R9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Aspartate--tRNA(Asp/Asn) ligase</fullName>
            <ecNumber evidence="7">6.1.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Aspartyl-tRNA synthetase</fullName>
            <shortName evidence="7">AspRS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Non-discriminating aspartyl-tRNA synthetase</fullName>
            <shortName evidence="7">ND-AspRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">aspS</name>
        <name evidence="10" type="ORF">ASE19_19150</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + L-aspartate + tRNA(Asx) = AMP + diphosphate + L-aspartyl-tRNA(Asx)</text>
            <dbReference type="Rhea" id="RHEA:18349"/>
            <dbReference type="Rhea" id="RHEA-COMP:9710"/>
            <dbReference type="Rhea" id="RHEA-COMP:9711"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78516"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.23"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.23" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893413.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49011">
        <property type="protein sequence ID" value="KRC49011"/>
        <property type="gene ID" value="ASE19_19150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="226836at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004815">
        <property type="term" value="F:aspartate-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050560">
        <property type="term" value="F:aspartate-tRNA(Asn) ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006422">
        <property type="term" value="P:aspartyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00044">
        <property type="entry name" value="Asp_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004364">
        <property type="entry name" value="Aa-tRNA-synt_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004524">
        <property type="entry name" value="Asp-tRNA-ligase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002312">
        <property type="entry name" value="Asp/Asn-tRNA-synth_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004115">
        <property type="entry name" value="GAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029351">
        <property type="entry name" value="GAD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22594:SF5">
        <property type="entry name" value="PTHR22594:SF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02938">
        <property type="entry name" value="GAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00152">
        <property type="entry name" value="tRNA-synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01042">
        <property type="entry name" value="TRNASYNTHASP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55261">
        <property type="entry name" value="SSF55261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00459">
        <property type="entry name" value="aspS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="9">
        <location>
            <begin position="136"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="region of interest" description="Aspartate" evidence="7">
        <location>
            <begin position="193"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="561"/>
            <end position="588"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="574"/>
            <end position="588"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="215"/>
            <end position="217"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="215"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="224"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="447"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="479"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="486"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="531"/>
            <end position="534"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for tRNA non-discrimination" evidence="7">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <feature type="site" description="Important for tRNA non-discrimination" evidence="7">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC49011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="588" mass="64001" checksum="A914D9E27C7A49DF" modified="2016-01-20" version="1">MIRNKDAGALRAEHVGQTVTLAGWVANRRDHGGVAFIDLRDASGVVQVVIRDEDVAHSLRSEYCLKITGEVVGRGEGRENPNLPTGAIEVVAADVEVLSAAAPLPFPISDHVDVGEEVRLKHRYLDLRRTAPGNAIRLRSNVNKAARSVLDAHDFVEIETPTLTRSTPEGARDFLVPARLQPGSWYALPQSPQLFKQLLMVAGMERYYQIARCYRDEDFRADRQPEFTQLDIEMSFVTQDDVIALGEEIVAALWKLIGYDVELPLQRMTYADAMARYGSDKPDLRMGLELVECTDYFKDTPFRVFQSPYVGAVVMPGGASQPRKQLDAWQEWAKQRGAKGLAYVLVQEDGELGGPVAKNITDEEKAGLAAHVGAKPGDCIFFAAGAVKSSRALLGAARLEIGRRTGLLDEDAWSFLWVVDAPLFEPADEATAAGDVAVGGGAWTAVHHAFTSPQDLDTFDSDPGGSLAWAYDIVCNGNEIGGGSIRIHREDIQKRVFEVMGISQDEAEEKFGFLLEAFKYGAPPHGGIAFGWDRVVALLAGTDSIRDVIAFPKTGGGYDPLTAAPAAITPEQRKEAGVDARPEDETKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V217</accession>
    <name>A0A0Q8V217_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protoporphyrinogen oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15305</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917978.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51448">
        <property type="protein sequence ID" value="KRC51448"/>
        <property type="gene ID" value="ASE19_15305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="630753at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="11"/>
            <end position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="450" mass="46218" checksum="9B1AABCF095DF9A1" modified="2016-01-20" version="1">MRRAIVVGAGVAGLVAARDLAEAGATVLVLESSDRTGGKLRSGSVAGVTVDVGAEAMLHRRPEGTALATSLGLPLVHPTGATSRVWTRGALRPLPRTLMGAPLDLGQLEASGILSPEGMVRARHQFAAHLDGEGHDESVAHLVGTRFGDEVVDRLVEPLLGGVYAGQARHISVRSAVPQLVDLIARPEFTLPPPPAGAPPVFASVDGGMWRLPAVLEADLAGRSGVEVRYDATVTAVRRTGSGFVVTTPAGEEPADLLVLATPAAPTSRLLADLAPDAADELAQIGYASVALVTFAFRADDPGVAEALEIGASGFLVPPVDGRRVKASTFSFAKWDWVRAAGDGLLVLRTSLGRFGEEATLQVPDDELVRASLADLAAATGLRAAPVDAVVQRWGGGLPQYWVGHADRVARIRSAVAAVPGLAVCGASYDGVGIPATIASAHAATAALLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V243</accession>
    <name>A0A0Q8V243_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 9">Gluconokinase</fullName>
            <ecNumber evidence="4 9">2.7.1.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_15105</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + D-gluconate = 6-phospho-D-gluconate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19433"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18391"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58759"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.12"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate acid metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the gluconokinase GntK/GntV family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.12" evidence="4 9"/>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51412">
        <property type="protein sequence ID" value="KRC51412"/>
        <property type="gene ID" value="ASE19_15105"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00705"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046316">
        <property type="term" value="F:gluconokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02021">
        <property type="entry name" value="GntK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031322">
        <property type="entry name" value="Shikimate/glucono_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006001">
        <property type="entry name" value="Therm_gnt_kin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43442">
        <property type="entry name" value="PTHR43442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01202">
        <property type="entry name" value="SKI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01313">
        <property type="entry name" value="therm_gnt_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="6 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC51412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="177" mass="19026" checksum="014FC9C73FDC9E88" modified="2016-01-20" version="1">MSSTLPYDGGAPLLVVMGVSGSGKSTVGAALAQRLGVPFEDADDLHPAANIAKMTAGIPLDDEDRIPWLETIGRWLAANDEQGGVISCSALKRSYRDQLRAHAARAVFVHLHGTREVIARRQAARPGHFMPASLLDSQFDTLEPLAEDEVGLVIDVDQPVDVIVQQFVDSPYVGRQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V247</accession>
    <name>A0A0Q8V247_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">50S ribosomal subunit assembly factor BipA</fullName>
            <ecNumber evidence="2">3.6.5.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">GTP-binding protein BipA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">bipA</name>
        <name evidence="4" type="ORF">ASE19_14870</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">A 50S ribosomal subunit assembly protein with GTPase activity, required for 50S subunit assembly at low temperatures, may also play a role in translation. Binds GTP and analogs. Binds the 70S ribosome between the 30S and 50S subunits, in a similar position as ribosome-bound EF-G; it contacts a number of ribosomal proteins, both rRNAs and the A-site tRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>GTP + H2O = GDP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="2">Binds to ribosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. BipA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.-" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896442.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51375">
        <property type="protein sequence ID" value="KRC51375"/>
        <property type="gene ID" value="ASE19_14870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="143460at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000027">
        <property type="term" value="P:ribosomal large subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03710">
        <property type="entry name" value="BipA_TypA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.250">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00849">
        <property type="entry name" value="BipA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035651">
        <property type="entry name" value="BipA_V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042116">
        <property type="entry name" value="TypA/BipA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006298">
        <property type="entry name" value="TypA_GTP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42908:SF8">
        <property type="entry name" value="PTHR42908:SF8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01394">
        <property type="entry name" value="TypA_BipA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="2" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Tr-type G" evidence="3">
        <location>
            <begin position="7"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="19"/>
            <end position="24"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="144"/>
            <end position="147"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC51375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="634" mass="69158" checksum="FB6D87D379F468C8" modified="2016-01-20" version="1">MSQTRRTDLRNVAIVAHVDHGKTTLVDAMLHQAGAFSAHQAEGVAERVMDSGDLEREKGITILAKNTAVHYRGPSAQELADGDMVINIIDTPGHADFGGEVERGLSMVDGIVLLVDASEGPLPQTRFVLRKALNADMPVILVVNKTDRSDARIDEVVDETYELFMDLLDDSHSQDALDFPVVFASGKAGIASLTKPANGTLPEGTDLEPLFRTILETIPAPEYDDEAPLQAHVTNLDASPFLGRLALLRIKQGNLKKGQTVAWINRDGVVKNVKVTELLITEGLERKPGESAGPGDIVAVAGIPDITIGETLADAENPVALPLIHVDEPAISMTIGTNTSPLVGKGGKGHKVTARLVKDRLDSELIGNVSLRVLPTERPDAWEVQGRGELALAILVEQMRREGYELTVGKPQVVTREIDGKLHEPFERLTIDAPEEFLGTITELLANRKGRMEGMTNHGTGWVRMEFVVPARGLIGFRTDFLTETRGTGIAHSISEGYFPFAGEIRSRQSGSLVADRSGAATAYAMTSLQERGTMFVDPATEVYEGMIVGENSRADDMDVNITKEKQQTNIRSATSDNFEKLIPPRKLSLEQCLEFCREDECVEITPETVRIRKVVLDQNERAKMASRARKGTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V280</accession>
    <name>A0A0Q8V280_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">SfnB family sulfur acquisition oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_15285</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896510.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51444">
        <property type="protein sequence ID" value="KRC51444"/>
        <property type="gene ID" value="ASE19_15285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013107">
        <property type="entry name" value="Acyl-CoA_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023922">
        <property type="entry name" value="S04_starv_induced_SfnB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08028">
        <property type="entry name" value="Acyl-CoA_dh_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04022">
        <property type="entry name" value="sulfur_SfnB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="3">
        <location>
            <begin position="21"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="2">
        <location>
            <begin position="132"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_2" evidence="4">
        <location>
            <begin position="242"/>
            <end position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC51444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="403" mass="42392" checksum="97C3E901C1B362D8" modified="2016-01-20" version="1">MTVAAPPRHSADSAIAAAADLAARFAEDSALRDRERILPVAEVEALSASGLLAITVPTEYGGPGLGAAVLTEVVRLVATGDPNVAQIPHSHFVYVNALVEQGTEEQKRFLLGEVVAGRRFGNAQSEIGSKHVRDHATTLRPDPAAPGAWVLDGEKGYATGALLAHWIPVLAHLGEGGPLSVAWVERDAPGVTVVDDWDGLGQRTTASGTVRLERVRVAADRVTPYHLTFERPQAYGSFAQLLHAAIDAGIARAAVRDAAAFVTTRSRPYPDALALYDTSGAAGDPLVVQAFGEVELQVRAAEALLAEAGRAVDRARASLTAATAAEASLAVAAARASTTAASLEASSRLFEVAGTRSALRSHDLDRHWRNARTHTLHDPAAWKVHHLGRHAIDGTPPPNHGQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2Y4</accession>
    <name>A0A0Q8V2Y4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">D-3-phosphoglycerate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_17120</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893782.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50313">
        <property type="protein sequence ID" value="KRC50313"/>
        <property type="gene ID" value="ASE19_17120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1638924at2"/>
    <dbReference type="UniPathway" id="UPA00392"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029752">
        <property type="entry name" value="D-isomer_DH_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00065">
        <property type="entry name" value="D_2_HYDROXYACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2-Hacid_dh" evidence="4">
        <location>
            <begin position="4"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="domain" description="2-Hacid_dh_C" evidence="5">
        <location>
            <begin position="107"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00029440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="397" mass="42220" checksum="08F01ABA9B45BD8E" modified="2016-01-20" version="1">MKALLLENIHPAAVEYLEGRGYDVDLRAGSLSEEELLAELPGVQLLGIRSNTTVTARALDAAPDLLAVGCFCIGTNQVDLAAAAERGIGVFNAPYSNTRSVVELVIAEIISLARRLPEKTERMHEGVWDKSAKGSHEVRGRTLGIVGYGNIGTQLSTVAEALGMKVVFYDAADRPAHGTARRVRTLGELLAEADVVSLHVDGRPGNAGFFGAAEFAQMKRRAMFINASRGMVVDYDALRENLLSGHIAGAAVDVFPAEPKAQGDPFTSVLRGLDNVILTPHIGGSTQEAQEEIGGFVAEKLARFALEGSTALSVNLPDVLPGPYTPGHRIGFLHHNVPGVLASLNAAFSDAGDNVVGQHLSTRGSLGYVVTDAAEPLSEQAMQTLRASEHCVWVRTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3Y9</accession>
    <name>A0A0Q8V3Y9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1801 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18105</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893234.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48833">
        <property type="protein sequence ID" value="KRC48833"/>
        <property type="gene ID" value="ASE19_18105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1278667at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014922">
        <property type="entry name" value="DUF1801"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08818">
        <property type="entry name" value="DUF1801"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1801" evidence="1">
        <location>
            <begin position="8"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="113" mass="12153" checksum="71EF3A684A0FCA17" modified="2016-01-20" version="1">MSNDWRSDLVDRVRSLIVEAEPAVVEEAKWKKASNPDGVPTFSADGLICTVETYKDKVKLTFAKGASLADPTGLFNASLDAGTRRAIDVFEGEELDGDALVALVREAVALNRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V413</accession>
    <name>A0A0Q8V413_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Urea ABC transporter permease subunit UrtC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_16465</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893664.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50195">
        <property type="protein sequence ID" value="KRC50195"/>
        <property type="gene ID" value="ASE19_16465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1425262at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017778">
        <property type="entry name" value="ABC_transptr_urea_perm_UrtC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482:SF4">
        <property type="entry name" value="PTHR30482:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03408">
        <property type="entry name" value="urea_trans_UrtC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="44"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="118"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="148"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="173"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="197"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="247"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="283"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="321"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC50195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="360" mass="38401" checksum="73E8F6E10CD3C10E" modified="2016-01-20" version="1">MNRLLPLARTWGPLIGIALVAIALLVVAPAVLSPFRLNNLGKYVCWAIAGVGIGLAWGRGGMLVMGQGVFFGLGGYAMAMHLKLEAAMATGGPDAIPDFMVLYGDGTMPGWWEPFRSGAFTLFAIVALPAVAATILGWAIFKRRVKGAYFAILTQALAVAFATLLIATIKQTGGFNGLNQFTLFFGYNLYDPVNKKMIYSIAAAVLVVCLVVVWQLYRSRFGELLVATRDAEERVRFLGHDPANIKLVAFIVAAIMASIGGALFAPITGIISPSDVDATASIFLIAGVALGGRALLLGPALGALAVGYGRTALSESFPDQWTYFLGLLFIVVILFFPSGLGNAWSQVTQRLRPQHQEATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V461</accession>
    <name>A0A0Q8V461_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cholesterol oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_16715</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893712.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50243">
        <property type="protein sequence ID" value="KRC50243"/>
        <property type="gene ID" value="ASE19_16715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="365211at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rhodanese" evidence="3">
        <location>
            <begin position="6"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="225"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="520"/>
            <end position="551"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="565" mass="61105" checksum="027FFA76266EE23A" modified="2016-01-20" version="1">MTHYDVLVIGSGFGGSVTALRLSEKGYEVGVLEAGRRFADDELPTSSWKVRDYVFNPALGCYGLLRMTLLKDVLVLTGAGVGGGSLVYANTLYEPPKAFFEDAHWAGITDWADELAPYYDQARRMLGVTPYPWMSPSDHVMKSVADGLGVGETFGPTDVGVLFGERPGERVADPFFGGVGPARTTCTDCGACMTGCRVGAKNTTVKNYLHLAERAGAVVHPMTTVTDVRPRPGGGYDVTTRRTQGKARRGRRTFTADQVVFSAASLGTQRLLHRLRDGGSLPRISPRLGELTRTNSEAILGVRARGDEVDYSRGVAITSSIHVDDHTHVEPVRYGRGSNLLGLLMASLTDAPDDGRSRLVAGLHEMWRHRRDLPHLHDPRHWSEQTIVLLVMQSLDNSLTTYLRRRPWGRTLTTRQGTGEANPVWIPQGHEVARRVGEEIDGIPGGTWADLVNIPATGHLIGGCPIGETAADGVIDPYHRLHGYDGLHVIDGSAVAANLGVNPSLTITAMSERAVAMWPNKGEPDQRPVTGSGYRRIGPTAPRSPMVPPTAPAAYRLPVVAPSDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V568</accession>
    <name>A0A0Q8V568_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Nitrile hydratase subunit beta</fullName>
            <shortName evidence="5">NHase</shortName>
            <ecNumber evidence="5">4.2.1.84</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_09140</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 5">NHase catalyzes the hydration of various nitrile compounds to the corresponding amides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>an aliphatic amide = a nitrile + H2O</text>
            <dbReference type="Rhea" id="RHEA:12673"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18379"/>
            <dbReference type="ChEBI" id="CHEBI:65285"/>
            <dbReference type="EC" id="4.2.1.84"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the nitrile hydratase subunit beta family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.84" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894534.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52597">
        <property type="protein sequence ID" value="KRC52597"/>
        <property type="gene ID" value="ASE19_09140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1379595at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080109">
        <property type="term" value="F:indole-3-acetonitrile nitrile hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042262">
        <property type="entry name" value="CN_hydtase_beta_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024690">
        <property type="entry name" value="CN_hydtase_beta_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008990">
        <property type="entry name" value="Elect_transpt_acc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003168">
        <property type="entry name" value="Nitrile_hydratase_bsu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02211">
        <property type="entry name" value="NHase_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001427">
        <property type="entry name" value="NHase_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50090">
        <property type="entry name" value="SSF50090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03888">
        <property type="entry name" value="nitrile_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NHase_beta" evidence="6">
        <location>
            <begin position="1"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001410"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR001427"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="236" mass="26266" checksum="F6F977AD143703E9" modified="2016-01-20" version="1">MNGVFDLAGTDGIGPVVVPDEEPVFRADWERAVFPMFAMCFRAGFFGVDQFRHGIELIDPAVYLKSPYYEHWVHTVEHFGEQLGKLDMAELDRRTAHYLANPDAPLPEHADDPELLAFVEAVVPSGATAKRDVERAARFRVGDVVRVDRSAPKGHTRRARYVRGAVGEIVLAHGVFIYPDTAGNGLGEQPEHVYTVKFSAEELWGAEHAEPNQSVYFDVWDPYLDLVTTSTEGVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V577</accession>
    <name>A0A0Q8V577_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Succinate-semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09185</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894542.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52604">
        <property type="protein sequence ID" value="KRC52604"/>
        <property type="gene ID" value="ASE19_09185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="384611at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="2">
        <location>
            <begin position="3"/>
            <end position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="446" mass="46821" checksum="A56EC1B22D9FCF5A" modified="2016-01-20" version="1">MSKYAVRNPATGQVVETFPSATDEEVAAAVASAASAYAEWGRTSTVAERAALVRRVAELHRERAGELAKAINEEMGKALGAAEGEVLFSADIYQYYSDRAEQFLADQEIELLGGSGRALLRRQPVGALLGIMPWNYPVYQVARFAAPNLVTGNTIVLKHAAQCPRSAALQAAIFRDAGLPEGAFVNVYATNDQIADVIADPRIQGVSLTGSERAGSIVGEIAGRHLKKCVLELGGADPFVLLSTDDLDAAVDDALSARTGNVGQACNGAKRFVVVDELYDDFVAALHQRVSAAAVAAPLSSLAAAEGLAAQVDAAVAAGAHLVASGERDGAFHPVGVLTDVAPDNPAYHQEFFGPVAMVFRASDEADAIRIANDTPYGLGSYVYTTDPEQADRVASALEVGMVFVNGVGLEAVELPFGGVRLSGYGRELGSLGIEEFVNKKMIRIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5A2</accession>
    <name>A0A0Q8V5A2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peripla_BP_4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18475</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893299.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48898">
        <property type="protein sequence ID" value="KRC48898"/>
        <property type="gene ID" value="ASE19_18475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1378040at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025997">
        <property type="entry name" value="SBP_2_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13407">
        <property type="entry name" value="Peripla_BP_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359712" description="Peripla_BP_4 domain-containing protein" evidence="1">
        <location>
            <begin position="21"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_4" evidence="2">
        <location>
            <begin position="52"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="33219" checksum="46F03F766DBA04FA" modified="2016-01-20" version="1">MNYRNTLCSAAAAVALLSTAACSGGSSTDDGGDDTFSVGIVRFAPSEVTTEGAIKEYVKLAEAAGWEVTTANPDAAVDKAIGAMQDFVQKKVDLIVVGSFDSTTLTSGLRSATEAGIPVASIAGGIADGVTYNLGVANGIEIPDQMIEDMGGEGRSLVLSYTPGPPCQIREKALDEALEDTGITADRQEVTIPGQLESSQRLTTAWLAKNPADGEPLSVWACWDDPALGAYVAIEQAKRTDVKIYGYNGTPAGLRALKEGKIRATSAPDLAAAAKLLFDATPSLVEGGADAEPQDVETPYNLVTSDTIDEYLVAHPGADGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V674</accession>
    <name>A0A0Q8V674_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">T2SSE_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10735</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894810.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52878">
        <property type="protein sequence ID" value="KRC52878"/>
        <property type="gene ID" value="ASE19_10735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="724641at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007831">
        <property type="entry name" value="T2SS_GspE_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05157">
        <property type="entry name" value="T2SSE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="142"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="418"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="455"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="487"/>
            <end position="514"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSE_N" evidence="2">
        <location>
            <begin position="9"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="523" mass="54731" checksum="B35F69387D13B24B" modified="2016-01-20" version="1">MDPDGSRLDAAAEHLQLPARDLVASPPEDYLLAEVDPELVVELGWVACELTVDGRLVVATSVPAVEELLAEVEERFPGRRIEFVACTRRDLDAVALAALRLRQPRGAAQPPPADLVRPLHYALVAVLGAAALVAAFFVPLEVLAVVVLCFALVFLLGAASQSVGSYSGLTPVVAAGEGDGDDTLLPAYTVLLPAADEASVRDALADLGRLDYPPDRLDALLLVPADDATTAAGVRRAAPPEWVRVVPVPAERYDDPVASLDHGLALARGRYVVAFAADERPAADQLRRAVAAFEADLDAGLSAGPGAVPLVGLRAARRADAAGRSGFARMTAVDEALDLGGLTEERVPTSTHFNMRLLRRHGGFALASSDLPAGVRIEPFDSISVRAADPGPIRWTHDRAEAWVRAVRRARATGHPVVVREVLIPLTFLAYPVAVVGALVAAVRGTGADGALAQQIAWLGMGEAAIVLGGAVVVAAVAVARRRGRVAALYALALPAHWLLHAVAAWVAVAALVVRTASPRRAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6D7</accession>
    <name>A0A0Q8V6D7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10475</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52827">
        <property type="protein sequence ID" value="KRC52827"/>
        <property type="gene ID" value="ASE19_10475"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="132" mass="14538" checksum="816FE32F106DE109" modified="2016-01-20" version="1">MDTVNTWTAAILGVAVVVATGVATLRWLVTTLTRQMRTIAQEVVTDAVGASEQRLSARLVAMDVRFDAMDGRFDAMDGRFDAMDGRFDALDRRFDALDDKVHHGTEMTDLRLSHLEADMTLVKQHLLGSTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6E3</accession>
    <name>A0A0Q8V6E3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_15525</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893498.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50029">
        <property type="protein sequence ID" value="KRC50029"/>
        <property type="gene ID" value="ASE19_15525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041490">
        <property type="entry name" value="KstR2_TetR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17932">
        <property type="entry name" value="TetR_C_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="5">
        <location>
            <begin position="12"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="207" mass="23166" checksum="5542D81364980405" modified="2016-01-20" version="1">MSAASTPEGGTPSRREQLLAIAAEQFAEKGFRNTTVRDIADAAGILSGSLYHHFDSKESMVDEILIPFQEELFGKYDEILASGDDARTKLERAVRVSFEAIDQHPHEVAIFQNDADHLGSFERFGYLADRNAQSRQVWVSLLEEGVRAGVLRADLDVTLTYRFIRDTVWVAVRWYRPGRGLSHTTVADQYVRILLDGIAIDEGKSHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6J9</accession>
    <name>A0A0Q8V6J9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11155</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894887.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52954">
        <property type="protein sequence ID" value="KRC52954"/>
        <property type="gene ID" value="ASE19_11155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="849092at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="450" mass="45872" checksum="D1347281BFC8FC9D" modified="2016-01-20" version="1">MTAPQAEEPLSAVQAADLADKYDQMLRLADLFDDAGAQMREWAKLGRDVLTDPEVVASTPLSPTTWATAEEELRAATTGKDGLLSRSIELDADALVLRATVLTYRWIDELQAAAYETLGSIAGKAIGYLAPQVSLGGAIVAAGLIETDALDRDGVAAYLNELAEANPELMEHVTTGGGLLDSLQMRGLLTAGVLSGESGRPARAGGLRAAGVVPLGDDWGAALRDVAVDLPDDAASATPPVGGDVSDAAEAPSGLADLMTLLAGSDDTEPVRIHRVGPGRLLAFLSGGAAPTPSAGRLRLVAGGDSSGHATAVVEALAAAAATEDGEARVMLVGRGSGGAAAIEIATRRDLPGFVVDQVVTASAPSAQLPVLPADVQVLSLEDRSDPVALLGSLINAATANRLTVVYDAGTDPDVPALVAGGRAADRADHPDLVAALDRWRAQGFLRSTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6L0</accession>
    <name>A0A0Q8V6L0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LLM class F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10600</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894785.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52852">
        <property type="protein sequence ID" value="KRC52852"/>
        <property type="gene ID" value="ASE19_10600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019921">
        <property type="entry name" value="Lucif-like_OxRdtase_Rv2161c"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03619">
        <property type="entry name" value="F420_Rv2161c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="11"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="297" mass="32934" checksum="777C67AC873941A0" modified="2016-01-20" version="1">MRFSFAEGMTQASYYAPLAQACEAAGYTSMTIADSLIYPQESDSKYPYTDTGDREFLLGKEFIETFILCAHLFAVTEKIRLTPFVLKLPIRPPVLVAKQASSLAFLSGNRLGLGVGLSPWPEDFAALGVAWEKRGKRMDECMDILRGLTQPGDEPTFFGYQGEFFDIEPLQQCPAPTEKIPLLVGGHSDAALRRAVRKGDGWMHAGGDGEELDRLLTRLAEIRAEEGDTRGPDEFEVHVISYDAYTVDGVKRLEDKGVTDCIVGFRVPYIKGPDTEPLETKVKHLEQYAENIIAKVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6M4</accession>
    <name>A0A0Q8V6M4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_16800</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893725.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50256">
        <property type="protein sequence ID" value="KRC50256"/>
        <property type="gene ID" value="ASE19_16800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0274">FAD</keyword>
    <keyword evidence="2 4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="135"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="247"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="59"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC50256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="406" mass="43555" checksum="5A4798BB728A511C" modified="2016-01-20" version="1">MAINLEVPKKHRALVDQAHQVAMNMLRPISRKYDIAEHEYPKELDMLAAMIDGLSESGASEGAGATGVRRDADDGDKKGAVKNGANLASVTSVAEMCWGDTGLLLSMPRQGLGNSAIASVANDEQLERFKGRWASMAITEPSFGSDSAAISTTAVLDGDEYVINGEKIFVTSGERSDCIVVWATLDKSLGRAAIKSFVVEKGTEGVKVERLEEKLGIRASDTAVITFTNARVPKENLLGSPEINVEQGFAGAMATFDNTRPLVAAMAVGCARASLDLTRDLLKEAGIEVDYDKPAILQSAAAAKFLQLESDWEAGRLLTLQAAWMADNRKPNSLEASMAKAKAGRVGSDVTLSCVELCASVGYSEEELLEKWARDSKILDIFEGTQQIQQLIVARRILGLSSAELK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V717</accession>
    <name>A0A0Q8V717_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">Elongation factor Tu</fullName>
            <shortName evidence="7">EF-Tu</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tuf</name>
        <name evidence="9" type="ORF">ASE19_11545</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894949.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53019">
        <property type="protein sequence ID" value="KRC53019"/>
        <property type="gene ID" value="ASE19_11545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="621774at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01884">
        <property type="entry name" value="EF_Tu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03697">
        <property type="entry name" value="EFTU_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00118_B">
        <property type="entry name" value="EF_Tu_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041709">
        <property type="entry name" value="EF-Tu_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033720">
        <property type="entry name" value="EFTU_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004541">
        <property type="entry name" value="Transl_elong_EFTu/EF1A_bac/org"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004160">
        <property type="entry name" value="Transl_elong_EFTu/EF1A_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03143">
        <property type="entry name" value="GTP_EFTU_D3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="SSF50465"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00485">
        <property type="entry name" value="EF-Tu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 7 9" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="5 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="8">
        <location>
            <begin position="10"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="19"/>
            <end position="26"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="83"/>
            <end position="87"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="138"/>
            <end position="141"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="395" mass="42118" checksum="0965F38963938C82" modified="2016-01-20" version="1">MAKSQFVRTKPHLNIGTMGHVDHGKTTLTAAITKVLADADPTQNTFVAFDGIDRAPEEVQRGITINIAHVEYETATRHYAHVDMPGHADYVKNMITGAAQVDAAILVVSAQDGAMPQTREHVLLAQRVGVPYLVVAINKSDAVEDDELLDLVELEVRDLLGEYGFPGDELPVVRVSALKALEGDPRWTQSIADLLQAVDDYVPVPERELGEPFLMPIENVLTISGRGTVVTGAVERGSLRVGDAVEVVGLGPTVASVATGLETFGKTLDEVRAGDNAAVLLRGIRREDVRRGQVLVVPGSVRPHARFTANLHALSTAEGGRHTPFAADYRPQFYFRTTDVSGGIDLGDVELVLPGDTVEVTVELGKAVAMEAGLGFAVREGGRTVAAGTVTGLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7K7</accession>
    <name>A0A0Q8V7K7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acetyl-CoA carboxylase carboxyltransferase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13020</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895736.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53274">
        <property type="protein sequence ID" value="KRC53274"/>
        <property type="gene ID" value="ASE19_13020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="123223at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034733">
        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011763">
        <property type="entry name" value="COA_CT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011762">
        <property type="entry name" value="COA_CT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045190">
        <property type="entry name" value="MCCB/AccD1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22855">
        <property type="entry name" value="PTHR22855"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01039">
        <property type="entry name" value="Carboxyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50989">
        <property type="entry name" value="COA_CT_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50980">
        <property type="entry name" value="COA_CT_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CoA carboxyltransferase N-terminal" evidence="1">
        <location>
            <begin position="18"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="CoA carboxyltransferase C-terminal" evidence="2">
        <location>
            <begin position="271"/>
            <end position="533"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="533" mass="57693" checksum="D963C0411ABDE81E" modified="2016-01-20" version="1">MTTTETEQTPEQLRRTAMQAKLEALHAEQTKAVEAGGKYIARHHERGKLTARERIELLVDEGSAFLELMPLAGWGSDFAVGASLVTGIGVVEGVECMIVANDPTVKGGALNPWSLKKSFRAAEIAEKNFLPSINLTESGGADLPTQKEIFIPGGRGFRDLTRSSARKQPTISVVFGNSTAGGAYVPGMSDYVIMVKEQAKVFLAGPPLVKMATGEESDDETLGGAEMHSRVSGSSDYLAVDEHDAIRLARRAVARLNWRKKGDVPTVDYAEPDLDPEDLLELIPTDLKEPFDPREAILRIVDGTSDTNGQPFDEFKPLYGSALCVGWAQIHGHPVGILANARGVLMSEEAQKAAQFIQLANQKDTPLLFLHNTTGYMVGAEYEQGGIIKHGAMMINAVSNSKVPHLTVIMGASYGAGNYGMNGRAYDPRFLFTWPSAKSSVMGPAQLAGVLEIVARESAEKKGEVFDADGFKGIKEMVEQQIEEQSLPYVLSGMVYDDGVIDPRDTRTVLGICLSVIDNQPIEGAMNFGVFRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8K4</accession>
    <name>A0A0Q8V8K4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 8">DNA replication and repair protein RecF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">recF</name>
        <name evidence="10" type="ORF">ASE19_14045</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7 8">The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the RecF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897048.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53455">
        <property type="protein sequence ID" value="KRC53455"/>
        <property type="gene ID" value="ASE19_14045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="891841at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1050.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00365">
        <property type="entry name" value="RecF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001238">
        <property type="entry name" value="DNA-binding_RecF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018078">
        <property type="entry name" value="DNA-binding_RecF_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003395">
        <property type="entry name" value="RecF/RecN/SMC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042174">
        <property type="entry name" value="RecF_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32182:SF0">
        <property type="entry name" value="PTHR32182:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02463">
        <property type="entry name" value="SMC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00611">
        <property type="entry name" value="recf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00617">
        <property type="entry name" value="RECF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00618">
        <property type="entry name" value="RECF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="7 8" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="SMC_N" evidence="9">
        <location>
            <begin position="3"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="30"/>
            <end position="37"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="375" mass="40678" checksum="6F52639850F9F3EE" modified="2016-01-20" version="1">MHVAHLSLHDFRSYADVDVALEPGVTSFVGSNGQGKTNLVEAIDYLSRLSSHRVANDAPLIRAGTEQAIVRAAVVRDGRTAILEVELNPGRANRARINRSPLSRARDLAGLVRTVVFSPEDLALVKGDPSQRRRFLDDLLVLRTPRYAGVIADHERVLKQRNTLLKTLYAARGSSREAALATLSVWDDQLVTTGTELLTARQRLTTDLAPYLGKAYEAVARGANRDDARIEYAATVPDGDDTAAAFREELARRQADEIQRGVTLVGPHRDDLVLTLGPGDENRLPVKGYASHGESWSFALALRLASYDLLRADGDDPILILDDVFAELDADRREQLAALVAGAEQVLVTAAVAADVPEALRGTTFHVAAGEVTRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V974</accession>
    <name>A0A0Q8V974_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_14495</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897135.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53691">
        <property type="protein sequence ID" value="KRC53691"/>
        <property type="gene ID" value="ASE19_14495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1345431at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="71"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="96"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="140"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="162"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="207"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="235"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="274"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="367"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="1"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="393" mass="38979" checksum="155B830DC31B9573" modified="2016-01-20" version="1">MLAVGTTGQASSAAMVTAPSFLIPELHRPVAEGGHGMALAEAGLVASAAMAGMMATLVLWGVVVDRRGERFALLAGLLIATTGGVVATATGEPWPMAAALCFAGVGAAATNSASGRVVVGWFPPEQRGLAMGIRQTGQPLGVGLAAGTVAAIAHGHGIGPALWVPTVATALSAALVALVVIDPPRPPRAEAAAVTNPYRADSFLTRVHGASVLLVVPQFLVWTFGLTWLVEDLGWAPGVAGLVVAGTQVAGAAARIGAGWASDRVGSRMRPMRAVAVLAAGTMALLGLAAGLAGPDNPVVTGAAVLLLVVASAVTVADNGLAFTAVAERAGPFWSGRALGLQNTAQHVAAVAVPPLAGLAISAGSYGATFALAAVFPLVAVLVVPVRDERGVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9P6</accession>
    <name>A0A0Q8V9P6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07850</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895411.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53980">
        <property type="protein sequence ID" value="KRC53980"/>
        <property type="gene ID" value="ASE19_07850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1622507at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.115.10.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023296">
        <property type="entry name" value="Glyco_hydro_beta-prop_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75005">
        <property type="entry name" value="SSF75005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="297" mass="31676" checksum="B3484BF24B751116" modified="2016-01-20" version="1">MTLAALSVPTYDDARVVVPAPAAGAGNWAGAASAVLVDGTYWLTYRVRRPLAEGRGVSVVVASSSDGEHFTTVAEVHREAFGCESFERPVLVPVPGVGWRLYLSCATPGSKHWWVDSLTAATPAELPGGERRVVLPGDDAVAVKDPVVVRVDGGWEMLLCCHPLTETGHEDRMTSRLLRSADGLSWTDEGEVLAGRPGEWDARGARATTVLPDVAGRPRTILYDGRPDADSNWFETTGVAAWDGARYVAVAGPPISSPHGDGAWRYASAVPLPDGRVRFYVEAARPDGAHDLVTVVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9W8</accession>
    <name>A0A0Q8V9W8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Extradiol ring-cleavage dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_15435</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DODA-type extradiol aromatic ring-opening dioxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896533.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51469">
        <property type="protein sequence ID" value="KRC51469"/>
        <property type="gene ID" value="ASE19_15435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1728007at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008198">
        <property type="term" value="F:ferrous iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016701">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006725">
        <property type="term" value="P:cellular aromatic compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07363">
        <property type="entry name" value="45_DOPA_Dioxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014436">
        <property type="entry name" value="Extradiol_dOase_DODA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004183">
        <property type="entry name" value="Xdiol_dOase_suB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02900">
        <property type="entry name" value="LigB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006157">
        <property type="entry name" value="Doxgns_DODA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="LigB" evidence="5">
        <location>
            <begin position="29"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC51469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="28401" checksum="B5955C78BEB133CC" modified="2016-01-20" version="1">MTDTLDRMPALYIGHGAPPLLDDPLWSSQLASWAQDLPRPKAILIVSAHWESAPLSLSASTAPLVYDFGGFAPRYYQMTYETPDASAFAAQVAAIMPRTEPVHQHTSRGLDHGAWVPLKIMYPDADIPVLQMSLPTHDPGRLMEIGRRLRPLRDEGVLIIGSGFLTHGLPFLTSWQIDADAPGWSKDFDAWAGEAMARGDVDELASFRDKAPGMPYAHPTVEHYSPLFVTLGAASDPTAPGEQVVDGFWMGLSKRSLQVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Z9</accession>
    <name>A0A0Q8V9Z9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07900</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895422.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53990">
        <property type="protein sequence ID" value="KRC53990"/>
        <property type="gene ID" value="ASE19_07900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1455817at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.428.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036265">
        <property type="entry name" value="HIT-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54197">
        <property type="entry name" value="SSF54197"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="22248" checksum="72534B3BF1B6AC37" modified="2016-01-20" version="1">MAESAEQVHARVMAAADENGRVPLPSVASWDIFPWEVVDGELAPKRLADPAPERVREGEGGVDCSLCGADQPGVIWTNDRWRLKHLRERSGLPLVLMLEPVAHLDLPDLDDAMAAEHGVLAVRIARIVEGLPNVARCHVQRVGDGAEHLHTWLMARTAGLPSILGSFAVDWDDILPPGPEDVWRADIAAVATALASYDGRAVGLDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA28</accession>
    <name>A0A0Q8VA28_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09920</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894664.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52729">
        <property type="protein sequence ID" value="KRC52729"/>
        <property type="gene ID" value="ASE19_09920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1622152at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="73" mass="7992" checksum="3579AAA6B2F2CF6C" modified="2016-01-20" version="1">MRKDERIRYRTGEREALIRHGVRAICLTSGNLAGAAMADLLIAQRVEIETAASGEGPALFVLSQQGLREIVLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA77</accession>
    <name>A0A0Q8VA77_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase</fullName>
            <ecNumber evidence="2">2.7.6.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_08020</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; tetrahydrofolate biosynthesis; 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 7,8-dihydroneopterin triphosphate: step 4/4.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.6.3" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895443.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54011">
        <property type="protein sequence ID" value="KRC54011"/>
        <property type="gene ID" value="ASE19_08020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1953248at2"/>
    <dbReference type="UniPathway" id="UPA00077">
        <property type="reaction ID" value="UER00155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003848">
        <property type="term" value="F:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046656">
        <property type="term" value="P:folic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00483">
        <property type="entry name" value="HPPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000550">
        <property type="entry name" value="Hppk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035907">
        <property type="entry name" value="Hppk_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01288">
        <property type="entry name" value="HPPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55083">
        <property type="entry name" value="SSF55083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01498">
        <property type="entry name" value="folK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00794">
        <property type="entry name" value="HPPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0289">Folate biosynthesis</keyword>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HPPK" evidence="8">
        <location>
            <begin position="111"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS00794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="189" mass="20850" checksum="8226BFFF3E87D822" modified="2016-01-20" version="1">MTETPNPNIIDTDTLTGEMRPIRRMVIALGSNLGERFTNLQGGVDALADTPNVWVTGVSPVYETAPVDCPPDSQPFLNAVILADTTLSAHRLIDRALAIEDAFDRLRSETKNAPRTLDVDLIVVGDRRSDKEELKLPHPRAHERAFVLQPWLDLEPDAEFLDRGPVAELLAKVGTDGLTPRPDLVLELE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAH6</accession>
    <name>A0A0Q8VAH6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08535</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895527.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54095">
        <property type="protein sequence ID" value="KRC54095"/>
        <property type="gene ID" value="ASE19_08535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="43"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="371"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="371"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="415" mass="42226" checksum="F6C17E3354740AA6" modified="2016-01-20" version="1">MRPPSLRRLGLVLLVGLLLLSGCKFDGIDSMALPGGKGTGDDAIKVTVELPDVGTLTPNAQVKVDDIAVGTVTAVRVENWHAVADLSLERDVDLPANALAKVGVNTLLGSAYVELTAPARAEGALRSGDRIPLEHGRAYPSTEQVLSAASLALNGGGLEQLSTITVELNKVLGGNDRAVADLLPRLDSFVGTLDGQRGEILTAVRDVARLSQRFARDRGTITAALDEIGPALDVLARNRPDLTRALVALTRLSEVATPLVGRVKDDLVADLQDLVPVLQSIRAAGNSAVSALGFAVTFPFAPETVQNACRGDYCNLALTLDLTNSSLLNGFIRPDGSIGVPGLPGLPDLGNLLGGLLPGVSGLLAGLTTGGAQGSTKGSPKGSGAGAGSTGSSGPASSLTELLGGLLGTNKAGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAJ1</accession>
    <name>A0A0Q8VAJ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10790</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52889">
        <property type="protein sequence ID" value="KRC52889"/>
        <property type="gene ID" value="ASE19_10790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="171211at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359877" evidence="1">
        <location>
            <begin position="23"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="351" mass="35843" checksum="C6F3A959B8A1FA6C" modified="2016-01-20" version="1">MKSSRGLVAIMGVACSLVLAFAASAAADAGPTDTVLASYAASVAHDGAGDATSSPLVSLTGLAVNGDTMTVGYHAEGIAAFPEGGYGIQFSWDGCQGGFNREIVAKSGTFDGSFTVTASFVGSNWTIDAFYDDQASTAFLAASLDARLQFPCEPAVNTTSFTIGEVPPTPDALQNTAPPTVVGTPRVGVRLTASPGMWSPSGATFAYQWLADGSAIVGATAATYTPTSGVKGRRISVRATASKVGLASASATSAKTALVAAGIVTNRSLPTIAGTKRVGYRLTASVGSWSPTGLTYRYQWFKATAAITGATGRTYKLPAGVRGKRIRVRITAARTGYASAARYSAFTVPIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAJ5</accession>
    <name>A0A0Q8VAJ5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_08620</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895543.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54111">
        <property type="protein sequence ID" value="KRC54111"/>
        <property type="gene ID" value="ASE19_08620"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="21"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="44"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="215" mass="23994" checksum="E6012BE12E82D43D" modified="2016-01-20" version="1">MPGEVVPIPRRNPARPQERGDRRRDELLAALEALLASAPLSAISIADVARAAGVNRSVFYFYFANKQDAVFAMLEDLFLAQSVEVGAVLQQEGNRLENVAAALGQTVHLWRDHRDLMAAAFEARASDAGAFAAWDRWIERYVGFLAEFIETERAEGLAPPGPDAEQLARVLIAANERMLERHLRNHEDEAAAVELHRILVHVWTRSIYDTALEND</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAN0</accession>
    <name>A0A0Q8VAN0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08810</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895575.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54143">
        <property type="protein sequence ID" value="KRC54143"/>
        <property type="gene ID" value="ASE19_08810"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034733">
        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011763">
        <property type="entry name" value="COA_CT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011762">
        <property type="entry name" value="COA_CT_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01039">
        <property type="entry name" value="Carboxyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50989">
        <property type="entry name" value="COA_CT_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50980">
        <property type="entry name" value="COA_CT_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA carboxyltransferase N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="domain" description="CoA carboxyltransferase C-terminal" evidence="2">
        <location>
            <begin position="268"/>
            <end position="496"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="516" mass="54550" checksum="BEB7C8C650DB03D4" modified="2016-01-20" version="1">MNETGPHPHHAAHAALLDEARGEAVRRQHDRGKLTARERIALLVDEGTFREIGALARPEAPGPRGEPLLGDGIVTGTARIDGRPVVLTVSDYTVAGGSNGLVGNEKWRRCAEIAATRGIPLVMLLDGGGHRIHEGLDARDFAGGFDIQEMQTRLSGWVPMVAAILGPGYGQPTLAASMCDFVVAVRGISSIGMAPPALVRAATGETTDAEALHGADAQASYGSIDLAVDTEEEALDALRWYLDLLPSNAEAELPREVAAPPRPDAAAAIDSAVPASLRQAYDMAEVITGIVDEDSEVELKAAFAPNLITTLARVEGRPIGIVANQPLALAGMLDADAADKAAHFVSLCDAFGIPLLVLIDLPGLAVGADAERSGLARSSARLSLELGSATVPTFTVVARKGYGGGYVIMSGGRTFHPELVAAWPHAETAVMAPETAIELVFRRELAESEDPTQRRKELAEQFRGQLGAVRGAEGFGYDVVLRPSETRAWLADLLPVLPRHRMMQSLTPRRHGVGPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBY0</accession>
    <name>A0A0Q8VBY0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04660</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54773">
        <property type="protein sequence ID" value="KRC54773"/>
        <property type="gene ID" value="ASE19_04660"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="62" mass="6639" checksum="94E5E81C91D98FD7" modified="2016-01-20" version="1">MGALHPAEQVATIALAFGPFVVLGIVIMIRRRAELEEERQEAARVAPGNDEARPSDGEPGLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC08</accession>
    <name>A0A0Q8VC08_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AAA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13540</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895831.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53369">
        <property type="protein sequence ID" value="KRC53369"/>
        <property type="gene ID" value="ASE19_13540"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025745">
        <property type="entry name" value="Mrr-like_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14338">
        <property type="entry name" value="Mrr_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="590"/>
            <end position="743"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="856" mass="94431" checksum="C5D1D1EBEC518743" modified="2016-01-20" version="1">MTKVWGIHNDQVPAAQLVAEGFVSLGWDDLGDLRDIGDNQEAMKAAVAATYPTTKPGAIPGLAGYLRRFAFEVAVGDLVVAPSKQKPAYNIGRIAGSYEFAAGAPVHRHRRPVEWLVTDAPRDAFTQTARYELGSAITFFQVANHAEEFEQAVVDGVPHVSEAASGNEQVRYALLQRTILEILRDRGLSARRVVVDELAERIDFTEFELVKTGSGIPRYEAAVNWGSVDMRAAGWIDKTNSGWVLTAAGQKVLDEADPESDLAKISSAAYRDAQAAKRADQGRFKAGSYPLIDAAVKLIGEGQWTTYSDIAQAVGTNPPSVGEYVHRVELDGHHRVVPVGQSPYRPELREALEAEGVEFDHRGLPDPRSRVSAEDLREEMDLLGLLPKVGKRGWLIRGSSVNGKDLVPTWREEGWISLAASNLREVSAGMSRDELKPIVDEDYAHASYHVKGEKLDEFHAFLTRMEPGHLIATVDQGRLYVGNLVGEARYQPSPEGDSNLVRDVDWVSDEGGVDYADLPAELATKLKVQRDVVDLTQQLDTLEGLLETETEQVPPPVYVKVELDAATPELAADLHVSQAWLQECIDLLNDRPQLIFYGPPGTGKTFLAQAIARHVAGDNFRLVQFHPAYSYEDFFEGYRPTASGGFELKPGPMRKIVDQALANPREPFVLIIDEINRGNLAKVFGELYFLLEYRKDNVELLYADEEFNLPENVFIIGTMNTADRSIALVDAAMRRRFAFLPLHPSEEPTDQILRSWLAEQGLPARVADLLDELNRRIEDSDFKIGPSYFMRPAVHASGGLDRTWRTSILPLLEEHHFGELTGAQVAARYGFKVVAAAIDAPVATLAEAADGTADPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC76</accession>
    <name>A0A0Q8VC76_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894255.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54826">
        <property type="protein sequence ID" value="KRC54826"/>
        <property type="gene ID" value="ASE19_05010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1563802at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039569">
        <property type="entry name" value="MaoC-like_dehydrat_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016790">
        <property type="entry name" value="Thiol_ester_hydratase_Rv0216"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13452">
        <property type="entry name" value="MaoC_dehydrat_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF021494">
        <property type="entry name" value="Rv0216_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC_dehydrat_N" evidence="1">
        <location>
            <begin position="89"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="349" mass="37186" checksum="9487B4A30E0A0897" modified="2016-01-20" version="1">MTKTNAGNFFEDFTVGQRIVHATPRTVTEGDRAVYGSLYPTRFAVPSSASFAASVGLTEPDGTGHPVEELIAFHIAFGKTVPDVSLNAVANLGYAECRFHQPVVPGDTLATTSEVIGLKQNSNGKSGVVYVRSTATNQRGEVALEWARWVMVHKRDADAAAPEAVVPDLAAVVDPSDLVLPAGLDFTAYDFAAAGEAHRFDDYEVGEKIDHVDGVTLTASEHQQATRLWQNTAKVHFNVEARPDGRNLVYGGHIISMARALSFNGLANAQLVAAINAGAHTAPAFAGDTVYAWSEVLDKAETAAPGVGALRLRLVATKGRDASMTLRGDDGKYAPGVLLDLDYWALIPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCA7</accession>
    <name>A0A0Q8VCA7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04490</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894339.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54742">
        <property type="protein sequence ID" value="KRC54742"/>
        <property type="gene ID" value="ASE19_04490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1324470at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030163">
        <property type="term" value="P:protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008269">
        <property type="entry name" value="Lon_proteolytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027065">
        <property type="entry name" value="Lon_Prtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10046">
        <property type="entry name" value="PTHR10046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05362">
        <property type="entry name" value="Lon_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359897" evidence="1">
        <location>
            <begin position="25"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="3">
        <location>
            <begin position="141"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="Lon proteolytic" evidence="2">
        <location>
            <begin position="243"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="349" mass="36908" checksum="050FE09A9BF2AA4F" modified="2016-01-20" version="1">MSQRLIAVCIAGPLALILGGVALAVPLPYASYSPGPTFDMLATDANRAEIIQVDGHKAYYDKGELRFTTVIASSNGDKLTLGDALARWLDPDKAVVPYDVVHPPKQSAEDEEAEGAVQMTTSQDTAKAVALQEMGIEVPTALQVAYVRPEGASVDKLLVRDILKEVDGEPVTDAEQLVRAVQKHKDLSLVELRIQRGDDELTVRIKPKMGEVDGKKVPLIGITPGLGYEFPFDIQLHVDPSVGGPSAGLMFSLAIYDTLTPGSLTGGATVAGTGELAPDGRVGPIGGIAQKIAGAEKAGAELFFVPKDNCADVAGLDPDLRLVKATTMHEARQALEKWAGDHDAKLPTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCC8</accession>
    <name>A0A0Q8VCC8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ArsR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897022.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53481">
        <property type="protein sequence ID" value="KRC53481"/>
        <property type="gene ID" value="ASE19_14175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1772343at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01022">
        <property type="entry name" value="HTH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="10"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="125" mass="13194" checksum="E35A2CF499E5C026" modified="2016-01-20" version="1">MAINQVDRTTEVDALVAAACLLHGLSDPNRLAILQHLALGEHRVVDLTDHLGLAQSTVSKHLACLRDCGLVVSRPSGRASMFSLAHPAATADILRAAERLLEATGEAVVLSANFGPAALHGDEEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCE7</accession>
    <name>A0A0Q8VCE7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH hxlR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04270</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894377.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54703">
        <property type="protein sequence ID" value="KRC54703"/>
        <property type="gene ID" value="ASE19_04270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1919329at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="2">
        <location>
            <begin position="22"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="236"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="237"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="255" mass="27791" checksum="B7CBF8CBCE82E908" modified="2016-01-20" version="1">MTLEELGSRQLADGPFVNADYCEVSTATRLLGDRWSLLVVRELFVGNTRFTEIQEALPGLSRGLLASRLGYLTRLGIVDRRVADGTDLRAKYSYALSDSGKALGPVLTALGDWAAKWKPPTATNVGGEAMLDLEQLRESFDPSAMPADRMQIQFLLSDSDAAWLRADRTGVRACRGVNEGSPDLVVRTSLSTLNGLYWGQSTCREAIARHDISFDGPMAYAQAFSGWFANRPAVRGVESDGPDRSEGGDAEKVHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCL1</accession>
    <name>A0A0Q8VCL1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MerR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897107.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53395">
        <property type="protein sequence ID" value="KRC53395"/>
        <property type="gene ID" value="ASE19_13700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1467120at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00376">
        <property type="entry name" value="MerR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="257" mass="28501" checksum="5607E48B4696CBEF" modified="2016-01-20" version="1">MLTIGELAAYAGVTIRTVRHYHAKGLLPEPERDHSGYRRYGARAVSDLIRIRTLAEAGVPLARVEELLDADEEEFAAAVADIDRRLRAEIRERQRHRERIAQLAAGDNLALPPEAAAYLARLREIGLPERLIAGERDAWILVAAQLPQHMPAFMALKEAQLDQPEQNAFHRDLADAIDWAPDDPRVAGLADQLVGLIEAELAAAPDGWDEDDLDLPDDLAELLDGVFLSSVPMAPRLLALLEERGWTGWTKLARLDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCQ0</accession>
    <name>A0A0Q8VCQ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FMN reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05360</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894197.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54884">
        <property type="protein sequence ID" value="KRC54884"/>
        <property type="gene ID" value="ASE19_05360"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1818437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN_red" evidence="1">
        <location>
            <begin position="6"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="18851" checksum="DF2602B75E0F6AE9" modified="2016-01-20" version="1">MTDTTTRVAVLVGSLRADSLNRKLAEILKAEAPAGVELDIIDGLGEVPFYNEDLDGASAPAAATALRDRVASADRVLAVTPEYNGTMPAVLNNAIDWISRPYGAGAIVGKPFGVIGATPTPYGGKWAHGDTARSAGIAGAIVVEDVTVSQPAVEVDPTTDPEVRTKLLAALGTLVDFTPAVSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCY4</accession>
    <name>A0A0Q8VCY4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Branched-chain-amino-acid aminotransferase</fullName>
            <ecNumber evidence="15">2.6.1.42</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">ASE19_05415</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <reference evidence="17 18" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>2-oxoglutarate + L-isoleucine = (S)-3-methyl-2-oxopentanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24801"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:35146"/>
            <dbReference type="ChEBI" id="CHEBI:58045"/>
            <dbReference type="EC" id="2.6.1.42"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 15">
            <text>2-oxoglutarate + L-leucine = 4-methyl-2-oxopentanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:18321"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:17865"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57427"/>
            <dbReference type="EC" id="2.6.1.42"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 15">
            <text>2-oxoglutarate + L-valine = 3-methyl-2-oxobutanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24813"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57762"/>
            <dbReference type="EC" id="2.6.1.42"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4 14">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5 16">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 4/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7 16">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 4/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6 16">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 4/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8 13">Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.42" evidence="15"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894186.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54895">
        <property type="protein sequence ID" value="KRC54895"/>
        <property type="gene ID" value="ASE19_05415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275805at2"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00058"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00073"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00062"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052656">
        <property type="term" value="F:L-isoleucine transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052654">
        <property type="term" value="F:L-leucine transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050048">
        <property type="term" value="F:L-leucine:2-oxoglutarate aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052655">
        <property type="term" value="F:L-valine transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01557">
        <property type="entry name" value="BCAT_beta_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001544">
        <property type="entry name" value="Aminotrans_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018300">
        <property type="entry name" value="Aminotrans_IV_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036038">
        <property type="entry name" value="Aminotransferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005786">
        <property type="entry name" value="B_amino_transII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043132">
        <property type="entry name" value="BCAT-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043131">
        <property type="entry name" value="BCAT-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033939">
        <property type="entry name" value="BCAT_family"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11825">
        <property type="entry name" value="PTHR11825"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01063">
        <property type="entry name" value="Aminotran_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006468">
        <property type="entry name" value="BCAT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56752">
        <property type="entry name" value="SSF56752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01123">
        <property type="entry name" value="ilvE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00770">
        <property type="entry name" value="AA_TRANSFER_CLASS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="15" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 15 17" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="15" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="11 14" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 15 17" id="KW-0808">Transferase</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="12">
        <location>
            <position position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00004931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00005072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00009320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR006468-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU004106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU004516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU004517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU004519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KRC54895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="361" mass="39575" checksum="5FFAF6742426CB97" modified="2016-01-20" version="1">MTMQITTTLSAHPTDDARLAEILSNPGFGSHFSDHMFTVEWTPEKGWYDARITPYGPITLDPAAAVLHYAQETFEGMKAYRHADDSLWLFRPEANAERMKRSSHRLALPVLEVPDFVQAVEELVKVDARWVPGNPDGGEKSLYIRPFMFASEQFLGVRPAQHVTFMVITSPAGAYFKGGIKPVTLWLSEDYTRAGRGGMGAAKTGGNYASSLVAQQEAYAQGCDQVVFLDAQEGKYVEELGGMNMYFVFDDGSIVTPETGTILEGITRASIIELAGKMGHQVTERKFGIDEWRDGVTSGRITEIFACGTAAVVTPVGSLKYDGGEAPAPASQDLTMRIRDALVGVQLGRNEDTFGWMKQIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD60</accession>
    <name>A0A0Q8VD60_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Methionine ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_09480</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894594.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52656">
        <property type="protein sequence ID" value="KRC52656"/>
        <property type="gene ID" value="ASE19_09480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1464674at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="25"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="60"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="95"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="150"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="195"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="21"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="23780" checksum="21696E9828BF0DE9" modified="2016-01-20" version="1">MRALTSDTRLFDLQPEFWSAAGETVVMASTALLLGGALGLALGLGLHLTRKGGLFANRPVSVVLNVLVNFFRPIPFIIFIAALQPLARHVVGTGIGIRAATFGITIAALFGISRIVEQNLVTVNPGIIEAARAMGASRTRITLTVLVPEALGPLVLGYTFAFVAIVDMTAIAGVIAGGGLGSFAQRFGFRQFDQVVMWAAILVLVAMVMLIQVGGNLLARKVLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD78</accession>
    <name>A0A0Q8VD78_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Peptide ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_14830</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896434.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51367">
        <property type="protein sequence ID" value="KRC51367"/>
        <property type="gene ID" value="ASE19_14830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1303270at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="17"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="53"/>
            <end position="60"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC51367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="333" mass="36031" checksum="C864D9C70ABB1698" modified="2016-01-20" version="1">MAGSGTAHLRPDQERALVVDDLVVQFPVTGGTVHAVSGLSLDLLPGETLGILGESGCGKSSAGRAVMQLPPPTSGEVRLGTVELTGIKARDMRRKRARMQLVLQDPVSALNPRRRVKDLVVEGLEIWGWGDRDRDSFVDELLSSVGLDPETVRDKRPHELSGGQCQRVCIARSIALDPDVLICDEPVSSLDVSVQAQILNLLEQARERLRLAMIFIAHDVAVVKNISDRVLVMYLGKTCEVLPSASLEGALHPYTRLLLASVPEASDELPAATGAPARAVELPSPLDPPSGCRFRTRCPLATDRCASEEPVLREVRPAQYVACHHVDESTEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDD0</accession>
    <name>A0A0Q8VDD0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15210</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896498.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51431">
        <property type="protein sequence ID" value="KRC51431"/>
        <property type="gene ID" value="ASE19_15210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2216907at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="205" mass="21872" checksum="C91A6E22A561DE31" modified="2016-01-20" version="1">MTEAQLTEQIHRLAEGLEAPPGDADGDLVRGRARLRRRRTTLAGGVLTVALAGGLAWSALDTDSAPPVAGEPATIQPGAPADLRDDLEARVRELAAPTRSREDELPAITVRQLRWITDALVDRVSGPLGWLSVGTSDSWRASGAEACPRGWTCEDAQVRGADRARWAEAGTVHQLAVEVDGHVHLFTLNGADERPAEVAWGGTRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEQ6</accession>
    <name>A0A0Q8VEQ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytoplasmic protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895047.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53120">
        <property type="protein sequence ID" value="KRC53120"/>
        <property type="gene ID" value="ASE19_12110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1817663at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007351">
        <property type="entry name" value="YjbR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038056">
        <property type="entry name" value="YjbR-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35145">
        <property type="entry name" value="PTHR35145"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04237">
        <property type="entry name" value="YjbR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142906">
        <property type="entry name" value="SSF142906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="117"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="124"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="145" mass="16213" checksum="FAF7FD407A10DAF0" modified="2016-01-20" version="1">MNGNKLQEQARERAQELPGARLEHPFGPDWEVFKVRDKVFMLLTDITGEPIVIIKAAPEHGEELRKQHEDITPGYHMNKQHWITLHPGGGMRKELVDELVTESFLLVVEGLPHAKRPVDPATFGSAGTNDTTPTVTDDTTTSDHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGC4</accession>
    <name>A0A0Q8VGC4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">RecBCD enzyme subunit RecB</fullName>
            <ecNumber evidence="8">3.1.11.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Exonuclease V subunit RecB</fullName>
            <shortName evidence="8">ExoV subunit RecB</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Helicase/nuclease RecBCD subunit RecB</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">recB</name>
        <name evidence="12" type="ORF">ASE19_11665</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>Exonucleolytic cleavage (in the presence of ATP) in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides.</text>
            <dbReference type="EC" id="3.1.11.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Heterotrimer of RecB, RecC and RecD. All subunits contribute to DNA-binding. Interacts with RecA.</text>
    </comment>
    <comment type="domain">
        <text evidence="8">The C-terminal domain has nuclease activity and interacts with RecD. It interacts with RecA, facilitating its loading onto ssDNA.</text>
    </comment>
    <comment type="domain">
        <text evidence="8">The N-terminal DNA-binding domain is a ssDNA-dependent ATPase and has ATP-dependent 3'-5' helicase function. This domain interacts with RecC.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the helicase family. UvrD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.5" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894972.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53042">
        <property type="protein sequence ID" value="KRC53042"/>
        <property type="gene ID" value="ASE19_11665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="137860at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008854">
        <property type="term" value="F:exodeoxyribonuclease V activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01485">
        <property type="entry name" value="RecB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014017">
        <property type="entry name" value="DNA_helicase_UvrD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000212">
        <property type="entry name" value="DNA_helicase_UvrD/REP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038726">
        <property type="entry name" value="PDDEXK_AddAB-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004586">
        <property type="entry name" value="RecB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014016">
        <property type="entry name" value="UvrD-like_ATP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070">
        <property type="entry name" value="PTHR11070"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070:SF23">
        <property type="entry name" value="PTHR11070:SF23"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12705">
        <property type="entry name" value="PDDEXK_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00580">
        <property type="entry name" value="UvrD-helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13361">
        <property type="entry name" value="UvrD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51198">
        <property type="entry name" value="UVRD_HELICASE_ATP_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51217">
        <property type="entry name" value="UVRD_HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 8" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="8 9" id="KW-0347">Helicase</keyword>
    <keyword evidence="8 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 8" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UvrD-like helicase ATP-binding" evidence="10">
        <location>
            <begin position="1"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="domain" description="UvrD-like helicase C-terminal" evidence="11">
        <location>
            <begin position="357"/>
            <end position="617"/>
        </location>
    </feature>
    <feature type="region of interest" description="DNA-binding and helicase activity, interacts with RecC" evidence="8">
        <location>
            <begin position="1"/>
            <end position="764"/>
        </location>
    </feature>
    <feature type="region of interest" description="Nuclease activity, interacts with RecD and RecA" evidence="8">
        <location>
            <begin position="782"/>
            <end position="1113"/>
        </location>
    </feature>
    <feature type="active site" description="For nuclease activity" evidence="8">
        <location>
            <position position="1005"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="19"/>
            <end position="26"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="853"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="987"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="1005"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC53042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1113" mass="119947" checksum="2240981CD08DF58B" modified="2016-01-20" version="1">MNPFDIRGPLPTGTTLLEASAGTGKTWTIGALVTRYVAEEGVPLEQLLVVTFGRAASQELREQVRRQLVEAEEALAPDAVVTAEASEVIALLVDCSPGERMLRHRRVVQALADFDAATIATIHQFCSLVLESLGVAGDTDARARLVEDLDDMLVEVVDDLYLRAFAHGTGGGPAFSHADALAIARAAVNDPQARLEPADLPREHPAGRRVSFATAVRKEMTRRKRRLGVLSYDDLLSQLADALEAEDSPARARMRGRWSIVLVDEFQDTDPVQWQVFDRAFSGHATMVLIGDPKQAIYAFRGGDVTTYLTAAATATTQQTLGVNRRSDAGLLDGFQALLRGAELGDPQIVVHDVTAHHQESRLVGAPRPAPFRIRVVRRETFGKGGSSALPVGKVRPHVAQDLAHDIRELVTSDATFEGRPLEPSDIAVICYRHADLAAARAALLAVGVPAVIAGGGSVFATPAAAEWLSLLEALEQPHRTPRVHAAALTCFLGYDAASLDAGGDDLTDDLGDRLRSWSEALARRGVAAVVEAASSGGMPARMLSLVGGERTLTDVRHIGEVLHEVAQREQMGAVALLAWLREQVVEARDGRGAERTRRLDSDAAAVQLVTIHASKGLQYPVVYVPALADRHVGKPTRPLFHDADGRRCLDVGGSGPEWGDHCRRWAEEEAGEWLRLLYVALTRAQSQVVAWWAPTRNAEASPLHRLLLRRPLPGSAGLEPTVPPNPGLPDEDSATALFSAWRDRGGPQPEMAVPADHAGGLLPRELPDLAARTFTRSVDVEWRRTSYSALSKVDVVAHGQPGVASEPELGVKDDEDVAVVEVRAAREPSPASTVASPMADLPVGATFGSLVHAVLEHADPAAADLRAELLAHIDDQLTWWPVDLDPEVLADALVAVLDSPLGPLMGDATLRRVGGRDRLCELDFELPLAGGDDWDPHDEAVLLGDIATLLHRHLPEGDPVRAYAESLANPLLGGQVLRGYLTGSVDVVLRVRSETGDPRYVIVDYKTNWLGPMDEPLTAASYDTAALHDAMGHSDYPLQALLYAVVLHRFLRWRQPGYDPEVHFGGVAYLYLRGMCGPDTPVVDGSPAGIFSWRPPAALVTELSDLLDGMKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGI0</accession>
    <name>A0A0Q8VGI0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11925</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895020.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53090">
        <property type="protein sequence ID" value="KRC53090"/>
        <property type="gene ID" value="ASE19_11925"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="262" mass="27558" checksum="FD7ADEEB26B2EADC" modified="2016-01-20" version="1">MSTTSARSVIITGAGSGIGRAIARSFVDAGYEVYATDWSEERLKETADEFQTPANLHTRVLDVTDFEATRTVVGDVVAEHGKLDVFVNNAGLFDGYADVLETSTELWSRILGVNLTGTFHGCKAAAEVMIPQKSGRIVTIGSVAGQRGAADGIAYVTSKAAIEGMHRRLAIDVGPSNVTANVVAPGVIRTNLRATSEEVLGDLVSSQQRGIGVSPEIMDFLIPAKRSADPSEVANVVLFVASDEASYLNGQVIAVDGGWTAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGQ2</accession>
    <name>A0A0Q8VGQ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Diacylglycerol kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10385</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895169.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53617">
        <property type="protein sequence ID" value="KRC53617"/>
        <property type="gene ID" value="ASE19_10385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="869726at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003951">
        <property type="term" value="F:NAD+ kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017438">
        <property type="entry name" value="ATP-NAD_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005218">
        <property type="entry name" value="Diacylglycerol/lipid_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001206">
        <property type="entry name" value="Diacylglycerol_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016064">
        <property type="entry name" value="NAD/diacylglycerol_kinase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045540">
        <property type="entry name" value="YegS/DAGK_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00781">
        <property type="entry name" value="DAGK_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19279">
        <property type="entry name" value="YegS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00046">
        <property type="entry name" value="DAGKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111331">
        <property type="entry name" value="SSF111331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00147">
        <property type="entry name" value="TIGR00147"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50146">
        <property type="entry name" value="DAGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DAGKc" evidence="1">
        <location>
            <begin position="1"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="289" mass="29944" checksum="6389976599EDF2EB" modified="2016-01-20" version="1">MITNSDAGTADQEAVDAALAVLRERTEVEVRGTSSPEELDDVLAGAGERTVVVAGGDGSIHAVVQALHTRGELAGRTLALIPLGTGNDFARTLGLPLDAAEAAQVVVDGTARPTDLVVDEDGQVTVNSVHLGAGAEAGKAGARWKERLGKVGYPIGALQTALNPPTLRLRVEVDDEVVADLDQRVLMVAVGNGASVGGGTELTPDAEPHDGLVDVLVATPVKPLAKLGYALRLPFARHGEHDDVVIVRGSTVRVAGTPFDCNSDGEIEGPVSARTWRVLPAAYTMIVPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGS8</accession>
    <name>A0A0Q8VGS8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04320</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54713">
        <property type="protein sequence ID" value="KRC54713"/>
        <property type="gene ID" value="ASE19_04320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="17"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="40"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="216" mass="24730" checksum="94B737A6AF0D7932" modified="2016-01-20" version="1">MPSDTSDELGMRERKKQDSMARLRAAAKELMWAQGYETVTTKSIAARADMGEATLFRYVPSKLDLFLSVYGEEFGHVVDQCIRAHSELRVEQLRRTEDHIQQIIECYDLLASLYTRYPELAFTFVKESFGSSTNVGRSGLEYADRWFELLESILQHGRATSVLDLEDIPAVVQNCHAIYVHEVLRSRARDLPASDMPNRLRHRLELSLHHLSKGGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGX6</accession>
    <name>A0A0Q8VGX6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">Beta-glucosidase</fullName>
            <ecNumber evidence="3 11">3.2.1.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_02560</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>Hydrolysis of terminal, non-reducing beta-D-glucosyl residues with release of beta-D-glucose.</text>
            <dbReference type="EC" id="3.2.1.21"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the glycosyl hydrolase 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.21" evidence="3 11"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892743.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56725">
        <property type="protein sequence ID" value="KRC56725"/>
        <property type="gene ID" value="ASE19_02560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="654705at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008422">
        <property type="term" value="F:beta-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102483">
        <property type="term" value="F:scopolin beta-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030245">
        <property type="term" value="P:cellulose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001360">
        <property type="entry name" value="Glyco_hydro_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018120">
        <property type="entry name" value="Glyco_hydro_1_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017736">
        <property type="entry name" value="Glyco_hydro_1_beta-glucosidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033132">
        <property type="entry name" value="Glyco_hydro_1_N_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10353">
        <property type="entry name" value="PTHR10353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00232">
        <property type="entry name" value="Glyco_hydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00131">
        <property type="entry name" value="GLHYDRLASE1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03356">
        <property type="entry name" value="BGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00572">
        <property type="entry name" value="GLYCOSYL_HYDROL_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00653">
        <property type="entry name" value="GLYCOSYL_HYDROL_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4" id="KW-0136">Cellulose degradation</keyword>
    <keyword evidence="6 11" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0624">Polysaccharide degradation</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="440"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8">
        <location>
            <position position="172"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="8 10">
        <location>
            <position position="386"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="308"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="433"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR617736-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR617736-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU361175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC56725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="483" mass="53364" checksum="F72E49DA53F60B7C" modified="2016-01-20" version="1">MTPTTPTTDLLTFPADFLWGAATASYQIEGAVDADGRTPSIWDTFSRVPGAVRNGDTGDVACDHYRRMPEDVDLVRELGFGSYRFSIAWPRVRPDGGAPNPAGIGFYDRLVDELLGAGVLPWATLYHWDLPQSLEDADGWLNRDTAERYVEYALTVHDALGDRVHHWTTFNEPWCSAFLGYTGGQHAPGRQEGVAGVIAAHHLMLAHGRALDELRRRAPGDQLGITLNLTLSEPFDASEPADVAAAERVDQLWNRVFLDPVLRGKYDDGLAAHTRDMTWRGRTWQDFVQDGDLELIGAPIDFLGVNYYHGDAASGREHPAADLLGSRIPHPTRATSSPFPGGERLSFPRRGLPVTGIDWEVQPEGLTDLLVGLHRDYDLPPVYITENGAAYPDEVAADGTVSDPERVAYFDGHLRALRAAMAAGVDVRGYFAWSLLDNFEWAYGYEQRFGIVHCDFATQRRTPKASALQLAEVARTGRLPEVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHB2</accession>
    <name>A0A0Q8VHB2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cell wall synthesis protein Wag31</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Antigen 84</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_02325</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DivIVA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892701.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56683">
        <property type="protein sequence ID" value="KRC56683"/>
        <property type="gene ID" value="ASE19_02325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="875822at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019933">
        <property type="entry name" value="DivIVA_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007793">
        <property type="entry name" value="DivIVA_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35794">
        <property type="entry name" value="PTHR35794"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05103">
        <property type="entry name" value="DivIVA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03544">
        <property type="entry name" value="DivI1A_domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="5 10" id="KW-0132">Cell division</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="53"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="234"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00031737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC56683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="262" mass="28571" checksum="951EEBFC2F990B01" modified="2016-01-20" version="1">MPLTPEDVSNKRFTPVRLREGYDMGEVDQFLDEVEAELARLTQENDDLRAKLAAAQAGGSSAAFDAPTQLAPVPEAAPEPPAPVEVPKPVEPVAPVVAAPVAAPQASGGVQTIRVETVPEASNAAARLLEIATRNADELVEDAKNEADKIVGEARTKSERLESEAKVKADRLESDARTRAEMLDSETAERRTQLFGDLEKERDKLSAEVETLRSFEREYRSRLKSYFTQQLESLQTPGDTLAPVEEAPAPKRLRSILGEEEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHB4</accession>
    <name>A0A0Q8VHB4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02695</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892766.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56748">
        <property type="protein sequence ID" value="KRC56748"/>
        <property type="gene ID" value="ASE19_02695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="930905at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="6"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="141"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="216" mass="22948" checksum="57FB53277C9D685E" modified="2016-01-20" version="1">MSDKVTVLLVDDHELIRNGLGAVLDLEPDLEVVATAGSVAEGIQRYAEFRPDVVITDLQMQDGTGLDVVRTLRKQSDKVGLIVLTMHSGDEQIFAAMQAGASGFVGKDAPSTEVIKAARHAAVSPKAFVCAGLVGAMMRRQSAESTALTEREHDVLLLLAEGLNAAAIGQKLYLSESTTKSHIARIYQKLGAANRAQALVTAMRIGLLSTVQPSAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHM0</accession>
    <name>A0A0Q8VHM0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_07340</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895320.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53888">
        <property type="protein sequence ID" value="KRC53888"/>
        <property type="gene ID" value="ASE19_07340"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1454917at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007657">
        <property type="entry name" value="Glycosyltransferase_61"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04577">
        <property type="entry name" value="Glyco_transf_61"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="407" mass="44754" checksum="FE6DD9168DAEA41A" modified="2016-01-20" version="1">MSLPSWLRPWWPLFKRLHRALTFVLGCVFRVLSRVLGRRGVPVRATARSSETAALDPAHVVLHPGSAEEQLTRPATKGDPAGHWLFEELRTAIVPATFVLEVKEGRLSGDYAATTTPGKVLDHETSTYFGVEDWREHPVFLRPTLGPTEHVPGTVLSLTTRGTSINYYHFLYDAIGRLAVLDECLGGLDALRPDAVVVPHGARYQRQLLELAGVGGRLIQPERGRTVAADRLVVPSNPNWALQAPPATVRWLREHLAPTPGAGADGPRRIYITRGDTPRTRRYVQEPALWPELERRGFVRIDPGAHSVQEQIDLFHGAEVVVSPHGAGLSNITFSRPGVRVLEMFASTYVHLGLWSICQAIDADYRYLVGDGPTGGPGRNSGVLDDVSAPPQKVLDIVDDMLSGHHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHP5</accession>
    <name>A0A0Q8VHP5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD-linked oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09900</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894662.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52727">
        <property type="protein sequence ID" value="KRC52727"/>
        <property type="gene ID" value="ASE19_09900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="330793at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="1">
        <location>
            <begin position="38"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="456" mass="47105" checksum="A3B3584238B93349" modified="2016-01-20" version="1">MTTTPDIAPLTRLASGCEVHLPGSAGYDAARTPWNLAVDQRPAAVAVPRTVEQVQDVVRAAAAAGLRVAPQSTGHGAAALGELELGGVVIVRLSELTGVTVDADTRTARVVGGTLWQDVVAAASSYGMTALHGSAPDVAVAGFVLGGGLSFYGRQHGLAANAVTAIEIVTGEGALRRASATESPDLFWAVRGGGGNFGVVVAIELELLPHADVYAGMLLWDRERAPEVVPAWVAWTRTAPESATTSLRVMSFPPLPELPPFLSGRDLVVIDGAVLESDDDAAALLAPLRALAPEMDTFGRIPATALLEVHMDPPGPSPAVADHSVLGSLDAAGVEVFLEQVGPGTRTGLLAAELRHLGGALARPDARGGALSAIPGEYALFCVAMAPEPQAAVAGRAAAFGVVRALSAWSRANLVPTFTETRVDSSRFYDGEDWAALCRARDVADPNRVFVANHGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHR9</accession>
    <name>A0A0Q8VHR9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Laccase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_02345</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>adenosine + H(+) + H2O = inosine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:24408"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:17596"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.4"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="4">
            <dbReference type="Rhea" id="RHEA:24409"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>adenosine + phosphate = adenine + alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:27642"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="2">
            <dbReference type="Rhea" id="RHEA:27643"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>inosine + phosphate = alpha-D-ribose 1-phosphate + hypoxanthine</text>
            <dbReference type="Rhea" id="RHEA:27646"/>
            <dbReference type="ChEBI" id="CHEBI:17368"/>
            <dbReference type="ChEBI" id="CHEBI:17596"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="1">
            <dbReference type="Rhea" id="RHEA:27647"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>phosphate + S-methyl-5'-thioadenosine = adenine + S-methyl-5-thio-alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:11852"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58533"/>
            <dbReference type="EC" id="2.4.2.28"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="3">
            <dbReference type="Rhea" id="RHEA:11853"/>
        </physiologicalReaction>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the purine nucleoside phosphorylase YfiH/LACC1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892705.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56687">
        <property type="protein sequence ID" value="KRC56687"/>
        <property type="gene ID" value="ASE19_02345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1393323at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004000">
        <property type="term" value="F:adenosine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017061">
        <property type="term" value="F:S-methyl-5-thioadenosine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd16833">
        <property type="entry name" value="YfiH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.140.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003730">
        <property type="entry name" value="Cu_polyphenol_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038371">
        <property type="entry name" value="Cu_polyphenol_OxRdtase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011324">
        <property type="entry name" value="Cytotoxic_necrot_fac-like_cat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30616">
        <property type="entry name" value="PTHR30616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02578">
        <property type="entry name" value="Cu-oxidase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64438">
        <property type="entry name" value="SSF64438"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007353"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="234" mass="24002" checksum="E7FDB3A7C0159F07" modified="2016-01-20" version="1">MFAFRETHDLDPDPAAGGRRVEVAFTDSSLDLQEGEGVTAALAVLGAELDVAFARVSQVHGDDVVVVDGATELGGGAVGVADGVVTRERRTALVIRVADCVPVLLADPAAGVVGAAHAGRLGVELDVVTRTVERMRALGATDVRAWVGPHICGGCYEVPAGMRDEVAAAVPQTYAETTWGTPALDLGAGVTAQLTAAGVDVTVVPGCTREDHGLHSYRRDGAGAGRFAGLVWLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VII5</accession>
    <name>A0A0Q8VII5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminotransferase</fullName>
            <ecNumber evidence="2">2.6.1.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13980</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.2" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897144.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53682">
        <property type="protein sequence ID" value="KRC53682"/>
        <property type="gene ID" value="ASE19_13980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="554560at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004021">
        <property type="term" value="F:L-alanine:2-oxoglutarate aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="35"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="404" mass="44782" checksum="EE11E3DA649D8100" modified="2016-01-20" version="1">MRKIRQSKKLANVRYDVRGPILVEAQRLEAEGHKILKLNIGNPAPFGFEAPEAIVADMVHNLPDAQGYSDSRGIYSARTAVAQYYQSRGLKDTAVDDVFIGNGVSEMISMVLTTFLDDGNEILVPAPDYPLWTGAVSLSGGTPVHYRCDEDNGWMPDLEDIESKITENTHGLVIINPNNPTGAVYSKEMVEKLVDIARRHDLVIFSDEIYEKILFDDAVHHHAAAAAGNDVLCLTFSGLSKAYRVCGYRAGWVMVSGPKELAEDFLEGLTLLSNMRMCANVPAQHAIQTALGGYQSINELIVPGGRFYEQAMLADRLLNDIPGVSSVRPRGALYCFPRLDPDVYEIDDDEQFVIDLLRSKKILVTHGTGFNWFAPDHFRLVTLPDVDVLEEAIGRIAEFLATRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIM8</accession>
    <name>A0A0Q8VIM8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase</fullName>
            <ecNumber evidence="2">4.2.1.17</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_24015</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.17" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894024.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57390">
        <property type="protein sequence ID" value="KRC57390"/>
        <property type="gene ID" value="ASE19_24015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004300">
        <property type="term" value="F:enoyl-CoA hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="318"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="339" mass="36446" checksum="1586F11D98D3C58E" modified="2016-01-20" version="1">MSDEAAWCRPAHEGPDSPYRAAAAPDTTAPAYRTLTYEVDGRVARLTFNRPEQGNSITPDTPVELADAVERADLDPRVHVIVLSGRGKGFCGGYDLAASAEGLMDGQMAGSSPREGTVLDPTVQMLNHDPAGTWDPMVDYAMMSRFTRGFASLLHANKPTVASIHGFCVAGGTDIALHCDQIVIAADAKIGYPPTRVWGVPSAGLWAHRLGDQRAKRLLLTGDTLTGREAAAWGLAIEAPEPEQLAVRTEALVQRIAAMPLNQLVMTKLALNSALLAQGVQNSQMISTVFDGISRHTREGYAFQQRAAEVGFRQAVRERDAAPYDDHGSRTSNVTGRND</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJC9</accession>
    <name>A0A0Q8VJC9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Alkane 1-monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">ASE19_12825</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(3+)</name>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell inner membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the fatty acid desaturase type 1 family. AlkB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895701.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53239">
        <property type="protein sequence ID" value="KRC53239"/>
        <property type="gene ID" value="ASE19_12825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1202565at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03512">
        <property type="entry name" value="Alkane-hydroxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00730">
        <property type="entry name" value="rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033885">
        <property type="entry name" value="AlkB/XylM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005804">
        <property type="entry name" value="FA_desaturase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024934">
        <property type="entry name" value="Rubredoxin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024935">
        <property type="entry name" value="Rubredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018527">
        <property type="entry name" value="Rubredoxin_Fe_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38674">
        <property type="entry name" value="PTHR38674"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00487">
        <property type="entry name" value="FA_desaturase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00301">
        <property type="entry name" value="Rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00202">
        <property type="entry name" value="RUBREDOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50903">
        <property type="entry name" value="RUBREDOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0249">Electron transport</keyword>
    <keyword evidence="11" id="KW-0408">Iron</keyword>
    <keyword evidence="13" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12 15" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="12 15" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="22"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="47"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="91"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="118"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="231"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="262"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="domain" description="Rubredoxin-like" evidence="14">
        <location>
            <begin position="423"/>
            <end position="475"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC53239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="487" mass="54742" checksum="F5163692C98C667B" modified="2016-01-20" version="1">MAKYATQGADGTVVAWRDKKRYLWILGLVVPLTPIVGIALFEATGEALFFWLTPVVFFGLIPLIDLVAGYDNTNPPDDVIDALENDRFYRWVTYLYLPVQYGGFVASIWYLATTDMSVLAKVGLAISVGVVGGVAINTAHELGHKRESLERWASKIALAQTFYGHFYIEHNRGHHVRVATPEDPASARMGESVYRFWPRTVSGSLKSSWELEAKRYQRKGTHPFHLGNDVLNAWLMTVALWGGLMLWLGLAHDVNPLSLLPYLVLQAVVGFSLLEVVNYMEHYGMVRQKVGTPGKMRYERVTPAHSWNSNNIATNVLLYHLQRHSDHHANPTRRYQTLRDFKDAPVLPTGYTGMIVVAMFPPAFRALMDKRVLAHYDGDLRLANLHPAKREKLLRKYPVPAELRSLEAELRADSSAHEFEGEVLAAQCPGCQYTYEVAEGNELEGFAAGTAWKDIPDDWCCPDCGVREKVDFKAVEPRRLDVSKVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJN7</accession>
    <name>A0A0Q8VJN7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08255</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917948.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54050">
        <property type="protein sequence ID" value="KRC54050"/>
        <property type="gene ID" value="ASE19_08255"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025723">
        <property type="entry name" value="Anion-transp_ATPase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016300">
        <property type="entry name" value="ATPase_ArsA/GET3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10803">
        <property type="entry name" value="PTHR10803"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02374">
        <property type="entry name" value="ArsA_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ArsA_ATPase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="322" mass="33955" checksum="F2BCD7944F944FBD" modified="2016-01-20" version="1">MVTGKGGTGKSTVASALALALAGRGKNVLLCEVEGRQGIARMFDVDPLPYQERRLTTGLPDADGGRGVVHALHIDAESALLEYLSMYYRLGRAGKALDRFGVIEFATTIAPGVRDVLLTGKVYEAVQRNSRNKNAIDYDAVVLDAPPTGRITQFLNVSNELAGLAKVGPIKSQSDTMMTLFRSPRTAVHLVTVLEEMPVQETADGIAELRSAGLPVGGVVVNLVRPRDLSAEQLTAARAGSLDRGALEADLAAGGIDVSADLVDGLLQEAADHAERRALEDSQRALVADLGVPSYELPQMAGGIDLGGLYELAGLLREQGMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK44</accession>
    <name>A0A0Q8VK44_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mucin-5AC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23360</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893908.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57702">
        <property type="protein sequence ID" value="KRC57702"/>
        <property type="gene ID" value="ASE19_23360"/>
    </dbReference>
    <dbReference type="OrthoDB" id="322004at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="339"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="522" mass="56927" checksum="93EAE0FE5FC15652" modified="2016-01-20" version="1">MSTVVSDDGILLPAASRPFLVEIDGHYVWSLTPERDGVRQLGGVLVPWPGVLRPYLSGRGRVRVTDTTGAEVLYDAEVGLGAGDGPLAVVDRAGNRLCVDKVGHLTRSFEATAEEVREEIMAGTRRAIDDLREHAGVKAYLNYGALLGAIREGRMLAHDSDTDLCYLSDHTSPADIITESYRISRAMRARGWNLLRMSGGDIKLLLPLSDGRLCHIDVFVAFHVGDTFFQLGNRSGDLPRSAIEPFSTIELHGHEFPAPRDPEAMLAFLYGLDWRTPDPSFRYADPPAGVRRLDGWLRGFRAEMGLWTGFVTGPDVRSVPRGPSPFARWVAPQLGELPVLDVGTGTGRDALWFARRGHRTGAVDFSRAAVTMVRRKAARHGVDVDADQLILGELRSTLLHGTRLARDPHHLYARQLIGCLDDPALDQLWRLARMALRPGGGRLFLEFSATHDGPDGAAGTPLAPEGLVRRVDPARVQAAIEAAGGVVEELVVVPGEDLLGGDDPAICRIRAAWPARNTKDDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL77</accession>
    <name>A0A0Q8VL77_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cobalt ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_05700</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894134.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54944">
        <property type="protein sequence ID" value="KRC54944"/>
        <property type="gene ID" value="ASE19_05700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1505747at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003339">
        <property type="entry name" value="ABC/ECF_trnsptr_transmembrane"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02361">
        <property type="entry name" value="CbiQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="58"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="119"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="235"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="259"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="299"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="328"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="366" mass="39085" checksum="59A5C03F2738C502" modified="2016-01-20" version="1">MRIPRDLHPVAWWVWALGLAVGASFTTNPFLLALLLGSITLTVLTCRTDQPWARSFRLYVWLGVVLVAVRILFRILLGGNAPGHVLFTLPTIGLPDWVAGIELLGPFTREELLAATYEGFRLSTLLIAVGAANALANPKRLMKSLPPALYEIGTAMTVAINVLPQLADSAVRVRAAQQLRGGPEGRLRRVRGVQRLLVPVLEDAFDRSLALAAGMDARGYGRSGDATPVQRRTTGTLMIAGLIGVAVGVYAVLDATAPRLLALPMLAVGTAVALAGFVSAGRRVDRTRYRPDRWRVPEVVVALSGVACGFGLWAVNRWDLDVAHPGVLAVPTVTLPALAAVLVAVVPVWVAPPPLTARSREQVALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL82</accession>
    <name>A0A0Q8VL82_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_05795</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894115.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54961">
        <property type="protein sequence ID" value="KRC54961"/>
        <property type="gene ID" value="ASE19_05795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="7548at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002543">
        <property type="entry name" value="FtsK_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032030">
        <property type="entry name" value="YscD_cytoplasmic_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01580">
        <property type="entry name" value="FtsK_SpoIIIE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16697">
        <property type="entry name" value="Yop-YscD_cpl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00240">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50901">
        <property type="entry name" value="FTSK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="239"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="264"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="FHA" evidence="6">
        <location>
            <begin position="120"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="domain" description="FtsK" evidence="7">
        <location>
            <begin position="695"/>
            <end position="883"/>
        </location>
    </feature>
    <feature type="domain" description="FtsK" evidence="7">
        <location>
            <begin position="1020"/>
            <end position="1212"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="493"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="713"/>
            <end position="720"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="1037"/>
            <end position="1044"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC54961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1493" mass="157946" checksum="C02B1CC87EE64F6A" modified="2016-01-20" version="1">MKLKLIYDRAGERPSDIVVTTDAAATVGDVALAIAGADPVRPSFVGADLTLSVAPGGRHDFTTLDPERPIGDAPVASGFAVRLVSVASSPVGARSDAVLVVKVTAGPDKGKEFPLGAGSFLIGRDGTCDVVLGDRLVSKRHARLDIGSVIELVDQNSANGLLVDGGLVPRLTVQAGQTVTLGDTVLSFVRTERFAAADLGGRIQGGSVPFNRSPKVEARFPGREFARPEVPKELDHQPFPWLMMIAPVVMGVAMYAVTKRPVTLLFIAMTPMMMIANYMMGRQSNKRKLQQAVDRFEGQLAALDEALDADRPREQKVRNAEAPSVAEILAAGAGRGPLLFTRRREHWNFLHLRLGVGAVESRNTVAPAGRIDDGLVEFTERLDEVTRRHHLVSDVPVNEDPLLAGAVGIVGGHALGAAAARAMLVQLTGLHSPAELVVTAMAGPQTATEFEWLKWLPHTSSPHSPLSASPLADSAATVSRLLSELEGLVAGRSRSTELSEADLRPPLPAGLAATQGGAHVGEDGAEQSKPALPVVVVLVSADAPMDQGRVVQLAERAAAAGIVVLWLAPEVAALPAVCRTHLDVTGGLGSAAVRFVRHGQDVVDVVTDGVSREEALQFALSLSALVDAGAVVADSSDLPRTVNLLTLIGPEMAEASHAVVDRWRQNDSIHDRSGAPPVPSRRTRTLRALVGQAGVDAMHLDLRMQGPHALVGGTTGAGKSEFLQAWVLGMAAEHSPDRLTFLFVDYKGGAAFADCVKLPHCVGLVTDLSPHLVRRALTSLRAELRHREHLLNRKKAKDLIDLEKRGDVECPPALVLVIDEFAALVSDVPDFVDGVVDIAQRGRSLGIHLIMATQRPAGVIKDNLRANTNLRVALRMADESDSSDVVGTVEAAGFDPSIPGRGLAKTGPGRLVPFQSAYAGGWTRSEPDQHEVLVHELRFGAEVEWRAPDEQVEEPADPGPTDQARLVAQIAAAAQAAGVPEPRRPWLNELGRICDLVRLGPRNDRQLVLGEVDRPEEQRQDTAYFYPDSDGNLAIYGTGGSGKSVVLRTLAAAAGVTPRGGPVNVYALDFAAGGLRMLEALPHVGAVISGDDHERVGRLLRQLKAELDERARRYPAVNAGTVAEYRVAAQRPDEPRILLLVDGFPAFREAYEAGGSTRAPLYAIFNQLLSEGRQLGVHVVFTADRPGSVPGSVSSSVPRKVVLRLADETAYTILEVPPDVLSPASPPGRAVIDGYEGQIAILGGSGNVADQSAAVTALATAIRGTGRPDVPPVASLPTEYSAADLPPTVGALPVLGIEDEGLTLIGFDPVGTFLLGGGPGSGRSNALAVMVGSLRRARPDMRLHYLGNRRSALVGSQPWSASAATLDEVVDLAKQLSGELAASDDPPSAVVIEGLADFQSTPADAAIVELVKTIRRSGHFVLAESETSTWGSSWPIFGEIKAGRRGLLLQPDAIEGDTILRTSFPRVSRSEFPVGRGFLVQGGRAVRVQLPIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMQ8</accession>
    <name>A0A0Q8VMQ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56819">
        <property type="protein sequence ID" value="KRC56819"/>
        <property type="gene ID" value="ASE19_03125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002793">
        <property type="entry name" value="Endonuclease_NucS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38814">
        <property type="entry name" value="PTHR38814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01939">
        <property type="entry name" value="NucS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="23036" checksum="DDDEFD2B93EC1F5D" modified="2016-01-20" version="1">MATRVLMIKADGSVLVHSDGGSYKPLNWMSPPCTVREGTTDDGQVEWTVTAKAAKGATPDTLRILVEEILHDSEHDLGIDPGLQKDGVEKHLQELLAEHPSTLATGLSLVRREFPTAIGPVDLMCRDESGLSVAVEIKRRGEIDGVEQLTRYLELLNRDPLLTGKGAVRGIFAAQEIKPQARVLAEDRGITCAVVDYDALRGLDNVEDRLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMS3</accession>
    <name>A0A0Q8VMS3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03230</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892853.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56835">
        <property type="protein sequence ID" value="KRC56835"/>
        <property type="gene ID" value="ASE19_03230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2073672at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="81" mass="8776" checksum="1D4149EE7A3494B7" modified="2016-01-20" version="1">MSQPEEKPKGDPWHAFGYIVAGVAFYGFAGWLLDRWLGTTFLVAVGILAGAALGIFQTAARFRVDPPEPPNSPKPDSTDEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN88</accession>
    <name>A0A0Q8VN88_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_23160</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892528.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58958">
        <property type="protein sequence ID" value="KRC58958"/>
        <property type="gene ID" value="ASE19_23160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="25"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="209"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="351"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="473"/>
            <end position="564"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="579"/>
            <end position="725"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC58958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="735" mass="79274" checksum="F9AF0F8566BA4144" modified="2016-01-20" version="1">MRSRLEHVTVCIVDAESNNEAGEAVRAVVAEVLERESDAREWAAWAAAGLTALPVPEEHGGEGLGLTEVAVLLREAGRHAVQVPAWETLCCGALTLASYGTEVQRKDLLPGIATGELVVTPALRGDAVYDGSRVTGRKLAVTHVEAAHRLLVVATEGDREVVVLVDPRGEGVELLPSSASSAAPQHTVVLDGAPAEVLEDGAAARLRDLARAGLAVTAAGVLCGARDLTAGYVKGRQQFGRALAEFQAVSLQMADVYVASRTLDLAADNAVWRVAEGLPAAEDLAVAGYWASQVAPYAFRTCHHLHGGMGVDITYPLVGFTTWGTDLAHALDTTAAQVPVESRDAKNLELTAEQRDLKDRLRAYFGGVAAQYEGLHDPDPVEGAWDRHGPTYSRLIRQLGTDGWMGVGWPKEYGGHGLGEIEQTIFANEAQYADVHLPSVTLQTVGPTLIRYGTQKQKDLFLERILKGDVHFAIGYSEPDAGTDLASLRTTARRDGDHYVVNGQKMWTTGGHHADYLWLAVRTDPDAPKHKGISILIVDTSDPGYSWTPIITADGSHHVNATYFNDVRVPVDMLVGEENQGWKLITTQLNHERVMLGPAGRIEGLRDRVIRWADAAGVRDEPDVRDLLGKTTAVFRINELLNWEVARAAASGELQVADASSSKVFASDQVQHLLADLVSLVHRHGDPGDPATRDLLDYLDGQAKRNLVITFGGGVQEVQRELISMFGLGLPRVPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNV0</accession>
    <name>A0A0Q8VNV0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">6,7-dimethyl-8-ribityllumazine synthase</fullName>
            <shortName evidence="7">DMRL synthase</shortName>
            <shortName evidence="7">LS</shortName>
            <shortName evidence="7">Lumazine synthase</shortName>
            <ecNumber evidence="4 7">2.5.1.78</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ribH</name>
        <name evidence="8" type="ORF">ASE19_23210</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>(2S)-2-hydroxy-3-oxobutyl phosphate + 5-amino-6-(D-ribitylamino)uracil = 6,7-dimethyl-8-(1-D-ribityl)lumazine + H(+) + 2 H2O + phosphate</text>
            <dbReference type="Rhea" id="RHEA:26152"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58201"/>
            <dbReference type="ChEBI" id="CHEBI:58830"/>
            <dbReference type="EC" id="2.5.1.78"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Cofactor biosynthesis; riboflavin biosynthesis; riboflavin from 2-hydroxy-3-oxobutyl phosphate and 5-amino-6-(D-ribitylamino)uracil: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the DMRL synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.78" evidence="4 7"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892520.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58966">
        <property type="protein sequence ID" value="KRC58966"/>
        <property type="gene ID" value="ASE19_23210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1680292at2"/>
    <dbReference type="UniPathway" id="UPA00275">
        <property type="reaction ID" value="UER00404"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009349">
        <property type="term" value="C:riboflavin synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000906">
        <property type="term" value="F:6,7-dimethyl-8-ribityllumazine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09209">
        <property type="entry name" value="Lumazine_synthase-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.960">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00178">
        <property type="entry name" value="Lumazine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034964">
        <property type="entry name" value="LS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002180">
        <property type="entry name" value="LS/RS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036467">
        <property type="entry name" value="LS/RS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21058">
        <property type="entry name" value="PTHR21058"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00885">
        <property type="entry name" value="DMRL_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52121">
        <property type="entry name" value="SSF52121"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00114">
        <property type="entry name" value="lumazine-synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0686">Riboflavin biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="5-amino-6-(D-ribitylamino)uracil binding" evidence="7">
        <location>
            <begin position="58"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="5-amino-6-(D-ribitylamino)uracil binding" evidence="7">
        <location>
            <begin position="80"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="1-deoxy-L-glycero-tetrulose 4-phosphate binding" evidence="7">
        <location>
            <begin position="85"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="26"/>
        </location>
        <ligand>
            <name>5-amino-6-(D-ribitylamino)uracil</name>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>5-amino-6-(D-ribitylamino)uracil</name>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>(2S)-2-hydroxy-3-oxobutyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58830"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007424"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC58966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="16809" checksum="DDFD12B9F98CC1AA" modified="2016-01-20" version="1">MAGHGAPDIAPVDCHDLRVAVVAASWHSVVMDGLIAGAQRAFADHKLEAPVVVRVPGVFELPVTAAALAPSYDAVIALGVVIRGGTPHFDYVCNAATDGLTRVSLDHHTPVGFGVLTCDNEEQALDRAGLEGSHEDKGYEAASAALQTAATLKKVRSRGYTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQD5</accession>
    <name>A0A0Q8VQD5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01070</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896695.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59646">
        <property type="protein sequence ID" value="KRC59646"/>
        <property type="gene ID" value="ASE19_01070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1306955at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008703">
        <property type="term" value="F:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002734">
        <property type="entry name" value="RibDG_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01872">
        <property type="entry name" value="RibD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="SSF53597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RibD_C" evidence="1">
        <location>
            <begin position="4"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="20275" checksum="0C5922C45A2EB6FE" modified="2016-01-20" version="1">MTRVVYYTATTLDGFLADPDDSLAWLLRQDLDESGPQNYGAFITTVGALVMGSTTYEWVLAHLEETGEPWYYQQPSWVMTTRELPVPEGADVRFAQGDVAALHDELRAAAGDKDIWVVGGGDLAGQLAEAGLLDEVIVSIAPVVLGAGRPLLPRRLDLRLVETARNGAFVTARYELDGPLLEDREA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRG1</accession>
    <name>A0A0Q8VRG1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893009.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56992">
        <property type="protein sequence ID" value="KRC56992"/>
        <property type="gene ID" value="ASE19_04110"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="172"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="196" mass="20261" checksum="B96D52FC980B4767" modified="2016-01-20" version="1">MDQLVQRRGAGETRWTMLLVALLLAATAYGGYRAVSSMNAIHDPAALGGDAPATLRLGDARVEVVAAEEVVGVAGSDLMGGMGHNISGWVKADQMMVQVWLRVSTGDRPGDYDPTQLRAYATGSPTPILPASGSLGTGTLTPHSMVEGSVSFVVPRTETRLSLSSTTSGYSIDIPAVAGSPAPAVTPAPGDDEHHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRK3</accession>
    <name>A0A0Q8VRK3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01980</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892643.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56626">
        <property type="protein sequence ID" value="KRC56626"/>
        <property type="gene ID" value="ASE19_01980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1593423at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021424">
        <property type="entry name" value="PorA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11271">
        <property type="entry name" value="PorA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360307" evidence="2">
        <location>
            <begin position="28"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="299"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="339" mass="36759" checksum="49E7320734CEB405" modified="2016-01-20" version="1">MRSKLAAVAIGLGVFMIVAAVLVRAYAYPTLATVPADYKGTTYLEAKGAQVLDWESIQKPGPLVSETHDLAIQSFTIADTGAKAPDGVVVWVNSTTVMQDDGTQFQRTQERAPFDGVSGAAVDCASCESWTSDTAVYDGQERVETPLERQGQVYKFPFGTEKKSYDVWDGTLGEATPAKFEGTEKVDGLEVYKFVQTIEPTMVGTQELSGTKFGAADPANVEAELWYSMTRTFYVEPQTGSPVNRTEERMQELRYDGVAVPVFNGTVQYTAQQVKDLVNGTKDQTGAKDNAMLLGGLRLLFPLLLVLVGAALLVGGLFLGRKARSERDVKADEKPLVNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTZ6</accession>
    <name>A0A0Q8VTZ6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">INTRADIOL_DIOXYGENAS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_23340</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the intradiol ring-cleavage dioxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893904.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57698">
        <property type="protein sequence ID" value="KRC57698"/>
        <property type="gene ID" value="ASE19_23340"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1456634at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008199">
        <property type="term" value="F:ferric iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006725">
        <property type="term" value="P:cellular aromatic compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000627">
        <property type="entry name" value="Intradiol_dOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015889">
        <property type="entry name" value="Intradiol_dOase_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00775">
        <property type="entry name" value="Dioxygenase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49482">
        <property type="entry name" value="SSF49482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="INTRADIOL_DIOXYGENAS" evidence="5">
        <location>
            <begin position="129"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="46"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="93"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="46"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC57698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="296" mass="30556" checksum="94A07813B986A10D" modified="2016-01-20" version="1">MSHHADETEEHDLGLSHDLPKFMARRGLLGILGGAGAAAALTACGSDDTTAASSGTPSSSTTAAAPGPGGNPPDGGGAMGADAGVEVAEGEIPEETAGPYPGDGSNGPNVLTESGIVRSDLTSSFGSGSGVAEGVATTVKLKVYDLNGETVTPLAGAAVYLWHCDREGRYSMYDDEIADENYLRGVQEADDDGNLTFTTIFPACYSGRWPHMHFEVYESLAKATSAENKLRTSQLALPEDVCNDVYATDGYEQSVSNLAQVALDSDGIFSDGYSLQLAKVTGSVSEGYTVTLNVPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUK5</accession>
    <name>A0A0Q8VUK5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NodB homology domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03040</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56807">
        <property type="protein sequence ID" value="KRC56807"/>
        <property type="gene ID" value="ASE19_03040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2030">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038081">
        <property type="entry name" value="CalX-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002509">
        <property type="entry name" value="NODB_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01522">
        <property type="entry name" value="Polysacc_deac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141072">
        <property type="entry name" value="SSF141072"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51677">
        <property type="entry name" value="NODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NodB homology" evidence="1">
        <location>
            <begin position="43"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="361" mass="38517" checksum="7CC4BB7860B5FD87" modified="2016-01-20" version="1">MLALVLGVGGTPPGASDDSDAPAAVLASSPRDRAEVSARRCTGRVALTFDDGPAVGTTLRLVRILRREKVTATFFVVGQHVRAHPELVRAIERSGLLIGNHSWAHEQLTARSDREIRDSIRGTDRVLRRAGVHPTHLLRPPYGAMNDRVRADIVRLGYRPVLWTIDSRDWANGTAPQIAGRILRALHPGNNIVLQHDGVTRSPISVDAVTRVIRTARRRGYCFTGLDERGLPGFPSPLASVSVRQGAEGGFAVATVRLDRMAGRRTAVTLSVRSGSATVGTDLADVRTRVVIPAGRLTASVRIPILADGLAEPVERAAVDISAPSGVRIGRGTASLVIGAVMAARTGRWSPVRPLPSPAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVV8</accession>
    <name>A0A0Q8VVV8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Thymidylate kinase</fullName>
            <ecNumber evidence="3">2.7.4.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">dTMP kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">tmk</name>
        <name evidence="5" type="ORF">ASE19_23885</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>ATP + dTMP = ADP + dTDP</text>
            <dbReference type="Rhea" id="RHEA:13517"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58369"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.9"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the thymidylate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.9" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894001.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57367">
        <property type="protein sequence ID" value="KRC57367"/>
        <property type="gene ID" value="ASE19_23885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1585072at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004798">
        <property type="term" value="F:thymidylate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006233">
        <property type="term" value="P:dTDP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006235">
        <property type="term" value="P:dTTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00165">
        <property type="entry name" value="Thymidylate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039430">
        <property type="entry name" value="Thymidylate_kin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018095">
        <property type="entry name" value="Thymidylate_kin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018094">
        <property type="entry name" value="Thymidylate_kinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02223">
        <property type="entry name" value="Thymidylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00041">
        <property type="entry name" value="DTMP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01331">
        <property type="entry name" value="THYMIDYLATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thymidylate_kin" evidence="4">
        <location>
            <begin position="17"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="19"/>
            <end position="26"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC57367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="217" mass="23744" checksum="06DDC096DE71EEE0" modified="2016-01-20" version="1">MTTTPGQYADTGVFVCFEGGEGGGKSTQSRLLRDRLEAEGYGVVLTFEPGDTPVGKEMRRIVLSPETGELAHKTEFLLYLADKSEHVETLVRPALARGEVVVTDRYVDSTLAYQGAGRALEVAELEQVARWATGDLRPHLTVVLDVEPSAGLARFEGRDRIEGESLAFHQRVQLAFLDLAAQDPDHYLVVDARASIEEIAAAIAARVEPLLDRAVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VX22</accession>
    <name>A0A0Q8VX22_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PAS domain-containing sensor histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23270</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58976">
        <property type="protein sequence ID" value="KRC58976"/>
        <property type="gene ID" value="ASE19_23270"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Histidine kinase" evidence="2">
        <location>
            <begin position="132"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="344" mass="36915" checksum="1579BE5C71220AE1" modified="2016-01-20" version="1">MTEHPDHLDLLPDGVVVADAEGTVTAINAVAAGMLDAGPPAQVVGRPLAEVLALTDHDGQAWTDANAPYDGLPTRKAVPEQAWLLPDGTEVLVTARLHRPVRIGPVASVAISLRSGRGRARLDRDRSDLVATLAHELRSPLTGVKGFVQALLARWDKLTDEQKKLMLTTASADADRLSRLITELLDVARIDTGRLQLHRRPTDVVKKVLRVQESISVATSTPVEVDAEADLPLIDADPDKVIQVVTNLVENAVRHGSGPVRIHVGRWADDPSYVAVTVTDEGEGIPEELRKRIFTKFWTGSARSGSGLGLYIVRGLVKAHGGTVTVDDRPGGGARVLTAWPQAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYT9</accession>
    <name>A0A0Q8VYT9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00235</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59506">
        <property type="protein sequence ID" value="KRC59506"/>
        <property type="gene ID" value="ASE19_00235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1458261at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360505" evidence="1">
        <location>
            <begin position="30"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="379" mass="38403" checksum="A1DB54E28FBFDD15" modified="2016-01-20" version="1">MKLNKYVGGSIAALAAAAIAVGSVLPAQADPTRPYAAAGSDTIQDVWNALTNDGAASPFGDIASYDAFDGSGVAADTVMIKPKTLAPWVTRPSGSGDGVKSLSASWNSANHIFKTKDLFTSSAIDFARSSGGPSVSGSALTFIPFARDAVSIAFNPTTGLTSLDLTTAQIKELYSGVDDSANSVVTFVSGQPQINGVAVHPKLPQAASGTRKFFLAAAGVTALASYVDGAATFGENNGTFIPNDGDLVPFSAGQWIAQANGQIPGLENTTTGLALAAINGQAAVNGTAPTITPGALYGTATLGNYTAPPATGVGAFSRDTYDVIPTQFLSGTPKQANLVAALTSGLNGASQKTTIKKYGFGTLSYLTDASKYLSSAYTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMV1</accession>
    <name>A0A0Q8UMV1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ATP-dependent Clp protease ATP-binding subunit ClpX</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">clpX</name>
        <name evidence="9" type="ORF">ASE19_21040</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Component of the ClpX-ClpP complex. Forms a hexameric ring that, in the presence of ATP, binds to fourteen ClpP subunits assembled into a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the ClpX chaperone family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896097.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46326">
        <property type="protein sequence ID" value="KRC46326"/>
        <property type="gene ID" value="ASE19_21040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="718259at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00175">
        <property type="entry name" value="ClpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004487">
        <property type="entry name" value="Clp_protease_ATP-bd_su_ClpX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046425">
        <property type="entry name" value="ClpX_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010603">
        <property type="entry name" value="Znf_CppX_C4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038366">
        <property type="entry name" value="Znf_CppX_C4_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06689">
        <property type="entry name" value="zf-C4_ClpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00994">
        <property type="entry name" value="zf-C4_ClpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00382">
        <property type="entry name" value="clpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51902">
        <property type="entry name" value="CLPX_ZB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6 7" id="KW-0143">Chaperone</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="ClpX-type ZB" evidence="8">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="125"/>
            <end position="132"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="426" mass="46306" checksum="D610458E65E3C2D9" modified="2016-01-20" version="1">MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAEGSDVDLAELPKPKEIFEFLNSYVIGQEQAKKSLAVAVYNHYKRVQAGVQPVSGKHSKDEVVEVAKSNILVIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKAENPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIQIDTTNILFVVGGAFAGLEHIIEQRVGKKSLGFTAEPRGEAERAADDLLSQVRPEDLTKFGLIPEFIGRLPLIASVTPLDQAALVQILTEPRNALTKQYKKLFDLDGVELEFTDDAIAAIADKALERGTGARGLRAIIEEVLLYVMYDVPSRGDVEKVVVTREVVDDEQAPTLVLREAKPKKKSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN61</accession>
    <name>A0A0Q8UN61_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF2510 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21585</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896194.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46424">
        <property type="protein sequence ID" value="KRC46424"/>
        <property type="gene ID" value="ASE19_21585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1063432at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002838">
        <property type="entry name" value="AIM24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036983">
        <property type="entry name" value="AIM24_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018929">
        <property type="entry name" value="DUF2510"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016031">
        <property type="entry name" value="Trp_RNA-bd_attenuator-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01987">
        <property type="entry name" value="AIM24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10708">
        <property type="entry name" value="DUF2510"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51219">
        <property type="entry name" value="SSF51219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2510" evidence="2">
        <location>
            <begin position="4"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="344" mass="36020" checksum="79E8AD44D04088DA" modified="2016-01-20" version="1">MTAAAWHPDPTGRHELRYWDGNQWTDHVSDQGVQSTSPLNAEAAASEATSAESTDTSSYDGGTSALDATTSVAQPAATEQAWSPQPTQQPAQQSQPPAQPPAYAPQAQQGYGQQQVPADAFAGISGELIDGRFTEVDGSGAILQNKKLLRVRITEPFMAKQGAMVAYQGNVNFNYQGGGAAKFLKKAFTGEGLSLMRVEGQGDVFLADSSHDVHILQLNNSGLSVNGKNVLAFSAALDWNIERVKGGSIAAGGLFNTTLRGTGWVAITTDGPPVVLNPGEAATFADAQALVAWSVHLQTSIRSTFTAGSLIGRGSGEAFQVAFQGQGFVIVQPSEGAEVPPHTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNC7</accession>
    <name>A0A0Q8UNC7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">4HBT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21995</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896262.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46492">
        <property type="protein sequence ID" value="KRC46492"/>
        <property type="gene ID" value="ASE19_21995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1814691at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="123"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="212" mass="22313" checksum="9769FBBE186AF964" modified="2016-01-20" version="1">MSLSFIHDETPTEEVDRREAVVAGLADSVRALVDATIRTTVDDDEVRAVQAEVAALTERLRAAQLPGPAGVRYNSEGRSWSWGNAVVGSSNAVAPPLEIQHAGDGRTSYAEVVLGAAYEGPPGMVHGGVSALLLDQVMGETASANNSRIAMTGTLTLRYRHPLPLGSVRLDCQVTKEADGKITVQATIGETAPDATPAVEASGLFVVPRWAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNF2</accession>
    <name>A0A0Q8UNF2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22180</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896291.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46523">
        <property type="protein sequence ID" value="KRC46523"/>
        <property type="gene ID" value="ASE19_22180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1338660at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="135"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="169"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="199"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="228"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="253"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="340" mass="34908" checksum="21344CC5752BBF69" modified="2016-01-20" version="1">MSQPSEPAVERRHVVRVGLGLLVPGVVLLVAGRPELIVYAVFGSFTGMYGRREGPAERLRHQFHGAGMLVTGVALGVTFSQREAPTAALVVGVTLFATVGSLLTDRLRLHPGGPFFGIFAFGATATIGADLVDPFVAVGICVATAAWCLALGLSGLAPGEQPAGVPQEPLLGTLVHALRYAVAIAGAGAVGLALGLDHANWAMAAAAVPLAVVVGGEPLDLRAVLDRAAHRVAGTFAGLAVTAAVLLPEPRPAVLAVVVMVLLFPTELFMSRHYGLALGFFTPLIMLMTELAAPSDPSSLLLARGVDTVVGVVVGVAAAARIPGRRPSGTAQERIAQWAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNK5</accession>
    <name>A0A0Q8UNK5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Phosphoribosylglycinamide formyltransferase</fullName>
            <ecNumber evidence="3">2.1.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">5'-phosphoribosylglycinamide transformylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">GAR transformylase</fullName>
            <shortName evidence="3">GART</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">purN</name>
        <name evidence="5" type="ORF">ASE19_22330</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the transfer of a formyl group from 10-formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>(6S)-10-formyltetrahydrofolate + N(1)-(5-phospho-beta-D-ribosyl)glycinamide = (6S)-5,6,7,8-tetrahydrofolate + H(+) + N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamide</text>
            <dbReference type="Rhea" id="RHEA:15053"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:143788"/>
            <dbReference type="ChEBI" id="CHEBI:147286"/>
            <dbReference type="EC" id="2.1.2.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 3">Purine metabolism; IMP biosynthesis via de novo pathway; N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide from N(1)-(5-phospho-D-ribosyl)glycinamide (10-formyl THF route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the GART family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.2" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896316.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46548">
        <property type="protein sequence ID" value="KRC46548"/>
        <property type="gene ID" value="ASE19_22330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1815747at2"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00126"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004644">
        <property type="term" value="F:phosphoribosylglycinamide formyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08645">
        <property type="entry name" value="FMT_core_GART"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01930">
        <property type="entry name" value="PurN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002376">
        <property type="entry name" value="Formyl_transf_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036477">
        <property type="entry name" value="Formyl_transf_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004607">
        <property type="entry name" value="GART"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001555">
        <property type="entry name" value="GART_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00551">
        <property type="entry name" value="Formyl_trans_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53328">
        <property type="entry name" value="SSF53328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00639">
        <property type="entry name" value="PurN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00373">
        <property type="entry name" value="GART"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Formyl_trans_N" evidence="4">
        <location>
            <begin position="4"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="region of interest" description="5'-phosphoribosylglycinamide binding" evidence="3">
        <location>
            <begin position="13"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="region of interest" description="10-formyltetrahydrofolate binding" evidence="3">
        <location>
            <begin position="91"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="3">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>(6S)-10-formyltetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>(6S)-10-formyltetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
        </ligand>
    </feature>
    <feature type="site" description="Raises pKa of active site His" evidence="3">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="202" mass="21342" checksum="B7EC98E27D2C5B00" modified="2016-01-20" version="1">MTARLVVLVSGSGTNLQAILDAAADPSYGARVVAVGADRDDIEGLRRAERAGIPTFVAKVGDHTSREYWDRALADKVGAFEPDLVVLAGFMKLVGDKFLARFGGVTLNTHPALSPSFPGMHGPRDALEYGVKVTGATLFVVDAGVDTGAIVAQAVVPVEDDDSVETLHERIKVAERAMLVESVGRMAREGFAVDGRRVRLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNV5</accession>
    <name>A0A0Q8UNV5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21170</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896398.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46629">
        <property type="protein sequence ID" value="KRC46629"/>
        <property type="gene ID" value="ASE19_21170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009351">
        <property type="entry name" value="YcaQ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06224">
        <property type="entry name" value="HTH_42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="395" mass="42730" checksum="DD77FC558948C9C7" modified="2016-01-20" version="1">MVEFSDDVRRRRLAVRHGLARPHDGVEAATRAMTVLHATEAATVHLALRARVEGVTVADVDRALYDERSLVKQLAVRRTLFVLPRDLLPAAWGSAARRVAVQQRALMVKDLVAGGVADPEAWLATAEADVLGLLGDGTPRTTAEVRQQVASLAGTVQRGTPGSRWAAEVPLAPRVMTLLGAEGRIVRAANAGHWRLNKPAWTTTEQWLGEVPEPLDEAAGYAELVRRWLATFGPGTEADVVWWLGATKTAVRRALADVGAVEVELADGSGWVLPDDTTPLSPAEAAVEPWAALLPTLDPTVMGWKERSFYLDAADTPYLFDSNGNAGNTAWYDGRIVGCWVQDDDARVHLVLSDDVPAAGRSLLEEQAARLTAWLDGTRITNVYASPQMRGARLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8USE3</accession>
    <name>A0A0Q8USE3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Succinate--CoA ligase [ADP-forming] subunit beta</fullName>
            <ecNumber evidence="6">6.2.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Succinyl-CoA synthetase subunit beta</fullName>
            <shortName evidence="6">SCS-beta</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">sucC</name>
        <name evidence="9" type="ORF">ASE19_22360</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>ATP + CoA + succinate = ADP + phosphate + succinyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:17661"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.2.1.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Heterotetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the succinate/malate CoA ligase beta subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.5" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896321.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46553">
        <property type="protein sequence ID" value="KRC46553"/>
        <property type="gene ID" value="ASE19_22360"/>
    </dbReference>
    <dbReference type="OrthoDB" id="316012at2"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004775">
        <property type="term" value="F:succinate-CoA ligase (ADP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00558">
        <property type="entry name" value="Succ_CoA_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013650">
        <property type="entry name" value="ATP-grasp_succ-CoA_synth-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005811">
        <property type="entry name" value="CoA_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017866">
        <property type="entry name" value="Succ-CoA_synthase_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005809">
        <property type="entry name" value="Succ_CoA_synthase_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11815">
        <property type="entry name" value="PTHR11815"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08442">
        <property type="entry name" value="ATP-grasp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00549">
        <property type="entry name" value="Ligase_CoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001554">
        <property type="entry name" value="SucCS_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01016">
        <property type="entry name" value="sucCoAbeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01217">
        <property type="entry name" value="SUCCINYL_COA_LIG_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 6" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 6 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 6" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="ATP-grasp" evidence="8">
        <location>
            <begin position="9"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding; shared with subunit alpha" evidence="6">
        <location>
            <begin position="319"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="52"/>
            <end position="54"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="257"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared with subunit alpha</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="388" mass="40987" checksum="F04023DAA5E862E0" modified="2016-01-20" version="1">MDLMEYQAKELFAKHGVTTTIGVVVETAEEAKAAAEKIGGVTVIKAQVKAGGRGKAGGVKLAKTPDEAFQYATDILNLTIKDLPVNRVLVTPATPPEEEYYFSFLLDRSNRQYLCIASVEGGVEIEEVAKTNPDAVKKIAIDPGKGVDAAKAREIATEAGFPEPVFEQAVTMIENLYKVFVEEDATLVEVNPLARLAGDKLEALDGKVSLDENASEVRHPDHAQFEIREEADPLEAKAKDLGLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGENHGGVKPANFLDIGGGANAQVMANGLDVILNDEQVKSVFVNVFGGITACDEVANGIKGALELLGDKATKPLVVRLDGNAVEAGRAILNELNHPLVTQVDTMDGAADKAAELANA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUH2</accession>
    <name>A0A0Q8UUH2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_18160</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893245.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48844">
        <property type="protein sequence ID" value="KRC48844"/>
        <property type="gene ID" value="ASE19_18160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1745184at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039538">
        <property type="entry name" value="BetI_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13977">
        <property type="entry name" value="TetR_C_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0678">Repressor</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="13"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="2">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="193" mass="21711" checksum="414714F33CE7C453" modified="2016-01-20" version="1">MSTTEFRRNRRLGDARERILTEAQALLSERGLADLSLSELGRRLDTSAGHLSYYFGNKDGLLLELLRWCEGAEAEKRAEILATDIPSLDKLEQMCAVYLPRHTGDPRWLVWAELWPRAGREPALKAAQAEYDGAWADDVSSLLEALDFEDVPHLTRGLLALLDGLSIALLIGEEGISPEHVWAQVRRYLQITD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUJ0</accession>
    <name>A0A0Q8UUJ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21935</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056918005.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46483">
        <property type="protein sequence ID" value="KRC46483"/>
        <property type="gene ID" value="ASE19_21935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1843957at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="368"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="459" mass="49569" checksum="B301920F4C9D29B3" modified="2016-01-20" version="1">MTSDPSTAAPAVLLARAEDLVTQRRQVEIQALQVLLAWADVFSGDPQAQPGAVPVRRGGPKLVHPGGDGTPGISDLALDEIAIARCEGVGATRRALADALDLRHRLPLVWAGAQKLECETWVVRRVASLSRKLTREQVRIVDTAVAAALGQAPNRILAIAEAKIIEADTTTHQDRIEDNQQYSGVWYSKPKPGDQIAGVDNAAGVATAFARLDEAHARVHEAFIEQLAVALAEHASPEEQDLGMDHWRAEAFAMSADPVAVVAFWQSLDGTEVVATSGSAAKVVVHLSLTEDDELGPVARVEDLGPRILTQVQGLLAHHAQVTITPVIDLHAGRSVNGYEHPADVKKRSEYRTLGDVFPHATTLFAQSKRSPDHDHTVAYDRHGPPGQTGDHNDTPLTRHSHRAKTHLGYEVHQLGPDRWIWRTPHGLTRLVTGEGTSTISPADYAFLRVQDVAIALAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUP3</accession>
    <name>A0A0Q8UUP3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex</fullName>
            <ecNumber evidence="4">2.3.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_18580</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>(R)-lipoate</name>
            <dbReference type="ChEBI" id="CHEBI:83088"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the 2-oxoacid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.-" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893318.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48917">
        <property type="protein sequence ID" value="KRC48917"/>
        <property type="gene ID" value="ASE19_18580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1626282at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003016">
        <property type="entry name" value="2-oxoA_DH_lipoyl-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001078">
        <property type="entry name" value="2-oxoacid_DH_actylTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014276">
        <property type="entry name" value="2-oxoglutarate_DH_E2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036625">
        <property type="entry name" value="E3-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004167">
        <property type="entry name" value="PSBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00198">
        <property type="entry name" value="2-oxoacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02817">
        <property type="entry name" value="E3_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47005">
        <property type="entry name" value="SSF47005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02927">
        <property type="entry name" value="SucB_Actino"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00189">
        <property type="entry name" value="LIPOYL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51826">
        <property type="entry name" value="PSBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3 4" id="KW-0450">Lipoyl</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="6">
        <location>
            <begin position="2"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="Lipoyl-binding" evidence="6">
        <location>
            <begin position="138"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="domain" description="Peripheral subunit-binding (PSBD)" evidence="7">
        <location>
            <begin position="290"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="81"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="217"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="223"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC48917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="593" mass="59835" checksum="7322C29DF3B0E081" modified="2016-01-20" version="1">MATEVTLPALGESVTEGTVTRWLKQVGDQIAIDEPLLEVSTDKVDTEIPSPVAGTLVEIRANEDDTVEVGAVLAVIGDAGESAGSAPAPAAEEAPAEAAPAPAEEAPAAPAAPAPEAPAAEAPATAPTEAPAASSGPSTAVTLPALGESVTEGTVTRWLKQVGDAVAVDEPLLEVSTDKVDTEIPSPVAGTLLEIKAAEDETVEVGAELAIIGSGTPAAAPAAAPAPAAPAPEPTPVDNAPAPVAAPPAPAAAPAPAAAAPAPAAPAAPAPSPAVAQAAAASVGDEGPGYVTPLVRKLAAQHGVDLGSVQGSGVGGRIRKQDVLDAAAASKAAAPAAPAAPAAAAPAAAAPAAAPSPLRGQTVKVSRLRKIIAERMTESLHISAQLTQVVEVDVTNIARLRESVKEEFLAREGVKLSYLPFFTKAAIDTLKQHPVLNATLDLEAGEITYNDRENVAFAVDTEKGLLTPVVKDAGDLSISGLAKKIADVAERTRTNKIGPDELSGGTFTITNLGSFGALWDTPIINQPQVAILGPGAVVKRPVVIDDEHLGETIAVRHMVYLALTYDHRVVDGADAGRFLRDLKKRLEAGQFEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWB7</accession>
    <name>A0A0Q8UWB7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20515</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896008.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46237">
        <property type="protein sequence ID" value="KRC46237"/>
        <property type="gene ID" value="ASE19_20515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2023468at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="199"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="268"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="297" mass="31547" checksum="9575F9EBD1FD5171" modified="2016-01-20" version="1">MSATLPPPPPPVAGHVPTLDVSGTPRTPFTRLIGVEWRKMLDTRAGVWLLGITAGLLALIAGIVLLIVALADVSPPSANDWLNILTIPVSMLVPVMAITIVTQEWSQRTAMVTFALESSRLRVVLAKLVAVMALGAATILLALVLGLIGNIIGAGLAGTDANWNVTASTFGWAMATQVLYLLMGFGFGLLLLSSPAALALYYVYVWILEGGVIIPGIMYVLWIAFDWGQAILPWFSMRIAMLPFQIGDSDAASLENDLGANLDTGALGLAHVFTSVLIWVGLPLVLGTIRLLRAEVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXU0</accession>
    <name>A0A0Q8UXU0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15660</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893525.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50056">
        <property type="protein sequence ID" value="KRC50056"/>
        <property type="gene ID" value="ASE19_15660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2074164at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="22741" checksum="06BA0F0D37727E8D" modified="2016-01-20" version="1">MSDAPYPPPPPYGQPVPRPPGNGLAVAGLVLGILALLTAPIPLVNFLGLVLALVGAGLGIAGITRGRRVGRRTGMAAWGLGLSAVALVVSTVVGFLTVRYLGDLLDTVDPPDPSASIGEEFETDDGDLRITVTSVGCGSADGADCTFSFDARNTSDRTLYLDNIKVKAVVDGEWVDPSLDGGLTLAPDASATGSGSVWLSGGTLEGLAFDADDASSHSAVVVAVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXV7</accession>
    <name>A0A0Q8UXV7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15780</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893546.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50078">
        <property type="protein sequence ID" value="KRC50078"/>
        <property type="gene ID" value="ASE19_15780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1719670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="15727" checksum="FACC43E1D2F0813E" modified="2016-01-20" version="1">MPSVERTITVEKPVEAVWTYLTDFTTTEQWDPPTVSTERTSGDGGVGTTYHNVSRMLGREVEVDYEVVRFEPYEVFELTGAANGMSLRDTITFQSGQDTTTVTYRSEFSPHGVTKLATPVIAGGIEVLGSKVAHSLEKHLLAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY47</accession>
    <name>A0A0Q8UY47_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Urea ABC transporter ATP-binding subunit UrtE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_16475</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893666.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50197">
        <property type="protein sequence ID" value="KRC50197"/>
        <property type="gene ID" value="ASE19_16475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1833499at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="226" mass="23887" checksum="00FBCA60612B5CFD" modified="2016-01-20" version="1">MLELRDVTAGYGRTRVLENVSLEVPQDGAVAVMGHNGAGKTTLLRVAVGLLPVMSGQVLIDGQDVTRLRPNKRVARGLGYVPQGQLSFPQMTTLENLQLVDTDRSAIDGVLDTFPALRDLLGRRAGLLSGGQRQQLAIARTLLTKPRLLILDEPTEGIQPNVVAEIEGVITALTARGDLSVLLVEQHVGFALRSTGSYYVLESGRVTSSGEGGPGALAAVRAAMAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY77</accession>
    <name>A0A0Q8UY77_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16645</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893698.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50229">
        <property type="protein sequence ID" value="KRC50229"/>
        <property type="gene ID" value="ASE19_16645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="19"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="208" mass="22697" checksum="CF5F19DBF50AF19C" modified="2016-01-20" version="1">MADVKKRAYHSPLRSGQAQESRAAVLRAARELFVEQGYGATTIEQVAARAGVSKPTVFTAVGNKVTLLKVVRDVAMTGDDEPRAVTDREDVAAIAAAGDLDRAVALTARHIADVNGRAHGVHEVIRGASGTDPAVAELWEAVENQRHIGAGHLLERLQVRPTVPRKQAQDRLWLLMATDTYHRLVAVRGWSPAAYERWLTAEIRALFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYB0</accession>
    <name>A0A0Q8UYB0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LysR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893719.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50250">
        <property type="protein sequence ID" value="KRC50250"/>
        <property type="gene ID" value="ASE19_16765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1439189at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LysR_substrate" evidence="1">
        <location>
            <begin position="17"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="197" mass="21871" checksum="952B3C613AFF3008" modified="2016-01-20" version="1">MDQLRVAFVAGVTPDKWAKVWREKNPRIPLQLLPIEQGEQRAVLDEGTADMVLARLPVDLERPTPLHCVRLYDELPVVVASLEHLVAAVDDQDTVDPADLADEQLVLPHHSGWTPEVEQLPFPPMTEKDAIEVASSGSGVVIVPMSIARLHHRKDVVTRVVDLEPTTVALLWPRDADSEVHQDFVGVVRGRRASSSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYC3</accession>
    <name>A0A0Q8UYC3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Siroheme synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">ASE19_16840</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>NAD(+) + precorrin-2 = 2 H(+) + NADH + sirohydrochlorin</text>
            <dbReference type="Rhea" id="RHEA:15613"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58351"/>
            <dbReference type="ChEBI" id="CHEBI:58827"/>
            <dbReference type="EC" id="1.3.1.76"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Porphyrin-containing compound metabolism; siroheme biosynthesis; sirohydrochlorin from precorrin-2: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893731.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50262">
        <property type="protein sequence ID" value="KRC50262"/>
        <property type="gene ID" value="ASE19_16840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1185397at2"/>
    <dbReference type="UniPathway" id="UPA00262">
        <property type="reaction ID" value="UER00222"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043115">
        <property type="term" value="F:precorrin-2 dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051266">
        <property type="term" value="F:sirohydrochlorin ferrochelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004851">
        <property type="term" value="F:uroporphyrin-III C-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019354">
        <property type="term" value="P:siroheme biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd11642">
        <property type="entry name" value="SUMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006366">
        <property type="entry name" value="CobA/CysG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012409">
        <property type="entry name" value="Sirohaem_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006367">
        <property type="entry name" value="Sirohaem_synthase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036426">
        <property type="entry name" value="Sirohaem_synth"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01469">
        <property type="entry name" value="cobA_cysG_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01470">
        <property type="entry name" value="cysG_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="10" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="12" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="9" id="KW-0520">NAD</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="14">
        <location>
            <begin position="173"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="13">
        <location>
            <position position="203"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="13">
        <location>
            <position position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR036426-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC50262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="415" mass="43617" checksum="D1166E51824B99FC" modified="2016-01-20" version="1">MYDVSDFPPYPSGLRLEGRRVLVVGGGHVAQRRVPQLIAVGADVHVVSPVVTPAIEGLVGSGEITWHERPFEDGDLAGTWYVIAVTDDRAVNDHVSELCEEQRVFCVRSDDATLGTAWTPAVGREAGITVAVVGNRDPRRSASVRDEIVAGLRDGTIAAPHHRESLPERTPGVTLVGGGPGDPELISIAGRKALMAADVVVADRLAPRELLGDLPSDVELVDVAKLPRGRSAMQEEINRIIVERALEGKRVVRFKGGDNFVFGRGYEEIIACREAGVAVTVIPGLTSPVSVPGIAGIPVTHRGVTHEFTVVSGHLPPGHPEALVNYDALAKMQGTVVVMMGVENAPHIAAALVAGGRAASTPVAVICDGTMPTQRTVLATLGTLAERLVAEDVKPPAIIVIGDVVAVAHPDAFQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYK9</accession>
    <name>A0A0Q8UYK9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metal-sulfur cluster biosynthetic enzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15970</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50346">
        <property type="protein sequence ID" value="KRC50346"/>
        <property type="gene ID" value="ASE19_15970"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034904">
        <property type="entry name" value="FSCA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002744">
        <property type="entry name" value="MIP18-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01883">
        <property type="entry name" value="FeS_assembly_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117916">
        <property type="entry name" value="SSF117916"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeS_assembly_P" evidence="1">
        <location>
            <begin position="21"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="118" mass="12537" checksum="55A3DAA050BD0B1B" modified="2016-01-20" version="1">MPEAAGLAEASTNASSNVALADIEEAMKDVVDPELGINVVDLGLVYGMHVDESTNLVLDMTLTSAACPLTDVITDQTNSALEGLVNDVAINWVWMPPWGPDKITPDGREQLRALGFNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0U2</accession>
    <name>A0A0Q8V0U2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4915 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21245</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46631">
        <property type="protein sequence ID" value="KRC46631"/>
        <property type="gene ID" value="ASE19_21245"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017481">
        <property type="entry name" value="CHP03032"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16261">
        <property type="entry name" value="DUF4915"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03032">
        <property type="entry name" value="TIGR03032"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4915" evidence="1">
        <location>
            <begin position="2"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF16261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="325" mass="35743" checksum="66822ECCCF66B9A4" modified="2016-01-20" version="1">MLRLTGSSLVVSTYQTGRVVVMREQDGGLNTHFKHFEKPMGIAHHGPVLALGTRSEVITFRNVPGLADRVGAQHDAVFVPRTRLHTGDIRVHDLAWAGNELWAVNTRFSCLVTLDGVHSFVPRWRPPFISALAPEDRCHLNGLAVVDERPRYVTALGTTDAAGGWRPGKADGGVVMDVTTDEIVSSGLSMPHSPRWYRDRLWVLESGQGSLVTVDVTTGERTTVAQLPGFTRGLAFAGRYAFIGLSQVREAVTFGGIPLTARLEDRQSGVWIVDIETGETMGFVRFEDRVEEVFDVALLPGMRYPELLGTDDERLVDSFMVPPGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V112</accession>
    <name>A0A0Q8V112_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Adenosine 5'-phosphosulfate reductase</fullName>
            <shortName evidence="3">APS reductase</shortName>
            <ecNumber evidence="3">1.8.4.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">5'-adenylylsulfate reductase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Thioredoxin-dependent 5'-adenylylsulfate reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">cysH</name>
        <name evidence="6" type="ORF">ASE19_18880</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the formation of sulfite from adenosine 5'-phosphosulfate (APS) using thioredoxin as an electron donor.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[thioredoxin]-disulfide + AMP + 2 H(+) + sulfite = [thioredoxin]-dithiol + adenosine 5'-phosphosulfate</text>
            <dbReference type="Rhea" id="RHEA:21976"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17359"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:58243"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="1.8.4.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="3">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite from sulfate.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the PAPS reductase family. CysH subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.8.4.10" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49123">
        <property type="protein sequence ID" value="KRC49123"/>
        <property type="gene ID" value="ASE19_18880"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00705"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004604">
        <property type="term" value="F:phosphoadenylyl-sulfate reductase (thioredoxin) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019379">
        <property type="term" value="P:sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01713">
        <property type="entry name" value="PAPS_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00063">
        <property type="entry name" value="CysH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004511">
        <property type="entry name" value="PAPS/APS_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002500">
        <property type="entry name" value="PAPS_reduct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01507">
        <property type="entry name" value="PAPS_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000857">
        <property type="entry name" value="PAPS_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00434">
        <property type="entry name" value="cysH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAPS_reduct" evidence="5">
        <location>
            <begin position="40"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="205"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; cysteine thiosulfonate intermediate" evidence="3">
        <location>
            <position position="220"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="197"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC49123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="224" mass="24436" checksum="78E128EFC8AE3686" modified="2016-01-20" version="1">MRELVSHWGAELELAPAEVIIEWAAATFGDRFCITSSMGDAVLAHLAQKVVPGVDVVFLDTGYHFVETIGTRDAVAATMNVNLISITPVQSVAEQDAEYGPELYKRDPDLCCALRKVKPLADSLAGYDAWATGLRRAETHNRVIAPVIGWDAKKQKVKVSPIARWSDEQVERYIAENGVLVNPLVYDGYPSIGCAPCTRRVAPGEDPRSGRWAGTNKTECGIHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1F6</accession>
    <name>A0A0Q8V1F6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MerR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15430</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51468">
        <property type="protein sequence ID" value="KRC51468"/>
        <property type="gene ID" value="ASE19_15430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1661714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="12"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="96" mass="10789" checksum="52499FDAE234C407" modified="2016-01-20" version="1">MNQARRDHRRGVFAISVAADMTSLQIQNIRVYERRGLLEPARSEGGTRLYSPADIETLHRIRDLLADGLNLAGIARVLELELEVARLQAQVARLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1T7</accession>
    <name>A0A0Q8V1T7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15375</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896526.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51461">
        <property type="protein sequence ID" value="KRC51461"/>
        <property type="gene ID" value="ASE19_15375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1468357at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="177" mass="19299" checksum="94A3484FBAAB77F4" modified="2016-01-20" version="1">MSTEPAPREEPYDVVLLVEQALTAADAAQVRALHLELDDDPTIEVVYHLLLPMADAAAAVEASLGVIGGADLIAPPMTPSPDEIDHLREEYREQAERDLSSTVEVLAAAGAHIGSRTIVTDPPVDALTRKVKDVDGREAIILTRPHLVAEFFHVDWTSRARRKLGVPVLHLLEHDQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2T3</accession>
    <name>A0A0Q8V2T3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FMN_red domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893734.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50265">
        <property type="protein sequence ID" value="KRC50265"/>
        <property type="gene ID" value="ASE19_16855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="796211at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023932">
        <property type="entry name" value="Uncharacterised_CE1759"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04037">
        <property type="entry name" value="LLM_duo_CE1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN_red" evidence="1">
        <location>
            <begin position="4"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="215" mass="22247" checksum="C38615F957F1759D" modified="2016-01-20" version="1">MTQRIVVVSAGLSVPSSTKLLADKLGDAVERAVVARGREVDVQHVELRPLAHQLADHLLTGFATGELANALDLVKAADALVVVTPVFSASYSGLFKTFFDVLEPGALDGTPVVIAATAGTARHSLVLDHALRPLFAYLRAVVVPTGVFAASEDFGASDDGSLDKRVQRAAGELAVLLGGATAAAPAPARRSVADEFAAPTPFEQLLREAGGSSVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3J6</accession>
    <name>A0A0Q8V3J6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17995</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893214.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48813">
        <property type="protein sequence ID" value="KRC48813"/>
        <property type="gene ID" value="ASE19_17995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1087129at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="39"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="458" mass="49562" checksum="1E38D95C01CD471E" modified="2016-01-20" version="1">MSPSEAHARADAAAPRVLWLDTPGRPAPRPAVTAPLDVDLLVVGGGFTGLWTALGALEREPGRSVLVVERDRIAEQATGRNGGFCEASLTHGEDNGRDRWPDEYDELERLGLENLAAIEAAVARHGIDCDFRRSGQLSVATRAHEVPGLEPSTDGFLDAPAVRALVDSPTYLAGRLDAEGCAMVDPARLAWGLADAVESLGGRVAEGTSITRLRRRSGAVEATTADGTTIRARRVAMATNAFPGLLRRVSARVVPVYDHVLATEPLTAEQLASVGWEARCGVADSGNLFHYYRLTADDRILWGGYDAVYHFGRGISPEHEQRPATHRVLAEHFYETFPQLADVGFSHRWGGVIDTCTRFCAFFGTARRGRVAYAAGFTGLGVGASRFAAEVMLDLLAGADTERTRLAMVRDKPLPFPPEPLAWTGIQLTRWASARADATGRRNLWLRTLDRLGLGFDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3M6</accession>
    <name>A0A0Q8V3M6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17355</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893812.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48705">
        <property type="protein sequence ID" value="KRC48705"/>
        <property type="gene ID" value="ASE19_17355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="13"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="420"/>
            <end position="500"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="519" mass="56678" checksum="3D109B3303B205E6" modified="2016-01-20" version="1">MFVPFSVNDFLDRAVQVYGERVGVVDEPTQPAASQGELTYTQVGELARRQAARLDELGIGVGERVAIVSHNSSRLLTSFFGVSGWGRVLVPINFRLSAEEVQYIVDQSGSRVLYVDPEIEEHLAGVTCEHKFLIGDDDALYAAPGAEPKAWEHDEAATATINYTSGTTARPKGVQITHRNIWTNALTFGLHAQIGDRDVYLHTLPMFHANGWGMPFAMTGVGAQHIVLRKVDGAEILRRVRDHGVTVMCAAPAVAAAVLEAAQTWEGEIPGRDKVRIIMAGAPPPTKTVIRVQEELGWEFIQIYGLTETSPLLTFNRTRAEWDDLSPEERATKLTRAGAPAIGVTLHIDESEEGAGEVLARSNVVLEGYWDKPEETAAALVDGWFRTGDGGYLGDDGYLTIADRKKDVIITGGENVTSIEVEDTLFSHPAVAEVAVIGVPSEKWGETIKALVVLTADAADKAGAEMEAELIKWCKDRLAGYKSPTSVEFRDELARTATGKLQKFKLRAPYWEGLTRQVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V690</accession>
    <name>A0A0Q8V690_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH_17 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10275</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894728.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52795">
        <property type="protein sequence ID" value="KRC52795"/>
        <property type="gene ID" value="ASE19_10275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2076478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041657">
        <property type="entry name" value="HTH_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010093">
        <property type="entry name" value="SinI_DNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12728">
        <property type="entry name" value="HTH_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01764">
        <property type="entry name" value="excise"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_17" evidence="1">
        <location>
            <begin position="17"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="71" mass="8060" checksum="AF061BF890D84181" modified="2016-01-20" version="1">MTPPSRERTESLPDPKFLTIAEVATVMRVSKMTVYRLVHGGELPAVRVGRSFRVTEEDVNEYLRKSFYSAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6A1</accession>
    <name>A0A0Q8V6A1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10180</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894709.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52776">
        <property type="protein sequence ID" value="KRC52776"/>
        <property type="gene ID" value="ASE19_10180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1122642at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="231" mass="25386" checksum="8C66D57C54F59A1D" modified="2016-01-20" version="1">MSTPDTIVHLVRHGEVHNPQGILYGRRDGFHLSVRGRAMADRVAEAMKGNDITLIRSSPLERAQETAAPLAAALGLEVGLEPRVLESQNRFEGLTFGKGNNALRNPLLWRHLYNPFRPSWGEPYKAIVERMMAAVHDARRDAAGHEAVLVSHQLPIWTTRLAAEKRSFLHDPRKRQCTLCSITSFGFAGEDLVEISYAEPAIDLIPTGDIAAPFSAGDAPEENKPEGTPPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6D4</accession>
    <name>A0A0Q8V6D4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10355</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894741.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52808">
        <property type="protein sequence ID" value="KRC52808"/>
        <property type="gene ID" value="ASE19_10355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1573721at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="30"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="31182" checksum="CD4E0080416E2AEF" modified="2016-01-20" version="1">MNTSAKATSTVTAREAAEVEAANTSGRQPVVLVHGLWLLHSSWDAWKAYVEERGYAAVAVDWPHDEAGFEAAHANAGSLAGTSVRDVADHVQEVIERLDRKPIVIGHSFGGLLVQILAGRGLAAGTVAIDPAPSQGVLPLPYSSLKAALPVLGNPLNHGRTVTLTFDEFRYGFANAVPEQEARELYDTVHTPAPGRPLFQAATANVNPWARTKAAKKNADRGPMLVVTGEKDNIVPFAMANAAYKLQRRNRHHATELVEIPGVGHSLVIDSHWREVADAALDFLARHGLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6H2</accession>
    <name>A0A0Q8V6H2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10540</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894773.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52840">
        <property type="protein sequence ID" value="KRC52840"/>
        <property type="gene ID" value="ASE19_10540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2148480at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359742" evidence="1">
        <location>
            <begin position="33"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="306" mass="31794" checksum="C039E6B01A52F019" modified="2016-01-20" version="1">MRLTVRRQRLLVLAAVLVLASAAVLLPRVDDGAHGQAQNGAYQPFACDQPGSTNPQQRRQDVQLDNGAGDFNAAGRMYPCLAGVRWHLQSGNVATSDPGTAIGQIRTAYGRKFPGTVYYAAAGSRTDLYQVAFSGLQFCTGDTTPVGACPASGTTDIQLYADSGDAPSPKPAAPYRLTIDPDQAITIGGAGVWTEVLATASSSFTVPVAQLPTATHLACGLVGGTARGGFLGIGGTCELSAEDFAGGLAQWLGGGENYTLLGVNLDFYYLVTHRQNPSDPYTQLPVDGSGNPLNSIQLPDTTISVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6N4</accession>
    <name>A0A0Q8V6N4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10900</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52907">
        <property type="protein sequence ID" value="KRC52907"/>
        <property type="gene ID" value="ASE19_10900"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="155" mass="16760" checksum="33267605EC4D3ABE" modified="2016-01-20" version="1">MLPDPTPRLRFREMTEADLPAVSTLDLGGSRGPEGWIQWQRDNYAEHGFGLWIVETHDGVFVGDCGLTMQEVEGDWYVEAGWHVHASLRRKGYATEAAAAVRDAARAAGIAHLVAIIRPDNLASQGVARGIGLALEREVVKSGGPALVFGADLTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6T6</accession>
    <name>A0A0Q8V6T6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17155</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893789.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50320">
        <property type="protein sequence ID" value="KRC50320"/>
        <property type="gene ID" value="ASE19_17155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1762411at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="21776" checksum="EDF98E27C5D44A20" modified="2016-01-20" version="1">MSIRPLETPDLVDPRAVLDQLRGRIQALEGGPTRLAVPTLPAFDGLVRLRTGGVYGVDSASLGMALAAGASQAGEWVGFAGWDDFGVEAAHQWGIDLSRTVLVPAPGEHWLEVTAALVDVLKVVVLRPPGSVDAKSASILDARLRARAGVLVVQGDWPRCEVRLATERSTWLGIGAGNGRLRERHVELAARGGGRMPARSELVIAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6V6</accession>
    <name>A0A0Q8V6V6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ROK family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11335</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ROK (NagC/XylR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894914.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52984">
        <property type="protein sequence ID" value="KRC52984"/>
        <property type="gene ID" value="ASE19_11335"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1130699at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000600">
        <property type="entry name" value="ROK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18964">
        <property type="entry name" value="PTHR18964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00480">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="397" mass="40473" checksum="82FA0359DF844284" modified="2016-01-20" version="1">MVDVRVPPVVRESATAGDLLALLRSGRASTRADLRTLTGLSRTAVVARVNALTEGGLLLLGAELASTGGRPPGSLVFNTDAGIVLAAAIGRSRSQVAVFDLGGTELSSSAVDHEIGAGPDEVMPGVAEHLRALMSPDLPPVLGIGISLPGVVDPGRGVSVDTPVMAGWDGVPLAPYLEGVADAPLLLANDADTMARSEFLGHAKEIRDLLVVKASTGIGLGVLADGRIVSGARGGAGDLGHTKVPEAAGRPCRCGDVGCLETLAAGWALVARLREEGRTVDHIRDLVAQALSGDPEAKHMLRESGRQVGELLAVAINLLNPRAVVLGGDMAGAYDVYAAGVREAVYARASALATRELQFLPATYGDKAGLVGCAALALEAVLSPAAVDSRLASRSRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V700</accession>
    <name>A0A0Q8V700_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894859.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52927">
        <property type="protein sequence ID" value="KRC52927"/>
        <property type="gene ID" value="ASE19_11010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1969475at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359755" evidence="1">
        <location>
            <begin position="25"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="17733" checksum="D694754606379DC6" modified="2016-01-20" version="1">MSRRRTVVGIVLLLAVAVVGGAVALVLANRGPGPDEVAEEFLTAQWTGDWTTECELATEDWQHVLFEGHPFADCDAFADSAAKANADNPFLDYADDTDVDVSVQVRSDEDDVARVEYVVEFRYHGEDRTGFDALWQGGSAADRGTLQLARVDGDWRVAAADDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V718</accession>
    <name>A0A0Q8V718_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16080</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893597.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50129">
        <property type="protein sequence ID" value="KRC50129"/>
        <property type="gene ID" value="ASE19_16080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="274" mass="29718" checksum="2FFFA1F660CC7530" modified="2016-01-20" version="1">MPSAVTAAPPRHLEILMCPPTHFAVEYAINPWMDTTVPVDVARAVAQWEELRATYLRLGHDVRVAEPVPGLPDMVFAANAGVVHDGRVLVSRFTHAERQGETAAYAAWFEAAGYREVRTASVRNEGEGDVLTVGGVLLAAAGTRTTREAHAEMAEFFGVPVIALELVDPRFYHLDTALMVLDERTVAYYPGAFSEASRAVIEQLFPGAIHATEEDACGFGLNAMSDGVHVVMSDRATHLQEVLRERGYQPIGVDMSELIKAGGSAKCCTLELRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7D1</accession>
    <name>A0A0Q8V7D1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Topoisomerase II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12250</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895071.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53144">
        <property type="protein sequence ID" value="KRC53144"/>
        <property type="gene ID" value="ASE19_12250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1424843at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045970">
        <property type="entry name" value="DUF5926"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004027">
        <property type="entry name" value="SEC_C_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19348">
        <property type="entry name" value="DUF5926"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02810">
        <property type="entry name" value="SEC-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5926" evidence="2">
        <location>
            <begin position="51"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19348"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="314" mass="33092" checksum="0CB2EDB9B195901C" modified="2016-01-20" version="1">MAKKNRTKTSAATETAPGEVGPRQPCPCGSGKRYKACHGAPGGGQVFVKRPFEGLASEADVVALRELVPAATAALTLKGEYADRVVKLCTLLPMAAPAMVRDSGEVWLGLQVQHAFGDPSRDLGAVLVEALAAEPGAGMVGLTSAPAADGPRLQDLVEDVALNVEVHEGFDYWVADMEASSELAQALEQAEGAAAPTARLTEVTAAYWTRMGAKEHLRWVMPEPEDALLDALARLHVSGDDVIVPDARFVGMFRAHGLLAPVWDLPVGTGPEPLEDAATAFKAKLDAALADTSDLTTEQRAARNGLANRQVTIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7F9</accession>
    <name>A0A0Q8V7F9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17070</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893774.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50305">
        <property type="protein sequence ID" value="KRC50305"/>
        <property type="gene ID" value="ASE19_17070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1804797at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024747">
        <property type="entry name" value="Pyridox_Oxase-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12900">
        <property type="entry name" value="Pyridox_ox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="142" mass="16005" checksum="7945EFF725F277E2" modified="2016-01-20" version="1">MDTYEDLQQADLHELARPECLRLLALARVGRIVYADDRGPVALPVNFRMDGSTVLFRVSPAGDLHRWLDGATVAFEVDRLDDFHQTGWSVLVRGTSAYVDSEDLPSLRSERPLPWARGLRPVTVRVQPTQITGRRLVDDRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7H9</accession>
    <name>A0A0Q8V7H9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19445</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893465.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49063">
        <property type="protein sequence ID" value="KRC49063"/>
        <property type="gene ID" value="ASE19_19445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2161979at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359771" evidence="1">
        <location>
            <begin position="28"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="14723" checksum="ECEDEE43DF50C9A5" modified="2016-01-20" version="1">MLRMTKKKAAVVGGVTAVVLTGGVAFAYWTSTGEGTGTATTGTSSAWEVTVDDSTPGLTPGGPSATVSFHVKNTNSGVQNLQGAVATVEGTSDSGCTDADFSITSLSVPTGDVASGATVDGTFVISMINRAANQDACKGVSIDLKVAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7J5</accession>
    <name>A0A0Q8V7J5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="14">CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_16185</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Lipid metabolism; phospholipid metabolism.</text>
    </comment>
    <comment type="pathway">
        <text evidence="11">Phospholipid metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50353">
        <property type="protein sequence ID" value="KRC50353"/>
        <property type="gene ID" value="ASE19_16185"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00085"/>
    <dbReference type="UniPathway" id="UPA00258">
        <property type="reaction ID" value="UER00370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008444">
        <property type="term" value="F:CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004570">
        <property type="entry name" value="Phosphatidylglycerol_P_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000847">
        <property type="entry name" value="Phos_ph_gly_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00379">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="8 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="10" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 12 14" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 13" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="21"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="133"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="164"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00025707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC50353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="204" mass="22388" checksum="1ACC6ED6CA874C5A" modified="2016-01-20" version="1">MGEAVTRNGRSTDRVLTVPNAISASRLLGVPLFLWLVLGPEADVWALVVLMVSGVTDFLDGWLARKLDQTSELGRLLDPVADRLYILAVVVGLALRDVIPWWVALSLPLRDLLLWGLVPLLRTRGYSALPVHFLGKAATFNLLYAFPLLLLGDGDGTVATLAKVFGWSLAGWGIGLYWWAGVLYAWQVRKLLATTEPRNRSGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7K0</accession>
    <name>A0A0Q8V7K0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Asparagine synthetase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15365</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51459">
        <property type="protein sequence ID" value="KRC51459"/>
        <property type="gene ID" value="ASE19_15365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="193437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004066">
        <property type="term" value="F:asparagine synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006529">
        <property type="term" value="P:asparagine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001962">
        <property type="entry name" value="Asn_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00733">
        <property type="entry name" value="Asn_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Asparagine synthetase" evidence="2">
        <location>
            <begin position="192"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="450"/>
            <end position="473"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="542" mass="58556" checksum="BAD75D5D3AF979FA" modified="2016-01-20" version="1">MFRATPFVCGYVGPGDTALWARLRAAAPVELTAEASGPHHAVAASTAPLLDRSASAWTWGRYVIDRRRPADWRDAAHELGLAGLWASADGARLHTDLSGLHDVFHRSIGGTTYFATRIAPLRDLAPGLDTDWDGWGTSLAFGGFIGTATPFRQVHRLPYGGSITADATGIAHHHESPAWLGDEAPAAGIGEVAAAFRRAVPGPLTRTPHHVTLSGGWDSRLIALAMVRNRTRRPTAWTVDPDTGVGHDVEIARAVAQALRLEHRVVPSGGHSWGRHRPNLLARVEHLTWMHTWLGPLASRVRHLSGPVVDGLGGDVLLRNLFTDAALLAAPSRDERLDLQLHALGGGRITARRPLAPALAQRWADAAREQMTATGDRWSGHPSEYVLRALAVRTSRVIAPSPMRLFAPEAAVLLPFMDPAVLRTALAVPVAAKTDHTFYRGLLAALHPRVGPMPSTNDGLPKTPERPRSQTRRSAIAPMVEAVLADEVVLGLLSAAMIRRLRRGGRTLPDDVPLAALQWAAALADWRATNRAHLRVDDVPER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7M9</accession>
    <name>A0A0Q8V7M9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ArsR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12830</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895702.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53240">
        <property type="protein sequence ID" value="KRC53240"/>
        <property type="gene ID" value="ASE19_12830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1800563at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018334">
        <property type="entry name" value="ArsR_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01022">
        <property type="entry name" value="HTH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00846">
        <property type="entry name" value="HTH_ARSR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="24"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="118" mass="12662" checksum="A058BB715234A2A0" modified="2016-01-20" version="1">MSKSLELTPVETVACCSPLTREPLTSDAAERIAPLVKAIADPVRLRLLSLVASHADGEACVCDLNDAFELSQPTISHHLKVLHESGLLDREKRGVWVYYRVRAGALADLATLLGGVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Z6</accession>
    <name>A0A0Q8V7Z6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13075</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895746.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53284">
        <property type="protein sequence ID" value="KRC53284"/>
        <property type="gene ID" value="ASE19_13075"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1629615at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018309">
        <property type="entry name" value="Tscrpt_reg_PadR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005149">
        <property type="entry name" value="Tscrpt_reg_PadR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03551">
        <property type="entry name" value="PadR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10400">
        <property type="entry name" value="Vir_act_alpha_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PadR" evidence="1">
        <location>
            <begin position="7"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="Vir_act_alpha_C" evidence="2">
        <location>
            <begin position="91"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="196" mass="21610" checksum="DA048902079F1B4E" modified="2016-01-20" version="1">MSVKHALLALLEQQPMYGYQLRVEFEQRTGTTWPLNVGQVYTTLTRLERDGLAAARGEDAEGHVIYEITAAGRDEVASWFTTPVSRDQPPRDELAIKLALAVTVPGVDVGTVIQQQRSATMAALQDYTRLKRQAGRDVPTEPSDLAWSLVLDSLVFGAEAEIRWLDHCEARLRRAAIERPAAGTPTAAPASERSTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V830</accession>
    <name>A0A0Q8V830_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13050</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53279">
        <property type="protein sequence ID" value="KRC53279"/>
        <property type="gene ID" value="ASE19_13050"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013784">
        <property type="entry name" value="Carb-bd-like_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49452">
        <property type="entry name" value="SSF49452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359786" evidence="1">
        <location>
            <begin position="25"/>
            <end position="502"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="502" mass="52358" checksum="3390F8934585C4CD" modified="2016-01-20" version="1">MARWLGGLLVAALVVVAPAGTARAAVTQGIQGTVTGDGHGLSGIGVWVVPVDPDTPVTGDISYVPCDIECDVFEADADGSFDISLPVGEYWLLFAPAVRGDWAPEWWQDSPTREGSAKVTVTADAVTTVDAVLEHGGAVTGTLPGITEAHDVLVEAWLPDATMASGFHRVAIGGADDQGRYRVGGLPTAPGYRLHFLDRTAKREGWWNGQKSVATATPLAVGAPSTVSGIDPELAPWGVVAGRVTQAVDGSGAGLASVTATQGNGWTSLRTATTDASGHYALQLPAGTYALSFTHPDLRTQEVAAQVVTIGEQTTVDRALDPKAMVNLVLPTVRGVPRVDATLSVPQSTWFPSGASLTYQWRSAGIAIPGATGTTYRPRAADVGKLVTVRITASKPGHTSTSAFASATDVVARGVLRLGSTAVVRGTLRVGSRLVAVPPATTPGAYRSYRWLRDGSPVRGATSSSYRLVKADRGRRVAVRITLTRPGYVTRVVTVTRTGLVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V851</accession>
    <name>A0A0Q8V851_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_13640</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897119.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53384">
        <property type="protein sequence ID" value="KRC53384"/>
        <property type="gene ID" value="ASE19_13640"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006825">
        <property type="term" value="P:copper ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046688">
        <property type="term" value="P:response to copper ion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032694">
        <property type="entry name" value="CopC/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007348">
        <property type="entry name" value="CopC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008457">
        <property type="entry name" value="Cu-R_CopD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014755">
        <property type="entry name" value="Cu-Rt/internalin_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34820">
        <property type="entry name" value="PTHR34820"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04234">
        <property type="entry name" value="CopC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05425">
        <property type="entry name" value="CopD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="SSF81296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0186">Copper</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0732">Signal</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="10">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359804" evidence="10">
        <location>
            <begin position="26"/>
            <end position="952"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="160"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="200"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="239"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="264"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="291"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="330"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="363"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="398"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="domain" description="CopC" evidence="11">
        <location>
            <begin position="28"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="CopD" evidence="12">
        <location>
            <begin position="326"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="13">
        <location>
            <begin position="547"/>
            <end position="674"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="126"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF04234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF05425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC53384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="952" mass="96104" checksum="3B25BB2977329288" modified="2016-01-20" version="1">MILRQFVVVAVVALSALLGGGAAPAAAHPNAIQSTPEAGSVAPEAPKAISIALSEPAVARGSTFEVTGPGGKAVATGPVTEKANGQILSVVPRTTLASAVYTVRWSALGDDGHVVSGSFRFGVATADGDDPPGAASLTGAGQRPDSSAAGDSVIRWTGRWAGILMASVLFAGLLLLHRLRRAGEISPAGESRLLRLTPTAWLVTVLAAVAGALTSATAGSTGEFDLGLLTESATGRADLARLAFVAVATAALLVVRRRPRVRPWVGLAAAGGVLASYAFSGHVLTEPSVPYLLAVVVHVLAAGLWLGGLGAVAVASRVGGVDVRTSLRRYAAIAIGALVVVVLTGVAAAIREVAHWYFLTWSGYGRVVLAKAALVVVIAVIGLVAWRRSRGDRQPGPARAVGFELVAGVVVLALAVTLGALVQGRDRPLPAQVGNLFAGPAAATAVLDSGTAAVGLAPARAGDNVLTVALPPEDPAAKKVSVVLTGPDRGDRPRTVDLQQHGGRTWSAPVDVPADGQWRAEVTVDGESGQAVALEVGVPEAPGAPPIDVVAVADLSGPAAERCRAHVIGVQMALARLNADGGLDGGRKVSLLTIDSGGTPDGARKAAARALRAGGVASAGTCGGGGSEAVEALADADLPVVVGDPAVDPTETRGVFRLVADPFAQGVALGQLIRGRVQPAGVAAEPVVRALVADDLQGRRLLAGLRIGLSPKAAPRGFAEPSSRPVPEVVQLEPGSLASLDDGALTRVIDARRTTALVVDLPDAGGPDVGAIERLGRARGDKVLTSPILLSERVLSETVVRASGALGHLGAVQGVSEVSPSSTDAVLYRMAVPQLFRGELASLDGLRGYATGRAIAEALATGTSARKVLEYLGSPDVFSSALLAPWSPRQPGLGSTAVVALQPQFLAPTLIPGSAGGERQDDSYFPEGNWAVTSTAPLGLVPGLGAGTQVPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8H4</accession>
    <name>A0A0Q8V8H4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Ligand-binding protein SH3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_11955</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the drug/metabolite transporter (DMT) superfamily. Small multidrug resistance (SMR) (TC 2.A.7.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895202.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53646">
        <property type="protein sequence ID" value="KRC53646"/>
        <property type="gene ID" value="ASE19_11955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1921902at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000390">
        <property type="entry name" value="Small_drug/metabolite_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045324">
        <property type="entry name" value="Small_multidrug_res"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30561">
        <property type="entry name" value="PTHR30561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00893">
        <property type="entry name" value="Multi_Drug_Res"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="58"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="85"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="107" mass="10623" checksum="5A14DE9A57054ADB" modified="2016-01-20" version="1">MLSAGLLAIAITVEVAATSALGRTDGFRHLGWTALVLTGYVASIGLLAIVVREIPVSVAYAVWAGVGTAAVAVIGATVLGEPMSLTKAAAIAMIVLGVVVLNLSGAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9W4</accession>
    <name>A0A0Q8V9W4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09525</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894603.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52665">
        <property type="protein sequence ID" value="KRC52665"/>
        <property type="gene ID" value="ASE19_09525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="839891at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012685">
        <property type="entry name" value="CHP02304_F390_synth-rel"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02304">
        <property type="entry name" value="aden_form_hyp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="416" mass="45526" checksum="8B56D6C096A3CC61" modified="2016-01-20" version="1">MGGSQAAVAAAFARERWLLPRRYDAARARALERFLREDLPRASFYAPHAGRALHELPVVDKRTVLADFAAFNRYGIGLEQALAVAEAAERSRDFTDTLPGGVTVGLSSGTTGTRGVFLVSEEESRLWAGILLGQMMAPASLRALTSRPLRVALFLRANSNLYETLDSRRVRFSWHDLTQPVEDHLPDLPGTDVLVAPASVLRRIAAAKPAGLRPIQVISVAETLEPDDEAVIRAAFGRPVEQIYQATEGLLAVSCPTGRLHLNEGHVHVEPQWIDHRRFHPVVTDFTRTTQLVVRHRLDDVLLAAPGPCPCGRPGRSIAAVLGRADDVLLLGDVPVYPDVLRHAVALAGELGDYRIEQHGDEWRVAVTGAQAGISRVGAEVTRLAERLRAAPPVVVPMAWPAEAPDQKRRRIRRVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Y9</accession>
    <name>A0A0Q8V9Y9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_15495</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893492.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50023">
        <property type="protein sequence ID" value="KRC50023"/>
        <property type="gene ID" value="ASE19_15495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="9"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="125"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="232"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC50023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="386" mass="42540" checksum="8231ECB51C716316" modified="2016-01-20" version="1">MDLELSNSELAFQAEARAWLAENVPAEPLPSLDTPEGFELHRQWEAKLSAARWSVVSWPEEYHGRAASLVEWIIFEEEYYRAGAPLRVGQNGIFLLSPILFEHGTQEQQDRFLPSMATGDKVWAQCWSEPEAGSDLASLKSTARRDDDRGGWVLNGQKIWCSRAALAHWGFGLFRSDPEALKHAGLTYFLFPLDADGVTVRPIAQLDGEAGFAEVFFDDVFVPDADVLGAPGDGWRVAMSTAGNERGLSLRSPGRFTAAADRLLALYDETPEGPNRTAATDGVVDAWIKAEAYRLYTWGTVSRLKDGGDIGAAGSVNKVWWSELDVALHETALDLLGPDAELESTWLDGYTFSLSGPIYAGTNEIQRNIIAERILGLPREPKGLQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA86</accession>
    <name>A0A0Q8VA86_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_07970</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CDP-glycerol glycerophosphotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895436.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54004">
        <property type="protein sequence ID" value="KRC54004"/>
        <property type="gene ID" value="ASE19_07970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1408977at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047355">
        <property type="term" value="F:CDP-glycerol glycerophosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019350">
        <property type="term" value="P:teichoic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007554">
        <property type="entry name" value="Glycerophosphate_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043148">
        <property type="entry name" value="TagF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043149">
        <property type="entry name" value="TagF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04464">
        <property type="entry name" value="Glyphos_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0777">Teichoic acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="6">
        <location>
            <begin position="10"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="868" mass="97686" checksum="F7790F5F1E61F8A0" modified="2016-01-20" version="1">MTADRAPLFSIVSAVYNVAAYLPDFIDSIEAQTTGLDDVEIVMVDDGSTDDSPRILAEWAAKRPGVVRVITQENGGQGAARNRGIDESTGTWITFPDPDDVVEPDYLEVVRTFLTQHPEAHMVATHRLIWNETKGTVTDRHPLRAMFQGSPCVDLSASPDRFHGSSPATFFRLAEIRDGQLRFDHRVRPNFEDGHFNCRYLFRFPNPIVGFLGGAKYHYRKRTDASSTLQTAGTHPGRYTAVPEFGYLDVIRRGREAHGQLPAWAATFLLYELQWYFAQPDPKAGPRPVDGEVVDRFHELVAEILAEIDIPASTPYLPPTVPPVARLVLERGYDATPWVETQVLLSELDTTQELVRASYYYTGDLPEETWLANGRPLEPKHQKTRAFTYYGRTLLHQRIVWLPATATLQLLRDGTAADLVYARDPGPVRVAPPGQLRWWLSPASARARAEIPGELQVRQPVSRLSKVADRVRKRPSVKAKYADAWVFMDRIHDAADSAEILFRYVREHHPEINAWFVLEKGGKEWDRFRSEGHGDRLVAYKSLQWRVLMSHAAHLLSSHADAAIVQPLPVLEFVHQKWRFHFLQHGVIKDDLSSWLDPKRIDTFVVSTPQELASIAGDDTSYVFTTKEVALTGLPRFDRLQQVGERFGPDQRDLLLVAPTWRNNLMSPIKENSQRRELDLSLVDSYFVQQWMAYLRDERLAAACREHGLTLGFLPHPNLQPLLPHLDLPSYVTALSYEGQDPQELFARARAFVTDFSSVAFNAAYLERPVVYYQFDADVVLGGGHVGRGGYYDYERDGFGPVATEAAAAVTATVETLAHGAAPAPAYQARIDATFPHRDGGNCARVVERVRFTETDQSKLPPVRTPGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAG9</accession>
    <name>A0A0Q8VAG9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Aldedh domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_06820</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895616.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54184">
        <property type="protein sequence ID" value="KRC54184"/>
        <property type="gene ID" value="ASE19_06820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="744602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07106">
        <property type="entry name" value="ALDH_AldA-AAD23400"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044086">
        <property type="entry name" value="FUS7/LUC3-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="29"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="252"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="480" mass="50671" checksum="E2D6C51D055D0528" modified="2016-01-20" version="1">MYVDRHLVERINVVEFQLSVDGHGVDSAARFPVENPATGQVFAYAPDSSASTVDSVMASASNAFARWRSGDGARCEALARCAAAIMSAADELAALLTAEQGKPLADAMSEVRATAGWFSHFSKFTAPSEILQDDATALVDVKRSPLGVVLAITPWNYPLLLAGFKLAPALRAGNTVVLKPSPYTPLSSLALGEILSAVLPSGVVQVITGLDSLGPVLTRHPQVRKISFTGSTTTGRLVAESAARGLKHVTLELGGNDAAIMLDDLTPRDVVDRIFWSAFANNGQTCIAIKRLYVPRSSYEETVDLLAECANQVAVGAGDQEGIRLGPLNNALQLETVSSMVDAAVRAGADAVTGGRLIDRPGYFYEPTIVTGAADDSDLVAREQFGPALPVLVYDDLDEAVERANATDFGLGGSVWGTDRERAASVASRLDCGNAWVNTHMTLSPNLPFAATKSSGLGVENGLLGYLSFTELQTRHIPKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAM0</accession>
    <name>A0A0Q8VAM0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_17010</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893764.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50295">
        <property type="protein sequence ID" value="KRC50295"/>
        <property type="gene ID" value="ASE19_17010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1635706at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007895">
        <property type="entry name" value="MASE1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05231">
        <property type="entry name" value="MASE1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="32"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="57"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="79"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="120"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="152"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="184"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="225"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="259"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="8">
        <location>
            <begin position="455"/>
            <end position="587"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="7">
        <location>
            <begin position="596"/>
            <end position="849"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC50295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="858" mass="90806" checksum="95C7D204D0C0CAC3" modified="2016-01-20" version="1">MARRRVLETAGFAALYAVAMYAGRETHLPPSQLALAWPAAGVVIVWLLSCPTRTSRVVAIGVITVVSGLINQATGVESVGGWLFGLVNASTGLVGAWVLRRRRRWIRPRAVESVGDLGDIGLASVAGAAVSAVSGGVVAWTRFGTDLWDGMALIGFRNALSAFIVVVVLLAAPELRRRPGGLTLRSAGWAAGALLVSSALMESSWPVAFTLVPPLLVVAMRCGYAVTALVVGLQGVAVVAATVAGRGPFSVVAAPEQRVVLAQVLILVLALVGLVVAIAERDRTRALVASQRDRDRLRDHMDAALVANAHLALGRTGEVFVIDANTALCSLTGRHREDLAGGDPAWWLAPSSVRSLADGVDSLVAGRSCTWRDRLEFAASYGGAIVDAALSVVPTGTDSAEVELNLQMIDITAQTEAETRLAELALHDELTGLPNRALWADRLQLALSEAGRTRELVGVLYVDVDHFKQVNDTHGHDVGDELLREIARRLSSIVRPHDTVARIGGDEFVVLCPSLPSREDGTRLAARIQQVMAAPVDVGFLQLAPTVSTGVTFATGDDDPRVIIRRADTALYAAKGAGRGRFEVYRPDLHAALERSARTLVDLERAYRDGELKVHYQVIVDGTSRRPVALEALLRWERPGGGILLPDAFLEVLEGSDLIHGVGEQVLARACADGAELLLRGHGLAVHVNVSARELSRPGLLAGVRRALGDSGLPAEMLVLEITETRLVTVNGSLLRDLLALRELGVRVAVDDFGTGYSALTHLVDLPVDMIKLDKGFVAEMADSPSARAVSTGVSAMAAGLGIMAVAEGVETEAQAALLVSMGYAHLQGYLFSRPRSMPDLLVELHGSEGLAPAAKGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAM1</accession>
    <name>A0A0Q8VAM1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Multidrug ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_09495</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894597.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52659">
        <property type="protein sequence ID" value="KRC52659"/>
        <property type="gene ID" value="ASE19_09495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="643917at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="53"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="127"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="157"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="237"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="280"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="19"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="334"/>
            <end position="569"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="368"/>
            <end position="375"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC52659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="578" mass="62206" checksum="1DA180CB561F814C" modified="2016-01-20" version="1">MLIRLLRTHLAPYRGWLTALVLLQLTSTVAMLYLPHLNADIIDKGIARGDNGYVLRIGAVMLAIALVQAACSMTSAWFGGQAAMAFGRDVRKRVFARIGSFSAREVSGFGAPSLITRATNDVQQVQMLAMMTCTMAVTIPIMMVGGVVMAMREDFGLSWLVVAVVPVLFLCIGIVVSQMVPAFRSVQERLDDVNRVLREQITGIRVVRAFVREPYETKRFDDANGDLTEVSLRAGRWMALMFPLVMGVSNIASVGVIWFGGHRVDSGQMEVGALTAFLSYLMQILMSVMMGTFMLMMVPRAAVSADRISEVLATDTSVVAPTAPVTEVHVSGHLDLEGVGLTYPGAEAPVLSGVTFSARPGQTIALIGSTGAGKTTLVNLVPRLLDATEGVVRVDDVDVRDLDPELLWSKIGLVPQRAFLFSGTIASNLRYGKPDATDEELWAALEIAQGADFVRDMPDGLDTAVAQGGTTVSGGQRQRLAIARALVRRPEIYLFDDAFSALDVATDARLRAALRPVTRDATVLIVGQRIATIRDADLILVLEDGEVVGQGTHDELLAGNETYREIAASQGVIEGEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAN1</accession>
    <name>A0A0Q8VAN1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_08835</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54148">
        <property type="protein sequence ID" value="KRC54148"/>
        <property type="gene ID" value="ASE19_08835"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004017">
        <property type="entry name" value="Cys_rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02754">
        <property type="entry name" value="CCG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="5">
        <location>
            <begin position="33"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="585"/>
            <end position="618"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="931" mass="97977" checksum="9875BBD4A953428F" modified="2016-01-20" version="1">MPGIVPEIRRHGATDVSDDAAVLAAYSSDASLYRVPPAAVVFPHAADEVRATLAAARELGLSVTARGAGTSVAGNAIGPGIVLDFSRHMNQVLSVDADAATAVVQPGVVQAQLQKAVASYGLKFGPDPSTSTRCTIGGMIGNDACGARSLAFGRTSHNTLGLRGFLADGTALVTGPDGWSADGDVLSRVEQVIAKDLATARTEFGTFGRHVSGLAVEHLLPERFNPTRALVGSEGTLAVLTEATVRLVRNPKHSLMIVLGFPDFPTAGHATPRVLEFAPSACEGIDRRIVDVILERRGPGAVPPLPAGDAWMFVELSADDPDEVRRQADLLAGAGLGVSALVVDDPRTADRLWKIRADGAGLAGRAPSGRPAWAGWEDAAVPPDRLGTYLTSFDALLDEHGLTAMPFGHFGEGCVHVRMDFAFDSPDGPDRYRAFVEDAADLVSSLGGSLSGEHGDGRARSELLPRMYSPAALALMSGVKKAFDPDDLLNPGIIVDAAPLTADLRYTSTAKLTKSLAMAYASDGGDFGQAVHRCTGVGKCRADNSGSGGVMCPSFQATREEIHSTRGRARLLQEIVNGDSDISWGSPAVHEALDLCLSCKGCASDCPTGTDMASYKAEVLHQTYKRRIRPRSHYVVGWLPRWAKVGSLTPRLANKSMDIDWVRTLALKASGVDTRRRMPSFARRTFRRTFSAPAGQTGTPVVLFVDSFTNHFAPHVADAAAAVLREAGYAPRITRHQECCGLPWISTGQLDGAARRLRSMVDALAADAKAGLPVVGIEPSCTAVLRHELTELVPGEDAAAVAGATVTLAELLARTDGWTPPDLSGVTVVAQPHCHHHAVMGWETDKALLERAGASVQAVAGCCGMAGNFGVEQGHYEVSLAVAEANLLPAVRQAPEGAVVLADGFSCRTQLDELAPTAQPLHLAELLASRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAS6</accession>
    <name>A0A0Q8VAS6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_09870</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894658.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52723">
        <property type="protein sequence ID" value="KRC52723"/>
        <property type="gene ID" value="ASE19_09870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044550">
        <property type="term" value="P:secondary metabolite biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="567"/>
            <end position="588"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="609"/>
            <end position="629"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="649"/>
            <end position="670"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="682"/>
            <end position="699"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="711"/>
            <end position="731"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="752"/>
            <end position="770"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="806"/>
            <end position="824"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding" evidence="4">
        <location>
            <begin position="122"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="domain" description="Carrier" evidence="5">
        <location>
            <begin position="471"/>
            <end position="527"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="854" mass="91192" checksum="F81C05A4A4C1F298" modified="2016-01-20" version="1">MGEGTVGAPLVAGFATDLARHGDRPALRTADRSVTYAELDRLAASSRDALEALTPAGSRHLVRLTPAPTIEFVVAWLAALTGGHTTLLTGDAGIAAAYATSMAYDEHGWCPTGVTAPELHPDLRLLLSTSGSTGSPKLVRLSADNLASNATAIASYLGLGAGDLALTTLPLDYCYGLSVLHSHLAAGAALLLDDRSVTEPALWADARRHGVTSFAGVPYTFDLLGAAGWPELPTLRQVTQAGGRMSPERVRTLAEQGRVEGWELVVMYGQTEATARMAWLPPHLTTTHPHAVGIAIPGGSLRIDPVEGAEPGVGELVYAGPNVMMGYAESPADLARGPELDELRTGDLARIGPDGLVEIVGRRSRFAKLFGQRIDLDRVQTLLALGGHEAGCAEAADAEQLVVAVPGAADGPALAEVAAAVVVDTGLPAHAVRVVPVDDLPRLPNGKLDTQAVARLEAVAEGGHDSPVRSLVRLYGRVLGRDLVGPQDSFVTLGGDSLSYVELSLRLERRLGRLPSDWQEHTIADLALLDGDPATGTTRQRRFARIDTTIPLRALAIVMIVGSHTNLWLLVGGAHVLLAVAGANFARFHLTDEHARQRLRRVGRAAARIAVPSVAWIGAVHLVTGDYPWRTVFLLNDLLGGARWSEPAWHFWFVEVALVLAVGAGLLTSVPRVMALERRHRFALAVGLTAVALVPRFWATASSYDGDVIHSSVFVAWLFLGGWAAAVARTVPQRALVSGLLLLGTWGFTGDTQRDLIIAIGVLTLVWLPTVPWPRALIGVTGTLASASLHIYLTHWQVYPHLENRWPLGGLLASLAIGVLAWRIGERIPSWTRLIERPRPHHYAPNHTIRQEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAT3</accession>
    <name>A0A0Q8VAT3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LLM class F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895651.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54219">
        <property type="protein sequence ID" value="KRC54219"/>
        <property type="gene ID" value="ASE19_08610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022378">
        <property type="entry name" value="F420_OxRdatse_MSMEG2249_pred"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03857">
        <property type="entry name" value="F420_MSMEG_2249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="13"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="348" mass="37454" checksum="14AEC041545A7F5B" modified="2016-01-20" version="1">MTELGFYTLAGEAESPRDLIDEVRLAEELGLGHCFISERLNTKEAATISGAVGAASTRIRIATAATNHNLRHPVVTAAFATTMHRLTGGRFTLGLGRGVVPMQKAFGIPAITTAQLEEFAGLARRLFRGETIVGHDGAIGSYPALRLSPTFDEDVPLGLVAFGPQSLALGGRAFDQVVLHTFFTDETLKRSVATVKEAAEQAGRDPDQVKVWACLATVGEHLGEEQRLRKTVGRLATYLQGYGDLMVRTNDWDPAALRRFREDPVVQSFYVGGSMKVIDSPLTTLDKIEHIATLLPAEWTAPAATGTPEQCARTIREQLDIGADGVILHGASPAELAPILPAYRATRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBU4</accession>
    <name>A0A0Q8VBU4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH_17 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894382.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54698">
        <property type="protein sequence ID" value="KRC54698"/>
        <property type="gene ID" value="ASE19_04240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2076478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041657">
        <property type="entry name" value="HTH_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12728">
        <property type="entry name" value="HTH_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_17" evidence="1">
        <location>
            <begin position="17"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="79" mass="8800" checksum="989FCEA3A9547B6C" modified="2016-01-20" version="1">MTTHSPNQSSPAGLDQLLGVEELASYLGVPVKTVYDWRQTGRGPCAIRVGRHLKYAVTDVRHWLDSHRDRQSDPASNEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC93</accession>
    <name>A0A0Q8VC93_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Sigma70_r2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_05325</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54878">
        <property type="protein sequence ID" value="KRC54878"/>
        <property type="gene ID" value="ASE19_05325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="201"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="7"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="126"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="218"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="435" mass="46351" checksum="29ADC1E6C908D65E" modified="2016-01-20" version="1">MHDLDALYAASYRRLVVQMYALCGDLADAEDAVQEAFITALRKRRTLQSVLNPEAWIRTVALRRLHGGWRHRAVVRHHQALDRGPAPVAEIGPEHVALVSALAQLDVGQREVVVLHHLADRTVDEIATTSGSRPAPSSPGWAGDASGSPSCWPTRSRPPRGRNRAMADWDGLRELAHDVTPPDFASLEHTARRRQHRARGLVGALAAVVLVAGGIGIATHGDGRDDSQPVKEPTRSPSDLPEGVHALPAAPAGEDFVDVPAGRYRIDLGEDISYDVDLPDGSSAHDDGLFLSSAAVVLKVELAGDDYGVPRDPCAGGIVPVGPGVDALVAAMAALPVFEVSAPEPVRLGGASGYYLEADVPRAYDASRCSGDGAVQLPGRTATVVGAPPPYHGRWWVLDVGGHRVVVQQNCWDCTRATLQRAANDPRSVTFTSTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCD9</accession>
    <name>A0A0Q8VCD9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05390</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894191.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54890">
        <property type="protein sequence ID" value="KRC54890"/>
        <property type="gene ID" value="ASE19_05390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1817663at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038056">
        <property type="entry name" value="YjbR-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142906">
        <property type="entry name" value="SSF142906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="158" mass="17470" checksum="86325BA175D6E0B9" modified="2016-01-20" version="1">MAHPIMFTDDDPGLAELRRICLALPGAEERISHGRPTFRAGKIFAAFGGSLASAGGERSDRRQRIRPGEHRMVPSAFIFTPDAVDLPAIDADERFFVPAYYGPYGGRAIDLDDPALDWSEIAELADASYRRVAPRRLLAELDARTVHRTEYPYPPASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD58</accession>
    <name>A0A0Q8VD58_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05285</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55141">
        <property type="protein sequence ID" value="KRC55141"/>
        <property type="gene ID" value="ASE19_05285"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="16"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="209" mass="22780" checksum="B1258898E1BBD9CC" modified="2016-01-20" version="1">MTTVEAGPSRLERRKAETRREIIDAAFTCFAEQGYHATGIADIAARLGIGHGTFYRYFENKRDIVEHVIDDLVERIVATLGAENAPDAVSTLDDYRAQSERIGAGLARIFSEDPRVPQLLLSAAGIDDAMRERMLDLFAATAPLTAAYLEHGVHHGYLRADLDVESTAQAINGMILGSVLAALRDPSPERQARLSAAIRAVMYDGIAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDG5</accession>
    <name>A0A0Q8VDG5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RNA helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_04920</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the DEAD box helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55131">
        <property type="protein sequence ID" value="KRC55131"/>
        <property type="gene ID" value="ASE19_04920"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000629">
        <property type="entry name" value="RNA-helicase_DEAD-box_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00039">
        <property type="entry name" value="DEAD_ATP_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 3 7" id="KW-0347">Helicase</keyword>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="5">
        <location>
            <begin position="24"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="6">
        <location>
            <begin position="231"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="381"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="402"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="483"/>
            <end position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="498" mass="53976" checksum="827D499380D8980B" modified="2016-01-20" version="1">MPLICDALDRAGITHPFAIQEMTLSVALMGTDLIGQARTGTGKTLAFGIPVIQRSVAPSDPDYAEIPQGKPQALIVAPTRELALQVSSDIEIASRDRGLRVLTIYGGVGYDTQIEALETGVDIVIGTPGRLIDLANRKVLDLSHVHALVLDEADEMLDLGFLPDVEKLLRLTPETRQTMLFSATMPAAIVSLARIHMRHPMNIRAESSYENATVPATAQFIYLAHDLDKPEIIGRVLQAEDADKVVVFTRTKRQAQRVADDLVERGFKASPLHGDMAQVAREKAMTKFREDKIRVLVATDVAARGIDVSGVSHVINYTCPEDDKTYVHRIGRTGRAGASGIAITLVDATDVHRWKMINKALDLPFDEPLETYSTSEHLFHDQGIAPGTKGRIVPPAPPAPKADRGERGERGERGERSGDRERRSGGDRNRTRTRTRTRSGQPVEGEATAAAPAEDATSPAGEGSERPAGASRNRRRRRRPAGGGQTGQQSGAAETQTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDN6</accession>
    <name>A0A0Q8VDN6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10400</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894749.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52816">
        <property type="protein sequence ID" value="KRC52816"/>
        <property type="gene ID" value="ASE19_10400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1793636at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014487">
        <property type="entry name" value="DUF3151"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11349">
        <property type="entry name" value="DUF3151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017349">
        <property type="entry name" value="UCP017349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="140" mass="15016" checksum="F7792CDE7213D404" modified="2016-01-20" version="1">MSLTPGADLMAGPPPTHLPVDPAAELLAAGETPAAVVRRLPASPLAWATLAEQARDGGADDVTVYAYSRVGYHRSLDLLRRNGWKGNGPVPWEHEPNRGFLRALGLLAISARAIGETDEWERCSAFLRDSSPTAYDELLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE45</accession>
    <name>A0A0Q8VE45_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltransf_11 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08100</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895457.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54025">
        <property type="protein sequence ID" value="KRC54025"/>
        <property type="gene ID" value="ASE19_08100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1664438at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="67"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="24098" checksum="503C183599CCAF86" modified="2016-01-20" version="1">MIRAAVSKVPGLGGWSDDPLWASFYDWTVEHPRAGGAIWRAGIQSNLRLLYRAAAEIGRQPAGARILDIPCGGGVALRGLREGQGVEYVAADISQTMLDRTMRAAEERGVADQVEPRVADVGDLPFADGEFDLVVTFTGLHCFPDPARAVIEMSRVLRPGGVLTGSALLNDALRYVPLRRVGRMAGLLGPGCTSRDLEAWLAGQGIADVVIEKSGAIGYFRGIKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE48</accession>
    <name>A0A0Q8VE48_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">GH16 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11100</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894877.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52944">
        <property type="protein sequence ID" value="KRC52944"/>
        <property type="gene ID" value="ASE19_11100"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000757">
        <property type="entry name" value="GH16"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00722">
        <property type="entry name" value="Glyco_hydro_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51762">
        <property type="entry name" value="GH16_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359954" description="GH16 domain-containing protein" evidence="1">
        <location>
            <begin position="27"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="GH16" evidence="2">
        <location>
            <begin position="27"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51762"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="297" mass="32181" checksum="9DB92A8E77F87781" modified="2016-01-20" version="1">MLRLRLLCAVGAITASVTALAPVATAPTSAAPPKQQACGGERLAKPGGGRYTCSFEDNFDGSALDRTKWMVQDTSVTGVPVGQNEGCYVDDPDNVSVGSGVLRLTVRKESAPFVCQSPYGAFTTDISAATVVGYGKFSQTYGRFEFRARMPETTIQGIHSALWLYPQQHTYGAWPASGEIDVAEWFSGDPGKVYPSVHYTGENPLQSTGFNCPVAGASSQFHDYAVEWTSTSMRFLYDDRVCFEHSWLDASPLAGSAPFDQPFYLVMTQVFGGGWNSVVADTPTSATMSVDWVRVWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEI9</accession>
    <name>A0A0Q8VEI9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hydroxymethylglutaryl-CoA synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08680</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895553.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54121">
        <property type="protein sequence ID" value="KRC54121"/>
        <property type="gene ID" value="ASE19_08680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="886783at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002878">
        <property type="entry name" value="DUF35_OB-fold_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022002">
        <property type="entry name" value="DUF35_Znr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12172">
        <property type="entry name" value="DUF35_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01796">
        <property type="entry name" value="OB_aCoA_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF35_N" evidence="2">
        <location>
            <begin position="332"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="domain" description="OB_aCoA_assoc" evidence="1">
        <location>
            <begin position="369"/>
            <end position="424"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="442" mass="46187" checksum="625BE722C254EC41" modified="2016-01-20" version="1">MTIGVLAYGAYLPSYRLGADSGVRGRRVVASFDEDATTMAVEAARGLPAPGSLWWASTTPPYLDKTNAAAVHAALRLPSSVPAADLVGSARSTFAALRAALATGGLVVAADVRVGKPGSLDEKGGGDGAAALLLGEGPAIAEVLGSAGDTLELLDRWRDPQRTTGEQWEERFGFEQYAGLVRSVAARLLDDAGLAEADHVVVTSGNAGITKRAGALVKGALSSSGSPIGFSGAADPLLGLAAVLDTAGPDETILVLSAVDGCDGLLLRTTPLLPSHRAARSVAAQLETGREVRYPTYLSWRGLLERELPRRPEPDRPAGPPSYRAGEWKFGFTGSRCTACGFLHLPPLRVCRSCSAVDAMEPESVADLTGKVATFTIDRLAFSPSPPVVDVVVDFEGGGRTTLEVADADPGLIDVGTEVGLVFRRLFTAGNVHNYFWKARVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEL5</accession>
    <name>A0A0Q8VEL5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sterol carrier protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08780</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895569.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54137">
        <property type="protein sequence ID" value="KRC54137"/>
        <property type="gene ID" value="ASE19_08780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1811496at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003033">
        <property type="entry name" value="SCP2_sterol-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02036">
        <property type="entry name" value="SCP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SCP2" evidence="1">
        <location>
            <begin position="23"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="134" mass="14292" checksum="E74B5CFA2FDB3500" modified="2016-01-20" version="1">MAFKDADEVRRYIGGVFQAGFDDPEIGPKMAATGIVVKFEFTEPDAAVVIDMGKQEIGEGAGMAEPVATMRMTADLGSAYWQGKVNLPLSMARGKIKVDGNVASLLKLAPLGKKLFPKYVATLEADGRQDLVVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VET0</accession>
    <name>A0A0Q8VET0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_08365</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54067">
        <property type="protein sequence ID" value="KRC54067"/>
        <property type="gene ID" value="ASE19_08365"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009366">
        <property type="term" value="C:enterobactin synthetase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008897">
        <property type="term" value="F:holo-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009239">
        <property type="term" value="P:enterobactin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.470.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008278">
        <property type="entry name" value="4-PPantetheinyl_Trfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037143">
        <property type="entry name" value="4-PPantetheinyl_Trfase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041354">
        <property type="entry name" value="4PPT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003542">
        <property type="entry name" value="Enbac_synth_compD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38096">
        <property type="entry name" value="PTHR38096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17837">
        <property type="entry name" value="4PPT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01648">
        <property type="entry name" value="ACPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01399">
        <property type="entry name" value="ENTSNTHTASED"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56214">
        <property type="entry name" value="SSF56214"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="4PPT_N" evidence="3">
        <location>
            <begin position="23"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="domain" description="ACPS" evidence="2">
        <location>
            <begin position="92"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01648"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="228" mass="24668" checksum="744760801FD32617" modified="2016-01-20" version="1">MRETFEDADPELVLMESERAQLGRVGEERAREFATARACARAALSDIGHPPVPLLRGEHGHPDWPHGVVGSLTHCRGYRAAAVAPAAQWRAVGIDAEPHEPLPEGVLSFIASPEESALVAQLMAARRGIHWDTVLFSAKESIYKAWFAFTGERLGFGDARVVIDGSRRTFAARILAAPSTGQGRRLPRRDDGVSGRIGVSRGLVLTAVSIGWGRSSSEPPAFRDERAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEX4</accession>
    <name>A0A0Q8VEX4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Serine--tRNA ligase</fullName>
            <ecNumber evidence="7">6.1.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Seryl-tRNA synthetase</fullName>
            <shortName evidence="7">SerRS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Seryl-tRNA(Ser/Sec) synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">serS</name>
        <name evidence="11" type="ORF">ASE19_12195</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + L-serine + tRNA(Sec) = AMP + diphosphate + H(+) + L-seryl-tRNA(Sec)</text>
            <dbReference type="Rhea" id="RHEA:42580"/>
            <dbReference type="Rhea" id="RHEA-COMP:9742"/>
            <dbReference type="Rhea" id="RHEA-COMP:10128"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78533"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.11"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + L-serine + tRNA(Ser) = AMP + diphosphate + H(+) + L-seryl-tRNA(Ser)</text>
            <dbReference type="Rhea" id="RHEA:12292"/>
            <dbReference type="Rhea" id="RHEA-COMP:9669"/>
            <dbReference type="Rhea" id="RHEA-COMP:9703"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78533"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Aminoacyl-tRNA biosynthesis; selenocysteinyl-tRNA(Sec) biosynthesis; L-seryl-tRNA(Sec) from L-serine and tRNA(Sec): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer. The tRNA molecule binds across the dimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="7">Consists of two distinct domains, a catalytic core and a N-terminal extension that is involved in tRNA binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the class-II aminoacyl-tRNA synthetase family. Type-1 seryl-tRNA synthetase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.11" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895060.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53133">
        <property type="protein sequence ID" value="KRC53133"/>
        <property type="gene ID" value="ASE19_12195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="353391at2"/>
    <dbReference type="UniPathway" id="UPA00906">
        <property type="reaction ID" value="UER00895"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004828">
        <property type="term" value="F:serine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016260">
        <property type="term" value="P:selenocysteine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097056">
        <property type="term" value="P:selenocysteinyl-tRNA(Sec) biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006434">
        <property type="term" value="P:seryl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00770">
        <property type="entry name" value="SerRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00176">
        <property type="entry name" value="Ser_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002317">
        <property type="entry name" value="Ser-tRNA-ligase_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015866">
        <property type="entry name" value="Ser-tRNA-synth_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042103">
        <property type="entry name" value="SerRS_1_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033729">
        <property type="entry name" value="SerRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010978">
        <property type="entry name" value="tRNA-bd_arm"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11778">
        <property type="entry name" value="PTHR11778"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02403">
        <property type="entry name" value="Seryl_tRNA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001529">
        <property type="entry name" value="Ser-tRNA-synth_IIa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00981">
        <property type="entry name" value="TRNASYNTHSER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46589">
        <property type="entry name" value="SSF46589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00414">
        <property type="entry name" value="serS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="10">
        <location>
            <begin position="139"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Serine binding" evidence="7">
        <location>
            <begin position="231"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="8">
        <location>
            <begin position="60"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="262"/>
            <end position="264"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="278"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="285"/>
        </location>
        <ligand>
            <name>L-serine</name>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="349"/>
            <end position="352"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="383"/>
        </location>
        <ligand>
            <name>L-serine</name>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC53133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="426" mass="46679" checksum="22ACBF051A6C0878" modified="2016-01-20" version="1">MIDPRILRDEPDRVRASQAKRGASPDVVDRALEADAARRTAIADFEEKRAAQKAFGKQVAQAKGEEKQALLEEVKQLAAQVKELEAAQTAADEAWTSALKAIPNVVAEQTPTGGEDDFVVLEEIGTPRDFAAEGFEPRDHIELGRMLGAIDLERGAKVSGSRFYFLTGVGAQLELALVNLAMEQARNAGFTQVIAPSLVRTEAMEGTGYLDQGGGEDIYRIEGEDLYLVGTSEVPMAAYHSKEILDGASLPRRYASFSPCFRKEAGSHGKDTKGIIRVHWFDKVEMFVYTTLEDAAAEHERLLAWEREFLDKLELAYRVVDIAAGDLGSSAIRKFDCEAWIPTQGKYRELTSTSNCTDFQTRRLDTRGRFGEKTGPVATLNGTLTAITRAIVAVLETHQQADGSVRVPKALQPFMGGLEVLTPVSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEY4</accession>
    <name>A0A0Q8VEY4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11920</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53089">
        <property type="protein sequence ID" value="KRC53089"/>
        <property type="gene ID" value="ASE19_11920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="961884at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="16"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="418"/>
            <end position="493"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="518" mass="55327" checksum="E7B7654B14EB30D9" modified="2016-01-20" version="1">MAMNEQLKPTCVDAVEKIAAAQPGHTAVIDSGVTWSYGELVDRIRAWAGRLADAGMQPGQRIALVAESSAHYLAAALGVWRAGGVLVTVYPSSSRSDLEYAITSSDPALLIVDDDFDQDLLGSLRGRIPTALLGAADVPPVRHDAAPNPEGLREPLHLICFSSGTTSRPKAIMLSATAVLNCAQTYAEVWRLSAEDRGIVCLPMAWMYGLASTSLALLHAGATVIVVRRARPEPIAAAAAEHRATFLAGVSNTFAKLVQHADHQQFDLSGFATLRLCISGGEPRNEPAFERWLELTGTAVLDAYCASECLPLVTYDPVENQIPRLGSAGKVVPRSQLRVVDPGGHDVAVGDVGEALSTGPGLMLGYWQDPEETRAALTEDGWYRTKDLVRVDEDGFVYVVGRLSDLIIRAGVNISPAEVERVLRTHPDVADVAVVGLADDLYGQQVAAAVVPRQQGVFDSEALAVFARDHLTSYKVPSTFVRVDQLPLNTNGKVSRRDVAQELAATVVPGSQATGESR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFY9</accession>
    <name>A0A0Q8VFY9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13750</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897097.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53405">
        <property type="protein sequence ID" value="KRC53405"/>
        <property type="gene ID" value="ASE19_13750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1995959at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022062">
        <property type="entry name" value="DUF3618"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12277">
        <property type="entry name" value="DUF3618"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="68" mass="7306" checksum="10BDE0BA6823C201" modified="2016-01-20" version="1">MTHAPSHRAETAQIEADIEHTREQLAATVDLLSARVSARTHQAALVAGVLAGVVVIGLVAARLWSRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFZ7</accession>
    <name>A0A0Q8VFZ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14050</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897047.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53456">
        <property type="protein sequence ID" value="KRC53456"/>
        <property type="gene ID" value="ASE19_14050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1918294at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007922">
        <property type="entry name" value="DUF721/UPF0232"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05258">
        <property type="entry name" value="DciA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="198" mass="21061" checksum="003A04151E68156F" modified="2016-01-20" version="1">MADETPADEAAEAPEPPESPEEHRADGLDLARSQAAGAGAAGTTPARRRFPRSPDGRATPGRFGSRGRGEAQFSGARPDGRDPQGLGKEVDRLVGERGWGLDLQVRGVFGRWTEIVGEEIGAHSTPETLSEGTLVVRTDSTAWATQLKLLAGTLVQRLNKELGDGTVTLVEVLGPHAPSWKHGRRGVRDGRGPRDTYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHF1</accession>
    <name>A0A0Q8VHF1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carboxymuconolactone decarboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895256.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53825">
        <property type="protein sequence ID" value="KRC53825"/>
        <property type="gene ID" value="ASE19_06975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1792151at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051920">
        <property type="term" value="F:peroxiredoxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029032">
        <property type="entry name" value="AhpD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003779">
        <property type="entry name" value="CMD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02627">
        <property type="entry name" value="CMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69118">
        <property type="entry name" value="SSF69118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMD" evidence="1">
        <location>
            <begin position="42"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="142" mass="15904" checksum="8A31079DF9A0621B" modified="2016-01-20" version="1">MSDQSDQDDQGDKFADLPEARARGLRKMEEVYGFDMTDGTGDFFRYTAEHLFGDIWQRPGLSTRDRRLFLIGMLVGQRANDVLGIQVPAALANGELDEEALRELVILACHYDGWPNGSRMNSVVEDAIAKAERARAKARPTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHM4</accession>
    <name>A0A0Q8VHM4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Phosphate transport system permease protein PstA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_02135</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893054.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57018">
        <property type="protein sequence ID" value="KRC57018"/>
        <property type="gene ID" value="ASE19_02135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1763210at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035435">
        <property type="term" value="P:phosphate ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005672">
        <property type="entry name" value="Phosphate_PstA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00974">
        <property type="entry name" value="3a0107s02c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="60"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="114"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="156"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="185"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="235"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="303"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="8">
        <location>
            <begin position="118"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC57018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="331" mass="34574" checksum="B11E014284598D67" modified="2016-01-20" version="1">MTLLGAVLGSVATTWVAYSQVLPFSGSVGFVVIWYVVFVAFYAGLTALTHPRRIVVDRVVAAVVMAAPALIGLALLSTVLTTVWKGMPALTHWNFFVDDMAGVRADDPFTKGGIAHALVGTVIEVCIAVAIAMPLGVATAVYISEVGGKGALLVRTVVEAMTALPSIVAGLFIYTVWIVNLGMETSGLAASLALAVMALPIMARASEVVLRVVPNGLREASYALGAGRWQTVWKVVLPTARPGLATALILGVARAVGETSPLLLTSGASTFFNADPTHNPMNSLPLFVYASVSTGSPEMEQRAYAGAAVLLAVVLSLFLLARLAARGRKNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHP9</accession>
    <name>A0A0Q8VHP9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03185</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892846.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56827">
        <property type="protein sequence ID" value="KRC56827"/>
        <property type="gene ID" value="ASE19_03185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2048416at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019675">
        <property type="entry name" value="DUF2550"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10739">
        <property type="entry name" value="DUF2550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="17307" checksum="53557D43A585DD49" modified="2016-01-20" version="1">MTWWEWLLDACGALLLLCVLYGAGLIVRRRLLSRHGGTFELSHRYRTDRPERGWVLGLGRYSGETLEWFRVFSISPWPKHSWSREELEYDGRREPLGAEQASLYPDHLVIRCQSPDGVVELAMSVASLTGFQSWLEAMPPGTDWNRIKGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHR4</accession>
    <name>A0A0Q8VHR4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Malate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_03430</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="5">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="5">Divalent metal cations. Prefers magnesium or manganese.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the malic enzymes family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56868">
        <property type="protein sequence ID" value="KRC56868"/>
        <property type="gene ID" value="ASE19_03430"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004471">
        <property type="term" value="F:malate dehydrogenase (decarboxylating) (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015884">
        <property type="entry name" value="Malic_enzyme_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012301">
        <property type="entry name" value="Malic_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037062">
        <property type="entry name" value="Malic_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012302">
        <property type="entry name" value="Malic_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001891">
        <property type="entry name" value="Malic_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00390">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03949">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000106">
        <property type="entry name" value="ME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01274">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00919">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00331">
        <property type="entry name" value="MALIC_ENZYMES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="malic" evidence="7">
        <location>
            <begin position="25"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="domain" description="Malic_M" evidence="6">
        <location>
            <begin position="170"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="4">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="144"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000106-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000106-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM01274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC56868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="398" mass="41190" checksum="34C28FFFF505D523" modified="2016-01-20" version="1">MLFVAADLPTPHPRAGEPVFDLHLGGKMATVPTADVSTKDQLSLAYTPGVAEVCEAIAADPELTRHYTWVPNTVAIVTDGTAVLGLGDIGPAAAMPVMEGKAVLFKQFGGVDGIPICLATTDVEEIIETVVRLAPSFGGINLEDISAPRCFEIEDRLKEALDIPVFHDDQHGTAVVTLAALVNALKLTGRTAESTRVVISGAGAAGVAIAKILLAAGVKDIAVTDRKGVVSSDRTDLTASKKALAELTADLCGRRGTLAEAFDGADVYIGVSGGTVPEEVVATMADDAIIFAMANPNPEVHPEVAHRHARVVATGRSDFPNQINNVLAFPGIFRGAFDVHASSITENMKVAAADALAALVGDDLAEDFVIPSPFDPRVGPAVAAAVAEAARRDGVARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHR6</accession>
    <name>A0A0Q8VHR6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_04060</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TMEM86 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893001.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56984">
        <property type="protein sequence ID" value="KRC56984"/>
        <property type="gene ID" value="ASE19_04060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1768508at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012506">
        <property type="entry name" value="YhhN"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31885">
        <property type="entry name" value="PTHR31885"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07947">
        <property type="entry name" value="YhhN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="231" mass="23717" checksum="B23BA5CF277C7802" modified="2016-01-20" version="1">MRTSTRLQLAYGALAAADTLLAGSTSRWAHRARHVTKPLLMPLLGASLATDPAARTSPLRTSTLVAQAAGWGGDVLLLCEGPKAFAAGAGSFGIGHLAYISGLARHRDAGTPITANRVARVIAGTWAVSGPVMAIAAARKERALGPTVLGYSAVLSSMTAAANHLSPELPRDARLLTAAGAGLFLLSDSVLGSRTFVLTDPPARMESVVMATYTAGQLLLCEGARRAGHKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHT3</accession>
    <name>A0A0Q8VHT3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_03420</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57054">
        <property type="protein sequence ID" value="KRC57054"/>
        <property type="gene ID" value="ASE19_03420"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004638">
        <property type="entry name" value="EmrB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00711">
        <property type="entry name" value="efflux_EmrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="19"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="58"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="90"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="118"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="148"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="172"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="203"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="234"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="275"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="340"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="364"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="403"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="445"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="20"/>
            <end position="472"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC57054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="481" mass="50402" checksum="574D6DC25C11C624" modified="2016-01-20" version="1">MADFEQEFSSAGTPGRTPLVIKLLVAATFVVILNETTLVNAVPTLMSDFKITESTAQWALTVFMLTMAAVIPVTGWFLQRVTTRTAYATAMITFSTGTLIAAIAPTFGFLLVGRVVQAGGTAVMMPLLMTTLMTVVAAQDRGRVMGQVTLAMSCAPAMGPAVSGVLLELGSWRFIFVAVLPIAILVGLFGFRQLENVGETTSSPVSWTSVVLAAGGFSSFVFGLSKVGNAEWPLPTALIGGGVVLIAAFAVLQLRLQRLERPLMDLRTLRHRNYTVSLVLMSAGFMAFLGSMILLPLYLQNLRGLTELQTGLLVMPGGLAMGLLGPQVGKAYDRIGARPLVIPGAVAMVALLFGMSRIGVDTPYAAILALHVALMVSLAMIFTPVFTIGLGDLSPQLYSHGSSLLGTLQQVSGAIGTALLVVIMTNRTESLAADGVNDADAFMGGLQWAFFAGAVIGVVVIAMALLLPSKANAPEGAHGGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHW7</accession>
    <name>A0A0Q8VHW7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PpiC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_03780</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892949.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56932">
        <property type="protein sequence ID" value="KRC56932"/>
        <property type="gene ID" value="ASE19_03780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1838755at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000297">
        <property type="entry name" value="PPIase_PpiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13145">
        <property type="entry name" value="Rotamase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50198">
        <property type="entry name" value="PPIC_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0697">Rotamase</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5007784324" description="PpiC domain-containing protein" evidence="2">
        <location>
            <begin position="24"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="domain" description="PpiC" evidence="3">
        <location>
            <begin position="178"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="331" mass="35294" checksum="D9F2B5B71FEB3820" modified="2016-01-20" version="1">MRQRLVLAVVAVLAVVGAGLAVARPWSDEVPDGTAFRVGDRAVTVDELDARNDSLRAMYGIQEPLDGKELDAFRRQAAKSMAISIVLDRAVAEAGIDVPDAEVDAAVTSFVDNRFDGDRDQFLDALGNVNTSEDAVRTEVRRQLELRELLDEVAGDVVISDADVRSAFAQRRASLATPERRVVSNLVVSSEAEARKVRRRLDAGADVAVLARQVSIDAATRDKGGRLGAVARADLLPAVAEAVFATPVGRAYGPVEGSQGWNVGVVTAVRAPVAATLAGSAATLRTALTSEKEQAAWSDWLAGELRAADVAYEASYRPSDPYDVSAWEEQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI12</accession>
    <name>A0A0Q8VI12_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Proline--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.15</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Prolyl-tRNA synthetase</fullName>
            <shortName evidence="8">ProRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">proS</name>
        <name evidence="10" type="ORF">ASE19_02995</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys-tRNA(Pro) is not edited by ProRS.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro)</text>
            <dbReference type="Rhea" id="RHEA:14305"/>
            <dbReference type="Rhea" id="RHEA-COMP:9700"/>
            <dbReference type="Rhea" id="RHEA-COMP:9702"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78532"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.15"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2 8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="8">Consists of three domains: the N-terminal catalytic domain, the editing domain and the C-terminal anticodon-binding domain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.15" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892818.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56799">
        <property type="protein sequence ID" value="KRC56799"/>
        <property type="gene ID" value="ASE19_02995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="665824at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004827">
        <property type="term" value="F:proline-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006433">
        <property type="term" value="P:prolyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00861">
        <property type="entry name" value="ProRS_anticodon_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00779">
        <property type="entry name" value="ProRS_core_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.960.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01569">
        <property type="entry name" value="Pro_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002316">
        <property type="entry name" value="Pro-tRNA-ligase_IIa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004500">
        <property type="entry name" value="Pro-tRNA-synth_IIa_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023717">
        <property type="entry name" value="Pro-tRNA-Synthase_IIa_type1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044140">
        <property type="entry name" value="ProRS_anticodon_short"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033730">
        <property type="entry name" value="ProRS_core_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036754">
        <property type="entry name" value="YbaK/aa-tRNA-synt-asso_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007214">
        <property type="entry name" value="YbaK/aa-tRNA-synth-assoc-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04073">
        <property type="entry name" value="tRNA_edit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01046">
        <property type="entry name" value="TRNASYNTHPRO"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55826">
        <property type="entry name" value="SSF55826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00409">
        <property type="entry name" value="proS_fam_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="9">
        <location>
            <begin position="35"/>
            <end position="486"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC56799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="589" mass="64076" checksum="44677336FEF5F571" modified="2016-01-20" version="1">MLMRMSTLFVRTLREDPSDAEVPSHRLLVRAGYIRRAAPGIYTWLPLGLKVLAKVERVIREEMDAIGAQEVSFPALLPREPYEATNRWTEYGDGIFRLKDRKDADYLLGPTHEEMFTLLVKDMYSSYKDLPLSLYQVQTKYRDEARPRAGLLRGREFIMKDSYSFDIDDAGLEASYQAHRDAYVRIFDRLGFDYVIVKATAGAMGGSKSEEFLANAAVGEDTYVRCTKCDYAANVEAVEVRAPAPVSYDGVPAAHAEDTPDTPTIETLVDHLNAAFPREDRPWAAGDTLKNVVVVLKHPDGTREPLAIGLPGDREVDQKRLEGQLEPIEVEAMGEAEFARHPALVKGYIGPAALGEEGASGIRYLLDPRVAEGTRWVTGADEAGRHVIDLVAGRDFTGDGTIEAAEVRDGDACPNCDDGTLESARGIEMGHVFQLGRKYAEALDLKVLDENGKLVTVTMGSYGVGVSRAVAAIAEDTLDEIGLCWPREIAPADVHVVAAGKDQAVFDAAEALVAELLSAGVDVIYDDRAGKISPGVKFKDAELLGVPTIVTVGRGVADGVIEVKDRRTGEKQELALTGAADAIRTIVGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIC7</accession>
    <name>A0A0Q8VIC7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Betaine-aldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_06005</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894079.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54995">
        <property type="protein sequence ID" value="KRC54995"/>
        <property type="gene ID" value="ASE19_06005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="744602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="4">
        <location>
            <begin position="29"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="478" mass="51140" checksum="9398D2D72108F4A1" modified="2016-01-20" version="1">MAFEYAPAPESRSIVDIKPSYGLFIDGEFVDGRGSSFKTINPATEETLAEIAEASEADVDLAVRAARRAFRGWSRMSGKERAKYLFRIARIIQERGRELAVLESIDNGKPIKESRDVDVPVVAAHFFYYAGWADKLSYAGLGPDPQPLGVAGQVIPWNFPLLMLAWKVAPALACGNTVVLKPAETTPLTALLFAEICQQADLPPGVVNIVTGAGTTGQAVVSHPDVDKVAFTGSTDVGKAIARAVAGSDKKVTLELGGKAANIVFDDAPMDQAIEGIVGGIFFNQGHVCCAGSRLLVQESVADEVLARLKRRMGTLRVGDPLDKNTDVGAINSAEQLARIRELSDIGESEGAERWAPECALPSSGFWFPPTVFTGVTQAHRIAREEVFGPVLSVLTFRTPAEAVEKANNTPYGLSAGVWTEKGSRILHMASQLRAGVVWANTFNKFDPASPFGGYKESGYGREGGRQGLAAYLKGADL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIE6</accession>
    <name>A0A0Q8VIE6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ferredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_08890</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895589.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54157">
        <property type="protein sequence ID" value="KRC54157"/>
        <property type="gene ID" value="ASE19_08890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1873445at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001080">
        <property type="entry name" value="3Fe4S_ferredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00352">
        <property type="entry name" value="3FE4SFRDOXIN"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="2 4" id="KW-0408">Iron</keyword>
    <keyword evidence="3 4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU368020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="64" mass="6816" checksum="1B273C7926A9A9DA" modified="2016-01-20" version="1">MRLAIDYDKCTGLGLCEAEAPDVFEVQADGTLLCLDENPAETLRAEVEAACASCPTEALRIIEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIU6</accession>
    <name>A0A0Q8VIU6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06760</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53794">
        <property type="protein sequence ID" value="KRC53794"/>
        <property type="gene ID" value="ASE19_06760"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="26"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="408" mass="42944" checksum="6F4F502A255C5023" modified="2016-01-20" version="1">MVALFVLVAWVGGIVQTGGALPGKRYTEVKAQFEDVGILKPGKEVKQNGLRVGTVSDIQIVDGIAEVTLRLDGNVEVFKDASAFVGNFSALGKKYVGFDPGTAEAGPLGDSPIPVAATTSSTSLEDVLSALDPKTRAALRSAVGSLATGLTGHSKDLQVVLNASPQLLRNLKTVMRVAGSDATDIDSLLVTADRLVNRFNGRTAQIEGLVRNVDRTVQAVGVDDGRPLEETLAKLPDALDSTGKALDDLYRPLGDAEVALRKLNPGARDLGLATPDLRAFLRESPEALDKVPGVADAANPALRALDTTVEDARPLVRPLSGSLNSLATLLQPFVPYVPDVGRFFSQNDLLSGILDGDQNQHYFAAQLTGVGLFSIGGAVDPLYRAEYYPCPGTAWNKATVTNCKSGAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKD5</accession>
    <name>A0A0Q8VKD5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_04360</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54721">
        <property type="protein sequence ID" value="KRC54721"/>
        <property type="gene ID" value="ASE19_04360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="49"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="74"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="98"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="127"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="170"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="218"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="247"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="278"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="302"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="326" mass="32951" checksum="270CEAEA25C6D496" modified="2016-01-20" version="1">MSPKRGRPDPAVLLEKYALAGMFILLCVVFANMSSTAETFPTVANIKNVLGGESVIAIAALASILPLTCGQFDLSVGAVIGLSSIVGASAVATHDLPVAVAVLAGVLAGSLVGAFNGWLVAYRGVNALIATLGTSTLVAGLVSLYTDNQIISVGIPESLTNLGAGDLLGIPRPVYAIAIVALFVYYLLRHTPYGRYLASVGASPSSARLVGLNVPRMILSSFVLSGALSGIAGILLLARAGTANPQVGPGFTLAALSAAFLGATAIRPGTFNVPGTLLGVLFVAISVNGLVLAGTADWVEPTFNGVALLVAVTLSTAIARRRAGQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKN0</accession>
    <name>A0A0Q8VKN0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">ATP-dependent Clp protease proteolytic subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04840</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the peptidase S14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894280.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54801">
        <property type="protein sequence ID" value="KRC54801"/>
        <property type="gene ID" value="ASE19_04840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1728970at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07017">
        <property type="entry name" value="S14_ClpP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001907">
        <property type="entry name" value="ClpP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023562">
        <property type="entry name" value="ClpP/TepA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10381">
        <property type="entry name" value="PTHR10381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00574">
        <property type="entry name" value="CLP_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00127">
        <property type="entry name" value="CLPPROTEASEP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="208" mass="22558" checksum="6F9E77299954121D" modified="2016-01-20" version="1">MTDDQRPRMFDDRRRRELHQQRVLVLDGALDDDNGLVLATQLLGLAAEDPASEIALWIHSPGGSVPAMLAIRDVMRLVPCDVSTLALGIACSAGQFLLSSGTPGKRRALPHARILMHQGSAGIGGTAADVELQAEDLRHMRDTVLGLIAEDTGQPIERVFEDSLRDRWYTATEALEYGFVDEVVDSFHAVATTVRRTVGLGTFAAGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLT9</accession>
    <name>A0A0Q8VLT9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Diacylglycerol O-acyltransferase</fullName>
            <ecNumber evidence="5 11">2.3.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">ASE19_04665</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>a 1,2-diacyl-sn-glycerol + an acyl-CoA = a triacyl-sn-glycerol + CoA</text>
            <dbReference type="Rhea" id="RHEA:10868"/>
            <dbReference type="ChEBI" id="CHEBI:17815"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="ChEBI" id="CHEBI:64615"/>
            <dbReference type="EC" id="2.3.1.20"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Glycerolipid metabolism; triacylglycerol biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the long-chain O-acyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.20" evidence="5 11"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894419.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55121">
        <property type="protein sequence ID" value="KRC55121"/>
        <property type="gene ID" value="ASE19_04665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="279287at2"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="UniPathway" id="UPA00282"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004144">
        <property type="term" value="F:diacylglycerol O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019432">
        <property type="term" value="P:triglyceride biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014292">
        <property type="entry name" value="Acyl_transf_WS/DGAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045034">
        <property type="entry name" value="O-acyltransferase_WSD1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009721">
        <property type="entry name" value="O-acyltransferase_WSD1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004255">
        <property type="entry name" value="O-acyltransferase_WSD1_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31650">
        <property type="entry name" value="PTHR31650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03007">
        <property type="entry name" value="WES_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06974">
        <property type="entry name" value="WS_DGAT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02946">
        <property type="entry name" value="acyl_WS_DGAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11 15" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8 11" id="KW-0319">Glycerol metabolism</keyword>
    <keyword evidence="6 11" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="9 11" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11 15" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="WES_acyltransf" evidence="13">
        <location>
            <begin position="7"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="domain" description="WS_DGAT_C" evidence="14">
        <location>
            <begin position="315"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="465"/>
            <end position="487"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU361241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF03007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF06974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC55121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="487" mass="53269" checksum="45A4A10422B581CF" modified="2016-01-20" version="1">MVDRVRPRDLTFLAEETPETPLHNATIEIFDPGEGEGAFDHAQLVALIRDRIAFVPRYRQRLQTVPGHLANPVWVDDENFDLGFHVRRSALPRPGTSAQLLELVSRIVSRPLDRTRPLWEIYFVEGLEGGRVALLSKTHQALVDGVHTVDLGQLLLDLQPEARELDPDDWVPRRSPNPARLLGGAVRENLTDPGVLLDTVRTGSRAVAREADRRSGKARSFLAAATGRRPKRRGVISGPLSQQRRVVTVETRLSDYRKVRQAHGGTVNDVILATVTGALRAWLMTRAESMGGMRQVRAVVPVSVIDEELEATSLGSQIAAHFVDLPIGETSPVVRLHQVSYSFQAHKDTGRSVAANRLAGIAGFAPTTFHAIGSRVAAAELRRGYQLSVTNVPGPQAPLYAAGARMLASYPVPPLTEGHPLAISVTSYDGGVFYGITADRDWIPDADLLGVCVREALEELLELSSATRERAPRGRRNPRPRPGGKNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM18</accession>
    <name>A0A0Q8VM18_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01925</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892635.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56617">
        <property type="protein sequence ID" value="KRC56617"/>
        <property type="gene ID" value="ASE19_01925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1270792at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013653">
        <property type="entry name" value="FR47"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08445">
        <property type="entry name" value="FR47"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="103"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="24806" checksum="5779BA70FCDB7787" modified="2016-01-20" version="1">MLADNTAASLDDPVGCSLRGAHAHLARRTGRAASYDRAVATFSTVPLDATAQDWDDLATLLGPGRFADLFSSPATPPADWDPVFRLEGFQMVGSADLLADPPPGLVELGAGDVPAMLALVEETRPGPFWERTHAMGRYVGVRDDDRLVAMAGERLRPPGWTEISAVCTADVARGRGLAAALVGEVARGIVARGDRPFLHVAATNTSAIRVYERLGFQVRREVVFRGYRTPVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMY1</accession>
    <name>A0A0Q8VMY1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glycoside hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_06375</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894467.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55058">
        <property type="protein sequence ID" value="KRC55058"/>
        <property type="gene ID" value="ASE19_06375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="949956at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019800">
        <property type="entry name" value="Glyco_hydro_3_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001764">
        <property type="entry name" value="Glyco_hydro_3_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036962">
        <property type="entry name" value="Glyco_hydro_3_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00933">
        <property type="entry name" value="Glyco_hydro_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00775">
        <property type="entry name" value="GLYCOSYL_HYDROL_F3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_3" evidence="3">
        <location>
            <begin position="29"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC55058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="472" mass="47898" checksum="F7A186CAB9A16A59" modified="2016-01-20" version="1">MTGALEELALRVQLGSFAGPTLPPDWAELLEEGLGGVCLFGSNLTGSLADAAALVAAVRSHRAEALVATDEEGGDVTRLHSREASPVPGPAVLGAVDDLALTSGVGALVGAELASVGIDLDLGPVADVNCNPDNPVIGTRSFGASPSLVAAHVAAWVTGLQAQGVAACVKHFPGHGDTAQDSHLTLPYVDAPLSTLRARELVPFAAAVAAGAASVMTSHLVVPALDPDLPATLSAPVLALLRDELGYDGVIVSDALDMAGASGARSIPSAAVAALAAGVDLVCTGPDKQSRLVRDIQAAIVAAVHSGELPLARLADAASRVDQLPRTVARGTTKSGSWHLDTREMVAAARRACLVEGPLPDLRGAVVVSIGTEANIAVGQGRWGLLPDVVVAEGDVLPDGPVVVQVRDAHRRPGVAAMLAAAPGPVVVVEWGWPGPRTGWAETSHARVCTRGNSGPSIAAVEEIVREAGWQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN46</accession>
    <name>A0A0Q8VN46_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22605</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58860">
        <property type="protein sequence ID" value="KRC58860"/>
        <property type="gene ID" value="ASE19_22605"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="64" mass="6842" checksum="EBBFEF4CDE6C6890" modified="2016-01-20" version="1" fragment="single">ADGRLAWTRFEALVEGKVAAANPELAEAKETAAATDRFARLSRINRHGIATLTIRDHAATILAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN56</accession>
    <name>A0A0Q8VN56_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Virulence factor Mce</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_23050</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892548.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58938">
        <property type="protein sequence ID" value="KRC58938"/>
        <property type="gene ID" value="ASE19_23050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="336531at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="45"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="130"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC58938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="439" mass="46989" checksum="7BFCC1EB9F70263A" modified="2016-01-20" version="1">MLVNIHHDSAREHNRLLVAGIGFLTAIALLVWLSVSIYNKAFDSTTTITVKADRAGLQLAKFGDVRINGVLVGRVAKIDQDGKQASITLDLEPDAAKKIPANVTVQILPTTLFGQKFVALVRPETGASGELRDGDVIPSDRVETNVELSQVLADLFPLLRAVRPADLNMTLSAVATALEGRGNELGETMDQLGQYIGAIDDSLPTLKEDLIALADVADAYDVAAPDLLDVLDNVTVTSKTITQKSEDLDVFFSDLTGLAKTSTRLLATNEQNLIRMGEVTEPVIGLLADYSPEFPCLIRGAANYEPILSKTFEGNWVRQKIELGSPQFRAFDERDLPTYGEVGHGPWCLGLPKFTVPAPPVPLDQGTDLDEKGGYLPFPIPGLENPNPIGINSGYAGSAPEQKVVNAILADKSGHDPASYGSLGTLLYGPVVREGRAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNB2</accession>
    <name>A0A0Q8VNB2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892554.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58932">
        <property type="protein sequence ID" value="KRC58932"/>
        <property type="gene ID" value="ASE19_23010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1582456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="295" mass="32110" checksum="7BD7CB107717AC97" modified="2016-01-20" version="1">MWFRAPVRDLAGKQVFVTGAASGIGRAVAEYAAERGAVLHLTDLQADLLDEVAAGIRERGGQVATAAAADVSDHAQVRALARQVTERSGPMDVVLNVAGIAVWGTVRSLEPEHWQRLVDVNLMGPIHVIEELLPPMIDAGRGGQLVNISSAAGIIAMPWHAAYSATKFGLRGVSEVLRYDLRKHRIGVSLVCPGGVDTGLVETIRIAGIDQQSRSFVRARGHFQKRAVSPEQAAEAIWKGALRNRYWVYTSADIRLVHLLQRWFPPGYAVAMRVFNYGANRVLPAVEQARRSDLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNL5</accession>
    <name>A0A0Q8VNL5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23145</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892531.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58955">
        <property type="protein sequence ID" value="KRC58955"/>
        <property type="gene ID" value="ASE19_23145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1470522at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Abhydrolase_3" evidence="1">
        <location>
            <begin position="170"/>
            <end position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="427" mass="46265" checksum="1384203C055E5071" modified="2016-01-20" version="1">MGFVRRQAITAALTANAIRPLPGFRAGIPAFFAGWITGELAPHLLGLTAADAAAHLSRSRRDWRGLALAGGSAAGLAYLIGQSRQAVKDAEDALVEGLGVDYVEQLDAKPTPADLATPWRSLVNPFAFGRAARRAGIEVHRDIRYTSYGRRGLLDVYTSEVTPASGAPVLLQVHGGGWTIGNKDQQGLPLMQHMAAKGWICVAINYRLAPRDPWPAQIVDVKAAIAWIKDNIADYGGDPDYVAITGGSAGGHLTALAATTPNAPEFQPGFESADTSVEAAVPYYGVYDWAGVSGLRSAALMRDKFIAPRVVKRRFRDEPEVFEQASPLLRVTPDDPDFFVIHGSRDTLVDPGQARAFVAALRQTSKRTVVYAELPGAQHAFDIFPSIRSQHLVRATDRFLTWHWNNWRRERLSAGAADPMDPAADAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNQ5</accession>
    <name>A0A0Q8VNQ5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Argininosuccinate lyase</fullName>
            <shortName evidence="5">ASAL</shortName>
            <ecNumber evidence="3 5">4.3.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Arginosuccinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">argH</name>
        <name evidence="8" type="ORF">ASE19_23335</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>2-(N(omega)-L-arginino)succinate = fumarate + L-arginine</text>
            <dbReference type="Rhea" id="RHEA:24020"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:32682"/>
            <dbReference type="ChEBI" id="CHEBI:57472"/>
            <dbReference type="EC" id="4.3.2.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 3/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.1" evidence="3 5"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892500.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58987">
        <property type="protein sequence ID" value="KRC58987"/>
        <property type="gene ID" value="ASE19_23335"/>
    </dbReference>
    <dbReference type="OrthoDB" id="751464at2"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00114"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004056">
        <property type="term" value="F:argininosuccinate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042450">
        <property type="term" value="P:arginine biosynthetic process via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01359">
        <property type="entry name" value="Argininosuccinate_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00006">
        <property type="entry name" value="Arg_succ_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029419">
        <property type="entry name" value="Arg_succ_lyase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009049">
        <property type="entry name" value="Argininosuccinate_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43814">
        <property type="entry name" value="PTHR43814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14698">
        <property type="entry name" value="ASL_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00838">
        <property type="entry name" value="argH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4 5" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lyase_1" evidence="6">
        <location>
            <begin position="11"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="domain" description="ASL_C2" evidence="7">
        <location>
            <begin position="376"/>
            <end position="444"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC58987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="475" mass="50667" checksum="8E08DAB37E18B211" modified="2016-01-20" version="1">MSTNTGKLWGGRFEGGPSPELEALSRSTHFDWRLGLYDIAGSHAHAKALAAAGLLTPAEEAELHRGLDVLAQGLTDGSLRPDPSDEDVHGALERLLIVEVGTDVGGKLRAGRSRNDQIATLFRCYLLDHSLTVGGLVLDLVDALAGQAETHLTSVDGGPAIMPGRTHLQHAQPVLLSHHLLAHAWALLRDVERLGDWRRRVAGDSPYGSGALAGQSLGLDPELVARELGFTGSTANSIDGTASRDFVAEFAFVAAQTGIDISRIAEEVILWATKEFGFATLHDSWSTGSSIMPQKKNPDISELARGKAGRLVGNLTGLLTTLKALPLAYNRDLQEDKEPVFDSVDTLAVLLPAFTGQIATLVFDTARMGELAPQGFSLATDIAEWLVRQGVPFRIAHEVAGACVRRCEELGIELDELSDEQFAAISEHLTPEVRTVLTVEGSVASRSGRGGTAPVRVAEQLADLRKRVTGARSGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ69</accession>
    <name>A0A0Q8VQ69_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06025</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894075.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54999">
        <property type="protein sequence ID" value="KRC54999"/>
        <property type="gene ID" value="ASE19_06025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041581">
        <property type="entry name" value="Glyoxalase_6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18029">
        <property type="entry name" value="Glyoxalase_6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyoxalase_6" evidence="1">
        <location>
            <begin position="15"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="Glyoxalase_6" evidence="1">
        <location>
            <begin position="134"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="243" mass="26496" checksum="94479B3E42B536A4" modified="2016-01-20" version="1">MKPSWVTAFLDSAPAHHQAGVGFWQAATGYAVSPPRGDHEEFATLLPPDGDAFVRVQRLHAGDDRIHLDLHVADPRAAADAAVVAGAVEVVDRHGYVVMASPAGLVFCFVDHPAAQVPRPTTHPDGSAARIRQVAIDVPRASYEREWGFWHALTGWEERASTITEDFRFLLPPAGQPLGLLLQRLGEDDGPARAHLDWGTTDRSAETERHLALGARVRAVHRHWTVLEDPVGRVYCLTDGNPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQA0</accession>
    <name>A0A0Q8VQA0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">YkuD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_23615</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893953.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57747">
        <property type="protein sequence ID" value="KRC57747"/>
        <property type="gene ID" value="ASE19_23615"/>
    </dbReference>
    <dbReference type="OrthoDB" id="975147at2"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd16913">
        <property type="entry name" value="YkuD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005490">
        <property type="entry name" value="LD_TPept_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038063">
        <property type="entry name" value="Transpep_catalytic_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03734">
        <property type="entry name" value="YkuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141523">
        <property type="entry name" value="SSF141523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="YkuD" evidence="4">
        <location>
            <begin position="152"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC57747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="270" mass="29067" checksum="8A514001E57296E1" modified="2016-01-20" version="1">MEQTSARSRTSLLVPVVISLLVIAALFLVFRDAEETEKKKEPASAPVVEKVDLKHLPASSTKTVIKAAPRDPRPTKVPKGTVVHPKRMLALYDEPDGTAFAKIGPKQFGETWLPVITRNSEWVQVMLPSKPNGSTGWLRTSDVQEAHSRFLVKVHLGARSLELYENNEQVGTWPVAIGAPATPTPTGRTFVLGQISDEKQPFSPVILPLGSHSDTLDSYGGGPGTVALHGWTDPAVFGQAVSHGCVRVPDDALALLRTIPIGTPVLVDKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQG2</accession>
    <name>A0A0Q8VQG2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase</fullName>
            <ecNumber evidence="2">2.5.1.145</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">lgt</name>
        <name evidence="4" type="ORF">ASE19_02145</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) + L-cysteinyl-[prolipoprotein] = H(+) + S-1,2-diacyl-sn-glyceryl-L-cysteinyl-[prolipoprotein] + sn-glycerol 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:56712"/>
            <dbReference type="Rhea" id="RHEA-COMP:14679"/>
            <dbReference type="Rhea" id="RHEA-COMP:14680"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:57685"/>
            <dbReference type="ChEBI" id="CHEBI:64716"/>
            <dbReference type="ChEBI" id="CHEBI:140658"/>
            <dbReference type="EC" id="2.5.1.145"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein modification; lipoprotein biosynthesis (diacylglyceryl transfer).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the Lgt family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.145" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892670.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56653">
        <property type="protein sequence ID" value="KRC56653"/>
        <property type="gene ID" value="ASE19_02145"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00664"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008961">
        <property type="term" value="F:phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042158">
        <property type="term" value="P:lipoprotein biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01147">
        <property type="entry name" value="Lgt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001640">
        <property type="entry name" value="Lgt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30589">
        <property type="entry name" value="PTHR30589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01790">
        <property type="entry name" value="LGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00544">
        <property type="entry name" value="lgt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01311">
        <property type="entry name" value="LGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="25"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="95"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="203"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="232"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="263"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="305"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol)</name>
            <dbReference type="ChEBI" id="CHEBI:64716"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="336" mass="37205" checksum="4E31409CBF490565" modified="2016-01-20" version="1">MLTQLITATIPSPANGVWHIGPFPLRGYALCIILGIVVAIWIGEKRWQARGGTLGEVQDVALWAVPFGLVGARLYHVATDWEKYFGADGTPVNALYVWHGGLGIWGGVGLGAVGAWIGARRKGIRLEPMLDALAPGVLVAQAIGRWGNWFNQELYGRPTDLPWGLEIDKDHFSSAYVASDQYKDALAANGGIVPDVAYFHPTFLYECLWNLAAFALIIWLDRRFRLGHGKVMAIYVMAYTLGRGWIEYIRIDDVQLNDVLGLRFNVWTSIVLFVIAAAYFAWSLRNRPGREESVYVDGRTAPEVEEVASTPEVEEVAQRPSRDPEADTAEDDTSTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQV2</accession>
    <name>A0A0Q8VQV2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00025</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896913.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59790">
        <property type="protein sequence ID" value="KRC59790"/>
        <property type="gene ID" value="ASE19_00025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2033757at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="70"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="89" mass="9883" checksum="E00BF7603EBB3598" modified="2016-01-20" version="1">MQPVACTTCEAEVLARKSSWDQSTLQWDATALERCIERRTTPARSERPNRNAFAGCAALRASIREAAVRGELDVQSDDPLRTNPEAIHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR80</accession>
    <name>A0A0Q8VR80_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Triacylglycerol lipase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03575</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AB hydrolase superfamily. Lipase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892913.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56896">
        <property type="protein sequence ID" value="KRC56896"/>
        <property type="gene ID" value="ASE19_03575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="721431at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004806">
        <property type="term" value="F:triglyceride lipase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005152">
        <property type="entry name" value="Lipase_secreted"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34853">
        <property type="entry name" value="PTHR34853"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03583">
        <property type="entry name" value="LIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029171">
        <property type="entry name" value="Esterase_LipA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360286" evidence="2">
        <location>
            <begin position="38"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="452" mass="47035" checksum="F6A12FB95BAA03E4" modified="2016-01-20" version="1">MGPTARTVRRRRLAAPVMAAVVALAATLVPGAPGAEATPTPARVVAAAATPDPFFTYTGAKPLADYAPGAVLRTRTAPYRVTGVPLPLTVVQVLFRTTNARGEAVAGVTSIIKPLFGATNRVISYQSFYDSLDPEHGPSRAVTGAASLGAMPAHVETVLMSTFLLQGYAIVMSDTQGPTADFAAGPEYGYVTLDSIRATLRATGTGILPTAKVGLVGYSGGAIATNWASVLAPSYAPDVNKRIVGAAEGGVLVRPSANLGYIDGSMIWAGVMPMAIVGVARAYDIDLTPYLNAYGRQVYDKLQKASITQVLGAYPGLTWKKITKPEYGDPASIPVFVRTVNKLNLGTRPSPSVPMFIGQGTGGEIEGTRASASVGRGDGVMVAGDVRSLARKYCAAGTKVVHKEYGLSHFTSVPFWLPDAISWLTARFQGKPAGDNCASIPPGNPLTPLKGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VS68</accession>
    <name>A0A0Q8VS68_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Anti-sigma factor antagonist</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_23920</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the anti-sigma-factor antagonist family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894007.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57373">
        <property type="protein sequence ID" value="KRC57373"/>
        <property type="gene ID" value="ASE19_23920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1864829at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043856">
        <property type="term" value="F:anti-sigma factor antagonist activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.24">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003658">
        <property type="entry name" value="Anti-sigma_ant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002645">
        <property type="entry name" value="STAS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036513">
        <property type="entry name" value="STAS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01740">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52091">
        <property type="entry name" value="SSF52091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00377">
        <property type="entry name" value="ant_ant_sig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50801">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="STAS" evidence="3">
        <location>
            <begin position="3"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="111" mass="11780" checksum="A316BC3A55C7A757" modified="2016-01-20" version="1">MNLTLSTREVGGRTVVAVGGEIDVYTAPKLRDTITELVAAGTYQLVIDMQAVEFLDSTGLGVLVGGLKKVRAHDGSLELICNADRLLKIFKITGLAKVFVIHDSPEAALAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSB2</accession>
    <name>A0A0Q8VSB2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Sigma70_r2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_03850</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892963.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56946">
        <property type="protein sequence ID" value="KRC56946"/>
        <property type="gene ID" value="ASE19_03850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1992113at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="4">
        <location>
            <begin position="31"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="94" mass="10267" checksum="B141227FEEEAE197" modified="2016-01-20" version="1">MPDRNGTADLAGLLRRCADGDEEALAALYDASCARVYRLSLLLTGHPEPAAHLCRITYLRVWREAGGYDARSGSAWAWLLARVHDVDRELAAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSD4</accession>
    <name>A0A0Q8VSD4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Luciferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894043.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57409">
        <property type="protein sequence ID" value="KRC57409"/>
        <property type="gene ID" value="ASE19_23735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="11"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="31246" checksum="5C1FAB9982B71A74" modified="2016-01-20" version="1">MTLPVMEPEVDPALLRDWAERIDAGPYGSLCFGERIAFDNPDILTLLGAVAAWTTRVRLSATVVVPQLHDPVHLAKALATADRLCGGRLSVGLGVGGREEDYRAVGADWGTRTMAQLAERAGVMRRVWAGEDVTGATRPVGPRPHTAGGPELLVGTLGRRTTVHAAAWADGLAGMSLGADVAETAGLFDLARSAWADAGRPAPRLTTSFWFALAEATDDPRRQVHAHLRHYMNWLPVELVDALAPTAGFAGTLDELGRLLDRFAEIGTDEVQLIPTGGDPRQVDLVADLLAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSI0</accession>
    <name>A0A0Q8VSI0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_24135</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000006">
        <property type="protein sequence ID" value="KRC57344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894056.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57344">
        <property type="protein sequence ID" value="KRC57344"/>
        <property type="gene ID" value="ASE19_24135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1128314at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002560">
        <property type="entry name" value="Transposase_DDE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032877">
        <property type="entry name" value="Transposase_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029261">
        <property type="entry name" value="Transposase_Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01610">
        <property type="entry name" value="DDE_Tnp_ISL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13542">
        <property type="entry name" value="HTH_Tnp_ISL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14690">
        <property type="entry name" value="zf-ISL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="zf-ISL3" evidence="3">
        <location>
            <begin position="40"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_Tnp_ISL3" evidence="2">
        <location>
            <begin position="90"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="DDE_Tnp_ISL3" evidence="1">
        <location>
            <begin position="158"/>
            <end position="414"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="431" mass="49042" checksum="F71A615FA0A4C1DF" modified="2016-01-20" version="1">MALVSLWRGLLGLEHTAIENVRRDGDVLVVDVRPMARQRDRCGRCRRRCPRYDTGRGRRRWRSLDQGTTLTFLEADAPRVRCRQHGVVVAHVPWAAHDAGHTHTFDAQVAWLATKTSKAATTELMRIAWRTVGAIIARVWDAAEAAAPTDGLDGLSRIGIDEISYRRNMKYLTVVVDHDTGLLVWAGEGRSRATLRAFFDELGPERCAQLTHVSADGASWIEEEVTLCCPNVVIGIDPFHVVKWANEALARVRIDAWQDARRLARFDPPTLTGWARRSQWLPGRDLARGLKGSRFALSKNPENLTDRQRAKLEWIATADPRLYRAYLLKEALRLVFQMPPEQARPELDRWLAWARRCRIPAFVELARKIRRYRDRILTAIEHNLSNGRVEGVNTRIRLLTRIAFGFHTSHALIALAMLSLGRHRPALPGRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VT97</accession>
    <name>A0A0Q8VT97_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Deoxyguanosinetriphosphate triphosphohydrolase-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23605</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the dGTPase family. Type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893951.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57745">
        <property type="protein sequence ID" value="KRC57745"/>
        <property type="gene ID" value="ASE19_23605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="370035at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008832">
        <property type="term" value="F:dGTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006203">
        <property type="term" value="P:dGTP catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01212">
        <property type="entry name" value="dGTPase_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006261">
        <property type="entry name" value="dNTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020779">
        <property type="entry name" value="dNTPase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023023">
        <property type="entry name" value="dNTPase_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026875">
        <property type="entry name" value="PHydrolase_assoc_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11373:SF32">
        <property type="entry name" value="PTHR11373:SF32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13286">
        <property type="entry name" value="HD_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01353">
        <property type="entry name" value="dGTP_triPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="2">
        <location>
            <begin position="66"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="413" mass="44868" checksum="1846C2E44967503C" modified="2016-01-20" version="1">MDQVEGRYDAHARERIVPEPPKRVEAPERLPFERDRARVVHAASFRRLAAKTQVVGPQSDDFVRNRLTHSLEVAQIARDLSRALGTHPDITETAALAHDLGHPPFGHNGERALQELATDCGGFEGNAQTLRLLTRLEAKSADAAGESVGLNLTRATLDACTKYPWSLADAPASAGGKFGVYADDRPAFDWLRRSAPSGRKCVEAQVMDLADDVAYSVHDVEDGVVAGKVDLTRLDTAAVWETVRDWYLPDATDAVLDDVLVRLRAVGSWPRSSYDGSRAGLAALKNVTSDLIGRFCGAVQQATFAASEGPFVRYAADLVVPADTWAEITVLKGVAAHYVMGDASRIAQQVRQRELLAELVEVLLRTEGRDLDGSFALDWARAGDDAARMRVVIDQVASLTDASAVAWHQRLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VY50</accession>
    <name>A0A0Q8VY50_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5 7">30S ribosomal protein S12</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsL</name>
        <name evidence="9" type="ORF">ASE19_00705</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 7">Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="1 5 7">With S4 and S5 plays an important role in translational accuracy.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 5 7">Part of the 30S ribosomal subunit. Contacts proteins S8 and S17. May interact with IF1 in the 30S initiation complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5 6">Belongs to the universal ribosomal protein uS12 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896756.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59585">
        <property type="protein sequence ID" value="KRC59585"/>
        <property type="gene ID" value="ASE19_00705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1707228at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03368">
        <property type="entry name" value="Ribosomal_S12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00403_B">
        <property type="entry name" value="Ribosomal_S12_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006032">
        <property type="entry name" value="Ribosomal_S12/S23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005679">
        <property type="entry name" value="Ribosomal_S12_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11652">
        <property type="entry name" value="PTHR11652"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00164">
        <property type="entry name" value="Ribosom_S12_S23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002133">
        <property type="entry name" value="Ribosomal_S12/S23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01034">
        <property type="entry name" value="RIBOSOMALS12"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00981">
        <property type="entry name" value="rpsL_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00055">
        <property type="entry name" value="RIBOSOMAL_S12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 6 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0820">tRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00025978"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="124" mass="13732" checksum="01066C3CAB0FF470" modified="2016-01-20" version="1">MPTINQLVRKGRQDKASKTKTPALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLSSGVEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKVIRGALDTQAVKNRKQARSRYGAKKEKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM96</accession>
    <name>A0A0Q8UM96_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Probable dual-specificity RNA methyltransferase RlmN</fullName>
            <ecNumber evidence="11">2.1.1.192</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">23S rRNA (adenine(2503)-C(2))-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">23S rRNA m2A2503 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Ribosomal RNA large subunit methyltransferase N</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">tRNA (adenine(37)-C(2))-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">tRNA m2A37 methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">rlmN</name>
        <name evidence="14" type="ORF">ASE19_19925</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>adenosine(2503) in 23S rRNA + 2 reduced [2Fe-2S]-[ferredoxin] + 2 S-adenosyl-L-methionine = 2-methyladenosine(2503) in 23S rRNA + 5'-deoxyadenosine + L-methionine + 2 oxidized [2Fe-2S]-[ferredoxin] + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42916"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:10152"/>
            <dbReference type="Rhea" id="RHEA-COMP:10282"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74497"/>
            <dbReference type="EC" id="2.1.1.192"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>adenosine(37) in tRNA + 2 reduced [2Fe-2S]-[ferredoxin] + 2 S-adenosyl-L-methionine = 2-methyladenosine(37) in tRNA + 5'-deoxyadenosine + L-methionine + 2 oxidized [2Fe-2S]-[ferredoxin] + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:43332"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:10162"/>
            <dbReference type="Rhea" id="RHEA-COMP:10485"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74497"/>
            <dbReference type="EC" id="2.1.1.192"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="11">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="11">Reaction proceeds by a ping-pong mechanism involving intermediate methylation of a conserved cysteine residue.</text>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the radical SAM superfamily. RlmN family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.192" evidence="11"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895916.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46140">
        <property type="protein sequence ID" value="KRC46140"/>
        <property type="gene ID" value="ASE19_19925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1111428at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070040">
        <property type="term" value="F:rRNA (adenine-C2-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002935">
        <property type="term" value="F:tRNA (adenine-C2-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070475">
        <property type="term" value="P:rRNA base methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01849">
        <property type="entry name" value="RNA_methyltr_RlmN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040072">
        <property type="entry name" value="Methyltransferase_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027492">
        <property type="entry name" value="RNA_MTrfase_RlmN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004383">
        <property type="entry name" value="rRNA_lsu_MTrfase_RlmN/Cfr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30544">
        <property type="entry name" value="PTHR30544"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006004">
        <property type="entry name" value="CHP00048"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00275">
        <property type="entry name" value="adenosine_C2_methyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00048">
        <property type="entry name" value="rRNA_mod_RlmN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 11" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="9 11" id="KW-0408">Iron</keyword>
    <keyword evidence="10 11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 11 14" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="7 11" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6 11 14" id="KW-0808">Transferase</keyword>
    <keyword evidence="11" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="Radical SAM core" evidence="13">
        <location>
            <begin position="122"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="11">
        <location>
            <begin position="191"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="11">
        <location>
            <begin position="248"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="11">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <feature type="active site" description="S-methylcysteine intermediate" evidence="11">
        <location>
            <position position="372"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="140"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="329"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC46140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="379" mass="40977" checksum="CCAAC5B719E7644A" modified="2016-01-20" version="1">MSEQPATAPKSLPLVFAEPRGRKKPPRHLADLTSDERKDLLVEMGLPGFRAKQLSTHYFGRLVHDPAEMTDLPAAQRAELVGALLPDLMDPIRQQSADKGKTVKTLWKLFDGSLVESVLMRYKDRATICISSQAGCGMACPFCATGQGGLTRNMSTAEIVHQVVVGARAMASGEVAGGPGRLSNVVFMGMGEPLANYKATLGAVRRLTEEAPSGLGLSARHVTVSTVGLVPRIRQLADEGIPVTLALSLHAPDDELRNDLVPINTRFSVAETVDAAHEYFSKTGRRVSIEYALMRDINDQAWRADLLADVLSAEGRGTGWVHINPIPLNDIPGSQFTRSREEDMDEFVRILNGRGIATTLRDTRGSEIDAACGQLAASE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMG7</accession>
    <name>A0A0Q8UMG7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Methylated-DNA--protein-cysteine methyltransferase</fullName>
            <ecNumber evidence="7">2.1.1.63</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">6-O-methylguanine-DNA methyltransferase</fullName>
            <shortName evidence="7">MGMT</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">O-6-methylguanine-DNA-alkyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_20290</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>a 4-O-methyl-thymidine in DNA + L-cysteinyl-[protein] = a thymidine in DNA + S-methyl-L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:53428"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:10132"/>
            <dbReference type="Rhea" id="RHEA-COMP:13555"/>
            <dbReference type="Rhea" id="RHEA-COMP:13556"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:82612"/>
            <dbReference type="ChEBI" id="CHEBI:137386"/>
            <dbReference type="ChEBI" id="CHEBI:137387"/>
            <dbReference type="EC" id="2.1.1.63"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 7">
            <text>a 6-O-methyl-2'-deoxyguanosine in DNA + L-cysteinyl-[protein] = a 2'-deoxyguanosine in DNA + S-methyl-L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:24000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:10132"/>
            <dbReference type="Rhea" id="RHEA-COMP:11367"/>
            <dbReference type="Rhea" id="RHEA-COMP:11368"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:82612"/>
            <dbReference type="ChEBI" id="CHEBI:85445"/>
            <dbReference type="ChEBI" id="CHEBI:85448"/>
            <dbReference type="EC" id="2.1.1.63"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="7">This enzyme catalyzes only one turnover and therefore is not strictly catalytic. According to one definition, an enzyme is a biocatalyst that acts repeatedly and over many reaction cycles.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the MGMT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.63" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895975.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46203">
        <property type="protein sequence ID" value="KRC46203"/>
        <property type="gene ID" value="ASE19_20290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1327994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003908">
        <property type="term" value="F:methylated-DNA-[protein]-cysteine S-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006307">
        <property type="term" value="P:DNA dealkylation involved in DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06445">
        <property type="entry name" value="ATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00772">
        <property type="entry name" value="OGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001497">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014048">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036217">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNAb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008332">
        <property type="entry name" value="MethylG_MeTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023546">
        <property type="entry name" value="MGMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036631">
        <property type="entry name" value="MGMT_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01035">
        <property type="entry name" value="DNA_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02870">
        <property type="entry name" value="Methyltransf_1N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46767">
        <property type="entry name" value="SSF46767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53155">
        <property type="entry name" value="SSF53155"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00589">
        <property type="entry name" value="ogt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00374">
        <property type="entry name" value="MGMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4 7 10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_1N" evidence="9">
        <location>
            <begin position="2"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="domain" description="DNA_binding_1" evidence="8">
        <location>
            <begin position="76"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; methyl group acceptor" evidence="7">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="161" mass="17438" checksum="B44007423A5711A2" modified="2016-01-20" version="1">MWTVIESPIGPLRLVEQDGAITAIEFSPFRDQDGRPRGPRADAAPVLVAAARQLDEYFARERTEFDLPLAPSGTSWQRDVWDQLLKIGYGETASYGEIALRLGKTNAASRAVGYANGSNPIPIVIPCHRVIGANGTLTGYAGGLDRKQLLLELEGDAEALF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMI8</accession>
    <name>A0A0Q8UMI8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oligoribonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20385</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895987.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46216">
        <property type="protein sequence ID" value="KRC46216"/>
        <property type="gene ID" value="ASE19_20385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1390327at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000175">
        <property type="term" value="F:3'-5'-exoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06135">
        <property type="entry name" value="Orn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013520">
        <property type="entry name" value="Exonuclease_RNaseT/DNA_pol3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022894">
        <property type="entry name" value="Oligoribonuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11046">
        <property type="entry name" value="PTHR11046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00929">
        <property type="entry name" value="RNase_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00479">
        <property type="entry name" value="EXOIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Exonuclease" evidence="1">
        <location>
            <begin position="4"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="23091" checksum="07C470F9F6248326" modified="2016-01-20" version="1">MNERLVWIDCEMTGLSLESDALVEIAALVTDFDLNVLGDGVDVIIKPPAEALDQMIEFVRNMHATSGLLDELANGVTLEEAEAQVMAYLREHCAPDSRPALAGNSVATDRGFVARDMSELDAFLHYRIVDVSSIKELSKRWFPRAYFNAPTKRGNHRALADIQESIEELRYYRDTVFVPLPGPDGDAAKAAAARHGGALTGLGVTRTDTDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMQ5</accession>
    <name>A0A0Q8UMQ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20815</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896057.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46286">
        <property type="protein sequence ID" value="KRC46286"/>
        <property type="gene ID" value="ASE19_20815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="865276at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="2"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="288" mass="32101" checksum="E780A924DB9AB6DA" modified="2016-01-20" version="1">MLQRLVPRLLETPGLERVLVVDNASTDGTGEWLAGLDEPLLQHETLATNTGGAGGFHHGLAWAVREGADLVWLMDDDGMPAPDCLPLLLERVERDGLEFCGPAVLAEQDPSRLCFPIRLPGGTRVVHEMAAVEAAAEDGLIDDVVIPFNGVLVTRDLVERIGLPREEFFIWGDDVEYLWRAERAGARIATVVDAHFLHPATDDLGTPMMFGRTTYNHTPSDLKHYCMARNNTLNLRAYRGWVHVLLFWLKTVWFYLFTKPQPARIPLSARAAAAGLRGDFTGHERFLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMR6</accession>
    <name>A0A0Q8UMR6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HGSNAT_cat domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20890</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896071.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46300">
        <property type="protein sequence ID" value="KRC46300"/>
        <property type="gene ID" value="ASE19_20890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1742337at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012429">
        <property type="entry name" value="HGSNAT_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07786">
        <property type="entry name" value="HGSNAT_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="129"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="168"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="203"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="282"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="309"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="345"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="domain" description="HGSNAT_cat" evidence="2">
        <location>
            <begin position="8"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="389" mass="40485" checksum="97035895D710B068" modified="2016-01-20" version="1">MTVLRPGRLVGIDVARTVALLGMIATHVLEGRTATGELTTVQWLAGGRASALFAVLAGVSMALMSGGADPQHGRELGRTTLGLAARAVLVALLGLALGGLETGLAVILAYYGVLFLLGLPFLGLRAPALAALAAVWVVVAPIASHLLRPELPVRELGSPDLDRLSAPGPLLADLLLTGYYPAVPWLAYLLAGMALGRMDLRGWRVPLGLAASGLGLAVVATAVSRLCTSSLEVRDALMPLRVTTHDELLQVLAGSQHGTTPTGGPWQWLLVVSPHSATPFDLAQTIGSALVVIGLSLALVHVLPRPGRVALAVLAGAGAIPLTLYTLHLVMRTPEVWPAEEPDTFGWHVAVVLGVGAVFALLGRRGPLEAVVGWPSRALRRPTPQAQPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMX4</accession>
    <name>A0A0Q8UMX4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">GTPase Obg</fullName>
            <ecNumber evidence="6">3.6.5.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">GTP-binding protein Obg</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">obg</name>
        <name evidence="11" type="ORF">ASE19_21145</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="6">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.-" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896115.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46344">
        <property type="protein sequence ID" value="KRC46344"/>
        <property type="gene ID" value="ASE19_21145"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042254">
        <property type="term" value="P:ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01898">
        <property type="entry name" value="Obg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.210.12">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01454">
        <property type="entry name" value="GTPase_Obg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031167">
        <property type="entry name" value="G_OBG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014100">
        <property type="entry name" value="GTP-bd_Obg/CgtA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036346">
        <property type="entry name" value="GTP-bd_prot_GTP1/OBG_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006074">
        <property type="entry name" value="GTP1-OBG_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006169">
        <property type="entry name" value="GTP1_OBG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036726">
        <property type="entry name" value="GTP1_OBG_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045086">
        <property type="entry name" value="OBG_GTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015349">
        <property type="entry name" value="OCT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11702">
        <property type="entry name" value="PTHR11702"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09269">
        <property type="entry name" value="DUF1967"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01018">
        <property type="entry name" value="GTP1_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102741">
        <property type="entry name" value="SSF102741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82051">
        <property type="entry name" value="SSF82051"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02729">
        <property type="entry name" value="Obg_CgtA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03595">
        <property type="entry name" value="Obg_CgtA_exten"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51710">
        <property type="entry name" value="G_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00905">
        <property type="entry name" value="GTP1_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51883">
        <property type="entry name" value="OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51881">
        <property type="entry name" value="OCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Obg" evidence="10">
        <location>
            <begin position="4"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="OBG-type G" evidence="8">
        <location>
            <begin position="162"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="domain" description="OCT" evidence="9">
        <location>
            <begin position="350"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="438"/>
            <end position="519"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="439"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="501"/>
            <end position="519"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="168"/>
            <end position="175"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="193"/>
            <end position="197"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="214"/>
            <end position="217"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="284"/>
            <end position="287"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="313"/>
            <end position="315"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC46344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="519" mass="55274" checksum="26561173C924A29A" modified="2016-01-20" version="1">MAVPTFVDRVTLSVSAGRGGNGVASVHREKFKPLGGPDGGNGGPGGSIILRVDPDVTTLLDYHHSPRRKAEHGGHGAGDRRNGAHGADLVLAVPAGTVVKQRNGEVIADLVIPGTEIVVAQGGRGGLGNAALASKSRKAPGFALLGEPGDELDVVLELKVVADIGLVGFPSAGKSSLIAAISRARPKIADYPFTTLVPNLGVVTAGETTFTVADVPGLIEGAAEGRGLGHDFLRHIERCAALVHVLDTATLEPGRNPADDLDVIEDELSRYGGLEDRPRLVALNKVDVPDGRGIAELVTDELRERGLRVFEISAVSGEGTRELIYAMAELVTEARRARAADIPARIVVRPKAVDDDGFTVKRTGAGWRVVGTKPERWVRQTDFSNDEAVGYLADRLNRLGVEAKLLQLGAEEGDAVLIGPTDNSVVFDFKPGIDAGAENLSRRGEDDRFHEQRPAASRRREIQENMDDRGETETRADVARRLDRPDEYGPLAYEIGSEEDPDVVAATDETDWAEDDPGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN43</accession>
    <name>A0A0Q8UN43_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gualylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21520</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896182.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46412">
        <property type="protein sequence ID" value="KRC46412"/>
        <property type="gene ID" value="ASE19_21520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1989751at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3090">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025336">
        <property type="entry name" value="DUF4242"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042557">
        <property type="entry name" value="SCO4226"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14026">
        <property type="entry name" value="DUF4242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="84" mass="9143" checksum="71A3AF22F49A6A91" modified="2016-01-20" version="1">MPLFMDVHETMPDGATAADVAGAHAEDLKVQAQYGVEYKSYWVDETNGKIFCLVEAPDAETAARVHREAHGLEADHIYPVVVGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN77</accession>
    <name>A0A0Q8UN77_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phenylacetate-coenzyme A ligase</fullName>
            <ecNumber evidence="1">6.2.1.30</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Phenylacetyl-CoA ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21685</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-phenylacetate + ATP + CoA = AMP + diphosphate + phenylacetyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:20956"/>
            <dbReference type="ChEBI" id="CHEBI:18401"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57390"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.2.1.30"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Aromatic compound metabolism; phenylacetate degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the phenylacetyl-CoA ligase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.30" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896210.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46440">
        <property type="protein sequence ID" value="KRC46440"/>
        <property type="gene ID" value="ASE19_21685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="839891at2"/>
    <dbReference type="UniPathway" id="UPA00930"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047475">
        <property type="term" value="F:phenylacetate-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010124">
        <property type="term" value="P:phenylacetate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05913">
        <property type="entry name" value="PaaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028154">
        <property type="entry name" value="AMP-dep_Lig_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011880">
        <property type="entry name" value="PA_CoA_ligase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14535">
        <property type="entry name" value="AMP-binding_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006444">
        <property type="entry name" value="PaaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02155">
        <property type="entry name" value="PA_CoA_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="2">
        <location>
            <begin position="87"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C_2" evidence="3">
        <location>
            <begin position="339"/>
            <end position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="435" mass="48214" checksum="A8554CC805659383" modified="2016-01-20" version="1">MQDLSPRKDELEPIETASVDEIRELQLDRLRWSVRHAYDNVEHYRASFDAAGVHPDDVKSLGDIAKLPFTTKADLRENYPFGMFAVPREQVARVHASSGTTGRPTVVGYTREDLETWATVVARSVRAAGGRSGHVLHNAYGYGLFTGGLGAHAGAEKLGCTVVPVSGGMTERQVQLIQDFQPDIIMVTPSYMLSIIDEMERQGIDPRSTSLKVGIFGAEPWTNDMRREMELRLDMHAVDIYGLSEVIGPGVASECVETKDGLTVWEDHFFPEVVDPITMEPVSDGEEGELVFTSLTKQAMPIIRYRTRDLTRLLPGTARTMRRIEKITGRTDDMMILRGVNVFPTQIEELILQTPALSPHFQCVLSRSGNLDDLTVLVEHRDGVAGPSAAIAGNELKRLVKNKVGVTVAVDVVAPETIERSVGKMRRIVDNRPKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN94</accession>
    <name>A0A0Q8UN94_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">EthD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21670</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896207.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46437">
        <property type="protein sequence ID" value="KRC46437"/>
        <property type="gene ID" value="ASE19_21670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="946586at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009799">
        <property type="entry name" value="EthD_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07110">
        <property type="entry name" value="EthD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02118">
        <property type="entry name" value="TIGR02118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EthD" evidence="1">
        <location>
            <begin position="12"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="99" mass="10459" checksum="9A9F7B5A3FBA5612" modified="2016-01-20" version="1">MYRLTVQYETPADPAAFDEQYFGQHVPLCAGIPGLQATTFSKPKVAGPGTAPYLVAELDFEDEAAFKAAMGSPEMGAVAKDADTLPAGRVMFIGELSDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNU2</accession>
    <name>A0A0Q8UNU2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cys_rich_CPCC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22270</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896423.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46654">
        <property type="protein sequence ID" value="KRC46654"/>
        <property type="gene ID" value="ASE19_22270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1977738at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025983">
        <property type="entry name" value="Cys_rich_CPCC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14206">
        <property type="entry name" value="Cys_rich_CPCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cys_rich_CPCC" evidence="1">
        <location>
            <begin position="7"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="129" mass="14674" checksum="40CE3184D9C9ADD8" modified="2016-01-20" version="1">MSGVTHPCPCCGYLQLDEQPGSHEICAICFWEDDAVQLRWPDWSGGANKPSLEVAQGHFEQFGAVEERVLSHVRPVSGDDVRDAGWRAIDRSVDFFEPLGEQLAAWPDDLTVLYWWRPTFWRPGWSGQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8USA7</accession>
    <name>A0A0Q8USA7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glycosyl transferase family 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_22160</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896289.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46521">
        <property type="protein sequence ID" value="KRC46521"/>
        <property type="gene ID" value="ASE19_22160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="948440at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044249">
        <property type="term" value="P:cellular biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901576">
        <property type="term" value="P:organic substance biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="4">
        <location>
            <begin position="21"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="3">
        <location>
            <begin position="173"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="350" mass="37339" checksum="17016F708D2019E7" modified="2016-01-20" version="1">MKIVLATETFYPAVDSTTTTLKATVDRLVDLGHSVRIVAPGPGLASYRGCDVVRVRPLEPTGAQVREAIESFGAEVVQVHSPRNVGRKALKHAGRLGVPTVVVEQSPVLDLAADYWRAKIADRADTVLVTSPWMVARAAELGVTATLWEPGVDSRAFNPTLRDPWLHASWSKARSRDGEQVVVGYVGGLHKAAGVRRLADVAAVPGTRLVVIGHGPDREWLARRVPGARFTGPLSIGDLTVAMPTLDVLVHPGEHETDCHALREAAASGVPVVAPRSGGARDVVAHLETGVLYDAGDTRDLVRAVAAVAGDPHRRLMGAAARERAVRRTWADAVDELVAQHLPERTPASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UTS9</accession>
    <name>A0A0Q8UTS9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20760</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896046.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46275">
        <property type="protein sequence ID" value="KRC46275"/>
        <property type="gene ID" value="ASE19_20760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1847197at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002847">
        <property type="entry name" value="F420-0_gamma-glut_ligase-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01996">
        <property type="entry name" value="F420_ligase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F420_ligase" evidence="1">
        <location>
            <begin position="13"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="domain" description="F420_ligase" evidence="1">
        <location>
            <begin position="78"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01996"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="317" mass="32030" checksum="4204A18F378EB728" modified="2016-01-20" version="1">MGGTLSVLAPDGVPEIGAGDDLADLLVAALAPEQVLDGDVLVVTSKVVSKAEGRVVSGEREAWITRETLRLVAVRGATRIVRNRLGLTMAAAGIDASNVAAGSVVLLPEDPDASARALRAAVRERTGANVGVIVTDTAGRAWREGQTDIAIGAAGLVVLESFAGRVDAHGNELAVTAPAVADEIAAAVELAQGKLGARPCALVRGRADLVLPVGEDGPGAAALIRPEGTDLFGYGAREAVLRAIGGAAEDRAPFGAPVGHGELLDALARAGIAAQAGPDGTVLCPADRRAAVDILAFAHGWSVAEFDTGLRLQPLSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUF2</accession>
    <name>A0A0Q8UUF2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Aldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_18050</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893223.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48822">
        <property type="protein sequence ID" value="KRC48822"/>
        <property type="gene ID" value="ASE19_18050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="744602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="4">
        <location>
            <begin position="27"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="494" mass="52218" checksum="6841C0092B20F955" modified="2016-01-20" version="1">MRTHQDWVREAGKATLHTLPFVGGRFIEAGEETFENRNPANGALLADVADAGAAGVDRAVRAAREAFDAGSWSRAGASYRRGRMLRFADLLAEHAAELAVLDSLDMGKRVVDAHDLDLPFSVDLFRYYAEAIDKINDEVAPTPPGTTALVRRVPLGVVGAVVPWNYPVDMLAWKVAPAMAAGNSVVLKPAEQSPSSALRIAELAAEAGIPDGVLNVVPGLGETTGRALGLHPDVDVLAFTGSTEVGRHFLQYAGQSNLKQVWLECGGKSPHLVFADAEDLAATARATAFGIWFNQGAVCSAHSRVLVQREVHEEFVALVAAEAASYTPGDPLDPAAGMGAVVSPEQTDQVMRFIDGARASGARLVTGGERITRDGSDCYVQPTVFDGVDPASELAREEVFGPVLAVTPFATEDEALALANDTAYGLAASVATSNLGRAHRLADRIHAGTVTVNGVDAFSAWTPFGGFKGSGFGRDLSLHALDKYVGLKTVWINH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUI5</accession>
    <name>A0A0Q8UUI5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amidohydro_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18170</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893247.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48846">
        <property type="protein sequence ID" value="KRC48846"/>
        <property type="gene ID" value="ASE19_18170"/>
    </dbReference>
    <dbReference type="OrthoDB" id="751534at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01300">
        <property type="entry name" value="YtcJ_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013108">
        <property type="entry name" value="Amidohydro_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033932">
        <property type="entry name" value="YtcJ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07969">
        <property type="entry name" value="Amidohydro_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro_3" evidence="1">
        <location>
            <begin position="53"/>
            <end position="543"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="554" mass="60013" checksum="BF2EC624576D635A" modified="2016-01-20" version="1">MSAEAADLLLTGGIVHTLDPDLGEADSLAVRDERIVWVGRRADAPAWALAATEVRDLDGRAVLPGFVDAHNHVRLGSDDACVQLAGADTLDEVGARLRAFAAAHPGTGWVEAEGYTYAGLTAGAHPTRQMLDELVPDRPVAVLSYDVHTLWLNTPGLAALGVDEPDQPFGTAELDADGRPSGFVVDFAVKGLSRAGLAALLERGLPWASPERQYQRLLGSLDQAARCGITTVVEPQNSPDDIALFERARREGRLGPRVVLAMFHPMGTTAQERREFARLATSYDDDRLRVGPLKLYIDDVVEPHTAALHEPYAGESEHRGETYYDPSEFADLVAELDAEGFQLFVHATGDRGITTVLDAVENARAVNGPRDARHQVVHVECLRRSDLPRFAELGVVACMQPRHASPEIAGPGHAWAEAVGEQRWHQAWPLRSLRDHGAVLAFSSDWNVAEMEPMVGIQCAVTRAPLSGGEPWQPEEAVTLHDALLGYTTGSARANFCEDDRGSLTVGKYADLVVLDTDPYAVDATKLADVCVLETWVGGRLVHSTTHHHLEESP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUR5</accession>
    <name>A0A0Q8UUR5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18820</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893358.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48956">
        <property type="protein sequence ID" value="KRC48956"/>
        <property type="gene ID" value="ASE19_18820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1006184at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005240">
        <property type="entry name" value="DUF389"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20992">
        <property type="entry name" value="PTHR20992"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04087">
        <property type="entry name" value="DUF389"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="141"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="174"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="221"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="245"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="280"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="33695" checksum="A54C2714DA3B7E69" modified="2016-01-20" version="1">MQHLRITSPRDLTPAVVDLLRQDPAVTALTCVPGAALVPEGDLVEADLPREAVNEVVDALRAIGVQHEGALHVVPVATWVSRPAHEAEKQTPGSSTDAVVWAEVTQRAFDESELNWTYLTFMTLATLIASIAIVLDSQVLVIGAMVLGPEFVPVAALGLALVRRRPALLRHAGRALVVGFAVAIATATLAALAARGLGWVTVDQVTAPRPATAFIYSPDKWSFIVAVIAAAAGALSLTSGKVGGLSGVFISVTTIPAAGNVALGLAFGVPDEVRGSALQLLLNVAGMAAAGWLTLAFQQAVWSRASARRARLVARLRRQPGAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV25</accession>
    <name>A0A0Q8UV25_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CsbD-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_19285</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0337 (CsbD) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893434.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49032">
        <property type="protein sequence ID" value="KRC49032"/>
        <property type="gene ID" value="ASE19_19285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2089955at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008462">
        <property type="entry name" value="CsbD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036629">
        <property type="entry name" value="YjbJ_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05532">
        <property type="entry name" value="CsbD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69047">
        <property type="entry name" value="SSF69047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CsbD" evidence="3">
        <location>
            <begin position="5"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009129"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC49032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="56" mass="5949" checksum="AFD31DBBE323A54C" modified="2016-01-20" version="1">MGLDDKISNAAEEKTGQAKEALGKATDNEDLEAEGKGDQLKGNLKQAAEKVKDAFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWE4</accession>
    <name>A0A0Q8UWE4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Chromosome partition protein Smc</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">smc</name>
        <name evidence="8" type="ORF">ASE19_20145</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Required for chromosome condensation and partitioning.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="5">Contains large globular domains required for ATP hydrolysis at each terminus and a third globular domain forming a flexible hinge near the middle of the molecule. These domains are separated by coiled-coil structures.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the SMC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895952.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46177">
        <property type="protein sequence ID" value="KRC46177"/>
        <property type="gene ID" value="ASE19_20145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1149850at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030261">
        <property type="term" value="P:chromosome condensation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007062">
        <property type="term" value="P:sister chromatid cohesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01894">
        <property type="entry name" value="Smc_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003395">
        <property type="entry name" value="RecF/RecN/SMC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024704">
        <property type="entry name" value="SMC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010935">
        <property type="entry name" value="SMC_hinge"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036277">
        <property type="entry name" value="SMC_hinge_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011890">
        <property type="entry name" value="SMC_prok"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06470">
        <property type="entry name" value="SMC_hinge"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02463">
        <property type="entry name" value="SMC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005719">
        <property type="entry name" value="SMC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00968">
        <property type="entry name" value="SMC_hinge"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75553">
        <property type="entry name" value="SSF75553"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02168">
        <property type="entry name" value="SMC_prok_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359491" description="Chromosome partition protein Smc" evidence="6">
        <location>
            <begin position="18"/>
            <end position="1198"/>
        </location>
    </feature>
    <feature type="domain" description="SMC hinge" evidence="7">
        <location>
            <begin position="513"/>
            <end position="626"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="174"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="331"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="461"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="657"/>
            <end position="768"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="1008"/>
            <end position="1035"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="32"/>
            <end position="39"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1198" mass="128981" checksum="96024112F01B58F1" modified="2016-01-20" version="1">MYLKSLTLKGFKSFASATTLQLEPGITCIVGPNGSGKSNVVDALAWVMGEASAKSLRGGKMDDVIFAGTSGRPPLGRAEVVLTIDNSDGALPIDYSEVTISRTMFRTGGSEYAINGTTCRLLDVQELLSDSGIGREMHVIVGQGQLDQILHATPEDRRGFIEEAAGVLKHRKRKEKALRKLDSTEGNLNRLNDLLSEIRRQLKPLGRQAEVARRAATVQADVRDARARLLADDLVTARTALERELADESVLLARRQEVEAGVAQAREQEARLEAALREDLPALSAAQETLSSLNALRERFRGTQSLAAERVRNASGVAETEVEQGRDPEELEAEAARLAAHEAEIAAQVAEQQTALETAVQDRRRAEEAAAAEERRVAGLLRAAADRREGLARLHGQVNTLRSRATSSEEEIGRLEAARTDAVARAERSQRDFTALETRVAGLDAGEEGLDAEHEGAVSALDDITERLAKVREEAQQADRDKAGLSARKEALEIGLSRKDGAGALLAASDTVSGLLGSVAALVTVRSGYEGAVAAALGAAADAVAVTDADSAVAAIDHLKADDLGRAGLLLGGGETEAVASWPALPPGTSYAADVVDCPAQVRPALNRLLRKVAVVDDLPGARTLVADLPDLVAVTRDGDLLGAHFASGGSHATQSLIEIQAAVDEATEQLAEAVAASERLAFDLARLESERADAQQRVDVALAKLHESDATLAAVAEELGQHGSLARAARAEADRLTASIAQAETSREQALVGLAELEQRLAAAEEDSGEEEPDTTEQERLVEATRAARQSEMEARLALRTSEERARALHGRVDQMRKAAEAERVARARAAERRARLIAEGRAGQAVATAAAHVLARLEVSVARAAERRQAVEDSRRGREQELMTVRQSLRDLGKELEELVSSVHRDEMARAQQRMRIEQIEVKALEELGLEPDGLVADYGPDQPVPVLDVPADDAAADAPAASEDGAEPEQRTVPYVREEQVKRLRSAEKALSMLGKVNPLALEEFSAMEERHQFLSEQLEDLRQTRKDLLDIVKDVDVRVEQVFTEAYADVTKAFDATFARLFPGGEGRLVLTDPSNMLTTGIEVEARPPGKKVKRLSLLSGGERSLVAVAFLVALFKARPSPFYILDEVEAALDDTNLGRLLEIYEELRENSQLLVITHQKRTMEVGDALYGVTMRGDGVSAVISQRLRDAEPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWK4</accession>
    <name>A0A0Q8UWK4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">WYL domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20440</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46225">
        <property type="protein sequence ID" value="KRC46225"/>
        <property type="gene ID" value="ASE19_20440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1116856at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026881">
        <property type="entry name" value="WYL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13280">
        <property type="entry name" value="WYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="WYL" evidence="1">
        <location>
            <begin position="127"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="302" mass="32677" checksum="735F51D6DAD3DE48" modified="2016-01-20" version="1">MERLVRIAAMLQAHPQSGVSSDKLISVAGFEGGKDAGSQLKRELTHLENQGWQIENIAGPGESATYRMTTVDNRLRVRLTPGQQAELRRAVLMARRSDLVARLGLPAEAAGDELPPATAVQDATPEALSLVVDAVRDHQLLTFTYKGTRRTVHPESVRNQNGTWYLRAVEDADLADLPGSVVKTFVVSRMTAADAGPAGSAQRIPPVRHVGLHPMSWEIDPAVEVTLRAPAHYEPDVRRWLGDPEGVEAAGDDVLLRYRVTHRAALRTRLNELGDRVRIVGPADVRAEVIAALDAARGGGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWZ6</accession>
    <name>A0A0Q8UWZ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21525</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896183.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46413">
        <property type="protein sequence ID" value="KRC46413"/>
        <property type="gene ID" value="ASE19_21525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2022855at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="65" mass="7015" checksum="139F85FAF68AC599" modified="2016-01-20" version="1">MSPARDALDRWIASGGQWDVVAEQGDRVTVALCTCGGGEEMDRVVLDRAELPILDQRPAPPGRPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXV9</accession>
    <name>A0A0Q8UXV9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 12">GTP 3',8-cyclase</fullName>
            <ecNumber evidence="3 12">4.1.99.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Molybdenum cofactor biosynthesis protein A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">moaA</name>
        <name evidence="14" type="ORF">ASE19_16050</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>AH2 + GTP + S-adenosyl-L-methionine = (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate + 5'-deoxyadenosine + A + H(+) + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:49576"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:131766"/>
            <dbReference type="EC" id="4.1.99.22"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="12">Binds 2 [4Fe-4S] clusters. Binds 1 [4Fe-4S] cluster coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine and 1 [4Fe-4S] cluster coordinated with 3 cysteines and the GTP-derived substrate.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 12">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Monomer and homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the radical SAM superfamily. MoaA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.99.22" evidence="3 12"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893591.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50123">
        <property type="protein sequence ID" value="KRC50123"/>
        <property type="gene ID" value="ASE19_16050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1199289at2"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019008">
        <property type="term" value="C:molybdopterin synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061798">
        <property type="term" value="F:GTP 3',8'-cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904047">
        <property type="term" value="F:S-adenosyl-L-methionine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01225_B">
        <property type="entry name" value="MoaA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013483">
        <property type="entry name" value="MoaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000385">
        <property type="entry name" value="MoaA_NifB_PqqE_Fe-S-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010505">
        <property type="entry name" value="Mob_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06463">
        <property type="entry name" value="Mob_synth_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02666">
        <property type="entry name" value="moaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01305">
        <property type="entry name" value="MOAA_NIFB_PQQE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9 12" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="7 12" id="KW-0408">Iron</keyword>
    <keyword evidence="8 12" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="11 12" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 12" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="6 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 12" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="13">
        <location>
            <begin position="7"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="23"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="257"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-substrate</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="260"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-substrate</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="262"/>
            <end position="264"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="274"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-substrate</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC50123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="330" mass="35794" checksum="8C7C823F8C78FF4B" modified="2016-01-20" version="1">MQPLMDQYGRVATDLRVSLTDRCNLRCTYCMPAEGLDWLPTDQQLSDDEVVRLIGVAVGRLGVQEIRFTGGEPLVRRGLVDIVRRVRDLDADVEMSITTNALGLAKTAASLAEAGLNRVNVSLDTVRRETFHEVTRRDRLDDVVEGLAAAEAAGLGPVKVNAVLLRGVNDDHAPELLAWCIERGYQLRFIEQMPLDAQHGWSRDEMVTADEILASLSTAFALTPASEPRGSAPAELFTVDGGPATVGVIASVTRPFCGDCDRVRLTADGQVRNCLFARTESDLRVALRAGASDDELAERWLTAMRGKAAGHGIDDPTFLQPDRPMSAIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY24</accession>
    <name>A0A0Q8UY24_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15560</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893505.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50036">
        <property type="protein sequence ID" value="KRC50036"/>
        <property type="gene ID" value="ASE19_15560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1871164at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="109" mass="12265" checksum="C318557BF05E25F6" modified="2016-01-20" version="1">MVASRAARERKAAAQAGELARVRIEVGPQDQFVYKITCVECTGKGDRPWSVYRPGEDNGFMAGMDRWIFHLREKHPTSDAPCLEFLPAAEQRLHERRRQQAGGTGHADD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYA5</accession>
    <name>A0A0Q8UYA5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Chromate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_16750</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the chromate ion transporter (CHR) (TC 2.A.51) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893717.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50248">
        <property type="protein sequence ID" value="KRC50248"/>
        <property type="gene ID" value="ASE19_16750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1884249at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015109">
        <property type="term" value="F:chromate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014047">
        <property type="entry name" value="Chr_Tranpt_l_chain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003370">
        <property type="entry name" value="Chromate_transpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02417">
        <property type="entry name" value="Chromate_transp"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004810">
        <property type="entry name" value="ChrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00937">
        <property type="entry name" value="2A51"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="88"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="117"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="149"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="224"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="255"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="326"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="364"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="409"/>
            <end position="429"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC50248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="453" mass="47538" checksum="7849AD5740439084" modified="2016-01-20" version="1">MTSTRSRRDDVIPLREATRAWFAISLQTFGGPAGQIAVMQHKLVDEKRWIGQQRFLHALNYCMLLPGPEAQQLAIYVGWLLNGTAGGLVAGILFVLPGVLALLALSALYVGAGSTTFVTGLFAGLAPAVIAIVVQAVHRVGKRALHHPALVVMAVASFVALTVFKVPFPAVVAAAGVIGWLVGRRVPAFTEANAHGPAADGPPPLISDDALHHDPPSTVRGLKLLVLGLVLWFTPVAVAAATFGRDSVFVDQGLFFSGAAVVTFGGAYAVLSYVAHQAVNVFGWLKAGEMVRGLALAETTPGPLIMVVQFVAFVGAYRDPGSLDPWVAAVLASLLVTWVTFVPCFLFIFLGAPYVERLRNNRQLTAALTGITAAVVGVIANLAVFFALHNLFDRSRTVSAGPAELDVPVLSSADPVAFAITAVALALILGRTWSTMRTLGVCALLGLASTLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYD2</accession>
    <name>A0A0Q8UYD2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_16190</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0749 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893616.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50148">
        <property type="protein sequence ID" value="KRC50148"/>
        <property type="gene ID" value="ASE19_16190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1883872at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010273">
        <property type="entry name" value="DUF881"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37313">
        <property type="entry name" value="PTHR37313"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05949">
        <property type="entry name" value="DUF881"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="41"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="83"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="281" mass="29861" checksum="0BD3A51264E8127B" modified="2016-01-20" version="1">MSTEPVDRARTPLLALITQEALDRDYQTAASRRGPDERESAGLRVAVVGVVAVFAMLVTVAAVQTNANADVDDASRATLIGRIEARRSAVADLQDQIAALRKDNTAAEDRLRSLGSRYGDVQARRASLGALTGFEVVRGDGIRVTLDNEQYADEDHQVRDSDIALLANGLWEAGAEAIAVNGQRLTAASGIRTSGDAIEVNLIGIAPPYTVLAVGDRGALSSRFVDTQSGLQFISRVNTFGFSYDVENEDDLRLPAAPASLRVLRSATYQPNPKVDGGGAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1M2</accession>
    <name>A0A0Q8V1M2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15015</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896464.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51397">
        <property type="protein sequence ID" value="KRC51397"/>
        <property type="gene ID" value="ASE19_15015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="244" mass="24974" checksum="A211B3824B300A51" modified="2016-01-20" version="1">MNDFSTLPGGALVVGGSGGLGRAIAELLEERGARVAVTHRTRPAEVGVASYGLDLADPADVPRVVGHAAAELDGLHTVVYAAGPHVPMVHLSRVPPAEMATQLAVDAAGFFAVAHASLPFLRDARGSLTAVTTAATARFPVRDGLSSAPKAAVEAMVRGLAAEEGRFGVRVNAVGPGMLTDGMAERLISSGELDERALEVTRGNIPLRTFGTAVDIAEAVCFLASPRAGFITGQKLDVDGGYGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3U0</accession>
    <name>A0A0Q8V3U0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Ribonuclease J</fullName>
            <shortName evidence="9">RNase J</shortName>
            <ecNumber evidence="9">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">rnj</name>
        <name evidence="12" type="ORF">ASE19_18630</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer, may be a subunit of the RNA degradosome.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893326.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48925">
        <property type="protein sequence ID" value="KRC48925"/>
        <property type="gene ID" value="ASE19_18630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="580619at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004534">
        <property type="term" value="F:5'-3' exoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10710">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01491">
        <property type="entry name" value="RNase_J_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011108">
        <property type="entry name" value="RMMBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004613">
        <property type="entry name" value="RNase_J"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042173">
        <property type="entry name" value="RNase_J_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030854">
        <property type="entry name" value="RNase_J_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041636">
        <property type="entry name" value="RNase_J_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07521">
        <property type="entry name" value="RMMBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17770">
        <property type="entry name" value="RNase_J_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004803">
        <property type="entry name" value="RnjA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00649">
        <property type="entry name" value="MG423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="7 9" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="5 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 9" id="KW-0540">Nuclease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="9" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Lactamase_B" evidence="11">
        <location>
            <begin position="31"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9 10">
        <location>
            <begin position="375"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR004803-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC48925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="561" mass="61183" checksum="E5E4E00929BA1272" modified="2016-01-20" version="1">MSHPHPELSAPPELPKGGLRVIPLGGLGEVGRNMTVFEYDGRLLIVDCGVLFPDEHHPGVDLILPDFAAIRDRLDAVEALVLTHGHEDHIGATPYLLRERQDIPLVGSQLTLALVNSKLREHRLRQTPFHTVKEGDRISFGPFDLEFVAVNHSIPDALAVAIRTGAGLVLHTGDFKMDQLPLDGRITDLRAFARLGEEGVDLFLTDSTNADVPGFTTAERRITPVLEQAFSESSQRIIVACFASHVHRVQQILDTAVKHNRKVAYVGRSMVRNMAVARDLGYLHVPPGVMVEAKELADLAPERQVLISTGSQGEPMSALARIAHRSHNFVHLEEGDTVILASSLIPGNENSVYRVINGLSRLGARVVHKGNALVHVSGHASAGELLYCYNIVKPRNVLPVHGEIRHMLANGDLAKQTGVENVVYAEDGVVVDLVDGVAKVVGKVECGYVFVDGQSVGDVTESELKDRRILGEEGFISVILVVDSVSGKLSAGPEIHARGHAWADSDFEPIKLPIVDAVNRALEEGSTDTYQLQQVVRRTIGRWVSNTHKRRPMIIPVVVEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V415</accession>
    <name>A0A0Q8V415_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18275</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893266.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48865">
        <property type="protein sequence ID" value="KRC48865"/>
        <property type="gene ID" value="ASE19_18275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1646574at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016772">
        <property type="term" value="F:transferase activity, transferring phosphorus-containing groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="180"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="203"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="2">
        <location>
            <begin position="255"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="467" mass="49197" checksum="93319E4FE1D847B9" modified="2016-01-20" version="1">MLHPYAILLLEATAAHPAALAGHVCTVLADLVLLGSALVLSVDARATHCGTRANLATVATLMMIQDLPLVVVAVADPGRSGYAYRISDGHLLTVLVVAALVLIGCRPGRPPQRNPLLTGLLLGTVVLAVRSLLLVIDPTPFLRPGSLLDGLLLALIALLTAVVCIATMRSDLPRAASARITLGVGAYFLARLWASAIEASSPPVVSVVGVVVASALLATTSIALLLESLRRQEAHGHHLQQRAAVAEATVRHDREVVHEVRSATAGIVAGAHLLASGRVPPGPRRVALQQMVDAEAARLDRRMTQHVAEEITEVDVDELIEPLVLAQGAQGHQVDWSRSGHRVIGRHDAVSEIVNVLLANAARHAGGKGTAIDVTATDADIEIRVSDRGPGVAPDVEDRLFQWEARSESSPGEGIGLQRAQRLAHELGGQLRHDRRAGRRGAAFIVTLRIADQAPAPPLHEPFGLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4G0</accession>
    <name>A0A0Q8V4G0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16260</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893884.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50355">
        <property type="protein sequence ID" value="KRC50355"/>
        <property type="gene ID" value="ASE19_16260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377545at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="298" mass="31869" checksum="88B586FF41CFE6EF" modified="2016-01-20" version="1">MRPWTQVPPQQGRRFVITGSNGGLGLETARILGSRGAEVVMACRSVEKAEAAARTVPGHDRGRVVVRQLDVSDLGSVRRFVSGLAAEGRPVDVLINNAGVLGVPYAVSAEGVEMHFATNYLGHFALTLGLVPLLTDRVVVISSREHRSGAIDLDDLGWRTRGYRPFQAYGDSKLADLLFMRELDRRLRASGSPLRAVAAHPGASATGITSGSGHPVVTWIGHHGSRLVSMPAWRGALCTVYAATTDVDGGTYIGPHGRTELWGWPAPARMSPKADDEVLARALWERSVELTGVDLPAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5W2</accession>
    <name>A0A0Q8V5W2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10525</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894770.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52837">
        <property type="protein sequence ID" value="KRC52837"/>
        <property type="gene ID" value="ASE19_10525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1488324at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046096">
        <property type="entry name" value="DUF6114"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19609">
        <property type="entry name" value="DUF6114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="122"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="17483" checksum="DC6B109FCF53346F" modified="2016-01-20" version="1">MTDISADLSAPTDVPVVSIDTPTGRLSRIRRRFTTFRRTRPFWGSLILLGGAWFVARPLLGGTFEFYTTVGVRSITPLLLAGGMAAAALTALVLPAQRHFPAIVAMMLAVASLPLANLGGWLIGMVLGITGAGLVFAWTPYTDKQLARFAERDAARAARRAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V672</accession>
    <name>A0A0Q8V672_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Delta-aminolevulinic acid dehydratase</fullName>
            <ecNumber evidence="4 11">4.2.1.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_10195</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>2 5-aminolevulinate = H(+) + 2 H2O + porphobilinogen</text>
            <dbReference type="Rhea" id="RHEA:24064"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58126"/>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <dbReference type="EC" id="4.2.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homooctamer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 12">Belongs to the ALAD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.24" evidence="4 11"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894712.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52779">
        <property type="protein sequence ID" value="KRC52779"/>
        <property type="gene ID" value="ASE19_10195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="677575at2"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00318"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004655">
        <property type="term" value="F:porphobilinogen synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001731">
        <property type="entry name" value="ALAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030656">
        <property type="entry name" value="ALAD_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11458">
        <property type="entry name" value="PTHR11458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00490">
        <property type="entry name" value="ALAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001415">
        <property type="entry name" value="Porphbilin_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00144">
        <property type="entry name" value="DALDHYDRTASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01004">
        <property type="entry name" value="ALAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00169">
        <property type="entry name" value="D_ALA_DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="7 11" id="KW-0456">Lyase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 11" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="200"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="252"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001415-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001415-5"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU004161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC52779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="330" mass="35125" checksum="8D55E14E96660FDB" modified="2016-01-20" version="1">MTDFERPVVRPRRLRTTAAMRDLVAETSLRPAQLVLPLFVREGATEPLPIGSMPGVVQHTRDTLRKAVAEAAEAGLRGVMLFGIPEHKDAAGSGATDPDGILTVAIRDVVSEVGDALVVMSDLCLDEFTDHGHCGVLAADGTVDNDATLARYADMAVLHAEAGVGMVGPSGMMDGQVAVVRDALDEAGHTTTGILAYSSKYASAFYGPFREAVDSSLQGDRRTYQQDGRNAREGVREALLDIDEGADIVMVKPALAYLDVLRRVADAAGELGVPVAAYNISGEYSMLEAAAAHGWIDREPAILETLTSIHRAGADVILTYWATEAARLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V695</accession>
    <name>A0A0Q8V695_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16160</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893612.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50144">
        <property type="protein sequence ID" value="KRC50144"/>
        <property type="gene ID" value="ASE19_16160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1944157at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359738" evidence="1">
        <location>
            <begin position="33"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="224" mass="23924" checksum="4EFE310D72796D36" modified="2016-01-20" version="1">MQHKNLARVVLTLLACLAGSLAVIGPAAPAHAAADATISHLTQDATVRTYGQYVTLKGWVTCCGSSTPGYGANVKLQRRIGSGGWTLFSTRTLTDPNRTPVWKFVPAASASYRMYYVGTAYTKPSVSPVLTVLVRRNLGTSWNASTRVLGGKVTPAYAGRAITIQKAACSTCSWSTYKTILTTSDSRWSVRLPAYSKRTYFRAYLPPSNGYGGSLTSPVSTLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6L6</accession>
    <name>A0A0Q8V6L6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Ribulokinase</fullName>
            <ecNumber evidence="3 4">2.7.1.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">araB</name>
        <name evidence="7" type="ORF">ASE19_11250</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>ATP + D-ribulose = ADP + D-ribulose 5-phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17601"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17173"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.16"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>ATP + L-ribulose = ADP + H(+) + L-ribulose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:22072"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16880"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58226"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the ribulokinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.16" evidence="3 4"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894903.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52970">
        <property type="protein sequence ID" value="KRC52970"/>
        <property type="gene ID" value="ASE19_11250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1619686at2"/>
    <dbReference type="UniPathway" id="UPA00145">
        <property type="reaction ID" value="UER00566"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019150">
        <property type="term" value="F:D-ribulokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008741">
        <property type="term" value="F:ribulokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019569">
        <property type="term" value="P:L-arabinose catabolic process to xylulose 5-phosphate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07781">
        <property type="entry name" value="FGGY_RBK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00520">
        <property type="entry name" value="Ribulokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000577">
        <property type="entry name" value="Carb_kinase_FGGY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018485">
        <property type="entry name" value="Carb_kinase_FGGY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018483">
        <property type="entry name" value="Carb_kinase_FGGY_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018484">
        <property type="entry name" value="Carb_kinase_FGGY_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005929">
        <property type="entry name" value="Ribulokinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02782">
        <property type="entry name" value="FGGY_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00370">
        <property type="entry name" value="FGGY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000538">
        <property type="entry name" value="GlpK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01234">
        <property type="entry name" value="L-ribulokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00445">
        <property type="entry name" value="FGGY_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3 4" id="KW-0054">Arabinose catabolism</keyword>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 3 4" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="3 4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="FGGY_N" evidence="5">
        <location>
            <begin position="8"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="domain" description="FGGY_C" evidence="6">
        <location>
            <begin position="292"/>
            <end position="489"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="559" mass="59729" checksum="1AAA98C2BA2F8103" modified="2016-01-20" version="1">MSAGQEQYTIGVDYGTLSGRAVVVRVSDGAELGSAVHAYEHAVVDDTLPGTGEALPPEWALQVPEDYRQVLRIAVPAAISAASIDPAQVIGIATDFTACTMVPTLEDGTPLCELPELAGRPHAFVKLWKHHAAQPHADRINQLAAERREDWLPRYGGLISSEWEFAKGLQLFEEDREVYDRMRHWVEAADWIVWQLCGSYVRNACSAGYKGILQDGAYPSTDFLEALAPGFGGFVADKLEHPIGELGAIAGRLTAEAAAWTGLPEGIAVAVGNVDAHVTAPAAQAVDPGQMVAIMGTSTCHVMSADVLREVPGMCGVVDGGIIAGRWGYEAGQSGVGDIFGWFVDNAVPASYAESAAAAGESVHEHLTRLASQQAIGEHGLVALDWHSGNRSVLVDHELSGLVVGLTLATRPEDVYRALLEATAFGTRVIVETFRDSGVPVEEFVVAGGLQKNALLMQIYSDVTRLPLSIIDSDQGPALGSAIHAAVAAGAYPDVPTAAKAMGKVRKAVYVPDETRAQAYDRLFVEYRDLHDHFGRGVTAMRRLKAIRREAVAGKENDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6T3</accession>
    <name>A0A0Q8V6T3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Arginine deiminase</fullName>
            <shortName evidence="3">ADI</shortName>
            <ecNumber evidence="3">3.5.3.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Arginine dihydrolase</fullName>
            <shortName evidence="3">AD</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">arcA</name>
        <name evidence="5" type="ORF">ASE19_12235</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>H2O + L-arginine = L-citrulline + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:19597"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:32682"/>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
            <dbReference type="EC" id="3.5.3.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid degradation; L-arginine degradation via ADI pathway; carbamoyl phosphate from L-arginine: step 1/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the arginine deiminase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.3.6" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895068.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53141">
        <property type="protein sequence ID" value="KRC53141"/>
        <property type="gene ID" value="ASE19_12235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="592329at2"/>
    <dbReference type="UniPathway" id="UPA00254">
        <property type="reaction ID" value="UER00364"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016990">
        <property type="term" value="F:arginine deiminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019547">
        <property type="term" value="P:arginine catabolic process to ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018101">
        <property type="term" value="P:protein citrullination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00242">
        <property type="entry name" value="Arg_deiminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003876">
        <property type="entry name" value="Arg_deiminase"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006356">
        <property type="entry name" value="Arg_deiminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01466">
        <property type="entry name" value="ARGDEIMINASE"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0056">Arginine metabolism</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Amidino-cysteine intermediate" evidence="3 4">
        <location>
            <position position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR006356-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="409" mass="44023" checksum="C58768FFB4D1E74C" modified="2016-01-20" version="1">MTPLGADSEVGRLRSVLLHRPGPELQRLTPRNNDRLLFDGIPWVARAQEEHDAFAEALRARGVEVLYLTDLLTETLALPAARAAVTDTTLTGTSGRDLGDPVRAYLRAMFDDATPEGLTYLLTAGVRNDEARAGLGSGTLVTALLADETFLVAPLPNLLFTRDSSVWLRDRVAITSLAMPARRRETQLTELIYHFHPRFAGTGRIHGHHLEHVEGGDVLLLAPGVIAVGVGERTTPAGAERLARQVFASGLAETVLAVPIAQERATMHLDTVCTMVDVDKVVMYPNVADTLTAYAVTPREPGSPDLEVAPPEPFLVAAAKAMQIDTLHRIDTGLDPVTAEREQWDDGNNTLALAPRLAVAYERNDGTNARLEEEGIEVIRIAGSELGSGRGGPRCMSCPVARDPLVPAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V770</accession>
    <name>A0A0Q8V770_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 15">NAD(P) transhydrogenase subunit beta</fullName>
            <ecNumber evidence="6 15">7.1.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">Nicotinamide nucleotide transhydrogenase subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="18" type="primary">pntB</name>
        <name evidence="18" type="ORF">ASE19_11385</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <reference evidence="18 19" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 15">The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>H(+)(in) + NAD(+) + NADPH = H(+)(out) + NADH + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:47992"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="7.1.1.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell inner membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 15">Belongs to the PNT beta subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.1" evidence="6 15"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894921.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52991">
        <property type="protein sequence ID" value="KRC52991"/>
        <property type="gene ID" value="ASE19_11385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="788546at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008750">
        <property type="term" value="F:NAD(P)+ transhydrogenase (AB-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012136">
        <property type="entry name" value="NADH_DH_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034300">
        <property type="entry name" value="PNTB-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02233">
        <property type="entry name" value="PNTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000204">
        <property type="entry name" value="PNTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 15" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="8 15" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14 15 16" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-0520">NAD</keyword>
    <keyword evidence="11 15" id="KW-0521">NADP</keyword>
    <keyword evidence="18" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12 15" id="KW-1278">Translocase</keyword>
    <keyword evidence="10 16" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="13 16" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="66"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="135"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="172"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="201"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="228"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="253"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="domain" description="PNTB" evidence="17">
        <location>
            <begin position="9"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00014581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRNR" id="PIRNR000204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF02233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="KRC52991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="474" mass="49505" checksum="96BA905E5EA5827A" modified="2016-01-20" version="1">MDIDSITGAAYIVAALLFILSLAGLSKHETAKSGLTFGIVGMAVALVATIVGVIDVSEFLDNRALVIILMLAAVGVGGAIGLWRAKIVEMTGMPELIAMLHSFVGLAAVAIGWNGHVLGSHESMDSLVNIHEAEVAIGIFIGAVTFTGSIVANLKLSARMNSAPLMLPGKNFINVGSLVLFAILTGVYVSMDTYDNTSADILLGVITLLALALGWHLVASIGGGDMPVVVSMLNSYSGWAAAASGFLLNNDLLIVTGALVGSSGAYLSYIMCKAMNRSFISVIAGGFGIAAPAGDDKDYGEHREIQADAVAELLSNASSVVITPGYGMAVAQAQYPVADLTAKLRAKGIDVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFPETDVVLVIGANDTVNPAASEDPTSPIAGMPVLEVWNAKDVIVFKRSMAAGYAGVQNPLFFRENSQMLFGDAKDRVEDIVRALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7B3</accession>
    <name>A0A0Q8V7B3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transglut_core3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14890</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51379">
        <property type="protein sequence ID" value="KRC51379"/>
        <property type="gene ID" value="ASE19_14890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1915528at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032708">
        <property type="entry name" value="McjB_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13471">
        <property type="entry name" value="Transglut_core3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transglut_core3" evidence="1">
        <location>
            <begin position="2"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="127" mass="13941" checksum="E8E3C0CCBD827E80" modified="2016-01-20" version="1">MLVLPFKVVRHLLGEHRSPRATGPDTSPVPLLLRGKDLDRARKIGWTVQTAARRTPWRSECFPQALTARLLLRAARVPHVVTFGLRRDDAGTLKAHVWVAADQVAVTGGSGSTWTGVGSFAWAPRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7B6</accession>
    <name>A0A0Q8V7B6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6457 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12170</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895055.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53128">
        <property type="protein sequence ID" value="KRC53128"/>
        <property type="gene ID" value="ASE19_12170"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1980328at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045598">
        <property type="entry name" value="DUF6457"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20058">
        <property type="entry name" value="DUF6457"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6457" evidence="1">
        <location>
            <begin position="2"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="107" mass="11368" checksum="55B458D84BD25264" modified="2016-01-20" version="1">MNLHDWIDELCDVLDIEAEADEGLLVDLSGITRDNVHPAAGAVTAFLLGFAAGEQGADPDQVERLAAKAQALAESWDRPAGAASVEDEDVEIEELADADYEDSDSLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7C1</accession>
    <name>A0A0Q8V7C1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16815</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50257">
        <property type="protein sequence ID" value="KRC50257"/>
        <property type="gene ID" value="ASE19_16815"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="15368" checksum="9A1DA99CC09DFCCA" modified="2016-01-20" version="1">MLGTTSASSGQGATVQDDPRDIVSATVAHRTQAIAVKVVTQYSYTTLTVVVEARRAGVVRRYRAFVFDETSGWKVIGPAGGIRCTAAQRDAYGASTVTIRGSFARRCFGSPGAIRFRVVSEGDPGLDQGVLDRTAWSRWLRPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7E9</accession>
    <name>A0A0Q8V7E9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12185</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895058.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53131">
        <property type="protein sequence ID" value="KRC53131"/>
        <property type="gene ID" value="ASE19_12185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359778" evidence="2">
        <location>
            <begin position="30"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="206"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="233" mass="23394" checksum="78D457580E17DE21" modified="2016-01-20" version="1">MRSAPRRLRAALVTAAPAAALAAAVVVPAAPSGAVAPAAIPVSCTALDLDDATAVAANAEGTDDVFHAVVRQVAVVRSTAGSTGTATDAATATTTPGVPAARTLRVTVRVLNVLTGDLTDGRNVNVLVTGTDGKLPPRRNEQYLFFTTGANDALHAVDCNGYVATPNLDTVTLDLLRDALAPEDDADVVLTAPSGGSDGPPSLGRVVAPGAAITLVGLLGLVLLGWTGRRPTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Z0</accession>
    <name>A0A0Q8V7Z0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_13360</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53336">
        <property type="protein sequence ID" value="KRC53336"/>
        <property type="gene ID" value="ASE19_13360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="334"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="6">
        <location>
            <begin position="13"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="305"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="357"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="455"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="367"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="4">
        <location>
            <begin position="467"/>
            <end position="481"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="498" mass="51865" checksum="D12A143384C97F27" modified="2016-01-20" version="1">MTEQQFADRAGRYHLDSVIATGGMGVVWRGTDTRLNRPVAVKVLKAEYADDPMFRTRFEGEARSAAALHHPGIAGVYDYGADESGHLPPYLVMELVDGQPLSALLATARSNGRTLDTAVVQDLIAQAGEALGVAHRAGIVHRDVKPANLLVTPDRQVKITDFGIARAADSVALTRTGSVMGTPQYLSPEQARGNPSTPASDVYSLGVVAFECLTGRRPFEAETPVATALAHLQQPIPPLPATVPAPLAAVVTRALAKDPAERYVDGAAFAEAFRNPSGAAAVAPPPTPAEGATQVMPPVVAAPVPVPGAPMRRLDSPSAYAGEEERKQPGKSPWPAAIAVILLVVAAVVAAILLFGGGDDEEPTVDDPTSAATTPTTPTEGTTTADTTVEVDAGDYVCTVDYRDAQSDLRDLGLQVSVQAYDRTNTGECAEGTVADISPAGTLDEGDSVVISYWGPVEQTEPTEPTTPTDPTTPTDPTTPTDPTTDPTDLLSDLGADG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V890</accession>
    <name>A0A0Q8V890_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Succinate-semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13885</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897073.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53430">
        <property type="protein sequence ID" value="KRC53430"/>
        <property type="gene ID" value="ASE19_13885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="384611at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004030">
        <property type="term" value="F:aldehyde dehydrogenase [NAD(P)+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07100">
        <property type="entry name" value="ALDH_SSADH1_GabD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044148">
        <property type="entry name" value="ALDH_GabD1-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="2">
        <location>
            <begin position="7"/>
            <end position="445"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="449" mass="47648" checksum="72A4C6CABCD59B9B" modified="2016-01-20" version="1">MTTPIEYAVRNPATGELVESFPTATDAEVRAAVDAAAAAYATWGRTSALADRVALIRRVAELHRERQAELAAAMVEEMGKPLEDAEGEVDFSASIYEFYADNAERFLADEEIALGEGEGTAVVRRTPVGPLLGIMPWNFPVYQIARFAGPNLTTGNTIVLKHAPQCPRSAALQEQIFRDAGFPEGAYVNIYATNEQIADVIADPRIQGVSLTGSERAGAAVAEIAGRNLKKVVLELGGSDPFIVLSTDDLDATVDAAVFARMDNAGQVCNGGKRFIVLDELYDDFVSRFTEKVLAASESSPLSSATAADNLATQVEAAVAGGASLASKGERNGAFFPSGVLSGITTDNPAYQQELFGPVAMVFRASDEADAVRIANDTPYGLGSYVFSADPAQAQRVADQIEAGMVFVNGVGLDAAELPFGGIKRSGFGRELGRFGMEEFVNKKLIRTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8T6</accession>
    <name>A0A0Q8V8T6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Epimerase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14485</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897136.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53690">
        <property type="protein sequence ID" value="KRC53690"/>
        <property type="gene ID" value="ASE19_14485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1928091at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="1">
        <location>
            <begin position="88"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="33756" checksum="F2BEDFC4F45DE361" modified="2016-01-20" version="1">MRLLVLGGTQFLSRAVAAEAVRRGHDVVCANRGRSGAVPTGATTVRWDRDEEAPAALLDAGPYDAVVDVARQPSHVERALVAVPDAHWVFVSTISVYADDADPGGPGVGALKDAIGEDSADPEAYGGLKIACEQLVLDAVPSAAVLRPGLIVGPGDPSGRFAYWARRAGDTGELVGPGEPSARVQVIDVRDLAAWTVTAAEQRLAGTYDAVGPALPFADFLAAVAPDATVTWLPDAFLEAEGVAPWTGPASIPVWLPRPAYDGMLAHDAQPALDAGLVVRPLAETARDTRVWLESDPAARIGGITREREADLLTRWREQEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8U6</accession>
    <name>A0A0Q8V8U6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14505</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53540">
        <property type="protein sequence ID" value="KRC53540"/>
        <property type="gene ID" value="ASE19_14505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2216913at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359819" evidence="1">
        <location>
            <begin position="32"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="155" mass="16159" checksum="DB15326B883BC265" modified="2016-01-20" version="1">MNRYGLRMKPVLAVAAVACLLLSGCGSDDSAKDGGDRGVTITKAQFIIQGDAICTSGNDRIAAAEKKMPGEPTKDQVVAFVTDTLVPQVAAQAKALRSLPEPDEGADDVEAMLDSLDAAVKALRADPEKALTGDAGFDEANQLAKDYGFKVCGEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V901</accession>
    <name>A0A0Q8V901_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TYR_PHOSPHATASE_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14355</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897138.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53688">
        <property type="protein sequence ID" value="KRC53688"/>
        <property type="gene ID" value="ASE19_14355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1972497at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016311">
        <property type="term" value="P:dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000387">
        <property type="entry name" value="Tyr_Pase_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="SSF52799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50056">
        <property type="entry name" value="TYR_PHOSPHATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TYR_PHOSPHATASE_2" evidence="1">
        <location>
            <begin position="67"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="16026" checksum="5636AFE5FF129E7E" modified="2016-01-20" version="1">MPLCEDPWNEVVPGLFQGGHDVRSQARTCVVGDEFDLVISMVTRSGYGPADGVEHHVLRMADAAVDAGVAARVQSLAELAAGAVRDGRRVLVRCSGGLNRSGLVVASTLVALGHDVPTALELVRRARGPWALTNPMFVQHLRTLEPVRPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V978</accession>
    <name>A0A0Q8V978_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glycos_transf_1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07410</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53902">
        <property type="protein sequence ID" value="KRC53902"/>
        <property type="gene ID" value="ASE19_07410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="948440at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="156"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="331" mass="35736" checksum="4771846FA47FCFE1" modified="2016-01-20" version="1">MRGWVEAFPDDHITVLFGPDSERFATPPSVATTEISGTGPLGKLWSRSGAIRRAARELDVDAVLSSAPASSLLGTRQPRGLIFYDLRHELRPGQFSRKTRIARRVSWAWSMHLADGIFCISDRSRDDLRSRHPRLGRTAVTAALGSDHALAWRRPEPGERPYALAFGHFGNKNADAVIAGWADFVAAHPGWVLRLVGMGRADREAAQAQVDRLGSTDSVELMPWLDDEAFGECFAGAGMVVFPSDFEGFGLPAAEALRLGIPTVVSDDPALAEVTGGYAVVTASTKPADLAVAMGRATELSAERIAEGQAFAEAFTWRRTAEVVRSGLILV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9L2</accession>
    <name>A0A0Q8V9L2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">MMPL domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_06740</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895222.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53791">
        <property type="protein sequence ID" value="KRC53791"/>
        <property type="gene ID" value="ASE19_06740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="149255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="235"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="262"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="289"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="317"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="343"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="386"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="575"/>
            <end position="593"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="600"/>
            <end position="621"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="627"/>
            <end position="646"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="655"/>
            <end position="674"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="680"/>
            <end position="698"/>
        </location>
    </feature>
    <feature type="domain" description="MMPL" evidence="8">
        <location>
            <begin position="169"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="708"/>
            <end position="748"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="731"/>
            <end position="748"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF03176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="748" mass="77601" checksum="3BC59B27934B4FB5" modified="2016-01-20" version="1">MELDTSTASFLPSGDPVEKALAAKSDDFGGDPVVVLLETKAPRVLFTDQEQLVRLIGLEGKLADLPDVAAVYGPGTVLNQTAGAAQDMLAQISGRRDGYRNEVMAAARKKGLTDAQVKRLGEAALARFDERYGSLMVQGLPAGLPTVKNPRFVQTLLFDPETLKARPQWRFLAPRGTTVAILVRPRASLDAEATSQLVDGVRRTVKEADLEIERTTITGSPAVAAGLADRGRAELPVLGAVAIAAVSLVFFLSGWTQRRRALLRPIASALIGTAATLAAFGWAGQTVSLGVVAFLPILIGIGSDFPLYWSRGIADRAVLVAATAAAVGFSSLALSPLPFVRELGVALAIGLVFTVAAAALARKVFGPVPGPAGRSLVMARRGRWSTRARIGAACIVALSGVIGWIALAQMDVEAQPDRLAAGLPELQDAAHAEEILGSSGEVSVVVASAKVTDPDVLAWTKKVQERIVTDLGDRVHPVLSAADLLRFVGDHPSADQVDAAVAAIPPYLSSAVIKSDRSEALLVLGVEFDDVDELGELLDDLRSALVEPPEGVTVQAVGLPVSAARGLELVSESRLVINLAGIGAAGFVILVGLRSRRDAARTVLTIAVATGWVALIASASAGSLNPLTVAVGSLVTATGSEFAILLRRGRDPRTVATAALAGTVGYLTLALSELAVLRDFGLLLAVSVVCSFAAAYVVDGICGGADERDSAPGTSPVAQRAPMALAVRGNGGSRDDHDGPATKDEELP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9P3</accession>
    <name>A0A0Q8V9P3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_06960</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895254.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53823">
        <property type="protein sequence ID" value="KRC53823"/>
        <property type="gene ID" value="ASE19_06960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1108236at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="59"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="90"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="115"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="152"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="179"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="211"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="238"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="280"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="314"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="345"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="371"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="416"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="456"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="24"/>
            <end position="480"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="490" mass="50676" checksum="1A6D9299EB227FFE" modified="2016-01-20" version="1">MSSTTTVTAGPSHTYPSLRAAWIPMAALCLAFFVEMVDNTLLSIALPTIGRDLGSGTTALQWVTGAYSLTFGGLLLTAGSVADRFGRRRVLQVGLAVFGLLSLLVILVHTAGELIALRAALGVAAAAMAPITNSLVFRLFDDKTLRMRAMTVMILVGMSGFILGPLLGGTALAHVRWEWLLLVNAPIALVAFVGVRLGVPADDPEGLTKDRLDVPGTLFSVTAIGLACWSLTSGVENGWLSALTLASAVGAVVAGLGFVWRERRTDSPMLDLGLFSDGTVRGAAIAQVGTSIAMASVMFGLILHFQFAYGWSPVRAGLANLPIIVTMIVASPLSEGLAARFGHRIACLVGALALAGSLAGLAWGVEHGYPAIAAAMVVMTVGLRIVMTICAIALVDAMPANRTSMGAALNDTAQEIGTSVGTAVVGTMIAALVTTQLPAGTWSSALVQSFFHGERITYAVLAAVVGLVAVVGALTLTDSRSTEEHPAEPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9R4</accession>
    <name>A0A0Q8V9R4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09260</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894555.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52617">
        <property type="protein sequence ID" value="KRC52617"/>
        <property type="gene ID" value="ASE19_09260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="212" mass="21747" checksum="B130B33F639C9124" modified="2016-01-20" version="1">MQNSLAELRVANWTRLGGSSVLGDPVTESMLDGLAAKAREAARAQGYAVGWAEGRRAAAEQAAAEEADRIGHHAAAEARREAEHAAAVDALGRAAEQVRGLLDGLAAAIEEQATEVALALTAEIVGARAASATAADVVVRVLQVLPPVPVGRVRLHPSVVGDAAVRDLADRGLEVVPDAALGPADALVEAPDGSVTDLRIDTAMARVREVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9W6</accession>
    <name>A0A0Q8V9W6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">XRE family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08210</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895476.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54044">
        <property type="protein sequence ID" value="KRC54044"/>
        <property type="gene ID" value="ASE19_08210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="705269at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041413">
        <property type="entry name" value="MLTR_LBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17765">
        <property type="entry name" value="MLTR_LBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="12"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="254" mass="27779" checksum="8B77AE683D1ECC40" modified="2016-01-20" version="1">MALVNATAGVLIREWRQRRHLSQLELASRADVSTRHLSWIETGRSRPTSAMVMRLCDHLEVPLREQNHVLLAAGHAPAHPEHQLSDPPMAEANAALETILRGHQPYPALVVDRHWELISANDAAYAFLDGVDADLLEPPINVVRLSIHPRGLGGRIVNLAEWRAHLAERLRREYDASGDAELGALLAEVSAGGVEPVESSALVVPLQLRMPDGSVLSFITTTTVFGTPREVTLSELAIEAFYPADEETRAALNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9X1</accession>
    <name>A0A0Q8V9X1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltransf_21 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07910</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53992">
        <property type="protein sequence ID" value="KRC53992"/>
        <property type="gene ID" value="ASE19_07910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1340956at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006342">
        <property type="entry name" value="FkbM_mtfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05050">
        <property type="entry name" value="Methyltransf_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01444">
        <property type="entry name" value="fkbM_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_21" evidence="1">
        <location>
            <begin position="65"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="233" mass="25300" checksum="735E458E8241D214" modified="2016-01-20" version="1">MQEPAEPDHLTAENMYGKYAIPRSSAHRRAARKILAGQVYEPDTIALIRSECGEGDVVHAGTFFGDFLPGLSSALAPGARIYAFEPNPDNFECALKTLELNQIDNVQLECLGLGPGPGRSELLTVNADGVPRGGASRLRWDGEELSGQSATVEVAIDSIDSRVPADRTLSVLQLDVEGHEQAALEGALETIRRCRPLILLESVPSEEWLAEHLLPLGYQAAERVHHNTAFRVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VB69</accession>
    <name>A0A0Q8VB69_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_12075</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53113">
        <property type="protein sequence ID" value="KRC53113"/>
        <property type="gene ID" value="ASE19_12075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045621">
        <property type="entry name" value="BPD_transp_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19300">
        <property type="entry name" value="BPD_transp_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359860" description="ABC transmembrane type-1 domain-containing protein" evidence="6">
        <location>
            <begin position="28"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="85"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="133"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="165"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="228"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="270"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="85"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="303" mass="31339" checksum="512DA422173AA2AD" modified="2016-01-20" version="1">MGIPLMAVISLVVFVLSSLAGGSTGQAILGPTASPESIAELNAQLGADRPVLVQYGDWLRNALSGDLGTSVTTGFPVSETISSRLAVTLSLSVGALLLVIVLGVASGAVAAIRGGATGRLAEVLAVLGRGLPSFWLALIAVLVFGVNLAWVPVSGYVPIGESASGWVQSLIVPVAVLGVAETALVAVVTRAEMLSAMRSDYVRSLRSNGYPWKRIVFKHIAKNAAGPVLTMVSLVFVGLLGGTILMEQIFGMPGLGTLMVSATTKHDLPVIQGLAVFYTAMVVVVFLMTDIATGYLNPKVRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCB9</accession>
    <name>A0A0Q8VCB9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cupin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04575</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894326.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54756">
        <property type="protein sequence ID" value="KRC54756"/>
        <property type="gene ID" value="ASE19_04575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1565693at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06121">
        <property type="entry name" value="cupin_YML079wp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009327">
        <property type="entry name" value="Cupin_DUF985"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039935">
        <property type="entry name" value="YML079W-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33387">
        <property type="entry name" value="PTHR33387"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06172">
        <property type="entry name" value="Cupin_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_5" evidence="1">
        <location>
            <begin position="9"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="136" mass="14663" checksum="7DE59C59D844BFDC" modified="2016-01-20" version="1">MDRPPLAVRHDLAPHPEGGWYRQTWAAPTTVTLPDGRVRPTATLIHFLLPAGESSAWHRVRSDEIWLAHLGTVTVELGGDGPAPDPAAARQVVVGADEPQGRVPAGVWQRTLVAETDALVSCLVSPGFDFEDFELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCG2</accession>
    <name>A0A0Q8VCG2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Putative pterin-4-alpha-carbinolamine dehydratase</fullName>
            <ecNumber evidence="3">4.2.1.96</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_14350</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(4aS,6R)-4a-hydroxy-L-erythro-5,6,7,8-tetrahydrobiopterin = (6R)-L-erythro-6,7-dihydrobiopterin + H2O</text>
            <dbReference type="Rhea" id="RHEA:11920"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15642"/>
            <dbReference type="ChEBI" id="CHEBI:43120"/>
            <dbReference type="EC" id="4.2.1.96"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the pterin-4-alpha-carbinolamine dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.96" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896990.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53513">
        <property type="protein sequence ID" value="KRC53513"/>
        <property type="gene ID" value="ASE19_14350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1862336at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008124">
        <property type="term" value="F:4-alpha-hydroxytetrahydrobiopterin dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006729">
        <property type="term" value="P:tetrahydrobiopterin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036428">
        <property type="entry name" value="PCD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001533">
        <property type="entry name" value="Pterin_deHydtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01329">
        <property type="entry name" value="Pterin_4a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55248">
        <property type="entry name" value="SSF55248"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021735"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="103" mass="10984" checksum="47B4C5276F1FC478" modified="2016-01-20" version="1">MARSYETVTADQFTGTEGLAAWRVEGAQATATFRTGDFVTGLRLVNEIGRLAEEADHHPDLTLRYPEVVVWLGTHDTGTVTDADVALARGITAAARDLGISPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCK0</accession>
    <name>A0A0Q8VCK0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05760</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54954">
        <property type="protein sequence ID" value="KRC54954"/>
        <property type="gene ID" value="ASE19_05760"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="94" mass="8486" checksum="B8F548D157C8F4A7" modified="2016-01-20" version="1">MAVGDGAVPEVVGVGATTGGGGTTGSVTGPAGSGVAGGSDTEPAVGVGSSVALVEVEPAVGADDGSLLSLPSLQAPARASTRVAAAAAANRLTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCK5</accession>
    <name>A0A0Q8VCK5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Magnesium transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05070</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894243.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54838">
        <property type="protein sequence ID" value="KRC54838"/>
        <property type="gene ID" value="ASE19_05070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="663062at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015095">
        <property type="term" value="F:magnesium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.60.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006668">
        <property type="entry name" value="Mg_transptr_MgtE_intracell_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038076">
        <property type="entry name" value="MgtE_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006669">
        <property type="entry name" value="MgtE_transporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027275">
        <property type="entry name" value="PRC-brl_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011033">
        <property type="entry name" value="PRC_barrel-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43773">
        <property type="entry name" value="PTHR43773"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03448">
        <property type="entry name" value="MgtE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05239">
        <property type="entry name" value="PRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00924">
        <property type="entry name" value="MgtE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50346">
        <property type="entry name" value="SSF50346"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0129">CBS domain</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="352"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="417" mass="45844" checksum="57B164847A2778C6" modified="2016-01-20" version="1">MSTTPTRVFAARLVGLPIFDPQGDQVGKVRDLVVAMRGEGTQPRVLGMVVEVFGRRRIFVPMTRVTNIDSGHVYSTGLLNMRRFEQRSTETLVIGQMLDRTVTIKGSGVTGSVYDVAMEPARNRDWVLSRVAVREPSKGFRRRGQTHVVEWRDVVGLTRVDEAQGATHLIAALNEMRPADAASILHDLPPERRTAVALALDDERLADVLEEMPEDDQVEILKGLDSERAADVLEEMSPDDAADLVRDLPPETAEILLELMEPEEAEDVRRLMSYVEDTAGGMMTSEPVILGPDATVADALAHVRNPELTPAAAALVYVCRPPLETPTGKLLGVAHIQRLLREPPSSLVAGALDDSLEPLRPESTLEEVAAHLATYNLVAAPVVDEDRRLVGAVTVDDLLDHMLPANWRERARNRGPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCL4</accession>
    <name>A0A0Q8VCL4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gamma-glutamyl cyclotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894105.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54970">
        <property type="protein sequence ID" value="KRC54970"/>
        <property type="gene ID" value="ASE19_05855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984556at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003839">
        <property type="term" value="F:gamma-glutamylcyclotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06661">
        <property type="entry name" value="GGCT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017939">
        <property type="entry name" value="G-Glutamylcylcotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013024">
        <property type="entry name" value="GGCT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036568">
        <property type="entry name" value="GGCT-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12935">
        <property type="entry name" value="PTHR12935"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110857">
        <property type="entry name" value="SSF110857"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="16462" checksum="78CECEA45DB3918F" modified="2016-01-20" version="1">MTSYAAYGTNLDPIRMGERCPHSPLQTTGWLTGWRLTFGGEEHGWDGALATIVQDPFEQVFVAVYDVSPLDEPNLDQWESADSGLYRRTKVRISTLAGEVVAWTYVLDAYEGGLPSASYLGVIANAAEAADAPDDYVQALRRRDCRSTGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCY2</accession>
    <name>A0A0Q8VCY2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894121.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54955">
        <property type="protein sequence ID" value="KRC54955"/>
        <property type="gene ID" value="ASE19_05765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1781at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359915" evidence="1">
        <location>
            <begin position="40"/>
            <end position="465"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="465" mass="48210" checksum="AF71B18435B9178E" modified="2016-01-20" version="1">MNFPVPLRVPLRPSCLRLLAGVLVILLSGLLVTGPPARAESVTGGYAFGTTATCATAQGVLVGVRSPAVSVRMRSAWARAYKAQRVRVTARLQGRTPAGWANVTTSGAVRTRAVLVPRSYVTRSYRLGALPALTVPPLFRDDYRAVMRLQWYSPRTGRVEGAVTKVVGRYLTGAVTSTTCRAASGPSGIGQLSAVGTAASGQVKVTFTVGSAPMAQQVQCRPSCGNLASTDASAEGHSGRTYTLGGLSDGQPSVVDLRSCLAAHPTICSTWTSDAATPYGAIPTPTLSLNASGQCIQWAASGGVAGKQVTVVVRLDGAQIESSTASAAFARSGVQCVGYSQTRTISVSVYDSSVTSEQPVPRSAASASTSATTPAAPAKVTVGKTGNAQGMPGCFSASCAYLQVTLENFSGPVTCSAHQNNPNETDWTNTYNLGNGVSKPGWYYGWPGSQVWVVCGGVESNHFTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD32</accession>
    <name>A0A0Q8VD32_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894071.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="ESTHER" id="9actn-a0a0q8vd32">
        <property type="family name" value="Duf_1023"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55003">
        <property type="protein sequence ID" value="KRC55003"/>
        <property type="gene ID" value="ASE19_06045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2018813at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010427">
        <property type="entry name" value="DUF1023"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06259">
        <property type="entry name" value="Abhydrolase_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="121"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="601" mass="62339" checksum="E0591893A9DACFB0" modified="2016-01-20" version="1">MSTVVVPVDVPALPVMGSLPDGAVGLENDLRAALVNAKDVQAWAEAISADAFTGDASDASGHALTRFSRRLDVTEAALERAVLATSHFEDRLARLFSQSLTLDGDRTSLNGDLANLRADVAAASEADTAELQARADRLEARSTRLRDDIAAWSTRYADAEAEFVAALAAVDTVEEGRVAAADPGRVDPAVVVRTLGSDADDPAAVRRWWDRLSEAERQAVIAELPALVGNLAGVPVRYRDAANRAAVGSDVDGLTAQQADEPLTEQERDRLANASAVADVLDDYSQDVDPVTGELLAHLTQYQPDEHSGDGGVALFLGDPDVADHVSVYVPGTLSETGTLDGTIGNVDALHDAAGRSGDGTVAVGFWLDYDAPSIDGFSPGEIADLARVVTPGEAAAGGRDLADYLDGLRASDEGAPAHLSLIGHSYGATTSAYAAHDGAPVDDLVLLGSPGSPTSTAAGLTSADVHVGSADFDPITLLGASGPGLPGPLGYDPAQDSFGGQRFEVDPGSYRVQDLFHNHSSYFDDASLSNITDIVTGHDPDPVDGRHPGSYQTLDQLLVGSSAVSGGEWLWERGEDVVDGVVGSVVGGVRGLAEGLVRFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDC1</accession>
    <name>A0A0Q8VDC1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glycosyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_09855</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894655.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52720">
        <property type="protein sequence ID" value="KRC52720"/>
        <property type="gene ID" value="ASE19_09855"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044249">
        <property type="term" value="P:cellular biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901576">
        <property type="term" value="P:organic substance biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="3">
        <location>
            <begin position="15"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="370" mass="39871" checksum="A22B5CEE16B6CC39" modified="2016-01-20" version="1">MRIAQLANFVGATSGGMRTAIEHLGRGYVDAGADRLLVIPGPVDAVTSTDLGDVVQVRAPRVGGGYRLIVEPWRVTEVLERWQPTSVEWSDKLTLLPVAWWARRNGVRSVLLSHERMGDMFAMRSGFDTTSKVSIGLLNRLLVRSFDTVVVTSRYAEDEFRSVAEAAGCPVERVPLGVDLDTFRPVPRGARSDELRLVHAGRLSREKSPHLAVATAVELHRRGVPVRMDVYGDGPHRDELEALAAGAPVHLHGYVDGRAALRDRLAAADVALSVCPGETFGLAVLEALACGTPVVTADRGGARELVDATSGDWGTPDPSSLADAVLRLAARTEDVVRRAARHRAEGFGWDRTVARMLALHAGDHVGVLTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDC2</accession>
    <name>A0A0Q8VDC2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06295</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894455.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55046">
        <property type="protein sequence ID" value="KRC55046"/>
        <property type="gene ID" value="ASE19_06295"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="133" mass="14639" checksum="3F50AB4A753A1D47" modified="2016-01-20" version="1">MFAITGCSESDRPAATTCDDMEAALFYELKDAAADLMEGTDYELETAYRGGCESMGKPGPYLYLASATWDVRGGMRILMSKSPWTRVVEQNGGVSWRDPDSRFSARPVRNNGQRVLALGFVDRAPVPDPDYLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE59</accession>
    <name>A0A0Q8VE59_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pyruvate dehydrogenase (Acetyl-transferring) E1 component subunit alpha</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_11000</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894857.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52925">
        <property type="protein sequence ID" value="KRC52925"/>
        <property type="gene ID" value="ASE19_11000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1248201at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016624">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001017">
        <property type="entry name" value="DH_E1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017596">
        <property type="entry name" value="PdhA/BkdA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11516:SF41">
        <property type="entry name" value="PTHR11516:SF41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00676">
        <property type="entry name" value="E1_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03181">
        <property type="entry name" value="PDH_E1_alph_x"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="E1_dh" evidence="3">
        <location>
            <begin position="48"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="375" mass="41132" checksum="5578C2FBCE9E0D62" modified="2016-01-20" version="1">MTDAVFGPAPGADEPELVQLLTPEGERVHPAAFDTDFTADQLRGFHRDMVLVRRVDNEATALQRHGELGLWPQLLGQEAAQIGAGRAMRPQDFAFPTYREHGVAWTRGIDPVRLLGLFRGTDQGGWDPQDHNFGLYSIVVGAHSLHATGYAMGVQRDGLVGTGDPERDTAVVACFGDGATSQGDVNESFVFAASYNAPVVFFCQNNQWAISEPLERQTRIPLYRRAQGFGFPGVRVDGNDVLATYAVVQAALQRARDGQGPTFVEAYTYRMGAHTTTDDPTRYRRGGDVEAWKAKDPIARLETHLRNEGLVDDAYLAAIAAEADALGERMRRECKELPEPVAHDIFDLVHVEQTPELAAQQAAYDAHAASFEEVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEE4</accession>
    <name>A0A0Q8VEE4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08495</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895521.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54089">
        <property type="protein sequence ID" value="KRC54089"/>
        <property type="gene ID" value="ASE19_08495"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1563126at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="187" mass="19695" checksum="B0CB92D3AD88FA6D" modified="2016-01-20" version="1">MIVDDVGRWLLGLAARSAPPELAGPAVGTTAAHRLGALLDEALAQSTQEAGDALLDALVRGLVPDEARVVAALAARGWSPLVHVEARRDGEDHLGLRNASLIGRQAGVALVRRTPFYVTRLLASGLVATTPERPERAEEYEVLLAEPDVLDAIRAAGRGPVGPRIRRGGLVLSDLGLQLWSSRQASG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEQ8</accession>
    <name>A0A0Q8VEQ8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Transcriptional regulator WhiB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">whiB</name>
        <name evidence="13" type="ORF">ASE19_08265</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Acts as a transcriptional regulator. Probably redox-responsive. The apo- but not holo-form probably binds DNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="11">Binds 1 [4Fe-4S] cluster per subunit. Following nitrosylation of the [4Fe-4S] cluster binds 1 [4Fe-8(NO)] cluster per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="11">The Fe-S cluster can be nitrosylated by nitric oxide (NO).</text>
    </comment>
    <comment type="PTM">
        <text evidence="11">Upon Fe-S cluster removal intramolecular disulfide bonds are formed.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the WhiB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895483.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54051">
        <property type="protein sequence ID" value="KRC54051"/>
        <property type="gene ID" value="ASE19_08265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1929976at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035731">
        <property type="term" value="F:dinitrosyl-iron complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01479">
        <property type="entry name" value="WhiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034768">
        <property type="entry name" value="4FE4S_WBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003482">
        <property type="entry name" value="Whib"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38839">
        <property type="entry name" value="PTHR38839"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02467">
        <property type="entry name" value="Whib"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51674">
        <property type="entry name" value="4FE4S_WBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 11" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 11" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8 11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 11" id="KW-0408">Iron</keyword>
    <keyword evidence="6 11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 11" id="KW-0804">Transcription</keyword>
    <keyword evidence="7 11" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="4Fe-4S Wbl-type" evidence="12">
        <location>
            <begin position="11"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51674"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC54051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="93" mass="10628" checksum="F41FFF64B991F351" modified="2016-01-20" version="1">MWVDDWAPRAACREEQPDQLFVRGAEQNKAKQVCAGCAVRTECLAEALDNQIEWGVWGGMTERERRALLRRRPSASWRKVLEDARDRQGTAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH30</accession>
    <name>A0A0Q8VH30_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Zinc protease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_02900</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the peptidase M16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892800.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56782">
        <property type="protein sequence ID" value="KRC56782"/>
        <property type="gene ID" value="ASE19_02900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1188251at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011765">
        <property type="entry name" value="Pept_M16_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001431">
        <property type="entry name" value="Pept_M16_Zn_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007863">
        <property type="entry name" value="Peptidase_M16_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00675">
        <property type="entry name" value="Peptidase_M16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05193">
        <property type="entry name" value="Peptidase_M16_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="SSF63411"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00143">
        <property type="entry name" value="INSULINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M16" evidence="4">
        <location>
            <begin position="52"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16_C" evidence="5">
        <location>
            <begin position="208"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF05193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="455" mass="48352" checksum="BC4F3097242D558B" modified="2016-01-20" version="1">MSNALKSTAGQQHADRPSAVSRVSTRTLETVRDDSGQVTSVVRRTQLPSGLRIVTEQMAGARSSSIGVWVGVGSRDETAATHGASHFLEHLLFKGTDERSALDISIALDAVGGEFNAFTAKEYTCFHARVLSDDLPLAVDVLGDMITGSVIAAHDVDAERDVILDEIAMHDDDPDDVVQNLLAELAWGAGTPLGRPIAGTDASIGAMTGAQIRRFYKRHYVPANTVISIAGAVDHDAAVKAVRKAFSRHDWLVGEAAPVPGRATSSKRRPRVSPGTAEVSRPFEQVNLVIGREGVTRDDERRYALGVLNTALGGGTSSRLFQEVRELRGLAYSVYSFASQYADSGIVGVAVGCLPDRTEEVLAVVREQLSTIAAEGISEDELARGKGQLVGGMILGLEDSGSRMMRIGKNELVHGEVLGIDEVIARIEAVTVEDVRAVAADVFGRPELLAVVGPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH83</accession>
    <name>A0A0Q8VH83_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09055</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52583">
        <property type="protein sequence ID" value="KRC52583"/>
        <property type="gene ID" value="ASE19_09055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="208" mass="21545" checksum="3737C838AC26E124" modified="2016-01-20" version="1">MGGGPMSVRVERGDVWTVTLDRPDRANALSAALVEALHGVLDEATTAPPEALVLRGNARHFAAGFDLGGLDTETDASLASRFLRIGLLLERLVAAPYPTVAVAEGAAVGAGADLVLACDHRLVDPSVTLRFPGSAFGVALGTVRRAEMGPDLTTGVPAALPDVLRAPHPPRPPHDSDAELAALARSVAVPGLRDRIAAYRATLTKENA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHA0</accession>
    <name>A0A0Q8VHA0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH araC/xylS-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09150</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894536.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52599">
        <property type="protein sequence ID" value="KRC52599"/>
        <property type="gene ID" value="ASE19_09150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1785082at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035418">
        <property type="entry name" value="AraC-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14525">
        <property type="entry name" value="AraC_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="209"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="312" mass="34471" checksum="972E652E39A5D617" modified="2016-01-20" version="1">MSGWFEISAADRPATERAEYWRNSVCDQFVPLAVEPDGDLLRGRVAGGNVAEIRMRRMRATRHRFERRGADIAETDPEVLHLLHMDHGETLVEQDDRTAAVRAGDLLLYDSTRPFRFRTDDDFQFTICLLPKRLLPVPERVQRQWTARALPTTGGVAAAVAPFLCSLTRATSDADAAQQLALQQAMVSMYVALLSEAGLGGNPPAVNLSLAKSFIARNLGDPGLTPADVAAACSISLSYLHRLFANDDATVAGYVREQRLQAVHRDLLDAAVEEPVAHVAERWGITDPAHFSRMFKKRFGVSPGELRRAARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHG1</accession>
    <name>A0A0Q8VHG1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04650</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894311.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54771">
        <property type="protein sequence ID" value="KRC54771"/>
        <property type="gene ID" value="ASE19_04650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1821970at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019639">
        <property type="entry name" value="DUF2505"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10698">
        <property type="entry name" value="DUF2505"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="17029" checksum="4F8F496B4689FFBC" modified="2016-01-20" version="1">MRFRRELSYEAAPADVFAMLADPAFREKVAAAQDVVSVDVTITPQGEGFTMVSDQVQRTAGLPAIAKKIAGDTTQAIIREEWSDATAGTIEITAPGKPTKMVGTIRLSAAGAGTSYVQELEVGVKVPLIAGKLEKIMADNIDEGLSVEHTTGIAWLRGER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHK8</accession>
    <name>A0A0Q8VHK8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13695</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897108.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53394">
        <property type="protein sequence ID" value="KRC53394"/>
        <property type="gene ID" value="ASE19_13695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2064737at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018511">
        <property type="entry name" value="Hemolysin-typ_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00330">
        <property type="entry name" value="HEMOLYSIN_CALCIUM"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360042" evidence="2">
        <location>
            <begin position="34"/>
            <end position="715"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="499"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="550"/>
            <end position="579"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="715" mass="71105" checksum="39F095E297904735" modified="2016-01-20" version="1">MHGRHLVRRTALVPAVTAGLLGASFLSPPGAQAAGEASCTIISPQVVLMYVNHPAVVPLLELSFGSGSAIVSINGSPVGSCALSGRTEVQVSSASGFGAWQVSDAGPFLNDAMQPSHFTFGENDPVVVVHGNPMTSASYQASGGTGVDIDGLPGPEINAATVYRELVLVGSDNNDTIDLAPNPMLVFDGTNTTIKGQGGNDTLRGGLHGDVIEGGSGNDQIEGWDGSDTLVPDGDADQVWGKASNGGPDTDDGAVDTFVVDFDGAEDTVRGDGFDAIDALSPLGVAFSNGGSHDDGSFQEGDTYSGIYDVTTGPGPDAIQTTGVGVVDAGDGNDTVLVGVSPINGVHADAGAGTDTLDLGEVAGPTDGSLSASGGGFVVPTFPQNLASHFEAMAGGSGPDTWTIDCACTATPRGGADDITFTRDGGRYVAEPTTDGADAVVAEDRVTVTADYAQRSAPVSLTLDAEAGDGATGEGDALDGITTLLGGSAADTLVGDSRANRIEGGAGNDTVNGRGGDDTLLGDDGADALTGGSGADQLLGGVGSDRLAGGDGDDRLLGDAATAPTGGNDTLDGGAGDDDLFGHAGNDVFTEGSVANGQDLLSGGPGTDLASYALRSAAVRLSLNGRYDDGATGEGDRINGDVENLTGGKGADTITGNALANLLTGGPGRDVLSGLAGNDTFQSLDRLVDSLLGGTGVDRAHRDTTDKVNSVEQRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHM6</accession>
    <name>A0A0Q8VHM6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ferritin</fullName>
            <ecNumber evidence="1">1.16.3.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03140</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Iron-storage protein.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>4 Fe(2+) + 6 H2O + O2 = 12 H(+) + 4 iron(III) oxide-hydroxide</text>
            <dbReference type="Rhea" id="RHEA:11972"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:78619"/>
            <dbReference type="EC" id="1.16.3.2"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ferritin family. Prokaryotic subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.16.3.2" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892839.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56820">
        <property type="protein sequence ID" value="KRC56820"/>
        <property type="gene ID" value="ASE19_03140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1890523at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008199">
        <property type="term" value="F:ferric iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006879">
        <property type="term" value="P:cellular iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006826">
        <property type="term" value="P:iron ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01055">
        <property type="entry name" value="Nonheme_Ferritin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001519">
        <property type="entry name" value="Ferritin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009040">
        <property type="entry name" value="Ferritin-like_diiron"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008331">
        <property type="entry name" value="Ferritin_DPS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041719">
        <property type="entry name" value="Ferritin_prok"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11431">
        <property type="entry name" value="PTHR11431"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00210">
        <property type="entry name" value="Ferritin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50905">
        <property type="entry name" value="FERRITIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0409">Iron storage</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ferritin-like diiron" evidence="2">
        <location>
            <begin position="1"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU361145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="174" mass="19327" checksum="387D110E3D97E5D2" modified="2016-01-20" version="1">MAAPRFTDQLTIQIGNEFAAHNQYLACAVHYDALTMPQMAGFFYAQALEEREHAMMMVQYLLDTDAPVVIPGVEAPISEFADITAPIALALEQEKRVTEQIYGLLRIAREENDFASEQFMQWFIKEQVEEVATMNDLLAVVTRSKDDINAIEDWIVREQGGGATDPTAPTAAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHN5</accession>
    <name>A0A0Q8VHN5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03070</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892830.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56811">
        <property type="protein sequence ID" value="KRC56811"/>
        <property type="gene ID" value="ASE19_03070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="918580at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005501">
        <property type="entry name" value="LamB/YcsF/PxpA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30292">
        <property type="entry name" value="PTHR30292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03746">
        <property type="entry name" value="LamB_YcsF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="240" mass="24111" checksum="63D97632F16C7712" modified="2016-01-20" version="1">MGGVDLNADVGESFGRWQLGDDDALLPHLTSANVACGFHAGDPLTLRRTCARAAELGVTVGAQVGYRDLAGFGRRYVDVPPAELEADVLYQLGALDGIARAAGARVAYLKPHGALYHAVSQHPGQADAVIAAVRAFGGLPVLGLAGSAFLAAVEAAGLEAVGEGFADRGYLPDGGLVPRSQPGALLTDPAVAAAQAVRLAESGVRSVCVHGDSPGAPELAAAVRAALDHAGFAVTSFAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHQ4</accession>
    <name>A0A0Q8VHQ4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 13">Phosphoenolpyruvate-protein phosphotransferase</fullName>
            <ecNumber evidence="5 13">2.7.3.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12 13">Phosphotransferase system, enzyme I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">ASE19_03385</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">Root79</strain>
        </source>
    </reference>
    <reference evidence="20 21" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>L-histidyl-[protein] + phosphoenolpyruvate = N(pros)-phospho-L-histidyl-[protein] + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:23880"/>
            <dbReference type="Rhea" id="RHEA-COMP:9745"/>
            <dbReference type="Rhea" id="RHEA-COMP:9746"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:29979"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:64837"/>
            <dbReference type="EC" id="2.7.3.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 13 16">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 13">Belongs to the PEP-utilizing enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.3.9" evidence="5 13"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892881.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57050">
        <property type="protein sequence ID" value="KRC57050"/>
        <property type="gene ID" value="ASE19_03385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="467393at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008965">
        <property type="term" value="F:phosphoenolpyruvate-protein phosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009401">
        <property type="term" value="P:phosphoenolpyruvate-dependent sugar phosphotransferase system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.274.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008279">
        <property type="entry name" value="PEP-util_enz_mobile_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018274">
        <property type="entry name" value="PEP_util_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000121">
        <property type="entry name" value="PEP_util_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023151">
        <property type="entry name" value="PEP_util_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036637">
        <property type="entry name" value="Phosphohistidine_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024692">
        <property type="entry name" value="PTS_EI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006318">
        <property type="entry name" value="PTS_EI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008731">
        <property type="entry name" value="PTS_EIN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036618">
        <property type="entry name" value="PtsI_HPr-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05524">
        <property type="entry name" value="PEP-utilisers_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00391">
        <property type="entry name" value="PEP-utilizers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02896">
        <property type="entry name" value="PEP-utilizers_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000732">
        <property type="entry name" value="PTS_enzyme_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47831">
        <property type="entry name" value="SSF47831"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52009">
        <property type="entry name" value="SSF52009"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01417">
        <property type="entry name" value="PTS_I_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00742">
        <property type="entry name" value="PEP_ENZYMES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00370">
        <property type="entry name" value="PEP_ENZYMES_PHOS_SITE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="13" id="KW-0418">Kinase</keyword>
    <keyword evidence="13 16" id="KW-0460">Magnesium</keyword>
    <keyword evidence="11 13 16" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 13" id="KW-0598">Phosphotransferase system</keyword>
    <keyword evidence="20" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 13" id="KW-0762">Sugar transport</keyword>
    <keyword evidence="13 20" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 13" id="KW-0813">Transport</keyword>
    <feature type="domain" description="PEP-utilisers_N" evidence="19">
        <location>
            <begin position="6"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilizers" evidence="17">
        <location>
            <begin position="153"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilizers_C" evidence="18">
        <location>
            <begin position="255"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="region of interest" description="PEP binding" evidence="15">
        <location>
            <begin position="440"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-phosphohistidine intermediate" evidence="14">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="14">
        <location>
            <position position="488"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="291"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="329"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="417"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="441"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="451"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00016544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00033235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRNR" id="PIRNR000732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR000732-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRSR" id="PIRSR000732-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR000732-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="Pfam" id="PF02896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="Pfam" id="PF05524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="KRC57050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="556" mass="56783" checksum="F353808E443247A4" modified="2016-01-20" version="1">MVTTFHGTPVVPGIAHGPAQLTVSDVSPDALARYGDGGHADEEAALAAYDTAVETVAEGFRRKAAAADGATAGVLTASAGLATDRGLRSAVRKNLRAGEPLLAAVDHAVEQFVTVFTGMGGLMAERVTDLRDIRTRVVARLVGEPEPGVTLPDEPVVLVATDLAPADTAGLDPALVLALVTERGGPTSHTAIIARQLGIPCVVGAAGVVAAVAGHTLLVDGATGTVELDPEPGAAAERVAADTQERAALAQWEGPGRTADGHPVKLLANVADQTSAVAAADGPVSGVGLFRTELSFLDRETEPTVEEQTAVYAGVLAPFAADERYVVVRTLDAGSDKPIAFATHPDEENPALGVRGLRLSFTDHGLLDRQLDAVAAAAQRSGATTWVMAPMVATVDEARDFARSARARGLVAGVMIEVPSAALLADRILAEVDFLSIGTNDLTQYTMAADRLCSDLAHLTDPWQPAVLQLVAMTAAAGERADKPVGVCGEAAADPLLACVLVGLGITSLSMAAAAVRPVGARLATATLEQCREMANAALAAADPSAAREAARAVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHS2</accession>
    <name>A0A0Q8VHS2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04210</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893099.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57066">
        <property type="protein sequence ID" value="KRC57066"/>
        <property type="gene ID" value="ASE19_04210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1602940at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="393" mass="44663" checksum="CDA9C594AF140903" modified="2016-01-20" version="1">MHRYSAANAHGRDMHEGVDVLEAAIATNDPAEIYAVTHQALASAIKVIARADDSAGIIGNACRRLLVLHPRAAAAAKVPVNKLVDWMMKFQFDDNDVDYFELDPVAYAPALGEVGIASYRRRLAEVEARLGPRPPTDERWRSAHSHEWFTLDWNAQRLAVLDHDIDAIIRTHARDRKVAAWLEDTAEAFEEIGEIDRAIDWAKQATDFDRGHQSLKAADYWCRLLEEHRPEETLEARLRVFRRWPSSSTATQLHNAAGERWADYRDEVLSSLSAIPRDAVLFALLTLKEPTFAWELAHSLALDSDQTWNELVKAYEKIDPLATLPIHRRLVETALVEAGAQHYRLAARRLAKMRKVADGTDRAVEVDDFIADLRETHRRRPRLQQEFDRAGLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHT2</accession>
    <name>A0A0Q8VHT2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 12</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02440</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892721.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56703">
        <property type="protein sequence ID" value="KRC56703"/>
        <property type="gene ID" value="ASE19_02440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1431378at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="30"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="237" mass="24500" checksum="2A723B5B1E930AB1" modified="2016-01-20" version="1">MASREQRGSVRTAVVWDALEAALAGGPRDVVDLGGGTGGFAVRLAESGHRVRVVDPSPDALAALARRAQEVDLEVTGLQGDVTDLVEVVGAGTADVVLCHGVLEVVDPALALARIGEVLRPGGLLSLVVGQRHAAVVARAMAGHFQQARSLLDDPEPVDGRTGRRFTAGELATLLAEAGFESTTVHAVRVFTDLVPAALVDLEPGAAAALVDLERAVAGRPEYLPLATQLHVLATRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHV4</accession>
    <name>A0A0Q8VHV4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07935</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895429.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53997">
        <property type="protein sequence ID" value="KRC53997"/>
        <property type="gene ID" value="ASE19_07935"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="242"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="311"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="247"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="334" mass="35590" checksum="B9F8F1C6207658C6" modified="2016-01-20" version="1">MSSHYDDLSAKGQSLFEIAKKAKEDMYGDSYNLETGDTYGDVDYGAGLEGFVSLFSDFYWYPDGSQWDSKIANLEQALYHVNSGNFDDPGGKIIPSNTELTELLTAAGFIGEWDGVAADEFISKHVLPFNLRMNNVYNAIAVLKGGYESLKVVWSKVPDNLEEIYSETKHALENCYECNADDWAMALKAASLVATVAVPFIGVAGLAVSAGATSITKEAVEQAEKVHGTISATFDAATAVGGSKLETDPDSEAHSADTPEEVLKQAEQAVSTLTGRIARVEQSIATGMDAALAALSSYGGDFVPPRPSLATVDTDRGLIGRPGDDSDGITWVPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VID5</accession>
    <name>A0A0Q8VID5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavin reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893065.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57030">
        <property type="protein sequence ID" value="KRC57030"/>
        <property type="gene ID" value="ASE19_02610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1681849at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="21"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="171" mass="18454" checksum="C666DDAE80060CFF" modified="2016-01-20" version="1">MTIHTTHPFADDRPDPVRRLRGRLAGTVTLWTSGTGAGRAGLTVTSWMVAMGPEARLLALLDPDSDLLEALRDNGRAVVQLLSWPDRQLAEAFAGTAPAPGGPFRQAAFVDTDHGPRLASASSWAAVRLEDEREVGWSVEVTVVVEHAEIGDDDDPLLHRRGRFQRLGSGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJJ2</accession>
    <name>A0A0Q8VJJ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23410</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57710">
        <property type="protein sequence ID" value="KRC57710"/>
        <property type="gene ID" value="ASE19_23410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2045632at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="316" mass="32880" checksum="D86DD178EA757F1F" modified="2016-01-20" version="1">MMSHPDDDLDGLDGALGRLLGDAVADVSPNDRLGEIRRRTLQQPRRAPRRWPLVVLGAGVTTAAVVGAVALAGHLGLPGADEPPVASGPRQAAVATYFVGETAAGPRLFREFQAISPNDEEAPLALAALRLLESDAGPLDPDYTTDWSDGAFTAVTVTDSRIEVRLADRVDPLPADPAAQQAVFTVQAALGSSLPVAFRTPEGTLRVDGQESVGRDNALLAPVNVTDPVEGHTVDDLLTVRGVVSPVGPAPTTVAWELHSPGDAVVVASGSTPVVTRAWEQTTSIADVPPGTYELRVSVPMPGAAPATDTRTLTVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK81</accession>
    <name>A0A0Q8VK81_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_08240</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895642.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54210">
        <property type="protein sequence ID" value="KRC54210"/>
        <property type="gene ID" value="ASE19_08240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="6"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="152"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="221" mass="23642" checksum="32B3E2AF756C2C3F" modified="2016-01-20" version="1">MTEPIRVFLVDDQELVRAGFRMLIDSQPDLTVVGEAGDGGEALEQLAVTRCDVVLMDVRMPRVDGVEATRLLTARDDAPQVVVLTTFDLDEYAFAAIRAGAAAFLLKDATPAVLLGAIRTVHAGDSVVAPSTTRRLLEHFASALPAAPTGAPDDRLALLTDRERETLVLVGRGLSNGEIAEEFVVAEATVKTHVSRLLAKTASRDRVQLVVLAYETGLVSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKA6</accession>
    <name>A0A0Q8VKA6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23720</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893972.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57766">
        <property type="protein sequence ID" value="KRC57766"/>
        <property type="gene ID" value="ASE19_23720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="160"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="184"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="189"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="324" mass="33892" checksum="44714D989904E3BB" modified="2016-01-20" version="1">MSEYDARLTDRVRTRGVLGPDDAARLLLPVAQSLADLHAAGTAHGAVSPAAVRIASDGSASLVDASDVRPDPAYVAPDPSAGLRADPCADDVWALAAVLEFVTTGGEPGSGGVRDTGWLAPLTELALVVDPRQRPTMADMAAYLQAQVPAPEPARRPSPVVLGVVGAAVIVVLGLVGAALLFTGSDDDPDPAAKPDTPSRRTSDGPRGSEEPVDDPAATASADTVSARELEDFARSYVATASRDPQRGLRLLTPDYQAASPRYREVWAAIDSPVILSITPDPQAMTVSYTYRYALPGGVRRTEDITLRLVQRDGRLLISGASAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKY9</accession>
    <name>A0A0Q8VKY9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Acetolactate synthase small subunit</fullName>
            <shortName evidence="8">AHAS</shortName>
            <shortName evidence="8">ALS</shortName>
            <ecNumber evidence="8">2.2.1.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Acetohydroxy-acid synthase small subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_05585</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the conversion of 2 pyruvate molecules into acetolactate in the first common step of the biosynthetic pathway of the branched-amino acids such as leucine, isoleucine, and valine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>H(+) + 2 pyruvate = (2S)-2-acetolactate + CO2</text>
            <dbReference type="Rhea" id="RHEA:25249"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58476"/>
            <dbReference type="EC" id="2.2.1.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 1/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 8">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 8">Dimer of large and small chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 8">Belongs to the acetolactate synthase small subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.6" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894156.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54925">
        <property type="protein sequence ID" value="KRC54925"/>
        <property type="gene ID" value="ASE19_05585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1500398at2"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00055"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003984">
        <property type="term" value="F:acetolactate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990610">
        <property type="term" value="F:acetolactate synthase regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04878">
        <property type="entry name" value="ACT_AHAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004789">
        <property type="entry name" value="Acetalactate_synth_ssu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027271">
        <property type="entry name" value="Acetolactate_synth/TF_NikR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019455">
        <property type="entry name" value="Acetolactate_synth_ssu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039557">
        <property type="entry name" value="AHAS_ACT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30239">
        <property type="entry name" value="PTHR30239"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10369">
        <property type="entry name" value="ALS_ss_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00119">
        <property type="entry name" value="acolac_sm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACT" evidence="9">
        <location>
            <begin position="5"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU368092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC54925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="179" mass="19299" checksum="5FFB5E048B2C9110" modified="2016-01-20" version="1">MAKHTLSVLVEDKPGVLARISALFSRRGFNIESLAVGPTEHEEISRMTIVVNVDSSPLEQVTKQLNKLVEVIKIVELDPTASVTRELILVKVGATAENRSQVLDIVQLFRAKVIDVAGDAITMQVVGNADKINDFLRVLEPFGIRELVQSGMVAIGRGSRSISERGKPVAVPVPPAANA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL96</accession>
    <name>A0A0Q8VL96_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06055</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894069.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55005">
        <property type="protein sequence ID" value="KRC55005"/>
        <property type="gene ID" value="ASE19_06055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2084202at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="19121" checksum="57A108E2447BE19B" modified="2016-01-20" version="1">MNHLGQLHHVDRVDPSVLDDDPFWSVVRRRHPAATVVLVPPAVTPPDDAGPTPDELRAIAGSAHAAWRLVAPLVASVDDDGAPTVSWRGRAEGHALVLQKALRGLGSAGGTELLRAVAAVLGREGWLLRPSARDGVAVLDGRGEGVEVRAEAGAGATVLTFATPVLAVGAAARSALREEVRSWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLK0</accession>
    <name>A0A0Q8VLK0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06260</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894450.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55040">
        <property type="protein sequence ID" value="KRC55040"/>
        <property type="gene ID" value="ASE19_06260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1900922at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="2"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="115" mass="12792" checksum="F726CE0CFDCE202D" modified="2016-01-20" version="1">MTLDLFAGLPVTDHDRAVDWYTRLLGEPPSFLPNDVEAVWELADHRYVFTEVLAEHAGHARTTLFVDDLETWIQAIADRGIEPASDETYDNGVRKVTYRDPDGNEIGFGGESAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLX0</accession>
    <name>A0A0Q8VLX0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Thioredoxin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_08185</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895471.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54039">
        <property type="protein sequence ID" value="KRC54039"/>
        <property type="gene ID" value="ASE19_08185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1617952at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016209">
        <property type="term" value="F:antioxidant activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360165" description="Thioredoxin domain-containing protein" evidence="3">
        <location>
            <begin position="25"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="domain" description="Thioredoxin" evidence="4">
        <location>
            <begin position="59"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="209" mass="21563" checksum="44F1110538C601B8" modified="2016-01-20" version="1">MRLPAAAVALVAAGVLMTGCDSVAPSFACKVEADAPDLVKDRVAAGIADCDPASWSVGDGAAAQLPDLDLACLGGEKGAALDQVHGPAMINFWASNCGPCRKEMPALQDFYEKYGDQVTVLGVNYLDTYPGAAIDLAHQLGVTYPSLADACGDLQETDAELGIGLPFFLFVSEDGTVSKPRTGGVESVQEVVDLVEDNLGIDVTAKVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMA1</accession>
    <name>A0A0Q8VMA1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PPM-type phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01895</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56611">
        <property type="protein sequence ID" value="KRC56611"/>
        <property type="gene ID" value="ASE19_01895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07228">
        <property type="entry name" value="SpoIIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="242"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="domain" description="PPM-type phosphatase" evidence="2">
        <location>
            <begin position="311"/>
            <end position="524"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="529" mass="56471" checksum="BFCC7F77F57C499E" modified="2016-01-20" version="1">MSVTIILIGLVATALGVTLAVRTDRSNERRLLEVQTNQAATVLGIATNSFQEPMASALDVAASVLPERRRKVFAERFTRNVGPDKLFQSGALWTRDAAGLRRIAAVGGRSRASVTGAVTRGLLRRAYASGTMAVEWVHDGRQTRIVFALADAEAGFAVSTERVLPATRRAPVDTDSGFAGLDYSVYLGESTSEEDLALTDVDPSELPLEGLTKSVSIPFGDNALTFTTRPREHLGSSLSQQLPWLLGFGIPILTALALVLARQLLRARRRAESDTRTITGLYERVDTLYGEQRELSVRLQNALLPATIPSLPGYEVAAKYVAGAQGIDIGGDWYSVVGVGEDGFAFVVGDVSGHGIDAVAEMARARFTVRAYLVDGDSPQDALEKCSRQFDIALDGHMVTVVAGVGNRRTGELVLASAGHPSPLLVSPDGAAQFVPIRAGRPLGAGADVYEPTAVTMPPGATVLCYTDGLIERRTEDIDAGFARLAQVASGPTSGPLEQFLDHVLENTRAPEHNDDIAMLALRRDARLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMZ1</accession>
    <name>A0A0Q8VMZ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03510</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892900.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56883">
        <property type="protein sequence ID" value="KRC56883"/>
        <property type="gene ID" value="ASE19_03510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1090356at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026555">
        <property type="entry name" value="NSL3/Tex30"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13136">
        <property type="entry name" value="PTHR13136"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="22648" checksum="2A77A0305CB77298" modified="2016-01-20" version="1">MTDERLVPTEYGEGRLVVRRARKPLATLLLSHGAGGGIEARDLAALAAALPGQGITVALFEQPWRRAGKKVASAPPTLDVGLRAAAGSLRTRSPLVVGGRSAGARSAARTALELDACGCLALSFPLHPPGKPERSRLDELAGAGVPTLVVQGERDPFGRPEEFPDPLPGRTDLAVVPGADHGLAVPKRGPVSEDEAMAIVVESTLEWIVREIVGNGSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN20</accession>
    <name>A0A0Q8VN20_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NAD-dependent epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03685</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892932.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56915">
        <property type="protein sequence ID" value="KRC56915"/>
        <property type="gene ID" value="ASE19_03685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="284" mass="29508" checksum="D6DB6B8486CA73BA" modified="2016-01-20" version="1">MGTYAVTGSASGMGAAVVERLVADGHRVIGVDIKAADVVADLSTPAGRRRAAGEVLAQAGGVLDGAVLAAGLGPAPGRDRARLITEVNVLGVVELLEAWRPALAAADRAKVVVFASNSTTTVPLVPRRAVRAMLDGDVEKAVGTLRLLGKAAPTFAYAASKIAVSHWVRRQAVTPAWAGAGIRLNALAPGAIMTPLLEQQLATPAEARRIRAFPVPVGGFGDAGQLAAWVVFMLSDAADFLCGSVVFVDGGSDAWFRATDWPRPVPARRVGSYVARMKAFRAQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNA5</accession>
    <name>A0A0Q8VNA5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6 7">50S ribosomal protein L20</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rplT</name>
        <name evidence="8" type="ORF">ASE19_23260</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6 7">Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the bacterial ribosomal protein bL20 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892513.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58974">
        <property type="protein sequence ID" value="KRC58974"/>
        <property type="gene ID" value="ASE19_23260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1932144at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000027">
        <property type="term" value="P:ribosomal large subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07026">
        <property type="entry name" value="Ribosomal_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1900.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00382">
        <property type="entry name" value="Ribosomal_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005813">
        <property type="entry name" value="Ribosomal_L20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035566">
        <property type="entry name" value="Ribosomal_protein_L20_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10986">
        <property type="entry name" value="PTHR10986"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00453">
        <property type="entry name" value="Ribosomal_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00062">
        <property type="entry name" value="RIBOSOMALL20"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74731">
        <property type="entry name" value="SSF74731"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01032">
        <property type="entry name" value="rplT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00937">
        <property type="entry name" value="RIBOSOMAL_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6 7" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC58974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="128" mass="14428" checksum="A7B23E90136E5AC5" modified="2016-01-20" version="1">MARVKRAVNAQKKRRTTLERAAGYRGQRSRLYRKAKEQVTHSLVYSYNDRKKNKGNFRRLWIQRINAAARAEGMTYNRFIQGLNLAGIEVDRKILADLAVNEPAAFSALVAQAKAALPEDVNAPKVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP55</accession>
    <name>A0A0Q8VP55_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MaoC_dehydrat_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23165</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892527.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58959">
        <property type="protein sequence ID" value="KRC58959"/>
        <property type="gene ID" value="ASE19_23165"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039569">
        <property type="entry name" value="MaoC-like_dehydrat_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13452">
        <property type="entry name" value="MaoC_dehydrat_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC_dehydrat_N" evidence="1">
        <location>
            <begin position="38"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="174" mass="19157" checksum="1526069C59C1A117" modified="2016-01-20" version="1">MSAPVEPQQLVDPAVHEKVMAEAERIKAWGEAAERYARDEVNQPTINNWLEAMGVDNPRFKAGEAPPSMAQVWTMYGLGGRPSEDDPLHAMMRALTDAGFTAVLGTNCEQAYDRYLTVGEQLRVTTALDSVVGPKATGMGVGYFVTSRNTWYVGDERVATMLFRVLKFIPKGDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPX3</accession>
    <name>A0A0Q8VPX3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_00115</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AfsR/DnrI/RedD regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896856.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59484">
        <property type="protein sequence ID" value="KRC59484"/>
        <property type="gene ID" value="ASE19_00115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041664">
        <property type="entry name" value="AAA_16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005158">
        <property type="entry name" value="BTAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13191">
        <property type="entry name" value="AAA_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03704">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01043">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="19"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="BTAD" evidence="4">
        <location>
            <begin position="94"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="AAA" evidence="2">
        <location>
            <begin position="277"/>
            <end position="577"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM01043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="999" mass="105051" checksum="77AA33E05C4A672A" modified="2016-01-20" version="1">MVSALAVRVLGELTVDGFDTAVLDRKARGLLLLLALACGRPVPVDAIVEGLWGDRPPGSPADQVAVLASRVRRLLGRERVERTDQGYRLHADWTDLTELDAVVHEAERRLAAGETGAAASAARAAVALLRGPVPEVRAEAAWAAAEHATATRLVQRARRVAASGLLAAGEWRDALELASADLVADPLDEQAARTVMRAHVAGGRPAQALAVHADLRATLADELGTDPAEETAVLHTAILRGDLPVVRPSVRVPTLVGRDSQFAHLNSLVGRAAAEHAPRVALVAGEAGIGKTTLLMSWAAARRAAGDRVLVGTCGPLDRAAPLDVVLSALAGHVEDHGVLVGSTDPAGSVDPALGPSVLYAEVTRALARIASDRPLVLVVDDAHLAGPTLAHWLAYLRRRPVPVVVVLGARPDEGAPLSATDHVGLGPLDRAHVAALVGERRADELHARSGGHPLFLAELASVPSGDLPESLVAAVTGRCDDLGTAGELVRTAAVLGGDLDIDLLAGVLGRSTLEVLTDAERAVRSGLLVETTGRLRFRHDLVRTALVSGTTTGRAALLHREAGRALARRRDADPATVAEHARIGGDHDLAARSLRTAAARAAERFDHATAEELLDQSLALTPDDATLLARARVRIRRRRYRDAEADALAAGGAGALRWEAAAWAAYFDRRFDDAASYADDGALAADDATSRTRCLVASGRILHARGELGRAGERLDAALAGASGTDRLEAAAWRGVLHAHRSEVDDALALLRPATRPGVGVAHTPASLHALLFTGHTLAVAGRAREALACFADYTAEVERRDVPRFAGRGVNFSGWVLRNLGDVAAGVDAHQQAADEAVAGVVIPEVLVAALEDLAEERVRAGDPDAADVLLERARAALVGDLVFGWRLTMKLQLLQVQVHLLREQPEPALAVATALAADAARAGVPRYDACARLLVHRALHALGEPVDPAAARRDLAEVERAVGIEAWWWAASTGAALGDERWLARSELLAAELRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPZ7</accession>
    <name>A0A0Q8VPZ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00055</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59476">
        <property type="protein sequence ID" value="KRC59476"/>
        <property type="gene ID" value="ASE19_00055"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001434">
        <property type="entry name" value="DUF11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01345">
        <property type="entry name" value="DUF11"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01451">
        <property type="entry name" value="B_ant_repeat"/>
        <property type="match status" value="12"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF11" evidence="2">
        <location>
            <begin position="226"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="2">
        <location>
            <begin position="362"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="2">
        <location>
            <begin position="495"/>
            <end position="584"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="2">
        <location>
            <begin position="629"/>
            <end position="738"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="2">
        <location>
            <begin position="757"/>
            <end position="872"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="2">
        <location>
            <begin position="891"/>
            <end position="1007"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="2">
        <location>
            <begin position="1017"/>
            <end position="1131"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="2">
        <location>
            <begin position="1145"/>
            <end position="1260"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="2">
        <location>
            <begin position="1277"/>
            <end position="1359"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="2">
        <location>
            <begin position="1399"/>
            <end position="1478"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="2">
        <location>
            <begin position="1521"/>
            <end position="1601"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="2">
        <location>
            <begin position="1643"/>
            <end position="1759"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="525"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1752"/>
            <end position="1771"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="538"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1752"/>
            <end position="1768"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="2215" mass="220141" checksum="D559F1E3C13C4D0B" modified="2016-01-20" version="1">MCTNWTNGSIQGSNSHYREDDVVPQRAVITIPADSAVHTLYFNFQDRKGSVHAYDSLGTWNKTVTGGNPCQGLAAGLCAGTPSTWLMAEDSTNVPPSAAGISQMPKNHDLPDADRQWTMYGGVLVGDTVGPHSSPAAGDDLVSVSVSFRNPTPGTASTAVLLFGGHLAVGGPNTHERAWGENLGASSVSGGPYAFKLDKIDNTTIGATANSIQAGSTAPLAPAAFAITKTASTTTATTGQQVTYTITVKNTGGLAGSTTFTDDFADSITPSAVTLNPSSAGSCSPATVSGNKVLSCTTMSIPAGGQQTFTYTANMPDSFTGASGTDGCAAGRYAVKNTATLAAGAGSASATVCVSAASQFTITKAVPSTTVNAGAPVTYTVTVKNTGTAAGSTGFTDNFDDRLSPSTATSNPAGNNCVPTTSGDRVFTCTTKVLAAGESQTFTYTATMPATFSGVPGTGGCGAGRYPVGNTATLSGTGGASSTVTMCVLAAPTFKVTKTADDVTADPGQSITYTIVVENTGNAAGSTSWKDDFDDRLSPSTATSSPTGNDCTATAPGGNKLFDCTTGTIPAGGQQKFVYTATMPSSFSAGSGTGGCPTGAYPLPNSVVLANQATSSVTVCVGALANFTIAKSVDNATPVPGGTVTYTVVVKNTGAAAGSTSFTDDYDDRMGITLPAGASCTVGTGTAAGTFTCQTGTVAAGGQVTFTYTGVVPATFGPTSGTDGCASGTYPIANTATLASGPSAGARLCVAASPAYAINKSVDDATGVPGQVVTYTITVKNTGTAAGTTGFVDDFDDRVTPAGIVIAPSTGSCSITSGSNRTLSCSTGVIPAGSQQVFTYSVTLPPAYAGATGGGTCAPGTYRVANSATLTGSTTPAAVDVCVTAAPSFLVAKSVDKTSPKPGDTVTYTIKVTNNGTAAGSTTFVDDYDNRLSPSTAVSLPAGNNCSPSAGTFSCTTGTISSLGQQTFTYTATIPSTFSGSGGDGTCAAGTYRIRNDVTLANNATDAVVLCVAAKPDFVVDKTVKTDGHVDPGDTVEYTIKVTNNGDAAGSTTVVDDYDNRLDPTQPTGCTKASGKLTCTTGTIAAGGSESFVYTAVLPTSFTGTPGTGTCQPGEFQVANSVTVTGTTAADAVDVCVPAAPAFDVTKTASSTRVDAGGAVTYTIKVKNTGTAPGSTQAVDNFDDRLDPPTATSVPAGNDCAPTTVGGDEQFRCPTAVLDPGQSQTFTYTVLMPASFAAGAATGSCPNGSFAVVNSVQVTGDSDAVTVCVAAAPAFTVTKTASSPVASPGGSVDYVITVRNTGTAAGSTTFTDDAEATIGGAPDGCALVAGHHLDCTTGVLAAGASAEFRYTATVPATYTGDPDATACNPPAYPVRNTATLANGTQARTVVCVGAAPAFSVTKAVDDALADPGQTVRYTITVTNNGTASGSTTIVDDYDNRLDPSVPAGCDKTGGTLVCATGVLAAGASKTFEYDAKLPATYSGDSGVAPCGPGEYGVVNKVRIGGNEVASRTVCVPAAPKLGVTKTVSDQTPDPGETVTYTITVGNTGSVAGSTSFTDDFDDRLSPSTPDGCTKADGKLSCTTGSIQPGATQVFTYTATMPNSFTGAAGGGGCPGDAYPVGNSVVITGGGHAEVTACITARPDVVLTKASSVDVRPNGDQVLTYTLTWTNNGAAEANGTVLTDALPAGTGFVSCTGGCSVGGSPATATWQVGTIAPRGGTGSVTLVVKVTNNALCTVPNQARMQVTPTVQVSSNQVSDNVTPQADPSSGKANGEAIGLEVRSSGLLTLITGLLQAIVRDKVTADFSNAVSSQSGVGGPTTDSDSVLALKLPANGSVLSAGVLTTTSASTVTAAPAEARQTTTAEVAGVCLVPVAGVCTVETGTVRAVASTTANGGYATASSTGSAIQSLKVLGLDTPVNLDQTTTIPLNAAVFGKNSYVAINERTSATGLKQGKYYADQGVTMIHVKITGLLLGVQAVEIKVASATAHSEFLQTPLCGNQPNRSVSGHAFNARLFTGPLLADLTLGYTQIAPLGGAETEHIAGVALPNNANIVGAQVADSASTGSLNSSGSTARSWAEIAGDGTRPVCVLRTGVTCVVSATVIRSEARSNAGPTGSTSTDTGTTLVGLNLLGVIPIQGTPAPNTTLALPGIGFIVLNEQFCDGGGAASHSCAGTPHSGITVRAVRVVVTLANNLLGLTPGVELVVGEAHADSSFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQH8</accession>
    <name>A0A0Q8VQH8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_00165</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59494">
        <property type="protein sequence ID" value="KRC59494"/>
        <property type="gene ID" value="ASE19_00165"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04852">
        <property type="entry name" value="Peptidases_S8_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003137">
        <property type="entry name" value="PA_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015500">
        <property type="entry name" value="Peptidase_S8_subtilisin-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034197">
        <property type="entry name" value="Peptidases_S8_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010259">
        <property type="entry name" value="S8pro/Inhibitor_I9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045051">
        <property type="entry name" value="SBT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041469">
        <property type="entry name" value="Subtilisin-like_FN3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10795">
        <property type="entry name" value="PTHR10795"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17766">
        <property type="entry name" value="fn3_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05922">
        <property type="entry name" value="Inhibitor_I9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02225">
        <property type="entry name" value="PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00723">
        <property type="entry name" value="SUBTILISIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="SSF52743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0720">Serine protease</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360271" evidence="5">
        <location>
            <begin position="29"/>
            <end position="979"/>
        </location>
    </feature>
    <feature type="domain" description="Inhibitor I9" evidence="8">
        <location>
            <begin position="48"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S8" evidence="6">
        <location>
            <begin position="177"/>
            <end position="635"/>
        </location>
    </feature>
    <feature type="domain" description="PA" evidence="7">
        <location>
            <begin position="434"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="domain" description="fn3_6" evidence="9">
        <location>
            <begin position="681"/>
            <end position="773"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF05922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF17766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC59494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="979" mass="99225" checksum="D1957AC74AB0BED6" modified="2016-01-20" version="1">MSLRAALVGVVATTALGLAPVSAQPTAAAPAPVADASPAGARPYTAGRYIVTFADEPVASYTGYAKGFAATQPARGRKVNVRSAAAKAWSRHLTTRHDAVLAKVGATKVYDYTVTNNAVAAQLSAKQANQLAKTPGVLALSRDQLRHPDTSYSPEFLGLTAPGGLWSRFSGGQSKAGAGLVVGVLDTGIWPESASFAGGTGIPVPSTWHGTCVSGEQFDKNLACNDKLVGARYYYAAFGKKLIAKSDYLSPRDGDGHGSHTASTAAGRANVPASIDGRSLGSVSGMAPGAKVAAYKVCWSGKGVPDGCFNSDSVAAINQAVADGVDVINYSIGGTSESGVLDPVEQAFRAASNAGVFVANSAGNSGPGASTLDHPSPWLTTVAAATFRRAFNVVELGNGARYVGASTTGTLPTPTRIVTSASVKLAGATVVDANRCIEGTLDPAKAVGKIVVCDRGVNDRIAKGFEVKRAGGVGLVLANVSPNSINGDYHPIPAVHVVDTDGAAIKAYIAANGAAATARIVPLTAGELAAAPQVPEIAEFSSRGPSTTTGGDILKPDIAAPGVDVLAAVAPPFNHGRSFDFISGTSMASPHIAGIGALIKARHPSWLPSEIKSAIMTSARDTVSSANDPFAQGAGFVVPNDADDPGLVYPTTATDYRRYLVGLGVTFAPPNDTLTPLSAPDLNQASIAVGSVPGVASVTRTVKNVGSTEATYTADANVPGFDVTVTPSQLTLAPGATQTFTVTFARTDAAFDAFTTGALTWTDGVHDVRSPIALRPVGVAAPHEVHADASATGSQEFDVTPGFTGALSSTVSGLTGVTPTADSVATSAFDAENPVADAGTKVYHVVVPAGTRAARFSLDANDDTADLDLYAYQDGELVALSASSAADEEVTMLDPAAGTYDVYVNGFSTPGGSTGYGLANFVVDAASAGNASVAPDPASVTQGVDTTLTASWTGLDPAKRYFGVINYAGTTSFTYLSVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQN0</accession>
    <name>A0A0Q8VQN0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminoacyl-tRNA deacylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02455</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892723.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56705">
        <property type="protein sequence ID" value="KRC56705"/>
        <property type="gene ID" value="ASE19_02455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1935578at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.960.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036754">
        <property type="entry name" value="YbaK/aa-tRNA-synt-asso_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007214">
        <property type="entry name" value="YbaK/aa-tRNA-synth-assoc-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04073">
        <property type="entry name" value="tRNA_edit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55826">
        <property type="entry name" value="SSF55826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA_edit" evidence="1">
        <location>
            <begin position="30"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="157" mass="16514" checksum="1D7F33FA24875646" modified="2016-01-20" version="1">MSAEHPSIARFRAEHELRGGTGEIVILPDSVHTAALAAEALGCEVGAIANSLLFDADGTPVLILTSGDHRVDTALTSERIGRGTLRRASPELVREHTGQVIGGVSPIGHPAPVPTYLDTWLQRHDVVWAAAGHPAAVFSTSYDELLALTGATPLQVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQY6</accession>
    <name>A0A0Q8VQY6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">30S ribosomal protein S15</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpsO</name>
        <name evidence="7" type="ORF">ASE19_02910</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="3 6">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the universal ribosomal protein uS15 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892802.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56784">
        <property type="protein sequence ID" value="KRC56784"/>
        <property type="gene ID" value="ASE19_02910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1990141at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00353">
        <property type="entry name" value="Ribosomal_S15p_S13e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01343_B">
        <property type="entry name" value="Ribosomal_S15_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000589">
        <property type="entry name" value="Ribosomal_S15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005290">
        <property type="entry name" value="Ribosomal_S15_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009068">
        <property type="entry name" value="S15_NS1_RNA-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23321">
        <property type="entry name" value="PTHR23321"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00312">
        <property type="entry name" value="Ribosomal_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01387">
        <property type="entry name" value="Ribosomal_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47060">
        <property type="entry name" value="SSF47060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00952">
        <property type="entry name" value="S15_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00362">
        <property type="entry name" value="RIBOSOMAL_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 6" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="91" mass="10575" checksum="BEE2144112CE260A" modified="2016-01-20" version="1">MAVGTDAETKKQIIAEYATTEGDTGSPEVQIALLSHRISHLTEHLKKHKHDHHSRRGLLLLVGQRRRLLNYLKKTEIERYRSIVERLGLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR50</accession>
    <name>A0A0Q8VR50_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03745</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892942.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56925">
        <property type="protein sequence ID" value="KRC56925"/>
        <property type="gene ID" value="ASE19_03745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1411552at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025568">
        <property type="entry name" value="DUF4334"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025951">
        <property type="entry name" value="GXWXG_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14232">
        <property type="entry name" value="DUF4334"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14231">
        <property type="entry name" value="GXWXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GXWXG" evidence="1">
        <location>
            <begin position="23"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4334" evidence="2">
        <location>
            <begin position="123"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="178" mass="19779" checksum="BCF542642D041258" modified="2016-01-20" version="1">MTVIPVDRLAELEPACRLEDALAFFDTLPAVRAEEITGRWHGRELGTGHPMDGLLEASGWYGKQFDSVDEVHPLLFKAPSGKIVSVDPRRIPFGIVDKIPEGVVARGRAVMGAALPALRTGKPRARLRNVEYRGVVTAGMSYDHLPIIDLFRRVDEQTLLGCMDLRDAPPYFFVLVRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR89</accession>
    <name>A0A0Q8VR89_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896552.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59787">
        <property type="protein sequence ID" value="KRC59787"/>
        <property type="gene ID" value="ASE19_01855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="25424at85009"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="131" mass="14944" checksum="4B736C9A10CDC8C5" modified="2016-01-20" version="1">MSDYRWEPRRKVWTRPDRKGPRRAVLSANLAALRDPAPVESHPLATTATRAKALDQAIEEAVLSGSVVLQKSERSAILSQKKPITHWWHIALCIFTAGLWLTPYLIIAVTRGDIRYRLEVDQWGHVWPQLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRL2</accession>
    <name>A0A0Q8VRL2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896596.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59743">
        <property type="protein sequence ID" value="KRC59743"/>
        <property type="gene ID" value="ASE19_01610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1509304at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="176"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="202"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="245" mass="27594" checksum="B4CB1C50553806C1" modified="2016-01-20" version="1">MYDPATILGAIDDHTWPIMIGFTLAMVLQNVAMVTAVVMTRREGWISIPLPCTFLWFAHDLGVVVRFDTWFHTYDHWFLKLFWVGLVTAFLLELVFMAQALRVGRKEYLPNGTQQQWAALLFGGAALFVLAWEYQKTIWDDPLYQALAATTLYALPMAVVPLVLRRRSAISQSPVIYACFAAMVPLWWGVTAGAYGDAFRTWQYLGSGVVAFTCLTAVAVWIHRLRSTGEVNEPRLDEVAALAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTI3</accession>
    <name>A0A0Q8VTI3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histidine triad (HIT) protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23420</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893918.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57712">
        <property type="protein sequence ID" value="KRC57712"/>
        <property type="gene ID" value="ASE19_23420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1934382at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.428.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001310">
        <property type="entry name" value="Histidine_triad_HIT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011146">
        <property type="entry name" value="HIT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036265">
        <property type="entry name" value="HIT-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23089">
        <property type="entry name" value="PTHR23089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01230">
        <property type="entry name" value="HIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00332">
        <property type="entry name" value="HISTRIAD"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54197">
        <property type="entry name" value="SSF54197"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51084">
        <property type="entry name" value="HIT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HIT" evidence="2">
        <location>
            <begin position="7"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Histidine triad motif" evidence="1">
        <location>
            <begin position="98"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="114" mass="12153" checksum="4DD4FD854D150A26" modified="2016-01-20" version="1">MTDPDCLFCKIVAGEIPAEIVHEGERTLAFRDINPQAPLHVLVIPRDHEPNAAATAAADAATFAEIPATARAVAAAEGYDDYRLVFNTGAGAQQTVFHTHCHVIAGRPLNWPPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTJ6</accession>
    <name>A0A0Q8VTJ6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_22940</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892565.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58921">
        <property type="protein sequence ID" value="KRC58921"/>
        <property type="gene ID" value="ASE19_22940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1570162at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025996">
        <property type="entry name" value="TetR_C_WHG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13305">
        <property type="entry name" value="TetR_C_33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="5">
        <location>
            <begin position="12"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC58921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="202" mass="21786" checksum="959DCF91DB4BC3A1" modified="2016-01-20" version="1">MTIDTTRGRRGRLDQEAVLQAAEALVDRDGYDALTMTSLAAELEARVSSLYNHVANLEDLRALVQVRAMRMLGEHVRAAAMGHAGTDGLRALSRELRTFARTHPQRYAALTRPPIDREGFYAAALDAIEALAVMVRSAGLPEERLLQTAMALFASLHGFVSLEVAGYFGDLSGTSAALLDLDEVYEQVIDGAVSAAVLEATL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUD5</accession>
    <name>A0A0Q8VUD5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MDMPI_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02575</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892745.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56727">
        <property type="protein sequence ID" value="KRC56727"/>
        <property type="gene ID" value="ASE19_02575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1760896at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024344">
        <property type="entry name" value="MDMPI_metal-binding"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11716">
        <property type="entry name" value="MDMPI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MDMPI_N" evidence="1">
        <location>
            <begin position="15"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="203" mass="20959" checksum="5EE0C89CA8F79B70" modified="2016-01-20" version="1">MSDDWAGACAAFAEGAAWFVATVGRVGDRWTRPGLGDWDVRALVGHTSRALLTVEEYAARPATDVVATSAAAYFRAARAFANGPDVADRGRAAGAALGEDPASEVAAIAQRVTALLPTLVPDQLVATIVGGMHLVDYLPTRTFELAVHTADLAAALDEPRVVPPLAAAEALAVVTALAVDEGTAGDLLLTVTGRPVTERFSVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUL6</accession>
    <name>A0A0Q8VUL6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">tRNA threonylcarbamoyladenosine biosynthesis protein TsaE</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaE</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_00340</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaD and TsaB. TsaE seems to play an indirect role in the t(6)A biosynthesis pathway, possibly in regulating the core enzymatic function of TsaD.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TsaE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896817.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59523">
        <property type="protein sequence ID" value="KRC59523"/>
        <property type="gene ID" value="ASE19_00340"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003442">
        <property type="entry name" value="T6A_TsaE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02367">
        <property type="entry name" value="TsaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00150">
        <property type="entry name" value="T6A_YjeE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="7">
        <location>
            <begin position="3"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00032441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="307" mass="32821" checksum="292A0796FC44ADF5" modified="2016-01-20" version="1">MTTEIIAIGPERAADVLAVVRAAFAARPVLDPPADALAETEETIAAMLAPGGGLLVLDEGRVVGTVVLDPVDDAIFLRRFGVDPAAQGRGVAKALVRAALAEASRRPEARRAVILAREELPRTMGFWRDMGFVETGREAPYVEMERPVPYVAEVPSAEEMRELGRRLAGLLRAGDVLVLTGELGAGKTTFTQGLGEGLGVRGGITSPTFVIARVHPSLGEGPELVHVDAYRLDGRAELDDLDLDTELDEAVTVVEWGSGLAESLSDDRLEIRIARATASTDVDPEADPRVVEIDPVGRRWLGIDLRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVY7</accession>
    <name>A0A0Q8VVY7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01490</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59721">
        <property type="protein sequence ID" value="KRC59721"/>
        <property type="gene ID" value="ASE19_01490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1638316at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="136" mass="15031" checksum="76588DE548BF846B" modified="2016-01-20" version="1">MPYAGTAEDGRKFFLSDELFDIDAADGEPSGFVGLFLWNADGSFDEVRVDRVDRAPGLPPGQASSAGADDLVAERLRQLGKYQLEPISVEPFLAVVDGVTFGWEVDQYDDGTYFIGIRPGDFIVYHEPWDGLEYDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWY2</accession>
    <name>A0A0Q8VWY2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_22985</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58928">
        <property type="protein sequence ID" value="KRC58928"/>
        <property type="gene ID" value="ASE19_22985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360464" description="MlaD domain-containing protein" evidence="2">
        <location>
            <begin position="31"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="3">
        <location>
            <begin position="46"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="369"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="369"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC58928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="412" mass="42611" checksum="95D3B31E332F8624" modified="2016-01-20" version="1">MRTMTMRTTTARAALVGVLALGVGATSACGTTMRDLPIPGTGVSGDTIEVKAQFDEALNLAIGAPVKVNGVDMGKVKDVTVDDFIAEATLTLKSDAELHEGAHARLRYTTPLGELFVDVTNPATGNLLGDNATLELKDTETAPTVEDALAQASLLINGGGLEQLQTVTEELNTALNGNEGDYRTLLDRASVFLTQANSTSQSIDAVLTSLNSLSKTLNSRKDTINRAVREIAPAAKVLREKTPQFTELLAEVEKFTGAANETVTATRSQLLTLLKEIEPVLAEFAKNNGTFDTSLQRIIKASSAADNIIATDYLNIKLELHLDGIDAGGLVQGTLGGILKLLGLDPNAAGIGGLLDNLGLGNLLGGRTTTTKPATSGKPKPSGTSSGSGGSHTGSDPLGLNALLSGLLGGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXM7</accession>
    <name>A0A0Q8VXM7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00210</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896839.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59501">
        <property type="protein sequence ID" value="KRC59501"/>
        <property type="gene ID" value="ASE19_00210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="442822at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="888"/>
            <end position="910"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="827"/>
            <end position="875"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="920" mass="97225" checksum="A453C8375D5FE85A" modified="2016-01-20" version="1">MKNTATGGSASTPFRWSRIALAVVGLALAGTGLTGVSAPAGASGKVDDGSDWGSQGTLSSDSAITVRWDNGGNPASSIVPRDGGQRIPHTKDPDTGALRTYDDIKASVTQPYVDYFKDLSVTVSQTQDLVNQSVSIDISGVKADRVTAGALESRASFQVFQCWGGLTDTGKPDPGAANPDPATCQFGAGGPDVTVGRSREERRILDDTLAVGGDWQEHYNKGWVPFTAITGRSVDGEEGKNPFFDRNMTNEFSNISVTSAGTAQRQFEMQTTVESYGLGCGKRSDAASTGSCWLVVVPRVVDVLPSTGAISPSVWAQRLQVKLDFRKISVGCPGGTSRTLIGGSEMLTNAAESWVPGVCGARDIALGYSQLGDPVGRSQYVAGQNAAILTSERPDKAAVPVPVALAAPTVAYQLTYQPACAQNAPTTDEGATQCGYDDLAALRADHARAGTPVRDLKLDARLVAKLLTQSYYLSILDDSVRLPLPAWGTRKRPKFLLDDPEFKRLNPQLRHMASNAGDRTDHLILEAMRSDAATRVWQWLLSDPDARAFLNGCPDPDGLTVNPFYSTRTYVGCEDDKDALERQADADREATKKSSAYVDGAVSYPPAGSPYPMPTWQEIPPILGAGGEVTKSAYTLTDLMPRVDSMPASGREVGRGHIPVNSLLGWCPTNEDETCQPAPGKYKADKKRQNPAELNLLAITDTASAARWRVPTAQLCSSDGGQCVGADVGSLRKAADRFTKDDAGWYVAGGTDLASGAYPLTLPVYAAIDPTLPLADRKVYADALDFVTTRGQVPGFEAGELPPGYAPLSETLRTQARAGIAELRKAVPVVVDPNDDDEGDDPGSTPAVADPAPEVDPAGGPKAGATDAPGPATSTDQIMTVSASTDTWDWWVVPLGFSLALVAGLAGPVMRLRGRFAVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMK8</accession>
    <name>A0A0Q8UMK8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cobalamin biosynthesis protein CbiM</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_20480</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896003.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46232">
        <property type="protein sequence ID" value="KRC46232"/>
        <property type="gene ID" value="ASE19_20480"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000041">
        <property type="term" value="P:transition metal ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002751">
        <property type="entry name" value="CbiM/NikMN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01891">
        <property type="entry name" value="CbiM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="40"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="72"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="110"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="141"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="176"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="228" mass="22522" checksum="DA14DCD9E26C0A09" modified="2016-01-20" version="1">MHVPDGFLDAPTSVATGVIAAAGVGVALRRARAELDDRTAPMAGLVAAFVFAGQMINFPVGAGTSGHLLGGALAAVLVGPWTGMLCISVVLLVQGLFMADGGLTALGTNITLMGIVGVVVGYAVFRLVLVVLPRKLGSVPVAAAVGALVSVPAAATAFTLLFAIGGTADVATGKVLAAMVGWHLVIGVGEAIVTGLVISAVVASRPDLVHGARGLATRTPLVTSELAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMY5</accession>
    <name>A0A0Q8UMY5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_21270</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MreD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896137.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46366">
        <property type="protein sequence ID" value="KRC46366"/>
        <property type="gene ID" value="ASE19_21270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2013195at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007227">
        <property type="entry name" value="Cell_shape_determining_MreD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04093">
        <property type="entry name" value="MreD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03426">
        <property type="entry name" value="shape_MreD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0133">Cell shape</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="34"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="119"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="157"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="194" mass="20188" checksum="9C1FDEB37A9C0481" modified="2016-01-20" version="1">MRTSSTGRLVTVLLAVLAALLVQVTVLPHFAWEVGGLGVVPDVVLLVVVATALATDTRYGMLTGFFAGLVLDLAPPADHVAGRWALALMAVGYVVGRLAHDNTSDVGRLEADGARRPPLTLVLAAAAGGSFVGTSVFALSGLFLGDSAASVADLLQVALVALVLDVVFALLVVPATYWLFRRLGRERALQGMWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN06</accession>
    <name>A0A0Q8UN06_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AMP-dependent synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21345</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896149.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46378">
        <property type="protein sequence ID" value="KRC46378"/>
        <property type="gene ID" value="ASE19_21345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="164380at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="29"/>
            <end position="496"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="627" mass="66833" checksum="28D8E4B7D59D9AB8" modified="2016-01-20" version="1">MSTDTPADTLTVRAEIEAQIAGLTLPVAFARTAAAEGDAPAYSDKVGIDLSGGYAPGWRTVSWSELRERALDVAGALMASGVARGDRVAFMASNRIEHVVADLGAVHAAAVSMSVYNTLSPEQVAYVAAHAEPAVVVLETADHLARWEKALSEGSSVRRVVLIDVEAPAGDDRFTTWDAFVAEGAAWRAAHAAELDARTAEVSPEDPLTILYTSGTTGNPKGVVLTHHAVLYECACSLQVSAPTLHNDFISYLPFAHIAERTLGMYIPQVNGAHIHLIADPALLLGALGEVHPTRFFGVPRVWEKIKTGISAKLAAETDPDKRAQVEGALAVGLEYVEALQQGGEVSPELEARYHAADAGLLSFLRALLGLDRCEWAASAAAPMPLEVAKFFAGLGMRIYDVYGMTETCAAVTACGPEQFRLGTVGRALPGIEITLAEDGEILARGPVASQGYYKQDDATAELIDADGWVHTGDIGEIDEDGFLKVVDRKKEMIITSSGKNIAPSNIENHLKESPIVGHALVFGEGRPYVVAVLTLDAEIAPLVAAQLGIPAGTSLAELAQHPAMLAVAQQAVDAANERLSRPEQVKAWELLPVEWTAESEELTPTLKLKRRVVHAKYADVLERLYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN34</accession>
    <name>A0A0Q8UN34_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">OmpR/PhoB-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21530</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AfsR/DnrI/RedD regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896184.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46414">
        <property type="protein sequence ID" value="KRC46414"/>
        <property type="gene ID" value="ASE19_21530"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15831">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005158">
        <property type="entry name" value="BTAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041617">
        <property type="entry name" value="TPR_MalT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13401">
        <property type="entry name" value="AAA_22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03704">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17874">
        <property type="entry name" value="TPR_MalT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01043">
        <property type="entry name" value="BTAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="1"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="942" mass="100340" checksum="1B736252F9EB5D7A" modified="2016-01-20" version="1">MSEVPFRVLGPIEVLDATGAPIDVGSPRHRETLAALAVDAGRVVSTDMLLDRVWGETGRGGTLANLQAVISRLRARLRDAGVPAEIVTAPPGYRLEIPDGALDADRLTAGVERAREALGAGDEPTARTALERALAWWRGEPFADVPQPFARAEALRLEGVRLTGEELAAELDLRAGHAAGAVARLQELAAQHPLRESVRGQLMRALYLAGRQADALEEYGALRTRLVEDLGVDPGPAVQRLYQQILEQDPALRPAAAAPMATLTSKPKPPSGIPSTLLLGDLVGRDRDVDYLVGLLRAPTSRLVTVTGVGGCGKTRVALAVASAAEEHFADGAVLVPLAPLRDQTAVIPAIAHAVGVAEGGDPFAALLDLLRDREQLLLLDNAEHLVDAWPEVATLAAACPGLRILVTSRTPLRVRGEVLYPLTPLDQHAAAELFVTRAAAVATGRAFVPDDPDVVQLVHRLAGIPLAIELAAARVRLLAPAAMLARLDEVMAAEGARDLPPRQRTMRAAIDWSFELLSPAEQAAFPRLAVFVGGFGLDAAAAVLADLDGGGNLLALLDALVEQSLLIVDPHGALGPRFRLLEPVAQYALTRLSADDERVARDAHLRHFTGLAAHYEPSLRGPGTVETLAGIELEHANMVAAIEWSLVSGQPDLGGWLGWHLWLFWWVRGALREGRRLMEAVHEVATDDLIRVRAGAVAAALAFAQGDLAFAREQWTTSSDLARRIGDVDGLPYAYGGIGLVALAEDDLDSAVAVFDETIALTESAGLEGEWLWTLSHVWLGTVELLRGEADRAASLVDDAVAAGRRRHDPLAVYIALFTAVQVSVVRGDFRRARDQIAEGVRLSQETRDHANLAYLLEALAVVESLDRDGDLARVGVLRGAAAELRAGAGGNVYGYYRPDEALIEQASATARASRGPSYDEDMAAGRALDVAAMEALALRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN95</accession>
    <name>A0A0Q8UN95_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">PpiC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_21780</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896225.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46456">
        <property type="protein sequence ID" value="KRC46456"/>
        <property type="gene ID" value="ASE19_21780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1838755at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000297">
        <property type="entry name" value="PPIase_PpiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023058">
        <property type="entry name" value="PPIase_PpiC_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01096">
        <property type="entry name" value="PPIC_PPIASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50198">
        <property type="entry name" value="PPIC_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0697">Rotamase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="51"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="PpiC" evidence="4">
        <location>
            <begin position="225"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="380" mass="40173" checksum="FD5CF56CCEBA3CC7" modified="2016-01-20" version="1">MPDNLVDEPTIEDDTTDVVPAGGPNGDSAETVTVRGALASLRERLGGRPRASLALAVVVALSLAAGTAFLIRDRALPAGTVAEVGDTTITVKELDQRIDALKALYGLDQPSGGKALDTFRRDAAKSAVVSVLIEKAAADRDIVVTDKQVDTILAKLIKDRYPDGGQRAFVEALGVMGANEAQVRDELHQQAVVAHLFDDVTADVEVTDEDVADAFDDREESLATPERRSLLNIVVETRSDAQAVLGLLRKGQPFGSVARTYSIDSATSAEGGRLGVASQAELDDAYGKAAFAVPSGALFGPVKTSTGWHVGRVEKVTPGAPAVYADVQVKLKRSLVTEGAVAEWRAFLEDLLDDADVRYNADYRPDSPTSLPTDVQGAQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNA7</accession>
    <name>A0A0Q8UNA7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20730</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896042.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46271">
        <property type="protein sequence ID" value="KRC46271"/>
        <property type="gene ID" value="ASE19_20730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2033994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021888">
        <property type="entry name" value="DUF3499"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12005">
        <property type="entry name" value="DUF3499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359241" evidence="2">
        <location>
            <begin position="23"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="86"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="116" mass="12698" checksum="78F0DFF99139EAE7" modified="2016-01-20" version="1">MRTCSRTACSRRAVATLTYVYADSTAVLGPLATFAEPHAYDLCDQHSERLSAPRGWEVVRLQLGTQQPGPSGDDLLALANAVREAARPVPPRTVEQPRESGREVARKGHLRMLTTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNB6</accession>
    <name>A0A0Q8UNB6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21985</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896260.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46490">
        <property type="protein sequence ID" value="KRC46490"/>
        <property type="gene ID" value="ASE19_21985"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="28"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="51"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="215" mass="23626" checksum="19C73DF7BFF25DA0" modified="2016-01-20" version="1">MFVVETPGDASASLLERALAEAGAGADDGAHPELLDAAYDLFCRHGIQRTTMDDVARRAGLSRITVYRRLSSKEALVEQVVLREFRRYLDQFLLDIAPARTAEERVVLGFVSSLRSIRSNPLIGGLMVAEPQALVPMLERTGRTLETVSRFVAGQLRREQAAGHVAPGVDVDLVAEVMVRLTTSFLLTPSHQVDLDDDEQVGDIARRYLAPMLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNK0</accession>
    <name>A0A0Q8UNK0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ROK (NagC/XylR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896337.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46568">
        <property type="protein sequence ID" value="KRC46568"/>
        <property type="gene ID" value="ASE19_22460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1130699at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000600">
        <property type="entry name" value="ROK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18964">
        <property type="entry name" value="PTHR18964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00480">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="404" mass="41902" checksum="0ADE7CF315710873" modified="2016-01-20" version="1">MRTGTGTNQEAVRRHNLGTLLRHVHDSGEVSRAELTARMGLNRSTIAALVSELDTLSLIEHASPATERRGAGRPSAGVRIRDDGPYVVAVDLGVDHAVVARVGLGGKIWHRAAAPIPEEPEAWLVGSTVANLVRQVVALSPADAPLMGIGIAVPGLVRRSDGLIRHAPNLNWHDVSFGSIVLAALSLDVPIALGNDADLGALAEHRRGAAVGVDDVVYLSGNVGVGAGVITSGHRLEGVAGYAGEVGHLYHDARGLPCHCGSRGCWETVVGAPAIAEALRCPADQVARLGEILDAMTVAPRELRPIATDLGRGLASVVNIFNPSVVILGGYFLPLFRLCRTEVTTGLGERALGPTRDAVRMTLPGLGTDSVLLGAAEMAMEPVFVDPVASLAAAVTDAPARLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNK1</accession>
    <name>A0A0Q8UNK1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Sugar ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_22450</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896335.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46566">
        <property type="protein sequence ID" value="KRC46566"/>
        <property type="gene ID" value="ASE19_22450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1179151at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="6"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="258" mass="27702" checksum="AA0171C79F37CF31" modified="2016-01-20" version="1">MTEPLLELRGVNKSFGVVHVLHDVDFAVYPGQVTALVGDNGAGKSTLVKVIAGIYGRDSGDYLFDGAPVTVHGPRDVASLGVEVVYQDLALCDNLDIVQNMFLGRELRRWPVLNEAEMESKARETLASLSVRTVKSVRQPVASLSGGQRQTVAIAKAVLWNSKIVLLDEPTAALGVAQTRQVLDLVRRLADRGLGVVLISHNMTDVFEVADRITALYLGRVAADVPTSEVTHREVVELITAGRSESHGISESPATAAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8US25</accession>
    <name>A0A0Q8US25_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">MMPL domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_21785</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896226.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46457">
        <property type="protein sequence ID" value="KRC46457"/>
        <property type="gene ID" value="ASE19_21785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="149255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="248"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="277"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="301"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="330"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="356"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="396"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="587"/>
            <end position="605"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="617"/>
            <end position="635"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="641"/>
            <end position="661"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="673"/>
            <end position="692"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="698"/>
            <end position="720"/>
        </location>
    </feature>
    <feature type="domain" description="MMPL" evidence="7">
        <location>
            <begin position="159"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF03176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="740" mass="77065" checksum="FC97E415983F746C" modified="2016-01-20" version="1">MSPTRRSWMARVVLAAMGLGLVALTVGGIARLTVSTDYSAFLPEDGQAARDLRDVADSFGGDPIVVLLESDDANGLLAGERLAGLLALEGRLSGLRNVAVAYGPATTLNQTAIQVQNLLATISGRRDGLKEADRADDLARFERRYGALLVQGMPAGLPTLRNDDFVRTVVYDAAGEPRARWRQFVPDAHAVAILVRPRSGLDQAGLKNLVDDVRGVVKDDTTVKPDRTTITGVPVLSANLADQVRSELPLVGGAAVALVAGALILSRWRRNTLQRLVPLVPMLAAVAATLAWFGWRGTPLSLGAVLFLPLMLGIGSYYPVYLAQRGHRRTVVAVAAAAAAAFACLLLSPVQFVQDLGLAMVIGIGVTTGLSTLLYRGGGENPAPTREATALATRRISVTAVAGFAALLGAPAVLGWLALGSVSVETSPETLLSGARGYDDAVTVQDRLGFAGELDVVLEGDDVLSPEALAWLRSSEEEILRTHGDTIQSVVSPGQLLGFLGDHPSQSQIDAAMRLLPAYVTGAAVTVSQDRAVIALGADLDDLATQQETIASLRSMTASPPDGFDVRIAGIPVLAAEGYDVLVRDRHWSNLAGIAAAGLVLAACLRRRRDAARAVSAALLATGWGLLAATLLGVALNPITIALGSLTAAVGCEFAVMLSEARRSGDRSLARSVIVAAAVSAAGYSALSVSHLDLLRQFSATLVAAVGLALVAGYAVSLTVPRSTRGTSQTTSRPQLAGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU15</accession>
    <name>A0A0Q8UU15_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">tRNA-specific 2-thiouridylase MnmA</fullName>
            <ecNumber evidence="7">2.8.1.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mnmA</name>
        <name evidence="8" type="ORF">ASE19_21120</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>AH2 + ATP + S-sulfanyl-L-cysteinyl-[protein] + uridine(34) in tRNA = 2-thiouridine(34) in tRNA + A + AMP + diphosphate + H(+) + L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:47032"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:11726"/>
            <dbReference type="Rhea" id="RHEA-COMP:11727"/>
            <dbReference type="Rhea" id="RHEA-COMP:11728"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61963"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:87170"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.8.1.13"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the MnmA/TRMU family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.13" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896110.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46339">
        <property type="protein sequence ID" value="KRC46339"/>
        <property type="gene ID" value="ASE19_21120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1054741at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016783">
        <property type="term" value="F:sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01998">
        <property type="entry name" value="tRNA_Me_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.280">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00144">
        <property type="entry name" value="tRNA_thiouridyl_MnmA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023382">
        <property type="entry name" value="Adenine_a_hdrlase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004506">
        <property type="entry name" value="tRNA-specific_2-thiouridylase"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00420">
        <property type="entry name" value="trmU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="2 7" id="KW-0820">tRNA-binding</keyword>
    <feature type="region of interest" description="Interaction with tRNA" evidence="7">
        <location>
            <begin position="148"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="7">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine persulfide intermediate" evidence="7">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="6"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="32"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Interaction with tRNA" evidence="7">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with tRNA" evidence="7">
        <location>
            <position position="347"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Alternate" evidence="7">
        <location>
            <begin position="101"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="371" mass="39487" checksum="3F12026B4906C3CB" modified="2016-01-20" version="1">MKVVAAMSGGVDSAVAAARAKEAGHDVTGIHLALSRNPKSYRTGARGCCTIEDANDARRAADVIGIPFYVWDLSDRFHTDVVEDFMDTYAAGQTPNPCLRCNEKIKFAAVLDRALALGFDAVATGHYATVVTSPTGDVELHRAVDGAKDQSYVLGVLDEQQLRHSLFPLGDTPKPQVREEAAARGLLVADKPDSHDICFVADGDNTGWLREKLGDRAPNQGGEIVDEATGTVLGQHTGTYGFTIGQRKGLRLGHPAPDGRPRYVLDIEPVSGTVTVGPRERLAVERLAGDRLRWCGTPLAPGTVLDGPDVTVQLRAHGAEHRAVVRVGTDRLEVELIDHASGIAPGQAVVVYDGTRVVGSATITVAQRVPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUB5</accession>
    <name>A0A0Q8UUB5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Alpha-E domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17600</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893149.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48746">
        <property type="protein sequence ID" value="KRC48746"/>
        <property type="gene ID" value="ASE19_17600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1433145at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007296">
        <property type="entry name" value="DUF403"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04168">
        <property type="entry name" value="Alpha-E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alpha-E" evidence="1">
        <location>
            <begin position="1"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="317" mass="35072" checksum="725CE81AE12AF40B" modified="2016-01-20" version="1">MLSRIAESLFWIGRYIERADDTARILDVQTQLLLEDAAVDEAQTCRDLLSCMGVEPADAKEYGVDLFGSVSIEQVLRLLAYDAGSPSSIAAIFGAARESARGARETLTVPLWEVINTTWRPIPSGHFEALRPPYIFSWVRERAALINGTADATMTRDEGWQFIVLGRNIERADMTSRLVATTALSASGGQWTSALRASGAYDAFLRTYRGIETDRAAAEFLLLDRLFPRSVVFALNRAEQALDNLGGDPRRAGFQDEAHRLIGRMRAELEYRSLADLVEDLPDEMERLQRTCAAATDAISRRYFAGSEALAWKGVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUH8</accession>
    <name>A0A0Q8UUH8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Precorrin-8X methylmutase</fullName>
            <ecNumber evidence="6">5.4.99.61</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">cobH</name>
        <name evidence="6" type="ORF">ASE19_17475</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CobH/CbiC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.61" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893128.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48724">
        <property type="protein sequence ID" value="KRC48724"/>
        <property type="gene ID" value="ASE19_17475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1812068at2"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016993">
        <property type="term" value="F:precorrin-8X methylmutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003722">
        <property type="entry name" value="Cbl_synth_CobH/CbiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036588">
        <property type="entry name" value="CobH/CbiC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02570">
        <property type="entry name" value="CbiC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63965">
        <property type="entry name" value="SSF63965"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="4 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiC" evidence="5">
        <location>
            <begin position="20"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC48724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="221" mass="22904" checksum="F39B98ADE8537E3A" modified="2016-01-20" version="1">MTDLTAPPRRYDYIADGPAIYVDSFATIRRESDLSGVPAEAEKVAVRMIHGSGQTDLVRDLVVHPGLVAAARGALSAGAPILCDARMVAMGITAGRLPADNPVHCFLTDPQVPALAARWSTTRTAAAVSLWEPLLEGAVVAIGNAPTALFHLLEMILDGGPRPAAIVGCPVGFIGAAESKDALASFADDHGIDIPFVTVRGRRGGSAMASSAVNALAQEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUM6</accession>
    <name>A0A0Q8UUM6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18320</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893275.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48874">
        <property type="protein sequence ID" value="KRC48874"/>
        <property type="gene ID" value="ASE19_18320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016780">
        <property type="term" value="F:phosphotransferase activity, for other substituted phosphate groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00379">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="44"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="90"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="118"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="204"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="243" mass="25434" checksum="FE6D6B231E930AA9" modified="2016-01-20" version="1">MDGVTPTRDIWTRVAIDPLVDPLARVLAPHRTITPNRITAASGLLGVAAAASLAGGLLRLGGALFLLRFLADCLDGKVARSQQSSSHRGALLDVATDVVCVTAAYAALSWWAVRTHRVDPLLAGALLGALGTYGWALAHRKLLARVADRGAGSARIPQATGLPVVDGWLRLCRRAGMRPVPWSVEAETLVLGLLPIVGPGAAATGLPVALAFYVVASLVNLRRCWRISGLLDRQDVGARGGVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV79</accession>
    <name>A0A0Q8UV79_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19160</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893414.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49012">
        <property type="protein sequence ID" value="KRC49012"/>
        <property type="gene ID" value="ASE19_19160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="162819at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359462" evidence="1">
        <location>
            <begin position="25"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="domain" description="SBP_bac_5" evidence="2">
        <location>
            <begin position="92"/>
            <end position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC49012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="576" mass="63033" checksum="01C4134EAEE6DDBE" modified="2016-01-20" version="1">MASKKKRMLAVTAGALLASTVLAACGSGDDDKKSEGAGETGGTLYFNVEKPIDHWDPQRTYVGTDISKQSRLVYRELVTFGTSEDAVESAKPLPDLATDTGTASDGGKVWQFTLRDGVKWEDGSDITCEDLKYGLSRNFATDVIVGGPAFYILSYLDIPADADGTPQYKGPYTKKGQDLFDKAVTCDGKTITYNFNKPWPDFNLAIAALHFASPYRAEKDQGDKSNYSVFSSGPYKLEGTWEKESGGTFVRNPEYDKATDDTDSRNALPDKIVFKMGTKLETTYDAILANKGDAACTVSDNRLPPSKFSEIPNVQDRYQNPDSPYADYLWFNTKKLPLEVRQALAMATNREGWIAAGGGERAYTPAYSVVNPAVAGYKEVPTYKDIPLAGDPDAAKKILDEAGIKTPYKIEIRYPQSETADKQAAALKDTWDKAGFTVTLSPEGDVYYSNIQKPDHNYDVGWAGWGADWPSPMTVLPPLFDSRANIQGGSLGQDYGKYEGKAFNDKITEAQNATDLDTQITLLQEADQILADDMVYMPLEIAKFNWVTGKNVDFHTTPGSNSFPDLGLIGLRNGGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV98</accession>
    <name>A0A0Q8UV98_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alkane 1-monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18460</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">To bacterial alkanal monooxygenase alpha and beta chains.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893842.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49112">
        <property type="protein sequence ID" value="KRC49112"/>
        <property type="gene ID" value="ASE19_18460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1003376at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019949">
        <property type="entry name" value="Luciferase_OxRdatse_group-1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03558">
        <property type="entry name" value="oxido_grp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="2">
        <location>
            <begin position="14"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC49112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="324" mass="34213" checksum="56BFA17994A5B2AE" modified="2016-01-20" version="1">MPLTLLDLAPIPSDGTATDAVAMSVELARAAERSGYDRVWYAEHHGTTTASAAPAVLAAHVASRTKTIRVGAGGVMLPNHSPLSIAEQFGTLAAMYPNRIDLGVGRATGADAGMAYALRRDGASDTFEQDVAELRAFLGEDSLIPGVVAVPGQGTRVPITILGSSLFGARLAAKMGLPFAFAAHFSPGDLDQAVATYRRQFKPSAEHSEPYLMITANVIASDDAASVSSNLRGMLRFEARKVLTRRPGDQSLTDAQVDTFLDSPQGAAAAQMFRHAATGNPSEVVRALETLAQRTGADELILVHQSPDPEHRIRSLVLTGRAMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVE4</accession>
    <name>A0A0Q8UVE4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17550</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893819.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49092">
        <property type="protein sequence ID" value="KRC49092"/>
        <property type="gene ID" value="ASE19_17550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041581">
        <property type="entry name" value="Glyoxalase_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18029">
        <property type="entry name" value="Glyoxalase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="6"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="117" mass="12981" checksum="71B7E4EBB44D82ED" modified="2016-01-20" version="1">MERVIGIGGVFLRATDPAALGAWYREALGIDADEHGLWFPDAGPTVFAAFAHDTDYFGARTQQAMINFRVRDLDAMLAQLRRLGAEVVDDLQEMDGVGRFGWVTDPEGNRVELWQPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXR8</accession>
    <name>A0A0Q8UXR8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15735</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50070">
        <property type="protein sequence ID" value="KRC50070"/>
        <property type="gene ID" value="ASE19_15735"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="99" mass="10855" checksum="E81F73FC7825846B" modified="2016-01-20" version="1" fragment="single">MSDLALDEIAIARCEGVGATRRALADALDLRHRLPLVWARAQKLECETWVVRRVAVLSRKLTRDQVRIVDIAVAAALGQAPNRILAIAEAKIIEADTTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY75</accession>
    <name>A0A0Q8UY75_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Protoheme IX farnesyltransferase</fullName>
            <ecNumber evidence="7">2.5.1.141</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Heme B farnesyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Heme O synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ctaB</name>
        <name evidence="8" type="ORF">ASE19_15905</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>(2E,6E)-farnesyl diphosphate + H2O + heme b = diphosphate + Fe(II)-heme o</text>
            <dbReference type="Rhea" id="RHEA:28070"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
            <dbReference type="ChEBI" id="CHEBI:60530"/>
            <dbReference type="ChEBI" id="CHEBI:175763"/>
            <dbReference type="EC" id="2.5.1.141"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Porphyrin-containing compound metabolism; heme O biosynthesis; heme O from protoheme: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="7">Carbon 2 of the heme B porphyrin ring is defined according to the Fischer nomenclature.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.141" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50100">
        <property type="protein sequence ID" value="KRC50100"/>
        <property type="gene ID" value="ASE19_15905"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00834">
        <property type="reaction ID" value="UER00712"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008495">
        <property type="term" value="F:protoheme IX farnesyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048034">
        <property type="term" value="P:heme O biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd13957">
        <property type="entry name" value="PT_UbiA_Cox10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00154">
        <property type="entry name" value="CyoE_CtaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006369">
        <property type="entry name" value="Protohaem_IX_farnesylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000537">
        <property type="entry name" value="UbiA_prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044878">
        <property type="entry name" value="UbiA_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43448">
        <property type="entry name" value="PTHR43448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01040">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01473">
        <property type="entry name" value="cyoE_ctaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="37"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="59"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="103"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="133"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="158"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="183"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="228"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="253"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="292"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC50100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="314" mass="34520" checksum="1077DC400AC0AB6E" modified="2016-01-20" version="1">MTYVDPTSPELMAEDAGTPKTFRDVVMAYVGLTKPRVIELLLLTTVPVMFFAARGVPALGLVVATVIGGTFSAGSASVFNCVYDRDIDEQMRRTRRRALPRHIVTPAAALVFGTVLGVLSTVVLAVWVNPLSAVLSVSANAFYVFVYTMLLKRRTTQNIVWGGIAGCFPALIGWTAVTGELSWVPIVLFMVVFFWTPPHTWALALRYREDYAQVDVPMLPVVRSARQVAFQIVVYSWVMVATSLVLWPVADTGLVYPIVAVVLGAVFLVQAHGLHRRAKTSDELSVLQPMRLFHSSNLYLSLLFVAVAIDPLLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V092</accession>
    <name>A0A0Q8V092_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17745</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893173.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48771">
        <property type="protein sequence ID" value="KRC48771"/>
        <property type="gene ID" value="ASE19_17745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1704438at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="126"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="152" mass="16651" checksum="8C92C8EB0B6292AD" modified="2016-01-20" version="1">MASTHTWDHLTHDMREELNDLTHFSTIDANRQGRVALWATLTALPLVWGLDMLFGVLTDKWTSYLAVWADNFLPGNADDAVMWIGIITVAIAALVAFAPHFGGDVLGVWLCLLAINLFSVDGVAHLAVGMLALGFCSFAMARMVRGDHIREA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1K5</accession>
    <name>A0A0Q8V1K5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14900</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896448.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51381">
        <property type="protein sequence ID" value="KRC51381"/>
        <property type="gene ID" value="ASE19_14900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1261526at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="246" mass="25470" checksum="6E2604065DC924EB" modified="2016-01-20" version="1">MSARIAVVTGASSGIGAATARHLAREGFTVVCAARRADRVEALAAEIGGRAVACDVTDAAQVAALAEAVGPRLDVLVNNAGGAFGFSPVAEADADEWRRMYDVNVLGVLLVTQALLPALVASGAGVIVNVGSTAGRLVYEGGAGYTAAKHGTRAVTQTLRLELFDQPVRVCEVAPGMVQTDEFSLVRFGGDQARADAVYAGVPDPLVADDVADAITWVATRPPHVNIDELVIKPRAQAAQHKVHRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1R8</accession>
    <name>A0A0Q8V1R8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Cysteine--tRNA ligase</fullName>
            <ecNumber evidence="11">6.1.1.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Cysteinyl-tRNA synthetase</fullName>
            <shortName evidence="11">CysRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">cysS</name>
        <name evidence="13" type="ORF">ASE19_15020</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + L-cysteine + tRNA(Cys) = AMP + diphosphate + L-cysteinyl-tRNA(Cys)</text>
            <dbReference type="Rhea" id="RHEA:17773"/>
            <dbReference type="Rhea" id="RHEA-COMP:9661"/>
            <dbReference type="Rhea" id="RHEA-COMP:9679"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78517"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.16"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="11">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 11">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.16" evidence="11"/>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896465.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51398">
        <property type="protein sequence ID" value="KRC51398"/>
        <property type="gene ID" value="ASE19_15020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="952207at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004817">
        <property type="term" value="F:cysteine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006423">
        <property type="term" value="P:cysteinyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00672">
        <property type="entry name" value="CysRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00041">
        <property type="entry name" value="Cys_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015803">
        <property type="entry name" value="Cys-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015273">
        <property type="entry name" value="Cys-tRNA-synt_Ia_DALR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024909">
        <property type="entry name" value="Cys-tRNA/MSH_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032678">
        <property type="entry name" value="tRNA-synt_1_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10890">
        <property type="entry name" value="PTHR10890"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09190">
        <property type="entry name" value="DALR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01406">
        <property type="entry name" value="tRNA-synt_1e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00983">
        <property type="entry name" value="TRNASYNTHCYS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00840">
        <property type="entry name" value="DALR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00435">
        <property type="entry name" value="cysS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="8 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 11 13" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="DALR_2" evidence="12">
        <location>
            <begin position="341"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="11">
        <location>
            <begin position="31"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="11">
        <location>
            <begin position="270"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="214"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="243"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC51398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="464" mass="50599" checksum="A4A0D2860E72D9DA" modified="2016-01-20" version="1">MSIRLYDTATREVRDFVPLVEGRAGLYVCGLTVQSEPHVGHVRSAVNFDVLQRWLRHRGYDVTFIRNITDIDDKILAKSAEQGRPWYNLAYAMKIELDKAYAALNVAPPTYEPAATGHIPEMIVLIERLIERGHAYPAADGSGDVYFDVRSWASYGELTHQGVDDMEPAADADPRGKRDPRDFALWKGRKESEPATASWPSPWGPGRPGWHIECSAMAGKYLGDAFDIHGGGVDLRFPHHENEQAQSRAAGGAFASYWMHNAWITTAGEKMSKSLGNTLSIPSILERYRGAELRFYVVAAHYRSHVEFSFEALDEAAVGYRRIEAFLERAGSSASGDLPEAFAAAMDDDLGTPAAVAVLYDTVREGNRQLAAGEDATTTAGAVAAMLDVLGVHPADPAWAGSGGSDNEERLTAAVDALVAGLLDERTQARADKDWARADAIRDRIKAAGIEVTDTPDGPTWTVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1Y6</accession>
    <name>A0A0Q8V1Y6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA ligase (ATP)</fullName>
            <ecNumber evidence="1">6.5.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_15380</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.5.1.1" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896527.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51462">
        <property type="protein sequence ID" value="KRC51462"/>
        <property type="gene ID" value="ASE19_15380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1073940at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003910">
        <property type="term" value="F:DNA ligase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07905">
        <property type="entry name" value="Adenylation_DNA_ligase_LigC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd07970">
        <property type="entry name" value="OBF_DNA_ligase_LigC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044119">
        <property type="entry name" value="Adenylation_LigC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012309">
        <property type="entry name" value="DNA_ligase_ATP-dep_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012310">
        <property type="entry name" value="DNA_ligase_ATP-dep_cent"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016059">
        <property type="entry name" value="DNA_ligase_ATP-dep_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044117">
        <property type="entry name" value="OBF_LigC-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04679">
        <property type="entry name" value="DNA_ligase_A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01068">
        <property type="entry name" value="DNA_ligase_A_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00697">
        <property type="entry name" value="DNA_LIGASE_A1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50160">
        <property type="entry name" value="DNA_LIGASE_A3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_LIGASE_A3" evidence="3">
        <location>
            <begin position="117"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC51462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="370" mass="41377" checksum="ACA88D3C98E3C622" modified="2016-01-20" version="1">MDLPVMPPVRPMLAKAVSGVPDPAKHDPLGLSFEPKWDGFRCILFKDGDEVELASRNTKPLTRYFPELVEAARAELPERCVLDGEIFVALDGDDGKGRLQFEVLQERIHPAVSRITLLSEQTPADFVAFDLLALGDESYVDRPFAERRAALEEALAHLGADTGRCHLTRTSTDPAVAEEWFHQFEGAGLDGVVAKPLSAPYAENARTMLKIKHERTADVVLAGYREHKTSTPGNPLIGSLLLGLYADGELQHIGVSASFTAARRAELWHELQPLVVPIEEHPWGRWQEFLVANPGRQPGTQSRWSQGKDLSFTPLRPERVIEVKYDAMEGSRFRHTAHFKRWREDRDPESCGYDQLEQPVKYDLADVLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2B4</accession>
    <name>A0A0Q8V2B4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17545</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893140.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48736">
        <property type="protein sequence ID" value="KRC48736"/>
        <property type="gene ID" value="ASE19_17545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1159949at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="250" mass="26743" checksum="65805FC442AD90EB" modified="2016-01-20" version="1">MARSTRSRTILGAIASTPERAHQLFRRRFPVVAVTGMTGVGKTQLADRLTRRGTDGGPAEVGSAVMERRTRRSRRLHGFRFLVVPGDNAATRLGALDEVFHDEPVDGVIHVVAHGHATPRRAGGTSGAASATREEQLAAELEDWTITAHRIASMAVRRDRPVWLVIAVTKADLFADDIDEAIRYYSPGSGTPFGDKVDELRALAGGARLSVDVLPVSSQGGSRNAALSEKQANALVDALATRLAQLSGHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3V9</accession>
    <name>A0A0Q8V3V9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17930</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893203.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48801">
        <property type="protein sequence ID" value="KRC48801"/>
        <property type="gene ID" value="ASE19_17930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1396602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="317" mass="34384" checksum="A894FA5AB0041370" modified="2016-01-20" version="1">MTNPSHGGTPADETCSEAWSAFEVLLGDHLATMLDVEDHLIVEIPDGGASGTAPYAQFAGCGDGSTVHGEVTSNAYLGAAFLLDEDEELLLDDAGFVLADDDGTPANWSSEEDVTVVRALASRVVFALRQVFGIAHPHLMTYQAWGPAASGARRLGLCPTADVPVEGEGADQAPRTGLRKTAYKPKTRARLLRLVGRALEERYGVASPLDDDEDYLLRHLDQPVWVRVRQDQPAVEILARVTHDVRSLRGTAVEIGILNRDHLWVKWELRDRAVFQTLVVPGFPFAPLHLAAMLDVFEAAMTATRDDLALRVGGRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V494</accession>
    <name>A0A0Q8V494_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ArsR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18750</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893347.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48945">
        <property type="protein sequence ID" value="KRC48945"/>
        <property type="gene ID" value="ASE19_18750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1617768at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="126" mass="14238" checksum="2D6E8666719289A3" modified="2016-01-20" version="1">MVDNDDRLSRVFGALADPTRRDMVARLATGDATVGELAAPYDVSLQAVSKHLKVLEEAGLVRRSRDAQRRPVHLDAEVFDLMTKWIEKYRQRAEERYQRLDQVLARMQGKDLATANDDDQQRGAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4A9</accession>
    <name>A0A0Q8V4A9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 8">Protein RecA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6 7 8">Recombinase A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">recA</name>
        <name evidence="12" type="ORF">ASE19_18845</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 9">Belongs to the RecA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893363.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48961">
        <property type="protein sequence ID" value="KRC48961"/>
        <property type="gene ID" value="ASE19_18845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1080436at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00983">
        <property type="entry name" value="recA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00268">
        <property type="entry name" value="RecA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013765">
        <property type="entry name" value="DNA_recomb/repair_RecA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020584">
        <property type="entry name" value="DNA_recomb/repair_RecA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020588">
        <property type="entry name" value="RecA_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023400">
        <property type="entry name" value="RecA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020587">
        <property type="entry name" value="RecA_monomer-monomer_interface"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45900">
        <property type="entry name" value="PTHR45900"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00154">
        <property type="entry name" value="RecA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00142">
        <property type="entry name" value="RECA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54752">
        <property type="entry name" value="SSF54752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02012">
        <property type="entry name" value="tigrfam_recA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00321">
        <property type="entry name" value="RECA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50162">
        <property type="entry name" value="RECA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50163">
        <property type="entry name" value="RECA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 9" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 9" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="7 8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 7 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 7 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="RECA_2" evidence="10">
        <location>
            <begin position="36"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="RECA_3" evidence="11">
        <location>
            <begin position="200"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="66"/>
            <end position="73"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00033319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC48961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="350" mass="37254" checksum="90813DCB10F08161" modified="2016-01-20" version="1">MAGDDRNKALETALLNIEKQYGKGSVMRLGDDSRAPLDVIPTGAIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVASAQAAGGIVAFIDAEHALDPDYAKALGVDTDALLVSQPDSGEQALEIADMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIETLKDGTDMVGNRTRVKVVKNKVAPPFKQAEFDIMYGKGISREGGLIDVGVEAGLVRKAGAWYTYEGDQLGQGKENARTFLKDNPDLANELEKKILEKLGVTPTVDGDFNDLSDDPIGVDSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5U0</accession>
    <name>A0A0Q8V5U0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18865</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893853.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49122">
        <property type="protein sequence ID" value="KRC49122"/>
        <property type="gene ID" value="ASE19_18865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1347131at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="258" mass="28036" checksum="ADDF1B2573ABB91B" modified="2016-01-20" version="1">MERVRVTRYVTPLREGGSLPGIVEADDLGTYVCKFRGAGQGPRVLVAEVIVAGLARLLDVPTPDQVVLDLDPDIARFEADEEVQDLINASAGLNLGIDFLPGSFGYDPTTEPDPELAGRVLWLDAFTANVDRSWRNPNLLVWRGTLQAIDHGASLYFHHSWSGGPGDPERFARQPYDTSEHILRAYAGQARAQDAALAARVDDAALTAVLDAVDDDWLEPVPGAETPDALRERYVAFLAARRDGGRPWLPEVLAEAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5U8</accession>
    <name>A0A0Q8V5U8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Esterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_09510</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894600.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52662">
        <property type="protein sequence ID" value="KRC52662"/>
        <property type="gene ID" value="ASE19_09510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="373926at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002641">
        <property type="entry name" value="PNPLA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01734">
        <property type="entry name" value="Patatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51635">
        <property type="entry name" value="PNPLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="1 2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PNPLA" evidence="3">
        <location>
            <begin position="6"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="GXSXG" evidence="2">
        <location>
            <begin position="37"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="DGA/G" evidence="2">
        <location>
            <begin position="153"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="33450" checksum="219DC21F5AA247A0" modified="2016-01-20" version="1">MARVALVLGSGGARGYAHLGAVEELRSRGHEIVAVSGTSMGALVGGLVAAGKDREFADWASTLTGRRVLRLADPTWAGGGAATAERLMTTLDELVGDVMIEDLPIPYTAVATDLVARREVWFQRGPLIPAIRASIAIPGLFTPAVVDGRILVDGGLLNPLPLDPTAAAAADFTVAVSLQGPREPHEPASPARGFSVRRAEWAADLRRRFRRNEGLVAVDEDTDLADVVPIAAPEAPAEIGPDVDVRPDVRTSEVVSLSFDAMQSLITRYRLAALPPDVLVTVPLGAARTLDFHRAEELIELGRQLTKTALDDADR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5W1</accession>
    <name>A0A0Q8V5W1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8 13">Glutamyl-tRNA reductase</fullName>
            <shortName evidence="8">GluTR</shortName>
            <ecNumber evidence="4 8 13">1.2.1.70</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">hemA</name>
        <name evidence="17" type="ORF">ASE19_10210</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <reference evidence="17 18" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 13">
            <text>(S)-4-amino-5-oxopentanoate + NADP(+) + tRNA(Glu) = H(+) + L-glutamyl-tRNA(Glu) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:12344"/>
            <dbReference type="Rhea" id="RHEA-COMP:9663"/>
            <dbReference type="Rhea" id="RHEA-COMP:9680"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57501"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="EC" id="1.2.1.70"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8 13">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="domain">
        <text evidence="8">Possesses an unusual extended V-shaped dimeric structure with each monomer consisting of three distinct domains arranged along a curved 'spinal' alpha-helix. The N-terminal catalytic domain specifically recognizes the glutamate moiety of the substrate. The second domain is the NADPH-binding domain, and the third C-terminal domain is responsible for dimerization.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="8">During catalysis, the active site Cys acts as a nucleophile attacking the alpha-carbonyl group of tRNA-bound glutamate with the formation of a thioester intermediate between enzyme and glutamate, and the concomitant release of tRNA(Glu). The thioester intermediate is finally reduced by direct hydride transfer from NADPH, to form the product GSA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8 13">Belongs to the glutamyl-tRNA reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.70" evidence="4 8 13"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894715.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52782">
        <property type="protein sequence ID" value="KRC52782"/>
        <property type="gene ID" value="ASE19_10210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1358620at2"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00316"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008883">
        <property type="term" value="F:glutamyl-tRNA reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00087">
        <property type="entry name" value="Glu_tRNA_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000343">
        <property type="entry name" value="4pyrrol_synth_GluRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015896">
        <property type="entry name" value="4pyrrol_synth_GluRdtase_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015895">
        <property type="entry name" value="4pyrrol_synth_GluRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036453">
        <property type="entry name" value="GluRdtase_dimer_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036343">
        <property type="entry name" value="GluRdtase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006151">
        <property type="entry name" value="Shikm_DH/Glu-tRNA_Rdtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00745">
        <property type="entry name" value="GlutR_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05201">
        <property type="entry name" value="GlutR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01488">
        <property type="entry name" value="Shikimate_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000445">
        <property type="entry name" value="4pyrrol_synth_GluRdtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69075">
        <property type="entry name" value="SSF69075"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69742">
        <property type="entry name" value="SSF69742"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01035">
        <property type="entry name" value="hemA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8 11" id="KW-0521">NADP</keyword>
    <keyword evidence="6 8 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7 8 13" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GlutR_N" evidence="16">
        <location>
            <begin position="6"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Shikimate_DH" evidence="15">
        <location>
            <begin position="176"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="domain" description="GlutR_dimer" evidence="14">
        <location>
            <begin position="318"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8 10">
        <location>
            <begin position="49"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8 10">
        <location>
            <begin position="114"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="8 9">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <begin position="189"/>
            <end position="194"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for activity" evidence="8 12">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000445-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000445-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000445-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000445-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU000584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF01488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF05201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KRC52782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="435" mass="45969" checksum="171D3A14A1EFF45A" modified="2016-01-20" version="1">MSVLVVGISHNSAPMSLLERVALDEDGVHKLVADAASCEHVTEATVIATCNRLEIYTEVERFHGSIEQISRLLVEQAGETTEAMLPHLYVHYDDGAISHLFQVAAGLDSMAVGEGQILGQTREALRRGQELGTVGPALNLLFQQALRVGKRTRAETDIDQVAPTLVSAALGETTKAVGPVQGQYVVVVGAGAMAGLATATVSRLGAGTLSVVNRSVERGEWLASQYDAQAVPLEELATELGRADLVISCTGSAGSIIDAAQLAAARAGNDKPVALIDLALPHDIDRDVRALESVTLVGLAELAEVLQDSATGQEVLEVRRILGEEVTAFLAARRQASVTPTVVALRSMATNVVDAEMSRLEARLPDLDAATREEIRHAVRRVADKLLHEPTVRVKELANEQGAVSYAAALAELFALDPEAVDAVTRPIGVEEAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V608</accession>
    <name>A0A0Q8V608_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F420-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894545.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52607">
        <property type="protein sequence ID" value="KRC52607"/>
        <property type="gene ID" value="ASE19_09200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019921">
        <property type="entry name" value="Lucif-like_OxRdtase_Rv2161c"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03619">
        <property type="entry name" value="F420_Rv2161c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="305" mass="34012" checksum="0DA37303BCBA6B40" modified="2016-01-20" version="1">MLMILSENWTLTDGRNLGDLVTWARIAEDTGFDSVMISEHVVLGPDASDKGVMGNPRDYAAPGNQDPLMPWPNSLMLFSAIASVTERIRLVGAAVLAPLRHPLLLARELGTLDLISEGRLVVQPNVSWSKDEYAAMGVPFRERGKILSEQLEVMKLVFEQSPATHHGHYFDFEDIYLEPKAFRPEGPRMWFGGQKAHGAVVERIVKYGHGFHPFGRPTEEDLRVIREAMAEAGRDMAELEMVGGVRYSFPDDHSPADLAESMDSIPEQLEQGFTTICIKPSMYIDDQSGMETFCKDVMKRAEAMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6H0</accession>
    <name>A0A0Q8V6H0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 13">Fructose-bisphosphate aldolase</fullName>
            <shortName evidence="13">FBP aldolase</shortName>
            <ecNumber evidence="5 13">4.1.2.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_10420</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 13">Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>beta-D-fructose 1,6-bisphosphate = D-glyceraldehyde 3-phosphate + dihydroxyacetone phosphate</text>
            <dbReference type="Rhea" id="RHEA:14729"/>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.1.2.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12 13">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="12 13">Binds 2 Zn(2+) ions per subunit. One is catalytic and the other provides a structural contribution.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 13">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 4/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 13">Belongs to the class II fructose-bisphosphate aldolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.2.13" evidence="5 13"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894753.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52820">
        <property type="protein sequence ID" value="KRC52820"/>
        <property type="gene ID" value="ASE19_10420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="827430at2"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00183"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004332">
        <property type="term" value="F:fructose-bisphosphate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000771">
        <property type="entry name" value="FBA_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006411">
        <property type="entry name" value="Fruct_bisP_bact"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30559">
        <property type="entry name" value="PTHR30559"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01116">
        <property type="entry name" value="F_bP_aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001359">
        <property type="entry name" value="F_bP_aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00167">
        <property type="entry name" value="cbbA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01520">
        <property type="entry name" value="FruBisAldo_II_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00602">
        <property type="entry name" value="ALDOLASE_CLASS_II_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00806">
        <property type="entry name" value="ALDOLASE_CLASS_II_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="9 13" id="KW-0456">Lyase</keyword>
    <keyword evidence="7 12 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 12 13" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Dihydroxyacetone phosphate binding" evidence="11">
        <location>
            <begin position="253"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="region of interest" description="Dihydroxyacetone phosphate binding" evidence="11">
        <location>
            <begin position="274"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="10">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="96"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="212"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>dihydroxyacetone phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001359-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR001359-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR001359-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU366023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC52820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="343" mass="35883" checksum="B6D2FD048DC36541" modified="2016-01-20" version="1">MPIATPEKYAEMLDAAKAGAFAFPAINVSSSQTLNAALKGFADAGSDGIIQISTGGAEYLSGPTVKDMVTGSVAFAAYAAEVAKSYPVNIALHTDHCPKDKLDGFVRPLLDISAERVARGELPLFQSHMWDGSAVPLDENLQIAEELLAKAKAARIILEIEVGVVGGEEDGVDGGMGEHLYTTPEDALATVRALGVGENGRYLTALTFGNVHGVYKPGNVKLRPEILRDAQAAVVAELGLPEGSKPFDLVFHGGSGSTAEEIGAAVDFGVVKMNVDTDTQYAFTRPVAAHMFSNYDGVLKVDGEVGNKKAYDPRAWGKAAEAGMAARVVEACQNLRSAGTTVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V766</accession>
    <name>A0A0Q8V766_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13080</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895747.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53285">
        <property type="protein sequence ID" value="KRC53285"/>
        <property type="gene ID" value="ASE19_13080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1186478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="253" mass="27134" checksum="EB7472BF34D7FBB9" modified="2016-01-20" version="1">MSKTILITGASSGLGAEMARQFAARGNDLALAARRTERLEELRAEILAAHPERRVAIRALDVQDHAAVFTAFDELNDELGRIDRVVVNAGLGKGARLGTGRFDANLETAMTNFVGALAQTEAAMQIFRAQEAGHLVMVSSMSALRGMPAAMTTYAATKAGVAHLAEGLRTELHGTRLQKKIKVTVLYPGYIRSEMNDKVEQSTPLMASTEKGVRAMVAAIEKEVADAHVPPLPWAAMAPVMKHAPLGILKKLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V772</accession>
    <name>A0A0Q8V772_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11805</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894997.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53067">
        <property type="protein sequence ID" value="KRC53067"/>
        <property type="gene ID" value="ASE19_11805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1856687at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="17899" checksum="9FF59B4EE7585F0C" modified="2016-01-20" version="1">MDDEVLTGYLQHHWAGSTAGVAAFRRVGRNLPDTQAAAEIRDLAGEVAADREALRVMMRRVGTRPSVIGTTLARAGELLGRLKPNGSLVHRTPLTDVVELETLRLAVTGKRAGFEVLRAAADDDQRLDPFALDRLLARADEHLRTLERLHVTVSRDRLVGHPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V794</accession>
    <name>A0A0Q8V794_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RND transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_13260</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895779.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53317">
        <property type="protein sequence ID" value="KRC53317"/>
        <property type="gene ID" value="ASE19_13260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="149255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="178"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="229"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="276"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="306"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="365"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="522"/>
            <end position="541"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="548"/>
            <end position="569"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="589"/>
            <end position="610"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="631"/>
            <end position="655"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="667"/>
            <end position="690"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="7">
        <location>
            <begin position="522"/>
            <end position="689"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="721" mass="74495" checksum="90826D696BDC265E" modified="2016-01-20" version="1">MSHLSALPSRAARWSATHPWRAIGAWLLLVVVAVGLAMAVPTKEVSDADYRVGDSGRAEALLDGSGLDHPPTENVLITAASGSLDQAAARSAAADVTSRMAGLPGVADVGEPVPSEDGTALMVPVELTSDEVDADPLLDATAAVQSAHPDLRVAQAGDVTIDAAIDERVGEDLHSAEFISLPITLVLMLLAFGALVAAGLPVLLAATSVTATIGISAPVSYLVPAESTVTSMIVLIGMAVGVDYSLFYLKRERQERAAGRTTIDAVAIAAETSGHAILVSGGAVIAALAGLFVLTDVTFNSLATGSIIVVAVAVLGSITVLPALLAKLGRWVDRPRVPLLWRLTRRTRTGSISGRLLGPVVRHPVAALVVASTVVLALAVPALSMKTHQASAETLPHDIPAVQTLRAITAAYPSEGTSAQVVVTGVDAPAAAAGLQELATAAGQDGFVTSGATVQASADGRTSVIDLALPYDESDDRATTAIERLRTSLVPQVFDSLDGAHVYVGGGAAESLDYATKQGQRMPILLGFVLLLTMVMMIAAFRSVLLGVVSTVLNLASVGVAFGILSIVFQHGVGESLLDFTSPGFVIDWIPVFVLVVLVGLSMDYHVFVLSRVRELVDGGLPVRQAVHRGIADTAGVITSAAAVMVSVFAIFATLSMLEMKMMGVGLAAAILVDATLIRLVVLPAVLVLLGDRAWPRRRRTPGPVVAPGQLPDQLLVPVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7A8</accession>
    <name>A0A0Q8V7A8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18995</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893385.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48983">
        <property type="protein sequence ID" value="KRC48983"/>
        <property type="gene ID" value="ASE19_18995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1912220at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002696">
        <property type="entry name" value="Membr_insert_effic_factor"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01809">
        <property type="entry name" value="YidD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01234">
        <property type="entry name" value="Haemolytic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="135" mass="14127" checksum="AFFE9EB67CC0C25B" modified="2016-01-20" version="1">MGLLRRKPKAGGSRQRRAGDCVDVGCTAAECFACNALVANVVLASVAGYPGTPRVSEGSAAARPLLRLIRSYQANVSAHRPAVCHLAPTCSHHAYDVLLRRGARGLPEVRRRLRACARAGRAARSARSGTGPAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7B9</accession>
    <name>A0A0Q8V7B9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895053.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53126">
        <property type="protein sequence ID" value="KRC53126"/>
        <property type="gene ID" value="ASE19_12155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1371060at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="135"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="190"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="235"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="262"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="293"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="343" mass="35488" checksum="A2BDB9FB808C2F8F" modified="2016-01-20" version="1">MSRAAVRSPTRAPLEQRIGELGASRAPFSAWVVLIGLGTAALVAAMVEVGPDWLGVTGSIVIATAYTSALAARTGGRPFVFGALALLCGLVAVLSDQDILLTGAAVSTSALAAVLGVMITVPASGFLASARECSVALLCAAVGAMATVGFEPAIQKERFEYVGLGLALLGALVLVYRLGAGLHGLGRRGLVVVAIGGVVLAATLLYAEMLRQYGSSGLVDELLTWVRWSRDHLGAFPRPIETVLGVPALAYGVHMRARRRQGWWVCAFGVAATSPTATALANPAVSVTEATLSVVYGLVVGLLVGWVLIRLDLALTGNRGRRSRVAEQAAAVRPEPGRFSPLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7V4</accession>
    <name>A0A0Q8V7V4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_12690</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895678.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53215">
        <property type="protein sequence ID" value="KRC53215"/>
        <property type="gene ID" value="ASE19_12690"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="18"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="117"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="190" mass="20880" checksum="EBC0D257DB2856C5" modified="2016-01-20" version="1">MLVPAAREGDQHAWDAIVDRFLPLVCAIVRGHRLSEADGDDVSQTVWLRLVEHLGNLREADALPGWIRTTTRNECLRLLAARGRVRPVDPQEDGAAGGLDAVEDDVAEADLLAAERRQLLREALDELPAGRRELLLLLLEDPPVGYEEISRRLGIPVGSIGPTRARALDQLRRTRSLRGLGPDLVGGERS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7W0</accession>
    <name>A0A0Q8V7W0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cytokinin riboside 5'-monophosphate phosphoribohydrolase</fullName>
            <ecNumber evidence="1">3.2.2.n1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12900</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>9-ribosyl-trans-zeatin 5'-phosphate + H2O = D-ribose 5-phosphate + trans-zeatin</text>
            <dbReference type="Rhea" id="RHEA:48564"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16522"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
            <dbReference type="ChEBI" id="CHEBI:87947"/>
            <dbReference type="EC" id="3.2.2.n1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + N(6)-(dimethylallyl)adenosine 5'-phosphate = D-ribose 5-phosphate + N(6)-dimethylallyladenine</text>
            <dbReference type="Rhea" id="RHEA:48560"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17660"/>
            <dbReference type="ChEBI" id="CHEBI:57526"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
            <dbReference type="EC" id="3.2.2.n1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the LOG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.n1" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895714.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53252">
        <property type="protein sequence ID" value="KRC53252"/>
        <property type="gene ID" value="ASE19_12900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1255127at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102682">
        <property type="term" value="F:N6-(Delta2-isopentenyl)-adenosine 5'-monophosphate phosphoribohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009691">
        <property type="term" value="P:cytokinin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005269">
        <property type="entry name" value="LOG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031100">
        <property type="entry name" value="LOG_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03641">
        <property type="entry name" value="Lysine_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00730">
        <property type="entry name" value="TIGR00730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0203">Cytokinin biosynthesis</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="194" mass="20463" checksum="209103E255C67693" modified="2016-01-20" version="1">MTSLRRIAVFCGSAPGHDEALARSAYDVGRGLAEHGIGLVYGAGGHGLMGSVSQGALDAGGEVIGVIPRSMVEREWGRDDLTELHVVETMHERKAMMAELADGFLCLPGGIGTLEEIIEVWSWRQLGFHPDPVCFYDVGGFWQPLLGALQGIVDAGFVRQAVLDDVVVTDDLATALAGLVGRAGATFVDKLSGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Y4</accession>
    <name>A0A0Q8V7Y4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14415</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896978.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53525">
        <property type="protein sequence ID" value="KRC53525"/>
        <property type="gene ID" value="ASE19_14415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="18"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="22099" checksum="5EE8A6F76249F5B1" modified="2016-01-20" version="1">MTDPARRYAGQNASERVAERRARLVAAGLAVMGERGIAGTTVRGVAEASGLAARYFYESFEGVEALQLAVFEEIAAEAATRAVAALGAAPDDPEARIRAVLGEMVDLFLEDPRKGRVALIDSVTSPVLGPRVLLESSRFAAMVAATASSGDPSSGVDDLPVDLRLTAQFLIGGVAHAIGAVLRGDVAADRDALVDVLVELFLAVTRDVIRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8G3</accession>
    <name>A0A0Q8V8G3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribonuclease P protein component</fullName>
            <shortName evidence="6">RNase P protein</shortName>
            <shortName evidence="6">RNaseP protein</shortName>
            <ecNumber evidence="6">3.1.26.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Protein C5</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rnpA</name>
        <name evidence="8" type="ORF">ASE19_14020</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 6">RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>Endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor.</text>
            <dbReference type="EC" id="3.1.26.5"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6">Consists of a catalytic RNA component (M1 or rnpB) and a protein subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the RnpA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.5" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897052.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53451">
        <property type="protein sequence ID" value="KRC53451"/>
        <property type="gene ID" value="ASE19_14020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2014742at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004526">
        <property type="term" value="F:ribonuclease P activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001682">
        <property type="term" value="P:tRNA 5'-leader removal"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00227">
        <property type="entry name" value="RNase_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000100">
        <property type="entry name" value="RNase_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020539">
        <property type="entry name" value="RNase_P_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33992">
        <property type="entry name" value="PTHR33992"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00825">
        <property type="entry name" value="Ribonuclease_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00188">
        <property type="entry name" value="rnpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00648">
        <property type="entry name" value="RIBONUCLEASE_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0819">tRNA processing</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="131" mass="13902" checksum="6150ABFEBB7D4EEF" modified="2016-01-20" version="1">MLAAGHRLTDPEGFRAASRRGQRAGTRTVVTHLLLPQEQQVVGMSGPEPQVGFVVSKAVGSAVVRNRVKRRLRHALRERIGAVPGGSVLVVRAQPAAAGISYQELVADLDRCLERVGVPSAPPAADPTEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8I2</accession>
    <name>A0A0Q8V8I2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_10075</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895164.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53612">
        <property type="protein sequence ID" value="KRC53612"/>
        <property type="gene ID" value="ASE19_10075"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1205196at2"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd16913">
        <property type="entry name" value="YkuD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.101.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005490">
        <property type="entry name" value="LD_TPept_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002477">
        <property type="entry name" value="Peptidoglycan-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036365">
        <property type="entry name" value="PGBD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036366">
        <property type="entry name" value="PGBDSf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038063">
        <property type="entry name" value="Transpep_catalytic_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01471">
        <property type="entry name" value="PG_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03734">
        <property type="entry name" value="YkuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141523">
        <property type="entry name" value="SSF141523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47090">
        <property type="entry name" value="SSF47090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359813" evidence="4">
        <location>
            <begin position="19"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="domain" description="PG_binding_1" evidence="5">
        <location>
            <begin position="123"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="YkuD" evidence="6">
        <location>
            <begin position="214"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="40"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="183"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="81"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="3">
        <location>
            <begin position="96"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="328" mass="35241" checksum="2FB5AC5A365C2557" modified="2016-01-20" version="1">MNTKARLARRLTLVTVLAALCSVLAYGVGYAVRGQALPWEGSSKTSAAPHDQRGGVRDGKGADPTPSGTPADEPATDPSGTPDDEPSSSQGIPDPTPSDEPDPTQEPGPPPAGPALLSPGDKGPEVRDLQARLKQIDWFSGDVTDNYGDVTAEAVRGFQAKRGFEATGVVDQRTLDRLHEMTREPSKAELTNQPPPGDGGNVPGPLDPRCTTGRVLCIDKSSRTLRWVVDGDVRKTVDVRFGSAELPTREGVFSIERKSRDHVSSIYHTPMPFAMFFSRGQAVHYSPDFAARGYNGASHGCVNVRDHEAVAWLFDQVVVGDKVVIYWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8K9</accession>
    <name>A0A0Q8V8K9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">FAD_binding_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_11135</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895181.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53628">
        <property type="protein sequence ID" value="KRC53628"/>
        <property type="gene ID" value="ASE19_11135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="153138at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033765">
        <property type="term" value="F:steroid dehydrogenase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008202">
        <property type="term" value="P:steroid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56425">
        <property type="entry name" value="SSF56425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_2" evidence="3">
        <location>
            <begin position="20"/>
            <end position="458"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="489" mass="51727" checksum="FFC3F1A48F46C7BC" modified="2016-01-20" version="1">MAIPAALPASELPHDAESFDVVVVGFGIAGGCAALEAARSGARVLLLEKAAVHGGTSSMSGGHFYLGGGTAVQQATGHEDSVEAMIGYLMASTKDPDPEKIRAYCEGSVAHFDWLEELGFQFERSYFPGKAVIQPGTEGLMFTGNEKVWPYRDEVTPAPRGHKVPVPGDTEGTRIVMDLLRDQVEKEGVEVRYETGATNLVVDGDPMTGAVVGLAWKSFDRTGVIRAGSVVVAAGGFVMNADMVARYTPALGVNLFTLGSTYDDGLGIRLGESVGAALENMEEPFITAPFYPPSSRCKGIIVNKHGRRFVAEDSYHARTSYHVLKEDDAVAYLIVDSEHLGEDHMPLVPLKDGFETLEEMEAGLGMPAGVLVETVTRYNEFAARGEDPELHKHPDWIAPQTAGPWAVLDLSLGVALYAGFTIGGMATTVDGEVRRTDGSVVPGLYAAGACAANIAQDGNGYCSGTQLGEGSFFGRRAGRHAAGVSPAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V904</accession>
    <name>A0A0Q8V904_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Nitrate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_10955</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895180.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53627">
        <property type="protein sequence ID" value="KRC53627"/>
        <property type="gene ID" value="ASE19_10955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1115239at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015205">
        <property type="term" value="F:nucleobase transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006043">
        <property type="entry name" value="NCS2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00860">
        <property type="entry name" value="Xan_ur_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="54"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="77"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="101"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="134"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="161"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="184"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="254"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="334"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="362"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="396"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="420"/>
            <end position="437"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="453" mass="46508" checksum="B476400AA538D664" modified="2016-01-20" version="1">MFKWEVVNPAPGEPVAPNQRLPWGRTIGLGAQHVVAMFGATFVFPIVMGLDANLAIMFSGICTIGFLLICSNKVPSYLGTSASFVAGVAAIRTQGGDSADVTGAILVAGLVLAAVGVLVHFAGAGLIHKILPPAVTGAVVMLIGFNLAPVVAKVYWPQDQWVALATAAFMVCAAVLLPGFWSRIAVFLALVFGFVISWIFDAVFGTINSVVPALGATATDHDRTWGWDAVGDAKWIGFPHGTLTDGVSVVHGPSFSLTFILLVLPGVIALIAENTGHVKAVAEMTGENLDPYMGRAIGADGLATAFASAFGGSPTTTYAENIGVMGATKVYSTAAYYVAGAVAILLGLCPKFGAIVNATPGGVLGGITVVLYGMIGLVGAKIWVENNVDFGNPVNMVGLAGGLIAGIGGVELTFSDDFKLGGIALGTIVVIVFFHAVKGRSETATSGEVTKRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9R7</accession>
    <name>A0A0Q8V9R7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_15060</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896472.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51405">
        <property type="protein sequence ID" value="KRC51405"/>
        <property type="gene ID" value="ASE19_15060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014325">
        <property type="entry name" value="RNA_pol_sigma-E_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02983">
        <property type="entry name" value="SigE-fam_strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="13"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="7">
        <location>
            <begin position="108"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="79"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC51405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="179" mass="19287" checksum="C9CFB6677DDCFDDF" modified="2016-01-20" version="1">MRPKPRDAEFEEFVRSNRSRLLGTATVLTAGDHHLAEDLVQGTLVRMYLAWGRATKRGGAAAYARRVLVNSFIDHRRRPSVSRETATAELPDHAGGPTTAADEPVDAELLAALSALPARMRAAVALRHVVDLSVEDTAELLGCSEGTVKSQTARGLAKLREVLPQRASVPPIPHEGDPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9U6</accession>
    <name>A0A0Q8V9U6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895533.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54101">
        <property type="protein sequence ID" value="KRC54101"/>
        <property type="gene ID" value="ASE19_08565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="138"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="197"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="228"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="255" mass="26496" checksum="1E84DC7470C4937E" modified="2016-01-20" version="1">MASAVEAAAKPTRALGDVLAMALDALVIMFTKRFSWREAVQQSWFIARVSLVPTLLVMLGFTLLVIFEVNLLLKDLGALDLSGGIAGIASVQQIGPFVTVVVVAGAGGTAMCADLAARTIREEIAAMQVLGIDPIQRLVVPRIVAAVLVTLVLNVLICAGGLAGGYFFSVYLQGVTPGAYVASIPLFTGIPELMFSMFKAFVFGLIAAIIACYRGLNVAGGSKGVGDAVNQAVVITVAVLVPVSLTISLIQFAVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA19</accession>
    <name>A0A0Q8VA19_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08990</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895606.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54174">
        <property type="protein sequence ID" value="KRC54174"/>
        <property type="gene ID" value="ASE19_08990"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="132" mass="13342" checksum="5493D314AC50426C" modified="2016-01-20" version="1">MTKVDTGGWVWTVVGAGYVQASGLLLVGLAADVLPGARGAVGVDLVASDSFRPWGIALVALGLVSFLGCWFVWLGQSYGPLSLVVAGTAGTVVLALVGSWVALVVPVAIAVGLLLLLVTPALDHFRSSEGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA30</accession>
    <name>A0A0Q8VA30_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sulfotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07845</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895410.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53979">
        <property type="protein sequence ID" value="KRC53979"/>
        <property type="gene ID" value="ASE19_07845"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037359">
        <property type="entry name" value="NST/OST"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10605">
        <property type="entry name" value="PTHR10605"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="321" mass="36418" checksum="DABD513527361325" modified="2016-01-20" version="1">MTREPRPDFLLVGAPKAGTSALHLALAAHPDVFVTTPKEPKFWLCEDAPPPHWGGPGDRHSQREWVWQAQAYADLFRPAPPHSVRGESTPFYLWHRGAQRRIADALPDVRLVAVVRDPIDRAYSNWMHLWSDGLETEADFETAFARQDERIAAGHAPFWRYRDLGLYGEQLRDLYKLVDPARVLIVRYRDIVDHPVETVDRTCRFLGIREGQVAGIPRDNSRPYVAPGWRPRVFGPAVRAGAWAGQFAAPEVWRRLSVPVVARLQNSDAHRPSLTPEQRERLIPAFADDIALLSDLTGEDFSDWLSTRDRGSFAERAGAQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA60</accession>
    <name>A0A0Q8VA60_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">o-succinylbenzoate synthase</fullName>
            <shortName evidence="4">OSB synthase</shortName>
            <shortName evidence="4">OSBS</shortName>
            <ecNumber evidence="4">4.2.1.113</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">4-(2'-carboxyphenyl)-4-oxybutyric acid synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">o-succinylbenzoic acid synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">menC</name>
        <name evidence="6" type="ORF">ASE19_10100</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 2-succinylbenzoate (OSB).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>(1R,6R)-6-hydroxy-2-succinyl-cyclohexa-2,4-diene-1-carboxylate = 2-succinylbenzoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:10196"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18325"/>
            <dbReference type="ChEBI" id="CHEBI:58689"/>
            <dbReference type="EC" id="4.2.1.113"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Quinol/quinone metabolism; 1,4-dihydroxy-2-naphthoate biosynthesis; 1,4-dihydroxy-2-naphthoate from chorismate: step 4/7.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Quinol/quinone metabolism; menaquinone biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the mandelate racemase/muconate lactonizing enzyme family. MenC type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.113" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894694.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52761">
        <property type="protein sequence ID" value="KRC52761"/>
        <property type="gene ID" value="ASE19_10100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="951991at2"/>
    <dbReference type="UniPathway" id="UPA00079"/>
    <dbReference type="UniPathway" id="UPA01057">
        <property type="reaction ID" value="UER00165"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043748">
        <property type="term" value="F:O-succinylbenzoate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009234">
        <property type="term" value="P:menaquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00470">
        <property type="entry name" value="MenC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036849">
        <property type="entry name" value="Enolase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029065">
        <property type="entry name" value="Enolase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013342">
        <property type="entry name" value="Mandelate_racemase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010196">
        <property type="entry name" value="OSB_synthase_MenC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041338">
        <property type="entry name" value="OSBS_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18374">
        <property type="entry name" value="Enolase_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13378">
        <property type="entry name" value="MR_MLE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00922">
        <property type="entry name" value="MR_MLE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51604">
        <property type="entry name" value="SSF51604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0474">Menaquinone biosynthesis</keyword>
    <keyword evidence="1 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MR_MLE" evidence="5">
        <location>
            <begin position="73"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="4">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="201"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="154"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="316" mass="33156" checksum="AA0BF52E492BA153" modified="2016-01-20" version="1">MRVLSIPMRTRFRGITVREVALLAGPNGWGEWSPFLEYPPEVAEPWLRCAEEAMAGDWPAPVRSSVPVNVTVPAVDPERAHAIVLAGGCRTAKVKVAEPGQTTADDEARLEAVRDALGPDGHVRVDANGGWSVDEAVAAIGLLDRAAGGLEYVEQPTATVEELALVRRRVAVPIAADESIRRAEDPYRVRDLEAADIAVLKVQPLGGVRACLEIAERIGLPVVVSSALETSVGIAAGVALAAALPSLPHACGLATVQLLTADVATSPLLPVDGALPVGAVAVDVPAMEVLAAAPDRVAHWEARLAAVRAVREDRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA97</accession>
    <name>A0A0Q8VA97_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15180</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896492.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51425">
        <property type="protein sequence ID" value="KRC51425"/>
        <property type="gene ID" value="ASE19_15180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="12"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="197" mass="21656" checksum="E846CE54501DBB4E" modified="2016-01-20" version="1">MTATTRTRLSPDERRTQLLELGFRLLATRSLDELSIDLLAEEAGISRGLLYHYFGTKLGFFEAVVQHAADDLYARTAPAPDGEPLERLLHSITGYVDYVIANQAGYRSLVKAASGSNDALRAIYETTFTALADRFFTADTGTLDLPDTPAVRLVIHAWQAMVEDLVLTWCETPAGLTRDDLIHVITGALPALIDHLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAB0</accession>
    <name>A0A0Q8VAB0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10360</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894742.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52809">
        <property type="protein sequence ID" value="KRC52809"/>
        <property type="gene ID" value="ASE19_10360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="8"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="192" mass="20538" checksum="40581412FBB3E3E9" modified="2016-01-20" version="1">MPDVTKVSEPRERLLSTATRLFYEEGINGVGVDRVLAEAAVTRATMYRHFPGKEALVVAYLEHEDAMIRGLFAAAAEQAATSDASPRDLLALVIDGVAEDATRLHTRGCPFINASAEFPDADGPVRGVVRRHRDWFRATLTELATAAGVDDPAATAASLVLLRDAMLVGSYLDGADVAADFRATARRVAGID</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBG4</accession>
    <name>A0A0Q8VBG4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15095</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896477.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51410">
        <property type="protein sequence ID" value="KRC51410"/>
        <property type="gene ID" value="ASE19_15095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1655870at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="163"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="212" mass="22783" checksum="6017303AC6AE60EC" modified="2016-01-20" version="1">METSPALAALTDQLQGEEYDVSEPLPGVLHVRGRFSNPERIALRAAADAGDLALAVWATSHHDDWALVCWERPELVTITQKGATPQRWRHRRIPATLRPDAQTFLEGASSPFDIVTRPKHQPTEAARELLARFGITDPPPPGWVPPVVEVPVVEVPVVRKTTVPAAGPGTKRASAPRAPKAPAKPVKPEPTVAVCPNCFMAIPATGVCDNCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBZ8</accession>
    <name>A0A0Q8VBZ8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase</fullName>
            <ecNumber evidence="4">2.3.1.117</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Tetrahydrodipicolinate N-succinyltransferase</fullName>
            <shortName evidence="4">THDP succinyltransferase</shortName>
            <shortName evidence="4">THP succinyltransferase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Tetrahydropicolinate succinylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">dapD</name>
        <name evidence="6" type="ORF">ASE19_04770</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>(S)-2,3,4,5-tetrahydrodipicolinate + H2O + succinyl-CoA = (S)-2-succinylamino-6-oxoheptanedioate + CoA</text>
            <dbReference type="Rhea" id="RHEA:17325"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15685"/>
            <dbReference type="ChEBI" id="CHEBI:16845"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="EC" id="2.3.1.117"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; LL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate (succinylase route): step 1/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homotrimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the type 2 tetrahydrodipicolinate N-succinyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.117" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894292.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54789">
        <property type="protein sequence ID" value="KRC54789"/>
        <property type="gene ID" value="ASE19_04770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1251912at2"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00019"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008666">
        <property type="term" value="F:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.60.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02122">
        <property type="entry name" value="DapD_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019875">
        <property type="entry name" value="DapD_actinobacteria"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032784">
        <property type="entry name" value="THDPS_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038361">
        <property type="entry name" value="THDPS_M_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026586">
        <property type="entry name" value="Type2_DapD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14602">
        <property type="entry name" value="Hexapep_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14789">
        <property type="entry name" value="THDPS_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03535">
        <property type="entry name" value="DapD_actino"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="1 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="4" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="THDPS_M" evidence="5">
        <location>
            <begin position="102"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="region of interest" description="Succinyl-CoA binding" evidence="4">
        <location>
            <begin position="249"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="region of interest" description="Succinyl-CoA binding" evidence="4">
        <location>
            <begin position="286"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-anhydride intermediate" evidence="4">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="158"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
            <note>ligand shared between trimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
            <note>ligand shared between trimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>succinyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="208"/>
        </location>
        <ligand>
            <name>succinyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="211"/>
        </location>
        <ligand>
            <name>succinyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="234"/>
        </location>
        <ligand>
            <name>succinyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="257"/>
        </location>
        <ligand>
            <name>succinyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>succinyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF14789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="313" mass="32031" checksum="84CE38F7EE7586C5" modified="2016-01-20" version="1">MTAAWGFGLTTYAADGETVLDTWFPAPALGDKPADAQAPADLVALEGADEARNVTRKVNLVEIADLGAAPADTVELWLRLHLLSHCLVAPHGQNLEGIFGLLTNVVWTSAGPCAVDGFELTRARLQAAGQHVTVYGVDKFPRLVDYVIPAGVRIADADRVRLGAHLAAGTTVMHEGFVNFNAGTLGTSMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGKQVISVGRRCLLGANAGIGISLGDDCVVEAGCYVTAGTKVTVVEPGKDARVIKAAELSGASNVLFRRNSVSGAIEAVPWQGEGIALNAALHAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC63</accession>
    <name>A0A0Q8VC63_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidase C51 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05155</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54853">
        <property type="protein sequence ID" value="KRC54853"/>
        <property type="gene ID" value="ASE19_05155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="190667at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007921">
        <property type="entry name" value="CHAP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05257">
        <property type="entry name" value="CHAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50911">
        <property type="entry name" value="CHAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359895" description="Peptidase C51 domain-containing protein" evidence="1">
        <location>
            <begin position="20"/>
            <end position="546"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase C51" evidence="2">
        <location>
            <begin position="59"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="546" mass="58256" checksum="F3E79CD9260D63F0" modified="2016-01-20" version="1">MVFVMRNRTVVMRWGTSVAASALFATLLVAVGIAVRVEAPMTRSAGVTDLCSGWSGCNSAGYSDAGYGAVSGRMYWNMYSGHNCTNYVAYRMIKAGMSTTRPWVGGGNASEWGLQMKNITDQVPNVGAVAWWGRYSNGSGSAGHVGYVEKVVSPTEIIISMDSWGGTFHWRRITKDSGRWPTGFIHFVDKTLTPKAAPAITGKPAVGQTLTTSNGTWVGAPTSYTYEWFADGRTTGVRTRTYVPKGADREKKITVKVQAARSGFTPATQVSAPTAAVVPGTFALQATPTVDGTLFVDDVLTAQPGTWSPEPQAMAWRWYADGKRIVNATETLTLTQDLVGREISVVAVARRAGYTAASGPRVVAGKVMVGTIETSRAFAVLGRRTIGETLTVRSGVFTPADATPSYQWLRDGVPIEGAVAPTYRLGDDDVASRISVQVNLTRKNYVPLSSTATTNGPVRSRAWIQVGAASRGGKAIVNVDVTARGMAPVTGRVRIGIGSWMRTVTLVDGKASVKVARTPGVWNVAVRFLGNAIVPTALRTTTVRVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC96</accession>
    <name>A0A0Q8VC96_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_05095</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54842">
        <property type="protein sequence ID" value="KRC54842"/>
        <property type="gene ID" value="ASE19_05095"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036779">
        <property type="entry name" value="LysM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359912" evidence="3">
        <location>
            <begin position="24"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="46"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="87"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="110"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="183"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="20828" checksum="D2C15EABF6B42E41" modified="2016-01-20" version="1">MNHAAAAVRRRAALLWLAVTATALGPVVLAGPAALALVREPAGAFADLLVQSCAAAALVATALLWLTTADVACRQLRTPGSCRRRVGPVRAALLAACGVAVVVGPARASTDTAGSPPSLAGLPLPDRPTGSGGSDRAPTSSRTVDVRAGDSLWSVAERALGPGAPAADVASYWRRVLIHNADAVGPDPDLVRPGLRLELPPHSTPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCH4</accession>
    <name>A0A0Q8VCH4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">XRE family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05570</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54922">
        <property type="protein sequence ID" value="KRC54922"/>
        <property type="gene ID" value="ASE19_05570"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="21"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="91" mass="10156" checksum="AA854AE6EC6049E5" modified="2016-01-20" version="1">MADKRVDDSWTSYARELGVNLQRARHAKGISQERVAHLAGIAGFTYQKYEKGESRPGTPMNPQLFTLLSLSQVLDVPLADLLPAFEPDLTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCJ6</accession>
    <name>A0A0Q8VCJ6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">DNA gyrase subunit B</fullName>
            <ecNumber evidence="10">5.6.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">gyrB</name>
        <name evidence="12" type="ORF">ASE19_13615</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="10">Heterotetramer, composed of two GyrA and two GyrB chains. In the heterotetramer, GyrA contains the active site tyrosine that forms a transient covalent intermediate with DNA, while GyrB binds cofactors and catalyzes ATP hydrolysis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="10">Few gyrases are as efficient as E.coli at forming negative supercoils. Not all organisms have 2 type II topoisomerases; in organisms with a single type II topoisomerase this enzyme also has to decatenate newly replicated chromosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the type II topoisomerase GyrB family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the type II topoisomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53379">
        <property type="protein sequence ID" value="KRC53379"/>
        <property type="gene ID" value="ASE19_13615"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034335">
        <property type="term" value="F:DNA negative supercoiling activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.670">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01898">
        <property type="entry name" value="GyrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002288">
        <property type="entry name" value="DNA_gyrase_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011557">
        <property type="entry name" value="GyrB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001241">
        <property type="entry name" value="Topo_IIA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013760">
        <property type="entry name" value="Topo_IIA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013759">
        <property type="entry name" value="Topo_IIA_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013506">
        <property type="entry name" value="Topo_IIA_bsu_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018522">
        <property type="entry name" value="TopoIIA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00204">
        <property type="entry name" value="DNA_gyraseB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00986">
        <property type="entry name" value="DNA_gyraseB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01751">
        <property type="entry name" value="Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00433">
        <property type="entry name" value="TOP2c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56719">
        <property type="entry name" value="SSF56719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01059">
        <property type="entry name" value="gyrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00177">
        <property type="entry name" value="TOPOISOMERASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 10 12" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="Toprim" evidence="11">
        <location>
            <begin position="472"/>
            <end position="586"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC53379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="695" mass="76260" checksum="E9280E9353C5DE83" modified="2016-01-20" version="1">MSTDDQAPQATEYDASAIQVLEGLEAVRKRPGMYIGSTGERGLHHLIWEIVDNAVDEALAGYCDVIKVSLNPDGSVTVVDDGRGIPTDTAPGQELPAATLALTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSDRLHLQVKNRGYLWEQEFSLGVPDYPLRQVRPLEEGERSGTTVTWWASPDIFETTDYTLETISARFREMAFLNKGLRIELVDARPKAEELAEAVEDGTASDVDGVADATASLGEVHAADVDGHKALEQVFQYERGLADYVDFLNKRKTPISPIIAAESETGDDAPNPMSLELAMQWQASSYNESVHTFANTINTPEGGTHEEGFRAALTSLVNRWGEEWGLIKKKEDRLTGDDIREGLTAIISLKISNPQFEGQTKAKLGNTEAKGFVQSVVNDQLGAWLEQNPAEGKEIIRKAQAAATARIAARKARDLARNRKGLLGGGGLPGKLRDCSSRSPEECEVFIVEGDSAGGSAVMGRDNRIQAILPIRGKILNVEKARIDKVLANQEVQAIISALGTGVHEEFGLEKLRYHKIVLMADADVDGHHINTLLLTLLFRFMRPLIEAGHVYLAQPPLYRIKWNKPHEHEFVYSDAERDAMMRDGLEQGKKLPKDAPIQRYKGLGEMNADELWDTTLNPDQRVLLQVTLEDAAQADEIFSILMGEDVEQRRSFIQRNAKDVRFLDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCQ2</accession>
    <name>A0A0Q8VCQ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">OHCU decarboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06155</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894432.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55022">
        <property type="protein sequence ID" value="KRC55022"/>
        <property type="gene ID" value="ASE19_06155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1777613at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006144">
        <property type="term" value="P:purine nucleobase metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018020">
        <property type="entry name" value="OHCU_decarboxylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017595">
        <property type="entry name" value="OHCU_decarboxylase-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036778">
        <property type="entry name" value="OHCU_decarboxylase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09349">
        <property type="entry name" value="OHCU_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158694">
        <property type="entry name" value="SSF158694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03180">
        <property type="entry name" value="UraD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0659">Purine metabolism</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OHCU_decarbox" evidence="2">
        <location>
            <begin position="7"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="171" mass="18085" checksum="D81521482C863EA7" modified="2016-01-20" version="1">MLIDEFNGLPDAEAAALLRTCVAIDSWVSTLAAGRPYVTAQDLLDVGRAQVVGWAPADVEAALADHPRIGERPVGGGASAAASRSEQAGVDAGDLDLAERLRAGNAAYEERFGRIYLVRAKGRSGEELLALLEQRLGNDPATELEVTRQQLGEIALLRLADLVGVDEGVLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCQ3</accession>
    <name>A0A0Q8VCQ3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_05305</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54875">
        <property type="protein sequence ID" value="KRC54875"/>
        <property type="gene ID" value="ASE19_05305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="5">
        <location>
            <begin position="225"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="211"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="31953" checksum="D50F3B3A83A85297" modified="2016-01-20" version="1">MSMTAELLPEAPYDGARLLRTLADFRAVGRSDVAFGGPVVSAGTALDITSLHGANTRSLQGLRVRSSYGLGGKALMIGRPVSVTNYYDARGITHQYDGPVRAEQLETVTALPIVVDRVPRMVVYLAHRTQVVLGDVWYDSFLPLVRKVERDIAVDDEVRRRLTALAAPPATPAPAVQLTRADLRDISDELADLAALVQDDALRQRLEEVRHRVDEGREPTPAQPRTQPPTGLAAREVDVLAHVALGQSNRQVAESLGLVESTVKSYLKNAMRKLHATNRVHAVRLAREAGVID</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCT0</accession>
    <name>A0A0Q8VCT0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06290</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894454.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55045">
        <property type="protein sequence ID" value="KRC55045"/>
        <property type="gene ID" value="ASE19_06290"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="16060" checksum="9355919CED58F13C" modified="2016-01-20" version="1">MTASIAANLSSAAVADTPQYGNDIAERFDGYNSCLAQVVEKPGFTGDTWEVILQQSLPAATQLPDHAGAEPSKEWTAFLELEEFLEAADWRCRGEVYNDHIEDVLDAVNDFADRNADEIAAIQEGWEAVVEHAEDLGFTGAPGSLDADG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDB0</accession>
    <name>A0A0Q8VDB0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">50S ribosomal protein L24</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rplX</name>
        <name evidence="7" type="ORF">ASE19_06530</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="3">One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 4">Belongs to the universal ribosomal protein uL24 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894489.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55083">
        <property type="protein sequence ID" value="KRC55083"/>
        <property type="gene ID" value="ASE19_06530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2040741at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06089">
        <property type="entry name" value="KOW_RPL26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01326_B">
        <property type="entry name" value="Ribosomal_L24_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005824">
        <property type="entry name" value="KOW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041988">
        <property type="entry name" value="KOW_RPL26/RPL24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003256">
        <property type="entry name" value="Ribosomal_L24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005825">
        <property type="entry name" value="Ribosomal_L24/26_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12903">
        <property type="entry name" value="PTHR12903"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00467">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17136">
        <property type="entry name" value="ribosomal_L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00739">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01079">
        <property type="entry name" value="rplX_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01108">
        <property type="entry name" value="RIBOSOMAL_L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 4 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="KOW" evidence="6">
        <location>
            <begin position="17"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="107"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00029550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="131" mass="14461" checksum="64265065573F5CC2" modified="2016-01-20" version="1">MAVRKKSEQDRKRPHLHVKKGDTVKVIAGKDKGAEGKIIKVLREEQRVIVEGVNRIKKHTKVVDQGGRAGTTGGIITTEAPIHVSNVMLVEGDGVTRTGNKRVEVTKRRPDGSEYTSTRSVRISRKTGKEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE72</accession>
    <name>A0A0Q8VE72_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Crp/Fnr family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_08195</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895473.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54041">
        <property type="protein sequence ID" value="KRC54041"/>
        <property type="gene ID" value="ASE19_08195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1596937at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018488">
        <property type="entry name" value="cNMP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012318">
        <property type="entry name" value="HTH_CRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13545">
        <property type="entry name" value="HTH_Crp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00419">
        <property type="entry name" value="HTH_CRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00889">
        <property type="entry name" value="CNMP_BINDING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51063">
        <property type="entry name" value="HTH_CRP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="2">
        <location>
            <begin position="11"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="domain" description="HTH crp-type" evidence="3">
        <location>
            <begin position="145"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="24718" checksum="033AB86ED3491A38" modified="2016-01-20" version="1">MDNDVLRQAPLFSALDDEAMAALRTSLATTRLRRGEVLFHEGDSGDKLYVVLEGKVKLGRTSSDGRENLLAIMGPGQMFGELSLFDPGPRSATVTAVTDAEFASLSHEDLLRWLEGRPMVARGLLTQLAGRLRKANDVVADLVFSDVPGRVAKALLDLADRFGRTADDGVHVHHDLTQEELAQLVGASRETVNKALADFASRGWLRLEPRSVVILDMERMSRRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF75</accession>
    <name>A0A0Q8VF75_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12295</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895080.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53153">
        <property type="protein sequence ID" value="KRC53153"/>
        <property type="gene ID" value="ASE19_12295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1536442at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011044">
        <property type="entry name" value="Quino_amine_DH_bsu"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50969">
        <property type="entry name" value="SSF50969"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359983" evidence="2">
        <location>
            <begin position="27"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="108"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="23101" checksum="65ABC5F100EB79F6" modified="2016-01-20" version="1">MNRLAIASVTAAAALGIAGGAGYALASGDDTGGSDVKVRDTTPVDASGPAGDGPLYFLHGTIHDGDSEVEADGVDADLVVAVEHDGDGYVLVSSGDTDALKAVHVADDGTTRPTGVPGEEEREAATDGESGPAAWAPRSPSGDLLLTGMLVDDGPPPSELVVRDAGTGEVVHRFDPGGYRLAAAWGADDATVYVATGSDGTAKVALRRCKVATGTCTTLLEAEGNLVLGSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFC5</accession>
    <name>A0A0Q8VFC5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_08855</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895659.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54227">
        <property type="protein sequence ID" value="KRC54227"/>
        <property type="gene ID" value="ASE19_08855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="7"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="125"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="232"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="390" mass="43055" checksum="535D9122FA5ED38C" modified="2016-01-20" version="1">MRGGFYTEDHEAYRASVREFVRREVEPHHLEWEDERLVPRSAWQAAGKNGILGLAVPEQYGGGGEPDFRYPMVVAEELAAIGATSYCLGLRLQDDIVLPYLLELCTDEQKQRWLPGAASGELVLAIAMTEPGAGSDLQGIRTTAVRDGDGWVLNGQKTFITNGINADLVVVFAKTDPDAGSRGFSLFVVERDDPGFSRGRKLDKVGLAGQDTAELVFEDVRVGAENVLGEVGQGLIYLMQRLPKERLSLAMQALASAEAAVRWTQDYVFDRTAFGQRVGDLQATRFELAELETEVEITRAYVQNAALALNEHTLTTAEASKAKLWATEMQVRVTSRCLQLFGGYGFMNEYPIGRAFRDSRVQTIYGGTSQIMKEIIGRDIAGRYAKDATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFL0</accession>
    <name>A0A0Q8VFL0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12975</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895727.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53265">
        <property type="protein sequence ID" value="KRC53265"/>
        <property type="gene ID" value="ASE19_12975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2150982at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="24787" checksum="70E5F6604DA95687" modified="2016-01-20" version="1">MSSLDDLKETLGAHAPEVDHDLAARPGAVAHRVTVVRRRRAAVAAGLAAAVVAGGSWYAVAGPQRDDHPPVVSGTEDRAPVDEAPTFPSEAGGYHYRAAMLAEPGERIFERSTVLPRDVQFAIHCTSADQVEAGPSMPWITVDVLGWQVLEVSCGKGGAPDDDPAAYLYGPKLEDGGATLVGRRTDADGTVRERRFAADRNITFTVRLTDKDGRDWTKPVDGLEMGIGIYGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG51</accession>
    <name>A0A0Q8VG51_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13855</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897078.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53425">
        <property type="protein sequence ID" value="KRC53425"/>
        <property type="gene ID" value="ASE19_13855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1414780at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="230" mass="24468" checksum="4011EE5F9F610552" modified="2016-01-20" version="1">MGSMVIEGASGSASPEALACAREVEAYFTGVIEALDVLRAGLDEVCRRPVLPAADLVAAAHPLTRDLLAGLPLFGGGFVAAPGFLADHHLYLAWWQGEEHQLLAQSTVSGSGDPVDYSRVEWYRIPAESGRPHVTGPFVDYVCSDEYMLTTTIPVEVDGRMVGVVGADTLLDTFESLMLDAVRDAGATVVNQNFRVVLSADPRVPTGRLVSPEQRGTSIPCGDLPFSVLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGP3</accession>
    <name>A0A0Q8VGP3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01960</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56622">
        <property type="protein sequence ID" value="KRC56622"/>
        <property type="gene ID" value="ASE19_01960"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="94"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="132"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="15388" checksum="14EED1D39812CC3A" modified="2016-01-20" version="1">MPATGDADGDGLSDADEVTAGTDAADADSDNDGLSDGAEVHSVGTDPNDPDTDDGGVTDGAEVANGTNPVDDPADDVPSSDRDGDGLTNDEELAQGTDPDDADSDDDGLTDGAEVNTHHTXXRHRQRRAHRPAGGAGHERLHHRAHQPAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH33</accession>
    <name>A0A0Q8VH33_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">IU_nuc_hydro domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02940</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892808.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56789">
        <property type="protein sequence ID" value="KRC56789"/>
        <property type="gene ID" value="ASE19_02940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1763387at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045437">
        <property type="term" value="F:uridine nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006139">
        <property type="term" value="P:nucleobase-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901564">
        <property type="term" value="P:organonitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.245.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015910">
        <property type="entry name" value="I/U_nuclsd_hydro_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001910">
        <property type="entry name" value="Inosine/uridine_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023186">
        <property type="entry name" value="IUNH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036452">
        <property type="entry name" value="Ribo_hydro-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12304">
        <property type="entry name" value="PTHR12304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01156">
        <property type="entry name" value="IU_nuc_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53590">
        <property type="entry name" value="SSF53590"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01247">
        <property type="entry name" value="IUNH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IU_nuc_hydro" evidence="4">
        <location>
            <begin position="6"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="63"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="311" mass="32500" checksum="6BFEF24774F408FA" modified="2016-01-20" version="1">MTRVPVVLDCDTGTDDAVAILLAALHPGLDLLGVTTSWGNHDVRHTTDNTLRVLDLVGRGASVGVHPGRNEPVRPRLTPLPSGRDDLPPTLDLPAPVSAAGTEAVEWLVATLRAATEPVAVVATGPLTNLAAALAADRSITGSVGRLVVLGGAHQRAGVTPYAERNVWCDPEAAADVLAAPFRDVLLVTMDATFSAPLTAADVARLRRLGTPAARATADLVDARIEWYRRDPSMAAAGGAPLHDPLAVAALVAPGLLTTLRATVQVERTDPVRYGATRFAAEVDERRGRTSVAVRADHDGYVDLLCTTLGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH47</accession>
    <name>A0A0Q8VH47_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Allophanate hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_03065</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892829.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56810">
        <property type="protein sequence ID" value="KRC56810"/>
        <property type="gene ID" value="ASE19_03065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1848526at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003833">
        <property type="entry name" value="CT_C_D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010016">
        <property type="entry name" value="KipI_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34698">
        <property type="entry name" value="PTHR34698"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02682">
        <property type="entry name" value="CT_C_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00796">
        <property type="entry name" value="AHS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="SSF50891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AHS1" evidence="4">
        <location>
            <begin position="1"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="210" mass="21797" checksum="2A50DD71FCE5C84A" modified="2016-01-20" version="1">MNVLPYGDRGLLLELADTAAVVAAAGALLADSRVAALVADVVPGARTVLLVARPGVSLDRLRAVVPGQEHLNSADSRALDQGPPQAEVVIPVVYDGPDLAEVADRTGLTEAEVVDAHTGRSWQVAFGGFAPGFAYLVGGDPRLQVPRREQPRTTVPAGAVGLAGEFSGVYPRASPGGWQLIGHTDVALWDLERDPPALLAAGTTVRFVEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH60</accession>
    <name>A0A0Q8VH60_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribosomal subunit interface protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01900</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892630.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56612">
        <property type="protein sequence ID" value="KRC56612"/>
        <property type="gene ID" value="ASE19_01900"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1665945at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.170.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038611">
        <property type="entry name" value="Arr_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021975">
        <property type="entry name" value="Rifampin_Arr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12120">
        <property type="entry name" value="Arr-ms"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Arr-ms" evidence="1">
        <location>
            <begin position="10"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="136" mass="14983" checksum="1F1F6C81151CB020" modified="2016-01-20" version="1">MSDVLDDGPFFHGTKADLGVGDLLTAGFRSNYRPEIVMNHIYFTALVDGAGLAAELAPGDAEPRVYVVEPTGAFENDPNVTDKKFPGNPTRSYRSVEPLRVLGEVTDWARLTPEALQAWHDRLAELRADERGEIIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH86</accession>
    <name>A0A0Q8VH86_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02510</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892734.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56716">
        <property type="protein sequence ID" value="KRC56716"/>
        <property type="gene ID" value="ASE19_02510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1672858at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="102"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="128"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="332" mass="34498" checksum="10166E2240784DB4" modified="2016-01-20" version="1">MSTPTYCTSCGHELGVGRFCTNCGKPVPGRHPEATPGLGATPAEVGATAGPTVPPPATQLPPQARYPLFADGEPTVVRAPDAPPAILPPPAMPAERRGTPGWLPWLVGLALLAVIAGLGGFLLASGGDDDKAADERSSDGPSAGAPSDDAAPPSEPEQPDSTGTGAPVAPPDPVDVVDLTTGIRAEVPAVAPPSRDSNNRPVRYSARKMWDGKARTTWRMPGDGTGQTITFDLGRDVVLTEVGMINGYAKVDGPNDWYAANRRIRTVQWEFDDGTRITQELGDDRQVQMAQIGAVATRTVTVHLLAVSEPGAGTAGRDFTAISEVRFLGTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHE8</accession>
    <name>A0A0Q8VHE8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02000</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892647.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56630">
        <property type="protein sequence ID" value="KRC56630"/>
        <property type="gene ID" value="ASE19_02000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="870586at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="142"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="166"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="188"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="218"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="280"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="312"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="349"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="382"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="589" mass="63192" checksum="7CA28BA6083BBD0D" modified="2016-01-20" version="1">MTGRFAAWRGAQGLAALGILLVTAVVRGWLLAGSYFNQDDFYMTGRAAESDLTLDYLTRDFAGHVNPLQQLTLWLVAHGAPYRWPVLVVGILLVNLLAVVLMWLILTRLLPGRWARVGLLAVFAWTPLTLVSTLWWSASMFLWPHVVCSLAAVWLLVRWKQEGRPVRHLLAILLVTAIGLLWHERAVLIPPLVFGVAVALADRATGWRKVTAALRDHAWLWGSMVALLGGFLFAHSRLTEVVGGETDADKLLGVTWSFLGRSAVPGLAGGPWTGEVNGGAVVPATWVTVVSLLLAALVLVLLLRGGGPARRWALAVLLGYVAADTALLLSGRAAFGSVIGLDPRYSADIPHAAVLCAALALRGGPAGLGLARLADLRRRRVVVAGLVAAYAVAAGFGTALLVPHFQNKDDRAFVEAYRGDLALDPTVVVFDELAPAELVLPLVGDDSRFSHIFGPLPENPAFDEPSPRLRMIGPDGHLRPLVFDGTVDAPPGPDGDCGYEITGIRKDVPFVLPVEGRLALRVQYYTQAEATVTVEAGDWSDEFLARRGPNEVWLVLPDLPGTVPSVDLTSDGDEPVCVTDVAVGLPVQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHG0</accession>
    <name>A0A0Q8VHG0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03750</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892943.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56926">
        <property type="protein sequence ID" value="KRC56926"/>
        <property type="gene ID" value="ASE19_03750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1817449at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041025">
        <property type="entry name" value="HNH_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18780">
        <property type="entry name" value="HNH_repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="132" mass="14276" checksum="9DB2851F6F417468" modified="2016-01-20" version="1">MRVPEYSDDQITADLAAAAADLGEPLTASSYDTWQRAHDAASPALLIRRFGSWNQACARAGVATNKTRSTSRRWSDDDVVAIVAAYLRAPGSTGSFADYSAWAKEQDGAPSGATLRQRFPWAEVKKRAEDAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHI2</accession>
    <name>A0A0Q8VHI2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">GDP-mannose 4,6-dehydratase</fullName>
            <ecNumber evidence="3 4">4.2.1.47</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">GDP-D-mannose dehydratase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">gmd</name>
        <name evidence="6" type="ORF">ASE19_07405</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>GDP-alpha-D-mannose = GDP-4-dehydro-alpha-D-rhamnose + H2O</text>
            <dbReference type="Rhea" id="RHEA:23820"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57527"/>
            <dbReference type="ChEBI" id="CHEBI:57964"/>
            <dbReference type="EC" id="4.2.1.47"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the NAD(P)-dependent epimerase/dehydratase family. GDP-mannose 4,6-dehydratase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.47" evidence="3 4"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895333.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53901">
        <property type="protein sequence ID" value="KRC53901"/>
        <property type="gene ID" value="ASE19_07405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="955232at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008446">
        <property type="term" value="F:GDP-mannose 4,6-dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070401">
        <property type="term" value="F:NADP+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019673">
        <property type="term" value="P:GDP-mannose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00955">
        <property type="entry name" value="GDP_Man_dehydratase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006368">
        <property type="entry name" value="GDP_Man_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43715">
        <property type="entry name" value="PTHR43715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01472">
        <property type="entry name" value="gmd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0521">NADP</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="5">
        <location>
            <begin position="6"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="207"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="331" mass="37077" checksum="3DADB9B15A2EF3BE" modified="2016-01-20" version="1">MTKRALITGITGQDGSYLAELLLSKGYEVHGLVRRSSTLNRSRIDHLNESADLHLHYGDLTDGVSLSNQIRDITPHEVYNLGAQSHVKVSFELPEYTASTDAVGTLRLLEAIRAAGIDCRFYQASTSEMFGATPPPQNESTMFYPRSPYGAAKLYSHWVTVNYREAYDLFAVSGILFNHESPRRGESFVTRKITLGVASIKLGIADHLDLGNLEAVRDWGYAPEYVEGMWRMLQHDEPQDFVLATEVGTTVREFCEYAFSHAGLNWEDHVRYDKSYERPTEVDALIGDASKARDVLGWRAQTHAKGLAELMVDSDIEHLGRLVQHKKEIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHN0</accession>
    <name>A0A0Q8VHN0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_04965</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894262.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54819">
        <property type="protein sequence ID" value="KRC54819"/>
        <property type="gene ID" value="ASE19_04965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1809199at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="9"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="41"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="73"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="134"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="159"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="197"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="233"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="266"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="290"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="333"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="355"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="199"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="394" mass="40455" checksum="679362861CFE825D" modified="2016-01-20" version="1">MVPIARRRLAVAAAFATQGFVFIGLTTRLPDIKDRWDLGELGISGVLLGIVLLAGLGSVVAERLAPRTSSAHLLRAGLVAVGAGAALMLAAPAWAAYLLGVGVYGVALGVVDAATNMQAVAIERQYGRPILPSFHGGWTLGGLLGAGTTLAMADLDLGWSALIGVVAVAMAGAGFLPREQSAAFDHAAGGELPGVPWRPILMVGLGMVVFYMVDTAAQTWGAVYIDEVLDAPSRWVALATLPYLVASLLVRLAGDHLVQRYGAVPVLRVGAVVASAGLVVVTVAPTWPVAVLGFTIVGTGISVVAPLSFSAAARIAGGSVERVDAVIARFNQFNYVGGLLGAVLTGVVGQDELRYGFVVPTVLVLTLLPLARWFASAAATRDAEVSPGTPSVRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHW2</accession>
    <name>A0A0Q8VHW2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Phenylalanine 4-monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_03995</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the biopterin-dependent aromatic amino acid hydroxylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892989.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56972">
        <property type="protein sequence ID" value="KRC56972"/>
        <property type="gene ID" value="ASE19_03995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1492162at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016714">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009072">
        <property type="term" value="P:aromatic amino acid family metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.800.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001273">
        <property type="entry name" value="ArAA_hydroxylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036951">
        <property type="entry name" value="ArAA_hydroxylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036329">
        <property type="entry name" value="Aro-AA_hydroxylase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019774">
        <property type="entry name" value="Aromatic-AA_hydroxylase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11473">
        <property type="entry name" value="PTHR11473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00351">
        <property type="entry name" value="Biopterin_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00372">
        <property type="entry name" value="FYWHYDRXLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56534">
        <property type="entry name" value="SSF56534"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51410">
        <property type="entry name" value="BH4_AAA_HYDROXYL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 8" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BH4_AAA_HYDROXYL_2" evidence="7">
        <location>
            <begin position="1"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51410"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC56972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="298" mass="33258" checksum="07C19DF5B59DE7D6" modified="2016-01-20" version="1">MFEEGQYFAPVTADQDGSLKVHLGADHPGFADPAYRARRDALATLASNWRPGTPAPIAEYTQDEHRVWQVVSEALITKHRAYACREFLDGKESLGLPIDRIPQLAEVSDWLAPLTGYRYQPAAGLVPLREFYGSLADKAFWSTQYVRHHSVPLYTPEPDVLHEVVGHGNTLANPRFTALYELAGQASRRVRSTEALEFVSKVFWFTLEFGVLWEQGELKAYGAGILSSPGEIEAFRGMTIRPLDIGEMGSMTYDITDYQNVLYVADSFSQVEDVVGSFWADCTDESIARLAARHPAHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHZ4</accession>
    <name>A0A0Q8VHZ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Phosphopeptide-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_05435</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894182.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54899">
        <property type="protein sequence ID" value="KRC54899"/>
        <property type="gene ID" value="ASE19_05435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1632705at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1060.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025874">
        <property type="entry name" value="DZR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038587">
        <property type="entry name" value="L40e_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12773">
        <property type="entry name" value="DZR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00240">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="FHA" evidence="6">
        <location>
            <begin position="167"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="28"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="36"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="26691" checksum="D04FCDC8CF509B14" modified="2016-01-20" version="1">MSSVCPSGHDSASDDYCDVCGLPIPAGSSTPAPAADAPAPADPPAAEPAPATTACPNCQASNPPNALFCEACGYDFTTGSMPRPVTPPTIESVLDLGAPSSGAAADAGASPAATGPVAPATPVAPPLTDGWVAEVWIDPDWYADQESIDPLPSAGVPVVVPLRTTSILVGRTSRSRGIHPDIDLGADNGISRRHCQLTTDGTRWWVEDLGSSNGSYLGSALGPLPKTPVPPGEKREIGPDDRVYLGAWTRIVIRKAQPGEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI83</accession>
    <name>A0A0Q8VI83_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD(P)-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03725</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893093.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57060">
        <property type="protein sequence ID" value="KRC57060"/>
        <property type="gene ID" value="ASE19_03725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1616572at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008030">
        <property type="entry name" value="NmrA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05368">
        <property type="entry name" value="NmrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NmrA" evidence="1">
        <location>
            <begin position="17"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="31022" checksum="0AFE198DB09F8018" modified="2016-01-20" version="1">MARREGPDLSLSLLGTTGSTGALGRLVARALSEHGLEQRLLVRDPARAPELAGASVARTSYADAELARASLEGVTTLFMVSGAEAADRLDQHRTFIDAAAAAGVQHVVYTSFLGAAEDCTFTLGRDHWATEEHLRASGMASTFLRDAFYLDFLPDLVGEDGVIRGPAGEGRVAAVTRADIARSAVAVLTDPAPYAGTTWDLTGPEALTFTEVAALLSAHTGRPVTFHDETVEEAYASRLRWPAPQWQYDAWVSTYTAIAHGEMAGVTDHVLRLTGRAPTGLASYLSKQEKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIH9</accession>
    <name>A0A0Q8VIH9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Peptidase_M15_4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04100</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893008.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56991">
        <property type="protein sequence ID" value="KRC56991"/>
        <property type="gene ID" value="ASE19_04100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="585235at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009045">
        <property type="entry name" value="Hedgehog_sig/DD-Pept_Zn-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039561">
        <property type="entry name" value="Peptidase_M15C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13539">
        <property type="entry name" value="Peptidase_M15_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55166">
        <property type="entry name" value="SSF55166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360071" description="Peptidase_M15_4 domain-containing protein" evidence="2">
        <location>
            <begin position="24"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M15_4" evidence="3">
        <location>
            <begin position="335"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="41461" checksum="AA764C633B579DC8" modified="2016-01-20" version="1">MDTRRRLLSVGLACVLLGSGCTGSPHPGTSPPSTPSGTSTGPAVVAPADVAMARPGPFESTGDTPDVLVQSTGPLGAATAARVAATAGVARTEQFSLATFYREGEAVTYAAVDPATFRQFTPGPTAVLDALWDRIADGEIGLRPDLRESLAGPGDFVTLGNDDDAQQAHIAAYAPLVDRSPIGAVLNERWVDRLHLPRGNALFVSTRFGAAGPVVRRLRRVLGPTASVSLLAPSLVPDQALSAVLTGGPVAGAVGSFTYTAHRDGTVSPEPRWVREHIRTEPVPVLGTVTCNAAMLPALRAALTRVAEAGLAAQVHADEYGGCYVPRFIDKDPARGLSFHTFGTAIDLNVPGNRRGTAGAIDRRVVAIFVRCGFAWGGTWRFTDPMHFELVALRSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIR6</accession>
    <name>A0A0Q8VIR6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Nudix hydrolase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_08220</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54209">
        <property type="protein sequence ID" value="KRC54209"/>
        <property type="gene ID" value="ASE19_08220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039121">
        <property type="entry name" value="NUDT19"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12318">
        <property type="entry name" value="PTHR12318"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="6">
        <location>
            <begin position="26"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="285" mass="30860" checksum="28D8622A16ECB64A" modified="2016-01-20" version="1">MPPVPLPEHLADVAREYADGTRLAADPRDAATVVLQRPGADGAPEVYLLRRHVTMDFAGGMCVFPGGGVDPRDYDHEVAWAGPTPAEWAARLGTTEDVARALVCAAVRETFEESGVLLAGTSTDDVVADTTGADWEADRVALESRDLSLTDFLTQRGLVLRTDLLGIWSGWLTPVFEPKRYRTWFFVAQLPEGQITRDVSTESSEVVWLPAAEAADQADRGELAMLPPTYLTCLEIGTLGSVDKVLAASADRSVTMFMPEVEPLGDGFTLSMPDELRPMVAARRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIW5</accession>
    <name>A0A0Q8VIW5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Penicillin amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_06885</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="5">Binds 1 Ca(2+) ion per dimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S45 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895241.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53810">
        <property type="protein sequence ID" value="KRC53810"/>
        <property type="gene ID" value="ASE19_06885"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017000">
        <property type="term" value="P:antibiotic biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.439.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014395">
        <property type="entry name" value="Pen/GL7ACA/AHL_acylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043147">
        <property type="entry name" value="Penicillin_amidase_A-knob"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023343">
        <property type="entry name" value="Penicillin_amidase_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043146">
        <property type="entry name" value="Penicillin_amidase_N_B-knob"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002692">
        <property type="entry name" value="S45"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34218">
        <property type="entry name" value="PTHR34218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01804">
        <property type="entry name" value="Penicil_amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001227">
        <property type="entry name" value="Pen_acylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0865">Zymogen</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="223"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="279"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="357"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="360"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR001227-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001227-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="859" mass="93230" checksum="C10CAC916945A31A" modified="2016-01-20" version="1">MAGIAVLLVLALVAGVVTAVVMVRRPWPETSGELELSGLEGEVRVVRDDAGIPQVYADSMHDLMLAQGFVHAQDRFFEMDVRRHATAGRLSELFGEDGLESDLVVRTLGWRRVAEQELTMLRPATRSALDAYAEGVNAYLAGRSTSEMALEYSLLGISGLDYTPEKWSAVDSIAWLKAMAWDLRGNLDEEIGRALTTATVGARATEELYPSYPFGEHPPIVDQGGLRGEEFDQDATSGDGGPLQRPAPGGHRAVAALAGVRDVLAGVPALLGKGDGIGSNSWVVDGDHTSTGWPILANDPHLGISLPGVWAQVGLHCREVTPDCPMDVSGFSFSGVPGVVIGHNADIAWGFTNLGADVTDLYVERVADDTWQYDGRTRALDVRDERIEVRDGDPVDITVRSTDHGPLLSDLTAVDERLDEVDLTTDGLVDEVDQVGDAEEDTDSAWETGVSLAWTALEPHPTADALLALDTADDWPSFRAALRSFAAPGQNVVYADTQGHIGYQATGLVPIRRAGNDGRTPAAGWRADTGWTGRHVPYDALPNVLDPASGIIATANQAVIDPRRYPPFLTEDWDQGYRSTRINQLLAADDELSVDQMGSIQLDDWSAIAEVLTPYLLKVGLPHGYYSDGQRLLRSWNHRQGADSAAAAYFNVVWREVLERTFADELPDVLEPDGSDRWFAVVASILPRTANHWWDDVETDDQVEDRDDVLREAMIAARDELTARESPNADEWTWGALHELELRSATLGESGIGPVEWLFNRGPWEVGGGGSLVDATAWDAREGYDVTTAPSMRMVVPMDDLDAARWINLTGASGHAFNPHYTDQTDLWARGETLPWAFSADAVEDAADDVLVLTDGSAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJG5</accession>
    <name>A0A0Q8VJG5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">PLDc_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_13005</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895733.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53271">
        <property type="protein sequence ID" value="KRC53271"/>
        <property type="gene ID" value="ASE19_13005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1923080at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027379">
        <property type="entry name" value="CLS_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13396">
        <property type="entry name" value="PLDc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="domain" description="PLDc_N" evidence="9">
        <location>
            <begin position="12"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="65"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="92"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="126" mass="14942" checksum="433C7FB9F4851266" modified="2016-01-20" version="1">MLRFLPYTLVGLLWLFCLIDVITSREDSVRNLAKTWWLLIVLFFPLAGSIAWFVAGRPVVERPMTRGQGAAPGFPEYERRGRFAAEDPEKDEDFLRRVRERAEEQRKRYEAQRREQERAQEPDVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJP5</accession>
    <name>A0A0Q8VJP5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23550</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893942.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57736">
        <property type="protein sequence ID" value="KRC57736"/>
        <property type="gene ID" value="ASE19_23550"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030001">
        <property type="term" value="P:metal ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006127">
        <property type="entry name" value="ZnuA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01297">
        <property type="entry name" value="ZnuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360104" evidence="2">
        <location>
            <begin position="25"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="126"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="32778" checksum="751D1683D12CD188" modified="2016-01-20" version="1">MRFASAVAVLSTAALLASGCSAFSESGGTSSGGSGPTVTAAFYPLAWLTERVSEGTDTDVELLTRPGSEPHDLELDVAKTAQIADADLVVYEAGFQPAVDDSVAQNATGDTLDVAALADLVPVDESAAEHEEHADEDEHDHDHGDLDPHFWQDPLRVAAVSDAVAGELASIDEKNADTYTANAAALRKQLEALDASYTTGLADCTRDTIVVSHDAFGYLEKYGLHIAPIVGLSPDAEPTAAVLAQLQDLVKEEGITTVFSEPLEPALGDGLATDLGLTNGVLDPIEGLSDADSDADYLSLMKDNLVALQAANGCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL76</accession>
    <name>A0A0Q8VL76_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MerR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05970</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894085.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54989">
        <property type="protein sequence ID" value="KRC54989"/>
        <property type="gene ID" value="ASE19_05970"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00552">
        <property type="entry name" value="HTH_MERR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="5"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="127" mass="14173" checksum="1D5FF486C76A0BE9" modified="2016-01-20" version="1">MTGVTIAEAAETVGLSADTLRYYEKDGLLLRPVPRSSSGHRSYGEPDLRWIKLVTCLRATGMPIRDVRRYAALVRDGEGNEEERLALLHAHRDSVLRELAEVTAHLGAIDHKIGIYEHKLELVEQSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLC0</accession>
    <name>A0A0Q8VLC0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05995</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54993">
        <property type="protein sequence ID" value="KRC54993"/>
        <property type="gene ID" value="ASE19_05995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2072860at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="178" mass="19571" checksum="F73BD29E98AC706A" modified="2016-01-20" version="1">MERYRSGGTISGVVGMAAVVLLLGWGLVSNNDGMAPWAFPALVLGGVLVWAILLRPSIALHRDELELRNVLHTRFVPFARITAFRIDQMTVVEVDGKRYVGSGFGRSRLTINRDAKVGPDAPSDRHSVGWLVEEKVRRRMRPHDAVAEPGQVRREWAWAEIGALAVLALATLVTLLVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN26</accession>
    <name>A0A0Q8VN26_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Acetyl-CoA acetyltransferase</fullName>
            <ecNumber evidence="5">2.3.1.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_22920</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.9" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892569.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58917">
        <property type="protein sequence ID" value="KRC58917"/>
        <property type="gene ID" value="ASE19_22920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="330994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003985">
        <property type="term" value="F:acetyl-CoA C-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="3">
        <location>
            <begin position="9"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="4">
        <location>
            <begin position="285"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="1">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="383"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC58917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="426" mass="44704" checksum="7EA923AC2470F26C" modified="2016-01-20" version="1">MTETVRRAAVLGGNRIPFARSNGAYATASNQEMFTAALDGLVARFGLEGERIGEVAGGAVLKHSRDFNLVRESVLSTRLAPETAGVDLQQACGTGLQAINYIANKIKLGQIDSGIGGGVDTTSDAPIAISEKLRKKLLKVNSAKTTADRLKILASIRPGDIGIAAPSNGEPRTGLSMGDSQALTALEWQITREAQDELAVTSHHNLAASYDEGWQDDLVTPFRGLERDNNLRGDSSLEKLAKLKPVFGKGEAATMTAANSTPLTDGASAVLLGSEEWAAEHGLEVLAYFVDSEVAAVDFVNGAEGLLMAPAYAVPRMLARNGLTLQDFDFYEIHEAFASQVLSTLAAWESPVFCKERLGLDAPLGSIDRSKLNVKGSSLAAGHPFSATGGRIVANTAKLLKANGGGRALISVCAAGGQGVVAIMER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN64</accession>
    <name>A0A0Q8VN64_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892980.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56963">
        <property type="protein sequence ID" value="KRC56963"/>
        <property type="gene ID" value="ASE19_03950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2071352at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015627">
        <property type="term" value="C:type II protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015628">
        <property type="term" value="P:protein secretion by the type II secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000983">
        <property type="entry name" value="Bac_GSPG_pilin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00813">
        <property type="entry name" value="BCTERIALGSPG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="114" mass="12072" checksum="F13FEDAEBA0B326B" modified="2016-01-20" version="1">MRRTIDRLQAARRDQRGFTLIELLIVIIILGILAAIVVFSVRGITDKGDESACKIEFRTVNTAIEAYYAENGSEAADLDALVTGGFLKGEGGVYSGKYVTGLGGTPVEATGTAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNI0</accession>
    <name>A0A0Q8VNI0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">N-acetyl-gamma-glutamyl-phosphate reductase</fullName>
            <shortName evidence="4">AGPR</shortName>
            <ecNumber evidence="4">1.2.1.38</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">N-acetyl-glutamate semialdehyde dehydrogenase</fullName>
            <shortName evidence="4">NAGSA dehydrogenase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">argC</name>
        <name evidence="7" type="ORF">ASE19_23290</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the NADPH-dependent reduction of N-acetyl-5-glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>N-acetyl-L-glutamate 5-semialdehyde + NADP(+) + phosphate = H(+) + N-acetyl-L-glutamyl 5-phosphate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:21588"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29123"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57936"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.2.1.38"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 3/4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.38" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC59004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893031.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59004">
        <property type="protein sequence ID" value="KRC59004"/>
        <property type="gene ID" value="ASE19_23290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="951261at2"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00108"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003942">
        <property type="term" value="F:N-acetyl-gamma-glutamyl-phosphate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00150">
        <property type="entry name" value="ArgC_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023013">
        <property type="entry name" value="AGPR_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000706">
        <property type="entry name" value="AGPR_type-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000534">
        <property type="entry name" value="Semialdehyde_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012280">
        <property type="entry name" value="Semialdhyde_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01118">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02774">
        <property type="entry name" value="Semialdhyde_dhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00859">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01850">
        <property type="entry name" value="argC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01224">
        <property type="entry name" value="ARGC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0521">NADP</keyword>
    <keyword evidence="3 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Semialdhyde_dh" evidence="6">
        <location>
            <begin position="7"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="active site" evidence="4 5">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="351" mass="35538" checksum="EB7BC67E042ED047" modified="2016-01-20" version="1">MHMSKVRVAVAGASGYAGGEVLRLLLGHPGVEIGALTAASNAGERLGALQPHLVPLAERVLEPTTVDVLAGHDVVFLGLPHGQSGALAAELTDLDADVVVIDCGADFRLDDAAAWERFYGSAHAGTWPYGLPELPGNRDALRGTRRVAVPGCYPTVSSLTLAPAVAAGLVVPDVVVVAASGTSGAGKAAKTHLLGSEVMGNTSAYGVGGVHRHTPEITQNLGRLVPGGPESVKVSFTPLLVPMSRGILATCSAPLAGPLTTEEAHAAYVKAYADEPFVHVLAPGQWPQTQAVLGSNAVHLQVAVDEAAGRLVAVGAVDNLAKGTAGAAVQCMNLALGLEETTGLTTVGLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ09</accession>
    <name>A0A0Q8VQ09_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">Phosphoglucosamine mutase</fullName>
            <ecNumber evidence="6 8">5.4.2.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">glmM</name>
        <name evidence="13" type="ORF">ASE19_00380</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 8">
            <text>alpha-D-glucosamine 1-phosphate = D-glucosamine 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:23424"/>
            <dbReference type="ChEBI" id="CHEBI:58516"/>
            <dbReference type="ChEBI" id="CHEBI:58725"/>
            <dbReference type="EC" id="5.4.2.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="PTM">
        <text evidence="6">Activated by phosphorylation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the phosphohexose mutase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.2.10" evidence="6 8"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896810.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59530">
        <property type="protein sequence ID" value="KRC59530"/>
        <property type="gene ID" value="ASE19_00380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1265792at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008966">
        <property type="term" value="F:phosphoglucosamine mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05802">
        <property type="entry name" value="GlmM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01554_B">
        <property type="entry name" value="GlmM_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005844">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016055">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I/II/III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005845">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005846">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005843">
        <property type="entry name" value="A-D-PHexomutase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036900">
        <property type="entry name" value="A-D-PHexomutase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016066">
        <property type="entry name" value="A-D-PHexomutase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005841">
        <property type="entry name" value="Alpha-D-phosphohexomutase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006352">
        <property type="entry name" value="GlmM_bact"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02878">
        <property type="entry name" value="PGM_PMM_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02879">
        <property type="entry name" value="PGM_PMM_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02880">
        <property type="entry name" value="PGM_PMM_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00408">
        <property type="entry name" value="PGM_PMM_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00509">
        <property type="entry name" value="PGMPMM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53738">
        <property type="entry name" value="SSF53738"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55957">
        <property type="entry name" value="SSF55957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01455">
        <property type="entry name" value="glmM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00710">
        <property type="entry name" value="PGM_PMM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 6 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PGM_PMM_I" evidence="10">
        <location>
            <begin position="3"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_II" evidence="11">
        <location>
            <begin position="158"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_III" evidence="12">
        <location>
            <begin position="262"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_IV" evidence="9">
        <location>
            <begin position="387"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="active site" description="Phosphoserine intermediate" evidence="6">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <feature type="binding site" description="via phosphate group" evidence="6">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="245"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="247"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="Phosphoserine" evidence="6">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC59530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="452" mass="47299" checksum="8374EB9E61AC65E3" modified="2016-01-20" version="1">MPRIFGTDGVRGLANDKLTAELALDLGVAAARVLVEHGDFDRPRPLAVVGRDTRISGQFLEHAVVAGLAAAGVDVLRLRVLPTPGVAYFTDALNADVGVVISASHNPMPDNGIKFLARGGVKLDDALEREIEEHLAQDWDRPTGAAVGRVQPYGPTVEEYAAHLVGTLDDPDTQPLAGLTVVLDCAHGAASEVGPHALRLAGATVITIGAEPDGLNINDGCGSTHLEPLRKAVLEHGADAGFAVDGDADRCLAVDHAGEVVDGDQIMGILALALKESGRLVDDTLVATVMSNLGLVQAMAAHGVTVRQTAVGDRYVLEDMRAGGYSLGGEQSGHVILRDHATTGDGLLTTLHVLQRMVRSGRSLQELAGVMTRLPQVLVNVSGVDRTRTDDEVLLAAVAEAESELGTTGRILLRPSGTEPLVRVMVEAPTAEQAEAVANDLADVVRERLSVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQE4</accession>
    <name>A0A0Q8VQE4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00850</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896737.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59604">
        <property type="protein sequence ID" value="KRC59604"/>
        <property type="gene ID" value="ASE19_00850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041581">
        <property type="entry name" value="Glyoxalase_6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18029">
        <property type="entry name" value="Glyoxalase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyoxalase_6" evidence="1">
        <location>
            <begin position="8"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="130" mass="14686" checksum="4CCA4C0192F55B84" modified="2016-01-20" version="1">MTSFISHTTVDCANAYELSEWWKPVLGYVDIDGDPNLPGHVECMIRDPHTGHQVLFIEVPEAKSVKNRVHFDLRPRERTRDEEIAWLLEYGATEVADHRGIHGPGSGWVTFADPEGNEFCVVRSIAELEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQL6</accession>
    <name>A0A0Q8VQL6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Phospho-2-dehydro-3-deoxyheptonate aldolase</fullName>
            <ecNumber evidence="3">2.5.1.54</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_02515</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>D-erythrose 4-phosphate + H2O + phosphoenolpyruvate = 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14717"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16897"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58394"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="EC" id="2.5.1.54"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 1/7.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the class-II DAHP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.54" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892735.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56717">
        <property type="protein sequence ID" value="KRC56717"/>
        <property type="gene ID" value="ASE19_02515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1371606at2"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00084"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003849">
        <property type="term" value="F:3-deoxy-7-phosphoheptulonate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002480">
        <property type="entry name" value="DAHP_synth_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21337">
        <property type="entry name" value="PTHR21337"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01474">
        <property type="entry name" value="DAHP_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01358">
        <property type="entry name" value="DAHP_synth_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU363071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="445" mass="48977" checksum="D7AD1BC270D4EA43" modified="2016-01-20" version="1">MSTLPSLEQLHAIGAKQQPTYDDPAALAAVVDRLRTLPPLVFAGECDELKAKIAAASRGEAFLLQGGDCAETFVDATADNTRNKLRVLLQMAVVLTYAASVPVVKVGRLAGQYAKPRSSNDETRDGVTLPAYRGDAVNGFEFTPESRRHDPQRLLDVYHASASTLNLVRAFTTGGYADLRQVHTWNSEFVRNSPVGQHYEAMAAEIDRALTFMQAIGADPDEFHRVDFYSSHEALLMEYEHAMTRIDSRTEQPYNVSGHMVWIGERTRQLDGAHVEYFSHIRNPIGCKLGPTATADDALALAARLNPTNEPGRLTFITRFGAGKIRDGLPPLVEKVTAEGVDVAWVCDAMHGNTFEASNGYKTRRFEDVLDEVLGFFEVHRALGTVPAGILVENTGDDVTEIIGGGEQLDELGLAHRYESVVDPRLNRVQSLELAFQVAENLRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQV8</accession>
    <name>A0A0Q8VQV8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917912.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59590">
        <property type="protein sequence ID" value="KRC59590"/>
        <property type="gene ID" value="ASE19_00765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1438033at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="160"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="180" mass="18240" checksum="529CE1A4799B4EE3" modified="2016-01-20" version="1">MSENATGATGAWSYRTGDWYAVFGASATVLLPASQKDQVVALWALVDGGAAFDEVLDGLLASGLSRLPGFVLVSTDEGPTRVLLRGAGVTASLSADGEEVELDGAASHTWVERSVEGVTALGIALPPVDGAEESAESADLPVVTGLVRVGRVDRPAVLPAAPAAVAEPEPIAEPVSGPXR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQZ0</accession>
    <name>A0A0Q8VQZ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidase</fullName>
            <ecNumber evidence="2">3.5.1.4</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01430</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.4" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59822">
        <property type="protein sequence ID" value="KRC59822"/>
        <property type="gene ID" value="ASE19_01430"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004040">
        <property type="term" value="F:amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043864">
        <property type="term" value="F:indoleacetamide hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidase" evidence="1">
        <location>
            <begin position="25"/>
            <end position="475"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="499" mass="54403" checksum="5A1E2A3B83D9F8CD" modified="2016-01-20" version="1">MGRIVDWSAAELSVAIRRQEVTCVEVMTAYLDRIDDVNPAVNAIVQLRPRAELLAEAAEKDRLLRNGTYQGWMHGFPHAVKDQWNVKGMTTSVGFFGQPGVPVAPATTDALLVERIRKAGAIFIGKTNLPELGLGSHTYNKVYGTTGNAYDPTKSAGGSSGGAAVAVALRMLPVADGSDFFGSLRNPPGWNNVLGLRPSFGRIPELGGEQFVQQGGATGPIARDARDLSLLLSTMAGYDPRVPLAMEEDPKRFKTVRRTSLKGVKVAWMADLGGYLPTEPEVLAVTGAAVDRMRALGAKVDKVDKLNQYGSFSNADLWPTWLVFRHWLSGNLNFPIYNNPAWKPYLKPETLFEVEGMLHGIDGSGPITAQQAWNGSVKRTALYQGFRELFEHYDYVLLPTAQVMPFDNVDAQGNEVHWPKEINGVAMSTYHRWMEVTAIGTLLGAPTLAMPAGFGATGLPIGLQVIGRNHDDAGVIEFAAAWERETRLVEKHLPPLIKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR61</accession>
    <name>A0A0Q8VR61_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01280</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59686">
        <property type="protein sequence ID" value="KRC59686"/>
        <property type="gene ID" value="ASE19_01280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1862064at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="115" mass="12422" checksum="2155623276FCD9C5" modified="2016-01-20" version="1">MALSPFTRRSRSLGVSHVEQGLIQGLEPGEHVLVHDPVADEHFRAVVADVEFELTDTSYRIEIGGRITAAEAAEWLAPTGGADGHLTTGEIVALLDELRRSERDVTAALATLRAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRE0</accession>
    <name>A0A0Q8VRE0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 10">Cytochrome bc1 complex cytochrome c subunit</fullName>
            <ecNumber evidence="3 10">7.1.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">ASE19_02770</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <reference evidence="16 17" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9 10">
            <text>a quinol + 2 Fe(III)-[cytochrome c](out) = a quinone + 2 Fe(II)-[cytochrome c](out) + 2 H(+)(out)</text>
            <dbReference type="Rhea" id="RHEA:11484"/>
            <dbReference type="Rhea" id="RHEA-COMP:10350"/>
            <dbReference type="Rhea" id="RHEA-COMP:14399"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="7.1.1.8"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="10">The cytochrome bc1 complex is composed of a cytochrome b (QcrB), the Rieske iron-sulfur protein (QcrA) and a diheme cytochrome c (QcrC) subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cell membrane</location>
            <topology evidence="2 10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="11">Binds 2 heme groups covalently per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.8" evidence="3 10"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57037">
        <property type="protein sequence ID" value="KRC57037"/>
        <property type="gene ID" value="ASE19_02770"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070469">
        <property type="term" value="C:respirasome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008121">
        <property type="term" value="F:ubiquinol-cytochrome-c reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009152">
        <property type="entry name" value="bc1_cytC-su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000007">
        <property type="entry name" value="Ubiq_cycred_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5 10 11" id="KW-0349">Heme</keyword>
    <keyword evidence="8 10 12" id="KW-0408">Iron</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 10 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="14" id="KW-0732">Signal</keyword>
    <keyword evidence="7 10" id="KW-1278">Translocase</keyword>
    <keyword evidence="10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="10" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="14">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360302" description="Cytochrome bc1 complex cytochrome c subunit" evidence="14">
        <location>
            <begin position="42"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="264"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="15">
        <location>
            <begin position="49"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="15">
        <location>
            <begin position="166"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="139"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="13">
        <location>
            <begin position="145"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="binding site" description="covalent" evidence="11">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="11">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="12">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="covalent" evidence="11">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="11">
        <location>
            <position position="182"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="12">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012951"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00017819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00029351"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR000007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000007-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000007-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KRC57037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="297" mass="31031" checksum="C61A7F32AC026F19" modified="2016-01-20" version="1">MNRSAGRLSRHRRGPIAGLLVLALGLLLTGGLYAAFAPAQADSSQSQDELVKEGRELFLVGCAFCHGQNGEGVLTQGGTQYGPALTDVGSAAVDFQVGTGRMPMAQPGVQAPRKEVVYNKEEIAALAAYVASLGTGPSVPDTELYDTDRPGDLNGDGKEDSEDKELLVTRGSDIFLANCTACHNFEGSGGAMPRGGFAPKIRGVDSKHIYEAMLTGPQSMDTFSDGNIPPEDKKAVIAYLETLDKAPSYSGLTLGGLGPVSEGIIAWLFGIGVLVGFAVWIAAHTTRSSKKKDEAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VS74</accession>
    <name>A0A0Q8VS74_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03585</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892915.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56898">
        <property type="protein sequence ID" value="KRC56898"/>
        <property type="gene ID" value="ASE19_03585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2055774at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="65"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="65"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="309" mass="32262" checksum="B023FD23BE7DDB76" modified="2016-01-20" version="1">MQPVSSSAQAGAVEIAKVIANDSGGMSWTTGATCTSSPGTGAEPELDLPVNGGWRTVHMSRTGSRYATTQMAGTSDTSARVSSDARGATRLEVKATTTARATPSSASPDCTVRYSATGGAGIQVAVTRRSWIVVRSSVTSRGGFGGELYVEATDSDFVVESVPGKGITRLVTPQTYQLIGALAAEVDVPAGSATARSSSASMVASLAVLPVGTRRTHTGNGRPFVTAGHRNCAQNRTLMTLTRAARTKARSITFFADGQRRVVLRGRALQRSSILLTRLAPRKFGLVRAEIVLRSGAKRVTQSTSWPCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUQ2</accession>
    <name>A0A0Q8VUQ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03445</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892889.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56871">
        <property type="protein sequence ID" value="KRC56871"/>
        <property type="gene ID" value="ASE19_03445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2065421at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360430" evidence="2">
        <location>
            <begin position="30"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="95"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="258" mass="26227" checksum="A402F39E991B2EE4" modified="2016-01-20" version="1">MHRALIKLVLTLAVGLGLTLTSVGVPANAAPAAETAVAAAPATANCSSQQAAYGQSQATYAKRHRAYQKARTAVQKANKALKKAAAHKAKGKKAKKAKKAKVAKAKRNVAKTKRTYAKAKAAQRKAASARATARKRYEDCKAVPAGPTASPVQALCDAGIPQPICDTLASLIPSGSTASPLALLCSSAPQAQPLCDLISTGTAPDPATLLTIVDQVLSALGLDDLLGQLLDGLGLGDVLDETGLGDLLDLLGLGGLLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVP1</accession>
    <name>A0A0Q8VVP1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Bacillolysin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00965</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896716.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59625">
        <property type="protein sequence ID" value="KRC59625"/>
        <property type="gene ID" value="ASE19_00965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1465483at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001842">
        <property type="entry name" value="Peptidase_M36"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027268">
        <property type="entry name" value="Peptidase_M4/M1_CTD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02128">
        <property type="entry name" value="Peptidase_M36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360439" evidence="1">
        <location>
            <begin position="26"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="351" mass="37635" checksum="2AC66FEA386BC6E7" modified="2016-01-20" version="1">MQLRPALATLAVVLTFAVPASPAGAKPVTGFTTGSGLVFKVNPVQSSGDQSLVDAKDSASAVPSSEYAEVPLRNLDGSGYLRGRWVTVESATGTPAYSATGVFDYNRKDDQFEQVMAYFWVNQAQEYIQSLGFGSTLRPVVKQSFSVKIDQYGGDNSYQTDKPYRIRLGKGGVDDAEDAEVIVHEYGHAVHASQVPGYGTSLDAGSIGEAWGDYLAVSVGLDAAAEYGWPVQAPEACVMDWDSTSYTAGPVHCLRRLDTNLTVADRKSEVHYDGQIWSRGLWDARAGYESLGLTSRDFDTTVIDAQFDFAPDTSFDAAATAIYHKAFTRDGADAAAVIEDAFAARGITVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZI0</accession>
    <name>A0A0Q8VZI0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_01715</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896577.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59762">
        <property type="protein sequence ID" value="KRC59762"/>
        <property type="gene ID" value="ASE19_01715"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01782">
        <property type="entry name" value="MCEVIRFACTOR"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="50"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="129"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="341" mass="35941" checksum="D130A14EC2B509AD" modified="2016-01-20" version="1">MKRKKQLKAPRTAFSEMDLGLIGIVGLALTIALLAVALNIGKVLDLVGHTSYTAELSEAGGIRGGDEVRVAGIKVGEVKSVKLVDDHVEVSFRLSEVEVGDQTRATVKSDNALGSKFLAIEPGGKGDSDMIPLERTDAGFAVNEELGELTTSTSKIDTDRLAASFDSVSKVLSATPKEFRSALTGVSELSKTLSSRDSELATLLQEASGLSDVLADRNKDITSIFTNGSLLFTELESRRKVIGELLQSVETVSAQLSGFVKDNKVSLRPALTELRQAARLLGDYRSTLDFAIGNTGAYARSLGESVAGGPFFQAYLANVGSPEDLVTGGLAGILQGNQGGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMD8</accession>
    <name>A0A0Q8UMD8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895930.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46154">
        <property type="protein sequence ID" value="KRC46154"/>
        <property type="gene ID" value="ASE19_20010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="846054at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="535" mass="54217" checksum="54DA61A04B4F9EBC" modified="2016-01-20" version="1">MARRRDRRADERGAVAVLMGVGIALLLVIISAFAVDLGMQRTARRDMQALADVVALDLSRNLDGRSATALASTMDSEMAKSLERNADTVGTAPDLEWQLGTFKDGNFAVVSGSAVPNAVRVRANTTVGFALGRLTGMDSGDAHRTAIAQSEGGACYALGSYAARLNTAKSPLLSTLLGPLGSNINVSAIDYNGLATTKISLLDLIGVNLGAGTLEELVQGNQLVSLGQFYVATASVLSKNGQAAAASVLQAMSVGLNNVKLNAGDLIDLGTTGSNGLDADLNLLDLVTAAAAAATGTNALVIPQASVNLGPLANVGVNLSAIEAPKLACGRKNDTSSKAESTQVKINLSARALNLNLLLAGTDVELSGSVNVAQAVGQLTDVRCSPTGLTIQVGNGLLSVDLKLQVTVYANVLGIKIPVVGGPITIKGQSTSGGDAVIEIANDSDYDQLSEVGAGSSGLPVLTVNTSGLALIGLPVGIVLGPIVNTLVSGLVNPLVSSLDSALLTPLLGALGADLSGADIRKFRTPKCDAPKLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMF4</accession>
    <name>A0A0Q8UMF4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20080</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895941.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46166">
        <property type="protein sequence ID" value="KRC46166"/>
        <property type="gene ID" value="ASE19_20080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1456605at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="161"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="360" mass="38691" checksum="F2986DEF9EEF3D7A" modified="2016-01-20" version="1">MSALRFSGPVLPDGETREVYVVDGRITYERPAGLSGAETAAQGWIVPGLVDAHNHLGLEDGGAVPDEEIERTAILDRDNGVLLTRDCGSPADTRWVHEREDLPRLIRCGRHVARTRRYIQNYGQEVEPDGLVDAVAEQAQAGDGWVKLVGDWISREAGDLAPSFPADAVTAAIEVAHAHGAKVTAHCFGEDSLSPLLDAGIDCIEHGTGLTEAHIAQMVERGVALVPTVLQTSKFPGFASSGRARFPAYSATMDRLFERRREVLMNAHDAGVALYVGSDGGGSARHGVLHEEIRAMAAMGLSNEDVLGAASWRARAWLGWNPGLDEGDTADFVVYPRNPVDDLSVLTEPTCVVLRGRVYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMK5</accession>
    <name>A0A0Q8UMK5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20490</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896005.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46234">
        <property type="protein sequence ID" value="KRC46234"/>
        <property type="gene ID" value="ASE19_20490"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="34"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="58"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="237" mass="25075" checksum="63EB77122CB453DA" modified="2016-01-20" version="1">MTQPPPPAPPVPPAPPVPPVPPPPPRPAKKRTGLVVAAIIAVLLLVGGGITAVVLLGGDDEKPSSDDTTTTSQAPTTTIPDLGGPTIEGNGYQVQLPDGWTDGTTAFKKANPRLKTIDKVVLWGPSADTARGNVIVETEAAYGYTDPNDLKERWERALVSDDRTARISDGSPTTINGQTALTAEITRTNNDGTKVQQRAHLVISDNRSYSITASLQAGDDDVLNTFARILSTWQWAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN57</accession>
    <name>A0A0Q8UN57_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Tad domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21475</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896174.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46404">
        <property type="protein sequence ID" value="KRC46404"/>
        <property type="gene ID" value="ASE19_21475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2068540at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028087">
        <property type="entry name" value="Tad_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13400">
        <property type="entry name" value="Tad"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="domain" description="Tad" evidence="3">
        <location>
            <begin position="7"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="122"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="144" mass="15119" checksum="C6AD6CA8343A416F" modified="2016-01-20" version="1">MIRDERGSSTPLIIAFMAVILLLVAVVVDASAAFLARQRLDELADGAALQGADLGAQGRDAYDGGLARDDLAISDREAERAVRAYLRDSGAEQDHPGLRAVVHVDGDRVVVELVAPVDLPLSLPGGPERPSVRSVGSAVVDPEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNC8</accession>
    <name>A0A0Q8UNC8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21965</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CdaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896258.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46488">
        <property type="protein sequence ID" value="KRC46488"/>
        <property type="gene ID" value="ASE19_21965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1439158at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041522">
        <property type="entry name" value="CdaR_GGDEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17853">
        <property type="entry name" value="GGDEF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF_2" evidence="3">
        <location>
            <begin position="189"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_30" evidence="2">
        <location>
            <begin position="344"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="409" mass="44876" checksum="C7BC3D3308655B93" modified="2016-01-20" version="1">MAGSDDHAQVARAWLQDFVEAALRPSEVDEFVRTVDDEILAAIPVLAGDASLSEELHASTREHWRNFLVSLSGEHRLALPPAAIALTLSIARRNHDISVLLKIYRVANRVVFRYVAEHTTPDHLPPSLPRDEALLALWMRADRWIDESVERLVEHYTRERASLVEGAQARRAETIEALVAGAVPTPEHERLLTHRFSAWQTAFVLSAPPHADEGAPLFDLALRVCQQLGLPRPLTTLAGSRELWGWVATGEQPDIALPALADLLERSGAHLAVGASAQGPEAFRLSHVQAIAAQRIGLRALAPSHAYTDIELVSLVGDGELAREMVRRELGPLLTGAKADDGLRTTTLTYLRAGQNVDLAAERLFIHPNTVRYRIGRIEEQLGHRIAARAATLEACLAWLEVYGADALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNZ5</accession>
    <name>A0A0Q8UNZ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22305</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896311.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46543">
        <property type="protein sequence ID" value="KRC46543"/>
        <property type="gene ID" value="ASE19_22305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1729164at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359259" evidence="2">
        <location>
            <begin position="24"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="211" mass="22072" checksum="6744E8FB4AE32488" modified="2016-01-20" version="1">MRTRALLAAAALMTLSGCGSASAPSAPSGVDELVVPTPDPDPSDFVGGVDNPWFPLEPGTRWEYGAATARLVVSVEPGREVAGVATTALVRTTADGEQTRDLYAQDERGNVWWFGREGAWLAGESGAEAGLAMPAEPRRGDGFRTGLAPGVDEVASVVAVDAAVDVPLGEYDDTVTLELRDDTVVRREVYARGVGLVQADGTGLVAYDEPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UP59</accession>
    <name>A0A0Q8UP59_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dak phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20190</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896376.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46607">
        <property type="protein sequence ID" value="KRC46607"/>
        <property type="gene ID" value="ASE19_20190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1554133at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004371">
        <property type="term" value="F:glycerone kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019986">
        <property type="entry name" value="DAK2_dom-cont_prot_YloV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004007">
        <property type="entry name" value="DhaL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036117">
        <property type="entry name" value="DhaL_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033470">
        <property type="entry name" value="UPF_DhaK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13684">
        <property type="entry name" value="Dak1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02734">
        <property type="entry name" value="Dak2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01121">
        <property type="entry name" value="Dak1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01120">
        <property type="entry name" value="Dak2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101473">
        <property type="entry name" value="SSF101473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03599">
        <property type="entry name" value="YloV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51480">
        <property type="entry name" value="DHAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DhaL" evidence="1">
        <location>
            <begin position="23"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="573" mass="57896" checksum="D1E3B461608AB5E9" modified="2016-01-20" version="1">MDEGTTAAAAGAGAGAGGGIALDTVARFVDIAVDALAQAREEIDALNVYPVPDGDTGTNMYLTVVAARDAIRDAQADPSAERGAILTGLARGALLGARGNSGVILSEMLGAVVRRIAAATREEHNATVIADALRQASIASYAAVGEPVEGTMLTVLRAAADAAAVRADKPGARSSDVLADAAAAAREALGHTPEQLAVLAQAGVVDAGGRGLSVILDAAETVLTGRRPIPVTAPLGSHAIPVPHVATAGADLCEDGPAYEVMYLLDAPDDVAPGLRARLGELGDSVVVVGGDGLWNVHVHTDDVGAAIEAALEDGRPHRIRVTHFAEQIARQEAQKAPAETPAQPALPALAGRTVVAVAAGPGLAVLFEEAGAVVVPGGPGRRPSTGELLEAITACGAKEVVVLPNDEPTVRAALAAASTAEADHGARGLRVAVIPTHAQVQGLAALAVHEPGRAFDQDVTEMTATARHVRHGAVTIAARQAMTMAGPCEPGDALGVIAGDFAVVGDELGSVALVVLDRLLAAGGELVTLVGGVDSGELADRATAWVEEFHPHVDVVVYDGGQERYPLLMSVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UQS7</accession>
    <name>A0A0Q8UQS7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glycosyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_19910</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895913.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46137">
        <property type="protein sequence ID" value="KRC46137"/>
        <property type="gene ID" value="ASE19_19910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="948440at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044249">
        <property type="term" value="P:cellular biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901576">
        <property type="term" value="P:organic substance biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="4">
        <location>
            <begin position="17"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="3">
        <location>
            <begin position="190"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="380" mass="41504" checksum="BE07A4C2A5ADB719" modified="2016-01-20" version="1">MNKLRVLVVAESFLPQINGVTNSVRRVLEHLSAEGHHAQLVAPTGPETYAGFRVHRARGANLPFYPDFRLGLETRRRLRHLMTQYRPDVVHIASPATLGYQAARAAHELGIPTVAIYQTDLVGFAERYDLPGGARAMAGLTRRIHLQVDRTLAPSTASIDQLEQLGVPDVHRWGRGVDLVAFHPRHRDEALRRRLAPDGRLVIGYVGRVAAEKELDLLTHLADDPRYALVVVGGGPDEPRLRNLLGDRASFLGLLHGDDLSRAYASLDVFVHTGRYETFCQSAQEALASGVPVVAPAAGGPIDVVAHGATGLLYRPSDGRDLAAAVDRLASDPELRAAMGATALRAVQERSWFAINEQLLEHYRAVIGPQASERPSYRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UTA3</accession>
    <name>A0A0Q8UTA3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Aminopeptidase N</fullName>
            <ecNumber evidence="4">3.4.11.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_19880</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Release of an N-terminal amino acid, Xaa-|-Yaa- from a peptide, amide or arylamide. Xaa is preferably Ala, but may be most amino acids including Pro (slow action). When a terminal hydrophobic residue is followed by a prolyl residue, the two may be released as an intact Xaa-Pro dipeptide.</text>
            <dbReference type="EC" id="3.4.11.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.2" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46131">
        <property type="protein sequence ID" value="KRC46131"/>
        <property type="gene ID" value="ASE19_19880"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045357">
        <property type="entry name" value="Aminopeptidase_N-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042097">
        <property type="entry name" value="Aminopeptidase_N-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001930">
        <property type="entry name" value="Peptidase_M1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014782">
        <property type="entry name" value="Peptidase_M1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027268">
        <property type="entry name" value="Peptidase_M4/M1_CTD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01433">
        <property type="entry name" value="Peptidase_M1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17900">
        <property type="entry name" value="Peptidase_M1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00756">
        <property type="entry name" value="ALADIPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63737">
        <property type="entry name" value="SSF63737"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M1_N" evidence="12">
        <location>
            <begin position="48"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M1" evidence="11">
        <location>
            <begin position="305"/>
            <end position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012564"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00015611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF17900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC46131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="473" mass="51276" checksum="C46897B219430802" modified="2016-01-20" version="1">MVLLSLLVPGLSGASAEERVSLRAVSGSPNGPDAYWPRDGNGGTNALRYNIHVTYDFRSRKLWGRTVATMRAQEALSSFHLDLLLPVSRVRVNGRAARFSKPTPHELRVVPATAIAKGTTFKVDVTYAGYPGRASYAGERNWLADGQEVVAMNQPHMAPWWFPSNDHPTDKAQFEVRVTVPRAKRVVSNGTLIDRTVNGTRATTHWRATDPMATYLAFFAAGGYAVETGRSAAGIRYYNAVSTQLPPAARSAAMAQLRRTGAVTDWLAGQFGTYPFTSTGGLVTGLDVGFALENQTRPTYGAWIYPSVVVHELAHQWFGDSVSVRRWRDIWLNEGFASYAEWAFDEAHGGTSTAARLGSTYRAWCDAPTADFWTLDLTSPGAAHIFDEPVYERGAMVLAALKKRIGTTNLRNLLRAWAAAHHDGNATVAQFEALAASYGGGQDLGGFFDAWLRDGTVPAATADNGLAGVTCPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU95</accession>
    <name>A0A0Q8UU95_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17705</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48764">
        <property type="protein sequence ID" value="KRC48764"/>
        <property type="gene ID" value="ASE19_17705"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="8"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="135"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="287"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="144"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="305"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="429" mass="43185" checksum="80E36A2F5500648A" modified="2016-01-20" version="1">MSAIALALGGVGGQDAPEATKDTSAQPAPTADAPVAVPDAELAAPAAAPNAVVVDTSALRAPVGAAAHYDGAIVDAPATAVVAYQRAAAIIDGAAADCHLDWMVLAALGRIESDHGRGADDTHETTADGVVEPALVGMPQDGRDGRNKVSDTDGGKLDRNARWDAPVGPLGLLPTTWSSVAVDADGDGARNPQDLDDAALGTSVLLCADGADLSDPAALRKALASYNTSEGFADTVLALVARYAEEIASVPASSPLVIGPIGDPFVLCDCDDDLAVALGRVRASIRRNGGHLPAPSGTLPDLDGPYTPTPDPTPDPTPDPTPDPTPTPDPTPTPDPTPEPTPDPTPDPTPEPTPEPTPDPTPDPSTEPEPTPQPEPTPAPTSDPIPDPGPAERSVDPAPAPTSEPATDPAPEPAGDATKPQEPVATVPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUG9</accession>
    <name>A0A0Q8UUG9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GntR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17980</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48810">
        <property type="protein sequence ID" value="KRC48810"/>
        <property type="gene ID" value="ASE19_17980"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="2">
        <location>
            <begin position="30"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="464" mass="48532" checksum="E8CBA9A41C364BFF" modified="2016-01-20" version="1">MFCHAARQRGFCYVAIVRALISALETRMDEPTAKGLAAAIGRAVRDGVLSPGDRLPPIRDLAHELALSPTTVSAAWALLTRAGTLRTAGRRGTVVADTSAPRAGRYQQALEHPAAFPLDLSTGVPDEELLPALGDALRALTTAGTPHSYLDDPVLPELRTALLASWPYEPEALIVVDGAMDALELVLRPRIQYGDRVVVEHPGFPPLIDLLEALGAVVVGVSLDDEGILPSDLSAALAEPVAAVVLQPRAQNPTGISMSAARAAALAELLADGDVLVVEDDSASALGGPPPVTLAGFLPDRTVHVRSYSKSHGPDLRLAAVSGPAPVIDAVRHLRQLGQGWSSRLLQRILLHLLTDPESRAEVDRARATYAARRTAFVEALAAEGVEVGGVEGLNAWVPVHDQAAALVRLASQGIGVAAGSPFQVLPDSPHVRVTCGLVREDLAEVAAAVAAAARTGGWGNRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUS2</accession>
    <name>A0A0Q8UUS2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19770</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895888.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46112">
        <property type="protein sequence ID" value="KRC46112"/>
        <property type="gene ID" value="ASE19_19770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="595957at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016641">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001695">
        <property type="entry name" value="Lysyl_oxidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01186">
        <property type="entry name" value="Lysyl_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359444" evidence="2">
        <location>
            <begin position="32"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="230"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="491" mass="53748" checksum="205B6536B030A242" modified="2016-01-20" version="1">MKLRLGVTATALATTALTALTAVSAPSARTAEPPPAGPPISLTGPASVTVESYDGSLYGDIGLNLLAHDRAFEVRSYRTRWSNPIETYWQSPDGPVMIPAGANDRWEALDNFLVVDFKRPSDGTLVRTRTLDVCLNQWNTQRTAPDAPLRSPYPTGCPGSPFTLGSVQGIQRDWVSNVDVSGTGPALRLPVGRYDVVARIASRYVTALGMDPADARRTYRLVVKKGVDGGYEKRTTPTGTTERLRAATRPSTARAGAPGDALPDLRSLPASGLQLSEDKRYLRFSATVWNGGDGPMVVDGFRRGTQDVMDAYQYFIDSDGNQTGYQQVGTMIWHTAPTHNHWHFKDFAKYSLLREDLSQVVVSRKESFCLANTDAVDYTVPGADWQPENTDLHTSCGDRSSISLREVLSSGSGDTYAQFRAGQAFRIDNLPNGFYYIAVEANPNRNLVESSTTNNRALRKIRLSGSLANRKVSFYRVGLVDDHGYGVEEEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUV1</accession>
    <name>A0A0Q8UUV1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">4-amino-4-deoxychorismate lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_18975</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893384.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48982">
        <property type="protein sequence ID" value="KRC48982"/>
        <property type="gene ID" value="ASE19_18975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275805at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001544">
        <property type="entry name" value="Aminotrans_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018300">
        <property type="entry name" value="Aminotrans_IV_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036038">
        <property type="entry name" value="Aminotransferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043132">
        <property type="entry name" value="BCAT-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043131">
        <property type="entry name" value="BCAT-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01063">
        <property type="entry name" value="Aminotran_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56752">
        <property type="entry name" value="SSF56752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00770">
        <property type="entry name" value="AA_TRANSFER_CLASS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="3 5" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU004106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC48982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="275" mass="28819" checksum="D3C50F46E8138792" modified="2016-01-20" version="1">MRAWINGELLSDPKAPAVPVTDHGLTVGDAVFEAVKVVDGQPFAFQRHLDRLVSSAEGLGLVGLDPEAVRRGVAAVLEGDPLPLGRLRITVTGGNAPLGSGRGTDPLTVIVVASPMEPAAETTAAITVPWPRNERGALAGLKTTSYGENVVALARAQQQGASEAVFANLAGNLCEGTGTNVFYVVDGELRTPTLASGCLAGVTRALVIEWFGAREVDEPIEVAANAEEIFLVSTTRDVQGVHRWDDRELPAPGPVTKEAAAAWRANEASLLGFDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV49</accession>
    <name>A0A0Q8UV49_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Acyl carrier protein</fullName>
            <shortName evidence="1">ACP</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">acpP</name>
        <name evidence="4" type="ORF">ASE19_17300</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Carrier of the growing fatty acid chain in fatty acid biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="1">4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by AcpS. This modification is essential for activity because fatty acids are bound in thioester linkage to the sulfhydryl of the prosthetic group.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the acyl carrier protein (ACP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893809.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49083">
        <property type="protein sequence ID" value="KRC49083"/>
        <property type="gene ID" value="ASE19_17300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1943389at2"/>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000036">
        <property type="term" value="F:acyl carrier activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01217">
        <property type="entry name" value="Acyl_carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003231">
        <property type="entry name" value="Acyl_carrier"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20863">
        <property type="entry name" value="PTHR20863"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="1" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="1" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="1" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="1 2" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carrier" evidence="3">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="1 2">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC49083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="81" mass="8712" checksum="884657419A550BCC" modified="2016-01-20" version="1">MSTEEIRAALADIVNEVAGIPAENVQLDKSFSEDLDVDSLSMVEVVVEAEEKFGVTIPDDEVKNLKTVGDAVAYIERNSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV77</accession>
    <name>A0A0Q8UV77_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18600</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893845.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49115">
        <property type="protein sequence ID" value="KRC49115"/>
        <property type="gene ID" value="ASE19_18600"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2059215at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="85" mass="9247" checksum="5BC68D8D14CA4A2A" modified="2016-01-20" version="1">MPEQPATSGSAFRPPADQPWRWRLEDADGAEVAVTGDLADQTFPSQGDAESWVGEIWHELADQGVAQVTLFEADREVYGPMSLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UW41</accession>
    <name>A0A0Q8UW41_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Pyrimidine-nucleoside phosphorylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_22110</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896281.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46512">
        <property type="protein sequence ID" value="KRC46512"/>
        <property type="gene ID" value="ASE19_22110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1724909at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004645">
        <property type="term" value="F:1,4-alpha-oligoglucan phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016154">
        <property type="term" value="F:pyrimidine-nucleoside phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006206">
        <property type="term" value="P:pyrimidine nucleobase metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006213">
        <property type="term" value="P:pyrimidine nucleoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000312">
        <property type="entry name" value="Glycosyl_Trfase_fam3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017459">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036320">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035902">
        <property type="entry name" value="Nuc_phospho_transferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036566">
        <property type="entry name" value="PYNP-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013102">
        <property type="entry name" value="PYNP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018090">
        <property type="entry name" value="Pyrmidine_PPas_bac/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017872">
        <property type="entry name" value="Pyrmidine_PPase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000053">
        <property type="entry name" value="Thymidine/pyrmidine_PPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10515">
        <property type="entry name" value="PTHR10515"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02885">
        <property type="entry name" value="Glycos_trans_3N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00591">
        <property type="entry name" value="Glycos_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07831">
        <property type="entry name" value="PYNP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000478">
        <property type="entry name" value="TP_PyNP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00941">
        <property type="entry name" value="PYNP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47648">
        <property type="entry name" value="SSF47648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52418">
        <property type="entry name" value="SSF52418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54680">
        <property type="entry name" value="SSF54680"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02644">
        <property type="entry name" value="Y_phosphoryl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00647">
        <property type="entry name" value="THYMID_PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PYNP_C" evidence="5">
        <location>
            <begin position="338"/>
            <end position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="429" mass="44251" checksum="744BFAC1273C0FA8" modified="2016-01-20" version="1">MAESHDAVEVIHAKRDRGTLSTSQIDWMVDAYTRGVVADEQMSALAMAILLNGMDRREIADWTAAMIASGERMDFAGLSRPTADKHSTGGVGDKITLPLAPLVAACGVAVPQLSGRGLGHTGGTLDKLESIPGWRALLSNEEMLAQLEDVGAVICAAGDGLAPADKKLYALRDVTGTVEAIPLIASSIMSKKIAEGTGALVLDVKVGSGAFMKSVDTARELAEVMVALGKDAGVNTVALLTDMETPLGLTAGNAIEVAESVEVLAGGGPADVVELTVALAREMLAAAGRDDVDPADKLADGTAMDAWRRMIGAQGGDPDAALPVAKESHVVTAASDGVLTRLDALSVGIAAWRLGAGRERKEDPVQAGAGVVWHARPGDEVRAGTPLFTLLTDTPDRFDRALAALEGGYDVAPVGTAFEPAPLVIDRVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXB1</accession>
    <name>A0A0Q8UXB1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phenylacetate-CoA oxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21650</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896203.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46433">
        <property type="protein sequence ID" value="KRC46433"/>
        <property type="gene ID" value="ASE19_21650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1389523at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010124">
        <property type="term" value="P:phenylacetate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007814">
        <property type="entry name" value="PaaA_PaaC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011882">
        <property type="entry name" value="PaaC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05138">
        <property type="entry name" value="PaaA_PaaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037834">
        <property type="entry name" value="PA_CoA_Oase3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02158">
        <property type="entry name" value="PA_CoA_Oxy3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="311" mass="33886" checksum="E0154D6425E01CCD" modified="2016-01-20" version="1">MAEVHTHDPDDHESAYAGLLVNDAHWAFGTDFEDPLAGVDTTVPDGVDASTLATYCLMLGDDALVLSQRLSEWCSRAPDLEEDIALANIALDLLGQSRLLLARAAAADPSIVPALPEDSPVPDEDRLAFFRDDLQFRNVRLAEVANGDFAETVVRVLLFSSWRLAVFEQLSSSRDAVLAAVAAKGVKEMAYHRDFSARWFLTLARGTEESRRRLVAGLEQLWPLWPELFETHSAEREAAAAGVGVDPAQVAAEVDVVLEQVFAASGVDRPDRGALAGIQGKKGRDGHHTEAMSKILAEMQVVARAHPRGRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXJ2</accession>
    <name>A0A0Q8UXJ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lysine transporter LysE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_22030</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896267.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46497">
        <property type="protein sequence ID" value="KRC46497"/>
        <property type="gene ID" value="ASE19_22030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1927576at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006324">
        <property type="entry name" value="LeuE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="41"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="71"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="119"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="152"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="191"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="215" mass="22165" checksum="9DAABC47293C9D1C" modified="2016-01-20" version="1">MIGVDQLLGFGLAALIVIVIPGPSVVFVVGRAVSYGQRVAVASVLGNAAGLFLVMALVCLGLGAVVAESQLVFTVIKLAGAAFLVWLGVQAFRHRRELRFGVEGTPAPVAGWRAFRQGFVVGVSNPKGFMMFAAILPPFVDRSAGAADVPAQMFALGCVAVLIGLCCDSAWAFAAGRARDWFVASERRGSVLGAVGGTSMIGLGMAMAVTGHADR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYI9</accession>
    <name>A0A0Q8UYI9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">DNA repair protein RecN</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6 7">Recombination protein N</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_17245</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 7">May be involved in recombinational repair of damaged DNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the RecN family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893803.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50334">
        <property type="protein sequence ID" value="KRC50334"/>
        <property type="gene ID" value="ASE19_17245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1074831at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004604">
        <property type="entry name" value="DNA_recomb/repair_RecN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003395">
        <property type="entry name" value="RecF/RecN/SMC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11059">
        <property type="entry name" value="PTHR11059"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02463">
        <property type="entry name" value="SMC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003128">
        <property type="entry name" value="RecN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00634">
        <property type="entry name" value="recN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SMC_N" evidence="9">
        <location>
            <begin position="4"/>
            <end position="535"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="8">
        <location>
            <begin position="153"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00033408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR003128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC50334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="582" mass="60563" checksum="B3534A4E9271E6C4" modified="2016-01-20" version="1">MIEELRISSLGVIDASVLELGPGLTVITGETGAGKTMVVTALGLLLGGRADSGAVRAGAKQARVEGLIAATAVPGLAAAVEEAGGEVEDDGIVLARNVSAEGRSRAFAGGASVPVATLAEIAEPLVAVHGQSDQHRLLKPQTQRHALDRFGALEDLHASYAALHDQLVSTEQELAEVTATARERAREADVLRYGVDEVAAVAPQPGEDAELASEEARLGHADTLRGAAEQAREALSSEHGSPDALGAVAAARGLLEGVRDHDPQAAALADRVAEVSYLLSDVAADVASYASGVDTDPSRLAAVSERRAALTALTRKYGETVDEVLAWAETASTRLLDLDSTDERIQELAAWATRLREQLAEAGVALSQARVAAAEKLSGAVSDELTLLAMPHARVTIRVSPREVDPPADPGHPPADVLRVGERWVRFGRSGLDDVEFLLAANSGSEPRPLHKGASGGELSRVMLAVEVCLAGTSPVPTFVFDEVDSGVGGAAAVEIGRRLATLADDAQVLVVTHLPQVAAFADRHVLVEKSSDGTVTTSGLVTLDDAGRERELSRMLAGLAESDTALAHARELLDLARRRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYZ6</accession>
    <name>A0A0Q8UYZ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18415</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893290.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48889">
        <property type="protein sequence ID" value="KRC48889"/>
        <property type="gene ID" value="ASE19_18415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="721431at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="1">
        <location>
            <begin position="38"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="302" mass="32582" checksum="8CB9E638DE21805D" modified="2016-01-20" version="1">MTGRNRHDVTRHDITFDSDGDTCAAWLFLPDGVERPPVVILGHGLGATREMRLDAFAERFAQAGIAAIAFTYRHFGDSTGQPRQLLSIKRQLADWDAAIAHAKTRGDVDGSRIAVWGSSFGGGHAIIVASRHPELRAAVSQCPFTDGLASARALGPIGTMRLLPTVGADVWSAIRGKEPRLLTLAGAPGDKALMTAPDALPGYQALVPEGTTFVNEVAARVAPTITWHRPGKAARKVKVPILFCVCDHDSVTPAEETLAYARTAPKGEIRSYDAGHFDIYLGQPFEEIVVDQTEFLTRHLEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0N1</accession>
    <name>A0A0Q8V0N1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_22455</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896336.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46567">
        <property type="protein sequence ID" value="KRC46567"/>
        <property type="gene ID" value="ASE19_22455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1254678at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="49"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="78"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="127"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="157"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="196"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="232"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="269"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="318"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="351"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="427" mass="44235" checksum="A0D8ED90C74A755E" modified="2016-01-20" version="1">MTTETPETTPATPSYAEADFAVDSHRAGTLREAGIDYLNRVRGGDMGSLPALLGLLVLFLVFGLTTDSFFTNLNLANLTVQAAPICVLAMALVPVLLIGEIDLSAGFAGGTSAAVTALMIVDHGQSWPVAVVGGLATGAVIGTIIGTAVAKLGIPSFVVTLAFFLALQGVMLKLIGQGGSVRFNDEVLRGLAIKNVPITLGWVAAIAIVVLYVAIALFTFRRKVARDLARPPFGLVLVRIGVVAVVVLGLTAYFSENRSRNPVFPIEGIPWMVPVVIVILILMTFLLSRTTFGRHLYAVGGNTEAARRAGINVIYMRIMAFVLCSSLAAVAGILQAAYSGKVSPGSGGGNVLLYAVGAAVIGGTSLFGGRGRAIDGVIGGIVLATVDNGLPLLIEESYANYLVTGGVLLLAASVDALSRRRRSASGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3D6</accession>
    <name>A0A0Q8V3D6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17525</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893137.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48733">
        <property type="protein sequence ID" value="KRC48733"/>
        <property type="gene ID" value="ASE19_17525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1696971at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009097">
        <property type="entry name" value="Cyclic_Pdiesterase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55144">
        <property type="entry name" value="SSF55144"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="193" mass="20691" checksum="0E140677D0741A97" modified="2016-01-20" version="1">MSHPAASHTVLVVPVPALETWVRARWEHYEPRWVSRDPAFTHAHITALAPFLPSPTAADLAVVGSIAAAADAFAYELSAVTAFPDGVVHLPPDPLEPFAALTAALWEAFPSCPPYAGAFADVVPHLTLDQLSAEVSLASVRASLGDLLPVRTVADRLELHRYAEGDCRVLASWSLGWPEDFAGDAGTRWSAKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4V0</accession>
    <name>A0A0Q8V4V0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17360</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48706">
        <property type="protein sequence ID" value="KRC48706"/>
        <property type="gene ID" value="ASE19_17360"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1771616at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025310">
        <property type="entry name" value="DUF4164"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13747">
        <property type="entry name" value="DUF4164"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="178" mass="19745" checksum="2C16F8537AC9F74C" modified="2016-01-20" version="1">MAIVNDPQIWTLLGVFSAIMFAAFGVIARYTVSAMNARFDAVDARFDAVDARFDAVDARFDAVDARFLAVDGRFDAVEQRLDAKIDGLEQRLDARIDGLEQRLDARIDGLEQRLDAKIDALGDRLDTKIDGVEQRGDAKYDHLAEVLGVRLDSVDHRLGAVEDDLKIVKAHLLRHPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V553</accession>
    <name>A0A0Q8V553_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aromatic ring-opening dioxygenase LigA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894518.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52581">
        <property type="protein sequence ID" value="KRC52581"/>
        <property type="gene ID" value="ASE19_09045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1694750at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="1">
        <location>
            <begin position="160"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="238" mass="24562" checksum="1A7E1E883C25ADD4" modified="2016-01-20" version="1">MTVTAWDEPAGGTPRGTLVVLPGRGETPASYERFGRRLSADAWRVRLVPVDLDDLDAAHEQVEKLLADESLPAPKVLVGTDSGAALAALLAPSLPVDGVVVAGVALPGSAGVGSWEDEVEARTACPVHRRVIGEDAGFARGGLNLPLPWASVAPEGPGKPVLVLHGSADPVTAPTDALALYDGVPDVRVRLVNGGRHDVLNDASHRSVAATIVLFLESLKLGPELPDVVSEPATSGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V559</accession>
    <name>A0A0Q8V559_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894525.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52588">
        <property type="protein sequence ID" value="KRC52588"/>
        <property type="gene ID" value="ASE19_09090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="162819at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SBP_bac_5" evidence="1">
        <location>
            <begin position="90"/>
            <end position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="516" mass="55051" checksum="7ADD85E06CFCC007" modified="2016-01-20" version="1">MSLRTRQPATNLNRRAFLGASLGAGLILALEACGGTSTGTGSGGGAGTIKWAWQLPTTWDPVTSSAGSDVQMLALAYDPITALDQQGNAIPWLAESWKYDASGKKVTFTLRAGLKFSDGSPLDATAVAKSIERGRTQSGSLIAPQMKTIKKVTASGARDVVVELSEVDYQYPLLFAGKTGMVVNPAVFEKDAASLATQPAGSGPFQVTKYVQNDHASAKKNPNFFAADEIKVDNFELYPQADPATVVAAVQSGQYNLARLGGAQVQQAKDAGLDVQVLESMFVSVLDVHAGKAPWNDPAVVEALKFAIDREKIKEVANFGIGDVNYQPFPPGYVGYNPELADIYAHDPDKARQLLADAGYTKPVPAVLTSSGFAPAAVELIQAQLKEVGIDARIENIPGTQHTQLVYIERAKALTYDGFAGRESPVQAFQVLFGAEGLMNPARQTNAKLEAQLKKVKETPTDDPSYPALLQEATRIAVTSFPNTFLYLTPSIIARKGVSELPKSPSLRRFEGVSTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5L0</accession>
    <name>A0A0Q8V5L0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09050</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894519.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52582">
        <property type="protein sequence ID" value="KRC52582"/>
        <property type="gene ID" value="ASE19_09050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1571420at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="202" mass="21612" checksum="126C2539F079EE2B" modified="2016-01-20" version="1">MTQQQIVPVETDVPELAAFAERVAGLIADGIDEQALTAAVRDDLEATLAAGFALPADKTVPDPQRYVMYPLHVAADGSFSIASAVWNVGQGTPVHGHETWGVVGIHSGTEVETRFAKPTVPDVPLVEEGTDEWTTGQVTVCCTTDDDVHQVRCGGDVPVVGIHVYGADIGTLPRRSYDPDTGAVHWFTSTWARPAAEKESHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V656</accession>
    <name>A0A0Q8V656_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Methionine ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_09475</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894593.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52655">
        <property type="protein sequence ID" value="KRC52655"/>
        <property type="gene ID" value="ASE19_09475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1058434at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033232">
        <property type="term" value="F:ABC-type D-methionine transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03258">
        <property type="entry name" value="ABC_MetN_methionine_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041701">
        <property type="entry name" value="MetN_ABC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018449">
        <property type="entry name" value="NIL_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09383">
        <property type="entry name" value="NIL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00930">
        <property type="entry name" value="NIL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="4 6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="4"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="43"/>
            <end position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="341" mass="36912" checksum="756B674E962D7750" modified="2016-01-20" version="1">MALVELHDVVKEFPGARRGDPVHRAVDGVDLRVEQGEIFAIIGYSGAGKSTLVRLVNALEPITSGRVVVDGVDVTTLPERGLRALRQGIGMIFQQFNLMESRTVWGNLAFPLTVAGVPKAEQQRRISELLHFVGLADKAHAHVTELSGGQKQRVGIARALATNPRLLLADEATSALDPETTRDVLDLLAKVNRELGTTILLITHEMDAVRRIAHRVAVMEQGRVVETGPVLDVFADPQHAVTRRFVGTVVDDLPPADVVAALRATHPGRLVRLAFRDPSVRQSEAFATLLRHDVSFELVFGGIEEIQGNSFGNLTLALDGDDAAIDAALAEVAVPWTEVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6F3</accession>
    <name>A0A0Q8V6F3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dolichol-phosphate mannosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893661.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50192">
        <property type="protein sequence ID" value="KRC50192"/>
        <property type="gene ID" value="ASE19_16435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1064289at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004582">
        <property type="term" value="F:dolichyl-phosphate beta-D-mannosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06442">
        <property type="entry name" value="DPM1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039528">
        <property type="entry name" value="DPM1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43398">
        <property type="entry name" value="PTHR43398"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="15"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="28769" checksum="A9C0A3271D63F07B" modified="2016-01-20" version="1">MLADHTPDLGRVVMVVPTYNEATNVAWIVGRLRAAQPTLDVLVVDDGSPDGTGAIADELAAADAQVHVLHRTTKEGLGAAYLAGFAWALERGYDVIGEMDADGSHQPEQLQRLLTGLLDADLVIGSRWVPGGSVVNWPWEREVLSRGGNWYVRTLLGIQVRDATAGYRLFRRTTLEKLQLESVRSTGYVFQTDLVSRTLRAGLTVREVPIEFVERVRGESKMSGQVALESLKRITAWGLRERWEQVKGRPTAQKELVPSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6F9</accession>
    <name>A0A0Q8V6F9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Chaperone protein DnaJ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">dnaJ</name>
        <name evidence="10" type="ORF">ASE19_10555</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 2 Zn(2+) ions per monomer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="6">The J domain is necessary and sufficient to stimulate DnaK ATPase activity. Zinc center 1 plays an important role in the autonomous, DnaK-independent chaperone activity of DnaJ. Zinc center 2 is essential for interaction with DnaK and for DnaJ activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the DnaJ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894776.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52843">
        <property type="protein sequence ID" value="KRC52843"/>
        <property type="gene ID" value="ASE19_10555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1738789at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031072">
        <property type="term" value="F:heat shock protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009408">
        <property type="term" value="P:response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd10719">
        <property type="entry name" value="DnaJ_zf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01152">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012724">
        <property type="entry name" value="DnaJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002939">
        <property type="entry name" value="DnaJ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008971">
        <property type="entry name" value="HSP40/DnaJ_pept-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001305">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036410">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01556">
        <property type="entry name" value="DnaJ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00684">
        <property type="entry name" value="DnaJ_CXXCXGXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="SSF46565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49493">
        <property type="entry name" value="SSF49493"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57938">
        <property type="entry name" value="SSF57938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02349">
        <property type="entry name" value="DnaJ_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51188">
        <property type="entry name" value="ZF_CR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 6" id="KW-0235">DNA replication</keyword>
    <keyword evidence="2 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0346">Stress response</keyword>
    <keyword evidence="5 6 7" id="KW-0862">Zinc</keyword>
    <keyword evidence="4 6 7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="J" evidence="8">
        <location>
            <begin position="14"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="CR-type" evidence="9">
        <location>
            <begin position="161"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="CR-type" evidence="7">
        <location>
            <begin position="161"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="214"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="217"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="228"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC52843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="395" mass="40514" checksum="CEDD953C9AF4DFD5" modified="2016-01-20" version="1">MSDDGIRSDWASKDFYKELGVAKSASQDDIKKAYRKLARANHPDSHPDDTAKHEKFKAVAEAYDVIGDADKRKKYDQAREMFSRGGFPAGGGFGGGGGYGGSVNVEDLLRDRAGGGGGGFGDLFGDLFGGGFSAGRRAPRPVRGTDLETTATIGFTESLEGVTVSLRISSEGACATCRGTGGKPGTKPHACPVCEGTGMVTASVGGAFSMNETCPACGGRQLVYDDPCPTCHGSGLGQATRTIQAKIPAGVKDGQRIRLRGKGAAGENGGPAGDLYVTVKVTQHRVFGRKGNDLTVDVPVSFAELALGAEIKVPTMGGSPVTLRVPAGTPNGRTFRVRGKGAAKADGARGDLLATVEVQVPATLDAAAKAALEAYAEATAPANAALRAGLYEDAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6I8</accession>
    <name>A0A0Q8V6I8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10135</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894700.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52767">
        <property type="protein sequence ID" value="KRC52767"/>
        <property type="gene ID" value="ASE19_10135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1628378at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011697">
        <property type="entry name" value="Peptidase_C26"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044668">
        <property type="entry name" value="PuuD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43235">
        <property type="entry name" value="PTHR43235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07722">
        <property type="entry name" value="Peptidase_C26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="22360" checksum="EDF8AD022F6B125C" modified="2016-01-20" version="1">MKPVIGVAGHRQLVPRTFGELPVHGTPAWYADAITACGGRPVVVPPGTGPDLLDLLDGVVLTGGDDLGADPARDADEVALARTAIAAGLPVLGVCRGLQVLVVAFGGTLRGGLDHVHPGRGHLVTTAPGSTIRSLLGAATTTSALHQQAAATPGPHWVPTAWTDDGVIEAIEPTDPSVTALGVQWHPELHWNDSPHDPTGPAVFAWLVAKAGNRFDTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6P1</accession>
    <name>A0A0Q8V6P1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11050</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894867.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52934">
        <property type="protein sequence ID" value="KRC52934"/>
        <property type="gene ID" value="ASE19_11050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1925503at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007165">
        <property type="entry name" value="Phage_holin_4_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37309">
        <property type="entry name" value="PTHR37309"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04020">
        <property type="entry name" value="Phage_holin_4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="130" mass="14020" checksum="CF384965DBE69BB7" modified="2016-01-20" version="1">MIAFLSRWGITAASLALAAGLIDGIWFKGATEGRAEIDDKIVPLLVVALISCGITAWVKPVLTLLSIPFILVTLGLFLIVLNALLLRFTAWLADQADLGFHVEGFWPAVWGAIIISVTTWFLDAIVGVED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6R5</accession>
    <name>A0A0Q8V6R5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11540</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894948.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53018">
        <property type="protein sequence ID" value="KRC53018"/>
        <property type="gene ID" value="ASE19_11540"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="63" mass="7406" checksum="2864BFEE19C68554" modified="2016-01-20" version="1">MSQVVEKAREEDRAAVHHFIRLMGHAPTDEELTAFRQRPVDTERARRRTMGLRPRAARLLVRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Z4</accession>
    <name>A0A0Q8V6Z4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">NAD-dependent protein deacylase</fullName>
            <ecNumber evidence="3">2.3.1.286</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Regulatory protein SIR2 homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">cobB</name>
        <name evidence="5" type="ORF">ASE19_11525</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>H2O + N(6)-acetyl-L-lysyl-[protein] + NAD(+) = 2''-O-acetyl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide</text>
            <dbReference type="Rhea" id="RHEA:43636"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:10731"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17154"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:61930"/>
            <dbReference type="ChEBI" id="CHEBI:83767"/>
            <dbReference type="EC" id="2.3.1.286"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>H2O + N(6)-succinyl-L-lysyl-[protein] + NAD(+) = 2''-O-succinyl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide</text>
            <dbReference type="Rhea" id="RHEA:47668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:11877"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17154"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:87830"/>
            <dbReference type="ChEBI" id="CHEBI:87832"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="3">2 residues (Tyr-53 and Arg-56) present in a large hydrophobic pocket are probably involved in substrate specificity. They are important for desuccinylation activity, but dispensable for deacetylation activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the sirtuin family. Class III subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.286" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894946.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53016">
        <property type="protein sequence ID" value="KRC53016"/>
        <property type="gene ID" value="ASE19_11525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1264438at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034979">
        <property type="term" value="F:NAD-dependent protein deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036054">
        <property type="term" value="F:protein-malonyllysine demalonylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036055">
        <property type="term" value="F:protein-succinyllysine desuccinylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006476">
        <property type="term" value="P:protein deacetylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01412">
        <property type="entry name" value="SIRT5_Af1_CobB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01121">
        <property type="entry name" value="Sirtuin_ClassIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003000">
        <property type="entry name" value="Sirtuin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026591">
        <property type="entry name" value="Sirtuin_cat_small_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027546">
        <property type="entry name" value="Sirtuin_class_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026590">
        <property type="entry name" value="Ssirtuin_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02146">
        <property type="entry name" value="SIR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50305">
        <property type="entry name" value="SIRTUIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0520">NAD</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Deacetylase sirtuin-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="9"/>
            <end position="28"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="88"/>
            <end position="91"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="172"/>
            <end position="174"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="198"/>
            <end position="200"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="216"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="230" mass="25274" checksum="44089A8DD69105C5" modified="2016-01-20" version="1">MPQIVVLTGAGISAESGVPTFRDADGLWEGHRVEDVATPEGFERDRATVQRFYDERRAALRGVEPNPAHRALAELEETLGDALLVVTQNIDDLHERAGSQRVVHMHGELLKALCRSCGIASPWEGTLLDEPACPGCGEPDLRPDVVWFGEVPYEMDRITDALTEASHFVSIGTSGAVYPAAGFVQHARRHGARTLELNLEPSEGTHFFHEARHGRAGDLVPVWAREVLWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V745</accession>
    <name>A0A0Q8V745_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Bacterial proteasome activator</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_12180</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Forms a homooligomeric, either hexameric or heptameric, ring-like structure which stacks co-axially with the proteasomal alpha-rings.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the Bpa family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895057.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53130">
        <property type="protein sequence ID" value="KRC53130"/>
        <property type="gene ID" value="ASE19_12180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1767315at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000502">
        <property type="term" value="C:proteasome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061136">
        <property type="term" value="P:regulation of proteasomal protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019695">
        <property type="entry name" value="Proteasome_act"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10759">
        <property type="entry name" value="DUF2587"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0647">Proteasome</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="162"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="27"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006639"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011402"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00014831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="195" mass="20814" checksum="AA51DB1182A16A50" modified="2016-01-20" version="1">MTESGDEQIVVVGPDGQPIGKVPASAVEQRDDGDHDDDGEHSIGDLVEQPAKVMRIGSMIRQLLEEVKAAPLDEASRNRLAAIHRSSIAELEQGLAPELVEELERLSLPFSEDVTPSEAELRIAQAQLVGWLEGLFHGIQTAIYAQQMAARAQFEQIRRALPPGMAMGGPAADPSAPGTTPGESGDEPRSGGMYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V759</accession>
    <name>A0A0Q8V759_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11875</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53080">
        <property type="protein sequence ID" value="KRC53080"/>
        <property type="gene ID" value="ASE19_11875"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="85" mass="9103" checksum="97200899C6C7C41C" modified="2016-01-20" version="1">MMRYMRSSDTQETTWRRTVIPVLAAIGLGASLVLGIVNFNLLTGGSQTLSNALLVVIGGIFVAGVLTAAALKRLQPSVYQRIGRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7A3</accession>
    <name>A0A0Q8V7A3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12040</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53110">
        <property type="protein sequence ID" value="KRC53110"/>
        <property type="gene ID" value="ASE19_12040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="79" mass="8317" checksum="05223DE1C0A5BA66" modified="2016-01-20" version="1">MATVTEICEAGCREGGVQRAIEVRGQAVMQGERRARTPAQSWLGGRLDGARVVPMAAGPRDALGYRLRALLGGGPGRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7L7</accession>
    <name>A0A0Q8V7L7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">PA-phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12205</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895062.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53135">
        <property type="protein sequence ID" value="KRC53135"/>
        <property type="gene ID" value="ASE19_12205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="869726at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003951">
        <property type="term" value="F:NAD+ kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017438">
        <property type="entry name" value="ATP-NAD_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001206">
        <property type="entry name" value="Diacylglycerol_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016064">
        <property type="entry name" value="NAD/diacylglycerol_kinase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036938">
        <property type="entry name" value="P_Acid_Pase_2/haloperoxi_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000326">
        <property type="entry name" value="P_Acid_Pase_2/haloperoxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045540">
        <property type="entry name" value="YegS/DAGK_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00781">
        <property type="entry name" value="DAGK_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01569">
        <property type="entry name" value="PAP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19279">
        <property type="entry name" value="YegS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00014">
        <property type="entry name" value="acidPPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00046">
        <property type="entry name" value="DAGKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111331">
        <property type="entry name" value="SSF111331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48317">
        <property type="entry name" value="SSF48317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50146">
        <property type="entry name" value="DAGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359770" evidence="2">
        <location>
            <begin position="29"/>
            <end position="527"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="160"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="186"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="DAGKc" evidence="3">
        <location>
            <begin position="225"/>
            <end position="355"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="527" mass="56319" checksum="F7EA3F54B3FFE7AD" modified="2016-01-20" version="1">MLDRPRQTPLLASLALLALFAGVALAVAADWSWVVDIDHEGSDARGWAADQSWLEHPLRAIEIAFGTLWMTVASAVFAVAMFVKGHRRAGVLIAATMATTALVTYLTKVAVGRGRPVWQDPEYFLHSNAFPSGHTSASATFCGLVILLAVMLVRRAGIRRLISTVAVLAFVLVAADRILLGRHYPSDVLGGTLLGVGVLLLGVALYSPLPRSHALKAEPLPEAFPSARRLAVVLNPIKVESVEQFQSMVTQMALDAGWNAPRWYLTTVEDSGTGQAEQASVEGADLVIVCGGDGTVREVCAELAGTGIPVGVVPAGTGNLLARNLEIPLFIRAAIDIALTGQDRAIDMVAVEGDGIEPSHFMVMAGMGFDAAIMEGVNEDLKKKVGWLAYVLSALKGLMFPAMKLEISIDDMPFTKHRARTCVIGNVGSLQGGMVLLPDAAIDDGLLDVVLLYPRRFLSWIPLVLRVLTRREHNAGESVARMTGRKVVVRAAGGVPRQLDGDTIGIGTELSMECIHGRVLVRVPRTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7P6</accession>
    <name>A0A0Q8V7P6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Zn_protease domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12920</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895718.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53256">
        <property type="protein sequence ID" value="KRC53256"/>
        <property type="gene ID" value="ASE19_12920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1576021at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008503">
        <property type="entry name" value="Put_Zn_protease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05618">
        <property type="entry name" value="Zn_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="SSF50630"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Zn_protease" evidence="1">
        <location>
            <begin position="12"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="18212" checksum="9720E53CCFF6A014" modified="2016-01-20" version="1">MVSPHSSSPPVVAGWREWVRLPGLGVGPVKAKLDSGARTSALHAFDLTHFERDGADWVHFSVHPWQRSAEDAVYVECPVHDRRTIRSSTGHTQERFVVLTELELLGTTVTTEVTLTRRDEMGFRMLVGREALRQGFLVDSGRSYLGGRPPRKVRRKNRGVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7X0</accession>
    <name>A0A0Q8V7X0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13650</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897117.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53386">
        <property type="protein sequence ID" value="KRC53386"/>
        <property type="gene ID" value="ASE19_13650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1042165at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359798" evidence="1">
        <location>
            <begin position="28"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="234" mass="24344" checksum="FDCDD21DF17129BF" modified="2016-01-20" version="1">MKLSGPSFRLVAAGALLSATLAGCGSSDDGEEASGEPLVGTFRLDAGHCDAKGVTGSYFRMIQPGGTVEKGGYFLNPDSKCPDQSYSVAVAGTDGGLVTGTFQPGPKAAFSPQGDALAGQITRPGTFTAIKFAISTQSVDPGTGEELPRPEIRNDDGVLSGQLTAWTAGWNNLYFNQGSPKPDGSEKGLTSPVEGTYDEDSGHFELSWSSTIEGGPFDRFSGYWHLEGTFVAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V840</accession>
    <name>A0A0Q8V840_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative membrane protein insertion efficiency factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14015</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Could be involved in insertion of integral membrane proteins into the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0161 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897053.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53450">
        <property type="protein sequence ID" value="KRC53450"/>
        <property type="gene ID" value="ASE19_14015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1912220at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00386">
        <property type="entry name" value="UPF0161_YidD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002696">
        <property type="entry name" value="Membr_insert_effic_factor"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33383">
        <property type="entry name" value="PTHR33383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01809">
        <property type="entry name" value="YidD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01234">
        <property type="entry name" value="Haemolytic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00278">
        <property type="entry name" value="TIGR00278"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="63"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="68"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="101" mass="10894" checksum="C790D674BD22DDC0" modified="2016-01-20" version="1">MKWLLIGLVRAYQLLLSPLLGPTCRYYPSCSAYAVEALRVHGAFKGTWLAGRRLLRCHPWSPGGVDHVPPRRGHRHDADGAAHTPDLLPASAGGSDSQLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V858</accession>
    <name>A0A0Q8V858_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14100</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897037.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53466">
        <property type="protein sequence ID" value="KRC53466"/>
        <property type="gene ID" value="ASE19_14100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1087129at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="34"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="460" mass="50091" checksum="D9CFBA24EB86E8B9" modified="2016-01-20" version="1">MSASVRNGEVSFWWQQVGLPTTRRPALPGDTEADVCVVGAGYTGLWTAYHLKERQPELRVVVLESRFAGFGASGRNGGWLTNSVTGGREQYVARHGRDAAIAQQRAMNEAVRAVVDVAAREGIDAGIHLGGELTVARTPAQLARLGAAAAAEQEWPHTDVELLDATALRERIRVADAVGGMWHPHCARLQPARLAHGLALAAERRGVVIHEDSHVEEIRPGSARTRHGVVRAPYVIRATEGFTPTLRGERRTWLPMNSSLIVTEPLPAATWQELGWEGRETLGDLAHVYMYAQRTADDRIAFGGRGVPYRYGSRVDTDGTTQQRTIDGLTALLRQFFPAAADVPVAHAWSGVLGVPRDWSATVGLDRTTGLGWAGGYVGTGVTATYLAGRTLADLVLAHDTELTRLPWVGHRTRRWEVEPLRWIAVQALYGAYRAADRAEARGRATTSPLARIADRISGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V876</accession>
    <name>A0A0Q8V876_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cation transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_14180</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897021.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53482">
        <property type="protein sequence ID" value="KRC53482"/>
        <property type="gene ID" value="ASE19_14180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="948593at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1510.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002524">
        <property type="entry name" value="Cation_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036837">
        <property type="entry name" value="Cation_efflux_CTD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027469">
        <property type="entry name" value="Cation_efflux_TMD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01545">
        <property type="entry name" value="Cation_efflux"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160240">
        <property type="entry name" value="SSF160240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161111">
        <property type="entry name" value="SSF161111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01297">
        <property type="entry name" value="CDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="34"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="64"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="102"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="136"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="168"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="197"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="31904" checksum="AF1077D1BD48254E" modified="2016-01-20" version="1">MGVGHGHGHTASPGGSGGSGAAAGHAGGRHRWRLAISFGLIAAFFVVELVVGIVSGSLALISDAGHMAADVVALGAALVATKIATREDSSGRRTYGSYRAEVFASGLAVLMMLGVSVYVVVEAIGRIGEDVEVETGPMLLVGLLGLLVNLAALLLLRAGAKDSLNVKGAYLEVVADTAGSVGVLAAGGLILATGDGIWDTVVAFLIGGFVAVRAVVLGREVLAVLGQHVPAGMEVETVTASLAAVEGVCDVHDLHVWTLTSGMHVATAHLVLAEGADAALALRAGQAVLREQHQIEHATLQVEGHRSSACDEVSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8B3</accession>
    <name>A0A0Q8V8B3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RNA polymerase subunit sigma-70</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_13740</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897099.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53403">
        <property type="protein sequence ID" value="KRC53403"/>
        <property type="gene ID" value="ASE19_13740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1992113at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="19"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="7">
        <location>
            <begin position="116"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="170"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="190" mass="21074" checksum="980322569F27F428" modified="2016-01-20" version="1">MDTTTSSPREREQRFRELYDAAYVDLLRFVSRRVHPTHAEDVVGDVLLVAWRRLDDVPVELSDARAWLFGVARKTLQNARRREDRYDAVAVRLAEAGHEPADAGLHPDLVSRRVDIAAAWPHLSASDQEAIALAVLDGLSAPEAAAVLGISPTAFRLRLSRARRALRRRIDTTTAGDAVPGHPASERSTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8C4</accession>
    <name>A0A0Q8V8C4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Antitoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14745</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896922.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53580">
        <property type="protein sequence ID" value="KRC53580"/>
        <property type="gene ID" value="ASE19_14745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2090208at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="76" mass="8172" checksum="6B3067D67490E336" modified="2016-01-20" version="1">MRTTLDVDDDVLLAVKERARREKRSAGAVLSELARAALNSGGAETLRADYGFRPLPSTGAVVTNALIDDMREELGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V928</accession>
    <name>A0A0Q8V928_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14275</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53686">
        <property type="protein sequence ID" value="KRC53686"/>
        <property type="gene ID" value="ASE19_14275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="845205at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="SSF48403"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="repeat" description="ANK" evidence="1">
        <location>
            <begin position="9"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="repeat" description="ANK" evidence="1">
        <location>
            <begin position="42"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="200" mass="21139" checksum="C0C0F0835C5E01F6" modified="2016-01-20" version="1">MSADNPPADPDTALLRAAERGDADAVAVALRAGADIEARDGHRRTALLLASTFDRVAVAELLVAMGADPDALDDRHDTPWLVTGVTGSVAMLEALLPAHPDLTIRNRYGGLSPIPAGERGHVDYVRRVVRTGVDIDHVNDLGWTAMLEAIILGDGSDAYVEIVRLLLAAGADPGIADRDGVTPLEHAERSGYDEIAALLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V945</accession>
    <name>A0A0Q8V945_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07240</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895302.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53870">
        <property type="protein sequence ID" value="KRC53870"/>
        <property type="gene ID" value="ASE19_07240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="255"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="336" mass="36116" checksum="FD3A3F0A51D13404" modified="2016-01-20" version="1">MTSRPSPLDLVADVAAICVEPTPAAARAAAVLERIGEAIPLEAAALSTFDPVEGRHFTVAEIGYSDPVLTYLNDGFVNEDPAFLTMRFRNPRPLRWCDIPNYRNMFSAHEVFIPGGFAEGSTTCLFTRDGRYTGALHLSSDSPLPISDSAVETLIALQRVIAPVMDAMRPPEGQTWTDLLEEAGEAALLTTDRRLVTLPGLRRDKWLADDSPLTAELLANADGTVHRFAWVSPTGRCHEVRRTRLAAGVLVTLREAAAPYRLSPREVQVLTLVAVGLGNPDIGLALSLSPRTVATHVEHILAKLGCATRVAAASKAVAEEIVPLPGPPATPLLVRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9A2</accession>
    <name>A0A0Q8V9A2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Carbonate dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_07545</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895357.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53925">
        <property type="protein sequence ID" value="KRC53925"/>
        <property type="gene ID" value="ASE19_07545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="237367at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019829">
        <property type="term" value="F:ATPase-coupled cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00371">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017969">
        <property type="entry name" value="Heavy-metal-associated_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006121">
        <property type="entry name" value="HMA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036163">
        <property type="entry name" value="HMA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027256">
        <property type="entry name" value="P-typ_ATPase_IB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00403">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00120">
        <property type="entry name" value="HATPASE"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55008">
        <property type="entry name" value="SSF55008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01525">
        <property type="entry name" value="ATPase-IB_hvy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01047">
        <property type="entry name" value="HMA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50846">
        <property type="entry name" value="HMA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="94"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="118"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="155"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="196"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="352"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="378"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="699"/>
            <end position="716"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="722"/>
            <end position="740"/>
        </location>
    </feature>
    <feature type="domain" description="HMA" evidence="9">
        <location>
            <begin position="4"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="746" mass="77101" checksum="2449FAF0381F3D2F" modified="2016-01-20" version="1">MTTDVELVLTGMTCASCANRIERKLNKLEGVTATVNYATEKAKVSYDDTIRPEDLVSAVEQAGYGATLPRPPAAASDGVGVEEPDPSAPLRQRLLVSAVLTVPVVAMAMVPALQFDNWQWLSLTLAAPVVVWGSWPFHRAAWTNLRHGTSTMDTLISLGTLAALGWSLYALFWGTAGMTGMKHPFELTIERSDGSGNIYLEAAAGVTTFILAGRYFEVRSKRRAGAALKALLELGAKEAAVLGPDGVSEVLVPIGELKADDLFVVRPGEKVATDGIVESGSSAVDVSMLTGESVPVEVAAGDAVVGGCVNAGGRLVVRATRVGGDTQLAQMARLVEDAQNGKAQVQRLADRISGIFVPIVLLLAAGTLGFWLGTGNGAGAAFTAAVAVLIIACPCALGLATPTALMVGTGRGAQLGILIKGPEVLESTRTVDTIVLDKTGTVTTGRMALRDVVADDGEDADQVLRYAGALEDASEHPIARAIATAAREQGGLPTVEDFANVEGLGVQGVLVDGEASHAVLVGRPQLLAEWSQHLTPALQEAFAEAQRTGGTAVAVGWDGRARGIVVVADAVKPTSAAAIAQLRALGLRPVLLTGDNAVVARTVAAEVGIADEDVIADVLPADKVDVVARLQGEGKVVAMAGDGVNDAAALAKADLGLAMGTGTDVAIEASDLTLVRGDLQVAVDAIRLSRRTLATIKGNLFWAFAYNVAALPLAAAGLLNPMLAGAAMAFSSVFVVSNSLRLRRFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9M1</accession>
    <name>A0A0Q8V9M1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07380</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895328.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53896">
        <property type="protein sequence ID" value="KRC53896"/>
        <property type="gene ID" value="ASE19_07380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1068442at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="431" mass="47037" checksum="E01E5FADD4ECDDCF" modified="2016-01-20" version="1">MTTDVGVHRPMTTPEKYYTFLDHQWPSNVMISADLARCFEHETVAAVWDEFRARRILGRAVATDDLTLADPGVAPGHLTTRELPTDAWDQVFDEEATVRHELGLAPRLLHLCSREEGRSRLILLGHHALLDGRIGLGEVQWLVRLLDGQDIPEQQELSTPPPPVEDAHAWQQDRTAMFELLRTIRARNLELGTPGPEWWPETSVPARPRLQQLVLEPEPAAAFLAAGRAHRSSAFSTVAAAWLGIVARELCDADAPGGDGRATVQLAVPADLSTPSPTPDAPTAMSVAVLARPFRVDPTDPWTLSGEIVATIREALARGEGDLFFQLTRTEKVEDLETGRNLVAAALSAGPPCLVVSNMGVIDPGTDPEWLTFVQGQLAPAPNQVVFVATLSYRGRLVHTIATDDNRIDVDRSAGLIATYRAFLDDVAAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9P4</accession>
    <name>A0A0Q8V9P4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">4-aminobutyrate aminotransferase</fullName>
            <ecNumber evidence="5">2.6.1.19</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_09165</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.19" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894538.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52601">
        <property type="protein sequence ID" value="KRC52601"/>
        <property type="gene ID" value="ASE19_09165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1322538at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034386">
        <property type="term" value="F:4-aminobutyrate:2-oxoglutarate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009448">
        <property type="term" value="P:gamma-aminobutyric acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004632">
        <property type="entry name" value="4NH2But_aminotransferase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00700">
        <property type="entry name" value="GABAtrnsam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="449" mass="46612" checksum="7AB3BEB64808355E" modified="2016-01-20" version="1">MSTDTTTPTQARRLLTPLPGPRSRALMERKTSAVANGVGTTLPVFAAHAGGGLLEDVDGNILIDLGSGIAVTTVGASEPRVVAAVQQQVADFTHTCFMVTPYEGYVAVAEHLNRLTPGDHEKRSVLFNSGAEAVENAVKIARHATGRDAVVVFDHAYHGRTNLTMAMTAKNMPYKHGFGPFASEVYRAPLSYPYRDGGLDGATAAAHAIDVIEKQVGAENLAAVVIEPIQGEGGFIVPADGFLPALVAWCRANGVVFVADEVQSGFARTGALFACDHEGVVPDLIVTAKGIAGGLPLSAVTGRAELMDAVHPGGLGGTYGGNPIACAAALAVIETIEQDGLVERARAIEERITTRLRAIGTTDGRIGDVRGRGAMVAVELVEAGTTTPDPALAKEIATRSHAEGVIVLTCGTYGNVLRFLPPLSITDAQLDEAFDVIEAALAAVPAVAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9T3</accession>
    <name>A0A0Q8V9T3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">7,8-dihydroneopterin aldolase</fullName>
            <ecNumber evidence="1">4.1.2.25</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08025</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>7,8-dihydroneopterin = 6-hydroxymethyl-7,8-dihydropterin + glycolaldehyde</text>
            <dbReference type="Rhea" id="RHEA:10540"/>
            <dbReference type="ChEBI" id="CHEBI:17001"/>
            <dbReference type="ChEBI" id="CHEBI:17071"/>
            <dbReference type="ChEBI" id="CHEBI:44841"/>
            <dbReference type="EC" id="4.1.2.25"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; tetrahydrofolate biosynthesis; 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 7,8-dihydroneopterin triphosphate: step 3/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DHNA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.2.25" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895444.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54012">
        <property type="protein sequence ID" value="KRC54012"/>
        <property type="gene ID" value="ASE19_08025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1858654at2"/>
    <dbReference type="UniPathway" id="UPA00077">
        <property type="reaction ID" value="UER00154"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004150">
        <property type="term" value="F:dihydroneopterin aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046656">
        <property type="term" value="P:folic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00534">
        <property type="entry name" value="DHNA_DHNTPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006156">
        <property type="entry name" value="Dihydroneopterin_aldolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006157">
        <property type="entry name" value="FolB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043133">
        <property type="entry name" value="GTP-CH-I_C/QueF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42844">
        <property type="entry name" value="PTHR42844"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02152">
        <property type="entry name" value="FolB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00905">
        <property type="entry name" value="FolB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00525">
        <property type="entry name" value="folB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00526">
        <property type="entry name" value="folB_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0289">Folate biosynthesis</keyword>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FolB" evidence="2">
        <location>
            <begin position="5"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU362079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="136" mass="14883" checksum="05BE2097039DC9AE" modified="2016-01-20" version="1">MTDELSILGIECFAHHGVFDHERRDGQVFTIDLTLGVDTRPAAASDDLAETVDYGGLVDRVVAAVERDPVDLIETLAQRIADVVLLDRRVEWARVTVHKPDAPIQATFADVRLTITRHREAGDAAGNRTGKEEAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9V9</accession>
    <name>A0A0Q8V9V9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">AAA_31 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_07330</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895319.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53887">
        <property type="protein sequence ID" value="KRC53887"/>
        <property type="gene ID" value="ASE19_07330"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004713">
        <property type="term" value="F:protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045226">
        <property type="term" value="P:extracellular polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005702">
        <property type="entry name" value="EPS_synthesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01007">
        <property type="entry name" value="eps_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0829">Tyrosine-protein kinase</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359849" description="AAA_31 domain-containing protein" evidence="7">
        <location>
            <begin position="21"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="165"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_31" evidence="8">
        <location>
            <begin position="263"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="458" mass="49351" checksum="AA8EB979601ECFCF" modified="2016-01-20" version="1">MLRRRWLTVVSLVGVSLAVASLLNFVLLTPKYESDSTVFLSVDVRDTTDAYATLLFASNRAESYAKVIKSTELAAEVIDELNLKITPEDLSSRTNAEVVESTSLIKISVKDENARDAQQIADVMTDRFTKYIGKIEAPGGEGSSPIVARVTDKASYNPSQVSPNILLNMIVAFLLGILLGVALALAREILDRTIRTADHVADITPAPVLASIGFDGDIKSAPLLTDLGGFAARTEAFRLLRTNLQFIDLDHRPRCLVITSAVPGEGKTMTSTNLAVALAQTGRNTLIIDADLRRPRVASTLGLDPAIGLTTALVGKTEIHDAIQVHEPSGLHVLASGAKPPNPTEILQSRITQDLVERLRASYDIVIIDAPPLLPVADASVLAKLADGVIIVVRHAKTTRDQVTEAVNRLNQVGARLYGVVVNMVARRAVGSYYYYYYEETAPSGRGSNSSSGGRRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA40</accession>
    <name>A0A0Q8VA40_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07005</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54190">
        <property type="protein sequence ID" value="KRC54190"/>
        <property type="gene ID" value="ASE19_07005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002403">
        <property type="entry name" value="Cyt_P450_E_grp-IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00465">
        <property type="entry name" value="EP450IV"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0349">Heme</keyword>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="451" mass="50577" checksum="F8FBAB90AC0837AD" modified="2016-01-20" version="1">MVPAIIKGTGHLPEMRVDPIALFHRVRDECGDLGRFRLADKQVVLVTGAEANEAFFRAPESVLDQAAAYPFMTPIFGKGVVFDASPEERQQMLKNQALRGDMMRGHAQTIEAEIRRMVAGWGDEGEIDLLDFFAELTIYTTSSCLIGKPFRDQLDGSFAEIYHRLEHGTDAIAYVDPYADIENFKIRDEAREELVAKVQSIIAARVAQGEIPKEDRDLLDVLIAVGYDAEMVTGIFISMMFAGHHTSSGTASWAMIELLRNPAVMGDVVAELDALYADGSEVSFQALRSIPVLEAALKETLRLHPPLVILMRLVQEDFDLMGHTIPAGTVLAASPRVSNRIEEDFPKAEEFDPGRYVDPRQEDLQNRWTWIPFGAGKHRCVGNAFAMMQMKAIFSVILRDFSFEPAQELDTYRDDFTKMVIQLAQPARVKYRRRFRVSRLAGARTSTTELS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA55</accession>
    <name>A0A0Q8VA55_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_07865</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53983">
        <property type="protein sequence ID" value="KRC53983"/>
        <property type="gene ID" value="ASE19_07865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="85230at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05829">
        <property type="entry name" value="Sortase_F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000033">
        <property type="entry name" value="LDLR_classB_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001258">
        <property type="entry name" value="NHL_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005754">
        <property type="entry name" value="Sortase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023365">
        <property type="entry name" value="Sortase_dom-sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042001">
        <property type="entry name" value="Sortase_F"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01436">
        <property type="entry name" value="NHL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04203">
        <property type="entry name" value="Sortase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00135">
        <property type="entry name" value="LY"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63817">
        <property type="entry name" value="SSF63817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51125">
        <property type="entry name" value="NHL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359842" evidence="5">
        <location>
            <begin position="18"/>
            <end position="1336"/>
        </location>
    </feature>
    <feature type="repeat" description="NHL" evidence="3">
        <location>
            <begin position="536"/>
            <end position="566"/>
        </location>
    </feature>
    <feature type="repeat" description="NHL" evidence="3">
        <location>
            <begin position="582"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="673"/>
            <end position="706"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1336" mass="136708" checksum="951791013122CB46" modified="2016-01-20" version="1">MACGTLAIVGTTTPAAAAAAAAPGDSCAPLGSSGATTRLPIETGTDYPDHFAVDADGSLLVTDSGAGQVVRLTRSSSGWNRSVVATGVGNVTSIAIDDSDGALWVVRYPDQLVKLTPSGPGYTVADTISGGFLSGLGGIDVAPDGDLFVSINAGSFGSGGVVRLAAGSGMAQSQVVGGLDAPHQVTVDEHGAVYVASYTRVVKAVRNGGSWIRTDAVTGLGSGQGVAVDSTGTIWLSTSEDPGVWTAAPSDGGYAAPQLYAPWGAEYATTLAITEDDTVFVSDFERLWAFGPTTVQAVDDTVSASGPVTTDVRANDTTTTTTLARPSVVGAPAHGTATVNDDGTITYTPTPGWAGTDHYAYEVRDDASPAQVCSVATVTVTVTGNDGCFGTPSSALGYRVEGTHDLAEPTGIAVDARNIVFISDVGQEKVIGWGPGSGPSVVDGHAGLDPQGIAVDADGDVYYADEGAHEIVRMTWSESESGYTDRTVLASGLQRPSGVAVDPDGNVFFAENSSGHVHRLTPSGSGYTSSFVASGFDRPRGIALDTAGNLYVADSTHDRVVKLTRSGADYDRSVISTSVDAPTGVGVAPDGTVYVGDSGHHRVLQLTPDGEGYAQSVVAVWGSHVPTWVAAFGTDNLLVTDSDSGEVVIMGRVGITAEEDADATTAPDAVTTDVRTNDTLPDGMPVSAPTIGSQPPGGSATVEDDGSITYAPDAGFSGRDRYTYENRVKEKSTQQIPDLGTYEVDIDICAVGRVTVDVANVFTPGPGVSTPQNQQVVTPLSGIATTNGKPLDPAGVSVEQDGAHGTVMTDGSTGAVTYLPHHGFTGTDSFELKVCDTSAPVQCSEVTVPVTVGGNAVSAADANETTSVGTPVTTDVLATTTSSSGQELAAPTVVDEPDHGTTTVGEDGVTYTPEAGFSGEDAYDVRVCDTSTPSPVCDTATVAITVQNVFIDDAVLSTAYETPVTVPVGDLTTTSGKPLDPSSATLVTAATQGTVRLDGEPDTVHYAPNDGFSGDDTFVLRVCDTSAPVQCHDVTVTVTVGAKAEPGQPTLTVDAPSAVALKVDRAGRTLPASLSARVTISGVRTARASVGTATLYGPVTRLSSTMCTAARAVASVPFIPANGTLSTGPVPVKRPGYYTWVVSTSADDDNAAARSRCGARAASTLVHRMAIGKLRFETGFTGTTPSGTRRSQPARFTIPALGLRADLVTSGIRRGAMVIPTSIAKGGWLARSAAPGDLVGTTVLAGHVSDRRDRPGAFGKLRRARPGQVVTVRAGSGRIQKYRITSVTSQARTRGLTVSTTGPHRLVLVTCTGKVTYRNGHFHYTKNLVVTAVPIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA87</accession>
    <name>A0A0Q8VA87_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">HpcH_HpaI domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_08580</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895536.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54104">
        <property type="protein sequence ID" value="KRC54104"/>
        <property type="gene ID" value="ASE19_08580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1107373at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005000">
        <property type="entry name" value="Aldolase/citrate-lyase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011206">
        <property type="entry name" value="Citrate_lyase_beta/mcl1/mcl2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03328">
        <property type="entry name" value="HpcH_HpaI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015582">
        <property type="entry name" value="Cit_lyase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HpcH_HpaI" evidence="5">
        <location>
            <begin position="13"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 4">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR015582-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR015582-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="295" mass="30587" checksum="DBA583E7B75B05B3" modified="2016-01-20" version="1">MSVVNVAQVTRRSALCVPAGDDRKLAKALASGADEVVIDLEDAVAHDDKDRARAQLAAFDWDAAAVPEGVALAVRVNAPGSPWCHRDLEVVVRLAGVSSVVLPKVESRADVGFAERLLDGLEAEAGRSTPLGVQALVETATGLLGLPDVVRDVRRLTSVIVGYADLAASLGRERDVDLASWRGVQDAVVMNSRAAGIAAVDGPFLGVSADDVFRAAVDAAAGLGFDAKWTIHPRQVGAVNERFTPSPGRVDHARRVLATLASAAGDGRGAAVVDGALVDEAMAKDARRVLAKAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAG6</accession>
    <name>A0A0Q8VAG6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08845</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895582.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54150">
        <property type="protein sequence ID" value="KRC54150"/>
        <property type="gene ID" value="ASE19_08845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1768241at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070967">
        <property type="term" value="F:coenzyme F420 binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016651">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006740">
        <property type="term" value="P:NADPH regeneration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010185">
        <property type="entry name" value="NpdG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028939">
        <property type="entry name" value="P5C_Rdtase_cat_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03807">
        <property type="entry name" value="F420_oxidored"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01915">
        <property type="entry name" value="npdG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F420_oxidored" evidence="1">
        <location>
            <begin position="4"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="216" mass="22407" checksum="BBE67BA97D44FEE8" modified="2016-01-20" version="1">MTTISILGGTGPQGRGLARRFADGGLKVVLGSRTAERADEIAAELAAETGGDVTGADNRGAAATGDIVLVVVPWDGHAQLLTELREPLRGKVVVDCVNPLGFDKLGPYALPVLEGSAAEQAQQLLPDSTVVAAFHHLSAVLLEDPEVTDLATDVLVLGDDREAVDAVIGLAAVLPGVRGVFGGRIRNAHQVEAMTANLIAINKRYKAHAGVRITDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC31</accession>
    <name>A0A0Q8VC31_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04980</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894260.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54821">
        <property type="protein sequence ID" value="KRC54821"/>
        <property type="gene ID" value="ASE19_04980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1191224at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359892" evidence="3">
        <location>
            <begin position="37"/>
            <end position="527"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="478"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="134"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="420"/>
            <end position="457"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="527" mass="52590" checksum="E05658D62D2DC204" modified="2016-01-20" version="1">MTRTTRRTRLLITGGILASTLPLTGAPGLTGQAAQAEDGAPAYGGFTTTAWSTPIRIEVYEPSLPIPVDAGIAQLEFDMGYSKVKADSGMSTGRSSLFWPGDPVGEGLKTFAEQLGLPPTPLTANGYPVQVNSQYPGDTPTQKDNKIPGSIQQTTSGDRTAIAETGFTPDGVVLGPDADEGTGGGTTGNPLGDLANQLQGLLGGAKKASAPGNPLGMIADVDGYVSVSRMDATKGPVNAASRATLGEVRLLGGLITLGGVETVAKVTTDGKTAKASGKAVYGKMVIAGQEFGIGPDGAIVSGKTTPIPGLSDLPADALQQLGITFVVPKPVRTVEGDQATSESAALKVIIETKLLSPLLKALPLSSITKLIPDLPGQAATLKGVLSGLGSLSPKIVLTLGIARATADTVPPISITPVTPGTVTPPVASSPKPAQGSVGVPPVAGAPTPAGAAPTPAAGTPVTDLVDAAPASSGLPDLYSIPGMLLIAAFALAAVAGSWFRRLGVAALGAGAPCAHGLESGLPDLRKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCD0</accession>
    <name>A0A0Q8VCD0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nitroreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13245</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895777.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53315">
        <property type="protein sequence ID" value="KRC53315"/>
        <property type="gene ID" value="ASE19_13245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1847197at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="2">
        <location>
            <begin position="10"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="Nitroreductase" evidence="2">
        <location>
            <begin position="92"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="159"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="159"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="22194" checksum="B0C3131EF73DD5D7" modified="2016-01-20" version="1">MNPVAIAEPLRSRWSPSVFDAQHELTDAEITRLLEAAQWAPSSGNRQPWRYVVATRGSAAHRVLVPHLSRGNSGWVPRASVVFLSVVVLGTDGDELKDVLIPAHDVGQASAHLTLQAHAMGLHAHQFGGFDHTAVAAGLGIPDDARVLAGIAVGVRGNPEEVPERDAERDQRARSRRPLAETAYDDRWDHPWPGLAPSGPTTAEQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD71</accession>
    <name>A0A0Q8VD71_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">6-carboxy-5,6,7,8-tetrahydropterin synthase</fullName>
            <ecNumber evidence="5">4.1.2.50</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Queuosine biosynthesis protein QueD</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_06325</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>7,8-dihydroneopterin 3'-triphosphate + H2O = 6-carboxy-5,6,7,8-tetrahydropterin + acetaldehyde + 2 H(+) + triphosphate</text>
            <dbReference type="Rhea" id="RHEA:27966"/>
            <dbReference type="ChEBI" id="CHEBI:15343"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18036"/>
            <dbReference type="ChEBI" id="CHEBI:58462"/>
            <dbReference type="ChEBI" id="CHEBI:61032"/>
            <dbReference type="EC" id="4.1.2.50"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Purine metabolism; 7-cyano-7-deazaguanine biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the PTPS family. QueD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.2.50" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894460.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55051">
        <property type="protein sequence ID" value="KRC55051"/>
        <property type="gene ID" value="ASE19_06325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1770189at2"/>
    <dbReference type="UniPathway" id="UPA00391"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070497">
        <property type="term" value="F:6-carboxy-5,6,7,8-tetrahydropterin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007115">
        <property type="entry name" value="6-PTP_synth/QueD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038418">
        <property type="entry name" value="6-PTP_synth/QueD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12589">
        <property type="entry name" value="PTHR12589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01242">
        <property type="entry name" value="PTPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0456">Lyase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001293"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00018141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC55051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="138" mass="15209" checksum="E57A657EA090584B" modified="2016-01-20" version="1">MFRVTVRDHIMVAHSLQGEVFGPAQRLHGATFVVDATFAGPALDADGILVDIGRATEVLHEVLGRLHYRNLDELDELDELDELDRQNTSTEVLARWVADRLAARASDGDLGPGGRDLTGIQVTLHESHVAWASYERVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDK0</accession>
    <name>A0A0Q8VDK0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Carbon monoxide dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06670</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894512.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55110">
        <property type="protein sequence ID" value="KRC55110"/>
        <property type="gene ID" value="ASE19_06670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="117507at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908">
        <property type="entry name" value="PTHR11908"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01315">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="SSF54665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ald_Xan_dh_C" evidence="2">
        <location>
            <begin position="27"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="796"/>
            <end position="818"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="818" mass="87481" checksum="C5167E9DFB6DA8B2" modified="2016-01-20" version="1">MTATQEPAAQQEIGRDRRRKEDQRLITGRTRWTDNITLPGMLHLAMVRSPFPHARITNIDTAAAKAATNVVAVYTGADLGEGQGACINAWPVVTDQVTPAHLPMPIDRVAFAGETVAVVVARSAAAARDAAELVEVDYEELPAALDLKEAAAAHENGGAIAHPDLGTNVSAVWRFDSAEAGTGGDVEQAIAEARENGIVIEREYRQQRLIPAFMEPRSTVVDPTGEQITVWSATQVPHILRFAMAATTGVPESKIRVIAPDVGGGFGGKLQQTPEEMITFAVARRLGKPVKFTETRSESLLTAHHGRDQWQRLTLAATKEGRVTGLKVDLLADLGAYVAIVGGGVPVLGAFMFNAIYKFPAYQFQTTNVLTNKTWTDAYRGAGRPEATFAIERLMDELANELGKDPLEVRELNWITHEEFPFTTVAGLEYDSGNYEAATARAKEMFGYDALRAEQAERRARGDKVQLGLGVSTFTEMCGLAPSRVLGSLNYGAGGWEHAEVRMLATGKVEVVTGASAHGQGHETAFSQIAADRLGVPFEDVEVLHGDTQISHKGLDTYGSRSLVVGGEALVRALDKVIDKARPVAAHLLEAAADDLEFSGGRFTVKGTDQGMAIQEIATAVFAAHNLPDGMEPSLDSEATYDPVNFNYPHGTHLCAVEVDTETGQVKLRKYVCCDDIGVVINPLIVAGQVHGGLVQGIAQALWEEAVYDENGTLVTGSFVDYLLPTAADTISFEIDHTTSPSTTNSLGTKGVGEAGTIASTPAVVNAVVDALRPYGVHDVAMPCTPERVWRAINEGSPGGETTEAAMPHFDETEGGVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDU5</accession>
    <name>A0A0Q8VDU5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Chaperone protein DnaK</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">HSP70</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Heat shock 70 kDa protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Heat shock protein 70</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6 10" type="primary">dnaK</name>
        <name evidence="10" type="ORF">ASE19_10565</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Acts as a chaperone.</text>
    </comment>
    <comment type="induction">
        <text evidence="6">By stress conditions e.g. heat shock.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the heat shock protein 70 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894778.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52845">
        <property type="protein sequence ID" value="KRC52845"/>
        <property type="gene ID" value="ASE19_10565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="161217at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.34.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00332">
        <property type="entry name" value="DnaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012725">
        <property type="entry name" value="Chaperone_DnaK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018181">
        <property type="entry name" value="Heat_shock_70_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029048">
        <property type="entry name" value="HSP70_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029047">
        <property type="entry name" value="HSP70_peptide-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013126">
        <property type="entry name" value="Hsp_70_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19375">
        <property type="entry name" value="PTHR19375"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00012">
        <property type="entry name" value="HSP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100920">
        <property type="entry name" value="SSF100920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100934">
        <property type="entry name" value="SSF100934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02350">
        <property type="entry name" value="prok_dnaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00297">
        <property type="entry name" value="HSP70_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00329">
        <property type="entry name" value="HSP70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01036">
        <property type="entry name" value="HSP70_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="evidence at transcript level"/>
    <keyword evidence="4 6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="8" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3 6 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0346">Stress response</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="584"/>
            <end position="619"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="8">
        <location>
            <begin position="226"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="8">
        <location>
            <begin position="537"/>
            <end position="564"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="9">
        <location>
            <begin position="601"/>
            <end position="619"/>
        </location>
    </feature>
    <feature type="modified residue" description="Phosphothreonine; by autocatalysis" evidence="6">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC52845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="619" mass="65583" checksum="E04328246B486890" modified="2016-01-20" version="1">MARAVGIDLGTTNSVVAVLEGGEPTVIANAEGARTTPSVVAFAKSGEVLVGEVAKRQAVTNVDRTIRSVKRHMGTDWTTHIGDPVDKDFTPQQISAFILQKLKRDAEAYLGETVTNAVITVPAYFSDAQRQATKEAGEIAGLKVDRIVNEPTAAALAYGLDKGDDQTILVYDLGGGTFDVSLLEIGEGVVEVKATSGDNHLGGDDWDNAIVEWMVKKFKDANGVDLSADKIAAQRLQEAAEKAKIELSSSSDTTVHLPYITHGENGPLHFEERLTRSEFQRLTADLLERTKAPFQNVLKDGGVALSAIDHVVLVGGSTRMPAVTELVKEMLGGKEPNKGVNPDEVVAVGAALQAGVLAGEVKDVLLLDVTPLSLGIETKGGVMTTLIERNTTIPTKRSEIFTTADDNQPSVEIKVAQGERQMWSQNQGLGNFELTGLPPAPRGVPKIEVTFDIDANGIVHVSAKDQASGREQSMTISGGSALSKDDIDRMVKEAEQYAEEDAKRREAVEVRNQGDQLVYTTEKFLADNGDKIPDDVKAEVTGDVEELKAVLADAEADADTLSAAISKLGESSQKMGAAMYAAAEADSAAAGGSTGATGESDDDVVEAEIVDEDTEGDAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEB7</accession>
    <name>A0A0Q8VEB7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Diacylglycerol O-acyltransferase</fullName>
            <ecNumber evidence="5">2.3.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_08400</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 1,2-diacyl-sn-glycerol + an acyl-CoA = a triacyl-sn-glycerol + CoA</text>
            <dbReference type="Rhea" id="RHEA:10868"/>
            <dbReference type="ChEBI" id="CHEBI:17815"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="ChEBI" id="CHEBI:64615"/>
            <dbReference type="EC" id="2.3.1.20"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Glycerolipid metabolism; triacylglycerol biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the long-chain O-acyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.20" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895505.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54073">
        <property type="protein sequence ID" value="KRC54073"/>
        <property type="gene ID" value="ASE19_08400"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00164"/>
    <dbReference type="UniPathway" id="UPA00282"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004144">
        <property type="term" value="F:diacylglycerol O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019432">
        <property type="term" value="P:triglyceride biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045034">
        <property type="entry name" value="O-acyltransferase_WSD1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009721">
        <property type="entry name" value="O-acyltransferase_WSD1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004255">
        <property type="entry name" value="O-acyltransferase_WSD1_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31650">
        <property type="entry name" value="PTHR31650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03007">
        <property type="entry name" value="WES_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06974">
        <property type="entry name" value="WS_DGAT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-0319">Glycerol metabolism</keyword>
    <keyword evidence="6" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="WES_acyltransf" evidence="11">
        <location>
            <begin position="11"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="WS_DGAT_C" evidence="12">
        <location>
            <begin position="277"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF03007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF06974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC54073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="423" mass="46043" checksum="EE336B1E04089C9B" modified="2016-01-20" version="1">MTASPSDPTRLSALDAAYLAVGRRRQQVNSPTFVIEVAGSAPEQDTLLDHVSQCVARMPRLRQRVRRSGLGLRRPLWVEDVSFVLEQHVGVKHVQNEDELRMVVDQCLSEPIDLDKPPWDLRLVTGHSTSGFVLLLRVHHAVGDGDALVNQVLAEFFKSRDDPPILLAPGHRISRRRDAVLGLAELLADTTRRPAPRVAELNGPLGTDRHLHWSTSSVRDYAVAAERHGGSINDIFLTALGGALRDWLGARQLPLPADLAVGVPVNLRSHREAGALGNRLAGFRLHLPLGPSDPTRRHVLVLGRMQALKSGRQLEGAMLEAELSRLVPTPFLGTSMRLRFSRRVVNLMASNIAGPSRPATFIGRRVVSIVPGPPLPPRHRLIAQMSTYANTVSVAVVADSSVGDADAIVASIGEHVSRLVGDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEI6</accession>
    <name>A0A0Q8VEI6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SMI1_KNR4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11555</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894951.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53021">
        <property type="protein sequence ID" value="KRC53021"/>
        <property type="gene ID" value="ASE19_11555"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018958">
        <property type="entry name" value="Knr4/Smi1-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037883">
        <property type="entry name" value="Knr4/Smi1-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09346">
        <property type="entry name" value="SMI1_KNR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00860">
        <property type="entry name" value="SMI1_KNR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160631">
        <property type="entry name" value="SSF160631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SMI1_KNR4" evidence="1">
        <location>
            <begin position="8"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="195" mass="21719" checksum="5CCAB5B0E7E07108" modified="2016-01-20" version="1">MLWGPFEDVDAADLDRVEDQIGERLPDDFRAFLLVAHGGTLPYAVRLPPGDEAGHLIEFSSFAGLRGDWSLSRRWADFPATFMADHLPHGLLEVANDGGGSCLYVDLRPGTRGKVWAFVHGLPEWTGLNRTNMGGEVAESWDAYLDLLTIDEDYARDVWEEAVSSPDASWMTAVTAWLDSALPNWRSRGWARLKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEI8</accession>
    <name>A0A0Q8VEI8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ANTAR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11830</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53072">
        <property type="protein sequence ID" value="KRC53072"/>
        <property type="gene ID" value="ASE19_11830"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005561">
        <property type="entry name" value="ANTAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013655">
        <property type="entry name" value="PAS_fold_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03861">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08447">
        <property type="entry name" value="PAS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01012">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50921">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ANTAR" evidence="1">
        <location>
            <begin position="121"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="209" mass="23530" checksum="7E431876103C23F4" modified="2016-01-20" version="1">MAEQPDTPRVGRFAYDVTTERWKWDDEVFRIHGVEPGAVEPTTAYVLDCKHPEDRDRVERVLTQATLTGEPFSVCYRLHAADGRERRVVLVCEGGVCDTTTEVPVTQLDGYYVDLTHDFARATSEEARGAVAASAEHRATIEQAKGCLMMAYGLDAEQAFAMLRWWSRNRNVKLRDIAAHVTEISTSGQLSHQSLRTAVDRLLHDAPHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEN4</accession>
    <name>A0A0Q8VEN4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH araC/xylS-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11815</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894999.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53069">
        <property type="protein sequence ID" value="KRC53069"/>
        <property type="gene ID" value="ASE19_11815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1785082at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="210"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="312" mass="33277" checksum="5B1D182720F3E9EA" modified="2016-01-20" version="1">MLLFESTELARTEEFLNAHYGPMRVGSTTARPSARIARSASAQISIDRVDFGFDLSYDVDPLDRIALCDITSGTLAGHAPDGSAAETFGQGELFSLSPVGRPYGGTVDHASYTVTLIDPSLLGDVASPGTDEPVRLVGHRPVDAAAARRLRAAIDHLDEMVLSDPVASSSPLVLGAVNRYVAAQVLAAFPTTAAVDRVADSRDAHPATLRRALEHIETHAHLDLTPAEIAAAAHVSIRALQLAFRRHLGTTPMGHLRTVRLARVRRDLEAADPAEASVAQVAARWGFSHQGHFGQAYRSAYGETPGATLRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG17</accession>
    <name>A0A0Q8VG17_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Xanthine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10940</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894846.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52914">
        <property type="protein sequence ID" value="KRC52914"/>
        <property type="gene ID" value="ASE19_10940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="117507at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908">
        <property type="entry name" value="PTHR11908"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01315">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="SSF54665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ald_Xan_dh_C" evidence="2">
        <location>
            <begin position="20"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="610"/>
            <end position="629"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="801" mass="86035" checksum="EE4685C34E0BA870" modified="2016-01-20" version="1">MSAKLVGAKVQRVEDDRFVRGNGRYVDDVAPDALHAAVLRSPHAHARILSIDVDAVLDLDGVHAVWTHEDLEGAMAEPLPLLIPHPTLTHGRTQYALAKDEVNHVGEAIAFVVATDRYVAEDALARIVVDYELLPAVVGIEAARAADLLVHEDVPGNVAATTEQSNGDAPAAIAAAPHRLALDLQIERSACMPMEGRGVVARWDPDQGRLQVWSSTQTSTGVRAAVAAKLGLDLGQVDVITPDVGGGFGVKIVHPWPEELLVPLAAQRLGRAVKFTEDRREHFISSAHERAQVHHVEVGFDDDGRVLGLDVRFWHDHGAYTPYGLIVPIITSTQLLGPYKPGAYRVRFDSLYTNTVIVTPYRGAGRPQGCFVMERTMDAIAAELGMDRAEVRAANFIQPDEFPYDHGLIFQDGRELEYDSGDYPAMLEKIKELVDWDGFPAFREQQAALGKRVGLGLACYVEGTGVGPYEGAHVHIETSGKVKVATGLTTQGQGHQTAFAQIVADELGVRFEDVEITTGDTRRMPYAVGTFASRAAVMSGSAIHLAAKRTKEKALRIAADALEADVEDLEIVDGVVSVKGTESSIPLGTIAVLSNPLRYAFDEASKAATQFNVGDPDKPPVAEDDEPGLEGKDFYSPPRSTFASGMHAVIVETDVDTAEIRILKYAVVHDCGHLINPMIVEGQIHGGVAQGVGGALYERMAYDESGQLLNASFMDFLMPYVTEVPTSIEIDHLETPSPLNPLGIKGAGEAGVIPGSAAFAAAIEDAERAVSPTFGITAMPISPSELFALRAAHVPHAQEPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG40</accession>
    <name>A0A0Q8VG40_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894879.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52946">
        <property type="protein sequence ID" value="KRC52946"/>
        <property type="gene ID" value="ASE19_11110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2102105at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="77" mass="8489" checksum="7A8285BD66DA9C1C" modified="2016-01-20" version="1">MKKTTSPETQTGRHLESVGTNPADAVETDAVARAVARRAALRDRHAQNLTRLMDQRSDLRGVNSLADFVDDAVRWTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG79</accession>
    <name>A0A0Q8VG79_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_13960</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53441">
        <property type="protein sequence ID" value="KRC53441"/>
        <property type="gene ID" value="ASE19_13960"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="112"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="129"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="304" mass="31484" checksum="BE9F75EB8C5CBFD6" modified="2016-01-20" version="1">MDRRWRTPRPSTDLPHPEVRHAPQGPEMTAPHEPDSPLEPPLDAAREEAVRRTLAEAGGPETTPAEVVARLDGVLEDLVAERRTPSVSHPESAGIVIPMDAAARRRRLRVRALLGAAAAVVAVGVGAGVIQGQPGSDDKTMSAEGTAADEAPARDDTAAGLEADQSANSPAAPEVAASGGDQATPQDTLGDTSSKYALELRRVVTDGPVRAVRPDHLREDLVALQHVSVPKLASADYAIGTLSAPDDFMCGPAAYGTGYLVGVTYGGKPALVAFREPVGDNQEAEVLACGTGDVLHSTVLATTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGM9</accession>
    <name>A0A0Q8VGM9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01870</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56606">
        <property type="protein sequence ID" value="KRC56606"/>
        <property type="gene ID" value="ASE19_01870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1977738at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="213" mass="24609" checksum="F12D4CCB735E696A" modified="2016-01-20" version="1">MTSRDRLLLHLREVPELREAITASERRWGHADAFDVCETASRLAVEAYRAGEETVGQRIVTALLPALDEEGATYAPNCVTIAFLEHPAWHEAWLQPYVDRWPTPIRDELRSQQAHIRAHRDAAAKKHAEWHDLFRSAEGEPVDVVLDRLRGLVDAEGDDPHAELGLQVVARFLSDRHWLRRHPIDSIRLAWRYRSTRRPTRTLAQIRRPRFSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGP4</accession>
    <name>A0A0Q8VGP4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Sugar ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11270</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53632">
        <property type="protein sequence ID" value="KRC53632"/>
        <property type="gene ID" value="ASE19_11270"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="1"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="250"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="31"/>
            <end position="38"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="506" mass="55406" checksum="4DAA71B03A8F1FFA" modified="2016-01-20" version="1">MRDISITFGSVRALDGVSLRLLPGEVHALMGENGAGKSTLIKALTGVYTIDSGTILVGGEEHQFSTPAAAQAAGISTVYQEVNLVPNLSVAENMLLGREPRFLGGINVRAMNRRARATLERLGLDVDPRSILGDHPIAIQQLVAIARAVDVDARVVILDEPTSSLDADEVEKLFEVMRRLRDNGVAIVFVSHFLDQIYEIADRMTILRNGRLVEERMVADTTQLELVQLMIGRELEVLDRLDRAQTRVHERSTPVLQAVGLSRKGSLEATDLCLYDGEVVGVAGLLGSGRTELARLLFGADTADHGSLEIRSAKRRLRSPRHAIDRKIAFSSEDRKAEGVIADLSVADNMLLALQASRGWLRPIPQATRTQLVDEYIKALDIRPADPNALMRNLSGGNQQKVLLARWLITEPELLILDEPTRGIDIGAKAQIQAKVAELAQKGMSVVFISAELEEVLRLSDRLVVMRDRRKIDERPNDDVSVSDVLEIIAGQSAAGARTDEESARD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGW6</accession>
    <name>A0A0Q8VGW6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NADH oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12895</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the NADH:flavin oxidoreductase/NADH oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895845.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53665">
        <property type="protein sequence ID" value="KRC53665"/>
        <property type="gene ID" value="ASE19_12895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1308229at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="2">
        <location>
            <begin position="1"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="3">
        <location>
            <begin position="364"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="3">
        <location>
            <begin position="434"/>
            <end position="581"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="629" mass="64701" checksum="AAFA307EB752A789" modified="2016-01-20" version="1">MELRNRIVMSPMETMYGTPEGHPSDRTVAHFARRAEGGAGLITVGATGIDPRHPETPGGLQIGTDAAVSAHKGLVEAVHAHGARIQPQVVHAGPDGLGPEMFGVTSLGPSVIASYLTGRPSAEATKEQIGEILDLYRAAVVRVREAGYDGLELHAAHGYMFLGSFLAPQRNRRGDRYRGTSVEGRIRVVLEALTAIRAELGPDFPVTLRISGYERVAAGRPVWDTAAMAPLLVEAGVDAFHVSGGVIDRLVTGMVNAADDGDGLNVGGAAAVREVVDVPVIAVGRLHDPALAEQVLADGRADFVAMGRPLLADPDLPRKLGGWGGGATRVRRCISCENCIDTLEEKLATECAVNPLTGHDLDRVPAAPAPQRIVVVGGGPAGLETAVRASAAGHQVTVLEAGDRLGGALVDASVVHEENRSYLDWLLAEVAASAATVRLRTPADVATVRALAPDLVVVATGGRVVLPELPGADLPHVRRGIDTTAAPGPRRVVVVGGRGAAVELAETLAGEGALVALLATGAEIAPEFGSKRRTEHMDRLDRLGITVHTGCTVSAITASGVSWTPANGTPRELPADAVVLAGEVVADPAPAAALADGLPGVVVRTVGDANGLGLIRGATADAATLVASL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH77</accession>
    <name>A0A0Q8VH77_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06850</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895236.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53805">
        <property type="protein sequence ID" value="KRC53805"/>
        <property type="gene ID" value="ASE19_06850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1835746at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="109"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="131"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="242"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="255"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="281" mass="30339" checksum="C502F5E6C738C1DE" modified="2016-01-20" version="1">MDLSSLIFVALFVAWAVYLVPKALRSHEEETDSRSVDGFSDRLRVLARREAVSATAAELVTAPDDRAVEEPAAPTPAPRASTPAPSRPSRPPLQQRLAARRAAERRRRVFNLLVLMNLLVGGLGIGKVIGLVWLAAPLTLLVAWLVACRLMVRREQAARAASARRRRRTLADEVIEAEDAEVSAISPFDAITDDTDEIPAVTAEVLTEEPAADGWTPVPVPLPTYVAKAPAGRTVRTIDLDSTGVWSSGRNEADSQLAREADAQRAQAEADADVERRASGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHA1</accession>
    <name>A0A0Q8VHA1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_02235</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892685.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56667">
        <property type="protein sequence ID" value="KRC56667"/>
        <property type="gene ID" value="ASE19_02235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1859267at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="370" mass="40410" checksum="5FAA02A135D77B92" modified="2016-01-20" version="1">MTPALYECVEMSLRAERAGDFATALDWYRTVPMFAGNRHGRILEDLAGWGPDLPPWVWMRYLSYTATRCEDGDTGGLVRGTLRVMVETAHGDLLQACFERGGDPVRVGAQVMGESWAYQQTVLGVGALLAFLDEHAEGRLAEHGDLARQWAAAPMSGYQLGQSLPGARLQVREAGAVDWTEVLDLGARTGLCLGGWVLGRLVPSGVDDRLMFDMAPLPVPEQLARDVAATTGGGRWSVPLATAQLERRISSDSYLREGYEIGSDVQEIALIEHSCTAAQRSVTVQNWREGRDERRRAAFRLLRRASEGQVLPENQALVAAAALVVQADADVRRTLVRPGQPGSWRKWASLVPEPARQRLLTLADLAVAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHD3</accession>
    <name>A0A0Q8VHD3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Bile-acid 7-alpha-dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01910</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892632.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56614">
        <property type="protein sequence ID" value="KRC56614"/>
        <property type="gene ID" value="ASE19_01910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1736098at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13577">
        <property type="entry name" value="SnoaL_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="2"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="18349" checksum="C72A7BBD7A171059" modified="2016-01-20" version="1">MDLAAIEEIKRLKHRYFRTLDLKKWDEFADCLAEDVVARYGTQAMAEPLHFDNRADVASYMEKNLGLGIITIHIANHPEIDVDGDTATGSWAFEDTVIVPDFKVQIRGGGYYVDTYRRDADGAWRIASTQYERIYEAMTSLDDTPSFKLIANRWDPSLKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHE3</accession>
    <name>A0A0Q8VHE3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">4-hydroxy-tetrahydrodipicolinate reductase</fullName>
            <shortName evidence="9">HTPA reductase</shortName>
            <ecNumber evidence="9">1.17.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dapB</name>
        <name evidence="12" type="ORF">ASE19_02885</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(S)-2,3,4,5-tetrahydrodipicolinate + H2O + NAD(+) = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:35323"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16845"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:67139"/>
            <dbReference type="EC" id="1.17.1.8"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(S)-2,3,4,5-tetrahydrodipicolinate + H2O + NADP(+) = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:35331"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16845"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:67139"/>
            <dbReference type="EC" id="1.17.1.8"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="9">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 4/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the DapB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Was originally thought to be a dihydrodipicolinate reductase (DHDPR), catalyzing the conversion of dihydrodipicolinate to tetrahydrodipicolinate. However, it was shown in E.coli that the substrate of the enzymatic reaction is not dihydrodipicolinate (DHDP) but in fact (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinic acid (HTPA), the product released by the DapA-catalyzed reaction.</text>
    </comment>
    <dbReference type="EC" id="1.17.1.8" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892798.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56780">
        <property type="protein sequence ID" value="KRC56780"/>
        <property type="gene ID" value="ASE19_02885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="803114at2"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00018"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008839">
        <property type="term" value="F:4-hydroxy-tetrahydrodipicolinate reductase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016726">
        <property type="term" value="F:oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00102">
        <property type="entry name" value="DapB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022663">
        <property type="entry name" value="DapB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000846">
        <property type="entry name" value="DapB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022664">
        <property type="entry name" value="DapB_N_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023940">
        <property type="entry name" value="DHDPR_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20836">
        <property type="entry name" value="PTHR20836"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05173">
        <property type="entry name" value="DapB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01113">
        <property type="entry name" value="DapB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000161">
        <property type="entry name" value="DHPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00036">
        <property type="entry name" value="dapB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01298">
        <property type="entry name" value="DAPB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="8 9" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="7 9" id="KW-0520">NAD</keyword>
    <keyword evidence="4 9" id="KW-0521">NADP</keyword>
    <keyword evidence="6 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DapB_N" evidence="10">
        <location>
            <begin position="18"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="DapB_C" evidence="11">
        <location>
            <begin position="124"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="region of interest" description="(S)-2,3,4,5-tetrahydrodipicolinate binding" evidence="9">
        <location>
            <begin position="158"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="9">
        <location>
            <position position="148"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="9">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="23"/>
            <end position="28"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="59"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="91"/>
            <end position="93"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="118"/>
            <end position="121"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="149"/>
        </location>
        <ligand>
            <name>(S)-2,3,4,5-tetrahydrodipicolinate</name>
            <dbReference type="ChEBI" id="CHEBI:16845"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF05173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC56780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="263" mass="27348" checksum="171823E7FA8FCAA6" modified="2016-01-20" version="1">MSTRVAENAGPTDAGRLRVGVLGAQGKVGAEVVRAVEEAPDVDFSTGVDQGDPIAALVESGTQVVVDFTHPDVVMDNLRFCIENGIHAVVGTTGFDDARLATLRGWLADSPGTGVLIAPNFSIGAILMMRFSAIAAPFFESVEVVELHHPTKADAPSGTAGRTAEMIAAARREAGSAPIPDATSTGLEGARGADVDGVRVHSVRVRGLVAHQEVILGGLGETLTIRHDSLDRVSFTPGVLTGVRRIGDFPGLTVGLEHFLDLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHH8</accession>
    <name>A0A0Q8VHH8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03830</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892959.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56942">
        <property type="protein sequence ID" value="KRC56942"/>
        <property type="gene ID" value="ASE19_03830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="218"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="247" mass="26580" checksum="1F40DF16FE91E6E2" modified="2016-01-20" version="1">MAQLGGTVVWMAVRGPWDYWRDTVDQMFQILKQCWIPMAVSCTFFGLGAPGLQGGNIYALFGMPERLGSFFIMASIREFAPWVNAMVVAGVVGSAITADLGARRIREEIDAMEVLGVDPVRALVLPRIVAVTIITGLMDIIALCFGLLGGFIAAVPILGANPWAFYNSLFANLTTPDIWGSVVKTTLFGLIIGVVCCYKGMYAKGGAIGVGRAVNQAVVIAFALIWVVNVVFTNILLGLNPEIQVFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHP3</accession>
    <name>A0A0Q8VHP3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sulfurtransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03885</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892969.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56952">
        <property type="protein sequence ID" value="KRC56952"/>
        <property type="gene ID" value="ASE19_03885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2045084at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021309">
        <property type="entry name" value="DUF2892"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11127">
        <property type="entry name" value="DUF2892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="67" mass="6914" checksum="75A9A6020340B794" modified="2016-01-20" version="1">MNVDRLVLALAGTLVLASALLATVLSGWWLLLAAFVGANLLQASVTGFCPAAVVLRRFGVPAGCAFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHP6</accession>
    <name>A0A0Q8VHP6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Epimerase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07425</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895337.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53905">
        <property type="protein sequence ID" value="KRC53905"/>
        <property type="gene ID" value="ASE19_07425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1180629at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="1">
        <location>
            <begin position="10"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="364" mass="40489" checksum="0DE4EF38144A82EB" modified="2016-01-20" version="1">MNDFWYGKRVLITGGDGFVASNLADALMKKGAVVTITVRHNRPVPTADLLGHIDRPDVEVCDMDDFAQVQRVVNRHQIDTIFHLAASAIVSDAANAPMSTLHNNILPTMNLLEAARINEVPRVVIASTDKSYGDHADADDPEPLPYVETHALRGLDVYSASKACADLITQTYSFQFKVPALIVRSCNIYGSGDLNFSRLIPRTSLRMMAGKAPVINLGNADVLREYIYIDDLCDAYLFLAENMERHYAQEMPRTGRSTYGWAAYNVGAFTSGTDQPIESFSNIKSVTQVIDTIKGVLGTDLEPTTIPKPDNFIEIPDQFLDSKKLHDFGFVPKIDFTEGVRRTIDWYAKHQELLTKLGARYVLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI76</accession>
    <name>A0A0Q8VI76_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10780</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894819.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52887">
        <property type="protein sequence ID" value="KRC52887"/>
        <property type="gene ID" value="ASE19_10780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1258218at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012808">
        <property type="entry name" value="CHP02453"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015996">
        <property type="entry name" value="UCP028451"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36452">
        <property type="entry name" value="PTHR36452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09365">
        <property type="entry name" value="DUF2461"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028451">
        <property type="entry name" value="UCP028451"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02453">
        <property type="entry name" value="TIGR02453"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="210" mass="23500" checksum="0888CC3B9F1D14F0" modified="2016-01-20" version="1">MEFSGFPVAALDFYDDLEVDNTKSFWDAHKATYDNAVKAPMVALTDALAQEFGAAKVFRPYRDVRFAKDKTPYKTHQGAFVGVAAATGWYVEVAAPGVRVGGGIYEAGGERLAALREAMADDKTGKALQRILRDLEKGGFEVAGERLKTVPRGYDKEHPRIDLLRMKTVLGMRSYGFEPFVHTAELLDKVREDWRRLRPLVNWIETATTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIK7</accession>
    <name>A0A0Q8VIK7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_02320</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57023">
        <property type="protein sequence ID" value="KRC57023"/>
        <property type="gene ID" value="ASE19_02320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037187">
        <property type="entry name" value="DnaK_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000962">
        <property type="entry name" value="Znf_DskA_TraR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020458">
        <property type="entry name" value="Znf_DskA_TraR_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01258">
        <property type="entry name" value="zf-dskA_traR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109635">
        <property type="entry name" value="SSF109635"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01102">
        <property type="entry name" value="ZF_DKSA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51128">
        <property type="entry name" value="ZF_DKSA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="DksA C4-type" evidence="5">
        <location>
            <begin position="54"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="dksA C4-type" evidence="4">
        <location>
            <begin position="97"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC57023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="128" mass="14309" checksum="F32767BFCF352A9F" modified="2016-01-20" version="1">MVVLDHEEAWSKAELAEVVAELHEQRARAAEILEEQEADLTGLLRDSGDGAGQDQADLGATSFERDHELTVLNHEREKLAQIDRALARIDDGTYGVCESCGNPIGKMRLMAFPRATLCMTCKQREERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIL1</accession>
    <name>A0A0Q8VIL1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_24050</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894031.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57397">
        <property type="protein sequence ID" value="KRC57397"/>
        <property type="gene ID" value="ASE19_24050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1362697at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="404"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="472"/>
            <end position="537"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="537" mass="55004" checksum="3CBD463DE3219C86" modified="2016-01-20" version="1">MAAGELLDDVLGHLAAGTPELARAACLAAVEGAGPAALGLAALADFWLGDFAAGTRHALEGLARAEDDCTRALCLAAASLATGGDIDAAPVDGDELRGLLAAAGDPSSRWWSAVRYVASEAALVGARIRTAAAMDATGPPAGAAWQGHPFAPVMWICQARIAAFSGRIDPAQALLPSVRASVVPDSRLAPVTEAVAVLVRGNAGDADGIRIAADIAARVPDQPRDFLDRGALLLLAFGAIAVYDVRTAASLAFRAGADAALSQCTLIDRALCFEMFLNAALLEEDADAVGAWLEALTELAGHPSTAPSVRRARARVAIAAGDSETAIELLVPSIEACLADERGVEAAEGQILLGRARILAEDLGTASRELRALVADSDRAGFGAVRRAATAALASSGRRLPPIAGAGWDGLSEREAEVARAVLLGQEVEEIAAALFLAPSTVRTHVSRVLCAFGVATRIGLLAAVGATSPADPVAPPALSPRQSEVAALVAAGRTNPQIAEALGISVKGVEKHVGDVLARWHAGSRFEVARIWWSRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIQ1</accession>
    <name>A0A0Q8VIQ1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rplB</name>
        <name evidence="7" type="ORF">ASE19_06570</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 50S ribosomal subunit. Forms a bridge to the 30S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the universal ribosomal protein uL2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894494.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55091">
        <property type="protein sequence ID" value="KRC55091"/>
        <property type="gene ID" value="ASE19_06570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="961486at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01320_B">
        <property type="entry name" value="Ribosomal_L2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022666">
        <property type="entry name" value="Rbsml_prot_L2_RNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002171">
        <property type="entry name" value="Ribosomal_L2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005880">
        <property type="entry name" value="Ribosomal_L2_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022669">
        <property type="entry name" value="Ribosomal_L2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022671">
        <property type="entry name" value="Ribosomal_L2_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014726">
        <property type="entry name" value="Ribosomal_L2_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13691">
        <property type="entry name" value="PTHR13691"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00181">
        <property type="entry name" value="Ribosomal_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03947">
        <property type="entry name" value="Ribosomal_L2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002158">
        <property type="entry name" value="Ribosomal_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01383">
        <property type="entry name" value="Ribosomal_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01382">
        <property type="entry name" value="Ribosomal_L2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01171">
        <property type="entry name" value="rplB_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00467">
        <property type="entry name" value="RIBOSOMAL_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L2_C" evidence="6">
        <location>
            <begin position="125"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="26"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="223"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="251"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="278" mass="30608" checksum="86A70D19160FE0D5" modified="2016-01-20" version="1">MAIRKYKPTTPGRRGSSVADFAEITRTTPEKSLTRPLPKKGGRNNQGRITTRHHGGGHKRAYRIIDFRRYDKDGVPAKVAHIEYDPNRTARIALLHYADGEKRYIVAPKDLTQGMRVESGVGADIKPGNNLPLRNIPVGTTIHCVELRPGGGAKMARSAGNSAQLVAREGSRATLRLPSGEMRYVDVRCRATVGEVGNAEQSNINWGKAGRMRWKGKRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGKPEGRTRKRKASDSQIIRRRKSGKNKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJB9</accession>
    <name>A0A0Q8VJB9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_24055</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894032.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57398">
        <property type="protein sequence ID" value="KRC57398"/>
        <property type="gene ID" value="ASE19_24055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2037292at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="18348" checksum="51C6C3E8E0077BD2" modified="2016-01-20" version="1">MRRALITGLTLVAALAAGCGDDGESDAKGDGGTGPTTSSSDGGEPAALPKYCELLTAEQITEAVGASVTLETDPFGGCAFSQEDPRALSGTLGATELGEGAGGYETYQSGSKGAMDTSTRHDVSGLGDAAYVDIGTVAGGESLHVAGGVLSGTVISTLNLAQATSMGEDELLAISEKLLKLMADAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJL5</accession>
    <name>A0A0Q8VJL5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23655</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893960.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57754">
        <property type="protein sequence ID" value="KRC57754"/>
        <property type="gene ID" value="ASE19_23655"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="46"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="126" mass="12944" checksum="B99C7379E8F5D9AE" modified="2016-01-20" version="1">MSDNENPAPEQPAPVPPVEPPPAPEPAAGPVPTKVRWRERAFTLRSVVAVGLAGVILGAGAGVGTALVADDDHGDRPDGPGRHWPADGPGRGGFPGRPGDGFPGRQDAPGQQDQQQDQSEQQPPTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJP8</accession>
    <name>A0A0Q8VJP8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glycine--tRNA ligase</fullName>
            <ecNumber evidence="7">6.1.1.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Glycyl-tRNA synthetase</fullName>
            <shortName evidence="7">GlyRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">glyQS</name>
        <name evidence="9" type="ORF">ASE19_23570</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the attachment of glycine to tRNA(Gly).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly)</text>
            <dbReference type="Rhea" id="RHEA:16013"/>
            <dbReference type="Rhea" id="RHEA-COMP:9664"/>
            <dbReference type="Rhea" id="RHEA-COMP:9683"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78522"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.14"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.14" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57774">
        <property type="protein sequence ID" value="KRC57774"/>
        <property type="gene ID" value="ASE19_23570"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004820">
        <property type="term" value="F:glycine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006426">
        <property type="term" value="P:glycyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00774">
        <property type="entry name" value="GlyRS-like_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00253_B">
        <property type="entry name" value="Gly_tRNA_synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027031">
        <property type="entry name" value="Gly-tRNA_synthase/POLG2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022961">
        <property type="entry name" value="Gly_tRNA_ligase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033731">
        <property type="entry name" value="GlyRS-like_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002315">
        <property type="entry name" value="tRNA-synt_gly"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10745">
        <property type="entry name" value="PTHR10745"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01043">
        <property type="entry name" value="TRNASYNTHGLY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00389">
        <property type="entry name" value="glyS_dimeric"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="8">
        <location>
            <begin position="15"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="219"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="331"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="204"/>
            <end position="206"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="214"/>
            <end position="219"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="291"/>
            <end position="292"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="335"/>
            <end position="338"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC57774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="470" mass="53627" checksum="D2EB321911334651" modified="2016-01-20" version="1">MKGFPVAKPPPSTVDHVVSLAKRRGFVYPCGEIYGGTRSAWDYGPLGVELKDNIKRQWWRAMVQSRDDVVGLDSSVILPRQTWEASGHVATFNDPLTECLSCHKRFRYDHLQEQYAEKKGIENPDDVDLKDVACSNCGARGSWTEPREFSGMLKTHLGVLEDESGLHYLRPETAQGIFLNFANVVTSQRMKPPFGIAQIGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEEWHRYWIEERTRWYVDLGINPDNLRHYEHAKEKLSHYSKGTTDIEYRFNFAGSEWGELEGIANRTDFDLSTHAEHSGKDLSYFDQANNARYVPYVIEPAAGLSRSLMTFLVDAYAEDEAPNTKGGVDKRTVLRLDPRLAPVKVAVLPLSRNEDLTPKARAVATELRALWNIEFDDAGAIGKRYRRQDEIGTPYCVTIDFDTLDDQAVTVRDRDSMGQERVSLDKLKGFFAERLVGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKH0</accession>
    <name>A0A0Q8VKH0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09890</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895159.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53607">
        <property type="protein sequence ID" value="KRC53607"/>
        <property type="gene ID" value="ASE19_09890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1853589at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="145"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="182" mass="19441" checksum="AA0999B47A7D7118" modified="2016-01-20" version="1">MVERDIITHSAARRGLAVLRIGFGLTFLWAFLDKLLALGYATGANSETGAVDRFGPDAWIHGGSPTFGFLSFGVPADNPMHDFFNGIAGDAWADWMFMIGLAGIGIALTLGIGVRVTAVAGGALYLLMWLASLPLENNPVIDDHLIGAVAVVVFALTLAGDTWGLGTTWARTRLVRRFPVLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLE3</accession>
    <name>A0A0Q8VLE3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lysine transporter LysE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_06245</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894447.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55037">
        <property type="protein sequence ID" value="KRC55037"/>
        <property type="gene ID" value="ASE19_06245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1927576at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006324">
        <property type="entry name" value="LeuE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="40"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="66"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="123"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="156"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="189"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="214" mass="21778" checksum="A3CDEF6050B58B5C" modified="2016-01-20" version="1">MPSTSQLAAFAVASILFIQVPGPSLLFTIGRALTVGRRDALLSVVGNALGLVGQVVLVAVGLGAVVAASATAFTVLKLLGAGYVVYLGIQAIRHRADARTAMEAAGLTGGAAETGWVSVRTGFLVGATNPKTIVFFVAFLPQFIDDGAAAGPQLVLLGLLFGVMAVCSDACWALLASRARDWFARKPQRLDGLGAAGGVMMVGLGAALVTTNNH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLM8</accession>
    <name>A0A0Q8VLM8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_06625</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894503.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55101">
        <property type="protein sequence ID" value="KRC55101"/>
        <property type="gene ID" value="ASE19_06625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1974702at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010432">
        <property type="entry name" value="RDD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06271">
        <property type="entry name" value="RDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="64"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="120"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="RDD" evidence="6">
        <location>
            <begin position="25"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF06271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="267" mass="28173" checksum="A233136A81FBD150" modified="2016-01-20" version="1">MSDFATVTADDLVTGEGVALDLPAASLGLRLASGLLDVVITIVSFVVLYVLFAVLGISLGDEAAFGAGIVLATMLALVVVPTTVETLTRGRSVGKLAVGLRTVRDDGGAISFHHALVRSLIAVVEIYAFSGAPAFFSVLLSSKGKRLGDYAAGTYVVRDRVPLRLPPPPAMPQPLAGWAKRADLTALPTGTALAVRQFLGRLPTLDPASRERVGRALLADVLPHVAPAPPPNAPPELVLMAVVAERRERDLARLRRDDALRARLLDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ67</accession>
    <name>A0A0Q8VQ67_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">GTPase HflX</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">GTP-binding protein HflX</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hflX</name>
        <name evidence="8" type="ORF">ASE19_01025</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer. Associates with the 50S ribosomal subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="5">May associate with membranes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896704.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59637">
        <property type="protein sequence ID" value="KRC59637"/>
        <property type="gene ID" value="ASE19_01025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1592033at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01878">
        <property type="entry name" value="HflX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11060">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00900">
        <property type="entry name" value="GTPase_HflX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030394">
        <property type="entry name" value="G_HFLX_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032305">
        <property type="entry name" value="GTP-bd_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016496">
        <property type="entry name" value="GTPase_HflX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025121">
        <property type="entry name" value="GTPase_HflX_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042108">
        <property type="entry name" value="GTPase_HflX_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10229">
        <property type="entry name" value="PTHR10229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16360">
        <property type="entry name" value="GTP-bdg_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13167">
        <property type="entry name" value="GTP-bdg_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03156">
        <property type="entry name" value="GTP_HflX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51705">
        <property type="entry name" value="G_HFLX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hflx-type G" evidence="7">
        <location>
            <begin position="285"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="226"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="503" mass="54684" checksum="6874C01F13CAF71C" modified="2016-01-20" version="1">MTNHAEDFSLAAALRATEGWDDPEDLVDELEADDESADTGFVSGYADDPTTGDLDLVERHELRRVAGLRTELEDITEVEYRQLRLERVVLVGVWTEGSIADIENAMAELALLAETAGSEVLDAIYQRRQSPDPATYIGRGKVEGLREIVQATGADTVICDGELAPSQLRNLEDKVKVKVVDRTALILDIFAQHAKSKEGQAQVELAQLSYMKQRLRGWGGNLSRQAGGRVGADGGGIGGRGPGETKIETDRRRINDKIAKLRRELKVMKGTRDTKRQERRRNEIPSVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTTRRTTTSDGRVFTMSDTVGFVRHLPHQLVEAFRSTLEEVADADLIVHVVDGSHPDPEGQLTAVREVLAEIEAGDIPELVIINKVDAADPLVVDRVLRREPHAIAVSAHTGEGIDRAIAAIEADLPRPRVEFTALVPYARGDLIDRIHKDGEITTLEHTADGTQVSGRATEALAGELAAYAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ98</accession>
    <name>A0A0Q8VQ98_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Bifunctional protein GlmU</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="15">UDP-N-acetylglucosamine pyrophosphorylase</fullName>
                <ecNumber evidence="15">2.7.7.23</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="15">N-acetylglucosamine-1-phosphate uridyltransferase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="15">Glucosamine-1-phosphate N-acetyltransferase</fullName>
                <ecNumber evidence="15">2.3.1.157</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="15 18" type="primary">glmU</name>
        <name evidence="18" type="ORF">ASE19_00895</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <reference evidence="18 19" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>H(+) + N-acetyl-alpha-D-glucosamine 1-phosphate + UTP = diphosphate + UDP-N-acetyl-alpha-D-glucosamine</text>
            <dbReference type="Rhea" id="RHEA:13509"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:57776"/>
            <dbReference type="EC" id="2.7.7.23"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>acetyl-CoA + alpha-D-glucosamine 1-phosphate = CoA + H(+) + N-acetyl-alpha-D-glucosamine 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:13725"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57776"/>
            <dbReference type="ChEBI" id="CHEBI:58516"/>
            <dbReference type="EC" id="2.3.1.157"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="15">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="15">Bacterial outer membrane biogenesis; LPS lipid A biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="15">Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D-glucosamine biosynthesis; N-acetyl-alpha-D-glucosamine 1-phosphate from alpha-D-glucosamine 6-phosphate (route II): step 2/2.</text>
    </comment>
    <comment type="pathway">
        <text evidence="15">Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D-glucosamine biosynthesis; UDP-N-acetyl-alpha-D-glucosamine from N-acetyl-alpha-D-glucosamine 1-phosphate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15">Homotrimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 15">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 15">In the C-terminal section; belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 15">In the N-terminal section; belongs to the N-acetylglucosamine-1-phosphate uridyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.23" evidence="15"/>
    <dbReference type="EC" id="2.3.1.157" evidence="15"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896729.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59612">
        <property type="protein sequence ID" value="KRC59612"/>
        <property type="gene ID" value="ASE19_00895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1381953at2"/>
    <dbReference type="UniPathway" id="UPA00113">
        <property type="reaction ID" value="UER00532"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00973"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019134">
        <property type="term" value="F:glucosamine-1-phosphate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003977">
        <property type="term" value="F:UDP-N-acetylglucosamine diphosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000902">
        <property type="term" value="P:cell morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006048">
        <property type="term" value="P:UDP-N-acetylglucosamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd03353">
        <property type="entry name" value="LbH_GlmU_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01631">
        <property type="entry name" value="GlmU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005882">
        <property type="entry name" value="Bifunctional_GlmU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038009">
        <property type="entry name" value="GlmU_C_LbH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025877">
        <property type="entry name" value="MobA-like_NTP_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12804">
        <property type="entry name" value="NTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01173">
        <property type="entry name" value="glmU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13 15 18" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="10 15" id="KW-0133">Cell shape</keyword>
    <keyword evidence="14 15" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="4 15" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12 15" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="6 15" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11 15" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 15" id="KW-0677">Repeat</keyword>
    <keyword evidence="5 15 18" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transf_3" evidence="17">
        <location>
            <begin position="6"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyrophosphorylase" evidence="15">
        <location>
            <begin position="1"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="region of interest" description="UDP-GlcNAc binding" evidence="15">
        <location>
            <begin position="9"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="region of interest" description="UDP-GlcNAc binding" evidence="15">
        <location>
            <begin position="81"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="UDP-GlcNAc binding" evidence="15">
        <location>
            <begin position="106"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="region of interest" description="Linker" evidence="15">
        <location>
            <begin position="236"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="region of interest" description="N-acetyltransferase" evidence="15">
        <location>
            <begin position="257"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="region of interest" description="Acetyl-CoA binding" evidence="15">
        <location>
            <begin position="391"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="459"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="15">
        <location>
            <position position="368"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="23"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="233"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="338"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="356"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="371"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="382"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="385"/>
        </location>
        <ligand>
            <name>acetyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="410"/>
        </location>
        <ligand>
            <name>acetyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="428"/>
        </location>
        <ligand>
            <name>acetyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="KRC59612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="492" mass="50594" checksum="61F4A2D7DD5ED1B5" modified="2016-01-20" version="1">MTELTVIVLAAGGGTRMKSKTPKVLHRIGGRSMIGHVLTAVGTLEPARVVTVVGHQRELVGPHVSELRPDAVLAVQEEQLGTGHAVRIALEALDVPPREGTVLIAYGDTPLLAGETLQAFAASHRAAGAAVSILSGIVANPHGYGRIVRDEAGVVQAIVEEKDASEEERAIREINSGILAFDAAFLLEAIGRIGNDNAKGEYYLTDAIGLARADDLTVAAHAVDDALQTEGANDRVQLAELGRELNRRIVTRWMQAGVTVMDPATTWIDADVVLAQDVTILPGTQLLGATVVAEDAVIGPDTTLEDCEIGAGARVVRTHGQLAVIGASATVGPFAYLRPGTELGAKGKIGTFVETKNAKIADGAKVPHLSYVGDAEIGEGTNIGAGTIFANYDGVNKHRTVVGKHARTGSNNTFVAPVTIGDGASTGGGTVVRRDVPAGALAVSGGPQRNLAGWVASRRAGTAQAEAAGAVPGEQSENGQGLGGDPGEQAES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQH2</accession>
    <name>A0A0Q8VQH2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_01235</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896663.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59678">
        <property type="protein sequence ID" value="KRC59678"/>
        <property type="gene ID" value="ASE19_01235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="416257at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046873">
        <property type="term" value="F:metal ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001046">
        <property type="entry name" value="NRAMP_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11706">
        <property type="entry name" value="PTHR11706"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01566">
        <property type="entry name" value="Nramp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="38"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="81"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="112"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="141"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="178"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="222"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="257"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="314"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="345"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="383"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="408" mass="42823" checksum="77EF68B0C37D1456" modified="2016-01-20" version="1">MKRYLNVLLGVLTAIGGFVDIGDLVTNAQVGARFGLSLVWVVVIGVIGICVFAEMSGRIAAVSHRATFDLVRERLGPRMGFVNLVGSMLVTLLTFIAEIGGVALALQLVTSVNHVLVVPFVAAAVWIVLWRAKFSSIENVLGLLGLTLIGFAVALWQLGPDWGELAASLGEKPAQESWATYAFFGVALFGAAMTPYEVFFFSSGGVEERWTRKDIGVMRANVFIGFPLGGLLSVAIAGCAAVVLMPQGIAVETLGQVALPVAVALGKVGLAIIVLGFFAATFGAACETGLSTGYSLAQYFGFQWGKYVRPDEAAGFHVILLVATVLAAGVLLTGVDPIMVTEISVVFSAVALPLTYFPILVVANDPDYLGEHRNGRVANLLGVGYLVVITLSAIAAIPLMIVTSMGQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQM3</accession>
    <name>A0A0Q8VQM3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00325</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896907.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59797">
        <property type="protein sequence ID" value="KRC59797"/>
        <property type="gene ID" value="ASE19_00325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1390922at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13673">
        <property type="entry name" value="Acetyltransf_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="15926" checksum="AEBD0457DB80A8AB" modified="2016-01-20" version="1">MVRPAVAADVEEVCGLEAVSFPLDPWSPVLVGQAVEGSVPTLAVLVAEQEAAFAGYAVVSVVDVDAELQRIAVPEPLRRTGVAKELLAAVRVHAADGGAERLLLEVREDNLAARMFYERAGFTELGRRPRYYRDGATALVLATPVTMVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQQ8</accession>
    <name>A0A0Q8VQQ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02450</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892722.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56704">
        <property type="protein sequence ID" value="KRC56704"/>
        <property type="gene ID" value="ASE19_02450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1877173at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="110"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="152" mass="16510" checksum="19CFFE1A99035C76" modified="2016-01-20" version="1">MTKRPPAVDVACWLLWFLVAAGLAVCVMVVVQRDDLGAVWSPMQVGDSTVQPVEFVPVILVLYGVTALLAMTLIALFRTGYNWARHALAAVVVGVFLVTVATVRTDPPRLVEWAAIAGAVICAVTLVFIWHPQSRQFVREAARAAHEPHPEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQX3</accession>
    <name>A0A0Q8VQX3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PKS_ER domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56845">
        <property type="protein sequence ID" value="KRC56845"/>
        <property type="gene ID" value="ASE19_03285"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="9"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="310" mass="31030" checksum="3F3C60C1A85B381E" modified="2016-01-20" version="1">MRYTGVGPAAEVTELVELAEPAPAADEVLVRVGAVGLNPVDVKIRAAGVDFGPIEYTELPGWDVAGEVVAVGDAVTGFAPGDAVFGLARFPQAAHTLAELAVVPASDLALAPSTWSVAQQGAAPLAVLTAWHAFAAAGLTGDATGRRVLVLGGAGGVGHLAVQVAKARGAHVVATASPAKREVLLGLGADEVVDYRDEAALAAIGPVDVVLSTVDAGVPPLGAVREGTAVITITGFPDGAEDALRAAGAKQVERIMVAADGPALAEVAALADAGRLTVLVDTELPLADVVKLQERLETGRATGKVVVTLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR56</accession>
    <name>A0A0Q8VR56_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_03490</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56880">
        <property type="protein sequence ID" value="KRC56880"/>
        <property type="gene ID" value="ASE19_03490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="737210at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015919">
        <property type="entry name" value="Cadherin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017868">
        <property type="entry name" value="Filamin/ABP280_repeat-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006626">
        <property type="entry name" value="PbH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022409">
        <property type="entry name" value="PKD/Chitinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003368">
        <property type="entry name" value="POMP_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00710">
        <property type="entry name" value="PbH1"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="SMART" id="SM00089">
        <property type="entry name" value="PKD"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49313">
        <property type="entry name" value="SSF49313"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01376">
        <property type="entry name" value="POMP_repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50194">
        <property type="entry name" value="FILAMIN_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360289" evidence="5">
        <location>
            <begin position="25"/>
            <end position="1268"/>
        </location>
    </feature>
    <feature type="domain" description="PKD" evidence="6">
        <location>
            <begin position="733"/>
            <end position="812"/>
        </location>
    </feature>
    <feature type="domain" description="PKD" evidence="6">
        <location>
            <begin position="866"/>
            <end position="988"/>
        </location>
    </feature>
    <feature type="domain" description="PKD" evidence="6">
        <location>
            <begin position="1004"/>
            <end position="1076"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="742"/>
            <end position="781"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="818"/>
            <end position="877"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="840"/>
            <end position="877"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1268" mass="121863" checksum="64694B802A30846E" modified="2016-01-20" version="1">MLAAAALAFSTSLGSVLAASPARAAGPWYIANGGNNGASCLSAATPCATIAGVLAKPAFVAGDTISVAQGTYADRPLVNKAVKIIGAGTGATFVGSASTSVGWAMAVQATGNVELQNLTLTGGNYQTGGALPIFGGAVRATDVRIVDSRSSAGGAVILWPAAGVSLTMTRGEISGNRATATAANLGWGGGVYVGAGTTLTLDGTNVHDNVADGNGKAYGLGGAIVNLGTTIVRNTTFRDNDAVGPGGTSIGGAVYHNGAGLTLDNDDFVSNSAGVGGALATNQPATVTNLDFDGNTALAAGAIYPGASFSLTGGLITGNTATSNFGGAVYAAATATAPTTLTLAEVEMTGNSAPTNGGAVSTTANVTTTIRASKIAGNSSQTGAGISNAGALTLRDSELTGNAASYQGGGLTNGSTVAADTPTATVIDTLVSHNSAGFLGGGLQNLTKGTLSVTGGHVDDNSAVAGGGVILGDASTATITRASVSGNTATSLGGGGIFSSGNLTLDRATLDGNRALGNSGLGGAVYSGSNTANSSVSLQVGASTLSNNQGYGGSAVLVYSNASGATNTASIDRSTITGNTSVSQYGAIEQVGRPVTITSSTITNNTAAAGGAGALVAVAPAGGGISNTVLAGNGPVACIGAVVNNGGNHAGPGNTGCGVAASTDPQLGALAANGGPTRTQLPSASSPLLDRLTCGAGTDQRGTTRPQGARCDVGAVEREQVAPTVSGPDHVDLTVASPADPAATVTTTGSPQPTLAATGVPAGLTFTDNGDGTGKLTGTPAVGTGGVHTVTVTATNEAGSATKDIEVEVAEAPKLSGPTASTYTVGQPGGPDVFEQTGGHPVASVSTSSTLPDGVDLTDNGDGTGTLSGTPAPTTGGQYAITVKGSNGTGPDATWPFALTVNEAPSIDAPATATATVGTPGSIDLEVGGFPAPTVSASGLPAGLSVQGAHVTGAPADGTGGVHHVTFTAANGVGDDATDTTTLTVNEAASVAGPAAVRFVSGRNGEFTYAADGFPVAALSVTGSLPAGVTFADNGDGTATLSGTPATVGDHTVTVRADNGIGTAATLEVHIEVAPPVTITTTTLADAAVGTAYDVPLAITGGEAPYTFSLAAGSLPAGLQLTADGRITGTPTGSPATATFTVKVTDGGSPLSSDTQELTLTVGKGATTLLGGPVVVVGNVLLGDLTAVLTGGYPGGPVAGATVTFRVTNQVLGDPVLCTAVTDANGLARCKPTLAGITLILLAPSVKMSYAGSAQWQPSATVVAKKLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSH8</accession>
    <name>A0A0Q8VSH8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04205</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57010">
        <property type="protein sequence ID" value="KRC57010"/>
        <property type="gene ID" value="ASE19_04205"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="279" mass="30950" checksum="02352FDCB55FD35C" modified="2016-01-20" version="1">MLVNSWLTQHIRLFDLGRGDIYWFDENVYTSDDRNLADMELSRDGRYGAAVRDDDEHSRIIWYSVTGNVRDGGRPPFPTPLCQTNEASGFKSPTLAPDGSALAWEEPDGIWVKHDLDDCSGGLALLIRGGSHPSWSPATLRTSRPSYHFSLVAKPKISGTARTGRTLTVSTGTWTPVPASYSYRWYRDGKPIAKAAKRMYKITSKDRKHTITAKVTARRSGVPAKTATAASVRIXPIHPGSAPPCCLKCRPSPAPASRCTMNVNDSRDRLLSRRRRLAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VT81</accession>
    <name>A0A0Q8VT81_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">2-isopropylmalate synthase</fullName>
            <ecNumber evidence="3">2.3.3.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Alpha-IPM synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Alpha-isopropylmalate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">leuA</name>
        <name evidence="5" type="ORF">ASE19_23510</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>3-methyl-2-oxobutanoate + acetyl-CoA + H2O = (2S)-2-isopropylmalate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21524"/>
            <dbReference type="ChEBI" id="CHEBI:1178"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.3.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.13" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893935.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57729">
        <property type="protein sequence ID" value="KRC57729"/>
        <property type="gene ID" value="ASE19_23510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="840579at2"/>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00070"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003852">
        <property type="term" value="F:2-isopropylmalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07942">
        <property type="entry name" value="DRE_TIM_LeuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00572">
        <property type="entry name" value="LeuA_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013709">
        <property type="entry name" value="2-isopropylmalate_synth_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002034">
        <property type="entry name" value="AIPM/Hcit_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005668">
        <property type="entry name" value="IPM_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036230">
        <property type="entry name" value="LeuA_allosteric_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039371">
        <property type="entry name" value="LeuA_N_DRE-TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08502">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00917">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110921">
        <property type="entry name" value="SSF110921"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00970">
        <property type="entry name" value="leuA_yeast"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00815">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00816">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 3" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0432">Leucine biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="4">
        <location>
            <begin position="43"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC57729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="585" mass="64703" checksum="4F2580E2C646C983" modified="2016-01-20" version="1">MNNQRVTIPAQTASGMPYHRYTAFEPVTVPDRTWPDQKITHAPRWLSTDLRDGNQALIDPMSPSRKMKMFELLVKMGYKEIEVGFPAASQTDFDFVRQLVEEDRIPDDVRVSVLTQAREDLIARTVESLKGADKATVHLYNATAPLFQRVVFGVTEAECIAIATRGTEWVMKYAEQLLAGTDFGYQYSPEIFTQTPTDFALEVCERVSDVWQPEEGREIILNLPATVEMSTPNTYADQIEYFGRNLSRRAHSIISLHPHNDRGTAVAATELALMAGADRVEGCLFGHGERTGNVDLVTLGMNLFSQGIDPQVDFSEIDEIRRTVEYCTQLPVHPRHPWAGDLVYTAFSGSHQDAIKKGLEDLDRIAAEQGKPVGEVPWEAPYLPIDPKDVGRTYEAVIRVNSQSGKGGVAYVLKAEHSLDLPRRAQIEFSRVIQQHTDSQGGEVTPEAIWAIFRKEYLDREEPYSLVAFSSTTDQSGDDRQEVQLRVRGEEQTFTGMGNGPVAAFVDGMRQAGADIRVLDYAEHALSSGGDALAAAYVECEIAGEIVWGIGIHHNIVTASLRAVVCAANRARTTTIPAVPIAPVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VV63</accession>
    <name>A0A0Q8VV63_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type IV pili twitching motility protein PilT</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03945</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57063">
        <property type="protein sequence ID" value="KRC57063"/>
        <property type="gene ID" value="ASE19_03945"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006321">
        <property type="entry name" value="PilT/PilU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01420">
        <property type="entry name" value="pilT_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00662">
        <property type="entry name" value="T2SP_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="2">
        <location>
            <begin position="199"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="362" mass="39738" checksum="B5218B649BB58F80" modified="2016-01-20" version="1">MHRIGDRIDQLLAALWEVKGTDLMLTVGLPPMLRVDGTLMPVPGQSALTADQTDGLLAEVLSPEQHAVWGTQHEYDFSFSWREHARIRGNAFTQRGLTAVALRMIPRSVPTVDDLGLPPALRELSMRHQGLILMTGPTGSGKSTTLASLIDQINTNRGCHIITVEDPIEYVHDHKMAAVNQREVGTDTATFHDALRSVLREDPDVLLVGEMRDLESIQFALTVAETGHLVFATLHTNDTAQSLGRMIDVFPAEQQAQIRVQLAAALSCVVYQRLIPKIGGGMTAAYEVLVATPAVRNLIKEGKTHQLRNSLVTGAQDGMITLEQSLSHLIQTGIVDEEEARARSLYPKDIETRPRYSAPVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VV86</accession>
    <name>A0A0Q8VV86_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SnoaL-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01810</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896560.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59779">
        <property type="protein sequence ID" value="KRC59779"/>
        <property type="gene ID" value="ASE19_01810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1644255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12680">
        <property type="entry name" value="SnoaL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="9"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="135" mass="14303" checksum="616EAC44715EF61F" modified="2016-01-20" version="1">MSAQPREVVAAFYEAAAGRDAAALDALLEESFHEDAAVHWPEGLPYGGRVEGKAVLRKVFAGLATPNPGMGPDGLAVTSILDGGDQVAAQVTFDFLANGSSIPSGALELWTFEDGLVKECRAYYWDTAACQDLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVV1</accession>
    <name>A0A0Q8VVV1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chemotaxis protein CheW</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01305</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896652.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59689">
        <property type="protein sequence ID" value="KRC59689"/>
        <property type="gene ID" value="ASE19_01305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1711729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039315">
        <property type="entry name" value="CheW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036061">
        <property type="entry name" value="CheW-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002545">
        <property type="entry name" value="CheW-lke_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22617">
        <property type="entry name" value="PTHR22617"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01584">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00260">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50341">
        <property type="entry name" value="SSF50341"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50851">
        <property type="entry name" value="CHEW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CheW-like" evidence="1">
        <location>
            <begin position="10"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="158" mass="17045" checksum="4EB5D14D0C1F2ACC" modified="2016-01-20" version="1">MSVTSLTRTAEQYCTFWVADLFFGVSVDEVQEVLRHQPMTPVPRADEAVTGLINLRGQIVTAVDLRMRLGLPARTDEKVPMNVIVRTRGEVVSLLVDDIGDVIDTAGVDAQPVPSNMPKGVQDVIRGVRPLPDAILLVLDADRAVDVSTTPDTTGGNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VX91</accession>
    <name>A0A0Q8VX91_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Sulfurtransferase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_22730</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>hydrogen cyanide + thiosulfate = 2 H(+) + sulfite + thiocyanate</text>
            <dbReference type="Rhea" id="RHEA:16881"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17359"/>
            <dbReference type="ChEBI" id="CHEBI:18022"/>
            <dbReference type="ChEBI" id="CHEBI:18407"/>
            <dbReference type="ChEBI" id="CHEBI:33542"/>
            <dbReference type="EC" id="2.8.1.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892601.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58882">
        <property type="protein sequence ID" value="KRC58882"/>
        <property type="gene ID" value="ASE19_22730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="920668at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004792">
        <property type="term" value="F:thiosulfate sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001307">
        <property type="entry name" value="Thiosulphate_STrfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045078">
        <property type="entry name" value="TST/MPST-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11364">
        <property type="entry name" value="PTHR11364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00380">
        <property type="entry name" value="RHODANESE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00683">
        <property type="entry name" value="RHODANESE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Rhodanese" evidence="4">
        <location>
            <begin position="14"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="4">
        <location>
            <begin position="156"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC58882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="269" mass="28022" checksum="A0B50896F411682B" modified="2016-01-20" version="1">MASPLISVDELATRSGEVTILDVRYRMGGRGGPGEFAAGHVPGASYVDLDSALAAAPGPRGRHPLPEQGVFEAAMRAAGVSDDRPIVVYDDWSAHAAARCWWLLRFHGHRDVRVLDGGWAAWQAAGLPVQQGEPDAATGDFTARPGAMPAVDVGTVAAAGVLIDARAAERYRGEVEPIDPVAGHVPGAVNVPTSRNLGEDGRFRSPEELAQVYAEVGAVDGADVAVYCGSGVTAAHGVLALELAGVRAALYPGSWSEWVADSSRPVERS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN52</accession>
    <name>A0A0Q8UN52_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21605</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896196.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46426">
        <property type="protein sequence ID" value="KRC46426"/>
        <property type="gene ID" value="ASE19_21605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="129736at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025093">
        <property type="entry name" value="DUF4020"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039444">
        <property type="entry name" value="SIR2-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13212">
        <property type="entry name" value="DUF4020"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13289">
        <property type="entry name" value="SIR2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SIR2_2" evidence="2">
        <location>
            <begin position="111"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4020" evidence="1">
        <location>
            <begin position="1003"/>
            <end position="1141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1172" mass="130345" checksum="532D7AE8D9EA0F88" modified="2016-01-20" version="1">MRFQRVEIPDDLVTAARDGRMVIFVGAGASLDPPSRLPDFSQLVIDIGTQVGSAPTTLQLARPDVFLGDLTDLEVEVHSLVAKAIDLPGSEPNRLHHAIMRLAAVHQPVRVVTTNYDRHLETAARIGSLEVEIFRSPALPLGDDFAGIVHLHGALEQNPQHLILTDGDFGRAYLREAWAARFLERMFSAFSVLFIGYSHGDVVMQYLARSLGREGRRYVLTSDSNKADWARLGLTAISYPVADKSHVALVEALERWAELSAWGRLDHRRRITELVGLEPSSLPEETSYLKQVLADPERVRFFTEAASSPSWLQWTATRPEFEHLFTAPPKTDSAGQAIARSLTRWFIDNFACVEEHSPAALRLVRDRPWTLELWETLVHRLFAQPTPIADWQVPWLLSALHRSPQGRHDLLDMMLAEKEWQSRPLLALTLLEHRTEAIMRSGLDFGANDDAPRFEVTLTGDEHWLSEAWKKVFTPMLADHARELFDLVVRQIRASYRLNDLLQSGFDPMGFGRSAIEAHPQDDFREPHDMLIDAARDCLERILDICPGQASRDLDLLIGAPETILRRLAVHGWRVKSDTSADAKVGWVLSQGLLYDVSLQHEVYLLLKDVLPDTSSDVRVKLLAAADAGPTPTAGDSSSYPRYNLIVWLHKTLPDDPLITSAFESVQEEHPDYAPREHPDLNMVMTSGFVEDAEPFSQEELHALIADEPGTALARLREFSEADEFKLTGPTWTGALAALRSCVTQYPLDGMLLAPHLQPNDDDIRGALIRGWSAADLSAHADGTLPDQVISVIGSWELAPVRSPAANLLASGGRADHPTRWHDFASARDLARRLWPEDDLAGNVTGGGTYLEAINHPAGDLAEFWSKVTAAQWASQGDMWAGLPPLITAELDRMISQTGRNGLLARCVLITKLRLYFGAAPEWAAAELLPLLAWEAEDTGQVATMWRTFLDHGQYDAALLRAGLLESMLATLDHDADVDDERSMKSLGRQLATVAVRFDDPPTPWLSQLATKASSKVRLAWTRSVGRHLRDMNAEEAHAQWARWIGAYWHDRVASVPRPFGYDEASAIAGWVLHLPLVRDEAVGLVEAVPSGLERDDRILAVMTELDLTAEAPLWARYLTHLLHGTPVDEPWAICHYLAEIVPALRNGSSDLLVAPVIDQALRFGCSSAHNW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNE8</accession>
    <name>A0A0Q8UNE8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Succinate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_22195</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896294.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46526">
        <property type="protein sequence ID" value="KRC46526"/>
        <property type="gene ID" value="ASE19_22195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="750409at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011138">
        <property type="entry name" value="Cytochrome_b-558"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034804">
        <property type="entry name" value="SQR/QFR_C/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000701">
        <property type="entry name" value="SuccDH_FuR_B_TM-su"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01127">
        <property type="entry name" value="Sdh_cyt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81343">
        <property type="entry name" value="SSF81343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02046">
        <property type="entry name" value="sdhC_b558_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0349">Heme</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="76"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="122"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="169"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="211"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="238" mass="25891" checksum="A510B71202B65760" modified="2016-01-20" version="1">MATTTRPELVKGSRAARTTIALKILMAVSGLLFIGFVLGHMYGNLKAFAGEESFNEYAHHLRELGTPMLPYEGFLWIMRVGLIAAVIVHIACAVALWSRAAKARPVKYAVKKNRGSSISSRTMRWGGLTLLLFIVWHLLNFTIVKINPSNGDTGGENPYALVVDTFDTWWMTIIYLVAMVALGLHLHHGTFSSLQTLGLTNSATSRARARAAGWVVAIVVAGGFSLVPLSVLVGIIEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNK9</accession>
    <name>A0A0Q8UNK9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Pribosyltran domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21370</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896154.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46383">
        <property type="protein sequence ID" value="KRC46383"/>
        <property type="gene ID" value="ASE19_21370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1937725at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pribosyltran" evidence="1">
        <location>
            <begin position="170"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="240" mass="24508" checksum="073EF6EE65D73337" modified="2016-01-20" version="1">MPLLQDLAEGFGDLVLGSACVGCERPGRALCGGCLAGLPAEGAVHWPSPPPAGLVPPYSLGAYDGVLRALVLAHKERRVLALARPLGALLARSLTAALADVPVAGAVVLVPVPSRPGAVRQRGHDPTLAMVRAAAVRVPGEREVAVARLLRVRPGVVDQAGLDAAARARNLGGSMALSGTAVRRLARRLPRARLVVCDDVLTTGATLREAQRALESAGLPVLAAATVAATARKGRGPNFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UP73</accession>
    <name>A0A0Q8UP73_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20820</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896392.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46623">
        <property type="protein sequence ID" value="KRC46623"/>
        <property type="gene ID" value="ASE19_20820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1945155at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="136" mass="14914" checksum="C53B8E6C3B796852" modified="2016-01-20" version="1">MRKTGPMRFTEHELTAALTGTAKALLASDRKQRRKGVDVETAWAEMDRYQRFVMLDALGEQVLPVLVALPDAPVEPGTRPSYDDQVVADVVSGLVGEDRGRVRRAVEVKARTALVQVALAHVPPRLDPDALLTDES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8URT0</accession>
    <name>A0A0Q8URT0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amidohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21420</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896163.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46393">
        <property type="protein sequence ID" value="KRC46393"/>
        <property type="gene ID" value="ASE19_21420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1832218at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032465">
        <property type="entry name" value="ACMSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21240">
        <property type="entry name" value="PTHR21240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04909">
        <property type="entry name" value="Amidohydro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="2">
        <location>
            <begin position="20"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="32772" checksum="E4117DE32BF8B63A" modified="2016-01-20" version="1">MTEGQEVRAFWQQLGLSGLIDLHVHFLPPPIERAVWAVFDSAGPKIGRPWPIRYRDTIEERVAQLRDFGVRRFPTHPYAHKPGVASYLNEWSRTFAETVPEVVRSATFYPEPEAAGYVPELIGDGVQIFKIHLQVGEFVADDPVLDPVWGVLEDAGTPVTVHAGSGPVGNAFTGPDSVARLLRRHPRLCLLVAHMGAPEYEDFLVLAERYDNVHLDTTMVFTDFFDQDAAYPAALVPRLKDLQPKVLLGSDFPTIPYPYQRQLEGLARLDLGDDWLRDVCWHNAVRLLARD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUB1</accession>
    <name>A0A0Q8UUB1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Glutamine synthetase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_17760</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the glutamine synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893176.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48774">
        <property type="protein sequence ID" value="KRC48774"/>
        <property type="gene ID" value="ASE19_17760"/>
    </dbReference>
    <dbReference type="OrthoDB" id="416474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004356">
        <property type="term" value="F:glutamate-ammonia ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006542">
        <property type="term" value="P:glutamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008147">
        <property type="entry name" value="Gln_synt_b-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036651">
        <property type="entry name" value="Gln_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008146">
        <property type="entry name" value="Gln_synth_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027303">
        <property type="entry name" value="Gln_synth_gly_rich_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00120">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03951">
        <property type="entry name" value="Gln-synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01230">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54368">
        <property type="entry name" value="SSF54368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00181">
        <property type="entry name" value="GLNA_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gln-synt_C" evidence="4">
        <location>
            <begin position="105"/>
            <end position="356"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM01230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="446" mass="50135" checksum="AEEC6B9B519B890B" modified="2016-01-20" version="1">MGKQEDFVLRALEERDVRFVRLWFTDVLGFLKSVAVAPAELEGAFSEGIGFDGSAIEGFARVYEADMLALPDPTTFQILPWRSSEGPATARMFCDIVMPDGSASYADPRNVLKRTLGKAAEQGFTFYTHPEVEFYLFKDEPQPGQEPVPMDRSGYFDHAAHSHGSDFRREAITMLEAMGISVEFSHHEAGPGQQEIDLRYADALTTADNIMTFRTVIREVALSQGLWATFMPKPFTTHPGSGMHTHVSLFEGDQNAFYEAGSEYQLSKTGRQFIAGVLKHASEISVVTNQWVNSYKRLMFGGEAPSYICWGHNNRSAMIRVPMYKPSKGQSTRIELRTIDSSCNPYLAYAAVLAAGLKGIENGYELPREAEDDVWALSERERHSLGIEPLPKSLHEAIVVAERSELLAETLGEQVFEFFLRNKRAEWDEYRGQVSVFERDRMLPVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUF0</accession>
    <name>A0A0Q8UUF0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18000</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893215.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48814">
        <property type="protein sequence ID" value="KRC48814"/>
        <property type="gene ID" value="ASE19_18000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1006830at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032095">
        <property type="entry name" value="Sacchrp_dh-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005097">
        <property type="entry name" value="Sacchrp_dh_NADP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16653">
        <property type="entry name" value="Sacchrp_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03435">
        <property type="entry name" value="Sacchrp_dh_NADP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sacchrp_dh_NADP" evidence="1">
        <location>
            <begin position="3"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="Sacchrp_dh_C" evidence="2">
        <location>
            <begin position="142"/>
            <end position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="408" mass="44191" checksum="522FCFF28F1CBB26" modified="2016-01-20" version="1">MRILLVGAGGVGGAFAAIAARRDFFEAIVVADFDLARAERAAATDPRFTAARVDASSAESVTALCRTHRISHVMNAVDPVFDMPVFNGAFAAGADYLDMAMSLSRPHPEAPYERTGVKLGDEQFEVAGAWEQAGRLALVGIGVEPGLSDVFARYAADHLFSEIDELGTRDGANLVVTDDDGNEVFAPSFSMWTTIEECLNPPVVWEKTVSNPGGGWFTTPPFSEPEVFDFPEGIGPVECVNVEHEEVLLMPRWIDCRRATFKYGLGAEFITILKVLHTLGLDRTEKVTVKGVEVSPRDVVAAVLPDPATIGPRMTGKTCAGLWVTGTGKDGAPRSTYLYHVVDNEWSMREYGHQCVVWQTAVNPVVALELLATDVWQGAGVLGPEAFDAVPFLDLLTEYGAPWGQREQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUI1</accession>
    <name>A0A0Q8UUI1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enamine deaminase RidA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18075</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893228.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48827">
        <property type="protein sequence ID" value="KRC48827"/>
        <property type="gene ID" value="ASE19_18075"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1850770at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035959">
        <property type="entry name" value="RutC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006175">
        <property type="entry name" value="YjgF/YER057c/UK114"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11803">
        <property type="entry name" value="PTHR11803"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01042">
        <property type="entry name" value="Ribonuc_L-PSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55298">
        <property type="entry name" value="SSF55298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="16323" checksum="6DF7D280FFE53459" modified="2016-01-20" version="1">MSIVVGGHTRIRPFNTSVTYPEQNLDNDLCQAVVAGNTVYVRGQIGQDLDTSESVGIGDVEAQTEQAMGNIKMLLEEAGARMEHLVKLTIYIVDPRYREAVYRTIGRWTKGVHPISTGIVVSALARPEWLVEVDAIAVIPDDDAAEDTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV11</accession>
    <name>A0A0Q8UV11_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">30S ribosomal protein S13</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19350</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893447.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49045">
        <property type="protein sequence ID" value="KRC49045"/>
        <property type="gene ID" value="ASE19_19350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1950120at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010979">
        <property type="entry name" value="Ribosomal_S13-like_H2TH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46946">
        <property type="entry name" value="SSF46946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="104" mass="11385" checksum="13CA30906583C331" modified="2016-01-20" version="1">MALPPLTPEQRQAALEKAAAARRERAEVKNRLKNSGASISEVLQQGQVNDVIGKMKVLDLLQSVPGLGKVRARQVMERLGIAESRRVRGLGTKQVAALEREFAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV55</accession>
    <name>A0A0Q8UV55_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17970</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893832.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49102">
        <property type="protein sequence ID" value="KRC49102"/>
        <property type="gene ID" value="ASE19_17970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1911826at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021831">
        <property type="entry name" value="ParD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11903">
        <property type="entry name" value="ParD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="116" mass="12509" checksum="99B31F14B9D37EE6" modified="2016-01-20" version="1">MATMPTRIDDQLFEAARVAGVAMSRSAAQQLSHWARLGRELESARGVSQDEIARVLGGQRAYDALADPEQAVVRAAWDERVESALAELDLAAEFRAAGDTWSEIDADGNVVALPVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV66</accession>
    <name>A0A0Q8UV66_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893398.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48996">
        <property type="protein sequence ID" value="KRC48996"/>
        <property type="gene ID" value="ASE19_19065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="18223at85015"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359457" evidence="1">
        <location>
            <begin position="35"/>
            <end position="464"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="464" mass="46265" checksum="6D75ACA3563940EE" modified="2016-01-20" version="1">MTGARHRRPRPRGRWFAAVAFVSLLGLVAGTSGTLSGWTGATVTNATGTAAVGRLAVTHTYGAGSCAGGPRTAAVTCTGSLAPVAGAPASTNDTIANDSDRALTQSLTAASCAPVRLLNTQQAADPMLPRQAVAFQQPDPWGTTSAATFSGAGYATDIVGTNGSGLLGLLSNNYSLGVWFNAADAQGGGLLSLSGSLSNGAGVANPALWLDTAGKVRVAVSSTLGTSQLASASSYSSGWHHAVVTVSKAVLGVTMTVTLYVDGGSVASTTVLALLTGTSGYWHLGWSDFTGLTAPTSSSFHGRLTGAFVNQSSALSAGTVSSLFAAGSATSYRTTVAGLSGTASVWMLGDDGLTTYAGTLPGAMADPCGQVNVTLTFAAPAATFGPMTLNALALPASNPRTVAAPAAGQSQTLAVSTTRGASYSTEITGLRLLVPLTFGYGTSPATSWTMTMQWGGDPAAVFVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UWF0</accession>
    <name>A0A0Q8UWF0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycerol acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20255</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46608">
        <property type="protein sequence ID" value="KRC46608"/>
        <property type="gene ID" value="ASE19_20255"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PlsC" evidence="1">
        <location>
            <begin position="40"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="244" mass="26943" checksum="4F18DA5110CAEEEF" modified="2016-01-20" version="1">MREKRGWAFNIAVPILKPLLKATTKREWIGGENIPEEGGFIIALNHISHVDPLTAAHLVYDHGYMPRYLAKAGLFDGKVLGHFLRGAGQIPVKRETKDAVGAYAAAVDAVRDGQCVVIYPEATITRDPGMWPMKGKSGAARIALETGCPVIPVGQWGAQEMLAPYTKNPHLVPRHRITMRVGPPVELDDLRAQERTAAVVNEATERIMTAITHQLELVRGEQAPAERYDMAVQGDRFKKQKKAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXM5</accession>
    <name>A0A0Q8UXM5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NADH dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_15595</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NADH dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893512.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50043">
        <property type="protein sequence ID" value="KRC50043"/>
        <property type="gene ID" value="ASE19_15595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="403436at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003954">
        <property type="term" value="F:NADH dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006116">
        <property type="term" value="P:NADH oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045024">
        <property type="entry name" value="NDH-2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43706">
        <property type="entry name" value="PTHR43706"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="373"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="3">
        <location>
            <begin position="6"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="477" mass="51335" checksum="5677B5D50AB8BC86" modified="2016-01-20" version="1">MGSRHHVVVVGSGFGGLFATKALRRADVDVTLISKTTHHLFQPLLYQVATGILAQGEIAPPTREVLARQANARVVLGEVNALDLGARTITSDIQGRVHQLSYDSLIVAAGAGQSYFGNDHFADFAPGMKTIDDALELRGRIFGAFELAELAETKEELERYLTFVVVGAGPTGVEMAGQIAELAHKTLRRDFRSFDPRQARVVMVDAAPQVLPPFGAKLGAVAQRSLEKRGVEVLLGGIVTTVDQLGIELQHKDGTTTRIEAATKVWAAGVQASPLGRLLAEQTGAQLDRAGRVAVNPDLTLPGYPEVFVVGDMMALDNLPGVAQVAIQGGKYAAKTITQRVEQKAPPGPFTYFDKGSMATISRFSAVALVGRLRLTGLVAWLMWLVIHLLYLTGFKNRFTALLHWLVTFVSNSRSERTATAQQIYARLAIGRLEGGTASVASSPSHWNELRVELEARAAEEARLTDSGERGARVEAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY04</accession>
    <name>A0A0Q8UY04_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16195</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the sbp family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893617.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50149">
        <property type="protein sequence ID" value="KRC50149"/>
        <property type="gene ID" value="ASE19_16195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1930757at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009709">
        <property type="entry name" value="DUF1290"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06947">
        <property type="entry name" value="DUF1290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018579">
        <property type="entry name" value="Sbp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1 2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="27"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="56"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="80"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR018579"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="110" mass="11533" checksum="452EAA55242B7BC4" modified="2016-01-20" version="1">MIAVLGLLVGIGLGLVFQPDVPLSLEQYLPIAVVAALDAVFGALRAYLDGIFDDKVFVVSFLSNVVIAAGIVYLGDRLGVGGQLSTGVVVVLGIRIFTNVAAIRRHVFHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY10</accession>
    <name>A0A0Q8UY10_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16115</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893604.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50136">
        <property type="protein sequence ID" value="KRC50136"/>
        <property type="gene ID" value="ASE19_16115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1210594at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012906">
        <property type="entry name" value="PaaX-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013225">
        <property type="entry name" value="PaaX_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07848">
        <property type="entry name" value="PaaX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08223">
        <property type="entry name" value="PaaX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PaaX" evidence="1">
        <location>
            <begin position="13"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="PaaX_C" evidence="2">
        <location>
            <begin position="192"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="248" mass="27236" checksum="3B4CE4B30A04E7AB" modified="2016-01-20" version="1">MPPATTVLKPVTTRSALLTLMLAAEESTLATRELVAAAALVGFAEPTVRVALSRMTAAGDVVRDDEGGYGLSERLLERQGRQERATHPRRRDWDGTWELVVVTTAGRTAADRAELRAELAGLRLAELREGVWTRPANLELDWPERVSAVCERFTAAPVADPAELAARLWDLDAWARSARQLLDATTTEDPVLRFTACATSGRHLLTDPVLPAELLPDGWPGERLRADHVAYKAWINEMRRSLAEAGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYI8</accession>
    <name>A0A0Q8UYI8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">2-hydroxyhepta-2,4-diene-1,7-dioate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20350</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895982.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46210">
        <property type="protein sequence ID" value="KRC46210"/>
        <property type="gene ID" value="ASE19_20350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="775108at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.850.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018833">
        <property type="entry name" value="DUF2437"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011234">
        <property type="entry name" value="Fumarylacetoacetase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036663">
        <property type="entry name" value="Fumarylacetoacetase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10370">
        <property type="entry name" value="DUF2437"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01557">
        <property type="entry name" value="FAA_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56529">
        <property type="entry name" value="SSF56529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2437" evidence="2">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="FAA_hydrolase" evidence="1">
        <location>
            <begin position="68"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="270" mass="28989" checksum="7BC9518CA5042FD4" modified="2016-01-20" version="1">MRIVRFTQGEEPSYGVLTGDLDEYGQPADDAVIVGLAGDPLYVGIKLLEKEYRLDEVRLLAPVLPRSKVVGIGKNYAAHAAEMGGPVPEEPLMFLKPNTSVVGPGDAIQYPRQSSNVHYEGELAVVIGRICRDVPAEQATDVIHGYTIANDVTARDLQKSDGQFTRAKGFDSFCPLGPWIETDLDPNDFTAGRRVQTFLNGEVVQDGTTADMVFDIPALIAHVSSVMTLLPGDVILTGTPEGVGPLEVGDEVEVSIEGLGTLINKVEARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYJ5</accession>
    <name>A0A0Q8UYJ5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">AAA_31 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17210</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893797.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50328">
        <property type="protein sequence ID" value="KRC50328"/>
        <property type="gene ID" value="ASE19_17210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="729012at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_31" evidence="2">
        <location>
            <begin position="83"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="337" mass="36106" checksum="64C8AE2FFDC67A5A" modified="2016-01-20" version="1">MVGTYGGSSAPDMPPRMPMPAPARETGTEVPLGTEDAMTLQFPTPETPMVRVPIEPTADIGPTGRPMPVLPDPKPVTAHGNARVISMCNQKGGVGKTTTTINLGAALAEYGRKVLLVDFDPQGSLSVGLGLNPHEMDMTVYNLLMDPETTLDEVVVPSGVPGMDLLPSNIDLSAAEVQLVHEVAREQTLQRVLAPAMKDYDVILIDCQPSLGLLTVNALTASHGVIVPLECEYFALRGVALLKATIDKVKQRLNPTLEVDGVLGTMYDGRTLHGREVLERLVQAWGDKVFHTVIRRTVKFSDSTVAGEPITSYASSSTGAEAYRQLAKEVAVRCLDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZK3</accession>
    <name>A0A0Q8UZK3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">HIT family hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20685</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896034.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46263">
        <property type="protein sequence ID" value="KRC46263"/>
        <property type="gene ID" value="ASE19_20685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1934382at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.428.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019808">
        <property type="entry name" value="Histidine_triad_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001310">
        <property type="entry name" value="Histidine_triad_HIT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011146">
        <property type="entry name" value="HIT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036265">
        <property type="entry name" value="HIT-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46648">
        <property type="entry name" value="PTHR46648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01230">
        <property type="entry name" value="HIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00332">
        <property type="entry name" value="HISTRIAD"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54197">
        <property type="entry name" value="SSF54197"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00892">
        <property type="entry name" value="HIT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51084">
        <property type="entry name" value="HIT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HIT" evidence="2">
        <location>
            <begin position="5"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Histidine triad motif" evidence="1">
        <location>
            <begin position="95"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="137" mass="14815" checksum="8F2DA74D9B3959B2" modified="2016-01-20" version="1">MADCIFCAIIAGDAEADVVLDEPDLMAFLDRRPVFKGHVLLVPREHHVTLPDLPAAQRDGFLAAAQRLATAVVDGLGAQGSFVAMNNTVSQSVPHLHLHVVPRTKGDGLRGFFWPRRKYADGESAEYAARLRAALAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZS2</accession>
    <name>A0A0Q8UZS2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sugar ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_22445</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896427.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46658">
        <property type="protein sequence ID" value="KRC46658"/>
        <property type="gene ID" value="ASE19_22445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="859573at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025997">
        <property type="entry name" value="SBP_2_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13407">
        <property type="entry name" value="Peripla_BP_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359567" evidence="2">
        <location>
            <begin position="21"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_4" evidence="3">
        <location>
            <begin position="39"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="297"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="298"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="358" mass="36578" checksum="74814795572DBA17" modified="2016-01-20" version="1">MRRNAAITAVAGLGLALSLAACGSDDSGKDSGDAKTGKIGVILPDTKSSVRWESADRPALEDAFKAAGVDYDIKNAEGNADNMTKIADGMIADGVTVLAIVNLDSESGAAIEEKAASQGVKTIDYDRLTLGGSADYYVSFDNNKVGELQGQGLADCLGDKASNIIYLNGSPTDNNATLFAAGAHSVLDKISKYKVVGEQAVPDWDNDEAVTIFEQLFTKAGGKVDGVLAANDGLGGSAISILEKNGLAGKVPVTGQDATVEGLQNILAGTQCMTIYKSAKLEAGALADAAIALASGKEAETNGTTPDSTDNSEVPSILLDPQAITKDTVKDVISDGGQSKDDVCTGDFAKLCTDAGVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1P2</accession>
    <name>A0A0Q8V1P2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">2,3-bisphosphoglycerate-dependent phosphoglycerate mutase</fullName>
            <shortName evidence="4">BPG-dependent PGAM</shortName>
            <shortName evidence="4">PGAM</shortName>
            <shortName evidence="4">Phosphoglyceromutase</shortName>
            <shortName evidence="4">dPGM</shortName>
            <ecNumber evidence="4 5">5.4.2.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">gpmA</name>
        <name evidence="6" type="ORF">ASE19_14965</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4 5">
            <text>(2R)-2-phosphoglycerate = (2R)-3-phosphoglycerate</text>
            <dbReference type="Rhea" id="RHEA:15901"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="ChEBI" id="CHEBI:58289"/>
            <dbReference type="EC" id="5.4.2.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 5">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 3/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the phosphoglycerate mutase family. BPG-dependent PGAM subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.2.11" evidence="4 5"/>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896457.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51390">
        <property type="protein sequence ID" value="KRC51390"/>
        <property type="gene ID" value="ASE19_14965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1122642at2"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00186"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046538">
        <property type="term" value="F:2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01039">
        <property type="entry name" value="PGAM_GpmA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001345">
        <property type="entry name" value="PG/BPGM_mutase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005952">
        <property type="entry name" value="Phosphogly_mut1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11931">
        <property type="entry name" value="PTHR11931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01258">
        <property type="entry name" value="pgm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00175">
        <property type="entry name" value="PG_MUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="2 4" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="3 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="9"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="22"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="88"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="115"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="183"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-phosphohistidine intermediate" evidence="4">
        <location>
            <position position="10"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="4">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="61"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="4">
        <location>
            <position position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC51390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="248" mass="27351" checksum="4F6EA9750E1ABF33" modified="2016-01-20" version="1">MTFTLVLLRHGESEWNAKNLFTGWVDVALTEKGRGEAVRGGELLKEAGILPDVVHTSLQRRAINTAALALDAADRHWIPVRRSWRLNERHYGALQGKDKKAIKDEYGEEQFMLWRRSFDIPPPPLDDSDEYSQAGDPRYADLGDDLPRAEALKQVIDRMLPYWDAGIVPDLRAGHTVLIAAHGNSLRGIVKHLDQMSDADITGLNIPTGMPLVYELDEDTLAPTVPGGRYLDPEAAAAAAAAVANQGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V206</accession>
    <name>A0A0Q8V206_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14895</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896447.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51380">
        <property type="protein sequence ID" value="KRC51380"/>
        <property type="gene ID" value="ASE19_14895"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039498">
        <property type="entry name" value="NTP_transf_5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14907">
        <property type="entry name" value="NTP_transf_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="367" mass="39399" checksum="6ADF0457AF61845E" modified="2016-01-20" version="1">MTSAAFDLLCRMVRRALDAEEGVAGDPVPMGDVAARDLLAAVGRHRVPELLRGQADALGLTPEVVTVLDAMREASRQRQLLHALETVRAWQLLTDAGIDALVFKGIPLAVLTTGTPDARGAGDVDVLVRPGDTAATHRVLRAAGWQLHEAGRIEPEMWAWGYVVRWGRTLTYLGSGADVDLHWRLDTIPGAQPPTEDLMARSVEVPVGGVRIPTLCPADAFHHLAAHREGWIWLRTLVDLRRLARDPSVHDQELGTPALTSLAVARATVGLPAGVPASLHAALDTVPAAALVGAREQHLRPTSTWNGAGPLQDFRYGLASARRPRDLGHVAVGLVLPAHAALQVTATSAWTGVPTALGRRARRFTRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V282</accession>
    <name>A0A0Q8V282_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17350</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893110.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48704">
        <property type="protein sequence ID" value="KRC48704"/>
        <property type="gene ID" value="ASE19_17350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1969278at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016410">
        <property type="entry name" value="Phage_imm"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14373">
        <property type="entry name" value="Imm_superinfect"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="17"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="82" mass="9006" checksum="0C754853C1D4D579" modified="2016-01-20" version="1">MYLELVSDRHRHRLRRVLLAWLATFATCGYLFPWAVATTRGKANADAIGFLNLALGWTVVGWVVALGLACGRHGIAGLRVVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3H1</accession>
    <name>A0A0Q8V3H1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_17805</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893183.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48781">
        <property type="protein sequence ID" value="KRC48781"/>
        <property type="gene ID" value="ASE19_17805"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012226">
        <property type="entry name" value="Diguanyl_cyclase/Pdiesterase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005925">
        <property type="entry name" value="Dos"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="16"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="146"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="3">
        <location>
            <begin position="299"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="2">
        <location>
            <begin position="441"/>
            <end position="695"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="698" mass="76707" checksum="9B2CA691C57BE4E7" modified="2016-01-20" version="1">MGSRTESVVTHAAAVDDDHLRLVVEASPSAMLLVDPSGRIVLANSEAEHSFGYTREELLALRVEDLVPQRFRQHHDVERQEYVAHPSRRGMGVGRELFGLRKDGTEMRVEIGLNPIVISGERFVLASVIDITERLRGQQAEKLAREGELRRSILDSIPFCVIVTDAAGRIVTANPAAESLLGYAQDELIGRWITEVDAVERARYADGTPALSPVGGDEAEWTYRHKDGRAVPVNEAIVALTVDDEPGFIVVAYDITHRIEARERVEHLATHDALTNLPNRSLLVRHLDHAFDSADSDRRQVALLLIDIDHFKRINDSLGHHIGDEMLVVVAERLLAWVREYDVVARLGGDEFVIVFDDLDPGVDLDKRIADLTRAVLAPMVVHGYELAVTASIGGALYPADGDDPAALLKHADIAMYQAKSAGRNGVRWFEHAMLDDNNDRLALSGALRQAIEQEELSLVYQPQVDLVSGQVVGVEALARWSSPLLGAVTPDRFIPVAEDGGMIVELGGWVLRAGCATLARMQRDLGRELRLAVNVSPHQLRSETWLAEIADAIATSGIEPWQLEVELTEGILIEDHGDVVAMLEALRELGVAIVLDDFGCGYSSLAYLTKFPIDKIKIDRSFVQDIADADTDAAIVDAIIVMAHALGMTVVAEGVETEVQERYLRERGCDEVQGYRYSPGVPARDVVTIARELTLTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V414</accession>
    <name>A0A0Q8V414_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8 9">Chorismate synthase</fullName>
            <shortName evidence="8">CS</shortName>
            <ecNumber evidence="4 8 9">4.2.3.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">5-enolpyruvylshikimate-3-phosphate phospholyase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">aroC</name>
        <name evidence="10" type="ORF">ASE19_19220</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 9">
            <text>5-O-(1-carboxyvinyl)-3-phosphoshikimate = chorismate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21020"/>
            <dbReference type="ChEBI" id="CHEBI:29748"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57701"/>
            <dbReference type="EC" id="4.2.3.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8 9">
            <name>FMNH2</name>
            <dbReference type="ChEBI" id="CHEBI:57618"/>
        </cofactor>
        <text evidence="8 9">Reduced FMN (FMNH(2)).</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8 9">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 7/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8 9">Belongs to the chorismate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.5" evidence="4 8 9"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893423.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49021">
        <property type="protein sequence ID" value="KRC49021"/>
        <property type="gene ID" value="ASE19_19220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="981870at2"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00090"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004107">
        <property type="term" value="F:chorismate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd07304">
        <property type="entry name" value="Chorismate_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00300">
        <property type="entry name" value="Chorismate_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000453">
        <property type="entry name" value="Chorismate_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035904">
        <property type="entry name" value="Chorismate_synth_AroC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020541">
        <property type="entry name" value="Chorismate_synthase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21085">
        <property type="entry name" value="PTHR21085"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01264">
        <property type="entry name" value="Chorismate_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001456">
        <property type="entry name" value="Chorismate_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103263">
        <property type="entry name" value="SSF103263"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00033">
        <property type="entry name" value="aroC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00787">
        <property type="entry name" value="CHORISMATE_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00789">
        <property type="entry name" value="CHORISMATE_SYNTHASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 8 9" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0274">FAD</keyword>
    <keyword evidence="8" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="8" id="KW-0288">FMN</keyword>
    <keyword evidence="7 8 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-0521">NADP</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="8">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="135"/>
            <end position="137"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="256"/>
            <end position="257"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="300"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="315"/>
            <end position="319"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="341"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC49021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="392" mass="41952" checksum="75BDD4A439BCBEBD" modified="2016-01-20" version="1">MLRWLTAGESHGPSLVAILEGLPAHVEVTTDDISDSLARRRLGYGRGARMKFEADEVTVTGGVRHGRTQGGPVAIQVGNTEWPKWETVMAADPVEPELLEKQARNAPLTRPRPGHADLAGMQKYDFEDARPILERASARETAARVALGRVASNFLEQATGARIVSHVLEIGGVRTPSRDVPLPDDVTRLDEDPVRCLDPDGSKQMIERIDQAHKDGDTLGGVVEVVVHGLPPGLGSHVHWDRRLDARLAGALMGIQAIKGVEVGDGFELAATPGSLAHDEIVPTDEGLRRVSGRSGGTEGGMTTGEVLRVRAAMKPIATVPRALRTVDLATGEEAVAHHQRSDVCAVPAAGIVAEAMVALVLADAVLEKFGGDSVGETRRNVQTYLDNLRYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4H3</accession>
    <name>A0A0Q8V4H3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Cytidylate kinase</fullName>
            <shortName evidence="8">CK</shortName>
            <ecNumber evidence="8">2.7.4.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Cytidine monophosphate kinase</fullName>
            <shortName evidence="8">CMP kinase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">cmk</name>
        <name evidence="10" type="ORF">ASE19_17170</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + CMP = ADP + CDP</text>
            <dbReference type="Rhea" id="RHEA:11600"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58069"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.25"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>ATP + dCMP = ADP + dCDP</text>
            <dbReference type="Rhea" id="RHEA:25094"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57566"/>
            <dbReference type="ChEBI" id="CHEBI:58593"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.25"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the cytidylate kinase family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.25" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893899.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50371">
        <property type="protein sequence ID" value="KRC50371"/>
        <property type="gene ID" value="ASE19_17170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036430">
        <property type="term" value="F:CMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036431">
        <property type="term" value="F:dCMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006220">
        <property type="term" value="P:pyrimidine nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02020">
        <property type="entry name" value="CMPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00238">
        <property type="entry name" value="Cytidyl_kinase_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003136">
        <property type="entry name" value="Cytidylate_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011994">
        <property type="entry name" value="Cytidylate_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02224">
        <property type="entry name" value="Cytidylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00017">
        <property type="entry name" value="cmk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Cytidylate_kin" evidence="9">
        <location>
            <begin position="16"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="20"/>
            <end position="28"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009427"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC50371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="228" mass="23721" checksum="201BD5413A1FACF8" modified="2016-01-20" version="1">MRAVNEQVQVPVNVVVAVDGTSGSGKSSTCRAVADRLGLRYLDTGAQYRAMTWWMLRQGVDVHDADAVAARALDPVIVSGTDPLAPAITVDGTDVSVEIRSDEVNAAVSPVSAVPEVRARLVDLQREIVGDGGIVVEGRDIGSVVCPGAEVKVYLTADPSARAARRALENGGADVAATEASLLARDEIDSGRAVAPLTKVDGAVHIDSTDRTLDEVIDIVVGLVTESV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5K3</accession>
    <name>A0A0Q8V5K3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09355</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894572.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52634">
        <property type="protein sequence ID" value="KRC52634"/>
        <property type="gene ID" value="ASE19_09355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="34"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="83" mass="8420" checksum="7A88EE812A8737B4" modified="2016-01-20" version="1">MGTLLDLRVVLVAAVVASPAAYRASQGLLSPDQAMARFVAVFLAVAATTVLVRAVWPLVAGTSTDTGTDAGVPDGEELSPPPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5U7</accession>
    <name>A0A0Q8V5U7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Enoyl-CoA hydratase 2</fullName>
            <ecNumber evidence="1">4.2.1.119</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Enoyl-CoA hydratase 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_09810</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a (3R)-3-hydroxyacyl-CoA = a (2E)-enoyl-CoA + H2O</text>
            <dbReference type="Rhea" id="RHEA:26526"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57319"/>
            <dbReference type="ChEBI" id="CHEBI:58856"/>
            <dbReference type="EC" id="4.2.1.119"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.119" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894651.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52714">
        <property type="protein sequence ID" value="KRC52714"/>
        <property type="gene ID" value="ASE19_09810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1924578at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005835">
        <property type="term" value="C:fatty acid synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004312">
        <property type="term" value="F:fatty acid synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003965">
        <property type="entry name" value="Fatty_acid_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002539">
        <property type="entry name" value="MaoC-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01575">
        <property type="entry name" value="MaoC_dehydratas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01483">
        <property type="entry name" value="FASYNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC-like" evidence="5">
        <location>
            <begin position="5"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00029334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00030115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="133" mass="13577" checksum="CDF852DE63E7CF5D" modified="2016-01-20" version="1">MNDLTPGAELETKTFDVTRADLVAYAHASGDHNPIHQDEEIALAVGLPGVIAHGMYTLALVGRAIGEWTGGAEVVEIGAKFVAPVVVPAEGAAQVTVAGTVGERTDDGLLPLALTITVDGTKVLGAPRATVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5Y6</accession>
    <name>A0A0Q8V5Y6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09500</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894598.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52660">
        <property type="protein sequence ID" value="KRC52660"/>
        <property type="gene ID" value="ASE19_09500"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="11"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="198" mass="22065" checksum="EE7AA13ABDF37CBB" modified="2016-01-20" version="1">MPPRAAPLSPEDRREALIRATRPLLYEHGTRVTTKLIAEAAGVAEGTIFRVFDSKDDLIDATITRAFEPGDVLTRLDEIDPALPLRDRMLAMTSILQQRFLAIFELMRALGAVGPPRHLHDRPEIADGLAEVRRRLLALIEPDAQHLTMPPEQVLHVWRLLTFAGSHREIADNDLLTPAQIVDTVLNGVARNPNRSDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V612</accession>
    <name>A0A0Q8V612_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_09895</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894661.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52726">
        <property type="protein sequence ID" value="KRC52726"/>
        <property type="gene ID" value="ASE19_09895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="4">
        <location>
            <begin position="298"/>
            <end position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="380" mass="41055" checksum="FFE7B04BCC02B442" modified="2016-01-20" version="1">MARGLTAERVRQDVDVVARAGLDLETFLAEAVESVRRAVPWVSACVGTHDPSTVMLTTARKFGDLSETDSRDHEFGLIEYGDPEATSFIELARSDMSAASVHLLTGGEIGRSRRMADFHLPNFGYRDELRVTYRSGGEVWGGMGLFRGSDDRPFDAEEVAFIASLAAPFARGVRTGVLARLAEVPAPALGDGVTPSGPAVVIVGPDNAITQLTPAAQHRLDEMAMGPAHAVPSVVAGLIAAARRYARGESQDPARCRVRTPGGMWLVLQAGPLSAFNDRDGDIVLTIEEARPPEIVSLVVAAFGLTTRERDVTQLVLQGVDTKEIAQTLHLSSYTVQDHLKSVFDKADVRSRRELIAKVYFDQYVPRRGQEVGASGWFSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V683</accession>
    <name>A0A0Q8V683_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10820</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894826.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52894">
        <property type="protein sequence ID" value="KRC52894"/>
        <property type="gene ID" value="ASE19_10820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1999359at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="151" mass="16613" checksum="0E3554C30C2DC29A" modified="2016-01-20" version="1">MADEQQQVDQRALAVALFNGTWALLDKAGRTDDETDRMLHMAHASRFHWDAVGTDENRAGGEWQCSRVYVELGRPEPALHHARRCLAYAARPGVAAWMRASAEEALARALLLADDRPGALAARDRGLALLATEQDEEDREIIAADLASLPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6B6</accession>
    <name>A0A0Q8V6B6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11005</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894858.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52926">
        <property type="protein sequence ID" value="KRC52926"/>
        <property type="gene ID" value="ASE19_11005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1734570at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359741" evidence="2">
        <location>
            <begin position="29"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="180"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="206"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="257"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="31101" checksum="8191470BA78C7604" modified="2016-01-20" version="1">MRTFSAFLLVVVATILAPFVIATTWVTARVDDRQEYVDTVAPLAEDPAVRTVMADSASAAAVAALQQYVPIQLPAAVGEWAREAARTVVESPAFPDYWRETNTDLHDDVIAILEDPDASRSGYLTVDGSRVVALVLAELAGRGIPIAVLPRIPLQVPVVERAKIVDAGPAYRAAHGPARALPFLWAGMVAAAVLLASGWRGRIRTLGLAALGGALGAVVVMVAVGPLTDAAVDKAQTRDQDLVRVMLDTVLSSLSPYARGFLVAVPVGIVLVAGSLWRSSREQEPDPRVSWDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6K0</accession>
    <name>A0A0Q8V6K0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Redox-sensing transcriptional repressor Rex</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rex</name>
        <name evidence="8" type="ORF">ASE19_10215</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the transcriptional regulatory Rex family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894716.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52783">
        <property type="protein sequence ID" value="KRC52783"/>
        <property type="gene ID" value="ASE19_10215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1872374at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051775">
        <property type="term" value="P:response to redox state"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01131">
        <property type="entry name" value="Rex"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009718">
        <property type="entry name" value="Rex_DNA-bd_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022876">
        <property type="entry name" value="Tscrpt_rep_Rex"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35786">
        <property type="entry name" value="PTHR35786"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02629">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06971">
        <property type="entry name" value="Put_DNA-bind_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0520">NAD</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0678">Repressor</keyword>
    <keyword evidence="5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 6" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="CoA_binding" evidence="7">
        <location>
            <begin position="86"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="6">
        <location>
            <begin position="23"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="97"/>
            <end position="102"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC52783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="234" mass="24526" checksum="00F150FE3C7FE12E" modified="2016-01-20" version="1">MTARSSTDANRVIPEATVARLPVYLRALTALADSGIRTCSSEDLASAAGVNSAKLRKDLSYLGSYGTRGVGYDVDYLRYQIAREIGVTQDWPVVIVGIGNLGHALANFSGFRSRGFRIVALLDADPELVGQTVAGVQVQPFDELEETVRNHDVAIGVIATPAVAAQDVADRMVAIGITSILNFAPAVLAVPEGVDVRKVDLSIELQILAYHEQRKANGAEPGPAAAATADGGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6W4</accession>
    <name>A0A0Q8V6W4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11120</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894881.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52948">
        <property type="protein sequence ID" value="KRC52948"/>
        <property type="gene ID" value="ASE19_11120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1893426at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014447">
        <property type="entry name" value="UCP006909"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006909">
        <property type="entry name" value="UCP006909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="98" mass="11247" checksum="D3347BA44C946359" modified="2016-01-20" version="1">MIFKRVGIGRPYPDHGLTSKGWAAVPPRQVRLDELVTTKDTLQLTSLLDEDSTFYGDLFAHVVLWRGEYYLEDGLHRALRAALQQRNVLHARVIRMEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6W6</accession>
    <name>A0A0Q8V6W6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16785</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893722.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50253">
        <property type="protein sequence ID" value="KRC50253"/>
        <property type="gene ID" value="ASE19_16785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1848948at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="113"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="14562" checksum="F85511BC43B9266B" modified="2016-01-20" version="1">MKAPTPLRAFGAAVALPQAVIGVWALVTPRGWFDDFPGIGPALAAAEPPFNQHLVTDAAAGFLATGVLLLGASLLGDAAAIRVAAIGHLLFNVPHLAFHAANPSPLLPALNDVLNVVLIGAEVAAGVTLLVLTTHRKAMAWAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V818</accession>
    <name>A0A0Q8V818_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RibD_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14190</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897019.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53484">
        <property type="protein sequence ID" value="KRC53484"/>
        <property type="gene ID" value="ASE19_14190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1920912at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008703">
        <property type="term" value="F:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002734">
        <property type="entry name" value="RibDG_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01872">
        <property type="entry name" value="RibD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="SSF53597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RibD_C" evidence="1">
        <location>
            <begin position="4"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="204" mass="21976" checksum="48F4997BB9E6C27B" modified="2016-01-20" version="1">MGIVTADISTSLDGFGSGPGQCLERPFGDLDQGPMHAWMFDHGDENRAEVDAIVDAGAFVMGRNMFDPGRGPHDVQWRGWWGEEPPYHAPVFVLTHHARTPLEMDGGTTFHFVTDGLDSALAQAREAAGDRTVSIAGGASTINACLAAGVLDELRWHVTPFVSGFSAAEGHRGSRLFDGVPELGMVQVGVRQTPHVTHLTYRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V846</accession>
    <name>A0A0Q8V846_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">Transaldolase</fullName>
            <ecNumber evidence="6 7">2.2.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tal</name>
        <name evidence="8" type="ORF">ASE19_15895</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>D-glyceraldehyde 3-phosphate + D-sedoheptulose 7-phosphate = beta-D-fructose 6-phosphate + D-erythrose 4-phosphate</text>
            <dbReference type="Rhea" id="RHEA:17053"/>
            <dbReference type="ChEBI" id="CHEBI:16897"/>
            <dbReference type="ChEBI" id="CHEBI:57483"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="2.2.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 7">Carbohydrate degradation; pentose phosphate pathway; D-glyceraldehyde 3-phosphate and beta-D-fructose 6-phosphate from D-ribose 5-phosphate and D-xylulose 5-phosphate (non-oxidative stage): step 2/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 7">Belongs to the transaldolase family. Type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.2" evidence="6 7"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893565.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50098">
        <property type="protein sequence ID" value="KRC50098"/>
        <property type="gene ID" value="ASE19_15895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="417261at2"/>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00414"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004801">
        <property type="term" value="F:transaldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00955">
        <property type="entry name" value="Transaldolase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00493">
        <property type="entry name" value="Transaldolase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001585">
        <property type="entry name" value="TAL/FSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004732">
        <property type="entry name" value="Transaldolase_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018225">
        <property type="entry name" value="Transaldolase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10683">
        <property type="entry name" value="PTHR10683"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00923">
        <property type="entry name" value="TAL_FSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036915">
        <property type="entry name" value="Trnald_Bac_Plnt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00876">
        <property type="entry name" value="tal_mycobact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01054">
        <property type="entry name" value="TRANSALDOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00958">
        <property type="entry name" value="TRANSALDOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0570">Pentose shunt</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0704">Schiff base</keyword>
    <keyword evidence="7 8" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="7">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001469"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00008426"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC50098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="368" mass="38753" checksum="63546E60E8FBD171" modified="2016-01-20" version="1">MTDRLKALADAGVSIWLDDLSRERIETGNLAELVTSSSVVGVTTNPTIFAGAISNGERYDEQVRALVADGADADGVIFALTTEDVRNACDILAPVAASTKDDGRVSIEVEPTLANDTAATVASAKALWAAVDRPNALIKIPATLEGLPAITEVIAAGISVNVTLIFSVERYRAVMDAYLTGLEQARAAGIDLSTIRSVASFFVSRVDSEIDARLDKIGTDEALALRGKAAVANARLAYAAFEEVVASDRWQALAAAGANAQRALWASTGVKNPAYPDTLYVSDLVVADTVNTMPEKTMQAFADHGEVTGDQVTGKAAEAQAVFDQLAAAGIDLDDVFVVLETEGVDKFKVSWTELIETVQTQMAKAKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8X3</accession>
    <name>A0A0Q8V8X3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Transport permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_11495</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ABC-2 integral membrane protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895193.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53638">
        <property type="protein sequence ID" value="KRC53638"/>
        <property type="gene ID" value="ASE19_11495"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC_2_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006648">
        <property type="entry name" value="DrrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51012">
        <property type="entry name" value="ABC_TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="39"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="93"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="118"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="153"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="206"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="ABC2_membrane" evidence="9">
        <location>
            <begin position="4"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU361157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="233" mass="25150" checksum="CC8A316A51A52178" modified="2016-01-20" version="1">MNLRNPAWVIIGMLQPVLYLLLFGPLLKPVIAQLGGNQYTWFVPGMLVQLGIFGAFFAGFSLIGEWREGVIEAERVTPAHRSALLFGRLYRDLLQLFVQAVILVVLGLVLGMDASIGGIVVGVALTLLLGGACAAASNALALTVKSEDVMAPVINVVMMPVLLLSGILLPMSFGAGWLERLSDFMPIKHVVDAVRGAFFGDFDGSMLWGVGWTFVLFGLAVWWGTAVFRKENA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8Z2</accession>
    <name>A0A0Q8V8Z2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">GH16 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06955</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53822">
        <property type="protein sequence ID" value="KRC53822"/>
        <property type="gene ID" value="ASE19_06955"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1046649at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000757">
        <property type="entry name" value="GH16"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00722">
        <property type="entry name" value="Glyco_hydro_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51762">
        <property type="entry name" value="GH16_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359809" description="GH16 domain-containing protein" evidence="1">
        <location>
            <begin position="28"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="domain" description="GH16" evidence="2">
        <location>
            <begin position="49"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51762"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="310" mass="33810" checksum="2774A3E96F114326" modified="2016-01-20" version="1">MGETLLRPRHALIAALLAALVALPAIGAPDGATGPAVADATARVAATAPTDACGVRPKRPDGTYYACSFIDGFGGTALDRRKWAVTETKVSAMSGGSLSCYVDNSRTIAVSNGVLRLTSTYLPTSFRCKSPGTTWATRAEAATITTRSLFTQTNGRFEARIKMPAEAGIAGSHSAFWLYPQELTYGRWPASGEVDIAEWFSAKADHVYPSVHYGGEIRSKSTGYDCAMPTSSTAFHTYAVEWNKSEMKFSFDGKVCFTHAWKPFLLRSPKPFDKPFYMVLTQVWGKAWNTRVSAMPSKSTMQVDWVKVWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V984</accession>
    <name>A0A0Q8V984_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Bac_transf domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_07445</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial sugar transferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895341.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53909">
        <property type="protein sequence ID" value="KRC53909"/>
        <property type="gene ID" value="ASE19_07445"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003362">
        <property type="entry name" value="Bact_transf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02397">
        <property type="entry name" value="Bac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359818" description="Bac_transf domain-containing protein" evidence="2">
        <location>
            <begin position="27"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_transf" evidence="3">
        <location>
            <begin position="3"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="234" mass="25866" checksum="78DEB5CFD3103E66" modified="2016-01-20" version="1">MRKRVFDVVVICLAAVVWVPVVTLSAAAVLIFSGRPIFYRSRRWVGPGTIIEMVKLRVMVRDANKVVAPVDAGRFLNTPPDSPLYTGVGRILDRLGLNEIPQFVHVLRGDMTIVGARPLTEMVREALVELHPDLDTRWETPAGLTGLPQLIGRHGVTDQQRLELEAAYSHRAATRPSVILDFRILLSTVLITFGLKKPMTYDKAMAMAIGRPARRTVQVPDLSTGYYGAEADVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9P8</accession>
    <name>A0A0Q8V9P8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-oxoacyl-ACP reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07370</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895326.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53894">
        <property type="protein sequence ID" value="KRC53894"/>
        <property type="gene ID" value="ASE19_07370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1601931at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="251" mass="26854" checksum="FDB334100B230BA2" modified="2016-01-20" version="1">MSAPEGSAAPRTVIITGGSRGLGEGIVQHFLDAGDRVATCARSETDAVRTWQKDPAYDGRFLFREVDLADREACTAFVKDVLGEWKSVDILVNNAGVARDGILALFSDEDTDTVIDLNLKATIHLSRQIVRNMLAHGGGRIVNISSITGLTGYRGLSVYGATKAALDGFTRGLAREVGSRKITVNSIASGYLKTEMSHGLDDGQLQQIIRRTPAGRLGDPEDIARAIAFLVDEKNDWITGQVLVVDGGLTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Q7</accession>
    <name>A0A0Q8V9Q7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Aldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_06990</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895259.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53828">
        <property type="protein sequence ID" value="KRC53828"/>
        <property type="gene ID" value="ASE19_06990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="618655at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026460">
        <property type="entry name" value="Aldehyde_dehydrogenase_Rv0768"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04284">
        <property type="entry name" value="aldehy_Rv0768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="4">
        <location>
            <begin position="20"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="486" mass="50259" checksum="6FB6A72274C48317" modified="2016-01-20" version="1">MSALPPPAQQLIDGKLVAASSGASYPILNPADGSEIGVAPDGTAADVDAAIAAARRAFDESSWSTDVELRVRCLRQLHAALLENADAFRALTTAEVGMPGFMMGAAGFDVPVDGLKWVTDLLESYEFETDLGVASPMGIRSRRTVRREPVGVVAAITPWNVPTQINLAKVGPALAAGCTVVLKPAPDTPWVAAELGRLVAEHTDIPAGVFNVVTPRSNEVASVLSTDPRVDMVSFTGSTGVGRAIMAAAAPTLKKVFLELGGKSAAIALDDADVAAVAGGTAFAACIHAGQGCAITTRLIVPRDRYDEAVTVAAQTMESIGAKDPADPGAICGPVISAVQRDRVAAYFDVALEEGGRFATGGSIIDQDGFWVQPTVVAGLDNSSRLAQEEIFGPVLVVIPHDGDDDAVRIANDSAYGLSGSVDSGSLERARAVAARIRTGTLAVNGGVWFSPDAPFGGYKQSGIGREMGVAGFEEYLETKTLAFPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9W2</accession>
    <name>A0A0Q8V9W2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Twin-arginine translocation pathway signal protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_07735</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="PTM">
        <text evidence="3">The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the sulfatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895389.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53958">
        <property type="protein sequence ID" value="KRC53958"/>
        <property type="gene ID" value="ASE19_07735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1067869at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024607">
        <property type="entry name" value="Sulfatase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00149">
        <property type="entry name" value="SULFATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359836" evidence="4">
        <location>
            <begin position="40"/>
            <end position="470"/>
        </location>
    </feature>
    <feature type="domain" description="Sulfatase" evidence="5">
        <location>
            <begin position="55"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="modified residue" description="3-oxoalanine (Cys)" evidence="3">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR600917-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="470" mass="51067" checksum="25F9806D4E4E2B2E" modified="2016-01-20" version="1">MPDPSARPSGLSRRGLAGAAVGAVGAAALVGTTAETARAEQPFRAIARKGRRPRPNLLVILADDLGAADLSSYGSPNIKTPNLDRLAASGVRFTQGYSAGAVCSPTRIALYTGRHPGRIPGGLQEPIGQAGPANGIPPEHPTLASLLKQSGYSTHMVGKWHGGFLPWFSPLKSGWDTFYGNYSGGIDYFSKWSSGGYDLWEGEQQVEDPRYYTDIITEKAIGVLRDVQDQKKPWLFNLNFTSPHWPWEGPGDKAVSDEITAKVKAGNGQALFHYDGGSLDKYVEMVENLDRSIGKVLAELERTGQDKDTLILFASDNGGERFSYNWPFTGNKAGVNEGGIRVPAILSWPGQLGKRQVDDTPVSTTDWTATFLELAGASPDPSYPLDGTSLVPHLFEGEDVPERDLFWRTRSGRALRRGDLKYVRLNNTDYLYDLGADVREQANLAAKRPADLAELRSAWEAVNATLLAYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA56</accession>
    <name>A0A0Q8VA56_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Mycothiol acetyltransferase</fullName>
            <shortName evidence="2">MSH acetyltransferase</shortName>
            <ecNumber evidence="2">2.3.1.189</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Mycothiol synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mshD</name>
        <name evidence="4" type="ORF">ASE19_07475</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranoside + acetyl-CoA = CoA + H(+) + mycothiol</text>
            <dbReference type="Rhea" id="RHEA:26172"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16768"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:58887"/>
            <dbReference type="EC" id="2.3.1.189"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acetyltransferase family. MshD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.189" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54197">
        <property type="protein sequence ID" value="KRC54197"/>
        <property type="gene ID" value="ASE19_07475"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035447">
        <property type="term" value="F:mycothiol synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010125">
        <property type="term" value="P:mycothiol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01698">
        <property type="entry name" value="MshD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017813">
        <property type="entry name" value="Mycothiol_AcTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF021524">
        <property type="entry name" value="MSH_acetyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03448">
        <property type="entry name" value="mycothiol_MshD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="3">
        <location>
            <begin position="126"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="region of interest" description="Acetyl-CoA binding 1" evidence="2">
        <location>
            <begin position="54"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Acetyl-CoA binding 2" evidence="2">
        <location>
            <begin position="204"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="Acetyl-CoA binding 2" evidence="2">
        <location>
            <begin position="211"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="region of interest" description="Acetyl-CoA binding 2" evidence="2">
        <location>
            <begin position="243"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="22"/>
        </location>
        <ligand>
            <name>1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranoside</name>
            <dbReference type="ChEBI" id="CHEBI:58887"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranoside</name>
            <dbReference type="ChEBI" id="CHEBI:58887"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranoside</name>
            <dbReference type="ChEBI" id="CHEBI:58887"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranoside</name>
            <dbReference type="ChEBI" id="CHEBI:58887"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="238"/>
        </location>
        <ligand>
            <name>1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranoside</name>
            <dbReference type="ChEBI" id="CHEBI:58887"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="269" mass="28524" checksum="4D4832D90CE9F044" modified="2016-01-20" version="1">MAAIGAVRAAIRAAGEADPLDEAADLRLRHGLDGIDAFVTAEGFALRRGAELDVAVAPSARRAGLGQRLARLATQQPGELAAWSHGDDPAARAIADRLGFVRARDLWVMRRPTAVPLPATELPADVRIRDYGDGDAGALLAVNAAAFAHHPEQGGLDHEGLAERMAEPWFDPAGLLLAVDPDGNLLGFHWTKQHDAATGEVYVVGVSPAAQGRGLGRALTLAGLHHLASRGVGEVLLYVESDNAPARHLYGTLGFTHDPRDTHVQYRRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAA6</accession>
    <name>A0A0Q8VAA6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16300</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893635.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50167">
        <property type="protein sequence ID" value="KRC50167"/>
        <property type="gene ID" value="ASE19_16300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1306955at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008703">
        <property type="term" value="F:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002734">
        <property type="entry name" value="RibDG_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01872">
        <property type="entry name" value="RibD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="SSF53597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RibD_C" evidence="1">
        <location>
            <begin position="4"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="187" mass="20206" checksum="A969976C295C3A46" modified="2016-01-20" version="1">MRRLTYAMNVSVDGYVAAPGDDLSWGAPSDELFQWWSDRVAATGLALYGRRLWQTMSAHWPTAADQPGATPAHVEYAGRWLAMPKVVFSSTISAVDWNARLFTGDAVAEITRLKAEDGAPLEIAGATLAATAMRAGLIDEYVLVTAPVILGGGTPYFTALDSWVDLDVVETRAFPGGVLLTRFATRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAE6</accession>
    <name>A0A0Q8VAE6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Proteasome subunit alpha</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">20S proteasome alpha subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Proteasome core protein PrcA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">prcA</name>
        <name evidence="5" type="ORF">ASE19_16570</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.</text>
    </comment>
    <comment type="activity regulation">
        <text evidence="2">The formation of the proteasomal ATPase ARC-20S proteasome complex, likely via the docking of the C-termini of ARC into the intersubunit pockets in the alpha-rings, may trigger opening of the gate for substrate entry. Interconversion between the open-gate and close-gate conformations leads to a dynamic regulation of the 20S proteasome proteolysis activity.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein degradation; proteasomal Pup-dependent pathway.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">The 20S proteasome core is composed of 14 alpha and 14 beta subunits that assemble into four stacked heptameric rings, resulting in a barrel-shaped structure. The two inner rings, each composed of seven catalytic beta subunits, are sandwiched by two outer rings, each composed of seven alpha subunits. The catalytic chamber with the active sites is on the inside of the barrel. Has a gated structure, the ends of the cylinder being occluded by the N-termini of the alpha-subunits. Is capped by the proteasome-associated ATPase, ARC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the peptidase T1A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893684.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50215">
        <property type="protein sequence ID" value="KRC50215"/>
        <property type="gene ID" value="ASE19_16570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1243753at2"/>
    <dbReference type="UniPathway" id="UPA00997"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019773">
        <property type="term" value="C:proteasome core complex, alpha-subunit complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004298">
        <property type="term" value="F:threonine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019941">
        <property type="term" value="P:modification-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010498">
        <property type="term" value="P:proteasomal protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00289_B">
        <property type="entry name" value="Proteasome_A_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023332">
        <property type="entry name" value="Proteasome_alpha-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022296">
        <property type="entry name" value="Proteasome_asu_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001353">
        <property type="entry name" value="Proteasome_sua/b"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11599:SF69">
        <property type="entry name" value="PTHR11599:SF69"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00227">
        <property type="entry name" value="Proteasome"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03691">
        <property type="entry name" value="20S_bact_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51475">
        <property type="entry name" value="PROTEASOME_ALPHA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2 3" id="KW-0647">Proteasome</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="234"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="265" mass="28676" checksum="BB19A31801A5D819" modified="2016-01-20" version="1">MSTPFYVSPEQLMKDRADFARKGIARGRSLVAVQYADGVLLVTENPSQALHKVSELYDRLAFAAVGRYNEFENLRIAGVRLADMRGYSYDRRDVTGRGLANAYAQTLGTIFSSGGEKPYEVEIFVAEIGETSADDQIYRLTYEGRVADEHGYAVMGGDADTVSSYLKENYADGADLAGALKVAVAALGHSADGGQVQDRVIPVEDLEVAVLDRTRTQPRKFRRILPTRLAELLGERGPAEAAPETHTSETPANGGPAEPPVAPPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAL7</accession>
    <name>A0A0Q8VAL7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06750</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54182">
        <property type="protein sequence ID" value="KRC54182"/>
        <property type="gene ID" value="ASE19_06750"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="41"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="395" mass="41688" checksum="A92255A3EE683B73" modified="2016-01-20" version="1">MRNTPGLTGDALLVAGLLIVGIIVTSTIVGNYQTIKPWDAKYKFAAEFDEAPAVQLAARQEVRIAGVPVGRITGAEPTDGGNARVMLSVDKGHPVYKNARLVLRSKTPLNVMYIALDPGDPAAGRLPEDGVIPVTQTERVVQPYELLDELDDRARAALTDLVTQADIALASAPATLPKGLADTDHAAHSFTGVVDALQSRRANLRHLVTSLSQIATAAGHDDERLDTLVSSLADTLAVVSRRDAEMSASLAALPGVTTSLREAMTETKSLTDELSPVLRKLHAASEELPSAVRDLSKTVDSAQSLVAKARPVVRKAVPVVDDLRPLARDLNSAVSDLGPVAANLPQATKRLVPWLDDLGAFVYNTSSSFSLGDVNGGLGRANVVVKLYDPLGGLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAN5</accession>
    <name>A0A0Q8VAN5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">Polyphosphate kinase</fullName>
            <ecNumber evidence="6 7">2.7.4.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">ATP-polyphosphate phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Polyphosphoric acid kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ppk</name>
        <name evidence="12" type="ORF">ASE19_07495</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7">Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>[phosphate](n) + ATP = [phosphate](n+1) + ADP</text>
            <dbReference type="Rhea" id="RHEA:19573"/>
            <dbReference type="Rhea" id="RHEA-COMP:9859"/>
            <dbReference type="Rhea" id="RHEA-COMP:14280"/>
            <dbReference type="ChEBI" id="CHEBI:16838"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="PTM">
        <text evidence="6 7">An intermediate of this reaction is the autophosphorylated ppk in which a phosphate is covalently linked to a histidine residue through a N-P bond.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the polyphosphate kinase 1 (PPK1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.1" evidence="6 7"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54198">
        <property type="protein sequence ID" value="KRC54198"/>
        <property type="gene ID" value="ASE19_07495"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009358">
        <property type="term" value="C:polyphosphate kinase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008976">
        <property type="term" value="F:polyphosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006799">
        <property type="term" value="P:polyphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1840.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00347">
        <property type="entry name" value="Polyphosphate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003414">
        <property type="entry name" value="PP_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041108">
        <property type="entry name" value="PP_kinase_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024953">
        <property type="entry name" value="PP_kinase_middle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036830">
        <property type="entry name" value="PP_kinase_middle_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025200">
        <property type="entry name" value="PPK_C_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025198">
        <property type="entry name" value="PPK_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036832">
        <property type="entry name" value="PPK_N_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30218">
        <property type="entry name" value="PTHR30218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02503">
        <property type="entry name" value="PP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13090">
        <property type="entry name" value="PP_kinase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17941">
        <property type="entry name" value="PP_kinase_C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13089">
        <property type="entry name" value="PP_kinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015589">
        <property type="entry name" value="PP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140356">
        <property type="entry name" value="SSF140356"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03705">
        <property type="entry name" value="poly_P_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 6 7" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PP_kinase_N" evidence="9">
        <location>
            <begin position="21"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="PP_kinase" evidence="8">
        <location>
            <begin position="136"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="domain" description="PP_kinase_C_1" evidence="11">
        <location>
            <begin position="341"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="domain" description="PP_kinase_C" evidence="10">
        <location>
            <begin position="514"/>
            <end position="674"/>
        </location>
    </feature>
    <feature type="active site" description="Phosphohistidine intermediate" evidence="6">
        <location>
            <position position="446"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="59"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="386"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="416"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="479"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="575"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="603"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02503"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC54198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="694" mass="78418" checksum="E30DA731E3EE7497" modified="2016-01-20" version="1">MEPYTPDPALVEHIESVDNRFVDRELSWLRFNERVLELAEDESLPLLERTRFLAIFTSNLDEFFMVRVAGLKRRIATGLAVRAASGLMPREVLEAIWTRTDELSQRHASVFQHKIVPSLREQGIELVRWADLDRDEQKFCKKLFKERVYPVLTPLAVDPAHPFPYISGLSLNLAVLIRNPKTGKEHFARVKVPSNFDRFVAVGNARFVPLEDVIGAHLGRLFPGMEVLEVHTFRVTRNEDLEVEEDDAENLLAALEKELLRRKFGPPVRLEVEESIAPSVLDLLVSELDITQEEVFRLPGPLDLRGLHSIADLPRDDLKYPSFVPATHARLAEVESAAPVDVFKALRRRDVLLHHPYDSFATSVQRFIEQAAADPHVLAIKQTLYRTSGDSPIIDALIDAAEAGKQVLVLVEIKARFDEQANIRWARKLEKAGCHVVYGLVGLKTHCKLAMVVRDEPEGIRRYTHIGTGNYNPKTSRMYEDLGLLTTDVTIGEDVAHLFNNLSGWSRKATYEQLLVAPDSVRTGLIDLVHREIEHHRAGLPAGIRIKANSVVDEEIIDALYLASAEGVPVELLVRGICALRPGVPGLSEHIKVRSILGRYLEHSRIFSFEGGGEPTAWIGSADMMHRNLDRRVEVLVRLPEQSRDDVRRLLDLAFAPTTQAWELGADAHWVRNDGAEHLQETLIERQRNRRSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBV6</accession>
    <name>A0A0Q8VBV6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04530</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894332.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54750">
        <property type="protein sequence ID" value="KRC54750"/>
        <property type="gene ID" value="ASE19_04530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1408716at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="294" mass="30854" checksum="E68321AC44777D48" modified="2016-01-20" version="1">MPSALGKRRLTLRPGTPVLARSPGVLQVGLDEPGVRVPDEPAVRSLLSALGAGRGVTEPLDELDPESAGLLERLRAAGLVVVVPDGEGVADPADVLLRAQFGPDAVRRRAARARAVVAVRAAPAAEPVLGPLLERAGLRRTAGPDVEDATVHLVVGNGPVDRERLDPLVRASLPHLVVSGAAGGRRLGPFVDPGRTACLRCVDAHEALHDARRPLLVAQAARAAAETPPPVDPVLDLLVLAWAVRDLTRFVEGDLPSTWSTTYDVGPALGPDRVRWGRHPDCGCAWDDAATLFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC34</accession>
    <name>A0A0Q8VC34_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_05030</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894251.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54830">
        <property type="protein sequence ID" value="KRC54830"/>
        <property type="gene ID" value="ASE19_05030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="11"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="126"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="243"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="397" mass="43475" checksum="06104238220B8B43" modified="2016-01-20" version="1">MTRLCQTEGLSEDQSEILKAVRVFVDEQIIPVAQELEHADEYPQDIIDGLKELGVFGLTIPEEFGGLGESLLTYALVVEEIARGWMSVSGVINTHFIVAYLLMQHGTEEQKAKYLPRMATGEVRGAFSMSEPGLGSDVSAVSTKATKQDDGSYSITGQKMWLTNGATSTLVALLTKTDEGAESVYKNMTTFLVEKEAGFGETAQGVTVPGKIDKMGYKGVETTELILEGHQIAADQILGGEPGKGFFQMMDGVEVGRVNVAARACGLAWRGFELGVAYAQQRKTFGKVIAEHQAVLFRIAEMATKVEVAHTMMVRAARLKDTGARMDVEAGMAKMVASEYANEVVEDSFRIHGGYGYSKEYEIERLMREVKFMLIGEGTSDIQKMIIGRSLLKDYKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC72</accession>
    <name>A0A0Q8VC72_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Molybdopterin biosynthesis-like protein MoeZ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_04595</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894322.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54760">
        <property type="protein sequence ID" value="KRC54760"/>
        <property type="gene ID" value="ASE19_04595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1408716at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008641">
        <property type="term" value="F:ubiquitin-like modifier activating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045886">
        <property type="entry name" value="ThiF/MoeB/HesA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000594">
        <property type="entry name" value="ThiF_NAD_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035985">
        <property type="entry name" value="Ubiquitin-activating_enz"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10953">
        <property type="entry name" value="PTHR10953"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00899">
        <property type="entry name" value="ThiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69572">
        <property type="entry name" value="SSF69572"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Rhodanese" evidence="4">
        <location>
            <begin position="307"/>
            <end position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="402" mass="42916" checksum="0A6C5ED1490771D7" modified="2016-01-20" version="1">MSFPALVEPAAELTIDEVRRYSRHLIIPDVAMDGQKRLKNAKVLVIGAGGLGSPALLYLAAAGVGTLGIAEFDEVDESNLQRQVIHGMSDLGKSKGLSAKESILEINPLVNVVLHEERLDNDNVFDVFKGYDLIVDGTDNFATRYMVNDAAYFLGIPYVWGSIYRFDGQASVFAPTMADDAPCYRCLYPEPPPPGMVPSCAEGGVLGVLCASIGSIQVNEAIKLLIGAGEPAIGKLVIYDALELEWRKLKVRKDPNCALCGENPTVTGLIDYETFCGAISEEAADAAVDATISVTQLASMIKEKEEGSRDFVLIDVREPAEVEINHIPGAVLIPKGDFLNGTALSQLPPVDSGKQVVLHCKSGVRSAECLAIVKGAGYDDAVHVGGGVVAWVNQIDPSQPSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCI1</accession>
    <name>A0A0Q8VCI1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04975</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894261.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54820">
        <property type="protein sequence ID" value="KRC54820"/>
        <property type="gene ID" value="ASE19_04975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1751077at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="43"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="78"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="188" mass="19324" checksum="1854CC506DECA279" modified="2016-01-20" version="1">MTASSTPASGARTGSLGTMPRAGQSRSGIAPLKNDNAALLQVVLFWVGAILLPLGLVVIVLGWYGAANTPYQYDQLSYLVSGGLLGLGLTFCGGFLYFGAWLARIAADGRESSKRLADTLLLLAEVSATGATTDAQGVDLGAIPVVAGGGTTMHRRDCALIAHRDDLAPVGEANAHLTACRVCRPGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCJ3</accession>
    <name>A0A0Q8VCJ3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Transcriptional regulator WhiB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">whiB</name>
        <name evidence="13" type="ORF">ASE19_04535</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Acts as a transcriptional regulator. Probably redox-responsive. The apo- but not holo-form probably binds DNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="11">Binds 1 [4Fe-4S] cluster per subunit. Following nitrosylation of the [4Fe-4S] cluster binds 1 [4Fe-8(NO)] cluster per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="11">The Fe-S cluster can be nitrosylated by nitric oxide (NO).</text>
    </comment>
    <comment type="PTM">
        <text evidence="11">Upon Fe-S cluster removal intramolecular disulfide bonds are formed.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the WhiB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894331.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54751">
        <property type="protein sequence ID" value="KRC54751"/>
        <property type="gene ID" value="ASE19_04535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1974660at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035731">
        <property type="term" value="F:dinitrosyl-iron complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01479">
        <property type="entry name" value="WhiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034768">
        <property type="entry name" value="4FE4S_WBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003482">
        <property type="entry name" value="Whib"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38839">
        <property type="entry name" value="PTHR38839"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02467">
        <property type="entry name" value="Whib"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51674">
        <property type="entry name" value="4FE4S_WBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 11" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 11" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8 11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 11" id="KW-0408">Iron</keyword>
    <keyword evidence="6 11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 11" id="KW-0804">Transcription</keyword>
    <keyword evidence="7 11" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="4Fe-4S Wbl-type" evidence="12">
        <location>
            <begin position="15"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51674"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC54751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="91" mass="9981" checksum="2DD7A732EDFFB21C" modified="2016-01-20" version="1">MTTSVLEPTLDELLPCRLNDAELWFAESPSDVESAKALCQACPVQEMCLSGALDRREPWGVWGGELFLAGVVIPRKRPRGRPRKDATVTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCR7</accession>
    <name>A0A0Q8VCR7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06135</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894428.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55018">
        <property type="protein sequence ID" value="KRC55018"/>
        <property type="gene ID" value="ASE19_06135"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1990681at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="73"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="95" mass="10652" checksum="3C1C114E7F2492CE" modified="2016-01-20" version="1">MRGIFFDEDQARSAAETLVRGGYAAEVVRERLAGEDDDEDHPWAVVTDAPEIQLDMLVEQYDGWLDYEDEEPAAPPLVLPLPDQPKRIKRPSDGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCV4</accession>
    <name>A0A0Q8VCV4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Luciferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06460</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">To bacterial alkanal monooxygenase alpha and beta chains.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894477.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55070">
        <property type="protein sequence ID" value="KRC55070"/>
        <property type="gene ID" value="ASE19_06460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1003376at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019949">
        <property type="entry name" value="Luciferase_OxRdatse_group-1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03558">
        <property type="entry name" value="oxido_grp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="2">
        <location>
            <begin position="20"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="354" mass="37612" checksum="581A97B155992EB6" modified="2016-01-20" version="1">MPSSPADDLALSVLDLVPVRSDQGTGDAIAASVELARTADRLGYRRFWVAEHHNMPAVAATNPPVLIGLFAGATERIRVGSGGVMLPNHAPLVVAEQFALLEAAFPGRIDLGIGRAPGTDPVTSWALRHGAGGVDDEAVSHFPEYVDNVLAMMEPAGVGLALRGGQHVLRATPVARSVPQIWLLGSSDYSARLAAAKGMPYVFAHHFSGSGTAEALELYRTTFQPSPELDAPRTFLTVNASVADTAEEAQRRALPQLLQMLALRTGQPLVAQRTVEDAETIVDAGLPEAHRSVIEAMRRRWVIGDAATARTELRSLAASYGVDEVMVNPVGGAFRGTDPRTSPARVRTLELLAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCX3</accession>
    <name>A0A0Q8VCX3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05670</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894140.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54939">
        <property type="protein sequence ID" value="KRC54939"/>
        <property type="gene ID" value="ASE19_05670"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="69" mass="7859" checksum="17275D0F50062205" modified="2016-01-20" version="1">MSPFPLLQSVQAWADQTQQQVQQRARRNAMLALTECTQRRAEREDVEAFFAERAAEPAVTRDTTVSLHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD02</accession>
    <name>A0A0Q8VD02_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4350 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06605</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894500.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55098">
        <property type="protein sequence ID" value="KRC55098"/>
        <property type="gene ID" value="ASE19_06605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1939201at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025646">
        <property type="entry name" value="DUF4350"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14258">
        <property type="entry name" value="DUF4350"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359923" description="DUF4350 domain-containing protein" evidence="1">
        <location>
            <begin position="31"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4350" evidence="2">
        <location>
            <begin position="41"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="380" mass="40823" checksum="2FE25F06DF662AD5" modified="2016-01-20" version="1">MSRTPSRTGWLLVLGVVAALVVAVWTTAGSEEYPTTLDPRNPGPEGAQALAEVLDGQGVDVTIVRSADDLEEAEVDGGTTVLVTSTDDLSPGTLDRLRRHARPGRLVLVEPSYRVVQEVDSDLGALTVYPDELDARCEGGEGPAGIDVDGLRVAADRMTVYRADDRTLDGARCFGRDDGAVLVESRTADIVLFGAGEALSNDQVLRGDNAAVGLRLAGAGRRLVWYVPDPADATSDEAVALSSLIPRWIEPGLWLALLAGLGLLLWRVRRLGPLSTEPLPVVVRAVETARSRGRMYRRSGDHGHAATALRRAARTDLAARLGLDRRAEVAEVVEVVAAHTDRPVERVAALLDDTIPPTSDQDLVRLAQELARLRREVRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD30</accession>
    <name>A0A0Q8VD30_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06240</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55036">
        <property type="protein sequence ID" value="KRC55036"/>
        <property type="gene ID" value="ASE19_06240"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008239">
        <property type="term" value="F:dipeptidyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000383">
        <property type="entry name" value="Xaa-Pro-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013736">
        <property type="entry name" value="Xaa-Pro_dipept_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02129">
        <property type="entry name" value="Peptidase_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08530">
        <property type="entry name" value="PepX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00939">
        <property type="entry name" value="PepX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359952" evidence="1">
        <location>
            <begin position="34"/>
            <end position="606"/>
        </location>
    </feature>
    <feature type="domain" description="PepX_C" evidence="2">
        <location>
            <begin position="372"/>
            <end position="603"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="606" mass="62122" checksum="95D2D1B672C3F28B" modified="2016-01-20" version="1">MTGRSPRVKHVTTALAALLASAGLLVPASPAHAADPFTTTTLHFKVAVGPTGSTACDVVGDVYVPAAASSASRVPAVLTTNGFGGSKDDQATFARTLASRGYVVLSYSGLGFGGSSCVITLDDPDYDGKAASQLVSYLGGRGGIAFLDKEHTQPAPVLDVVQKDAHDHKGVARTDDPRVGTFGGSYGGGFQFAVASVDARVDAIVPLITWNDLSYSLDPNNTAQATGVSSATPGAAKLLWALGFSVTGVLGELQNQQVPPDALPCPNFAAFVCPALVTAGATGFLLPSQVASLRHASVASYVGRVRVPTLLIQGERDTLFNLNEATATYRALQAQGTETKMIWMLGGHSGDGAPGEVTWADPASGYVSGRVLGWFERYLRGGTGSTGPEFAYFRDWVSYAGNAAPAYATSTSFPVGVRRTWRLSGKGDLVTGLTPTAAGSQSLVTTAAGLPTRLDEMDVFGSYFGPVGSLVTDLPGTAVGWSTPALTAPVRVAGSPTVTLRVGAPSAALTQATCPAGQLVLFVKVADVAPDGTARLINGLEAPVRIPDVTKAFTVQVPAIVHEFAAGHRIRLVVAGGSVNYRGGLAPTPVTIASGSAQTLSLPVVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD47</accession>
    <name>A0A0Q8VD47_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cytochrome O ubiquinol oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_10440</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the DedA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895171.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53619">
        <property type="protein sequence ID" value="KRC53619"/>
        <property type="gene ID" value="ASE19_10440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1928533at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032818">
        <property type="entry name" value="DedA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032816">
        <property type="entry name" value="SNARE_assoc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30353">
        <property type="entry name" value="PTHR30353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09335">
        <property type="entry name" value="SNARE_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="46"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="73"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="157"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="192"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU367016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="227" mass="25268" checksum="5EF9B0AA7E4B9CE4" modified="2016-01-20" version="1">MLLGIKWLDPEWLQHEYGTTFIWLALAMVFVECGLFFPFLPGDTLLFALGLFIAGSNTTGYSVVGISNEPVELLIAIVLLIVAAFAGNVAGYEIGRKVGPALYEREGRILKKKYFDNTSAFFDKHGNKALVIGRFVPFVRTYITVVAGVTMMERRRFFTWSAVGAVLWVVSITLLGYFLGAAIPALGENIDYVTLAILAFSAIPLAWEWWRHKRPGAKGKKALVEER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD93</accession>
    <name>A0A0Q8VD93_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">30S ribosomal protein S13</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsM</name>
        <name evidence="8" type="ORF">ASE19_06445</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uS13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894476.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55067">
        <property type="protein sequence ID" value="KRC55067"/>
        <property type="gene ID" value="ASE19_06445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1772647at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01315">
        <property type="entry name" value="Ribosomal_S13_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027437">
        <property type="entry name" value="30s_Rbsml_prot_S13_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001892">
        <property type="entry name" value="Ribosomal_S13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010979">
        <property type="entry name" value="Ribosomal_S13-like_H2TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019980">
        <property type="entry name" value="Ribosomal_S13_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018269">
        <property type="entry name" value="Ribosomal_S13_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10871:SF1">
        <property type="entry name" value="PTHR10871:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00416">
        <property type="entry name" value="Ribosomal_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002134">
        <property type="entry name" value="Ribosomal_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46946">
        <property type="entry name" value="SSF46946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03631">
        <property type="entry name" value="uS13_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00646">
        <property type="entry name" value="RIBOSOMAL_S13_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50159">
        <property type="entry name" value="RIBOSOMAL_S13_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="5" id="KW-0820">tRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="93"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="105"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003830"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC55067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="125" mass="14236" checksum="E5362200FFA0F4D9" modified="2016-01-20" version="1">MARLVGVDLPRDKRIEIALTYIYGIGRTTAQQLLAETGVNPNLRVHELGDEELVKLRDQIEANNIKIEGDLRREVQADIRRKIEIGSYQGRRHRMGLPVRGQRTKTNARTRKGPKRTVAGKKKAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDL1</accession>
    <name>A0A0Q8VDL1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5 7">50S ribosomal protein L16</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplP</name>
        <name evidence="10" type="ORF">ASE19_06550</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 7">Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 7">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uL16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_038681126.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55087">
        <property type="protein sequence ID" value="KRC55087"/>
        <property type="gene ID" value="ASE19_06550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1786618at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01433">
        <property type="entry name" value="Ribosomal_L16_L10e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01342">
        <property type="entry name" value="Ribosomal_L16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016180">
        <property type="entry name" value="Ribosomal_L10e/L16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036920">
        <property type="entry name" value="Ribosomal_L10e/L16_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000114">
        <property type="entry name" value="Ribosomal_L16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020798">
        <property type="entry name" value="Ribosomal_L16_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12220">
        <property type="entry name" value="PTHR12220"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00252">
        <property type="entry name" value="Ribosomal_L16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00060">
        <property type="entry name" value="RIBOSOMALL16"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54686">
        <property type="entry name" value="SSF54686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01164">
        <property type="entry name" value="rplP_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00586">
        <property type="entry name" value="RIBOSOMAL_L16_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00701">
        <property type="entry name" value="RIBOSOMAL_L16_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L16" evidence="9">
        <location>
            <begin position="4"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="8">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC55087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="139" mass="15842" checksum="3C9E7B7E7BB404BD" modified="2016-01-20" version="1">MLMPRRVKHRKQHHPKRRGAAKGGTSLAFGDFGIQAVEGHYVTNRQIESARIAMTRHIKRGGKVWINIYPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVMFELSGVPEDVAREAMRRAIHKLPMKCRFITREAGEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDW2</accession>
    <name>A0A0Q8VDW2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Saccharopine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07075</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895275.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53843">
        <property type="protein sequence ID" value="KRC53843"/>
        <property type="gene ID" value="ASE19_07075"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1006830at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005097">
        <property type="entry name" value="Sacchrp_dh_NADP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03435">
        <property type="entry name" value="Sacchrp_dh_NADP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sacchrp_dh_NADP" evidence="2">
        <location>
            <begin position="10"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="205"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="41902" checksum="484C89C9EDD3EC99" modified="2016-01-20" version="1">MADSSRPYDVVLFGATGFTGGLTADYLAAHGGPDLRWAIAGRNEQKLEAVRSRLAGTNPALADLPLLVADAEDTDALAEVVRTTKVVATTVGPYIEYGGPLVAACAVAGTDYVDLTGEPEFVDRTYVEHNAAAEGSGARLVHSCGFDSIPHDLGAYFTIRELARELGGEIDGPVTMRGVVRSNATFSGGTFHSALTAFSRARQMKEASSARRKMEPRPEGRRSRASVGKPRRDSELGYWLLPLPTIDPFVVARSGAALPAYGPAFTYSHYAGTKTIRYAAGGALGVTGLTLASQVPPVRNALLKRVPQGQGPSEGRRERSWFTVDFVAESGSAKVHTRVSGGDPGYTETAKMLAESAICLALDENPNVSGQVTTATAMGEALLARLQRAGISFELR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE75</accession>
    <name>A0A0Q8VE75_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_11085</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894874.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52941">
        <property type="protein sequence ID" value="KRC52941"/>
        <property type="gene ID" value="ASE19_11085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="626204at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="46"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="104"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="150"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="177"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="223"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="260"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="287"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="312"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="345"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="376"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="223"/>
            <end position="418"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="418" mass="41879" checksum="FA7466B601519D4F" modified="2016-01-20" version="1">MTDHSPSLLRATGPTYFPIALVARLPYAMMVVGVLTLVVAGRDSLAFGGLSSAMVGVGAACFGPLLGAAADRFGQRPVLLVAGVASTAALGLMAWVVYSPLPGAAVLAVAFVVGASAPQIAPMSRSRLVEIIAARIAPARRERTFDATMAYESAADEMVFIVGPFLVGLLGTAVDPWAPVAAAAVVTLVFVSAFAVHPTSVDVRSTRGTAVETAPASDLARPALVVVVAGILGVGLFFGSMLTSLTAFMGEHGNPEAAGLVYGVMGIGSAAFALGVALLPSRFTLRARWLVFAGVLVAGTAVLPFVGSVAQMALLLLVVGTGVGPTMVTQYSLGALRSPAGRSATVMTMLGSAVIVGQATASVVTGTLADRFGTDAALVVPLVAAVLVLAAGVANWLLTPTPAGGSTAVADDRGVLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEU4</accession>
    <name>A0A0Q8VEU4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Phosphoribosylformylglycinamidine synthase subunit PurL</fullName>
            <shortName evidence="5">FGAM synthase</shortName>
            <ecNumber evidence="5">6.3.5.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Formylglycinamide ribonucleotide amidotransferase subunit II</fullName>
            <shortName evidence="5">FGAR amidotransferase II</shortName>
            <shortName evidence="5">FGAR-AT II</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Glutamine amidotransferase PurL</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Phosphoribosylformylglycinamidine synthase subunit II</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">purL</name>
        <name evidence="9" type="ORF">ASE19_07800</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + H2O + L-glutamine + N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamide = 2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine + ADP + H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17129"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:147286"/>
            <dbReference type="ChEBI" id="CHEBI:147287"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer. Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the FGAMS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.3" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895633.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54201">
        <property type="protein sequence ID" value="KRC54201"/>
        <property type="gene ID" value="ASE19_07800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="26038at2"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004642">
        <property type="term" value="F:phosphoribosylformylglycinamidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00420">
        <property type="entry name" value="PurL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010074">
        <property type="entry name" value="PRibForGlyAmidine_synth_PurL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041609">
        <property type="entry name" value="PurL_linker"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43555">
        <property type="entry name" value="PTHR43555"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18072">
        <property type="entry name" value="FGAR-AT_linker"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001587">
        <property type="entry name" value="FGAM_synthase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="SSF55326"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="SSF56042"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01736">
        <property type="entry name" value="FGAM_synth_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 5" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FGAR-AT_linker" evidence="8">
        <location>
            <begin position="23"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS" evidence="6">
        <location>
            <begin position="100"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS_C" evidence="7">
        <location>
            <begin position="215"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS" evidence="6">
        <location>
            <begin position="472"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS_C" evidence="7">
        <location>
            <begin position="593"/>
            <end position="719"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="107"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="326"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="254"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="282"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="514"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="551"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="552"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="554"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF18072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="749" mass="78548" checksum="6712989D63A26452" modified="2016-01-20" version="1">MRSTLDTVAVAAGDPDREQPWSELGLKADEYARIREILGRRPTGAELAMYSVMWSEHCSYKSSKVHLRQFGEIPQETPIGPMLAGIGENAGVIDIGQGYAVSFKVESHNHPSYVEPYQGAATGVGGIVRDIIAMGARPVAVVDPLRFGPLDADDTHRVLPGIVAGVGGYGNCLGLPNVGGEAVFDATYLGNPLVNAGCIGVLRHEDLHLAKASGVGNQVVLYGARTGGDGIGGVSVLASETFDADGPAKRPSVQVGDPFMEKLLIECTLELFKAGVVVGIQDLGGAGLSCATSELASAGDGGMRCELDRVPLRDSTLSPEEILMSESQERMMAVVEPADIAAFLAICAKWDVEAIVIGEVTDTGRLEITWHGETVVDVPPRTVAHDGPVYERPYARPAWQDALQADGAEKLARPTTGDELRATLLQLVASPNLCDKSWITDQYDRYVQGNTVLAQPADSGMVRVDEETHLGVSISTDCNGRFAKLDPYAGAQLALAESYRNVATGGALPLAVSDCLNFGSPEDPDVMWQFAEACRGLKDGCLELGIPVTGGNVSLYNQTGETAILPTPVVAVLGVIEDVRRRTPSSFQAADERIVLLGTSREELSGSEWAHVVHGHLGGLPPQVDLGAERDLARTLQDLVGLATSAHDLSDGGLAQALAEASMVSGIGARVSLEGDAFVGLFAESAARALVTVAADGLDELKARAAAHGVPVTELGTTGGDVLAVEGQFEVALDELRTAWSATLPAALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF89</accession>
    <name>A0A0Q8VF89_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09580</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52674">
        <property type="protein sequence ID" value="KRC52674"/>
        <property type="gene ID" value="ASE19_09580"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="98" mass="9987" checksum="9BE0261AD845CD20" modified="2016-01-20" version="1">MPHLEQVGEVDPLGLPAHQGLHLGGRRDVGAVAASYLQHADVGEGLDGLTHGVAADAERRGEDRLGRDAVADAPLAGGEQRAHAVDRLVDQGGGGSRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFJ2</accession>
    <name>A0A0Q8VFJ2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Lactamase_B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13410</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895806.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53344">
        <property type="protein sequence ID" value="KRC53344"/>
        <property type="gene ID" value="ASE19_13410"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="20"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="256" mass="27751" checksum="7D083FA79EB478D4" modified="2016-01-20" version="1">MRIHHLNCATMRPALAPPMVAHVLLLERADGLVLVDTGFGTGDLADKGRLGRPFLLAVRPALDAGETAVAQVRALGHDPADVTDIVLTHLDLDHAGGIGDFPNARIHVHATELGAAKHPSMREKARYVQGQWAHHPLWVEHREGGDDWFGFASVKALADDVLVVPLHGHTRGHSGIAVRGDDGRWLFHAGDAFFHGDQLADPPRCPASLAAFQRLMAVDNRARVANLERLQELAGAHGDEVTIFCAHDKGQYDALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGI2</accession>
    <name>A0A0Q8VGI2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MDMPI_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14770</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896918.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53584">
        <property type="protein sequence ID" value="KRC53584"/>
        <property type="gene ID" value="ASE19_14770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2055578at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017517">
        <property type="entry name" value="CHP03083_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017520">
        <property type="entry name" value="CHP03086"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024344">
        <property type="entry name" value="MDMPI_metal-binding"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11716">
        <property type="entry name" value="MDMPI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03083">
        <property type="entry name" value="TIGR03083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03086">
        <property type="entry name" value="TIGR03086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MDMPI_N" evidence="1">
        <location>
            <begin position="18"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="192" mass="19629" checksum="422D2D9E2CD55F0C" modified="2016-01-20" version="1">MSAEPAPAGLVAGLDLLQRALDYTRAALDTITCADVDRPTPCAGWSLADLLAHMEDALDAFAEAAGGAVGLSSAAPSPLEQRVQRLQLKACGLLTAWMSATSPVVDVAGHPLPVDAVARIAALEITVHGWDVGRTTGRGGPIPERLAAELLPSALQVALSDDPRFGLPVPVPVDAPAGVHVLALLGRTATNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGK8</accession>
    <name>A0A0Q8VGK8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GntR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09590</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895152.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53600">
        <property type="protein sequence ID" value="KRC53600"/>
        <property type="gene ID" value="ASE19_09590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1320028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="2">
        <location>
            <begin position="14"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="445" mass="48124" checksum="3DBA4B52764B0B58" modified="2016-01-20" version="1">MPMLPVRLDRADPRPLGSQLADQIRALVLSGALAGGDRMPASRRLATDLGVSRSVVEQAFDQLLAEGWIEARQGAGTWVAGGRSGARSRPARRRTPVVERALVMLDAGTPWIDPRHEAVWRRAWREVSTATPPRGYDDPRGLPELRALVAERLGRTRGLAVDGDAVRITSGTGAGLRHLLAVLPRDPVAVEDPGYRAAVAMVLESGRSVRDLPALEPVADLAGCAAAYVTPAHQHPLGRVMPAADRLTLLATARRDGALVVEDDYDSEFRYDVAPVPALASLDRDRVAYLGTASKSILPSLRLGWTVVPDRVLDRFDAHRALTHDAPPWPVQRALVTLLRDGYVDAVVRSARRTYAERAPRVVAALEPYAELAGPVAGMYSTWLLPHARAVRARAAAEEAGFRVNLLRDYCRTARLSGLVVGFGGPTDDELDLALDALVSGLRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGS0</accession>
    <name>A0A0Q8VGS0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_02200</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892679.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56661">
        <property type="protein sequence ID" value="KRC56661"/>
        <property type="gene ID" value="ASE19_02200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="643917at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="29"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="72"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="149"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="174"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="264"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="296"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="32"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="353"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="386"/>
            <end position="393"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC56661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="605" mass="64295" checksum="3E41298FA49C69C5" modified="2016-01-20" version="1">MATAGSTGSTGTTSAGFGVLWVAIKREPWIFALSTIGSVLFGALTVADAWVLGWSTDHVVLPAFRDGEIGSGLLWAVLGLFVGVAILRAVGIVARRLGAGVMQYRMQAHSRRAVTRQYLRLPMEWHQRHPTGELLSNANSDVEAAWGPIAPLPMAVGTVAMMVIAVVQMLLTDLALATVGLLVFPIVIGTNVVYQRLAQGWATRAQQLRAELSEIAHESFDGALVVKTLGREPEETDRFRAKAVELREANIRVGRIRAAFDPTLAALPNLAVLVVLVLGVHRVVSGATVAGDVVTVTYLLTVVAFPIRSIGWLLGDFPRSVVGYRRVAAVLRASGAMEYGDQELPARAGGARLEVAHAAFGYTPERPLLQDLSFDVEPGRTVALVGATASGKSTLTTLLARLVDVDAGAIRIDGTDVRELRRGGLAQTLSVVPQTAFLFDDTVRGNVTLGLDVPDEEVWAALRTAQADGFVAALPDGLDARLGERGTTLSGGQRQRLALARALVRRPRLLVLDDATSAVDPEVEARILGALGGVSRLAGARTSTTGMTLVVVAYRKATIGLADEVLYLVDGAIADRGPHAELVARNADYARLVNAYETEDEEVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH14</accession>
    <name>A0A0Q8VH14_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12885</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895712.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53250">
        <property type="protein sequence ID" value="KRC53250"/>
        <property type="gene ID" value="ASE19_12885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1745184at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="24"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="190" mass="20854" checksum="00161EA6DC069387" modified="2016-01-20" version="1">MAAREQLLSTALRLLGEGRPEAVSINLVAKEAGLSWGSVQNLFGDSDGFWSAVADQVAEVGPELWATPQSPTIAGRVAEVTELYLSVLDSPHAVSIETMRWALPRPLDLLAETHPRTAASIRRLDELASEAFVHFFDGVEGLDEERRIAMSEVLPAMLRSLRNEKLLGTHVDLDRAHRAIVTMLTLYLEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHI5</accession>
    <name>A0A0Q8VHI5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4143 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895289.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53857">
        <property type="protein sequence ID" value="KRC53857"/>
        <property type="gene ID" value="ASE19_07155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025420">
        <property type="entry name" value="DUF4143"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13635">
        <property type="entry name" value="DUF4143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4143" evidence="1">
        <location>
            <begin position="68"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="258" mass="27983" checksum="A955190112E0A0FD" modified="2016-01-20" version="1">MAADFVARLGSRGTVPGEVRTSWGIQEYVGALARPVADEELRRIARRARAVRRTDAGRVVALLGALADPPLGELNRARLGAIAGIPPTTLQPYVDVLVEIGVVRLLPGCRAAPAKRAIGRPQVVFDDPALARHLAGHTPDQLVQFAGRWRLAPLLRTLVAAELLRQQATSVVEHRVSYLRERNGLEVGLVVELPDESLYGIEVLTAAGLRPHQFARLEALARRAGGRFRGGVVLNTASVGHRYGPRLWGLPIRSVWDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHP7</accession>
    <name>A0A0Q8VHP7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07670</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895380.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53949">
        <property type="protein sequence ID" value="KRC53949"/>
        <property type="gene ID" value="ASE19_07670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1538300at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="174" mass="18937" checksum="515EFDE5301D2E71" modified="2016-01-20" version="1">MTALVLPDVARWESWVAMVEDFGGPAEMHGSGHWFLDGDPVPTRAGCEAFVTMTEVTAPGDLDGLRVPSTYFWIAAGDGGPHDELVGFLNLRHLLNDFLREEGGHIGYAVKPSARRRGHASEALRLALVAARDLGIAKVLVTCDEDNEPSARTIEANGGVQEDVRNGKRRYWIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHW8</accession>
    <name>A0A0Q8VHW8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02710</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892769.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56751">
        <property type="protein sequence ID" value="KRC56751"/>
        <property type="gene ID" value="ASE19_02710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1514411at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360055" evidence="1">
        <location>
            <begin position="22"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="399" mass="41050" checksum="50E3B838DBDCED35" modified="2016-01-20" version="1">MTRRVLLTALLTAGLLTGACSPDEYVAPPPTQRTEVADPAVAAETVAALQDDIDDPGALARLGADDDAAQLLAAVSRNATGLRLSDVTLRYITETGRTSGADAWDGLVAVTWRVEGFDEASARAEVPVSFADGGSRIAGIGADGARLPLWLTGPLVVRRVPGAVVAAAEPAGEIDRYARLARRAVAATRPLLGGRAGVVVEVPADAAAVDRTLGVQPGQYSAIAAVTAPVDGSQAPGSPVHVFVNRTVFDALDPTAAQVVMTHEAVHAVTGAALVQGAPLWLVEGFADYVALRDVDLPVSRTAAQVIKQVKRGGVPAALPADTDFDPTATHLGAVYEAAWQVCVVIVEHGGEGALVALYRRVLGGADVATALRAEAGWTEAELTAAWQARLALLAGVQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHY0</accession>
    <name>A0A0Q8VHY0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphoribosylamine--glycine ligase</fullName>
            <ecNumber evidence="6">6.3.4.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">GARS</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Glycinamide ribonucleotide synthetase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Phosphoribosylglycinamide synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">purD</name>
        <name evidence="9" type="ORF">ASE19_10350</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>5-phospho-beta-D-ribosylamine + ATP + glycine = ADP + H(+) + N(1)-(5-phospho-beta-D-ribosyl)glycinamide + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17453"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:58681"/>
            <dbReference type="ChEBI" id="CHEBI:143788"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 6">Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the GARS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.13" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894740.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52807">
        <property type="protein sequence ID" value="KRC52807"/>
        <property type="gene ID" value="ASE19_10350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="932854at2"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004637">
        <property type="term" value="F:phosphoribosylamine-glycine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009113">
        <property type="term" value="P:purine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00138">
        <property type="entry name" value="GARS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020561">
        <property type="entry name" value="PRibGlycinamid_synth_ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000115">
        <property type="entry name" value="PRibGlycinamide_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020560">
        <property type="entry name" value="PRibGlycinamide_synth_C-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037123">
        <property type="entry name" value="PRibGlycinamide_synth_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020562">
        <property type="entry name" value="PRibGlycinamide_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43472">
        <property type="entry name" value="PTHR43472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01071">
        <property type="entry name" value="GARS_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02843">
        <property type="entry name" value="GARS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02844">
        <property type="entry name" value="GARS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01210">
        <property type="entry name" value="GARS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00877">
        <property type="entry name" value="purD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 6 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 6" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="8">
        <location>
            <begin position="107"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC52807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="423" mass="42783" checksum="31D84F1AD3C69956" modified="2016-01-20" version="1">MKTLVIGTGGREHALALALSRDPSVTEVHAAPGNPGIGAFATLHEVDLMDGAAVAALATTVGADLVVVGPEAPLVAGVADAVRSAGTPVFGPSRAAAQLEGSKAFSKEVMAAAGVPTAGSRTCRTAEEVAAALDEFGAPYVVKDDALAAGKGVVVTRDRAEAEAHAAACGTVVIEEFLDGPEVSLFAVCDGTTAYPLQPAQDFKRIFDGGRGPNTGGMGSYSPLAWAPADLAATVMEQVVQPTLDEMVRRGAPFVGCLYVGLALTATGPRVIEFNCRFGDPDIQPVLAVLESPLGELLAAAAGGRLAEVEAPRFRDAASVTVVLASAGYPESSSKGDVITGVGAANGVNDVDVIHAGTALVDDQLVTAGGRVLAVRAVGYDVADARARAYAAADLITFEGLQRRSDIAAEPLGVVEGASLTED</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI68</accession>
    <name>A0A0Q8VI68_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_03875</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892967.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56950">
        <property type="protein sequence ID" value="KRC56950"/>
        <property type="gene ID" value="ASE19_03875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="149255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="198"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="242"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="288"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="322"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="378"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="523"/>
            <end position="540"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="547"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="588"/>
            <end position="612"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="633"/>
            <end position="652"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="664"/>
            <end position="686"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="7">
        <location>
            <begin position="217"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="7">
        <location>
            <begin position="545"/>
            <end position="688"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC56950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="712" mass="74355" checksum="2629E63E70ACD410" modified="2016-01-20" version="1">MAQHSLEPSPHAGPLGRLGLWVLSHRRVVGIGWIVVVVGLGAFAPAVEKNLSGAGWQADGSESVAVRDLAQDHFGGNASHAIQVVVHRTDGSLDSGDGPRVLAEVTRILEGEPRLGEVVAPQPGTSLSPDGRTAVVLAGAGVDTNEMVRVASDLKEDLQALSTDTVAVNPTGSSLLWSDFNEANLEAMLTSEMYSWPVTLAILVLAFGALVAAGLPLMLTLAGLVASAGSLVLLNELVPVSIWAMNFAMMFALALGIDYALFLVVRYRAARMGRHGSARQAIAETMDTAGKAVLLSGATVLVSLSAVMLVPSPSFRSMAGGIMISVAFVLAATLTLLPLVLFKLDDRINRLALPWVKAGEHRSPVFARWGEHLWRHPAAWGIGSTVVLLLLAAPIIGLKTGMPSIKVLPEDASARIGYAQVQDAFGEGAPGTLQVVMKDADAPAAAAVLTSDPGIAAVTRAVPAGDDSGLALIQATPTVNPSDPALPETVDRLRAELPSSALVGGAAVENIDLTDQLDRSTPLVIGVVMGLGFLLLLVALQAPLIALLGTLASLLSTAAAFGVARLVFQEGHGAGLLGFEPQGFLDAWAPVFFFAMIFAIAMDYTVFLLASAKEHWEKSGDPREAMVGAVAHSGRVIFAAGGVMVAVFFTFALSGPLPPKEMGVILGVAVLLDAFLVRLVLLPVLLRVSGRAAWASPAWLRRILPRITFAHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIN2</accession>
    <name>A0A0Q8VIN2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5 7">50S ribosomal protein L15</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplO</name>
        <name evidence="10" type="ORF">ASE19_06490</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Binds to the 23S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uL15 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894482.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55075">
        <property type="protein sequence ID" value="KRC55075"/>
        <property type="gene ID" value="ASE19_06490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1874945at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01341">
        <property type="entry name" value="Ribosomal_L15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036227">
        <property type="entry name" value="L18e/L15P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030878">
        <property type="entry name" value="Ribosomal_L15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005749">
        <property type="entry name" value="Ribosomal_L15_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001196">
        <property type="entry name" value="Ribosomal_L15_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021131">
        <property type="entry name" value="Ribosomal_L18e/L15P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12934">
        <property type="entry name" value="PTHR12934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00828">
        <property type="entry name" value="Ribosomal_L27A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52080">
        <property type="entry name" value="SSF52080"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01071">
        <property type="entry name" value="rplO_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00475">
        <property type="entry name" value="RIBOSOMAL_L15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L18e/L15P" evidence="9">
        <location>
            <begin position="28"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003888"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC55075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="146" mass="15332" checksum="9925D678F012E042" modified="2016-01-20" version="1">MTLKLHHLRPAPGAKTAKTRVGRGEGSKGKTAGRGTKGTKARYQVPVAFEGGQMPLHMRLPKLKGFKNPFKVTFQVVNLDRISALFPEGGDVTPETLVAKGAVRKGEPVKVLGQGDLTVKVSVSAQAFSASAKEKIEGAGGTVTVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJM1</accession>
    <name>A0A0Q8VJM1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HxlR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13270</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895781.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53319">
        <property type="protein sequence ID" value="KRC53319"/>
        <property type="gene ID" value="ASE19_13270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1919329at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="12"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="18209" checksum="AB32DC276D337DE2" modified="2016-01-20" version="1">MPLRSDWSTEYCPIRRSLDVLGDPWVLLIVRDVLHGTGRFEQLRDNLGISEAVLSRRLRAMREAGLLDVVDYERGGRTRQRYVATPAAADLLPLLHHLAIWGEKHTVEPDGGAHMALVHQPCGRETTDGERCSSCGEPLRPEDMTWVKPWLGTEHQLRPAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJM4</accession>
    <name>A0A0Q8VJM4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_24115</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894041.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57407">
        <property type="protein sequence ID" value="KRC57407"/>
        <property type="gene ID" value="ASE19_24115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="24"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="228" mass="25234" checksum="4D269E29370137E3" modified="2016-01-20" version="1">MVDVVKWVDSTVRRRNAKEALESDARRAQVVQAAIDAIEEGGSAVGMGQIAERAGIPRPNVYRHFASKEQLDAEVARYAATELIRRVRPHFARAGTPAEIVGGLIAPCVAWAAEHPHLFRFLAAQQQTKALHRARLGRTRLLSEIVDAARAYLRETPLSADPPEGVLVGVMGMVDASIIWWFDHHDESQEQLVERLTRQVTAVLSDTLAQYGLVVPDDMVFDPEAKKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJS7</accession>
    <name>A0A0Q8VJS7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Tyrosine--tRNA ligase</fullName>
            <ecNumber evidence="7">6.1.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Tyrosyl-tRNA synthetase</fullName>
            <shortName evidence="7">TyrRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tyrS</name>
        <name evidence="10" type="ORF">ASE19_23730</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + L-tyrosine + tRNA(Tyr) = AMP + diphosphate + H(+) + L-tyrosyl-tRNA(Tyr)</text>
            <dbReference type="Rhea" id="RHEA:10220"/>
            <dbReference type="Rhea" id="RHEA-COMP:9706"/>
            <dbReference type="Rhea" id="RHEA-COMP:9707"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78536"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.1"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.1" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893974.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57768">
        <property type="protein sequence ID" value="KRC57768"/>
        <property type="gene ID" value="ASE19_23730"/>
    </dbReference>
    <dbReference type="OrthoDB" id="402899at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004831">
        <property type="term" value="F:tyrosine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006437">
        <property type="term" value="P:tyrosyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00805">
        <property type="entry name" value="TyrRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02006">
        <property type="entry name" value="Tyr_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002305">
        <property type="entry name" value="aa-tRNA-synth_Ic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002307">
        <property type="entry name" value="Tyr-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024088">
        <property type="entry name" value="Tyr-tRNA-ligase_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024107">
        <property type="entry name" value="Tyr-tRNA-ligase_bac_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11766">
        <property type="entry name" value="PTHR11766"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00579">
        <property type="entry name" value="tRNA-synt_1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01040">
        <property type="entry name" value="TRNASYNTHTYR"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00234">
        <property type="entry name" value="tyrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 8" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="9">
        <location>
            <begin position="361"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="7">
        <location>
            <begin position="231"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="234"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC57768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="423" mass="46015" checksum="12D523BB4CDFEA9F" modified="2016-01-20" version="1">MSVDPTLLDDLAWRGLLAESTDRDALRTALTEGSVRYYVGFDPTAPSLHMGNLVQIVTAMRLQRAGHTPYALVGGATGMIGDPRDSGERTLNSLDTVQEWTARVRGQIEPFLSFEGENAATMVNNHDWTEGLSVIDFLRDIGKHFPVNRMLARETVKRRLESGISYTEFSYVLLQSMDFLTLHRTYGVTLQFGGSDQWGNLTGGVDLIRRAEGATAHAFATPLITKADGTKYGKTEGGALWLDPVLMPPYAFHQFWLNVEDEKVGELLRVFTFLSREDIEAIEARHAEKPFLREAQKVLADEVTTLVHGAQETENAKAAAQALFGTGDITALSGPTLEAALGEAGAVDVDGSAGIPDIVELLALTGLASSRSEARRTVSEGGAYVNNVRIDDPEHVPAAGDLIAAAWLVLRRGKKRFAGVRVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK10</accession>
    <name>A0A0Q8VK10_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribosomal RNA small subunit methyltransferase E</fullName>
            <ecNumber evidence="6">2.1.1.193</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_23395</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>S-adenosyl-L-methionine + uridine(1498) in 16S rRNA = H(+) + N(3)-methyluridine(1498) in 16S rRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42920"/>
            <dbReference type="Rhea" id="RHEA-COMP:10283"/>
            <dbReference type="Rhea" id="RHEA-COMP:10284"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74502"/>
            <dbReference type="EC" id="2.1.1.193"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the RNA methyltransferase RsmE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.193" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893913.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57707">
        <property type="protein sequence ID" value="KRC57707"/>
        <property type="gene ID" value="ASE19_23395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1490892at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006700">
        <property type="entry name" value="rRNA_ssu_MeTrfase-E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30027">
        <property type="entry name" value="PTHR30027"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04452">
        <property type="entry name" value="Methyltrans_RNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015601">
        <property type="entry name" value="MTase_slr0722"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00046">
        <property type="entry name" value="TIGR00046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6 7" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00025699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR015601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC57707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="247" mass="25643" checksum="BCA0DF8D4B503F7E" modified="2016-01-20" version="1">MTLPQHLVPSLDGIRAGDTVTVEGDEAHHAVVVRRLRVGEALLLTDGLGRLVTGEVGETTKRSFTVVAREVADLPEPQPRVTVVQALPKGDRGELAVEVLTEIGVATVVPWAAARSVAVWKGERAAKSLAKWQATAREAAKQARRAWHPSVAPLASTDGVVALIASADVAVVLHEDATEPISALALPPDGDLVVVVGPEGGLTDEEVARFVASGAVAVRLGSEVLRTSTAGVAAVAALLSRTPRWGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK56</accession>
    <name>A0A0Q8VK56_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thioredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07215</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54194">
        <property type="protein sequence ID" value="KRC54194"/>
        <property type="gene ID" value="ASE19_07215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1617952at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="1">
        <location>
            <begin position="8"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="16018" checksum="90A75EFE9563C887" modified="2016-01-20" version="1">MTGIVILLLAVFAAAGFGLYRRRVDGRFAPSAVDETPAPAVEDPSAWASVNAAVPGAELGEQATLVQFSSAFCAPCRTTRVVLADVADRHDGVAHLEIDAEEHLALVRQLDVRRTPTTLILDRSGREVTRAAGAPRREQVLAALPHLQES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKP6</accession>
    <name>A0A0Q8VKP6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_04830</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the glycosyl hydrolase 5 (cellulase A) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54800">
        <property type="protein sequence ID" value="KRC54800"/>
        <property type="gene ID" value="ASE19_04830"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901136">
        <property type="term" value="P:carbohydrate derivative catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041036">
        <property type="entry name" value="GH5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001547">
        <property type="entry name" value="Glyco_hydro_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00150">
        <property type="entry name" value="Cellulase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18564">
        <property type="entry name" value="Glyco_hydro_5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360121" evidence="4">
        <location>
            <begin position="22"/>
            <end position="483"/>
        </location>
    </feature>
    <feature type="domain" description="Cellulase" evidence="5">
        <location>
            <begin position="40"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_5_C" evidence="6">
        <location>
            <begin position="400"/>
            <end position="459"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU361153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF18564"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="483" mass="53642" checksum="513520417A7DC134" modified="2016-01-20" version="1">MVAAVLLAALGLTATAASASAAPTDDDTPQLRKQGRWLVDEQGRVVIVHGFNLVWKLDPYVPPATAEGFTAADADWLEQHGFNGVRLGTLWAGITPDAPGVGDPSYRTGWQRVMDLLADKGIWMQLDMHQDQFHETYGGEGVPDWALHRPLVLGLLPPVNLPFPMGYWTPENSLVFDEFWANRHRGIDHWASAWQVAAGWWRDQPYLMGYDLINEPWMGLEWLACFTGGCQNSYVKELQPAYEKVTRAIRAVDGENVVWWEPQQLAAGRPVPTYLEPMAGEQQLGYSWHNYCQDVFLESQGLPFGNVENCWKFSQERTTTALAQAARISAAPMMSEWGATDNLRAVEIDAAVADRNLMGWTHWAYKQWQDPTTADDAQGMFHDDSDLGSVKADKLRVLVRTYAQATAGTPLAMDFDATTGAFSYRYRSNAVDAPTEIFVSPLHYPHGYDVAVTGGSWAPGTDGRIEVRPDVPGQEVGVRISAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL45</accession>
    <name>A0A0Q8VL45_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_06790</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53799">
        <property type="protein sequence ID" value="KRC53799"/>
        <property type="gene ID" value="ASE19_06790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="4">
        <location>
            <begin position="20"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="3">
        <location>
            <begin position="189"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="339" mass="35073" checksum="32B49FE8AF057A9B" modified="2016-01-20" version="1">MMDETSAAVDSLIADLAKGAQEPPAGDLPAIWTSLEDLGLAGVGLAEDVGGSGGDLTDLIALAESVGRHVVSSPLLENGIARWALGEANVPAPPGVCTVSMLAPDVVLNLGGGTVDLFEVPWARHAAVLLVVSASGVHLVDLRRESVRIVPRVNEAGEERDDVTFNCDAAVVVASAPSVAAIRNRLALLWAAVLAGTIESAYGLTRDYVNGREQFGAPLVRIPAVAGLLATVKAELVQVEAGLQRAKDHALHRLDSAETTAAVAAARVTAARAATVAARLAHQLHGGMGITAEYPLHLYTSRLWAWRDEAGSEHQWATSLGGAAAGLGEDAVWDVLTSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMN8</accession>
    <name>A0A0Q8VMN8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05710</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54946">
        <property type="protein sequence ID" value="KRC54946"/>
        <property type="gene ID" value="ASE19_05710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1375732at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008930">
        <property type="entry name" value="Terpenoid_cyclase/PrenylTrfase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48239">
        <property type="entry name" value="SSF48239"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360189" evidence="1">
        <location>
            <begin position="17"/>
            <end position="481"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="481" mass="47918" checksum="C34124BBB8F73842" modified="2016-01-20" version="1">MASGLGLAVPAPVAHAADTPAPEAAAAANWLAGVIGDDGLIPGGGVNGFFYAANLDFGVGLVQTGQAPSAALTKIVDGVDATVASYVGDPAAPANAGKLAQAAYFYAVTGGDPKAAGDSVLDLETALEAQVDDTTGQLGNIDYAGNQVWAVLALTQLGSDEAEKARDFLVGQRETGDAAGWGFGDGTSNPDITSWAVQALATWSWNTRVHTAMEAGVAYLKSVQVGGGIEDPYLGVNANSTGAAAHAFAEAGHPAEAAAAATWIAEHQVVALPRCGVTPTHAGAIAYDDATLAGGIGDDDLDQTAPATAQALVGLAYLPRSAPTVSATTSYVAAGANVAVKVAGLRATQPACVSGGATPVKKTGPGAVTIKAPAGTATRTLTLTTLGVTRTTTLKVLAATKLAVKAPLSARRGTTVAITVSRLAPGEKVTVTVGGVRVVGKATSAGTYVARLTAPRRAGTAKVVVVGQFVNRTGTTTFRVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN10</accession>
    <name>A0A0Q8VN10_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">RNA polymerase sigma factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_22830</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892583.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58901">
        <property type="protein sequence ID" value="KRC58901"/>
        <property type="gene ID" value="ASE19_22830"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006950">
        <property type="term" value="P:response to stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000838">
        <property type="entry name" value="RNA_pol_sigma70_ECF_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01063">
        <property type="entry name" value="SIGMA70_ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="4 5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 5" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="13"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="7">
        <location>
            <begin position="100"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC58901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="17802" checksum="73C6401DE6036EB8" modified="2016-01-20" version="1">MTTGPTADTFDDWVRPHLTTLHRYAARQVGPADADDVLQEALVRAWRRRSTYDAGRGDALPWLLAIVRDRARRHRTRQRPHLELADASEPSVAPVVVDLDLERAVRALPERQREAVDLYYFVGLDVATVAAAMACAPGTVRATLHQARAALRTLIGDDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN69</accession>
    <name>A0A0Q8VN69_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_23140</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892532.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58954">
        <property type="protein sequence ID" value="KRC58954"/>
        <property type="gene ID" value="ASE19_23140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="6"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="168"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="323"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="422"/>
            <end position="515"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="528"/>
            <end position="677"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC58954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="681" mass="71146" checksum="BF6648E8029DFC10" modified="2016-01-20" version="1">MSIGITDEQVELADSLRKWAASLGPLEAARAAEGDVAADFAAVWSAAEEMGIAAIAVPESAGGGGGTVLDQAVALEACARELVPGGLLGAAIGATLTGRPGRYGVQVRPGGVVWDGGTADEQLLLDEGPLAVALGVDLGSRHASVAGGNGGNGDTGDERRRLLAVTLAAAEAAGVARWCLETAVDYAKVREQFGQRIGAFQAIKHLCAQMLETAESVTAAAWDAAAAATALDEGEGDDVQWAFAVDVAQATCFDGAVEVAKSCIQVLGGIGFTYEHDAHLYLRRALTLRALVGSADDAAERLTAAAVAGVRRQVDVDLEGRDEVVRPDARATAERIAALPAGEQRAALVDAGYLTPHWPTPYGLGADPTLQIVIDQELGRAGVVRPDLVIAGWAVPTILSHGTDAQRERFVRPSLLGELTWCQLFSEPGSGSDLASLRTRAVKVDGGWSLTGQKVWTSVAERADWGICLARTDPDAPQHKGITYFLVDMRSSGIEVRPLREITGEALFNEVFLDDVFVPDECVVAEPGDGWRLARTTLANERVAMASARLTRSVERAVELAAAGEVGPVARVQVGHQVALATVCALLGVRTTLRALGGHGPGAESSVAKLLGVRSRQDSSELVVRLQGDNLALLDVIGKASDVPLAADLWEQLNTRCLSIAGGTTQILRNVAGERILGLPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ83</accession>
    <name>A0A0Q8VQ83_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00800</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59596">
        <property type="protein sequence ID" value="KRC59596"/>
        <property type="gene ID" value="ASE19_00800"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018656">
        <property type="entry name" value="DUF2087"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09860">
        <property type="entry name" value="DUF2087"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2087" evidence="1">
        <location>
            <begin position="20"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="93" mass="10982" checksum="FB8EFA4063E31CAC" modified="2016-01-20" version="1">MNPTPDGTEVLRRFFSTEGRLVDMPTRRAKRLVVLDHVAQRFEPGRRYGWREVDEVLHEVHDDHAALRRYLVDEGFLTREDDVYWRSGGTVDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQL2</accession>
    <name>A0A0Q8VQL2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MarR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01180</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896673.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59668">
        <property type="protein sequence ID" value="KRC59668"/>
        <property type="gene ID" value="ASE19_01180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1744037at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="23"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="18191" checksum="532FFB9BC6C17E38" modified="2016-01-20" version="1">MRDEVDQLVEAWARERSDLDLGPVAVFSRISRLAHHVDRARRAAFTAHDIESWEFDVLAALRRAGEPYELSPGRLLRETLVTSGTMTNRVDRLTLRGLVERHPDPSDRRGVLVRLTPEGKDAVDGAFAALLDAERDLLTGLSEKDQQELADLLRRLLVPFAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQR2</accession>
    <name>A0A0Q8VQR2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carbohydrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01455</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896625.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59716">
        <property type="protein sequence ID" value="KRC59716"/>
        <property type="gene ID" value="ASE19_01455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1378040at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025997">
        <property type="entry name" value="SBP_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019546">
        <property type="entry name" value="TAT_signal_bac_arc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13407">
        <property type="entry name" value="Peripla_BP_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10518">
        <property type="entry name" value="TAT_signal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peripla_BP_4" evidence="1">
        <location>
            <begin position="65"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="338" mass="35433" checksum="A51470949FA3100E" modified="2016-01-20" version="1">MSQTPDLSRRRFLGWTGGAGAAVLLAACSAPSSSTDKKDKVAKSSKDVDKIAFDYPFTFLPVYAGVTKFAKARAKEVGVDLTQTSDNGRPDVQASNLDTVIAQKVPAIVSFPMVFEALETQAAAALGAGLIWVTYGGTLKNQSASITFSFEEGGRLLGEDAAAWAKANLGGKGKIAFLVDDTIQLGRERTKGMMDAFTAAAPDMEVVGREQAIDPDTGLSKIKAILAKHPDLNMVLGITDGAAFGGYKALAEAGRAEDDAKTYVGGQDGDLGSLELIRKGTFYRASAALQLRDIGNAVIDVPMAVADGKSDAEASTDVPIALVKQGDDLLDEIISQYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSD8</accession>
    <name>A0A0Q8VSD8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PDZ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04030</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892995.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56978">
        <property type="protein sequence ID" value="KRC56978"/>
        <property type="gene ID" value="ASE19_04030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="741829at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360333" description="PDZ domain-containing protein" evidence="2">
        <location>
            <begin position="34"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="3">
        <location>
            <begin position="305"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="391" mass="38038" checksum="394C56D0E175D5D1" modified="2016-01-20" version="1">MTSPTPRTRTLAAAGVAASVLLVGTGAATTAVAMQVLDRGGATSAGSATLIPSTTSQDDSGVVPDPGSVPQLSPYTRRGQGFDPGTGSTSDETTSDATAEQSAGIVEITSTLANGTGAGTGLVLDQDGTIVTNHHVVEGATSLEVTDVSTGRTYAARYVGGDAVADVAVIQLEDASGLTPVDLSGDAAQVGDTITSVGDAGGDGGALTAAPGTVSALGQDITVQATDGSSAELTDLIRMDAYVVPGDSGGAVLDGDGEVVGMNVAASSGSRQVTGYAIPIATVSSIVDRIDAGDEGGDVELGYHGYLGVGLATSASTPLVAQVIDGTAAQDAGITAGDTITAVDGTSVRTAQALQEAVAAHDAGDRVTITWTTASGGTRSATVTLGEGPVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSL0</accession>
    <name>A0A0Q8VSL0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23940</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57376">
        <property type="protein sequence ID" value="KRC57376"/>
        <property type="gene ID" value="ASE19_23940"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013431">
        <property type="entry name" value="Delta_60_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018511">
        <property type="entry name" value="Hemolysin-typ_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17164">
        <property type="entry name" value="DUF5122"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02608">
        <property type="entry name" value="delta_60_rpt"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00330">
        <property type="entry name" value="HEMOLYSIN_CALCIUM"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360340" evidence="1">
        <location>
            <begin position="23"/>
            <end position="521"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="521" mass="51661" checksum="8CD029968E8CA2B3" modified="2016-01-20" version="1">MVLVAALAVGAGAAVPDGVAGAAGSSTDLGFGTTGRVVVPAGARAVVTDLAVQADGKVVGVGYVANGSINLAGRSLNESDGLVFRLRTDGSIDTTFGIRRLDLGGREEATAVEIQPDGRILVAGSTNSGPDADAVVWRLLWSGAPDSTFGVDGARTLDSGAAEAATDLALARDGKVVVVGGTSVDGGEMVVYRLTAHGLPDSSFNGDGAFGLGGAGNDYAFAVAVQADAKVVVTGRDADASGPSLFRLTEEGLPDPTYGIGGQASLPTSSDVVSDVVPAPRGGLYVATQVNDGSGWDAVVLRMEAGGTIDTSWGDGIRGARVAETGGDEVIRRLAVLPDGSVVGAGDTTADANGLVAQFTAQGGPDRSFSASGARTFSAGLEFIPALAVQRDGKILVGGDDGAAEFRPLVVRLRGISLPNPTCAGKHATIVGTTAADRLVGTPRADVIVTGPGNDVVRGAGGNDVVCGGAGRDLLEGQGGDDRLYGQDGADALRGGYGADLLVGGLGADSLAGGPGRDVLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VT78</accession>
    <name>A0A0Q8VT78_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_24130</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000005">
        <property type="protein sequence ID" value="KRC57346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57346">
        <property type="protein sequence ID" value="KRC57346"/>
        <property type="gene ID" value="ASE19_24130"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032196">
        <property type="term" value="P:transposition"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025948">
        <property type="entry name" value="HTH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038965">
        <property type="entry name" value="InsF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46889:SF1">
        <property type="entry name" value="PTHR46889:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13276">
        <property type="entry name" value="HTH_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="132"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="35725" checksum="4F686934A43A4EA0" modified="2016-01-20" version="1" fragment="single">MAYIDAHRHDVVDGREVGVEPICAVLKNAGVQIAPSSYYAAKTRPSSARAIRDAELVEDIKVAHKANLGVYGARKVHAELNREGITVARCTIERLMRAEGLRGIPREKSRKTTIGDGAETERPEDLVKRKFVASAPNQLWVADLTYVRTHAGWTYVAFVLDVYSRMIVGWQVSTSLRTDLALDALDMGLWNRQRAGRDVTGLTHHSDRGVQYRAIRYTERLAEAEAVASVGSKGDSYDNAMAEALNSLFKAECIRNPVMRPKGGWKNVGDVEIAVAEYVDWFNHRRLHGEIGLVPPAEFEASHWANNTVTDYVETPVPTGAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVS2</accession>
    <name>A0A0Q8VVS2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896684.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59657">
        <property type="protein sequence ID" value="KRC59657"/>
        <property type="gene ID" value="ASE19_01125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2207870at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="100" mass="10385" checksum="A3861D765A53AB8D" modified="2016-01-20" version="1">MSQPSEDITSPRVDPDDDTGQRLPPPPKPTSEPQAPPPGGPHAIEGVGGDGAYTREPHDPDPLLNPATDDLPPETTTGEDTDTEATRGNADVAPEEESPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVX4</accession>
    <name>A0A0Q8VVX4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">T2SSF domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_23980</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894017.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57383">
        <property type="protein sequence ID" value="KRC57383"/>
        <property type="gene ID" value="ASE19_23980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1969674at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018076">
        <property type="entry name" value="T2SS_GspF_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00482">
        <property type="entry name" value="T2SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360424" description="T2SSF domain-containing protein" evidence="7">
        <location>
            <begin position="16"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="38"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="201"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="229"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSF" evidence="8">
        <location>
            <begin position="94"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC57383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="259" mass="25884" checksum="6642D140C8F557D8" modified="2016-01-20" version="1">MTGSVLVAVAGTALAAALLLPGPAPSPRARTAGGSRPALLVLAVVGAVVVAGQPRVALLGCVAVGAGIGALRLVRRRADGRRADAHRARAVELCDALRAELAAGQTAEQALDRAAEEWPFVAPAARAAASGGDVPVALRELATEPGAASLRIVAAAWQVAHRTGHGLADALGRVADDLRAAEQTRRIVTGELASARATARLLAVLPVLALAMGSGAGGSPWSFLLGTPAGLACLVAGLALGYAGLAWVEALARDVDRVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW36</accession>
    <name>A0A0Q8VW36_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">4HBT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01760</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896570.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59769">
        <property type="protein sequence ID" value="KRC59769"/>
        <property type="gene ID" value="ASE19_01760"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="59"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="156" mass="16416" checksum="26C850A054594A34" modified="2016-01-20" version="1">MDTTAGLRALPRHEDPDADWVAWADAYPTFVGAGLRCLSMGRTQASFEYVGTPFPLNPNGAVNGGIVALAVDQIMGVMGARVAPTGTMPVTAVLQVQYHSPAIEPLRMDATAIHAGRNLQTIEVVVTDARGRRCSTATGTMAVGNLEQRIAPAVQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWI4</accession>
    <name>A0A0Q8VWI4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_23275</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892510.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58977">
        <property type="protein sequence ID" value="KRC58977"/>
        <property type="gene ID" value="ASE19_23275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047691at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007061">
        <property type="entry name" value="DUF664"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04978">
        <property type="entry name" value="DUF664"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="203" mass="22223" checksum="F6AF3A4B73621D3F" modified="2016-01-20" version="1">MTTLDLPADVLRTYLGRAREALVWKLDGLGARAVRLPRTPTGTSLLGIVLHCANVEIGYFGATFGRVWPETDHPAFVPEDAYDTDPQADWTVPAEVSTAELVAFYARVGQFVDAALADLPLDTVGRVPWWPQERATTTLHRIAVHVMTDLHRHAGHADILREQLDGAAGYTPAVSNLPDAEGWPSYVERLTAIATQFPDDAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWT6</accession>
    <name>A0A0Q8VWT6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22630</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892619.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58864">
        <property type="protein sequence ID" value="KRC58864"/>
        <property type="gene ID" value="ASE19_22630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1750764at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="111" mass="11875" checksum="A67911C0A6708772" modified="2016-01-20" version="1">MDTVTDEDIQELVATGRPYSLVRLSWAAGRRQEGADAIEREHQRRMVSLRAEGAIAVLCPVLSDGLCGVAIMTQTVEQARETMAADPCVQAGMMTVEVLPCVGFPGDSLPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VX05</accession>
    <name>A0A0Q8VX05_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23170</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892526.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58960">
        <property type="protein sequence ID" value="KRC58960"/>
        <property type="gene ID" value="ASE19_23170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002878">
        <property type="entry name" value="DUF35_OB-fold_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022002">
        <property type="entry name" value="DUF35_Znr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12172">
        <property type="entry name" value="DUF35_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01796">
        <property type="entry name" value="OB_aCoA_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF35_N" evidence="2">
        <location>
            <begin position="18"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="domain" description="OB_aCoA_assoc" evidence="1">
        <location>
            <begin position="54"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC58960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="129" mass="14100" checksum="1A90B650E2DDEBCB" modified="2016-01-20" version="1">MSGPVRPVVNRDNAYFFEGTANRELRIQKCNQCGVLRHPPGPACPDCGAFDRGYVVSAGEGTVFSYLVHHAPQVPGKELPLVIALLDLDEGVRMVAEMTGPVEIGDRANVGWNVIDDDLTLPIWTKVDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYI1</accession>
    <name>A0A0Q8VYI1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896628.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59713">
        <property type="protein sequence ID" value="KRC59713"/>
        <property type="gene ID" value="ASE19_01435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="803444at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001466">
        <property type="entry name" value="Beta-lactam-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00144">
        <property type="entry name" value="Beta-lactamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta-lactamase" evidence="1">
        <location>
            <begin position="79"/>
            <end position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="394" mass="41988" checksum="134E3C5A11122B07" modified="2016-01-20" version="1">MLGGTPGQPQVGVTLDNWQTAPQLHWSFQHIDELFPTATISRGAGPVAALEATPVDLAPLPVTLYDGSVVSVGEVMAQTETDGWIVCRGGRVVAEHYPQAMAPGTRHLLMSVSKSLVGTVAGALVDDGLLDPAAPLASYVPELAASGYAGATVRHLLDMRSGIQFSEAYLDPGAEVRLLEQAIGWAPRQHPGVPHTMHEFLLTLRQKAPHGGPFEYRSGETDVLGWVCEAAAGERMPTLMSRVLWSRIGAEHDAVIGVDSVGSGMFDGGICAALRDLARFGAMLAAGGLSLTGERVVSAAWIEDTYRGDPDSRAAFAQSPTETLMPGGMYRNQFWLPYPDRDVLVCLGIHGQMVYVNPVTGVVAAKLSSWPEPQHAWKLFATLRAFDAVSANLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYN4</accession>
    <name>A0A0Q8VYN4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_01710</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896578.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59761">
        <property type="protein sequence ID" value="KRC59761"/>
        <property type="gene ID" value="ASE19_01710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="3">
        <location>
            <begin position="31"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="4">
        <location>
            <begin position="110"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="365"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="378"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="406" mass="42251" checksum="A3468B4D892C22B1" modified="2016-01-20" version="1">MGLGNRAVKIALALLVVVTLGGFMFVDGGSTRVTAYFAQFKGIYVGDDVTALGVPIGTVTSVTPEKDRVKVEFEIDDDYPVPADVKAAVVAPSLVSVRSIVLGPVGSDGPRLENGAEIPMSRTAIPVEWDDIKDQLVQLSTALGPRGSNDKGATSELISSAAGFLDGNGQTMNDTLENVSEAMSTLADNSGDLFATVRNLQVFVAAIKDSDAQVRAFNIKLAQVAAILEVDRKSLSGALDGLQKAFRSLDSFLARNKDLTVDTLKELRTTTSLLSDDRQKIADLLQVAPTALSNFYNILDPRGENGNLITGALAINNLQAPAQIVCGALLAAGGNPTDCQNALTPLLKYFALNAPPVGIGGVTNNGGGAGGVIEPGSPDTKSPTTTPKTTKQTDQADLVTQLLGGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UM99</accession>
    <name>A0A0Q8UM99_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glycogen debranching protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_19795</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895893.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46117">
        <property type="protein sequence ID" value="KRC46117"/>
        <property type="gene ID" value="ASE19_19795"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004133">
        <property type="term" value="F:glycogen debranching enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005980">
        <property type="term" value="P:glycogen catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02856">
        <property type="entry name" value="E_set_GDE_Isoamylase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044505">
        <property type="entry name" value="GlgX_Isoamylase_N_E_set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006047">
        <property type="entry name" value="Glyco_hydro_13_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004193">
        <property type="entry name" value="Glyco_hydro_13_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011837">
        <property type="entry name" value="Glycogen_debranch_GlgX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00128">
        <property type="entry name" value="Alpha-amylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02922">
        <property type="entry name" value="CBM_48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00642">
        <property type="entry name" value="Aamy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="SSF81296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02100">
        <property type="entry name" value="glgX_debranch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aamy" evidence="4">
        <location>
            <begin position="151"/>
            <end position="572"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="469"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="469"/>
            <end position="485"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="705" mass="78317" checksum="E1C3A29DBC67CB92" modified="2016-01-20" version="1">MGRVTPSLWKSLGEQAEVWPGRNWPFGATWSAESTNFAVYAPNATSVWLCLGLEGPGDAERRYALTEQSLGIWHGALPDVAPGTRYGYRVDGPSEPDEGLRFDPDVRLLDPYGLATAGVAGDAWSVVVDPSFDWGDQTPIKRRWLDTVIYELHVKGFTKLHDRIPEELRGTYAGLGHPVVTQYLNDLGITAVELLPVHQFFSEPALVERGTVNYWGYNSIGYFAPHAAYSSSGDRGQQVTEFKEMVRNLHASGIEVILDVVYNHTAEAGREGPTYSFRGLDDRGFYRRNPPGLDGDPDYDDTYWDVTGCGNTVNSEDPLALRLILDSLRYWVTEMHVDGFRFDLMSAITRTAGPDAIRVDMACKLLIAIGQDPVLRHVKLIAEPWDVSMDGYLVGGMPPPWVEWNDQYRDTIRDFWRGQTAGTQSVATRLAGSSDLYADDGRSAYNSVNFVTAHDGFTVRDLVSYDTKHNEANGEDNRDGTDNNRSWNHGVEGETSDAEVVALRRRQAANLMATLCLSNGVPMLTAGDERGRTQQGNNNAYCQDNEISWVDWRADDAWLDVYAVTRAALRLRREHPALRQRHWFEGRPTIVGGPKDLAWLHPSGREMTDEDWYDAALRTVGMFVSGRPLRQPGPRGEQQIDTSFLIWFHAGADPVEVYLPDNDWVSAGSVVLSTDAGLPDGTRVEVGGVLTIGPRSVVVMQEASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMF5</accession>
    <name>A0A0Q8UMF5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20075</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895940.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46165">
        <property type="protein sequence ID" value="KRC46165"/>
        <property type="gene ID" value="ASE19_20075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359227" evidence="2">
        <location>
            <begin position="28"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="193"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="193"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="244" mass="24783" checksum="D817BC4F95E282C3" modified="2016-01-20" version="1">MHTIRRTAVAALAAATLSIAPLSVAEAAVHAKPAGSHSSHGGKGGGASHHLSAQTRGVLRQVTVRDRALARVAASRAITGLADEQESVLTASIAQDRADLAALKDAVSAGTTKPRAAKAALRAVRVENYLRAVAVLRDAAELADAAVDLPEVLDLVDAVVAGVLEVSATGGRTVLRTARADLEDAWALYDELTAEPEECTADETDDCTDDGTDDGTDDGTGDGTEDGTGGSDDGGDTPEVEPLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMM4</accession>
    <name>A0A0Q8UMM4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_20625</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896023.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46252">
        <property type="protein sequence ID" value="KRC46252"/>
        <property type="gene ID" value="ASE19_20625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="626204at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001958">
        <property type="entry name" value="Tet-R_TetA/multi-R_MdtG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01035">
        <property type="entry name" value="TCRTETA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="24"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="62"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="93"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="121"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="147"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="178"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="219"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="253"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="282"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="309"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="344"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="374"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="24"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="420" mass="42554" checksum="D8A46FEE36923908" modified="2016-01-20" version="1">MTATATPTEQDTETGGSFLHQPRAVWAVAFACVIAFMGIGLVDPILKEIAAKLEASPSQVSLLFTSYMAVMGVAMLVTGVVSTRIGAKKTLLLGLFLIIVFAGLAGLSGSVGAVIGFRAGWGLGNALFIATALSTIVSASKGSLAQAIILFEAALGLGIASGPLVGGLLGEQSWRGPFFGVSVLMTIALVATAIFLPATPPAGRRTTLADPFRALAYPALAVLAVVAVCYNLGFFSLLAAGPFALPEAGIMEIGWIFFGWGLLLAFTSVVGAPWVQRRLGTVPALIGALALFALDLLLMAVGASTSTVVVVGIIVAGAFLGVINTLVTEAVMGAAPVERPVASAAYSFVRFTGGAVGPYVALRLAEHQGSAAPFWFGGICVAVGVVVLLAGARTISTALHGTPAAHSADEAQAEALGDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMT2</accession>
    <name>A0A0Q8UMT2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896086.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46315">
        <property type="protein sequence ID" value="KRC46315"/>
        <property type="gene ID" value="ASE19_20975"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1292067at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="16"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="84" mass="9159" checksum="F3B08768FFF7B2B0" modified="2016-01-20" version="1">MEHLEAATLVQIGRNIRAERSRRDLTQEGVARRAGLATTQIARMERGETDSGISKYLRVAVAIGMSPADLFFGVEITLADAAEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMW4</accession>
    <name>A0A0Q8UMW4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PLDc_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46111">
        <property type="protein sequence ID" value="KRC46111"/>
        <property type="gene ID" value="ASE19_19765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1881748at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PLDc_2" evidence="1">
        <location>
            <begin position="60"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="409" mass="44943" checksum="061B547AE6B7DEED" modified="2016-01-20" version="1">MVLLVSVVVPGEAAPPAVGRTTAAPWLPDTRPVFNDPTGVATARRRVIARVHEAIRHTPAGATIRLATYNIDRVDTADLLLQARARGVRVQIVVNDNLVNPVIRRLQHRLGANPSRGSFLVICRAACRNGSSTGNLHMKIYSFTQAGGARSVVISSSSNLGRAAANGQWNDAITVYGDETLFATWVAIFDQLKRDRPVSPRYVTYQTDGVSADFQRPVVSSVTRTRLATTDPQLRRLRQVGCRAPAGFGVGGRTVVRVNMYAWYATRGERLAGELASMQREGCRVYVIGSVVSAPVVRILRNAGIPVRVADWDWGEKPATSGDRTVIGSRCYSHLKYVTVNGLFRGRGARAVWTGSENWSPPGTSSDEVTFELNDARVARAYVEQWWRMWSDRDATHRPGVRPTRRPCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMZ1</accession>
    <name>A0A0Q8UMZ1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SpoIID domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21025</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896095.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46324">
        <property type="protein sequence ID" value="KRC46324"/>
        <property type="gene ID" value="ASE19_21025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1303819at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030435">
        <property type="term" value="P:sporulation resulting in formation of a cellular spore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013486">
        <property type="entry name" value="SpoIID/LytB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013693">
        <property type="entry name" value="SpoIID/LytB_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30032:SF4">
        <property type="entry name" value="PTHR30032:SF4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08486">
        <property type="entry name" value="SpoIID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02669">
        <property type="entry name" value="SpoIID_LytB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359225" description="SpoIID domain-containing protein" evidence="1">
        <location>
            <begin position="33"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="domain" description="SpoIID" evidence="2">
        <location>
            <begin position="185"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="385" mass="41130" checksum="5F738052FA7BECE5" modified="2016-01-20" version="1">MRLLSRTLLTALATVAGLTVVPGVSTPSPAAAATSWELQGRGWGHGIGMSQYGALGAANKGLGYRRILGFYYPGTTVGTAKGSIRVLVTAEKRNTLTVANRTGLTVRSTTTGTSYALKRAGATRWRILPSADNATSRVYVLVSGRWVLVRQIRGGAEFIAPSLRLYLPTGSKVLRGRLRSVIVNGQRDVVNILPLEYYVRGVVPLEMPASWHRQAVRSQAVAARTYAAFERASRTSSYFDVYDTTRSQVYGGLSAEDARSTAAVSDTAGEVRLYAGKPAFTQFSSSNGGWTVASSNADLPYLKAQADPYDPIRTWHWTLTQAELNKALPGIGTVSAVTVTERDGNGAGGGRVTLLKVTGTGGTRTITGSDLRSAIGLLSTYFWIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMZ6</accession>
    <name>A0A0Q8UMZ6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Phosphatidate cytidylyltransferase</fullName>
            <ecNumber evidence="7">2.7.7.41</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_19945</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>a 1,2-diacyl-sn-glycero-3-phosphate + CTP + H(+) = a CDP-1,2-diacyl-sn-glycerol + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:16229"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:58332"/>
            <dbReference type="ChEBI" id="CHEBI:58608"/>
            <dbReference type="EC" id="2.7.7.41"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 3/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the CDS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.41" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895919.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46143">
        <property type="protein sequence ID" value="KRC46143"/>
        <property type="gene ID" value="ASE19_19945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1533756at2"/>
    <dbReference type="UniPathway" id="UPA00557">
        <property type="reaction ID" value="UER00614"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004605">
        <property type="term" value="F:phosphatidate cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016024">
        <property type="term" value="P:CDP-diacylglycerol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000374">
        <property type="entry name" value="PC_trans"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01315">
        <property type="entry name" value="CDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 10" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="34"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="84"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="129"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="162"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="205"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="231"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="295" mass="30636" checksum="FBEC1B0450A2AEF2" modified="2016-01-20" version="1">MSTTPSSGQPAASVPQKDHGRAGRDLKAAVGSAVVLLSAIAASLLIWKPAFMAIVAIAVVVAVWELRKGLLAKDIDLPEQPLMVGGVVMVVVAYLWGSAALVTATAVAALVIMLWLLRRGIDGYVKNATASVFSLVYLPFLGSFVALLLAEGGRNGGGLDDKGVQGIITFILVTIASDIGGYIAGVLFGKHPMAPVISPKKSWEGFAGSAIATVGAGVALVVYLLEGDWWIGVALGLIAVVMATLGDLCESVIKRDLGIKDMSQVIPGHGGLMDRLDSLLATIAPIWLLLHYGVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN09</accession>
    <name>A0A0Q8UN09_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytoplasmic protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21355</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896151.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46380">
        <property type="protein sequence ID" value="KRC46380"/>
        <property type="gene ID" value="ASE19_21355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1594634at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009351">
        <property type="entry name" value="YcaQ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06224">
        <property type="entry name" value="HTH_42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="401" mass="45173" checksum="576E67712E0A4355" modified="2016-01-20" version="1">MQSLSRAQARRVALAAQGFLDPPHAVATLRTFDRTVARTGVLQVDSVNVLQRAHFMPLYSRMGPYDVDLLRRASSGRQRRMVEYWAHVQAFMPVELWPAMRHRMDQYRDRRGKWFTVAEDDQLEAALLAEIADRGPSTARELDDGLPRTKDHWGWNWSRTRRMLDYLFTVGDLAIEGRNSQFEIRYDLPERVLPARYVDAPALSATDAHVELVRRAARSHGVASAQCLADYYRIRVGEARPAIAALVEAGELEPVRVEGWSRPAYLHTDARLPRKVGARALLSPFDPVVWERDRAEALFDFFYRIEIYVPADQRVHGYYVLPFLLGDRIVGRVDLKADRATGRLLVQSAWAEGHAPPETASELAVELWRLAGWLGLDAIEVAPKGDLAPSLVSALAACGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNE9</accession>
    <name>A0A0Q8UNE9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Growth inhibitor PemK</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20995</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896090.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46319">
        <property type="protein sequence ID" value="KRC46319"/>
        <property type="gene ID" value="ASE19_20995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1924690at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003477">
        <property type="entry name" value="PemK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011067">
        <property type="entry name" value="Plasmid_toxin/cell-grow_inhib"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02452">
        <property type="entry name" value="PemK_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="134" mass="14553" checksum="D02F36B9311E1C50" modified="2016-01-20" version="1">MSDAPDGSYAPVPDGHPDPGEVVWAWVPYEDDPSQGKDRPVLVIGTAVGAAGEPLLHCLVMTSKDHDRDAEQEAAAGRYWTDVGTGAWDPRGRPSEVRLNRLLVIPADSVRREGAALPPQTYAAVIAERQRFLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNJ0</accession>
    <name>A0A0Q8UNJ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">2'-5' RNA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22225</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896300.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46532">
        <property type="protein sequence ID" value="KRC46532"/>
        <property type="gene ID" value="ASE19_22225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1696971at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009097">
        <property type="entry name" value="Cyclic_Pdiesterase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55144">
        <property type="entry name" value="SSF55144"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="168" mass="18476" checksum="B01EC0682E9EEF98" modified="2016-01-20" version="1">MPVIGVAVAIPEPWATELHDYRLSIGDPTAAGVPSHITLIPPTEVEGDLAEIETHLAQAATRVAPFSVHLRGTATFRPVSPVVFVGLVEGISQCEQLADEVRRGPLAVDLDYPYHPHVTVAHHLDDPTLDRAFEELAGFDCRFGVTDFHLYVHHDEEGWRATRTFPLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNT7</accession>
    <name>A0A0Q8UNT7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21980</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896415.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46646">
        <property type="protein sequence ID" value="KRC46646"/>
        <property type="gene ID" value="ASE19_21980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="249" mass="26356" checksum="C52C8C802FAEA55F" modified="2016-01-20" version="1">MAVRTIRHDRTLIIGLDRPAKRNAINAAVTRGLDEALNLLEDDDDLWCGILAGGPTVFSAGADLVEGPGAPTERGGIAGIMSRVRPKPLIAAVEGVALGGGFELVLCCDLVVASRTASFGFPEVKRGLLPDFGGVFRAPRVLPANVARELLLTAEPLGAERAERLGFVNRLVEPGMVLDVALGLASTITGNAPLAVRESLALAHAEINGDESEDWAASHAALDRLLVSADVREGIDAFFERRDPVWRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UR33</accession>
    <name>A0A0Q8UR33_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20395</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895988.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46217">
        <property type="protein sequence ID" value="KRC46217"/>
        <property type="gene ID" value="ASE19_20395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="64" mass="6978" checksum="913DA0995C19C37E" modified="2016-01-20" version="1">MGWWAWVLIAVAAVLIIGFVYDRRRAGAARVRGDSASRQRDFGRSVEHDNSGLQRKIGGGPGPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UTK0</accession>
    <name>A0A0Q8UTK0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-methyladenine DNA glycosylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20355</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46211">
        <property type="protein sequence ID" value="KRC46211"/>
        <property type="gene ID" value="ASE19_20355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1396351at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="282" mass="32308" checksum="9ACF7177EBBA869C" modified="2016-01-20" version="1">MDLRLLLVNAEEWEQRAAAHTARLGPYVEPHLERRRLQVKHPVHDFLFTYYSYRPSQLMRWQPPGELDAAKLPLARSTLALLRATAGREGNFGCFGLHEWAMVYRDPETRHPQPLRLGHDGTNRVVDSHRIGCSHWDAYRFFTPAALPLNTLRPFKDDRTDFEQPACLHATMDLYKHAYRLAGVLGSDLVADAFELAWDVRIMDMRAAPYDMSGLVIDPYGIEWTPITIETSEGKREYAALQRRYAERATPIRERMVEALDQAVDAIDAIDRSPSSGTAIRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU82</accession>
    <name>A0A0Q8UU82_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nitrite reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893129.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48725">
        <property type="protein sequence ID" value="KRC48725"/>
        <property type="gene ID" value="ASE19_17480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1588103at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005117">
        <property type="entry name" value="NiRdtase/SiRdtase_haem-b_fer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036136">
        <property type="entry name" value="Nit/Sulf_reduc_fer-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03460">
        <property type="entry name" value="NIR_SIR_ferr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55124">
        <property type="entry name" value="SSF55124"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56014">
        <property type="entry name" value="SSF56014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NIR_SIR_ferr" evidence="1">
        <location>
            <begin position="26"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="280" mass="28549" checksum="6ED96566B6EB02DA" modified="2016-01-20" version="1">MSQTSRTRPDRCPGIVHPWPADDGGLVRVRVPGGQVSRAALTGLARVAEEYGDGRVRVTGRANLQVRAMPLTAGGVLAGDALAALEATGLLPSRAHDRVRNVLASPQTGLAGGRADLRPVLADLDALLLGDATLAGLPGRFLFTLDDGRGDLADKHLDLGLVALDATTAQLRVGEHWGDVVPLTAAPAALAALAREFLAARGTGPDAPWHVPELGDPLAAPRPASPGAAVATGPLPLGPVAGGTHVACPDEGLDLATIAGWTAATVVVTPWHGVLIPEEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUL0</accession>
    <name>A0A0Q8UUL0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Mycothiol S-conjugate amidase</fullName>
            <ecNumber evidence="2">3.5.1.115</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mca</name>
        <name evidence="3" type="ORF">ASE19_22040</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl-inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + mycothiol S-conjugate = 1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside + an N-acetyl-L-cysteine-S-conjugate</text>
            <dbReference type="Rhea" id="RHEA:36543"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58718"/>
            <dbReference type="ChEBI" id="CHEBI:58886"/>
            <dbReference type="ChEBI" id="CHEBI:59633"/>
            <dbReference type="EC" id="3.5.1.115"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="2">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MshB deacetylase family. Mca subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.115" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46499">
        <property type="protein sequence ID" value="KRC46499"/>
        <property type="gene ID" value="ASE19_22040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010126">
        <property type="term" value="P:mycothiol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010127">
        <property type="term" value="P:mycothiol-dependent detoxification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10320">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01482">
        <property type="entry name" value="Mca"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003737">
        <property type="entry name" value="GlcNAc_PI_deacetylase-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024078">
        <property type="entry name" value="LmbE-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017811">
        <property type="entry name" value="Mca"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12993">
        <property type="entry name" value="PTHR12993"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12993:SF16">
        <property type="entry name" value="PTHR12993:SF16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02585">
        <property type="entry name" value="PIG-L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102588">
        <property type="entry name" value="SSF102588"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03446">
        <property type="entry name" value="mycothiol_Mca"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <position position="25"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="302" mass="34187" checksum="92C528A04D84AB2C" modified="2016-01-20" version="1">MGRMPTTHAPAVDRSGLRLMHVHAHPDDESSKGAASTARYVAEGADVRVVTCTGGERGSILNPKMDRPEILENITEVRRQEMERARDILGVSQSWLGFVDSGWPDGDPKPPLPEGCFGLVPLEEATERLVRLIREFRPHVVTTYDERGGYPHPDHIRCHEVSVAAFDAAGDPERFPDAGEPWQPLKLYYHHSFNRPRMQALHDAMVEHGLESPWEERLRDWKPEPEWDARITTKVPCAEWFGVRDQALLAHATQIDPDGFWFAVPRELQERVWPTEDYELVTSHVTSPVPEDDLFAGVDPDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUS5</accession>
    <name>A0A0Q8UUS5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">APH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18915</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893374.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48972">
        <property type="protein sequence ID" value="KRC48972"/>
        <property type="gene ID" value="ASE19_18915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1003984at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="153"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="378" mass="40796" checksum="A51F1E1885B8C1E5" modified="2016-01-20" version="1">MHDRSALGPADVDDATLAAMLATLYDAGDAAVAVVASHAEPVDYDLPAITTGGRWWVRGVAAVDGHERDFTLFVKHVHEWSRSPFFADLPPEVRPWAAKQVPWRTEGAVYRSDLGSRLPDGLSMPRALGVHPIDDLAYAVWLEVVPSVEVAWDRDRYERAARLLGRLAGSAEVRAVAGIGGHEWDITRYVEGRLRFQVLPALADDGLWQHPLVGPAFGDLRPRLEEAAARVDAIAAELMAMPVLAGHGDACPNNLLVRPDRDGFTLIDFGFFTALPLGFDLGQLLVGEVQLGRGDVSELGARGEACLASYRAGLAEEGVAVDLATLRRAHALQLLLFTGLSSIPFELLGEEPTDALRAMAATRAAIARHSLDLVDQTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUS9</accession>
    <name>A0A0Q8UUS9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">IclR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_18780</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893351.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48949">
        <property type="protein sequence ID" value="KRC48949"/>
        <property type="gene ID" value="ASE19_18780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="370329at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="4"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="67"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="252" mass="26833" checksum="51EDE6ABDCFACA76" modified="2016-01-20" version="1">MAQVPAATRALRVLRYLAAQPEPVAVERIARDLDIPRSTAYHLLQAMVEEGFVVHLADDRRFGLGVAAFEVGSGYARQAPLQRIARRPLALLVDRIGQSAHLAVPHGRDVLYVVEERAPGRPSLVTDVGVRLPSHLTASGRAILAHLPPNQVRALYPDRAAFVDRTGVGPGSPTALRAVLAETRRRGYAVEDGEVTPGMSSVAAAVLDHNGLPVAGVAVTYPADGRQPVDADRIAEAVTSTAGALSRRLHGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUX8</accession>
    <name>A0A0Q8UUX8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_19630</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46595">
        <property type="protein sequence ID" value="KRC46595"/>
        <property type="gene ID" value="ASE19_19630"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003583">
        <property type="entry name" value="Hlx-hairpin-Hlx_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019554">
        <property type="entry name" value="Soluble_ligand-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10531">
        <property type="entry name" value="SLBB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00278">
        <property type="entry name" value="HhH1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="domain" description="HhH1" evidence="3">
        <location>
            <begin position="171"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="domain" description="HhH1" evidence="3">
        <location>
            <begin position="201"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="223" mass="22099" checksum="2B7DE15DCEE40BA5" modified="2016-01-20" version="1">MRGRLPVLSPVHVALVALAVAVGLAVTTWWVVRDDPGPAVEPVSAEPLAPLVEPSAPGSRSPSDEVSPAGAAAPVGSTTTVTVDVTGKVRRPGIVVLDQGARVTDALSAAGGAKRGVDLSTLNLARVLVDGEQIVVGARSTGAAPAPAPAAGGDAAGAPAAPVNLNLAGQAELESLPGVGPVTAQAILAWRDQQGGFTSVDELLEVDGIGEKTLARLAPHVTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVC7</accession>
    <name>A0A0Q8UVC7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18835</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893361.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48959">
        <property type="protein sequence ID" value="KRC48959"/>
        <property type="gene ID" value="ASE19_18835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2041175at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021408">
        <property type="entry name" value="DUF3046"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11248">
        <property type="entry name" value="DUF3046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="64" mass="7255" checksum="941C4ED8C12DD4A5" modified="2016-01-20" version="1">MRHTELWARMDHHLGSGYARVWATQYVMGELGGRTTQEALDAGFAPKEVWRAVWAALDLPASER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXU5</accession>
    <name>A0A0Q8UXU5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative gluconeogenesis factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15845</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Required for morphogenesis under gluconeogenic growth conditions.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the gluconeogenesis factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893557.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50090">
        <property type="protein sequence ID" value="KRC50090"/>
        <property type="gene ID" value="ASE19_15845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="665169at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043743">
        <property type="term" value="F:LPPG:FO 2-phospho-L-lactate transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10680">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00973">
        <property type="entry name" value="Gluconeogen_factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002882">
        <property type="entry name" value="CofD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038136">
        <property type="entry name" value="CofD-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010119">
        <property type="entry name" value="Gluconeogen_factor"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30135">
        <property type="entry name" value="PTHR30135"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01933">
        <property type="entry name" value="CofD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142338">
        <property type="entry name" value="SSF142338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01826">
        <property type="entry name" value="CofD_related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="34091" checksum="37FA60C93ECCE46B" modified="2016-01-20" version="1">MSDQRAQAVVALGGGHGLHASLSALRHLLDDLTLDELTAVVTVADNGGSSGRLRGEFGVLPPGDLRMALAALCGDDEWGDTWTRVLQHRFEGDGEMRGHVVGNLLIVGLWELLGDHVDALDWVGRLLGARGRVLPMAQVPMDITAEVRGLVPDDPDALTCVRGQVEVATTDGVIASIALQPESPEVSPAVLDAIADADWAVLGPGSWFTSVLPHLLVPALREALVRTDARLVVVLNLEEQEGETPGFGPADHLAVLAEHAPDLHIHTVLADRGSVGGGLAELEEMVHALGARLVVDDVAADDGEPHHDPVKLAAAYARIFSTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXX5</accession>
    <name>A0A0Q8UXX5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_16015</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893584.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50117">
        <property type="protein sequence ID" value="KRC50117"/>
        <property type="gene ID" value="ASE19_16015"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1112046at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032781">
        <property type="entry name" value="ABC_tran_Xtn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12848">
        <property type="entry name" value="ABC_tran_Xtn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="2"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="326"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="260"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="358"/>
            <end position="365"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="532" mass="57747" checksum="150366FCF75613F5" modified="2016-01-20" version="1">MITVHQLEVRVGARLLMENVSFRVGPGDKVGLVGRNGAGKTTLTKVLAGDVLPAGGSVTNAGELGYLPQDPRVGDPEILVRDRILSARGLDDAVRRMRAAEVAMASEDPKERDKAFRKFQRAQDELDAGGGYAAETEALQIAQSLGIPDRLMEQPLGTLSGGQRRRVELARILFSSAEVLILDEPTNHLDADSILWLRDWMKSYKGGFIVISHDNNLLEETVNKVYHLDANRAVIDVYNMGWKNYLTQRETDEARRKREMMNAQNKAKTLTDQANKMRAKATKASAAQQMLKRAEKLLDGVEGERQSDKVAAIKFPTPASCGKTPLSAHDLSKSYGALEIFTAVDLAIDKGSRVVILGLNGAGKTTMLRILAGVDKPDTGEVVAGHGLKVGYYAQEHETLDVHRTVLDNMQSAAPQLTDTEARSVLGSFLFSGDDVHKPAGVLSGGEKTRLALASLVVSAANVLLLDEPTNNLDPASREEVLNAIRRYEGAIVLVTHDEGAVHALEPDRVLILPDGVEDLWSPDYADLVALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY37</accession>
    <name>A0A0Q8UY37_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">YCII domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16305</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the YciI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893636.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50168">
        <property type="protein sequence ID" value="KRC50168"/>
        <property type="gene ID" value="ASE19_16305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2051456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005545">
        <property type="entry name" value="YCII"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03795">
        <property type="entry name" value="YCII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YCII" evidence="2">
        <location>
            <begin position="26"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="112" mass="12115" checksum="E272A63847FF78C5" modified="2016-01-20" version="1">MTQYLISFDSGWMVFPDEDLPDVERDTVAVAEEARAAGVWVYGGGLEDQRASIVGVDGVVTDGPFPETKEVIGGFVVLEVASREEALAWAAKLAVACRCSQEVRELLPDPSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY66</accession>
    <name>A0A0Q8UY66_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PilZ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15535</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50031">
        <property type="protein sequence ID" value="KRC50031"/>
        <property type="gene ID" value="ASE19_15535"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035438">
        <property type="term" value="F:cyclic-di-GMP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009875">
        <property type="entry name" value="PilZ_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07238">
        <property type="entry name" value="PilZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PilZ" evidence="1">
        <location>
            <begin position="112"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="234" mass="25199" checksum="6CAA872CC1F7C7FA" modified="2016-01-20" version="1">MKGMSTSRPVTVAAELHPALLQPVGLRLRPTTGDTLDVETRVLDVEPYGDGGTTLVVACPDGLDPDEHHFDASVSWTYPLGRMECAVSTRPAVRHYGRVWLLRPSAAPTRLQQRAFFRARVAVPVALVWTTEPAEDGPAEDEPEKHALLGVAVDLSEGGALAAAQGDIPPVGADVEATVRIDGDNLAQPARVVRHVQFAGGGTGVALSFADPTAHGDRIRRLVFETERRRQRPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYI5</accession>
    <name>A0A0Q8UYI5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Segregation and condensation protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893795.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50326">
        <property type="protein sequence ID" value="KRC50326"/>
        <property type="gene ID" value="ASE19_17200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="959677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003768">
        <property type="entry name" value="ScpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33969">
        <property type="entry name" value="PTHR33969"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02616">
        <property type="entry name" value="SMC_ScpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="283" mass="31106" checksum="972D390C356680FD" modified="2016-01-20" version="1">MSEEDALGEAESDSKGGFEVHLTNFEGPFDLLLSLISKHKLDVTEIALSKVTDEFIAHIKHLPDADLEETTSFLLIASTLLDLKAARLLPQGDVEDEEDLALLEARDLLFARLLQYKAYKQVAAVFDARLQAESRRFPRAVGLEERFAGLLPEVLIGIGLDAFAALAARAMTPKPELELTLHHIHAPTVSVREQAAVVVDRLRRSGTMTFRALCGDSPDTLTTVARFLSLLELFREGAVAFDQVTPLGELTVRWTGDEAVDVEDLITDEFDGAPLPPEESTDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYK8</accession>
    <name>A0A0Q8UYK8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_16025</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893586.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50350">
        <property type="protein sequence ID" value="KRC50350"/>
        <property type="gene ID" value="ASE19_16025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1181903at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="15"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="51"/>
            <end position="58"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="262" mass="27907" checksum="7B9E2601EDF815AC" modified="2016-01-20" version="1">MSEAPLAPPAARIAARAVDLRKTYGSGDSEVRALDGVSVDLAAGEFTAIMGPSGSGKSTLMHCLAALDTPTSGQVVVGDTDLSRLRDKALTALRRDQVGFVFQAFNLIPTLSARENILLPLSLAGRRPDQAWFDTVVDTVGLRDRLGHRPAEMSGGQQQRVACARALVSKPGIVFADEPTGNLDSTSGAEVLSFLRRSVDEFGQTIVMVTHDSVAASYCDRVIFLADGRLVDEIRRPEGEQASQVDLILQRMAAIGSVDTQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V062</accession>
    <name>A0A0Q8V062_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21680</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896209.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46439">
        <property type="protein sequence ID" value="KRC46439"/>
        <property type="gene ID" value="ASE19_21680"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="954" mass="103107" checksum="5A42C1420675FAD5" modified="2016-01-20" version="1">MAALQYRFAVVAGDAGIGKSEVLKVTSRALQEAGRVLVSPPVALSRRPGALQEALFASLGSAIAADPSQAPAMQWATVVRGAIDRANQAQVRDMLGAAHAFVIDVVRARFGDAAADLLVETGQQMRLSAEAQLSARIAAAADPDALTAFVILADEAVRVTRRPIVVVIDGAERLSDGDFRMLMDLIEQLPENIHLISSHTTSNAPQLARVRELSQVQTVRRDEGARAPIAVARAITLDPLTRDQVMEWIAEAGVAIEVRHRVLGLVLQTTGAYPLHVDQAIKALLEGRHLETLGREDAFVARTQQTYAVLTAEEQRAVMLLSPFADPPDIETILAITGATDLEWSLLERRLAEARVFVVSVRGRPWFHELGRRAIWAATLSESQRQRAAGIAVEAIVSNVARNGALSVQNGMDLVTVAPLAGDQLLLHAGLADSLTLSDGALAVLGALIELTDGDNQGALDASYAVGYARTRFPLAESVSNDSVEELEERGFAVSESNKDATIIVPWWPSPAAHAAVIGRISARLERVPVRSIASAVIKGHLLSTAGPFESAHYGVGRPTITNLSTVLKEFEFDREMDDEGRVLAGLHRERPGLLLRPRIDDIGLYLAVNFATPEQRDLARGALAGMAADTFAFGERLSVGRVDDWPARAPLPSKRFSNAAELVLGTSFHTGVSGAAQSLLAPVANYTEELQLSLSAWSVVRELASPLERDALDVDEAWGYAFAAADGWVIVGEVRGREPSVVEVDWTGAIADLPHRRELLRAIDLATGERLTAINARTSAPKNPVLDILMLTKRRFTAFNRAQTWRCQYVAPANFEDLATQLNESHQRAYDDATAFIASGLLPTIPGRALGQDVYLRFERERDRPIGVEWTMYELRLAAESGGAGVVRVSLESDSAKSSQDAAISWMDADAFRRWFDLPTGAVPISVGVSEPESGISNLLGYERILMPDLVQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1R5</accession>
    <name>A0A0Q8V1R5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Putative 3-methyladenine DNA glycosylase</fullName>
            <ecNumber evidence="5">3.2.2.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_15050</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the DNA glycosylase MPG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.-" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896470.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51403">
        <property type="protein sequence ID" value="KRC51403"/>
        <property type="gene ID" value="ASE19_15050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1385409at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003905">
        <property type="term" value="F:alkylbase DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00540">
        <property type="entry name" value="AAG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00527">
        <property type="entry name" value="3MGH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011034">
        <property type="entry name" value="Formyl_transferase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003180">
        <property type="entry name" value="MPG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036995">
        <property type="entry name" value="MPG_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10429">
        <property type="entry name" value="PTHR10429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02245">
        <property type="entry name" value="Pur_DNA_glyco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50486">
        <property type="entry name" value="SSF50486"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00567">
        <property type="entry name" value="3mg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="4 5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC51403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="201" mass="21299" checksum="77B8A164B0B1F22A" modified="2016-01-20" version="1">MPDHPDVVRRARALLGRTITGHGVTVRITEVEAYAGREDPASHAFTRTPRSEIMYGPAYRLYVYRSYGIHFCANVVTGPAEIGAAVLLRAGEVVDGVDLARLRRNAPAKDSQLARGPGNLAQALGITLDDLGTDLLGPGEGVRLGPEAPAGGRIASGPRVGVSKAADVPWRFWIAGDPTVSAYRRSARAPSPGTTLSAREH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2I0</accession>
    <name>A0A0Q8V2I0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">BFN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16220</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893621.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50153">
        <property type="protein sequence ID" value="KRC50153"/>
        <property type="gene ID" value="ASE19_16220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1594801at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.690.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036104">
        <property type="entry name" value="BFN_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003729">
        <property type="entry name" value="Bi_nuclease_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02577">
        <property type="entry name" value="DUF151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103256">
        <property type="entry name" value="SSF103256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51658">
        <property type="entry name" value="BFN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BFN" evidence="1">
        <location>
            <begin position="1"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="156" mass="16816" checksum="F973C28117B1562A" modified="2016-01-20" version="1">MREVDVLGVRVEMPSNQPIVLLRETSGDRYVPIWIGAVEATAIAFAQQGVVPPRPLTHDLMKELLAATGSELSEVRITDVKDGVFFATLVLASGVEVSARPSDSIALALRTGTTIYCSDDVLAEAGISAPAEEEDEVEAFREFLDHVSPEDFESGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3V5</accession>
    <name>A0A0Q8V3V5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18725</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893343.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48941">
        <property type="protein sequence ID" value="KRC48941"/>
        <property type="gene ID" value="ASE19_18725"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359675" evidence="1">
        <location>
            <begin position="42"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="155" mass="16447" checksum="3551182242C7102F" modified="2016-01-20" version="1">MNRILSGSGARTVITRSVAPVCAALLVALVAALGVVSPASAATGWKSIYRSADGKVVIQACGNATTFTPRVVNRRSVRLADVYIAVLRERDGSGPAQFIQGIAPGSVERGLPMKRFTTYVAARHRGVVSIRNKGRINGTEGRFNTELLNSLPRCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5V0</accession>
    <name>A0A0Q8V5V0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Pyrroline-5-carboxylate reductase</fullName>
            <shortName evidence="2">P5C reductase</shortName>
            <shortName evidence="2">P5CR</shortName>
            <ecNumber evidence="2 3">1.5.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">PCA reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">proC</name>
        <name evidence="6" type="ORF">ASE19_10285</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-proline + NAD(+) = 1-pyrroline-5-carboxylate + 2 H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:14105"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15893"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="EC" id="1.5.1.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 3">
            <text>L-proline + NADP(+) = 1-pyrroline-5-carboxylate + 2 H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:14109"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15893"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="EC" id="1.5.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 3">Amino-acid biosynthesis; L-proline biosynthesis; L-proline from L-glutamate 5-semialdehyde: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2 3">Belongs to the pyrroline-5-carboxylate reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.2" evidence="2 3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894729.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52796">
        <property type="protein sequence ID" value="KRC52796"/>
        <property type="gene ID" value="ASE19_10285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1349288at2"/>
    <dbReference type="UniPathway" id="UPA00098">
        <property type="reaction ID" value="UER00361"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004735">
        <property type="term" value="F:pyrroline-5-carboxylate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055129">
        <property type="term" value="P:L-proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01925">
        <property type="entry name" value="P5C_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028939">
        <property type="entry name" value="P5C_Rdtase_cat_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029036">
        <property type="entry name" value="P5CR_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000304">
        <property type="entry name" value="Pyrroline-COOH_reductase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11645">
        <property type="entry name" value="PTHR11645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03807">
        <property type="entry name" value="F420_oxidored"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14748">
        <property type="entry name" value="P5CR_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000193">
        <property type="entry name" value="Pyrrol-5-carb_rd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00112">
        <property type="entry name" value="proC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00521">
        <property type="entry name" value="P5CR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0521">NADP</keyword>
    <keyword evidence="2 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 3" id="KW-0641">Proline biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F420_oxidored" evidence="4">
        <location>
            <begin position="6"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="domain" description="P5CR_dimer" evidence="5">
        <location>
            <begin position="160"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF14748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="266" mass="27616" checksum="8263303F75698BAE" modified="2016-01-20" version="1">MTKRTAVIGAGVMGETLLAGLIRTGRSGDDLVVVEKRAERATELAGRYGVPVVADVVRAGDADTVLLVVKPQDMADLLRELAPALRPGHLLVSLAAGITTAFIESLVPEGVGVVRVMPNTPALVDEGMAAVSPGTYCDEAQLAEAEELMASVGHVVRVPEKQQDAVTAISGSGPAYVFLVVEAMIEAGVHLGLPRTVAHELAVQTVLGSATMLRQTNEHPAVLREQVTSPGGTTAAALRELEVHGLRAAFLAALEAARNRSAELGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6E6</accession>
    <name>A0A0Q8V6E6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11370</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894918.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52988">
        <property type="protein sequence ID" value="KRC52988"/>
        <property type="gene ID" value="ASE19_11370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1648710at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023869">
        <property type="entry name" value="tRNA_Adeno_NH3ase_assoc_put"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03941">
        <property type="entry name" value="tRNA_deam_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="164" mass="17546" checksum="FFF35828F80FD8E6" modified="2016-01-20" version="1">MSAAGPTTESVDFALAAYREEGVWQVAELTPDHATDVETLVSALRRFPGDGGVVGLVAVEEDFFVVVRVSGQQTRVMLSDISAATEWELAAEVVDHLGLPVVDDEDDPEPAGDLELLSDLGVDAMFLAEILDDDELYPDEMLSEIARGMGFGELFDDVVGLTSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6F8</accession>
    <name>A0A0Q8V6F8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Steroid C27-monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15605</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893514.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50045">
        <property type="protein sequence ID" value="KRC50045"/>
        <property type="gene ID" value="ASE19_15605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="816674at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002397">
        <property type="entry name" value="Cyt_P450_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00359">
        <property type="entry name" value="BP450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="411" mass="46410" checksum="6154BAFB80B257E6" modified="2016-01-20" version="1">MTELLLPEGWDPTNPDINAVALPHDEFRALRANEPIRWIEQPPHARAGFLDTGYWACTRHQEVREISKDNENWSTAENGVIIRFAEDMTRDQVEVQRAMLIHHDPPDHTKMRGIVSRGFTPRAIAGLKENLRARAYEIVQESLDRGAGDFVADLAAELPLQAIADFLGVPQEDRKKIFEWSNSMMGYDDPDNTSDPATASMELLVYFDALANERRANPQDDIVTKLVSVGQDDDHGALTNDEFGFFVILLAVAGNETTRNAISHGMHAFFQHPDQWELWKNERPETMIDEVIRWSTPVTVFQRTAKNDVVVAGQEVKKGARVGIFYASANFDETVFDDPFTFDITREKNPHVAFGGHGAHYCIGANLARMEIKLIFEALADLAPNIQLAEEPKRLRSGWLNAIKEMQVKYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6N9</accession>
    <name>A0A0Q8V6N9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Enoyl-CoA hydratase 2</fullName>
            <ecNumber evidence="1">4.2.1.119</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Enoyl-CoA hydratase 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_11940</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a (3R)-3-hydroxyacyl-CoA = a (2E)-enoyl-CoA + H2O</text>
            <dbReference type="Rhea" id="RHEA:26526"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57319"/>
            <dbReference type="ChEBI" id="CHEBI:58856"/>
            <dbReference type="EC" id="4.2.1.119"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.119" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895200.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53093">
        <property type="protein sequence ID" value="KRC53093"/>
        <property type="gene ID" value="ASE19_11940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1563802at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002539">
        <property type="entry name" value="MaoC-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01575">
        <property type="entry name" value="MaoC_dehydratas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC-like" evidence="5">
        <location>
            <begin position="27"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00029334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00030115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="161" mass="17857" checksum="E2A7B107DC5816D2" modified="2016-01-20" version="1">MTVNVTLDHEPSQVRYLDDIVVGTSWVTRGRTITESDVLTFATWSGDMHPLHTDEEYARTSTFGTRVFHGPGALSVAFGLEMSLGWKIGSAIAFLGIRDWTFLAPVFIGDTLHVREQVVEVTPSRTKPDRGVVATKVEVVNQDDVVTQQGIWTVMLSRRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6Z9</accession>
    <name>A0A0Q8V6Z9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_11450</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894933.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53003">
        <property type="protein sequence ID" value="KRC53003"/>
        <property type="gene ID" value="ASE19_11450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1254678at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="24"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="62"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="105"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="130"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="183"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="229"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="269"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="309"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="360" mass="37422" checksum="61BA536A4B19EFF2" modified="2016-01-20" version="1">MSTATATEARTYPAYSRNLAARLLLNREAAVIVGLVAVYLYAMGNVPFFDGPLTIFNLSKEYAPILLMALPMTLIIITGEIDLSVASTLGASAAITGVLVVEHDLSLPLAALVAILVGALLGALNGFFVAYVGLPSLAVTIGSLALYRGLAEGLIQDKRISGFPEGWQDWPTERIGTSQYPNILIPIAVLVVLFALLLHFTSFGRGVFEIGLSDEAAHFSGVNVARTKLVLFTLSGAVAAFAGVYVALKSNSVATDTGNGFELKVIAGVLLGGVSIFGGRGALHGVVAGVLLIAVLNSALQLDGQGSEVIQIIIGLLLVGSVIASNFLPRIRALIPRRAAASTTAPQTPATGDETRKVSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V797</accession>
    <name>A0A0Q8V797_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12060</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895039.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53112">
        <property type="protein sequence ID" value="KRC53112"/>
        <property type="gene ID" value="ASE19_12060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1828423at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000801">
        <property type="entry name" value="Esterase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00756">
        <property type="entry name" value="Esterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="34730" checksum="541F7283452339CF" modified="2016-01-20" version="1">MTHSHVDTVEFEAVDLDHMAMAPEDYSTYSIPPKDVATFELSEDDTSSEYRLTFESLPQEGVPAGQYLHVRWTSHTVYPGVTSSVYLYLPHGAEEAESVNLMVCLDGLSYVGEQVRATTVLDNLVHAGDIPMTIGLFHNPGETGPGYPIYGGTTNRGVEYDTVSEDFARYLAEELFPVIRTRVSLTDDPKGRLICGHSSGGAGAFGAAFHRPDVFGNVITHCGSFINILGANNYPSMVRRAPRKPIRVWHQTGERDADLIYGNIPIANRDLDAALKYRRYDSMFVFGTGGHSLGHAGAALPEALRWIFRDQVEDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7W7</accession>
    <name>A0A0Q8V7W7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Potassium-transporting ATPase ATP-binding subunit</fullName>
            <ecNumber evidence="13">7.2.2.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">ATP phosphohydrolase [potassium-transporting] B chain</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Potassium-binding and translocating subunit B</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Potassium-translocating ATPase B chain</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">kdpB</name>
        <name evidence="14" type="ORF">ASE19_14325</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system and for the release of the potassium ions to the cytoplasm.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>ATP + H2O + K(+)(out) = ADP + H(+) + K(+)(in) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:16777"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.2.2.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="13">The system is composed of three essential subunits: KdpA, KdpB and KdpC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 13">Cell membrane</location>
            <topology evidence="1 13">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="13">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.2.2.6" evidence="13"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53509">
        <property type="protein sequence ID" value="KRC53509"/>
        <property type="gene ID" value="ASE19_14325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008556">
        <property type="term" value="F:P-type potassium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02078">
        <property type="entry name" value="P-type_ATPase_K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00285">
        <property type="entry name" value="KdpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006391">
        <property type="entry name" value="P-type_ATPase_bsu_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43743">
        <property type="entry name" value="PTHR43743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01497">
        <property type="entry name" value="kdpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 13" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11 13" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 13" id="KW-0460">Magnesium</keyword>
    <keyword evidence="12 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 13" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8 13" id="KW-0630">Potassium</keyword>
    <keyword evidence="4 13" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 13" id="KW-1278">Translocase</keyword>
    <keyword evidence="6 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 13" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="26"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="53"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="206"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="238"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="577"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="610"/>
            <end position="629"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="649"/>
            <end position="672"/>
        </location>
    </feature>
    <feature type="active site" description="4-aspartylphosphate intermediate" evidence="13">
        <location>
            <position position="294"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="331"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="335"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="365"/>
            <end position="372"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="383"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="511"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="515"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC53509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="676" mass="70691" checksum="E892FC1F14E95B24" modified="2016-01-20" version="1">MSATIRPETTMLSSLPDALRKLDPRVMVRTPVMFVVEIGAVLCTVLALRDPSVFGWAITVWLWLTVLFANLAEAVAEGRGRAQAATLRRAKTETTARRRRTDGALEAVPATSLRIGDLVVVEAGEVIPGDGDVVEGVASVDESAITGESAPVIRESGGDRCSVTGGTKVLSDEIVVRITTNPGDSFIDRMIALVEGASRQKTPNEIALNILLASLTIIFLAATVTLKPLAIYSGADQSILVLVALLVCLIPTTIGALLSAIGIAGMDRLVQHNVLAMSGRAVEAAGDVNTLLLDKTGTITLGNREAAEFLPVDGTGTALLADAAQLASLADETPEGRSVVVLAKRAHGLRERSAGELPTATFVPFTAQTRMSGVDLAGREIRKGAAAAVVAWVRRNGGQPGDEVGVVVDAIASAGGTPLVVAERRDGGAPHVLGVIHLKDVVKEGMRERFEEMRRMGIRTVMITGDNPLTARAIAEEAGVDDFLAEATPEDKMALIKREQEGGRLVAMTGDGTNDAPALAQADVGVAMNTGTSSAKEAGNMVDLDSNPTKLIEIVEIGKQLLITRGALTTFSIANDVAKYFAIIPAMFAGVYGGLDTLNVMRLSSPESAILSAVVFNALIIVALIPLALRGVRYTPSSASSMLRRNLTVYGLGGLVAPFVGIKLIDLLVSTIPGIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V836</accession>
    <name>A0A0Q8V836_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14380</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896985.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53518">
        <property type="protein sequence ID" value="KRC53518"/>
        <property type="gene ID" value="ASE19_14380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1546927at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="139"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="176"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="212" mass="23209" checksum="B96F508E9D5721E0" modified="2016-01-20" version="1">MTEAVAVRYATPTPIRTADVMAKGLLVAMLLMAVVDPDGSNLRDKAAEARAVGYPLVSFTVPLIWLLAWRERASFPWLADLLVTLTCFTDILGNRMDLYDTIFWFDDLMHFANTGMIAAAVVLLTLHRSAPRYRVVERALAVGATAAIAWEIAEYYAFISGHAEHAFAYEDTLGDLALGVLGSVTAALVIHALWHRGQLSEAAPQLDGRHLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V860</accession>
    <name>A0A0Q8V860_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13465</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895817.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53355">
        <property type="protein sequence ID" value="KRC53355"/>
        <property type="gene ID" value="ASE19_13465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1629654at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="305" mass="34619" checksum="8CC389C99F68FE0C" modified="2016-01-20" version="1">MTPTERLRELALRHAAFAWLDRQRAAGKETFSQEDTSGLSLAGETVRLMPTQQGIWKPGQLAAALSFRTVYRPEGSDRPYDDNVGADGFYRYKMRGDDPDHYQNRALREAMLERLPLIWWLGVQGGGYSALYPIYLVNEERADLQFIVDIDAVPQPDIVWPSVELELDPSYRQQLTKMRLHQRPFRAAVLRAYRTSCAVCSFRHSDLLDAAHIQEDGAGGRPVVTNGLTLCKMHHAAYDRRILGITPDYQVRINDDVLAEVDGPMLRHGIQEFHGKGLMVLPDSPSQRPDRLLLEARYQAFLDAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8L1</accession>
    <name>A0A0Q8V8L1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16985</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893759.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50290">
        <property type="protein sequence ID" value="KRC50290"/>
        <property type="gene ID" value="ASE19_16985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2014094at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0129">CBS domain</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="10"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="70"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="181" mass="18848" checksum="89B278529929F792" modified="2016-01-20" version="1">MSEVLVKDIMSSRPVTVHTHVPLGAAARLLAHHGITAIPVVDQESRVVGVLSEADVIAQTSLTDPVASAMTGTVALVHPETDVAELRRILTVTRVKSVPVVDASDQVVGVVSRSDLVRAFAHDDETLEQDVADVLARARVAGCRVQVRNGVVHLTIPDGALGAAVIDDVVATPGVVAVRVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8M6</accession>
    <name>A0A0Q8V8M6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hydantoinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10920</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53626">
        <property type="protein sequence ID" value="KRC53626"/>
        <property type="gene ID" value="ASE19_10920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1018930at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003692">
        <property type="entry name" value="Hydantoinase_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045079">
        <property type="entry name" value="Oxoprolinase_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11365">
        <property type="entry name" value="PTHR11365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02538">
        <property type="entry name" value="Hydantoinase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydantoinase_B" evidence="2">
        <location>
            <begin position="44"/>
            <end position="579"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="673" mass="72077" checksum="405F9426AE336CA6" modified="2016-01-20" version="1">MSCQTVHNGSAPAAHHHDADTGSRRAPTQFPFGTLTADAGRSADPVLVEIVQGSLAAVEHEVETAIARTSRSPMIRDAHDFRAGIHDRLLRKLTGRSYSALVHPVARDFPIEEMQEGDVFFHNDVYLSEGGIGHLPDLCVTVPVFAGPEGKRRVVAFIQAFGHHDDIGGAVPGSMPSHATSVFEEGLAVPPIKLWDAGVPNRAALTIMTRNSRMPESLAADLDAECSACLMGARRLGELFDRYGTETVESCFDAIIDRSTETYRREILAKIPVGTWTWEDYAEHDGVDEPQLHTQRITLTRTAADDPEGERLVLDFAGTGPQAKGPINHCGDYSDGVFLKKWLAPILRNLADTPERMAELDVNEGVVPLIDMRFPPPGTLLTPVFPAPTNARTFVILRLLGVLAGVLAKAVDGRMPADQETIRYTGVYGEDLEGRSYLMREVLGGGSGGRYYADGEDTIHVVPDSRNLPTEFTESRFPFVVESLGLALDSGGAGQFRGGLGYEKHIRMLKDAHFMSIADRSILACWGVKGGKAGRPFQVTIDPGGPNERDVDALADAEPVVAGETIRIRTTGGGGWGNPLERDPALVVRDVVWRKVSPEAALADYGVVLTGELADDPSTGSGQAELGYDAAATASERASRPVPAADDAFFDRGPGYGTLSGGASAAAVDLLGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V939</accession>
    <name>A0A0Q8V939_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10445</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895172.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53620">
        <property type="protein sequence ID" value="KRC53620"/>
        <property type="gene ID" value="ASE19_10445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2051456at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="53"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="127" mass="13406" checksum="A9DF27DB6E520607" modified="2016-01-20" version="1">MEFYQSVLGGELNVMTFADMGGTAAAAAEADGEADWVMHAALSVSDSVLLMGADHPKHVPGEPQTQQVSISGPNEDGDTLRAWWAGLSEGATVMQPLEQAPWGDSFGMLRDKYGVDWLVNIAGAPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9C0</accession>
    <name>A0A0Q8V9C0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07625</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53941">
        <property type="protein sequence ID" value="KRC53941"/>
        <property type="gene ID" value="ASE19_07625"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="75" mass="8472" checksum="49E9E3575AF330E8" modified="2016-01-20" version="1">MWDPPTCSQDVREAREAELEAAAADDRRRRIDELLHEQFCRDAWIGEDEAGRPKPCPVCHAGVSERLARSRGVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9H7</accession>
    <name>A0A0Q8V9H7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_07490</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 'GDXG' lipolytic enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53916">
        <property type="protein sequence ID" value="KRC53916"/>
        <property type="gene ID" value="ASE19_07490"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002168">
        <property type="entry name" value="Lipase_GDXG_HIS_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033140">
        <property type="entry name" value="Lipase_GDXG_put_SER_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01173">
        <property type="entry name" value="LIPASE_GDXG_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01174">
        <property type="entry name" value="LIPASE_GDXG_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Abhydrolase_3" evidence="4">
        <location>
            <begin position="113"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="343" mass="36197" checksum="592D2C6435EF7BD6" modified="2016-01-20" version="1">MNLRATAESVALKSLMGLPAAAQRVIAGKALVLDGQTLATDLQVMLRLQQLARRGELGVPDIERGRADLRANAGLVGGDQPIGAVRELTVAGLPARHYLPHGARPASEAQPLLVFFHGGGFLYGDLDSHDAPCRLLAEESGVPVLAVEYGVGPERPFPGGFDDAFAALRWVHDNAAELGVDPTRIGVAGDSAGGNIAAFTALAAARAGVPLAFQLLIYPCTDARRATESLRLFGEGLYLTAESIAMFNEIYLPTPADLADERVNLLGVEVPAGLAPAYVVTAGFDPLRDEGEAYARKLADAGVEVELRRFVDQIHGFLNILGVGRSSRAAVLEIAGRLRVALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9V2</accession>
    <name>A0A0Q8V9V2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH OST-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15260</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896506.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51440">
        <property type="protein sequence ID" value="KRC51440"/>
        <property type="gene ID" value="ASE19_15260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="990092at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041966">
        <property type="entry name" value="LOTUS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021139">
        <property type="entry name" value="NYN_MARF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025605">
        <property type="entry name" value="OST-HTH/LOTUS_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01936">
        <property type="entry name" value="NYN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12872">
        <property type="entry name" value="OST-HTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51644">
        <property type="entry name" value="HTH_OST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH OST-type" evidence="2">
        <location>
            <begin position="163"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="241"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="28419" checksum="495190D46AEB56E9" modified="2016-01-20" version="1">MTDTRLAVLIDADNTSHRYVADLLVELAKYGRPTVKRAYGDFTSEGLRNWKTKLNRHAISPVQTFAYTTGKNSTDSALIIDAMDLLYSGNVDAFTIVSSDSDFTRLATRLRESGTTVYAVGRSNTPAAFQEAVDQFIRLELLDSAPEDASPQEEPEPAGDAPVLPNLQSLLTRGVNNASGDDGWVSLGALGNYLRTAYPSFDTRSYGFAKLVDLVQAQGFLTTEGSGNAVRVSVKGRPVAKKAAPQVATKATTKKAAAKKPPKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Y0</accession>
    <name>A0A0Q8V9Y0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894619.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52681">
        <property type="protein sequence ID" value="KRC52681"/>
        <property type="gene ID" value="ASE19_09620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1983082at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="16991" checksum="8B28736D15B25029" modified="2016-01-20" version="1">MQAPLDLRAVGYLHPDAVALVARVQGEYVERYGSPDESPVDPTVFDPPEGLFLVGYDGPVPVATGAWRVSPVRALGGSSAVEVKRMYVVPEHRGRGLARAVLAALEASVRAAGHDLVVLETGLKQPEAIGLYLAEGYVEIEGFGFYAGEPLSRCFGKRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA16</accession>
    <name>A0A0Q8VA16_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Type III pantothenate kinase</fullName>
            <ecNumber evidence="6">2.7.1.33</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">PanK-III</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Pantothenic acid kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">coaX</name>
        <name evidence="7" type="ORF">ASE19_07980</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>(R)-pantothenate + ATP = (R)-4'-phosphopantothenate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16373"/>
            <dbReference type="ChEBI" id="CHEBI:10986"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29032"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.33"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>NH4(+)</name>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
        </cofactor>
        <cofactor evidence="6">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
        <text evidence="6">A monovalent cation. Ammonium or potassium.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 1/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the type III pantothenate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.33" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895438.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54006">
        <property type="protein sequence ID" value="KRC54006"/>
        <property type="gene ID" value="ASE19_07980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2039419at2"/>
    <dbReference type="UniPathway" id="UPA00241">
        <property type="reaction ID" value="UER00352"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004594">
        <property type="term" value="F:pantothenate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01274">
        <property type="entry name" value="Pantothen_kinase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004619">
        <property type="entry name" value="Type_III_PanK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34265">
        <property type="entry name" value="PTHR34265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03309">
        <property type="entry name" value="Pan_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00671">
        <property type="entry name" value="baf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="4 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0630">Potassium</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="106"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="7"/>
            <end position="14"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="257" mass="27079" checksum="A2A3D89CBEF7BB9D" modified="2016-01-20" version="1">MTLLAADIGNAHTVLGLLEDGEVVADWRVSTNEHRTPDEWAVLLRGLLGRREAEVTGVAVCATVPSVLNAWREMLGGHFPDVPRVIVEPGIRTGVPIAVDNPREVGSDRIINALAAASDFGGPAVVVDFGGTATTFDVVDPAGRYVGGAITPGIEISLEALSRGGAQLRMVELVRPRGVIGKNTVEALQSGMVFGVASQVEGMVERLAAALDVPRDEVTVIATGYLAPLVLDECRCFTAHAPWLTLRGLGLVYARNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA84</accession>
    <name>A0A0Q8VA84_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_08380</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895502.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54070">
        <property type="protein sequence ID" value="KRC54070"/>
        <property type="gene ID" value="ASE19_08380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="856767at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038766">
        <property type="entry name" value="Membrane_comp_ABC_pdt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30287">
        <property type="entry name" value="PTHR30287"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="257"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="301"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="354"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="405"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="430"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="475"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="717"/>
            <end position="738"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="759"/>
            <end position="787"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="807"/>
            <end position="827"/>
        </location>
    </feature>
    <feature type="domain" description="MacB_PCD" evidence="8">
        <location>
            <begin position="25"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="7">
        <location>
            <begin position="742"/>
            <end position="834"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="842" mass="87788" checksum="6C07846CBF74CAD8" modified="2016-01-20" version="1">MSRTSVVAPIVRMVRWRLWKHPLRSALTIVGISAGVTLMVVVQAVNATLQAPFDGYAKQLFGDATLQVDAQSPSGVDQKVVTDLRRVRGVEVVAPMIERSAVLYAGRESHDVPLLGIDQAFSELGGTFSQTMPNRPTERDLGLYVSERVSEHLNVGVGDRVRIAAGRDPVAVIVVAVVDDDQLGRFAGASFVAAPLGLAQRLAGAGQRIDSALIVTSGEPDTGLRQRIAATVGSQAVVNDLDVQSGMLSEASAISRAAASLLGANCLGVGALLAASAMLLSALERRREVAVIKAIGASRTVIVFGGVFDALFFGVLGAILGTAVGYATFTWTAPQPPAFLTAAFALLPPQRFPAWAPVVGGVSGLVASLGAATYPTLRLVAVDPAEAMRSDGIAQRSDRWPGRTMLVLGLVLSGVTALAAGSGVGRGIPAVALTMCAAAALTIGAVPALLRLAARAPFLGRLFRVAVGQLSARPTQAAAIAVVCTLSTGLLLIVEGVTRSIETATDDLSSALFADADLWVSRDTPQNVYLQEPFDRAWGDRLAAVPGVASADATTTRFLDWDGQLVLAIGAHRVDDTPLPAIRVFAGEHNPFVEEHQPPQALMTASLAKQRDLGLGDEFTVPTPAGRRTLELVTLLPSYGWPPGTVVVDQRTYDRWWPSTAATIVAIQLDPGASRESVKDDVATLVRGAGLRVETASEAQRRSSEVASDGTEVLRQIAAGVGLASVLAVAAVMLLTIAQSRRTHAILLAVGLSRLQLGMSVLIEVASVAVLGVVLGCVAGIAGSALAVRALVESTSYPLHFSVHADLIGKVGLLTVLMVVVSSLAPLNQLRRMSVAEALSND</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAL2</accession>
    <name>A0A0Q8VAL2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08720</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895559.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54127">
        <property type="protein sequence ID" value="KRC54127"/>
        <property type="gene ID" value="ASE19_08720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275789at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="27159" checksum="904ACBB2D1FA46C1" modified="2016-01-20" version="1">MGDEATVLVEDRGAVRIVTLNRPEVKNAINLALRHALADAIEAADADPGVRAIVLTGADGAFCSGGDIATMQRAPRHETTARAQAAQRVVRAIWHTPKPVVAAVEGPAYGAGTALALACDRVVAAADATFATTFTSVGLAGDMGIFSSLPTRVGAARARQMLMLGTKVGGDEAGAVGLVDRVTGAGEALAAALEDAARLAAGPPLALGVIKQMLSGEPRHPLAVLDLEVRNQTMLWDSDDFAEGVSAFAEKRRPVFGATTTQES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBG2</accession>
    <name>A0A0Q8VBG2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lactate utilization protein C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11405</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894925.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52995">
        <property type="protein sequence ID" value="KRC52995"/>
        <property type="gene ID" value="ASE19_11405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1580190at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024185">
        <property type="entry name" value="FTHF_cligase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003741">
        <property type="entry name" value="LUD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02589">
        <property type="entry name" value="LUD_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LUD_dom" evidence="1">
        <location>
            <begin position="113"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="213" mass="22035" checksum="62162CE069A629A9" modified="2016-01-20" version="1">MGEVRAPRASARDEILGRVRSALQGVEPVTTPVVAPPGAAAPASVGLVDHFAERVADYRAVVVHCPPDGLAAAVAAALPEGARVVVPDGLPDAVLAGITAPVRDAGLSAAELDAVDAVVTCCRVGIAETGTIVLDHEPDQGRRALTLVPDRHVCVVYADQVVADVPDAFPLLDPRRPLTWVSGPSATSDIELDRVEGVHGPRHLHVIVVDEPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBL4</accession>
    <name>A0A0Q8VBL4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATP-dependent DNA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15360</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896523.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51458">
        <property type="protein sequence ID" value="KRC51458"/>
        <property type="gene ID" value="ASE19_15360"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2061599at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="325"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="345"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="363" mass="40735" checksum="35F4A67B9ACBC24D" modified="2016-01-20" version="1">MAKTAAAMVQAGEREVRVSSPDRVIYEATDRTPEVTKLMVAQFFVAVEDGLLRALRDRPTALERWPDGYREGFRLSTGYGDDGEGFYQKRVPKGAPDYLEPVGITFPSGRTAEEICVTEIAVPVWCAQMGTLTFHPWPVRRSDVDRPDELRIDLDPQPGTGFGDAVRVAGVADELLRELGLVGFPKTSGNRGVHVYVRIEPRWSFEDVRHAAIAFGRELARRDDQVTTAWWKEERGERIFVDFNQNNRDRTIASAYSLRPKPGAPVSTPMTWAELATVTDPRDFNLFTVTERVADGDPWSGIDDTSYSLQPLLDLWQQQVDAGEGELNFPPDYPKMAGEPPRVQPSKKVAEHWDEQGNRVEGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC73</accession>
    <name>A0A0Q8VC73_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Acetyl-CoA acetyltransferase</fullName>
            <ecNumber evidence="6">2.3.1.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_05210</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.9" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894219.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54862">
        <property type="protein sequence ID" value="KRC54862"/>
        <property type="gene ID" value="ASE19_05210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="330994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003985">
        <property type="term" value="F:acetyl-CoA C-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020610">
        <property type="entry name" value="Thiolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00099">
        <property type="entry name" value="THIOLASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="5">
        <location>
            <begin position="280"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="2">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="359"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="404" mass="42629" checksum="0A6A95BBF5FE7E13" modified="2016-01-20" version="1">MPEAVIVSAARTPIGRANKGSLKDFRPDDLTAFIAQAALDKVPALDPKDVDDFYLGVGLPGGEAGNNMARIVTTLMGTEIPGATITRYCSSSVQTSRMAFHAIKAGEGDVFISAGVETVSRFQFGTSDHIPNTKNPLFADAQQRTEKYAEGGQVWHDPREDGLLPDIYIAMGQTAENVASIRGLKREDLDAFGARSQNLAEKAINDGFWEREITPVTLADGTVVSKDDGPRAGVTYEALSQLQPVFRPDGVVTAGNCCALNDGAAAVVIMSDTKAAELGLTPLARIVSTGVSGLSPEIMGLGPVEATRNALKYANMTIDDIDLAEINEAFAAQVLPSAEDLGIPIEKLNVNGGAIAVGHPFGMTGARLQNTLINSLQWHDKSTGLITMCVGGGQGMAMILERLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC78</accession>
    <name>A0A0Q8VC78_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12985</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895729.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53267">
        <property type="protein sequence ID" value="KRC53267"/>
        <property type="gene ID" value="ASE19_12985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1972497at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004721">
        <property type="term" value="F:phosphoprotein phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016311">
        <property type="term" value="P:dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026893">
        <property type="entry name" value="Tyr/Ser_Pase_IphP-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016130">
        <property type="entry name" value="Tyr_Pase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13350">
        <property type="entry name" value="Y_phosphatase3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="SSF52799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00383">
        <property type="entry name" value="TYR_PHOSPHATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="252" mass="27387" checksum="CA783763A2C0AB7A" modified="2016-01-20" version="1">MSANDEYLRLASADNFRDVAGTGYATVDGGRLRTGVFFRSNDLRLTDVDLTALQAIGLRAIIDLRSPTEIALHPDPEVPGAEPLHFDSIGIPIERLSSLTSRAEAVALMDEVYRGFVDQERCRVAFGGVLRQLATGGPQLFHCSQGKDRTGWVAALLLHIAGVDDPTIQSDYLLTNASSAASRARVEAEIEKHGGPELVAVYEPTLVVAMEYLDTAWTAVEERYGDRATYLREGLGLDEATLATLRGLLRAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCB0</accession>
    <name>A0A0Q8VCB0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SCP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14095</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897038.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53465">
        <property type="protein sequence ID" value="KRC53465"/>
        <property type="gene ID" value="ASE19_14095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1705869at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.33.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014044">
        <property type="entry name" value="CAP_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035940">
        <property type="entry name" value="CAP_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00188">
        <property type="entry name" value="CAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55797">
        <property type="entry name" value="SSF55797"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359896" description="SCP domain-containing protein" evidence="1">
        <location>
            <begin position="26"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="SCP" evidence="2">
        <location>
            <begin position="50"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="17343" checksum="97BB48AE5AE6E31D" modified="2016-01-20" version="1">MKTFVRPAAAGLLASAALAAGPTPAAPLAGAAAPTLRVSAVNTDYERAVLSRVNRVRARHGLPALRASSCLDVFAERRARRLAAERILVHFGLGAVFDRCGGSMMGENLARGRYLTATRVVEAWLRSPGHRANVLRSGFRSAAVGAWRVSDGTIYVSMVYRAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCC9</accession>
    <name>A0A0Q8VCC9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">PbrT family lead (Pb2+) uptake porter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_05505</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the EfeM/EfeO family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894171.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54910">
        <property type="protein sequence ID" value="KRC54910"/>
        <property type="gene ID" value="ASE19_05505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1430947at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd14656">
        <property type="entry name" value="Imelysin-like_EfeO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1420.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028096">
        <property type="entry name" value="EfeO_Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018976">
        <property type="entry name" value="Imelysin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034981">
        <property type="entry name" value="Imelysin-like_EfeO/Algp7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038352">
        <property type="entry name" value="Imelysin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13473">
        <property type="entry name" value="Cupredoxin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09375">
        <property type="entry name" value="Peptidase_M75"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359903" evidence="3">
        <location>
            <begin position="20"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="domain" description="Cupredoxin_1" evidence="5">
        <location>
            <begin position="18"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M75" evidence="4">
        <location>
            <begin position="146"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF09375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="397" mass="42847" checksum="A3CD62AE9B6325E9" modified="2016-01-20" version="1">MRTMILASVAALAAVPALAACTENATDDPGKGGDSRALTVTSSDDACELSAVEAPSGTLTFNVTNAGSDVTEFYLLGSDGLRIVGEVENIGPNLTKKLTVNVPEGDYFTACKPGMVGEGIRAKFAVAHSDDEQEVSASDQELIDQAQANYRAYVQDQSAQLLEKTKQFVQLYEDGKDDEARALYPQAREHWERIETVAESFGDLDPKTDAREADVDFAAGEKWTGWHRIEKDLWPQDAEAGYRALTAKERATYGDDLLANTTELDGRIRATGTDALTYPIDAIANGSIGLLEEVANGKITGEEEAWSHTDLWDFQANVDGARVAFEGVQPLLEAKDAVLSEELATKFKALDELLDGYRDGDGFVLYGELTAEDKKKMTDAVNALSEPLSQLTAAVTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCH2</accession>
    <name>A0A0Q8VCH2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05685</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894137.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54942">
        <property type="protein sequence ID" value="KRC54942"/>
        <property type="gene ID" value="ASE19_05685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1669505at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359906" evidence="1">
        <location>
            <begin position="35"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="307" mass="31454" checksum="6544EDB73E07B694" modified="2016-01-20" version="1">MQVRKKVGATLVALLSGIVAVLAASLVVVPAAHAASHSAALVVKGPNGSAYTAGHAVSLAGKEGAVLAYTFQVRNTGTTLAQYRIDIQDWAGAQAQLYDGTLLLKPLASSPDGYYTKALPPGGNQTLTVKIPIPVGTDAYEHYSTVNLYATDGAFIDSVFLVAEEPALLAGATSADLFLKNGSQLAVGGPGRTNQIVTAPTISGTQVATFTVTLQNSTAPSASIGFRLDNSYACGQVVTVKDGALDVTAAALAGTYLSPPLAKLGKRNLTVTVKNVASCAYVQLYARAKMPGGSFLQASVLEVNRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCZ4</accession>
    <name>A0A0Q8VCZ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carbon monoxide dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06665</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894511.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55109">
        <property type="protein sequence ID" value="KRC55109"/>
        <property type="gene ID" value="ASE19_06665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1017413at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005107">
        <property type="entry name" value="CO_DH_flav_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036683">
        <property type="entry name" value="CO_DH_flav_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002346">
        <property type="entry name" value="Mopterin_DH_FAD-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03450">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00941">
        <property type="entry name" value="FAD_binding_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01092">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55447">
        <property type="entry name" value="SSF55447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="285" mass="29863" checksum="BBC6DDD6E03769F3" modified="2016-01-20" version="1">MIPAAFEYVAPTSVEEALAALAEHGDDAKIIAGGQSLLPVLRMRLNAPEWVIDLGRIDSLRGVRDEGDHLVIGAMTTHHDVGQDPLVHEHALLISKAITHLADAQVRHRGTFGGALAHADPAGDLGAPARALGATFVAQGPGGSREISAEDFFVDLFETALSDDEILTAVKVPKYDGWGATYEKFVRIAHQWPIVAVAATVRMDGDTIAEARIGLTNMGSTPLRAQAAEQALVGQPATEEGVAAAAALAAEGTNPPSDLNGDADYRRHLATVLTRRAVLSAAGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCZ5</accession>
    <name>A0A0Q8VCZ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14500</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896964.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53539">
        <property type="protein sequence ID" value="KRC53539"/>
        <property type="gene ID" value="ASE19_14500"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359917" evidence="1">
        <location>
            <begin position="28"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="16418" checksum="0AE2BDC648420281" modified="2016-01-20" version="1">MKKLAALVLLLAAPFLAACQDDEEVGAKPPASPPLTKAQLIKQADAICRDGSKEFAATAAPVPRNPTRAQLRAYVEDVLIPEMDSQLAALRALEPPRADVPRIDQMLDEWQEAVEKIKADPLKEVVRMKVLTARGDRIATKYGFKVCNQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD28</accession>
    <name>A0A0Q8VD28_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Flagellar motor protein MotA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_09300</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MotA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52624">
        <property type="protein sequence ID" value="KRC52624"/>
        <property type="gene ID" value="ASE19_09300"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000540">
        <property type="entry name" value="Flag_MotA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002898">
        <property type="entry name" value="MotA_ExbB_proton_chnl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01618">
        <property type="entry name" value="MotA_ExbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01307">
        <property type="entry name" value="MOTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0966">Cell projection</keyword>
    <keyword evidence="10" id="KW-0969">Cilium</keyword>
    <keyword evidence="10" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="7"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="29"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="146"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="182"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="domain" description="MotA_ExbB" evidence="9">
        <location>
            <begin position="102"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC52624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="256" mass="26871" checksum="11E662641F6027EA" modified="2016-01-20" version="1">MKDIATPVGIGLGLVIIVVANVLEGGNPMSLILLPPMLLVLGTTVMVTVAGGTMADAKAAIKNIKRAISGAVEPADTLVPQVVTLAERARREGLLALEDSLREIDDPFLVKGVTMAIDGTDPEDVRDILEAELRAKKRDDKQAAKFFSDAGGYAPTIGIIGTVMGLVHVLENLASPEELGHLIAGAFVATLWGVMSANVVWLPIASRLKRLGELECARMELAIEGVSAIQSGANPRLVAEKLRSLLPTGTAEQEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD92</accession>
    <name>A0A0Q8VD92_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptide deformylase</fullName>
            <shortName evidence="2">PDF</shortName>
            <ecNumber evidence="2">3.5.1.88</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Polypeptide deformylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">def</name>
        <name evidence="3" type="ORF">ASE19_04860</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + N-terminal N-formyl-L-methionyl-[peptide] = formate + N-terminal L-methionyl-[peptide]</text>
            <dbReference type="Rhea" id="RHEA:24420"/>
            <dbReference type="Rhea" id="RHEA-COMP:10639"/>
            <dbReference type="Rhea" id="RHEA-COMP:10640"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:49298"/>
            <dbReference type="ChEBI" id="CHEBI:64731"/>
            <dbReference type="EC" id="3.5.1.88"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="2">Binds 1 Fe(2+) ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the polypeptide deformylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.88" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894413.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55128">
        <property type="protein sequence ID" value="KRC55128"/>
        <property type="gene ID" value="ASE19_04860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1649129at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042586">
        <property type="term" value="F:peptide deformylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00487">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00163">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023635">
        <property type="entry name" value="Peptide_deformylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036821">
        <property type="entry name" value="Peptide_deformylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10458">
        <property type="entry name" value="PTHR10458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01327">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004749">
        <property type="entry name" value="Pep_def"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01576">
        <property type="entry name" value="PDEFORMYLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56420">
        <property type="entry name" value="SSF56420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="188" mass="20070" checksum="3A45604C72A9DEF2" modified="2016-01-20" version="1">MSPEQGSARLAAWTEAELGVEGRVLDVVRAPAGVLSARGDDVDPTSAETVQLAADLVATMRVSPGCVGLAANQVGVGVRVFCVDVTEHPKSRTLHGTFVLCNAEVVESSRNERAREGCMSVPDFTGDVKRASRLTVRGFLPGTGEEVVFATDAFEARALQHEIDHTDGFLFLDRVAGAHAIHPRQTYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDC9</accession>
    <name>A0A0Q8VDC9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AAA family ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894501.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55099">
        <property type="protein sequence ID" value="KRC55099"/>
        <property type="gene ID" value="ASE19_06610"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011703">
        <property type="entry name" value="ATPase_AAA-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07726">
        <property type="entry name" value="AAA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="51"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="332" mass="34727" checksum="78A5820380EE5853" modified="2016-01-20" version="1">MTEMTYGTPPPPPPAGDGALRERLLAVRQEVAKAVVGQDAAVSGLLVALLCGGHVLMEGVPGTAKTLLVRTLASSLSVQTRRVQFTPDLMPGDITGSLVIDSSAGELSFREGPIFTNLLLADEINRTPPKTQSALLEAMEEGQVSADGVTRPLPRPFLVAATQNPVEFEGTYPLPEAQLDRFLLKVVLPVPPRDDEVTILTRHAAGFDPRDVAGAGVTAVASGADIEAAQAAAKTVQVSPEVAAYIVDIARATRQSPSLSLGVSPRGATALLRAARAWAWLSGRDFVTPDDVKALAQAALVHRLGLRPEAELEGVDVAQVLASAIASVPVPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDX4</accession>
    <name>A0A0Q8VDX4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895408.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53977">
        <property type="protein sequence ID" value="KRC53977"/>
        <property type="gene ID" value="ASE19_07835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1843160at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="327" mass="35379" checksum="76710F0616F2DA29" modified="2016-01-20" version="1">MNRSITDADVARLPIREGRAELLEEIMSLSTESAPEVTAPPRRHRWLPALAAAASVAAVVGGVVWLGEQKQQDRIEPAPAPAGSGDRAVLEQSGWTVGNVDDDPRWGGEISYQQGDRDLSIHWRLAAEYDDYVADRSDIGTPEQVDLLGKESKMWAYNATDHTVIRPVEGAYTLEVRGSGMDESAFRALLDDLVLVDRAGLQDALPAEAVTDAERPGVIADMLAQLPLPQGFDRASVPSDALAMYHLTARVTGTVTCAWIDEFARAKKDGDSAGMQAAQDALASSRTWAPLKAIVDEGDWSEVVWDFAAQVGRGKVPLEYREGLGCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFH0</accession>
    <name>A0A0Q8VFH0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12790</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895696.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53233">
        <property type="protein sequence ID" value="KRC53233"/>
        <property type="gene ID" value="ASE19_12790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="49"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="132"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="354" mass="38150" checksum="D1C3B69AA09ABBA3" modified="2016-01-20" version="1">MSRPDRISPEKRRERNDLIKFSAFLAVAAVFTVWVAVVTGEVRPGDRDAYKAVFEDVSGLAVGDEVRIAGVDVGKVKEIDVQADNTVLVTFDVRRGQQLTTGTKATIQYRNLIGDRVVQLTRGEKDGADGGEELAVGGTIPAAQTASALDLDTLLNGFKPLFAGLSPTQVNELSGQLIQVLQGQQASVATLVDHVASFTTTIGNREELIGQVIRNLNSVLGTVDDRKQTVGLLLDRLDALLTGLDKQDTQVLDAAARISAFADRTSTLVTRARGDLRADLQGLAVSARGVNKNAGALDALLKKLPSHYDKIQNTASYGNFFNFFLCGVRIQTGLTKGQPVLTPWIYSDTPRCKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG60</accession>
    <name>A0A0Q8VG60_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14390</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896983.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53520">
        <property type="protein sequence ID" value="KRC53520"/>
        <property type="gene ID" value="ASE19_14390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2103631at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="71" mass="7330" checksum="DD60DA366B9220EB" modified="2016-01-20" version="1">MSDLLQLVPIYAFMLIPVWIPMAAVAFGALIDVVKAPAKVVAHHPSTAPAHSAGRRISSAGPRVAAAGTSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGR2</accession>
    <name>A0A0Q8VGR2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12300</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895081.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53154">
        <property type="protein sequence ID" value="KRC53154"/>
        <property type="gene ID" value="ASE19_12300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="25"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="48"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="216" mass="23634" checksum="8599952C506B9C0C" modified="2016-01-20" version="1">MENAAAAAPAPRRRYGGKSAEQRRSERREALVAAALEIWQESGWAAVTMRGVCARAGLTDRYFYESFSDRDALLATLWDQMRDETLAMMLAAIAPHADEGPLDQLHAALSAVVHHIGDEPQRAQIVFGDHAGSAVLEQRRRETIQLAVTLMIDLARPYLRDDIDEVGFRVAVLTGIGGFVETMLAWRSGLIEADTDQLVEHLAAVGAGLAPQFLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGY8</accession>
    <name>A0A0Q8VGY8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02220</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892682.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56664">
        <property type="protein sequence ID" value="KRC56664"/>
        <property type="gene ID" value="ASE19_02220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="21"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="102" mass="11412" checksum="DFD408E445A9FE3F" modified="2016-01-20" version="1">MPAADHLPDFAERAKLFGEKVRQRRNELGLTERDLIERTGLSRGYIQLLLNNRGGHKDPSTGLYKPVNPTLDVIWRLADALELDPTYLVDNGRGVEADAGRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHD8</accession>
    <name>A0A0Q8VHD8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06965</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895255.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53824">
        <property type="protein sequence ID" value="KRC53824"/>
        <property type="gene ID" value="ASE19_06965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1994048at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="96" mass="10475" checksum="D582B43C5FCBE97A" modified="2016-01-20" version="1">MVSFLLSVTFACGVIIALAHVVNVRFVAPVYDVVANLTAFASAVAASVMLDHWIPAGLSTVAFVCWILLARRTFRVLRDRRADQSGEELAASRRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHL2</accession>
    <name>A0A0Q8VHL2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03365</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892877.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56860">
        <property type="protein sequence ID" value="KRC56860"/>
        <property type="gene ID" value="ASE19_03365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="404807at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00367">
        <property type="entry name" value="PTS-HPr_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000032">
        <property type="entry name" value="HPr-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035895">
        <property type="entry name" value="HPr-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001020">
        <property type="entry name" value="PTS_HPr_His_P_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00381">
        <property type="entry name" value="PTS-HPr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00107">
        <property type="entry name" value="PHOSPHOCPHPR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55594">
        <property type="entry name" value="SSF55594"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01003">
        <property type="entry name" value="PTS_HPr_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51350">
        <property type="entry name" value="PTS_HPR_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00369">
        <property type="entry name" value="PTS_HPR_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HPr" evidence="1">
        <location>
            <begin position="1"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="86" mass="8495" checksum="6A6DD886D5E28186" modified="2016-01-20" version="1">MHTVTVTVGSAVGLHARPAAIISEAAAELDSEVLLGVPGDEAVDASSALLIMTLGAGNGDQVEVSGEVEADVAAIAALVEQDLDAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHL8</accession>
    <name>A0A0Q8VHL8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04095</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893007.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56990">
        <property type="protein sequence ID" value="KRC56990"/>
        <property type="gene ID" value="ASE19_04095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041664">
        <property type="entry name" value="AAA_16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041617">
        <property type="entry name" value="TPR_MalT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13191">
        <property type="entry name" value="AAA_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17874">
        <property type="entry name" value="TPR_MalT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="17"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="950" mass="101126" checksum="9BB14D322CCBB280" modified="2016-01-20" version="1">MPRSPVEPNAHTFASVLRRGRERAGLTQAELAGRAGVGVRTVSNLERGINTSPYPSTVRLLADALEVSDSSRDELMAAAARRPATTDPPAGGHLGAKAPTPLVGRYDERAAITHALESAARGEGSVVLLAGEPGIGKTRLAQEAMADAVARGFLVAGGRCFEQQADVPFVPLLEAFAALHHGCATALRDGLGDRWPALATLLPDVLPPAVPADVPDAAHALHRAATAFVRELAAVRPVALVVDDLHWADDASADLLLHLVRHTHRDRFVLLGAYRDAEVGSAHPVRALAHALRRERLTRAVGVGRLDREATTQLVSLHLAEPGVVAEIGDLVHRSSEGNPFFTREIVTALVERGDLTRVDGRWVCRELDGITAPASVSEAIGQRVARLPTTARELLQAASVLGTTFDPDDVPNGIAPDDDALDRGWDDAVASGLLVVAEDGYAFDHSLTQQALHLGMSPVRRRRLHRLVGELLEGRPVATRRRRAAEIARHLEAGGLPERALPYVLLAGEVAAAAYARAEAVRLLGHARELAEEVGDEEAITTSLERTGLVELVAGRYHDALGPLLEAAQRHRRTGDAGALLRVEGMVADVRHRSGDGEAAATRLEEVLEELQLGTAPDAWVDGGAALANGLARVRLYLGQHERCVEATELAARLARLEGSSSAEAQACAVGGTALFFLDRPDDAVRTYERGVTAAASIDAPAWESTCLMGLQWAATIRGELARSRQIGERGLELTQRAGNTDQESQHAAGLGRAHFLEGDEERARHHLERGRELTHAGSPTLFSGIPPLYLGQLCAAQGDVAGAIACFDEAAAAPDLQTFAFAGYLQAQRAGLDLRAGDAAGALARLEPWLGQEAPTKVHDAAILVAATQACLALGDGARARRLAERGLRRAEAIGNRIDRVDLLRLLGRCHRLADRVPEGRQLLDEALDLAVAIGYPAAEARVRAETR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHN2</accession>
    <name>A0A0Q8VHN2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03800</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56936">
        <property type="protein sequence ID" value="KRC56936"/>
        <property type="gene ID" value="ASE19_03800"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="40"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="426" mass="45212" checksum="339AC7F9AE4EF4B9" modified="2016-01-20" version="1">MGEHHRFSALQLGRIFVVLAAVAGALLFQKAQLTAMLRPGDTVSIQFSEAHRLRTSVSDVKMAGVDIGVVRSVEDEKGVTTVEVKVDEGVREAMGTAPSARVRPTTLLGGNYYVEIIPGGRSGTFAGTIPVERTELPVELDGVASAFPADARKGVRTGTKALDETLAKDGTRALRELLDSAPSTLRSTDDVLRALQGTRPDRDLATLVEGGENASTVLSSENAHLGETIDSLATTAKVLDARRHDIAEASRTLPSGLDETSTLLDSLDGVLTSLEDTADPARPSVRELSRLLDHADPVLARARPVVKDLRGVLRDARPLITTLIPISRDLDATVDNVRGPVLDRVNGPVIDQLMSPWHGTGEYAGGGADRPLYKETGYMFSNLAQANMMDENGSMISFLPGIGPGSLAGLPISLEQLFGAVANGDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHN4</accession>
    <name>A0A0Q8VHN4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04185</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57006">
        <property type="protein sequence ID" value="KRC57006"/>
        <property type="gene ID" value="ASE19_04185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009091">
        <property type="entry name" value="RCC1/BLIP-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000408">
        <property type="entry name" value="Reg_chr_condens"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50985">
        <property type="entry name" value="SSF50985"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00626">
        <property type="entry name" value="RCC1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50012">
        <property type="entry name" value="RCC1_3"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360050" evidence="1">
        <location>
            <begin position="20"/>
            <end position="688"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="688" mass="71074" checksum="810C36FD44AFD719" modified="2016-01-20" version="1">MTLALAVAAAISTPTGADGAEPGNGASVMQAWGDNSSGQTDLPSDLRGGLKAVMKISLGHRHGTAVTADKKLYAWGDNSHGEGSVPDYLQNLGAIDVASGWGFNVVLGDDFNARVWGDTPYGLDSVPQAAVDVDLIQVAAGGNHALAKSSGGKVFAWGGNNLGQTDVPTAVKNTTIKSIAAGVGFSLALSSSGKVYAWGTPSYGLSTVPPALEGKTVVQIAAGRSHALALTSDNEIVAWGDNSQGALNVPALAPGDRWTQIAAGDGFSSGVAKDSQTAGVWGSGATGIRQPPPQPSAGSNPVSVAAGGDFLVQGFKRLGVIAAPTVTRVEGVFRVGTPVQASHATFGPDDATVTKTGEWFTVRNDVVIKVGTGMTYTPKATDIGWNLVFRTRAVSTSYGSAYSDTAQAPVKGTLFTSVTRPVITGDAYIGSTLKGSLSSVPAADSYRYDWYADGVYRKTSDTRGEYVVQEADRGKKITLMGYADKAGHERIAAGTSEPTATVLDAPQFQVSMPPMVKGTARVGSMLGVTPAVVSPTPAQTSYQWYRNGQPISGATDSSYRAARADDGRSVGVMLTFAGPGRRDTVAVSPSVTIGKAAPRLIWTAKQGSRSGSKRYVGISVAVSAAGVPSLTGVVKIRDGSKVVKTLTLRRGRASTVVKLARGKRTIKVTYYGTTGVHATSLTRRLNVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHN6</accession>
    <name>A0A0Q8VHN6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07420</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53904">
        <property type="protein sequence ID" value="KRC53904"/>
        <property type="gene ID" value="ASE19_07420"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="330" mass="38367" checksum="0B0313F9227FCC94" modified="2016-01-20" version="1">MFVFNRPDLTRRTLAAIRAAKPERLFVVADGPREGNENDARQCAAVRELIMNEVDWPCQVVPRFAETNRGLDPNIEAGIDWVFSQVDRAIFLEDDCIADPTFFIYCEELLERYRDEKKVWLISGDTHEVPESYFHDYSYDFATWASIWGWASWADRWQAHRKLFNREHVPVDQPGQLVPPQRAVPAPPHPDALVSEAGKRHFTKVSTDVDPSSYFWDHHWWVTIINQNGLSAVPRHNLIENDGYGEGASNTRAQKDSIPARPLELPLRHPPAVERNRKVEEELELIMVRTDSWISRVARAIIRPLWLRAIVRKIITQPVIWRLVRKVLNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHV5</accession>
    <name>A0A0Q8VHV5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PadR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03690</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892933.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56916">
        <property type="protein sequence ID" value="KRC56916"/>
        <property type="gene ID" value="ASE19_03690"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1629615at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018309">
        <property type="entry name" value="Tscrpt_reg_PadR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005149">
        <property type="entry name" value="Tscrpt_reg_PadR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03551">
        <property type="entry name" value="PadR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10400">
        <property type="entry name" value="Vir_act_alpha_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PadR" evidence="1">
        <location>
            <begin position="7"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="Vir_act_alpha_C" evidence="2">
        <location>
            <begin position="92"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="20645" checksum="29734D952C7B4421" modified="2016-01-20" version="1">MALEHAILVSLSERAASGSDLVRRFDASIGFFWSATHQQIYRVLGRMEADGWISAEAVPQADRPTKKVYDVTDAGRAELARWIGEPTTPDAMRSSVSVKMRGASYGDRAALLDDLRRQLDEHTKRHSLYEFLAARDFPDPGALSAADLDIYLVLRGGLLMEEFWIRWLTEYVDAHTAGTTKESR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI08</accession>
    <name>A0A0Q8VI08_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LysR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08225</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895477.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54045">
        <property type="protein sequence ID" value="KRC54045"/>
        <property type="gene ID" value="ASE19_08225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1956412at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd02199">
        <property type="entry name" value="YjgF_YER057c_UK114_like_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013813">
        <property type="entry name" value="Endoribo_LPSP/chorism_mut-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035959">
        <property type="entry name" value="RutC-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14588">
        <property type="entry name" value="YjgF_endoribonc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55298">
        <property type="entry name" value="SSF55298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YjgF_endoribonc" evidence="1">
        <location>
            <begin position="5"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="153" mass="15510" checksum="6201314C002DE446" modified="2016-01-20" version="1">MTTPEERLAELGLSVPDVVPPVAAYVPAVRSGAHVFTAGQIPMRDGTLVATGKVGDTATPEQATEAARQCALNALAAIRSVTGTLENLRIVKVVVFVASTPDFTGQPAVANGASELLGQVFGDLGVHARSAVGVAALPLDATVEVEVVAEVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI15</accession>
    <name>A0A0Q8VI15_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04040</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892997.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56980">
        <property type="protein sequence ID" value="KRC56980"/>
        <property type="gene ID" value="ASE19_04040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="83" mass="8623" checksum="A33CE1CC73D485D2" modified="2016-01-20" version="1">MTTTVAAAIRTGSGHDHEIGAPALRTALGNELLRLAAAEDALAAEEASRVAYWEPCPGSVAGHRAAARVLRDNAERLFRSAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI42</accession>
    <name>A0A0Q8VI42_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Diacylglycerol kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_08145</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895465.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54033">
        <property type="protein sequence ID" value="KRC54033"/>
        <property type="gene ID" value="ASE19_08145"/>
    </dbReference>
    <dbReference type="OrthoDB" id="803114at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008839">
        <property type="term" value="F:4-hydroxy-tetrahydrodipicolinate reductase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045760">
        <property type="entry name" value="DAP_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000846">
        <property type="entry name" value="DapB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19328">
        <property type="entry name" value="DAP_DH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01113">
        <property type="entry name" value="DapB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DapB_N" evidence="3">
        <location>
            <begin position="13"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="DAP_DH_C" evidence="4">
        <location>
            <begin position="152"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF19328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="370" mass="39864" checksum="FF99818F6B6BBCEB" modified="2016-01-20" version="1">MSQVIPEKPLRVVVWSTGTIGRHAIAGVDAHPDLELVGVWTSTPDKHGKDAGELAGLGRELGVRATTDRDELIALRPDCIVHGAMTDDRVFESIEDLTEFIRDGVNVVSSGPVILLHRDGTLPPEMIEAIDEAGRQGNASLHVNGIDPGFANDVLPLVMTSLSQRIDHVKVSEIADYSTYYQPVVMRDLFGFGQPLDAKPLLWEPGILTTAWGPVVRVIAAGLGVTLDEPLVEEVTRRPAPRTVSTVSLDVEEGTMGSVLFRVIGTVDGVPRVTLEHVTRTDAQAEPEWPRPHEGDGCYRIEITGEPCMKVEFTHHGENGDHNVSGMIITAQRLINAVPAVVAAEPGLRSALDLPLVTGRGLVAGTKAER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI60</accession>
    <name>A0A0Q8VI60_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SGNH_hydro domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10700</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894804.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52871">
        <property type="protein sequence ID" value="KRC52871"/>
        <property type="gene ID" value="ASE19_10700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1247435at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01823">
        <property type="entry name" value="SEST_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037460">
        <property type="entry name" value="SEST-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37981">
        <property type="entry name" value="PTHR37981"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGNH_hydro" evidence="2">
        <location>
            <begin position="53"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="306" mass="31941" checksum="9C353374DDEE4C05" modified="2016-01-20" version="1">MTKPGSVAERWLLAAVVGVVAATTVGCGDDNPPTVDPTPSAGTSIGPGSRYVALGDSYAAGPELGVDTGSTGCAQTAGNYAHLLAEQLELDLVDVSCGGADSSALTEEHKPVNGPAVPPQLDAVTSDTRLVTLTIGGNDRQIFNRLVTTCIGLGVKDPDGAPCTELVKEFDVPLKDQIEMIADRIDDAVAEIAERAPRARVVVIGYPQVFPARGTCDQLALAKGDYPLAHAIVEQMVRAQRDGAKRGGAEFLDLTDVMAGHDMCSKDPWIAGAAPERDALPYHPYAEEQDAVADLLEKLVSSPRGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIJ7</accession>
    <name>A0A0Q8VIJ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894452.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55043">
        <property type="protein sequence ID" value="KRC55043"/>
        <property type="gene ID" value="ASE19_06280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="2"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="129" mass="13498" checksum="826C44D3ED1F5E38" modified="2016-01-20" version="1">MGITSAAVSLNVPDVAASAAFATDHLGFTEAMAAEGFVSLGHPSVPLHVIFLSTGLPTFKPQEIAGSAGQGTLLVFEVDDIDTEFARISAGGARVVTPPETEPWGERYCQFADPNGIVWQLVQWVSAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIK1</accession>
    <name>A0A0Q8VIK1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Deferrochelatase</fullName>
            <ecNumber evidence="6">1.11.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Peroxidase EfeB</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_05500</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the protoporphyrin ring intact.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>2 H(+) + heme b = Fe(2+) + protoporphyrin IX</text>
            <dbReference type="Rhea" id="RHEA:22584"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:57306"/>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
            <dbReference type="EC" id="4.99.1.1"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="4">
            <dbReference type="Rhea" id="RHEA:22585"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
        <text evidence="6">Binds 1 heme b (iron(II)-protoporphyrin IX) group non-covalently per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the DyP-type peroxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.-" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894396.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55145">
        <property type="protein sequence ID" value="KRC55145"/>
        <property type="gene ID" value="ASE19_05500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="837319at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033212">
        <property type="term" value="P:iron import into cell"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006314">
        <property type="entry name" value="Dyp_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006313">
        <property type="entry name" value="EfeB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04261">
        <property type="entry name" value="Dyp_perox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01413">
        <property type="entry name" value="Dyp_perox_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01412">
        <property type="entry name" value="tat_substr_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51404">
        <property type="entry name" value="DYP_PEROXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0349">Heme</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="1 6 7" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00025737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00033706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00033771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU365017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="423" mass="44475" checksum="8492F802C16BFD9E" modified="2016-01-20" version="1">MSAGGPARVSRRGLLGGGAAAAGVAGAFVAGRVTAPETAPVAGPLASYPFHGVRQAGIVTPAQDRLHFVALDVVTDDRDELVALLKAWTEAAARMTQGGSAGPVGAVDGPVNAPPDDTGEALDLAPSGLTITFGFGPGLFVDADGKDRFGLADRRPEALEALPTFSADVLDPARSEGDLCIQACADDPQVAVHAIRNLVRIGFGTTTVRWSQLGFGRTSTTSTSQSTPRNLFGFKDGTANIKAEEADALDQHVWVGADDDSKAAWLAGGSYLVTRRINMTIEVWDRQPLEGQEQFIGRTKGTGAPLSGGEEFTDPDFDMSGSAGPIIPVDAHVRVVHPDTNDGVRILRRGYNFVDGSNDVGGLDAGLFFIAYLRDPRTHFIPLQRAMSKQDALMEYLRFTGQALFAVPPGVAEGEYVGQALFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIM6</accession>
    <name>A0A0Q8VIM6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">GTP cyclohydrolase-2</fullName>
            <ecNumber evidence="5">3.5.4.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">GTP cyclohydrolase II</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ribA</name>
        <name evidence="7" type="ORF">ASE19_24110</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>GTP + 4 H2O = 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + formate + 3 H(+) + 2 phosphate</text>
            <dbReference type="Rhea" id="RHEA:23704"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58614"/>
            <dbReference type="EC" id="3.5.4.25"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 1/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GTP cyclohydrolase II family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.25" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57418">
        <property type="protein sequence ID" value="KRC57418"/>
        <property type="gene ID" value="ASE19_24110"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00275">
        <property type="reaction ID" value="UER00400"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003935">
        <property type="term" value="F:GTP cyclohydrolase II activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00641">
        <property type="entry name" value="GTP_cyclohydro2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10990">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00179">
        <property type="entry name" value="RibA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032677">
        <property type="entry name" value="GTP_cyclohydro_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000926">
        <property type="entry name" value="RibA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036144">
        <property type="entry name" value="RibA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00925">
        <property type="entry name" value="GTP_cyclohydro2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142695">
        <property type="entry name" value="SSF142695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0686">Riboflavin biosynthesis</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="GTP_cyclohydro2" evidence="6">
        <location>
            <begin position="21"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="5">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="68"/>
            <end position="72"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="110"/>
            <end position="112"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC57418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="219" mass="23712" checksum="0AC2423C08FA8562" modified="2016-01-20" version="1">MLRAPAPVAAIRTQVVVPLRFPDGYATTADVVTFEGLVDGKEHLLLGLGSWRERIAALPDGGTAPLVRPHSECLTGDVFGSERCDCGPQLREAVERIADEGGFLLYLRQEGRGIGLYAKLDAYALQDAGLDTYEANLALGRGEDERDYRAAAQMLRAVGADRIRLLSNNPDKAAQLAEHGVGVDERVPTGVHLSEANRRYLTVKRDHTAHTLDLGELSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJS4</accession>
    <name>A0A0Q8VJS4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13530</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895829.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53367">
        <property type="protein sequence ID" value="KRC53367"/>
        <property type="gene ID" value="ASE19_13530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1670845at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="202" mass="22840" checksum="0009535A841BDDA6" modified="2016-01-20" version="1">MGTHLIGAYGLHWKRSEVDWFPGNGYNWQMLGRIGSVRPGLRICDFRYAAGVYVLEKGGRPVYAGVATGKGGFGDRLRPHTKDGTKNWTHFSWFSFDDVLLDEPRKTYPAYPSNWAMVDIREELTKTQMKPVLGELEALLVNLIYDGRLVSNIQRPRFPHAKEWTQVTLGNFGAPGICHRVDPALFAKPGWLVKPPAKLSER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKF2</accession>
    <name>A0A0Q8VKF2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04450</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54737">
        <property type="protein sequence ID" value="KRC54737"/>
        <property type="gene ID" value="ASE19_04450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1967941at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110001">
        <property type="term" value="C:toxin-antitoxin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008201">
        <property type="entry name" value="HepT-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01934">
        <property type="entry name" value="DUF86"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="130" mass="14608" checksum="799B3C2948A3569C" modified="2016-01-20" version="1">MMDRKAAKELAHIEAWFERVVEIVERGRDAYLADALLQEAGDSLMMKLGEAANRLSKLGVLAPAGVEWAIAVANRNFIIHQYDEINRSITWQTLAVDLREWRESLAPLFADACRSLAVKADGSEEPLQRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL20</accession>
    <name>A0A0Q8VL20_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05520</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894168.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54913">
        <property type="protein sequence ID" value="KRC54913"/>
        <property type="gene ID" value="ASE19_05520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2145791at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360140" evidence="1">
        <location>
            <begin position="26"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="127" mass="13897" checksum="1678756ADE1D43BF" modified="2016-01-20" version="1">MTLALLAAIGCTGAVLALVLVLAGAVPTLVWPDEEPLHVRDDRAHDLELTHLTRLVGAQDPTALHREVVRIVDELLGTTAVLAGPAGLDPRAALPEEVRRFVDHPPLDSPDRYRRRLADVLDRLERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLQ0</accession>
    <name>A0A0Q8VLQ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AlpA family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04465</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894424.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55117">
        <property type="protein sequence ID" value="KRC55117"/>
        <property type="gene ID" value="ASE19_04465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2076478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041657">
        <property type="entry name" value="HTH_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12728">
        <property type="entry name" value="HTH_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_17" evidence="1">
        <location>
            <begin position="20"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="82" mass="9016" checksum="A7397DE03CA21C41" modified="2016-01-20" version="1">MKTTSAPETATTTPGGLEPLMSLEELSEYLHVPIKTLYDWRLTGKGPCAVRVGRQLRFFVGDVHDWLASQREQQPGITSSGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMZ2</accession>
    <name>A0A0Q8VMZ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cholesterol oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04065</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893002.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56985">
        <property type="protein sequence ID" value="KRC56985"/>
        <property type="gene ID" value="ASE19_04065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="365211at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00623">
        <property type="entry name" value="GMC_OXRED_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360198" evidence="2">
        <location>
            <begin position="45"/>
            <end position="545"/>
        </location>
    </feature>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="3">
        <location>
            <begin position="150"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS00623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="545" mass="57571" checksum="18374B092BD64DC8" modified="2016-01-20" version="1">MPNATSHPTSNARFTRRKFLATTGAAAGAASLAGPVLGASPARAAAIGNGASVPALVIGTGYGGAVAALRLAQAGVPVEMVEMGMKWDTPGSDGKVFPKVTSPDKRAYWLRTKTKAPVSNFFGFPIDSNIEKYTGVLDAEEFAGITVYQGRGVGGGSLVNGGMAVTPKQSRFSSILPSVDVAEMYNTYYPRANAGLGVGSIDPTWFETAACYQYARVGRKHAQRSGFAWTFVPDVYDWNYMKAEQAGTVTRSALDGQVMYGNDHGKKSLVQTYLASALATGRVNVSPLHRVTSVTPAAGGGYTVSIEQIDTTGAVVGTKTVTAAKVFFAAGSVGTSKLLVKLKATGALPALNNEIGKGWGDNGNVMCGRANHMWDATGTLQSTIPCSGIDNWDAGGAFAEVAPLPTGIETYASLYLSITNTTRRAEFSWNAAASRVDLSWQTAWKQDSITMAKTIFDKINSKEGTIYRTDLFGGYKIWQDGLTYHPLGGAVLNKATDNYGRLPGYPGLYVIDGSLIPGNTSVNPFVTITALAERNIERIIATDVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN22</accession>
    <name>A0A0Q8VN22_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">30S ribosomal protein S19</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsS</name>
        <name evidence="7" type="ORF">ASE19_06565</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uS19 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056750322.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55090">
        <property type="protein sequence ID" value="KRC55090"/>
        <property type="gene ID" value="ASE19_06565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1893906at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00531">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020934">
        <property type="entry name" value="Ribosomal_S15/S19_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002222">
        <property type="entry name" value="Ribosomal_S19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005732">
        <property type="entry name" value="Ribosomal_S19_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023575">
        <property type="entry name" value="Ribosomal_S19_S15_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11880">
        <property type="entry name" value="PTHR11880"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00203">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002144">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00975">
        <property type="entry name" value="RIBOSOMALS19"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54570">
        <property type="entry name" value="SSF54570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01050">
        <property type="entry name" value="rpsS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00323">
        <property type="entry name" value="RIBOSOMAL_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="93" mass="10622" checksum="DB7D518B57A24663" modified="2016-01-20" version="1">MPRSLKKGPFIDGHLLKKVDAENDKGTHNVIKTWSRRSMIIPSMIGHTIAVHDGRKHVPVFISDSMVGHKLGEFAPTRTYRGHVKEDRKGRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN90</accession>
    <name>A0A0Q8VN90_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">ATP phosphoribosyltransferase</fullName>
            <shortName evidence="11">ATP-PRT</shortName>
            <shortName evidence="11">ATP-PRTase</shortName>
            <ecNumber evidence="4 11">2.4.2.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">hisG</name>
        <name evidence="14" type="ORF">ASE19_23220</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10 11">Catalyzes the condensation of ATP and 5-phosphoribose 1-diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>1-(5-phospho-beta-D-ribosyl)-ATP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + ATP</text>
            <dbReference type="Rhea" id="RHEA:18473"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:73183"/>
            <dbReference type="EC" id="2.4.2.17"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="11">Feedback inhibited by histidine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 1/9.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the ATP phosphoribosyltransferase family. Long subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.17" evidence="4 11"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892518.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58968">
        <property type="protein sequence ID" value="KRC58968"/>
        <property type="gene ID" value="ASE19_23220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1419568at2"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00006"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003879">
        <property type="term" value="F:ATP phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00079">
        <property type="entry name" value="HisG_Long"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013820">
        <property type="entry name" value="ATP_PRibTrfase_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018198">
        <property type="entry name" value="ATP_PRibTrfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001348">
        <property type="entry name" value="ATP_PRibTrfase_HisG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020621">
        <property type="entry name" value="ATP_PRibTrfase_HisG_long"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013115">
        <property type="entry name" value="HisG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21403">
        <property type="entry name" value="PTHR21403"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01634">
        <property type="entry name" value="HisG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08029">
        <property type="entry name" value="HisG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00070">
        <property type="entry name" value="hisG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03455">
        <property type="entry name" value="HisG_C-term"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01316">
        <property type="entry name" value="ATP_P_PHORIBOSYLTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11 14" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9 11" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11 14" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HisG" evidence="12">
        <location>
            <begin position="49"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="domain" description="HisG_C" evidence="13">
        <location>
            <begin position="205"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00024861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF08029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC58968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="280" mass="30186" checksum="518F4ADCCFB6CB8D" modified="2016-01-20" version="1">MLKIAVPNKGALSEAASGMLREAGYAQRSESKQLTKLDPDNEVEFFYLRPRDIALYVGEGTLDAGITGRDLLLDSHATAAESLQLGFGRSKFRFAARPGTATSVADLAGKRIATSYDGVVKRYLAEQGIEASVVRLDGAVETSIQLGVADVIADVVETGSTLRNAGLEVFGDVILESEAVMITRQGADEAGLEIFTRRLQGVLVARAYVMMDYDIRAEKVEQAIALTPGIESPTVSPLHREGWVAVRSMVKRATAQRVMDELFALGARAILTTDIHACRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNC3</accession>
    <name>A0A0Q8VNC3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chromosome segregation protein SMC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02445</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893062.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57027">
        <property type="protein sequence ID" value="KRC57027"/>
        <property type="gene ID" value="ASE19_02445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2046838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040891">
        <property type="entry name" value="HEPN_SAV_6107"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18726">
        <property type="entry name" value="HEPN_SAV_6107"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HEPN_SAV_6107" evidence="1">
        <location>
            <begin position="39"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="156" mass="16392" checksum="A7260C237A766B4B" modified="2016-01-20" version="1">MPVVTQQHASSFPVGPDTLPATTHNYLLRSAESLSEAVASIDVATRYACAHVAALRAAAALLSARARPAGPRRRAQKNAWVLLAEVAPEMGEWATFFAAGAAKRAAAEAGSTRAVSEREADDLVRDADRFLALVEQSLGLAPHVPVELRLAGRVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP05</accession>
    <name>A0A0Q8VP05_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Strictosidine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22880</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892573.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58911">
        <property type="protein sequence ID" value="KRC58911"/>
        <property type="gene ID" value="ASE19_22880"/>
    </dbReference>
    <dbReference type="OrthoDB" id="966287at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016844">
        <property type="term" value="F:strictosidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018119">
        <property type="entry name" value="Strictosidine_synth_cons-reg"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03088">
        <property type="entry name" value="Str_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Str_synth" evidence="1">
        <location>
            <begin position="108"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="313" mass="33306" checksum="1E6BA16F5CF42BBA" modified="2016-01-20" version="1">MSNAFTVIPVPGPGAEDVVVATSGPDAGAVFTGTEDGSIFRVGEDGAKVDLVAQTGGRPLGIEFAPDGRLLVCDALRGLLWVDPASGEVELITAEVDGVPMRFCNNAAIADDGTIWWSDSSTRFGIARWKHDFVRNTRTGRLLRRDPDGTVTVVLEGLAFANGVALSADGDFVCVAETGARTVVRHWISGPRAGTRDFLATDLPGYPDNIARGSDGLIWITIASPKDPLVERLQTGPMLLRKLATMLPEALQPKPKQSVRVVAHDTGGALVHDVDVTPADHGASYHMVTGVREHDGRLWMGSLHEPAIAVYDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ25</accession>
    <name>A0A0Q8VQ25_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05840</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894108.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54967">
        <property type="protein sequence ID" value="KRC54967"/>
        <property type="gene ID" value="ASE19_05840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1967886at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="169"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="255" mass="26300" checksum="BE605AE7CDA99157" modified="2016-01-20" version="1">MKDLRRLVVTLVIGSFSIAAVLGIGALLSGGFDDTQARVLGTTVVIGVESTVVLCLLALVGHRWVPLALLGGAASVVATVAALVLVWGDSVWDSDGWEGLLRTFAVSAIVAGTAAQFSLLIALVLRPGREQRSLEGLLLASGITGALVALLAIGPILAEADPGGGYWRLFGVLAILDVLGSVVLIALGGFGRARQGGGRTTVATSAPRPRTTLPAPLDIRLSDEQQRRVSSFALAHGTTPNRVLEAALDAFLPRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ52</accession>
    <name>A0A0Q8VQ52_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Sugar ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_00560</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896780.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59560">
        <property type="protein sequence ID" value="KRC59560"/>
        <property type="gene ID" value="ASE19_00560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1510342at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="7"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="69"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="104"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="137"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="185"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="241"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="69"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC59560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="277" mass="29932" checksum="73779299EF546B33" modified="2016-01-20" version="1">MKNRIGTAVGCLLILVWCLLPVAWIVSLSFKSQEAVKNGSPGFFPADGAGAGWDNYQAVWDNEQFRRAILNSIGISLIATLLSVVVATLAAYAIARLEFRGKKAVLSIALAIAMFPVVSLIGPLFDMWRATGLYDTWPGLIIPYMSFTLPLAIWTLSAFFREIPWEMEQAAQVDGATSWQAFRKVIVPLAAPGVFTAAILTFFFAWNDFVFGISLTSTENARPIPASLSFFVGDDPFNRPASLLAAGAVIATIPIIVIVLIFQRKIVAGLTSGAVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRI6</accession>
    <name>A0A0Q8VRI6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Anti-sigma factor antagonist</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_01890</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the anti-sigma-factor antagonist family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892628.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56610">
        <property type="protein sequence ID" value="KRC56610"/>
        <property type="gene ID" value="ASE19_01890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1864829at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043856">
        <property type="term" value="F:anti-sigma factor antagonist activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.24">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003658">
        <property type="entry name" value="Anti-sigma_ant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002645">
        <property type="entry name" value="STAS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036513">
        <property type="entry name" value="STAS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13466">
        <property type="entry name" value="STAS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52091">
        <property type="entry name" value="SSF52091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00377">
        <property type="entry name" value="ant_ant_sig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50801">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="STAS" evidence="3">
        <location>
            <begin position="2"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="110" mass="11913" checksum="8FF3456B3E208DD3" modified="2016-01-20" version="1">MAHFNEQTDDDLCVIRVAGEVDIASTEEFLALATDGLDRCRHLRLDLSEVSFMDSSGLGILLRIRRLAADSGKRLTLASLGAGTRRILQVTGVHQLFEVEGDTGDVRASG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VTI2</accession>
    <name>A0A0Q8VTI2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nucleotidyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_22850</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892579.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58905">
        <property type="protein sequence ID" value="KRC58905"/>
        <property type="gene ID" value="ASE19_22850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="974296at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018775">
        <property type="entry name" value="RlaP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34817">
        <property type="entry name" value="PTHR34817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10127">
        <property type="entry name" value="RlaP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC58905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="266" mass="29294" checksum="7B5C9CAA81114C79" modified="2016-01-20" version="1">MRSLADDFDPAAVAAIDGRLAGVAAEHGVRVPWAVESGSRAWGFASPDSDYDCRFFFVRPVADYRRLWPPRDVIETPLEGLLDVNGWDLGKAIRLATAGNATVGEWLRSPLVYDGDAAFRDDLLDVVARVGDPARVRRHYLHVGRAQWTRAQEDAGQVRLKRVFYAIRPAVTLRWLDDHAGVPPMNLDELLRQADVPAAVRDELAELRDLKSRTRELGSAPVPVAVARWVAQVFAAEPDRGTPPSSGLRTEAEAGFAALLDRWAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVD2</accession>
    <name>A0A0Q8VVD2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Chaperonin GroEL</fullName>
            <ecNumber evidence="9">5.6.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">60 kDa chaperonin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Chaperonin-60</fullName>
            <shortName evidence="9">Cpn60</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9 12" type="primary">groEL</name>
        <name evidence="9" type="synonym">groL</name>
        <name evidence="12" type="ORF">ASE19_00275</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 11">Together with its co-chaperonin GroES, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9 11">Forms a cylinder of 14 subunits composed of two heptameric rings stacked back-to-back. Interacts with the co-chaperonin GroES.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell surface</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Secreted</location>
            <location evidence="8">Capsule</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Secreted</location>
            <location evidence="1">Cell wall</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9 10">Belongs to the chaperonin (HSP60) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.1.7" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896827.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59513">
        <property type="protein sequence ID" value="KRC59513"/>
        <property type="gene ID" value="ASE19_00275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="265347at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042603">
        <property type="term" value="C:capsule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009986">
        <property type="term" value="C:cell surface"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03344">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.7.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00600">
        <property type="entry name" value="CH60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018370">
        <property type="entry name" value="Chaperonin_Cpn60_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001844">
        <property type="entry name" value="Cpn60/GroEL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002423">
        <property type="entry name" value="Cpn60/GroEL/TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027409">
        <property type="entry name" value="GroEL-like_apical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027413">
        <property type="entry name" value="GROEL-like_equatorial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027410">
        <property type="entry name" value="TCP-1-like_intermed_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00118">
        <property type="entry name" value="Cpn60_TCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00298">
        <property type="entry name" value="CHAPERONIN60"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48592">
        <property type="entry name" value="SSF48592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52029">
        <property type="entry name" value="SSF52029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54849">
        <property type="entry name" value="SSF54849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02348">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00296">
        <property type="entry name" value="CHAPERONINS_CPN60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 9" id="KW-0143">Chaperone</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 9" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="29"/>
            <end position="32"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="86"/>
            <end position="90"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="413"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="477"/>
            <end position="479"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="493"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025702"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC59513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="541" mass="57012" checksum="EF484491EF9469BE" modified="2016-01-20" version="1">MPKILEFDENARRALERGVDKLANTVKVTLGPKGRYVVLDKKWGAPTITNDGVTVAREVELDDPFENLGAQLTKEVATKTNDVAGDGTTTATVLAQALVHEGLRAVAAGVNPMGLKRGMDAAAAAVSDALKSAAREVEDEKDIASVATVSSRDSHIGELLAEAFGKVGKDGVITVEESNTPSTELEFTEGMQFDKGFNSAYFVTDAERQEAVLDDPYILINQGKISAIAELLPLLEKVIQTGKPLFILAEDVEGEALSTLVVNKIRGTFTAVAGKAPGFGDRRKAILQDIAILTGGTVISPEVGLKLDQIGLDELGQARRIVVTKDNTTIIDGAGDESQVAGRVEQIKREIEASDSDWDTEKLQERLAKLSGGVVVIKVGAHTEVELKEKKHRIEDAVSATRAAIEEGIVPGGGSAIIHAAAALEGDLGLSGDEAVGVRIVRKAVDEPLRWIAENGGENGYVVTNKVRELGVGNGYNAATGEYGDLVAQGVIDPVKVTRSALANAVSVAGMLLTTEVLVVDKPEDEDEADAGHGHGHGHGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW49</accession>
    <name>A0A0Q8VW49_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892529.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58957">
        <property type="protein sequence ID" value="KRC58957"/>
        <property type="gene ID" value="ASE19_23155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1196738at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="49"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="305" mass="33301" checksum="E2B3E058C2816B50" modified="2016-01-20" version="1">MGVVSLAEVARNRVYIPWVPIPPGRMVELPGRGGATYVTDTPGPSPDSPTIVLLHALGTTGLLTWFPAIQPLSKRFRVVTLDQRWHGQGIRSEEFSLTDCADDVAALIDVLELRDVVVGGYSMGSIVAQRVWRQHPDKVDGLVLGATTDRFQLNAAERGFFLGMGSTMLALRGVSRSRTALKAGRLAARGGLAPSDMHEWALREFRSTSPWAVGQALAALGRHHSRPWIGRIDVPTAVVVMMRDRVIPTSRQIALARSIPGATIHEVDDGHAGCVLASEKFVPRFVEAAATVNARRRDFRRPEPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VXU3</accession>
    <name>A0A0Q8VXU3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_00585</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the asparaginase 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896775.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59565">
        <property type="protein sequence ID" value="KRC59565"/>
        <property type="gene ID" value="ASE19_00585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1659551at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004067">
        <property type="term" value="F:asparaginase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006528">
        <property type="term" value="P:asparagine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08964">
        <property type="entry name" value="L-asparaginase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004550">
        <property type="entry name" value="AsnASE_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036152">
        <property type="entry name" value="Asp/glu_Ase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006034">
        <property type="entry name" value="Asparaginase/glutaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040919">
        <property type="entry name" value="Asparaginase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027473">
        <property type="entry name" value="L-asparaginase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027474">
        <property type="entry name" value="L-asparaginase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037152">
        <property type="entry name" value="L-asparaginase_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00710">
        <property type="entry name" value="Asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17763">
        <property type="entry name" value="Asparaginase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001220">
        <property type="entry name" value="L-ASNase_gatD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00139">
        <property type="entry name" value="ASNGLNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00870">
        <property type="entry name" value="Asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53774">
        <property type="entry name" value="SSF53774"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51732">
        <property type="entry name" value="ASN_GLN_ASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Asparaginase" evidence="6">
        <location>
            <begin position="6"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="Asparaginase_C" evidence="7">
        <location>
            <begin position="213"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="91"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="5">
        <location>
            <position position="14"/>
        </location>
    </feature>
    <feature type="active site" description="O-isoaspartyl threonine intermediate" evidence="3">
        <location>
            <position position="14"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="59"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001220-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR001220-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR604550-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="335" mass="34827" checksum="0189BE1A65F4A5B3" modified="2016-01-20" version="1">MTRPTIAVGALGGTIASTSSVADGSEIVPTLTAERLAAAVPGLASVADVRAETLAQLPSPSLDEPTILRTLLWAREVVDAGATGVVITQGTDTLEESAYLLDLFWDRPEPLVVTGAMRSPQAAGADGPANLLTAVRCAAERQSRERGALVAFDDEIHQARWVAKTDSMATGAFRSPVFGPIGRCVEAEVGYGVPAGRVPPLRLSSGQETGDPRVPLVTTYLGDDGYLLDAIRADEVDGVVVAGFGAGHVSPTMAQAIGRLARQVPVVFASRTGSGPTGRAMYGYPGSEIDLIERGAVGAGWLPPVKARLLLWALALRGPLARADVAAEFEARGRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYY9</accession>
    <name>A0A0Q8VYY9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Flagellin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_01345</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Secreted</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Bacterial flagellum</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the bacterial flagellin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896645.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59696">
        <property type="protein sequence ID" value="KRC59696"/>
        <property type="gene ID" value="ASE19_01345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="636786at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009288">
        <property type="term" value="C:bacterial-type flagellum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001492">
        <property type="entry name" value="Flagellin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046358">
        <property type="entry name" value="Flagellin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042187">
        <property type="entry name" value="Flagellin_C_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001029">
        <property type="entry name" value="Flagellin_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42792">
        <property type="entry name" value="PTHR42792"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00700">
        <property type="entry name" value="Flagellin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00669">
        <property type="entry name" value="Flagellin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00207">
        <property type="entry name" value="FLAGELLIN"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="6" id="KW-0966">Cell projection</keyword>
    <keyword evidence="6" id="KW-0969">Cilium</keyword>
    <keyword evidence="6" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Flagellin_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="Flagellin_C" evidence="5">
        <location>
            <begin position="182"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC59696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="266" mass="28302" checksum="3B375363AF75FA32" modified="2016-01-20" version="1">MGLRINQNIEATNSYRNLSVTQNQLSKSMEKLSSGFRINRAADDAAGLAISEGLRSQVGGLKVAVRNAQDGVSVAQTAEGALTEVHSMLQRMNDLSVQYNNGTQNTESQAALQAEFDALNTEITRIKDNTKFNGVDLFAGNALTFQVGYDNADTIDIDATSLADFTAGAAVAAVDITDSNTLQAAITEVSTQRAALGAVQNRFEHTINNVNVAIENLSASESRIRDTDMAQEMMSLTRSQILSQAGTAMLAQANSAPNGVLQLLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZ29</accession>
    <name>A0A0Q8VZ29_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADH-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00925</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896723.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59618">
        <property type="protein sequence ID" value="KRC59618"/>
        <property type="gene ID" value="ASE19_00925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1928091at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13460">
        <property type="entry name" value="NAD_binding_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="1">
        <location>
            <begin position="10"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="302" mass="32331" checksum="CE3EB3FE66792FB6" modified="2016-01-20" version="1">MDDPTVLVTGATGFIGSRLADALVDRGTQVRALTRRPEAYEGPGTAYGGDVGDEASLADALAGVDVAVYLVHSLDREDFEERDAAAARSFGAAAARAGVRQIVYLGGLGDESDDLSAHLRSRREVEGLLGEAGVPVTVLRAAIVVGHGGISWELTRQLVKNLPAMVVPRWTSTRTQPIAIDDVVRYLVGVIGNEDALGQVFEIGGPEAMTYTDMLTIASEVINDRPVPLVRVPVLTPRLSSYWLALVTDVDVTTGRNLIDSMSTEVVVTDQRIRDVVPGEPLDYREAVRRAVSERLQAGESV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZ75</accession>
    <name>A0A0Q8VZ75_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Trans-aconitate methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01170</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896675.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59666">
        <property type="protein sequence ID" value="KRC59666"/>
        <property type="gene ID" value="ASE19_01170"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1739932at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030798">
        <property type="term" value="F:trans-aconitate 2-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023149">
        <property type="entry name" value="Trans_acon_MeTrfase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="36"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="28021" checksum="2E3A92320237C1C5" modified="2016-01-20" version="1">MRSTWDPQRYLAFADERGRPFVDLVARIDSTDPRVVVDLGCGPGNLTSLLAGRWPAAAVTGVDSSADMVRVASDSAAAARVVFHKADLRDWVRDVEPGSVDVLVSNATLQWVPEHLALLPALAAAVSPGGWLAFQVPGNHVAPSHTLLAELAAEPPYAAHTAGVERVGAHDATTYLRALQGLGGEVDAWETTYLHVLQGEDPVFTWISGTGARPTLQALPEDLRPGFESEYKARLRAAYPDDGHGVAFPFRRIFVVARMPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZ92</accession>
    <name>A0A0Q8VZ92_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD(P)-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01255</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896659.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59682">
        <property type="protein sequence ID" value="KRC59682"/>
        <property type="gene ID" value="ASE19_01255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1135906at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="287" mass="30328" checksum="AE8B90AF181D924F" modified="2016-01-20" version="1">MSDDTQFPAQQQVPPGLTGEMRPEPDHGEQSYVGHGRLEGQVALITGGDSGIGRAVALAYAREGADIAFTHLAEEQPDADVTVALVEEAGRAVVPMALDLTERAACDEAVQRTLDELGGLDVLVNNAGFQMARDHALEDFSDDRIDRTFKTNLYALMWLTRAAVPHLRKRPGCIVNNTSIQAYEPSTTLLDYAATKAAINNLTVNLAASLGPDGIRVNAVAPGPVWTPLQPATQEPEKVEQFGADTPLGRAGQPGEVAPAFVFLASPADASYVSGTLLGVTGGKPVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UME9</accession>
    <name>A0A0Q8UME9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATP-dependent DNA helicase RecG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20185</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895959.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46184">
        <property type="protein sequence ID" value="KRC46184"/>
        <property type="gene ID" value="ASE19_20185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="234717at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="1">
        <location>
            <begin position="296"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="2">
        <location>
            <begin position="492"/>
            <end position="680"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="748" mass="80878" checksum="E3E7C0303E479506" modified="2016-01-20" version="1">MAITFESPLTAVLGAAKPAQRKKFEDGLGLRTVGDLLHHFPRRYLETGSLTRVSDLRIGQLLCVVGEIAHSETIGYTDRRSGRYAYRVEAILRTAGPSLKMTFFAKGQRMADWHANRVAVGNRGVFLGKAGRFRDQWQLTNPQLSIFGMADGDEDSAVQEVLEFGALYPIYPLTKGLQTWDVARAVKVARDLVDDVPEILPAPVRDHYDVAGIADAYAWVHRPEDREQVERAHHRFRFEEALVTQLVLGRRRRAIRSQGATVRDGGDGAVLGAFDERLPFELTAGQAAVGKEIDHDLAQPHPMNRLLQGEVGSGKTLVALRAMLRVVDSGGQTALLAPTEVLAQQHYRSIVAMLGELADGGTIFGSGTGTRVELLTGSMTKTQRTGPLSRIASGEAGIVIGTHALLQDNVFFADLGLVVVDEQHRFGVEQRAALTDKAAAPPHLLVMTATPIPRTVAMTVFGDLETSTLTELPAGRAPIQTNVVPLAEQPAWLGRVWERVREEVAKGHQVYVVCPRISGDETEAGQVEVVDLPDEDTGEEQRPKPPAAAVEEVVERLSSGALEGLRIGLLHGRLPADEKDATMRAFAAGDIDVLVSTTVIEVGVDVANATGMVILDADRFGVSQLHQLRGRVGRGGLPGLCLLVTHAEAESPARERIEAVAATTDGFALSRVDLEMRREGDVLGASQAGRRSSLVNLRVLRDEDTILAAREAAEALLDVDTDLSQAPGLADAVRDLELSQQADFVDKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMN9</accession>
    <name>A0A0Q8UMN9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">bact-PGI_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20715</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PGI/PMI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896039.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46268">
        <property type="protein sequence ID" value="KRC46268"/>
        <property type="gene ID" value="ASE19_20715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1179564at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004347">
        <property type="term" value="F:glucose-6-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004476">
        <property type="term" value="F:mannose-6-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019490">
        <property type="entry name" value="Glu6P/Mann6P_isomerase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10432">
        <property type="entry name" value="bact-PGI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="bact-PGI_C" evidence="2">
        <location>
            <begin position="198"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="341" mass="35895" checksum="9F503B055EB8B899" modified="2016-01-20" version="1">MVWFDESRLDDEGALASADLRLRTLAESGSRVRREVGDSADAIAEAVSRASETRPRAVIAAGPDSRLLRAVLEPFCPVPFVAWPSPALPGWAGGLDLVVVLAPEGGDPGTALAVAEAARRGCQLVVATPRDSLVAEHATGRWTTLLPTSTGDQLATAVAMLSFLDQVQLGPSAEPDAVAEALDAVAIACSPHRDISINPAKMLAISLADASPLIWGGSVLAARAARRVAESIRRTSGRTALAGDAEHLLPVVEAARPRNVFADPFADETGDRRPALVILDDGVDDPVVRDQRIRLEEAALGHDVRVEHVSSEAVGEVARYASLLLHGTYAAEYLRLGLVAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN44</accession>
    <name>A0A0Q8UN44_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Virion core protein (Lumpy skin disease virus)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21395</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896159.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46388">
        <property type="protein sequence ID" value="KRC46388"/>
        <property type="gene ID" value="ASE19_21395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="886332at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd03408">
        <property type="entry name" value="SPFH_like_u1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033880">
        <property type="entry name" value="SPFH_YdjI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13421">
        <property type="entry name" value="Band_7_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Band_7_1" evidence="1">
        <location>
            <begin position="52"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="421" mass="44503" checksum="B119663AEA765ACA" modified="2016-01-20" version="1">MGLISAAQAAVSGVIADQWLEYFNCEALPENLLAVRGRKWLNSRGKVVSGSDNVISNGSKIAVADGQFMLIVEQGRILDYCAEPGEYVFDLGSEPSLLGGGDLSDNLTAALRNTWERFKFGGQPGKDARVYFFNTKELYGNQYGTPNRVPFRVVDANIGLDVDIAIRFFGQYSYRIVDPLLFYANVAGNFPAVFPRAQIEGQLKTELLDALQPAVARISALGIRYSALPGHTTEMAAALNDILSPKWRQLRGIEIVSFGVASVTASTEDEQMIKELQRKAVLRDPTMAAATIVDAQAAAMQVAAGNDAGAVVGFAGLGLAQGGGAGINPGQLYALGQQAASPGQVPPPPPPPPAAPAQAVGWACTCGATNTGKFCADCGTPKPVGAPQYQCDKCGWVPPDPTRPSKFCPECGDVFDDGDVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN58</accession>
    <name>A0A0Q8UN58_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896175.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46405">
        <property type="protein sequence ID" value="KRC46405"/>
        <property type="gene ID" value="ASE19_21480"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1892053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="16265" checksum="5F145E3883358574" modified="2016-01-20" version="1">MSRRRRADERGSGLVEVIWMGVLLLLPLLWIVLSVFEVQRGSFGVSGAARAAARAYALAPDDAVGERRALVVARQTLADQGLHDVPLSVTVTCSPYPHQCHSGTSVITVRITSAVRLPLLPDVLGSGAPTFRLSAEHTVPIGRYQEIDRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNE4</accession>
    <name>A0A0Q8UNE4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Peptide methionine sulfoxide reductase MsrA</fullName>
            <shortName evidence="4">Protein-methionine-S-oxide reductase</shortName>
            <ecNumber evidence="4">1.8.4.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Peptide-methionine (S)-S-oxide reductase</fullName>
            <shortName evidence="4">Peptide Met(O) reductase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">msrA</name>
        <name evidence="7" type="ORF">ASE19_22070</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>[thioredoxin]-disulfide + H2O + L-methionine = [thioredoxin]-dithiol + L-methionine (S)-S-oxide</text>
            <dbReference type="Rhea" id="RHEA:19993"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:58772"/>
            <dbReference type="EC" id="1.8.4.11"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 4">
            <text>[thioredoxin]-disulfide + H2O + L-methionyl-[protein] = [thioredoxin]-dithiol + L-methionyl-(S)-S-oxide-[protein]</text>
            <dbReference type="Rhea" id="RHEA:14217"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="Rhea" id="RHEA-COMP:12313"/>
            <dbReference type="Rhea" id="RHEA-COMP:12315"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16044"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:44120"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.8.4.11"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the MsrA Met sulfoxide reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.8.4.11" evidence="4"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896274.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46504">
        <property type="protein sequence ID" value="KRC46504"/>
        <property type="gene ID" value="ASE19_22070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1554384at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033744">
        <property type="term" value="F:L-methionine:thioredoxin-disulfide S-oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008113">
        <property type="term" value="F:peptide-methionine (S)-S-oxide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01401">
        <property type="entry name" value="MsrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002569">
        <property type="entry name" value="Met_Sox_Rdtase_MsrA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036509">
        <property type="entry name" value="Met_Sox_Rdtase_MsrA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01625">
        <property type="entry name" value="PMSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55068">
        <property type="entry name" value="SSF55068"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00401">
        <property type="entry name" value="msrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PMSR" evidence="6">
        <location>
            <begin position="49"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001497"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="212" mass="23600" checksum="6571DCD0424EE6F9" modified="2016-01-20" version="1">MFSRRKTELVDPTDALPGRPTPAYPLPAVHDVLGTPLVTDEVPDGLEVAEFGLGCFWGAEEIYWQLPGVWSTSVGYAGGTTPNPTYEEVCSGRTGHTEAIRIVFDPEQVSYADLVKRFFEVHDPTQGMRQGNDIGTQYRSAIYFTTPEQETEARELTKVYGDELARLGFDPITTEIAPAGEYYYAEPHHQQYLHKVPNGYRCHANTGVPFPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNI2</accession>
    <name>A0A0Q8UNI2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_22390</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896326.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46558">
        <property type="protein sequence ID" value="KRC46558"/>
        <property type="gene ID" value="ASE19_22390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007168">
        <property type="entry name" value="Phageshock_PspC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13581">
        <property type="entry name" value="HATPase_c_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04024">
        <property type="entry name" value="PspC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="46"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="103"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="131"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="179"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="211"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="domain" description="PspC" evidence="8">
        <location>
            <begin position="20"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="domain" description="HATPase_c" evidence="9">
        <location>
            <begin position="298"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="83"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="404"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="430" mass="45544" checksum="F41070A52BADE09A" modified="2016-01-20" version="1">MTTTAAPAPPAASAARDVRRAWRDLRNPVLGGVAAGLAEHLAVPVLWVRVAFVVATFVGGSGVAAYAVLWAMLPAGPPPSMLAPGLESASRDGRRPGRRGRRLSDVGPVITLSALGVGAVFATGAVLGTGWWVWPLAIAVAGVALLWRQADEAQRERWLDATGKVDPVRVVLGGGGWAAWARIAVGLGLVVIAMVLFTLRDGSLSVARDATLAVVLAVGGIGIVAGPFVYRLMTELGQEREERVRTQERADVAAHLHDSVLQTLALIQKNPADAARLARAQERDLRAWLYAGESLDEATVASALRAAAAEIEDAYGITVDVVAVGDCDYDEHLRPVVLAAREATTNAAKHAGVPRVDVYAEITPTGVDVFVRDRGAGFDPAATPEDRLGVRRSIIDRMERHGGRAEIRSAPGEGTEVRLHLDRRSKESDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNN4</accession>
    <name>A0A0Q8UNN4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribonuclease 3</fullName>
            <ecNumber evidence="6">3.1.26.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Ribonuclease III</fullName>
            <shortName evidence="6">RNase III</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rnc</name>
        <name evidence="10" type="ORF">ASE19_20165</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>Endonucleolytic cleavage to 5'-phosphomonoester.</text>
            <dbReference type="EC" id="3.1.26.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ribonuclease III family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.3" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46606">
        <property type="protein sequence ID" value="KRC46606"/>
        <property type="gene ID" value="ASE19_20165"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004525">
        <property type="term" value="F:ribonuclease III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00593">
        <property type="entry name" value="RIBOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00104">
        <property type="entry name" value="RNase_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014720">
        <property type="entry name" value="dsRBD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011907">
        <property type="entry name" value="RNase_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000999">
        <property type="entry name" value="RNase_III_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036389">
        <property type="entry name" value="RNase_III_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11207">
        <property type="entry name" value="PTHR11207"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00035">
        <property type="entry name" value="dsrm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14622">
        <property type="entry name" value="Ribonucleas_3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00358">
        <property type="entry name" value="DSRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00535">
        <property type="entry name" value="RIBOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69065">
        <property type="entry name" value="SSF69065"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02191">
        <property type="entry name" value="RNaseIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50137">
        <property type="entry name" value="DS_RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00517">
        <property type="entry name" value="RNASE_3_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50142">
        <property type="entry name" value="RNASE_3_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="6" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="6" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="RNase III" evidence="9">
        <location>
            <begin position="12"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="DRBM" evidence="8">
        <location>
            <begin position="166"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50142"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="249" mass="26208" checksum="7CEF0CC106C45D53" modified="2016-01-20" version="1">MDARQASGITAYDELRRALGDPTLDPELLDRALTHRSYAYENGGLPTNERLEFLGDSVLGVVVTETLYLTHPDLSEGRLAKLRAAVVNARALAGVARDIGLGAHIKLGRGEEATGGRDKASILSDTVEAVIGAIHLSGGIEVSADVVHRLFDPLIEAASALGAGLDWKTSLQELAADQTLGVPEYVIEDDGPDHMKTFTAQVRVGDKLYGNGHGRSKKEAEQGAAETAYGEIAAALGLDHHGRPLAAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UR56</accession>
    <name>A0A0Q8UR56_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peroxiredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20485</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46233">
        <property type="protein sequence ID" value="KRC46233"/>
        <property type="gene ID" value="ASE19_20485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1996723at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016209">
        <property type="term" value="F:antioxidant activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="1">
        <location>
            <begin position="7"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="16829" checksum="DFC23E14618CFC63" modified="2016-01-20" version="1">MSDPARLAPGDTAPAFTLTSDTGEEVSLASLLAGDRKVIVYFYPAAMTPGCTKQACDFTDSLDALQAAGYTVVGISKDAPAKLAKFRERDGLTITLLSDTDLAVHKAYGAFGEKKLYGKLVEGVIRSTFVVGADGAVELAQYNVKATGHVAKLRRDLGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UTP0</accession>
    <name>A0A0Q8UTP0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Molybdopterin synthase sulfur carrier subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_20560</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896014.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46243">
        <property type="protein sequence ID" value="KRC46243"/>
        <property type="gene ID" value="ASE19_20560"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1995573at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="SSF54285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="96" mass="10235" checksum="3931C96BA526C3DB" modified="2016-01-20" version="1">MAIEVRIPTILRTYTGGEKAVDADGATLTALIDSLEANHPGIKDRLVEDKGNGIELRRFVNVYINDEDVRFIGSLDAALSDGDQVVILPAVAGGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU74</accession>
    <name>A0A0Q8UU74_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17435</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48718">
        <property type="protein sequence ID" value="KRC48718"/>
        <property type="gene ID" value="ASE19_17435"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359441" evidence="2">
        <location>
            <begin position="30"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="189" mass="19151" checksum="42FEB0865B3A14CC" modified="2016-01-20" version="1">MAPVMCRQALAASGLCLALALAGCSGDEAPEQATTTPTATSSPSSSPASSPSEATVDGHRGRYSGPLTEVVRRDPPGLLLEPPPADADPDASWTEALAGCFHGAIACVATGNAEVTLALVTGPGDAVIKGRTIFDRSLTYVVTWDPAPCSTIAAERCRVVNLLTADAKGALPAGTQIYAFELPADDDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUA7</accession>
    <name>A0A0Q8UUA7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17800</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893182.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48780">
        <property type="protein sequence ID" value="KRC48780"/>
        <property type="gene ID" value="ASE19_17800"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="380"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="404"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="435"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="124"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="482" mass="52991" checksum="421D7CF8D69B02E3" modified="2016-01-20" version="1">MTEAFGDSGQRLQRGVGLLIFGTAVAGAALLGWSLSDSESHSTKPSDGVVLGAWHLLYDTQAPTLATLAFAAGLALLFAAGVALLERRIANHARRSDDGARLPLSPRHVMAETRGTFHGPVTLTVLVPAHNEAVGIRATLESLLAQSHRPDRVIVVADNCTDDTVEIAREVGVEVMITVHNQHKKAGALNQVLAKVLPTQGENDLVMVMDADTSLDAGFLASVVRRMTEDRALMAIGGLFYGEPGKGLIGLFQRNEYTRYGRDLRRRRGRVFVLTGTATVFRPRALRTVSAERGKALPGVPGDVYDTLVLTEDNEITLALKTLGGLVMSPADCTVVTEVMPTWRALWVQRLRWQRGALENLGEYGMRAATFRYWAQQLGIGYGVIALSAYLLLMFLMMTSYDQWVWFPFWVGTGLVFTVERIVTVWRGGWKARLLAATLFPELCYALFLDIVYLKGILDMSFGRQATWHYEAQPRTASQVQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUC4</accession>
    <name>A0A0Q8UUC4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_17810</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893184.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48782">
        <property type="protein sequence ID" value="KRC48782"/>
        <property type="gene ID" value="ASE19_17810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="10"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="123"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="245"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC48782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="399" mass="42911" checksum="1C65E3BD34F910D9" modified="2016-01-20" version="1">MDFDLPDSALAVQEGVAAVAAKYDHAYWSRCEEEHRFPQEVFDDLGAGGWFGLCVPEEYGGGGQGLLELAVANMTLCASGGVAGTFFYVTTPGFGAMTLTRHGSAEQKQRILPGLAEGTVQFCLALTEPDAGSNAIEIKTQARRAPDNPDEFVIKGQKVWISNVENADWMVAVTRTIPAAETRERGLPRTAGFTLFLVDVKEALAAGTLSYTPIPKMGSNILHSSQVFFDDVRVPAAHVIGEVDAGFAVLWDVLNPERILAASGGVGTADAALRIASDYAREREVFGRPIGANQGLQFPLAQIKAKAELGRLMTYKAAWLFDQGRPCGNEANVAKLTGAQVGWEAANQAFQTLGGMAYSKEYPVERIFRDARIAKNIPVAEELVLAHIGTQMLGLPKSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUP5</accession>
    <name>A0A0Q8UUP5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_18635</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48926">
        <property type="protein sequence ID" value="KRC48926"/>
        <property type="gene ID" value="ASE19_18635"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.390.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011096">
        <property type="entry name" value="FTP_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003137">
        <property type="entry name" value="PA_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023612">
        <property type="entry name" value="Peptidase_M4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027268">
        <property type="entry name" value="Peptidase_M4/M1_CTD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001570">
        <property type="entry name" value="Peptidase_M4_C_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013856">
        <property type="entry name" value="Peptidase_M4_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07504">
        <property type="entry name" value="FTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02225">
        <property type="entry name" value="PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01447">
        <property type="entry name" value="Peptidase_M4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02868">
        <property type="entry name" value="Peptidase_M4_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00730">
        <property type="entry name" value="THERMOLYSIN"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359445" evidence="8">
        <location>
            <begin position="27"/>
            <end position="1049"/>
        </location>
    </feature>
    <feature type="domain" description="FTP" evidence="12">
        <location>
            <begin position="111"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M4" evidence="9">
        <location>
            <begin position="259"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="domain" description="PA" evidence="10">
        <location>
            <begin position="449"/>
            <end position="527"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M4_C" evidence="11">
        <location>
            <begin position="551"/>
            <end position="666"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="344"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="598"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009388"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR623612-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF07504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC48926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1049" mass="109377" checksum="F3A6FD01950ADBEE" modified="2016-01-20" version="1">MGKGIGLSLVGAAVAVVPTAPVVAKPDPTVVQEMRAAADGDVTVTTSPATGRVSFVGATGDLFPSERSGRTASGATAKANGYVEKYARAFGTTAGQLGQGRATKTPAGYTVDFTQTYQGVPVFASKLRAHVDAQGDLTSVSGYVAPSITLDVTPRLDKDAAVAKAIKLASRAPAGAGEAATDKPRASSLTATKAELVVYRMGAIQGVAGRNLLAWVVEVTDGKLVRETSVLDAKTGKPVNRYSMIAHDLDRELHEESIDTDPVWSEGDAFPSTLDADQASEVQGTGEAYWLFKNTFNRDSYDGAGAKMVTVNNDPTIDCPNANWNGKSTNYCSGVSSDDTVAHEWGHAYTEYTSGLLYQWQPGAMNEAYSDIWGETVDMLNDRFNTPDEETKRTDGKCSEGTRGDISVVVSPDEQVGTCTAAAAAFGPIIDDVTDDLVVGTDAIEEDEGEVVGTDTDGCSPFGNPGEIAGKFVYVDRGLCAFADKIANAEDAGATGIVFGNNRAGVSSVAGFSELYGAMVSQEDGTKIKAAAGPLSINLKDAEAPGSRDASYRWLSGEDDPAFGGAIRDMWNPNCYGDPAKVSDEEYFCDTDDSGGVHTNSGVVNHGYALLVDGGTFNGITVPGIGLDKAANIYWHTQTSYLTSTSGFGELADGLEASCAALTGNTGLKKLALGSSATGGGPADGGALAPISASDCAAVTKMIDATELRVEPTQCNFRLMFRRGTVGCGNGLVTKNLYSQGFESGLPASWTTDVEADNAHFDPTVTTALPLVTEGGVAHKGGSSVLYFNDKGDDGNYGSCNGDAEDYSSRVGVATPQLTVPAGELPRLSFDHYVASEVEFDGGNVKYSVNGGAYEQVPDSAWLYNAPGGHLETAAGGNTNPMAGETAFTGTDGGQPTGSWGNSVIDLADLAATGDKISFRFDFGMDGCNGIDGWYIDNVTLSICAKPVVPPKPSPATVAKTGTSVKGIVKIRVKVASGATPSGLVLVRIRGRGYTTKLVHGVLTVRAKSQMARLWRNGFRKAPAYVYYGGDKKVARFAGHVTIKLIGRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUQ0</accession>
    <name>A0A0Q8UUQ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutamine synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18520</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glutamine synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893307.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48906">
        <property type="protein sequence ID" value="KRC48906"/>
        <property type="gene ID" value="ASE19_18520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="179916at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004356">
        <property type="term" value="F:glutamate-ammonia ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040577">
        <property type="entry name" value="Gln-synt_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008146">
        <property type="entry name" value="Gln_synth_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027303">
        <property type="entry name" value="Gln_synth_gly_rich_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022147">
        <property type="entry name" value="GSIII_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00120">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18318">
        <property type="entry name" value="Gln-synt_C-ter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12437">
        <property type="entry name" value="GSIII_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01230">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00181">
        <property type="entry name" value="GLNA_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gln-synt_C" evidence="2">
        <location>
            <begin position="194"/>
            <end position="479"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="725" mass="78455" checksum="AAC845E720321BDE" modified="2016-01-20" version="1">MTANPTRLGAIREIEATVAPAAFFDAAEKTGAIYGENVFSLAVMQKRLPKSVFKSVAATIQKGEKLDPAVADIVASAMKDWAMEKGVTHYAHVFYPLTGLTAEKHDSFMEPVGDGTAVWEFSGKTLVQGEPDASSFPNGGIRATFEARGYTGWDVQSPAYILENPNGNTLCIPTIFVSMTGEALDHKTPLLRSQNAMSEQAQRVLALFGHEDIDKVVSYCGPEQEYFLVDTSFVNSRPDLLNAGRTLFGAKPPKGQEFDDHYFGAIPERVLGFMHDTERALFKLGVPAKTRHNEVAPGQFEIAPVFERANLASDHQQLLMSTFRSIAKQHGMECLFHEKPFAGVNGSGKHVNFSFGNGNQGNFLSPGDNPHDNAQFLVFCAAVIRAVHLYGGLLRLSIASAGNDHRLGANEAPPAIISIFLGDQLQDVFEQIAKGGATSSKQKGVLSVGVDTLPDLTKDAGDRNRTSPMAFTGNRFEFRAAGSNQTVAAPMVIINTIMAEALDYLATEIEAAVSAGADFNDAVQSVLAKVMEQHGAVVFNGNGYSEEWHAEAEKRGLKNLRTTVDALPEYQTPEAKKLFSTYGVFSEAELESRFEVGVEQYVMTVNVEANLTGEIAKTTILPAAVRYQTELATNAAALKAAGIEPDTTDLVTVTEMIAALRAGVAALDAAKAGDHDHEGLAEATYYRDAVLPAMLQIREAADAIETFIADDLWPLPTYQEMLFIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUT4</accession>
    <name>A0A0Q8UUT4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18930</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48974">
        <property type="protein sequence ID" value="KRC48974"/>
        <property type="gene ID" value="ASE19_18930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2033238at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="60" mass="6964" checksum="A504C652F28741D2" modified="2016-01-20" version="1">MLGGMGKDYGPWVKHDWCPRCYRRTEQTSWYRRLLGQPPASDERRIRCNECSGEVSSVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUT9</accession>
    <name>A0A0Q8UUT9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17630</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893154.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48751">
        <property type="protein sequence ID" value="KRC48751"/>
        <property type="gene ID" value="ASE19_17630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1178320at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359449" evidence="1">
        <location>
            <begin position="21"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="471" mass="48202" checksum="9640E4D3E3413283" modified="2016-01-20" version="1">MRRCLGCASALLLSLTVAGCSLEREDDARGPVPSTSAATVDGEGSLRIEHAAEPQLFRAGDGLLLLAARTTDDGPRGPVLAATLDGDAWSAPEEISTPGTTTSPPRAAFNDAGAGVAVWTELTAGDDAMEAPVRTVARVRGTDGAWSDAQVLRGISYVNDVQVNAAGDVAVLGLSDEGAPILALGSAAGSWTTSDLDWYAETRIALDEHGGVHAIATSTERGGGGAVTTHYLPPGGVWTAPEAVDAEGVSTEGSQIVALPGGGEAIVIGTVSPNWQSTFDTQFYWTTAYEVRQRASRDEPFAEVWAKDGATQLQTRVVGGAVEVAWLGLADSKQVAGAEGPVTAPTTEVLTTARLGGDEQVLAQTEVEQENDDSRGGIALAPGSGCGARSWVWRPFAVDGVPAALAVRAGDLEATYPVVGAPLAPGLSGALACAGGDRPWVARVDDAVRAGSEETDDVRVTDATVVVAALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVD2</accession>
    <name>A0A0Q8UVD2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_18935</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893377.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48975">
        <property type="protein sequence ID" value="KRC48975"/>
        <property type="gene ID" value="ASE19_18935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2190966at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="84"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="98"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="120"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="157" mass="15735" checksum="9E95EDBB1D117292" modified="2016-01-20" version="1">MTKNATHDLAHDLRDVADDLKGIVETVVVPRVGSAVHAAAERVPDLSTAMQSAADRVPASVVDRLPDRVADRLPTQKSHRGRKLLLIGALAAVAAGAVAAARSRAATPSPYPAPEPVPTRTTGPTSGSTNGSPNGSPNGSPTGSTTASVPEGGGLPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVS4</accession>
    <name>A0A0Q8UVS4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_18775</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893850.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49119">
        <property type="protein sequence ID" value="KRC49119"/>
        <property type="gene ID" value="ASE19_18775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014325">
        <property type="entry name" value="RNA_pol_sigma-E_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02983">
        <property type="entry name" value="SigE-fam_strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="13"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="99"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC49119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="166" mass="18596" checksum="2DD67ED2A34C1749" modified="2016-01-20" version="1">MARGYQREFEEFVRRASDRLVRTAYLLSGDRGHAEDIAQTALLRTARRWRAARRDPDAYARRVVVNLTKDRWRGLSRQPAEAVLDVDVAVPVHDGLAERDELLRAVRLLPAGQQAVLVLRYFDDLSVADTAAALGCSAGTVKSQTARALDRLRSALIEKENADVDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXQ4</accession>
    <name>A0A0Q8UXQ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lipid-transfer protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15670</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893527.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50058">
        <property type="protein sequence ID" value="KRC50058"/>
        <property type="gene ID" value="ASE19_15670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1271930at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="355" mass="37970" checksum="044F0FDA4EC24222" modified="2016-01-20" version="1">MRDVAVVGFAQRQMPEFDGSPTCVELLVPVFKELYEQTGWTRKDVGFWCSGSSDYLAGRSFSFVQAVDAIGVIPPVNESHVEMDLAWAMYEAWLKIQTGEVDTALVYAFGKSSAGVLRRTLALQLEPYTMTPLWPDTVSLAGLQARAGIDAGAWDERAMAEVANRSLTDAEKNEHAIRKGGSSVEELLARPMYADPLRKHDCSPVTDGVAALVLAAGDKAREVRERPAWLTGISHSIDPMGMGVRDLTRAPSAQRAGAALDLGGVEVAELHAPFSHQELILRRELGLGDDVVINPSGGALASNPMFSGGGIRVGEAAQRVWSGEADKTLAHATSGPALQQNLVCTLAASTEGNQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXU8</accession>
    <name>A0A0Q8UXU8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Tryptophan--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Tryptophanyl-tRNA synthetase</fullName>
            <shortName evidence="8">TrpRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">trpS</name>
        <name evidence="10" type="ORF">ASE19_22230</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the attachment of tryptophan to tRNA(Trp).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + H(+) + L-tryptophanyl-tRNA(Trp)</text>
            <dbReference type="Rhea" id="RHEA:24080"/>
            <dbReference type="Rhea" id="RHEA-COMP:9671"/>
            <dbReference type="Rhea" id="RHEA-COMP:9705"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78535"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.2"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8 9">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.2" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46653">
        <property type="protein sequence ID" value="KRC46653"/>
        <property type="gene ID" value="ASE19_22230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004830">
        <property type="term" value="F:tryptophan-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006436">
        <property type="term" value="P:tryptophanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00806">
        <property type="entry name" value="TrpRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00140_B">
        <property type="entry name" value="Trp_tRNA_synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002305">
        <property type="entry name" value="aa-tRNA-synth_Ic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002306">
        <property type="entry name" value="Trp-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024109">
        <property type="entry name" value="Trp-tRNA-ligase_bac-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00579">
        <property type="entry name" value="tRNA-synt_1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01039">
        <property type="entry name" value="TRNASYNTHTRP"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00233">
        <property type="entry name" value="trpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="8">
        <location>
            <begin position="201"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="15"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="24"/>
            <end position="25"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>L-tryptophan</name>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="153"/>
            <end position="155"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="201"/>
            <end position="205"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC46653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="345" mass="38041" checksum="C494240CF65C826E" modified="2016-01-20" version="1">MPEGAARPRVLSGIQPTSDSFHLGNYVGAVRQWVDLQRDHQPFFFIADMHALTVDWDPKLLRQRTLIGAAQLLAAGVDPARSSIFVQSHVPAHAQLAWVLNGLTGFGEARRMTQFKDKSAKGGEGAASVGLFAYPVLMAADILLYRPHYVPVGEDQRQHLELTRDLAQRFNSRFKKTFRLPEPYILKATAKLYDLQDPTRKMSKSSSAPGGIIEMLDDPKVTAKKIRSAVTDSGSEIRFDQEEKPGISNLLTIYSALTGESIPDLEEQYVGKMYGDLKKDLAEVVVGFVTPFRERTLELLEDQDHLMQVLAQGAATAGAVAEATLADVYQRVGFVAPTALRTTES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXZ0</accession>
    <name>A0A0Q8UXZ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16100</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50133">
        <property type="protein sequence ID" value="KRC50133"/>
        <property type="gene ID" value="ASE19_16100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="895767at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="24"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="604" mass="63375" checksum="2759EF27092E9C61" modified="2016-01-20" version="1">MSPVTLADALPSPEPAPRRPRRRAAATAGVVVVAAVVGGGAWAWQAWSSQGPQPAEALPANTLAYLAVDLDPPGGQKVAAYDALRSVPSLKKELGLGSTDDLRESIVDAIDSDGGCDLSWKDVKSWAGDRGAVAVVPQDGLQVVVVLQVSDADKARSGLGRTADDCGGFGFTVGEKWAVLAEDDQVAKQVVSDTKGANLAEDGTFQELTGAAGDPGVLTMYAAPALGKALLDDEDASDVLGFFSWSPVTSLDPVAGLVSSVTFLSAFATDFEGDADGDFDEEFTPEQQRVMDLMDEYEDLTPTQQKQLDADMAKAFHYDEVGPEGDAEPIDEDQIDDELEDLFQVPEKVRKQVENFSGLGGVARFDDGGLELEIVADPFLTGYESTYDATVARDAVAALPADTVLAFGAGFKDGWAKPMVTRGGFFTSGSTDAELVDGFREATGLSPEDLEALGGDSVAFAAKKGFAKALEDEDLAKVTIAARVTGDPAKIEAALAKLAAQDDLGVVAKSVRTDDGVVIGPNPSYLAELVDPDRTLGDLERFQDATADADDAMVITYADFDDSWLPMVSEGDLSPEDAAAFGTTGISVTEDGGRHRLVARVTLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXZ8</accession>
    <name>A0A0Q8UXZ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Epoxide hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_20930</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S33 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896077.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46625">
        <property type="protein sequence ID" value="KRC46625"/>
        <property type="gene ID" value="ASE19_20930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1890883at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033961">
        <property type="term" value="F:cis-stilbene-oxide hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010497">
        <property type="entry name" value="Epoxide_hydro_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016292">
        <property type="entry name" value="Epoxide_hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06441">
        <property type="entry name" value="EHN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001112">
        <property type="entry name" value="Epoxide_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EHN" evidence="4">
        <location>
            <begin position="4"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="3">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="3">
        <location>
            <position position="301"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001112-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="370" mass="40779" checksum="04D7503623551DDF" modified="2016-01-20" version="1">MNQITPFVIDIAQTDLDDLRARLEHTRFAPAVPGDSWEYGTPSSYLRSMVEQWKAFDWRAVDERLNSYDNFVTEVDGQRIHFLHVRSQHAGATPLLLAHTYPGSVLDFLDMIDPLVDPEAHGGRAEDAFHLVIPSMPGFGWSTPVVDTGWTMRRVAAAYDVLMRRLGYDAYGVHGSDGGAMVGRELAVANPDGFLGAHVLHLFSFPSGDPAEFADFGPKEYAALEHMQWFQSVGGYNQMNGTRPQTVAAGLADSPVAVLAYSELFESFGNGTSLVAPEQVLAQATLYWLTNTYGSAARYHYEEQHAGAEPVVSTGRIGVAVFKDDFQTIRSLAERDNANIAHWSEFPRGGHFAAMEVPMDVVGDLRTFFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYB6</accession>
    <name>A0A0Q8UYB6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Electron transfer flavoprotein subunit beta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_19780</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase).</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterodimer of an alpha and a beta subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895890.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46114">
        <property type="protein sequence ID" value="KRC46114"/>
        <property type="gene ID" value="ASE19_19780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1027643at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01714">
        <property type="entry name" value="ETF_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014730">
        <property type="entry name" value="ETF_a/b_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012255">
        <property type="entry name" value="ETF_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033948">
        <property type="entry name" value="ETF_beta_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21294">
        <property type="entry name" value="PTHR21294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01012">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000090">
        <property type="entry name" value="Beta-ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00893">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ETF" evidence="3">
        <location>
            <begin position="25"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011355"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00025649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="266" mass="27625" checksum="8C441933FB859586" modified="2016-01-20" version="1">MTLSNIVVLVKYVPDATGDRKFEADNTVDRVGVDGLLSELDEYAVEQALQIKEKRADEEITVTALTVGPAEAEAAVRKALQMGADKAVHVQDDAIAGSDAVATSLVLAKAIEKIGVPELVVGGLASTDGGLSVVPAMLAERLGLPQVTLAAVVETQGDQVRIKRDGDTATEVVGGTLPLVLSVTDQSGEARYPSFKGIMAAKKKPLDTFSLADLGVDASEVGLGAAWTTVENVTARPPRTAGEIVKDEDGSGATALVDFLASKKFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYG1</accession>
    <name>A0A0Q8UYG1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50143">
        <property type="protein sequence ID" value="KRC50143"/>
        <property type="gene ID" value="ASE19_16155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1944157at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359537" evidence="1">
        <location>
            <begin position="34"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="240" mass="26209" checksum="43FFBFEEA399FC4C" modified="2016-01-20" version="1">MHVKSFRRAIILAVALVASTLSLVTGTTTAAHAAAYTTKPYLQRSTTLVQHGSASYGKVTLTAGVGLVEAPGYDANRGTVQVQRQIVGQTAWSTIYTADLAANFHPSWTFAPTYSASYRVVYSGYSDASNSFGAATGGSYRVNVARNLHDNYRSSTRTFYGKVSPKYAGRAIVIQKSTCARPRLASCRWGAYKTIRTNSTSNFSLRLPVYRTKTHFRAVIAASNGYVKSFSNYYVSTWRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYK1</accession>
    <name>A0A0Q8UYK1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase</fullName>
            <ecNumber evidence="3">4.2.1.17</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20445</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.17" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895997.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46226">
        <property type="protein sequence ID" value="KRC46226"/>
        <property type="gene ID" value="ASE19_20445"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004300">
        <property type="term" value="F:enoyl-CoA hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="258" mass="26771" checksum="013566707F3CE687" modified="2016-01-20" version="1">MSVEVEKHGPVTLVTLSRPEVRNAVDAEHARLLTEAFEEFDADESASVAVLHGAGGVFCAGADLKAVSEGRVDVGAPGDGPDAGPAGMGPSRLLLSKPVIAAVDGYAVAGGLELAVWCDLRVMDPAAAFGVFCRRWGVPLIDGGTIRLPRLIGHSHALDLILTGREVGADEALRMGLANRVSAPGAVLEEALALAAQIAAFPQTCLRQDRLSSYEQHGLDLAEALAVEWKHGLVSLSADTLDGAARFAQGAGRHGAFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYQ4</accession>
    <name>A0A0Q8UYQ4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Transcriptional regulator WhiB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">whiB</name>
        <name evidence="13" type="ORF">ASE19_20750</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Acts as a transcriptional regulator. Probably redox-responsive. The apo- but not holo-form probably binds DNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="11">Binds 1 [4Fe-4S] cluster per subunit. Following nitrosylation of the [4Fe-4S] cluster binds 1 [4Fe-8(NO)] cluster per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="11">The Fe-S cluster can be nitrosylated by nitric oxide (NO).</text>
    </comment>
    <comment type="PTM">
        <text evidence="11">Upon Fe-S cluster removal intramolecular disulfide bonds are formed.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the WhiB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896045.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46274">
        <property type="protein sequence ID" value="KRC46274"/>
        <property type="gene ID" value="ASE19_20750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1908599at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035731">
        <property type="term" value="F:dinitrosyl-iron complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01479">
        <property type="entry name" value="WhiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034768">
        <property type="entry name" value="4FE4S_WBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003482">
        <property type="entry name" value="Whib"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38839">
        <property type="entry name" value="PTHR38839"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02467">
        <property type="entry name" value="Whib"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51674">
        <property type="entry name" value="4FE4S_WBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 11" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 11" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8 11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 11" id="KW-0408">Iron</keyword>
    <keyword evidence="6 11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 11" id="KW-0804">Transcription</keyword>
    <keyword evidence="7 11" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="4Fe-4S Wbl-type" evidence="12">
        <location>
            <begin position="21"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="22"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51674"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC46274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="84" mass="9636" checksum="8C604F9DB1A4D5B8" modified="2016-01-20" version="1">MRELFLVEAETEELGWQERALCAQTDPEAFFPEKGGSTREAKKVCQTCEVRMDCLEAALGNDERFGIWGGLSERERRKLKKRAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYT6</accession>
    <name>A0A0Q8UYT6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RNA polymerase subunit sigma</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_16795</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893724.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50255">
        <property type="protein sequence ID" value="KRC50255"/>
        <property type="gene ID" value="ASE19_16795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="12"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4" evidence="7">
        <location>
            <begin position="116"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC50255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="169" mass="18614" checksum="6169478414FF5FE5" modified="2016-01-20" version="1">MQPGTGGFAEVYAEHVTPVWRYVRLRVPADADAEDVTSQVFERAIRSWSGYDGTRGSVGGWLMGIARHTVADWWRRHGRELPTDLAASGLGEGVADDDPEGEALRRLGADEVRRRLGHLTAREREALALRFGSELTSPQIAELLGITPSAARMLVHRAVGRLREVMGDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZ09</accession>
    <name>A0A0Q8UZ09_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21465</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896172.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46402">
        <property type="protein sequence ID" value="KRC46402"/>
        <property type="gene ID" value="ASE19_21465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032109">
        <property type="entry name" value="Big_3_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008964">
        <property type="entry name" value="Invasin/intimin_cell_adhesion"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16640">
        <property type="entry name" value="Big_3_5"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49373">
        <property type="entry name" value="SSF49373"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359547" evidence="2">
        <location>
            <begin position="28"/>
            <end position="1121"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="3">
        <location>
            <begin position="237"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="3">
        <location>
            <begin position="337"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="3">
        <location>
            <begin position="435"/>
            <end position="521"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="3">
        <location>
            <begin position="530"/>
            <end position="620"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="3">
        <location>
            <begin position="631"/>
            <end position="718"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="3">
        <location>
            <begin position="728"/>
            <end position="806"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="3">
        <location>
            <begin position="830"/>
            <end position="919"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="3">
        <location>
            <begin position="932"/>
            <end position="1022"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="812"/>
            <end position="834"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1121" mass="111104" checksum="3E209C54DDBE39CA" modified="2016-01-20" version="1">MRRLISLVAASTLALGTPVLLASSAAADITAPAANAVLRGNATISAGGASDGTGCLSGSSPQTTLQLINSGNTVVFESVQGGTGAKSATFDTHAYANGAYTARAIERKRSGFLYCTNSTNTTNRSVTIDNITQLAYTGATEGPQNTSVTAKATLTDPNLASSVVPGQTVTFSLSGGTSVNATTDANGVATASLPISGPPRSASVTASFAQTSFYKPSSASTPFTVQKNPSTTTVVQPTPVVHGQAASFTAQVVRVNGTSDPTGTVQFTIDGDDFGTPVAVSGGTATSGSIATLSTGNHAIGARFNGDGNLLASTATDKTLVVGKAPTSTVLTSTGSPTVTGQAVTFSAEVDVVAPGAGDPAGGVQFTIDGDPYGTAIPLDGDTAELTVSNLTPGNHDVQATYNGNADFASSSSATLTHGVNRADTSLALSSSNDDAVAGEPLTFTAEVDVVGPGTGQPTGTVQFFADGDPIGAPVPLNNGTAVSPATGLDAGEHVITANYEGDDKFAGAADSLDQEVAAAHTTTAVTTSPNPSVVGQEITVSATVSPVSPATGTPEGAVQFEIDGQPGPFATLVDGAAEIQLSTLARGAHTVRATYLSADPNFVTSTSPVANHTVNKASTKTVVSSSAPVSAFGQPVTFTAAVSVLAPGAGSPSGTITFTDGSTVLGTADVDSSTGGVGSITVDDLGVGQHAIVATYDGDNSFNGSNGSVAQKVQRAQTSTVVTSSANPSQSGQGVRFTAQVSPVAPGAGNPTGTVQFTVNGANLGGPVAVANGSAQSNAFSSLSPGTYRISAVYSGDSRFVASTGVLDQGNGQNVAKGSTSTALESDDATSDHGQTVTFTATVTALAPATGKPTGTVQFWRGGTLLGATGLTPASAAGTSTASFATAALAPGQHEVRAVYVGNFNFEGSTATTTQTVGSVGTVTGIASDANPIVYGDTVTLTATVANGAPGASTPTGSVVFRSDGNVLGSADLSTSGGATTASLEVEGLTGGNHEVTATYSGDGSHATSTSPVLLQVVDRATPTLVAHDVADMPQDNWSRVEANLYGLGGVPLAGQAITFTTAPFQAGQCDRVTDANGYAMCDAPMRIGALILQGFEVWFAGNQNYAPAHASMVWEDPND</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0Z2</accession>
    <name>A0A0Q8V0Z2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Ligand-binding protein SH3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_17540</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the drug/metabolite transporter (DMT) superfamily. Small multidrug resistance (SMR) (TC 2.A.7.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893818.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49091">
        <property type="protein sequence ID" value="KRC49091"/>
        <property type="gene ID" value="ASE19_17540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1990300at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000390">
        <property type="entry name" value="Small_drug/metabolite_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045324">
        <property type="entry name" value="Small_multidrug_res"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30561">
        <property type="entry name" value="PTHR30561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00893">
        <property type="entry name" value="Multi_Drug_Res"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="33"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="57"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="83"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC49091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="104" mass="10651" checksum="AC2B1270C33FDB72" modified="2016-01-20" version="1">MAWLVLVVSGGLEAIWATALSRSEGFSRLAPSLVFAVAVTASMIGLGYAMRTLPVGTAYAVWVGIGAALTVVIAMVSGEEPVSALRILLILGLIGCVIGLKLAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1V0</accession>
    <name>A0A0Q8V1V0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RNA polymerase subunit sigma-24</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_14920</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51384">
        <property type="protein sequence ID" value="KRC51384"/>
        <property type="gene ID" value="ASE19_14920"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="8"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="103"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC51384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="382" mass="41282" checksum="03E189E038BE223A" modified="2016-01-20" version="1">MTLELADLLRELGPQVLGVLVRRGNDFAAAEDAVQEALVEAVRRWPEGRPDDPKAWLVTVAGRKLIDEQRSAIARARREERVEREPAPGPTEQADDTLLLLSRCCHPALSAASAVALTLRAVGGLSTAQIAQAFLVPEATMAQRISRAKRTVSGQRFDQPGDVTAVLRVLYLVFNEGFTGSVDLADEAIRLTRQLSAATDDPEVEGLLALMLLHHARRSARRTSSGGVVPLAEQDRTRWDTAMIAEGVDVLQAALARDRLGEYQVQAAIAALHDDAATAEETDWVQVVEWYDELLRIAPGPPVLLNRAVAVGAADGPLAGLRALESVAPDVPRRDAAAAWLHERAGAREEAARLYAVAAQKATNAAERDHLTRQAARLRSTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V406</accession>
    <name>A0A0Q8V406_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Protein translocase subunit SecD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">secD</name>
        <name evidence="12" type="ORF">ASE19_19110</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the SecD/SecF family. SecD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893407.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49005">
        <property type="protein sequence ID" value="KRC49005"/>
        <property type="gene ID" value="ASE19_19110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="121331at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015450">
        <property type="term" value="F:protein-transporting ATPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01463_B">
        <property type="entry name" value="SecD_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005791">
        <property type="entry name" value="SecD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022813">
        <property type="entry name" value="SecD/SecF_arch_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022645">
        <property type="entry name" value="SecD/SecF_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30081">
        <property type="entry name" value="PTHR30081"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02355">
        <property type="entry name" value="SecD_SecF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00916">
        <property type="entry name" value="2A0604s01"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01129">
        <property type="entry name" value="secD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0732">Signal</keyword>
    <keyword evidence="7 9" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="11">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359685" description="Protein translocase subunit SecD" evidence="11">
        <location>
            <begin position="34"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="416"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="443"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="475"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="523"/>
            <end position="540"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="546"/>
            <end position="565"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="136"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="172"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC49005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="609" mass="63774" checksum="BF79750B781F3702" modified="2016-01-20" version="1">MASHRPRPGRNLIIFFLGLAVIYGLTALSQASADTPWKPALGLDLQGGIRITMTTEDTPSKENLEEARRIIDQRVNGSGVAEAAVTTQGSRNIVVEVPGKGKETDRDQLEETVKRQAQLRFRLVACYDQDPGPCAASSGTGLPGSDGATGGLGRPGLDLGATADDDGTTDAATDKATATPTDTATGTTTADPSTSPSGTATGGATPGTDDKGDAKAFTADDAIAWSRSPDQAAITEYGKYTCDADGVLLNATDGKPADLADDPDKPLVACSQPEKDRPSMKYLLSRSVIEGTELDTASAGTPQNGVGWEVRLEMGNSKDKANPKGSTGAADDFETVSRAFSGTEEQFAIVLDGVIISAPRMTAVITDGRSSITGDFTEQQALDLANSLKFGALPIKFNDDQTSVEEIGPSLAGNQLQAGLTAGAIGLALVMLYCLFYYRGLGLVVVSSLFVAAAITYAMVLLLSETAGFTLTLPGIAGLIIAVGITADSFVIFFERIRDEMREGKSMRVAVETGWARARVTRVAANTVQILSALVLYIFATGAVKGFGFALGLTTLIDLAVLFWFTKPMVSWLAQFHAFNSGHKLSGLSKETLGMDVAKPRTATTGGNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V475</accession>
    <name>A0A0Q8V475_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carboxymuconolactone decarboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16825</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893728.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50259">
        <property type="protein sequence ID" value="KRC50259"/>
        <property type="gene ID" value="ASE19_16825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1893149at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051920">
        <property type="term" value="F:peroxiredoxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029032">
        <property type="entry name" value="AhpD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003779">
        <property type="entry name" value="CMD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02627">
        <property type="entry name" value="CMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69118">
        <property type="entry name" value="SSF69118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMD" evidence="1">
        <location>
            <begin position="24"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="161" mass="18425" checksum="466983D932199A79" modified="2016-01-20" version="1">MFIEIPEGKDPILYVWGELVPGIGPAASAMAMSVYEHSTLGLREFEAARLRIAQINGCLFCQDWRTERDGKKVEDTFDQAVLEWRTTRDFDERTRLAAEYAERYALDHHGIDDGFWQRMRTHYTDREIAELSMCLGSWLAFGRLNRVLGLDAACVLPSHIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5A4</accession>
    <name>A0A0Q8V5A4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 12">Flagellar biosynthetic protein FliP</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">fliP</name>
        <name evidence="13" type="ORF">ASE19_09330</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Plays a role in the flagellum-specific transport system.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cell membrane</location>
            <topology evidence="12">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="12">Bacterial flagellum basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the FliP/MopC/SpaP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52629">
        <property type="protein sequence ID" value="KRC52629"/>
        <property type="gene ID" value="ASE19_09330"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005837">
        <property type="entry name" value="FliP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005838">
        <property type="entry name" value="T3SS_IM_P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30587">
        <property type="entry name" value="PTHR30587"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30587:SF0">
        <property type="entry name" value="PTHR30587:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00813">
        <property type="entry name" value="FliP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00951">
        <property type="entry name" value="FLGBIOSNFLIP"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01302">
        <property type="entry name" value="TYPE3IMPPROT"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01103">
        <property type="entry name" value="fliP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01061">
        <property type="entry name" value="FLIP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="7 12" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="11 12" id="KW-1006">Bacterial flagellum protein export</keyword>
    <keyword evidence="5 12" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13" id="KW-0966">Cell projection</keyword>
    <keyword evidence="13" id="KW-0969">Cilium</keyword>
    <keyword evidence="13" id="KW-0282">Flagellum</keyword>
    <keyword evidence="9 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-0653">Protein transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="44"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="90"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="184"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="225"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006257"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU362069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC52629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="249" mass="26297" checksum="8465126D40268C96" modified="2016-01-20" version="1">MTLVHQLALAVVAPGGPNGPTGPGGGGSVQIDLTGLTDKPSNSLVVFLSLTLISLLPAIVLTCTSFTKILVVLGLTRNALGLQQTPNNQVLAGLALFLSLFIMAPVLGDINDAGVQPYLDGAKNTSQAFHDGMEPLRGFMLDNTDDEELMLLTNVADRKLPEKREEVSTATLIPAFVLSELKDAFIIGFIVFIPFLVIDIVVSGALMSLGMMMMPPVMVSLPFKLLLFVMVDGWALVIKSLVASYGGSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5F5</accession>
    <name>A0A0Q8V5F5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_09375</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894576.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52638">
        <property type="protein sequence ID" value="KRC52638"/>
        <property type="gene ID" value="ASE19_09375"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="82" mass="8740" checksum="CBF8C20EF9DD8C8B" modified="2016-01-20" version="1">MASKKSSNQQVTNYVSGLVDTTKGLLDDLTSTAGDLEKKAKKGGKKAAKAVVPSKKDVKALQQQIKDLGKQAEKLAKVRKAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5G0</accession>
    <name>A0A0Q8V5G0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Regulatory protein RecX</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">recX</name>
        <name evidence="5" type="ORF">ASE19_18850</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Modulates RecA activity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the RecX family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893364.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48962">
        <property type="protein sequence ID" value="KRC48962"/>
        <property type="gene ID" value="ASE19_18850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2025178at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006282">
        <property type="term" value="P:regulation of DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01114">
        <property type="entry name" value="RecX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003783">
        <property type="entry name" value="Regulatory_RecX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33602">
        <property type="entry name" value="PTHR33602"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02631">
        <property type="entry name" value="RecX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="174" mass="19368" checksum="0ABDFCDE188CE609" modified="2016-01-20" version="1">MRNEEPPPTAKGDDADPESVARKILLDQLSIKARSRHELEERLAKKLVPDEIAERLLDRFEEVGLVDDEAFARAWVEGRQRSRGLARTAIAVELRRKGIADETAKAVLAEVDPDDEEAAARQLVRKKLRSMRGLDEQVAARRLVGMLARKGYSAGLAYAVVRQELALQDDADAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V654</accession>
    <name>A0A0Q8V654_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NADH:ubiquinone oxidoreductase subunit M</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_10000</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 3">Membrane</location>
            <topology evidence="1 3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the complex I subunit 4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894679.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52744">
        <property type="protein sequence ID" value="KRC52744"/>
        <property type="gene ID" value="ASE19_10000"/>
    </dbReference>
    <dbReference type="OrthoDB" id="535707at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010227">
        <property type="entry name" value="NADH_Q_OxRdtase_chainM/4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003918">
        <property type="entry name" value="NADH_UbQ_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001750">
        <property type="entry name" value="ND/Mrp_mem"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43507">
        <property type="entry name" value="PTHR43507"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00361">
        <property type="entry name" value="Proton_antipo_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01437">
        <property type="entry name" value="NUOXDRDTASE4"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01972">
        <property type="entry name" value="NDH_I_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0830">Ubiquinone</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="27"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="68"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="130"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="162"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="209"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="243"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="272"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="301"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="328"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="370"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="404"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="445"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="domain" description="Proton_antipo_M" evidence="6">
        <location>
            <begin position="126"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="485"/>
            <end position="508"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="508" mass="53784" checksum="449320AC8EFFFFB6" modified="2016-01-20" version="1">MLSLLVWLPIVGAVAVAFAPRSLSKTLGLGIALATLVVGVVAAARYDVDGGRQFTETREWIEAFGVHYALGLDGLGLLMVLLTVLLVPLVLGAEWFKADDPEGGGARAFVAWALALEGLSLAVFCATDVFLFYVVFEATLIPAYFLVGSFGREGRGQAALKFLMFQLAGGLILLASVIGLYVVSSQQGSPSYLLSDLEKLDIGTEPGRWLFLGFFIAFAIKAPLFPVHTWLADTTEKATPGTGVLLVCILDKIGTFGMLRFCLGIFPEASQWATPLVITLALISIVYGALIAIGQDDIFRLIGLTSLSHFGLITLGIFTMSTQGGTGSILYMVNHGLGTAALFLVAGYLHERRGTSLISEMGGIEKVTPVLAGLFLVAGLATLGLPGLSPFVSEFLVLLAAFGYAWYVGAIAITAVVLAAIYVLWMYQRTMTGPTPPEVEGTKDLGLREIAAVAPLVAALVFFGFYPAPLTDVSNPTVGDLLHGQVGVDDDPPTVDPAQVEHDVEEGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V740</accession>
    <name>A0A0Q8V740_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18500</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48903">
        <property type="protein sequence ID" value="KRC48903"/>
        <property type="gene ID" value="ASE19_18500"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidase" evidence="1">
        <location>
            <begin position="26"/>
            <end position="457"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="483" mass="51413" checksum="897D8F97CD5DA561" modified="2016-01-20" version="1">MVSEIWKLSATQVAHAIAEGDISSREAVEASLERLAQVEPHLNAFSDHVADAVRHADEADVRRARGESLGALHGVPIAVKENHDLVGFPTTHGVPALRDAVPARRNGPPVERYVEAGAVIIGRTRMPPFGQRWTTQSDFYGPTRNPYDPSVTAGGSTGGGAAAVAAGVVSIAQGNDMGGSLRYPASVCGVTALRPTVRKVPWWTSGENEGIRLASREFLVDGPLARNVADLRLALSVIARPDARDPEATPGHALPATDSPRIGVVVDPGDMPFAGASSPEVDASLRAAAATLRSCGYEVDEISVPALGEAAGLWLQMTFEDYGVASFASELDAFGDDGMRFKWNAVTRLVREEFGDRSLEGYLAAVQRRSLLRRTISELMVDYPVLLLPNSGEEPFGLGGDVTSLDRVRELLRSQWPSLSVPFMALPGVGLATQPRAGRAPLGVHLIGRAFDEETILRVAEQIEATTSFGEPVDPVLPVGSRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V768</accession>
    <name>A0A0Q8V768_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Apolipoprotein N-acyltransferase</fullName>
            <shortName evidence="8">ALP N-acyltransferase</shortName>
            <ecNumber evidence="8">2.3.1.269</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">lnt</name>
        <name evidence="10" type="ORF">ASE19_16440</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the phospholipid dependent N-acylation of the N-terminal cysteine of apolipoprotein, the last step in lipoprotein maturation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>a glycerophospholipid + N-terminal S-1,2-diacyl-sn-glyceryl-L-cysteinyl-[lipoprotein] = a 2-acyl-sn-glycero-3-phospholipid + H(+) + N-acyl-S-1,2-diacyl-sn-glyceryl-L-cysteinyl-[lipoprotein]</text>
            <dbReference type="Rhea" id="RHEA:48228"/>
            <dbReference type="Rhea" id="RHEA-COMP:14681"/>
            <dbReference type="Rhea" id="RHEA-COMP:14684"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:136912"/>
            <dbReference type="ChEBI" id="CHEBI:140656"/>
            <dbReference type="ChEBI" id="CHEBI:140657"/>
            <dbReference type="ChEBI" id="CHEBI:140660"/>
            <dbReference type="EC" id="2.3.1.269"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Protein modification; lipoprotein biosynthesis (N-acyl transfer).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the CN hydrolase family. Apolipoprotein N-acyltransferase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.269" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893662.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50193">
        <property type="protein sequence ID" value="KRC50193"/>
        <property type="gene ID" value="ASE19_16440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1291198at2"/>
    <dbReference type="UniPathway" id="UPA00666"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016410">
        <property type="term" value="F:N-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042158">
        <property type="term" value="P:lipoprotein biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07571">
        <property type="entry name" value="ALP_N-acyl_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01148">
        <property type="entry name" value="Lnt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004563">
        <property type="entry name" value="Apolipo_AcylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045378">
        <property type="entry name" value="LNT_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20154">
        <property type="entry name" value="LNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00546">
        <property type="entry name" value="lnt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 10" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="35"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="74"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="142"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="175"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="domain" description="CN hydrolase" evidence="9">
        <location>
            <begin position="200"/>
            <end position="453"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC50193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="507" mass="53998" checksum="7FDE9D58576FD53A" modified="2016-01-20" version="1">MLQRSFLAVLGGVLLTASFEPLALAWLLPLGVAGFALVTAGLSVRRAGVVGLVFGIAFYFSHIEWMRASVGPDAWVALSAVEAAFYGLMGVATPLLRRLPLWPVWMAATWTTMETVRSGWPFSGMPWGRLAFAAIDTPAAPAVAYVGMTGLSFLLALLGFLLAQAVEKRTLRDTGALVGLLAIMVVPAVWPITLAQSGTATVAVVQGDVPGPGNDILWDPRGVTENHVDATVKLAADVSAGKVAAPDFVLWPENSTAVDPFEDLPVNSGINEAVSAIGVPVVVGGIVDEGEKYVLNQGIVWDPVSGPGDRYTKHHPVPYGEYIPFRDLWDPKFGQLALITRDMKSGTRTEPLRVAGLRVSDAICFDVAYDDVMPPQVRDGAELLTVQTSNASFIFTHQIEQQFAITRLRAIEAGRWLTVASTNGRSGVIRPDGSVAATAGIRSTSVLVEKVGLSTELTPAMWLGAWPTRLFTGSTLGALVAGAIAYRRRREFAGPVEVPAKEPTDAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7M0</accession>
    <name>A0A0Q8V7M0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13485</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895820.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53358">
        <property type="protein sequence ID" value="KRC53358"/>
        <property type="gene ID" value="ASE19_13485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2063244at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="132" mass="13967" checksum="D909EA86B21212DE" modified="2016-01-20" version="1">MSPKKLATKPADLPWGRARRIVAQKYREIAEVAEVEDGAAINVCVGLCVLAGIAASDAICAAAGGERYSGTDHSAAADLVARHDAEAAKHLRTLIAFKPAAHYGKDLLKESDRRAAMRASAALVEEATRRTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7Y9</accession>
    <name>A0A0Q8V7Y9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15550</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893503.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50034">
        <property type="protein sequence ID" value="KRC50034"/>
        <property type="gene ID" value="ASE19_15550"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1526822at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="328" mass="36481" checksum="44EAF8BD2FD01884" modified="2016-01-20" version="1">MDIHPFGPDDAAEVAAWAELANAVAAADAPWSYPTTPTLVRGRLAHGWDGEPESPYLVRVAGTAVAAGSISTSDYDNLDLAVLHVEVHPGHRRRGHGTALLEVLLDEARRRRRTSLVAECWDAEPGDAFARQHGFVRKLAAINRRQYLADVDRPTLTQQYDAALPHARDYVLERWPVPTPDDRLDDLAVMASAINDAPLDDLDYEDEVFTADRMRAYEVATAGRGERMYRLVARHRATGVLAAQTVVAVETADPRRAHQHDTSVTRAHRGHRLGLVLKTEMLPWLAEAEPALETVETWNAESNDHMIGVNEVLGYRVLGREWAYQRAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V829</accession>
    <name>A0A0Q8V829_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13535</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895830.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53368">
        <property type="protein sequence ID" value="KRC53368"/>
        <property type="gene ID" value="ASE19_13535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1826003at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019292">
        <property type="entry name" value="McrC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38733">
        <property type="entry name" value="PTHR38733"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10117">
        <property type="entry name" value="McrBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="389" mass="43001" checksum="5463C1435534EA7B" modified="2016-01-20" version="1">MEPLTLTEGEPAKAVRLSNAEAEALDVAELAVVTRAPGSDDWLVAAGTKVGVVRVGSLQISIRPKISIERLVFLMGYATKPKFWRDHSVRLDVESDLPEALAHAFTRLAGRAIEQGLLQGYRTVDDSLPVLRGRIRVRDQISRRYGVGLPLEMTYDDFTVDIAENQILLATTIRLLRMNGLSATVRQRLQRLRLQFAGVTEVRRGDLVPSWQATRLNTRYHPALHLAALILAGDSFEQRVGDLEVSGFVFDMWKIYEDFVSVALGEAMAPLGGSASLQHRMHLDEADQVQMRPDFVWTGFDGRRVVVDAKYKAEKPVGFPQADLYQLLAYCTVLGLAEGHLVYAAGNERAVEHTVRGAGVAITCHTLDLDQPPDQLLELVAELAEVLVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V893</accession>
    <name>A0A0Q8V893_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Oxygen sensor histidine kinase NreB</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Nitrogen regulation protein B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_14265</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Member of the two-component regulatory system NreB/NreC involved in the control of dissimilatory nitrate/nitrite reduction in response to oxygen. NreB functions as a direct oxygen sensor histidine kinase which is autophosphorylated, in the absence of oxygen, probably at the conserved histidine residue, and transfers its phosphate group probably to a conserved aspartate residue of NreC. NreB/NreC activates the expression of the nitrate (narGHJI) and nitrite (nir) reductase operons, as well as the putative nitrate transporter gene narT.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897005.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53498">
        <property type="protein sequence ID" value="KRC53498"/>
        <property type="gene ID" value="ASE19_14265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017205">
        <property type="entry name" value="Sig_transdc_His_kinase_ChrS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037434">
        <property type="entry name" value="STHK_ChrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="13" id="KW-0418">Kinase</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <keyword evidence="11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="25"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="49"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="86"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="118"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="149"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="12">
        <location>
            <begin position="193"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00030800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC53498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="41487" checksum="35B80C355FD38F0F" modified="2016-01-20" version="1">MSLLSSVRRPGEHGILAPAARLDRWLLVVLVVLLVTCAVRYVDRHGLHATGIAVLAGALALGLAYATRGLLRGRPWWPTAWVSAMVVLWGLLTAVAPSFAWCAVPVAFAVLQVLPFSWAVGTVVAMTLLLTAAWQRLDGSWADGVDPVQVAGPIGIALVTVLAYRALDLESRARQLAQAEVGALAERTRLSREIHDSVGQGLSSINLLLQAAEQAWDGQPSTAREHVRTAAATARDGLDEVRRVVRDLAPAELTDDRTGEALVEALRKAAAEAVQASPGLDVAVRVHGSPVSVPPAVAAALVRTARGALANVREHAAAGRAAVTLTYQLDEVTLDVRDDGRGFDPSAVGPSGTRGRGIAGMRDRAAGLGGRTEVESAPGEGTTVSVCFPVRGEDVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8N5</accession>
    <name>A0A0Q8V8N5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MerR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14725</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896926.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53576">
        <property type="protein sequence ID" value="KRC53576"/>
        <property type="gene ID" value="ASE19_14725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1677723at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="9"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="16910" checksum="A4FACE3AF2D0B266" modified="2016-01-20" version="1">MKSSPRDVRWSIGDLADRFDLETHVLRYWEDCGLLHPDRDSAGRRVYGEVDAYRVATILVSKASGMSLDQIRTLVDASAEGRRDALRAHLVELDRRQAEIERSRHMTNHALECRAHDITACPGFQAHVEDIVEGTTRGLPLSDPHSSGHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8R9</accession>
    <name>A0A0Q8V8R9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cytochrome</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14520</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897134.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53692">
        <property type="protein sequence ID" value="KRC53692"/>
        <property type="gene ID" value="ASE19_14520"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002397">
        <property type="entry name" value="Cyt_P450_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00359">
        <property type="entry name" value="BP450"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0349">Heme</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="417" mass="45462" checksum="C31790E67F70F88E" modified="2016-01-20" version="1">MRNGIDLRKLRFLPESVTLPLKREGLDPLPEMRKVQAEEPVKKLAELFGKSVWLVSGYDESREVLAGGADVWSNDLGQFVSQEGRSDEEQIGGLGMTDPPLHTALRRYLTPEFTMRRLARLQPGIEQVVAQRLDAMEAAGRDGKAVDMVEEFAFAVPFDVICDLLGLPVDDRGRFLELGVARFDLSGGGAGAFGAAAHTREFLINAVREQRENPGDGLIGALLKEHGDELDDVTLGGIADGVFLGGYETSASMLALGAYLIATTPKAGEMLRSDDAEQVNQVVEELLRHLCVVQLAFLRFAKQDVEVGGRLIKEGDAVGVSLLAANRDPRLAPGLDDFDPTREPTRHLAFGWGMHRCVGAELARMELRTALRMLAERFPNLAMAADISELDFRKLSAVYGVEALPVLLDGDRVSVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8T1</accession>
    <name>A0A0Q8V8T1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Peptidase M3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_14645</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the peptidase M3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896939.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53563">
        <property type="protein sequence ID" value="KRC53563"/>
        <property type="gene ID" value="ASE19_14645"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1935578at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024077">
        <property type="entry name" value="Neurolysin/TOP_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045090">
        <property type="entry name" value="Pept_M3A_M3B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001567">
        <property type="entry name" value="Pept_M3A_M3B_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11804">
        <property type="entry name" value="PTHR11804"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01432">
        <property type="entry name" value="Peptidase_M3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 7" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2 7" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M3" evidence="9">
        <location>
            <begin position="213"/>
            <end position="642"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="8">
        <location>
            <begin position="139"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC53563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="649" mass="72986" checksum="8C398177246BADCF" modified="2016-01-20" version="1">MTLDPLVLPTAPDAWPDWIRDRSSAELARATELVDGLRSTTPSDPIDVLRQWDRAGSHLGNVAAFGSLLGNVHPDERARELADAAEQEASRLGTQWSLDRELYDVFAAIDPGAVAGDPLAVRLLEKVRADFRRSGVDKDEATRERIAAVRERITELDQEFSRVTRDDVRTIRVRPEQLAGMPADWLEAHPADDDGLVTVTTDYPDSVPVRMFAHDQDVRRDITIAFLERGWPATEELLTELFDLRHELATTVGYADWPSYDADVKMIGEGPAIPAFIDRITEAAEEPMQRDLGQLLERYRRDFPSATEVPGYDYQYYAELVRSERYDVDSQRVRTFFDFGKVRQGLLEVTGRLFDLSYEPVDVPVWHEDVTAYEVVRAGGRIGRIYLDLHPREGKYKHAAQFTLTDGVAGEQLPEGVLVCNFSRGLMEHDHVVTLFHEFGHLLHHVLAGHGDWFRFAGVATEWDFVEAPSQMLEEWAWHADVLRSFASDESGEPIPADLVAAMRAADDYGKGIYARTQMFYAAMSYWFHADRGLAQVPDLTERMIELQGRYAALPYLPGTHMFASFGHLGGYSSAYYTYMWSLVIAKDMFSAFDPDGTGDLFAAAAIDMAHRYRDAVLARGGEADAADLVADFLGRPFAFDAYAAWLAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V920</accession>
    <name>A0A0Q8V920_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11695</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the adenylyl cyclase class-3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895198.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53643">
        <property type="protein sequence ID" value="KRC53643"/>
        <property type="gene ID" value="ASE19_11695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1635706at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004016">
        <property type="term" value="F:adenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009190">
        <property type="term" value="P:cyclic nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07302">
        <property type="entry name" value="CHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001054">
        <property type="entry name" value="A/G_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00211">
        <property type="entry name" value="Guanylate_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00044">
        <property type="entry name" value="CYCc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50125">
        <property type="entry name" value="GUANYLATE_CYCLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="33"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="70"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="119"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="151"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="204"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="236"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="4">
        <location>
            <begin position="260"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="domain" description="Guanylate cyclase" evidence="3">
        <location>
            <begin position="347"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="524" mass="55360" checksum="B000AAAF25264C72" modified="2016-01-20" version="1">MPTTTAARRSPFGSRLLGPRDQSPRGLRIRIQLLLTFLLIITNVIGVVLVFAISIWVIPSPPPTDAMVVALAIAVPVYVAVAVAVGTAWGTTTSLGALRWATDPTVDPDRTQRERALRVPFWLTTMQLVLWTTGTVLFTVLSVVLQPSRALGTGLTVGITTVIVAGVAYLLTEFALRPVAARALSDVRVTGRLRGAGVGPRQAIFWWLGTGAPTVGLLITAILALTPRNDATLNQLAVVTIVVCGVVLVFGFLLTDLNARSVVAPIISVRDAMRAVERGDLDTDVVVYDGTELGQLQSGFNDMVSGLQEREQIRDLFGRHVGQEVAAAAAALGAGEIELGGETRTCSVLFVDLVGSTTYATEHGPTQVVAVLNRFFGVVVDEVDRHHGLVNKFIGDAVLAIFGAPVEHADHASAALEAARAMAARLAVEVPEVGAGIGVATGQVVAGNVGHEQRYEYTVIGDAVNSAARLTDLAKDVPGCVLAAWDSVEAARADGSPEAEHWVEHGETTLRGRTTTTRLAVPRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V957</accession>
    <name>A0A0Q8V957_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07325</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895318.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53886">
        <property type="protein sequence ID" value="KRC53886"/>
        <property type="gene ID" value="ASE19_07325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="681351at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025101">
        <property type="entry name" value="DUF4012"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13196">
        <property type="entry name" value="DUF4012"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="615" mass="66118" checksum="EED203A12303F9DE" modified="2016-01-20" version="1">MTEEVRRQRRRRSKPLTPMERFRRRLRHVVTGQSRGALVVIGLVVLAVLWVGWTLWSTNRALQEVSDQARVMKAALVRGDAEGARSAMTAYQDAAETAESRTGGPTWSVLELTPLFGDDLKGIEVASDVLADIGRDGLPPIADAADLVAAQTFQPTNGAFPVDRIAAMAGPAQQSERAFDDAASALGQVDSDHFIGPVRGQYEQLRDLVTDARSTLGSTYRAAKIIPQMMGTDRPRYYLMVMQNNAEIRSSGGLPGSLSLVEMKNGRVDIVEQVDMADLGGDTAPVIALTAEEKRIFGQRLERLAVNATLTPDFVRASEIIRARWELKVGGHLDGMFYVDPVAVSYLLRGTGPVNVPGYPAVNAANVVWGVENQIYVLSNDRRVHSAYQEAVAKAVFNAFAAGRGNSVESIRGLVTAVMEGRIRMHSFDPEQQAVIAGTTIAGEFSDEASNDPGVGLYLNDGGPTKMQFYLKYDASIFARSCIGDRQVIAGSIELHSDTPPNAADLPPSITGFGLPGQRVASGDQLVVLYVTTPVGGDVEELSIDGQRIARPVVERLAGRGLARVGILFAPQERHTVEFVLRAGPGQTGDIHLSVTPGAFPGSSNETVGSSCVVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V977</accession>
    <name>A0A0Q8V977_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Polysaccharide deacetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12425</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53652">
        <property type="protein sequence ID" value="KRC53652"/>
        <property type="gene ID" value="ASE19_12425"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002509">
        <property type="entry name" value="NODB_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01522">
        <property type="entry name" value="Polysacc_deac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51677">
        <property type="entry name" value="NODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NodB homology" evidence="1">
        <location>
            <begin position="5"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="185" mass="21098" checksum="CC9215B72286AAF1" modified="2016-01-20" version="1">MPYRGTVYLTFDDGPDPRWTPQVLDILRRHGIEAVFFEVGTSVAAHPGLVRRVRREGHLIGNHTWNHASLTTLRGRAIRAQLDRTERALGERPRCVRPPYGAHDARVDEVIRSRGQRVMLWTVDPQDWARPGADRIVRRILREVEPGARILMHDGGGDRSQTVAALERVITRLQARGYRFGLLDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V987</accession>
    <name>A0A0Q8V987_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_12820</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895843.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53663">
        <property type="protein sequence ID" value="KRC53663"/>
        <property type="gene ID" value="ASE19_12820"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="64" mass="6913" checksum="D843235EE425D545" modified="2016-01-20" version="1">MQIVADKARCEGLGMCESMANDYFEVDEDEELVTVLDANPPEADRAHVFAAVQACPVLALTLEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9U3</accession>
    <name>A0A0Q8V9U3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Amino acid permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_07245</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895303.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53871">
        <property type="protein sequence ID" value="KRC53871"/>
        <property type="gene ID" value="ASE19_07245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="527053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="24"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="61"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="101"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="143"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="167"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="221"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="263"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="314"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="372"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="398"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="439"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="481"/>
            <end position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="522" mass="54849" checksum="01AF9ADEFA2C8CC0" modified="2016-01-20" version="1">MSAEETRAASESEKGVQRLKPNAVGLLGVMFMAVATAAPITAMVGNVPIAIGFGSGANAPAGYFLATIVLGLFALGYSAMAKHITSTGAFYGFISHGLGRVVGMGAGALTTLAYVVFEAALVGIFSFFAASFFSAHTGLDISWIWYALLMLGVNALLTYFDINLTAVVLGGFLVTEVVMLGAMTVSILVSGGGPQGWSLGSLNPLNAFQGLSGSVTHPDTGATLAVAGTAGIGLFFAFWSWVGFESTAMYGEESRNPKKIIPLATMLSVLGIGGFYVIVSWSAIVGTGPENSVALAQDSSTAAQIFFGPVEQHLGHWAVVLFEFLLMSGSYACGMAFHNCASRYIYAIGREDLVPGFGRTLGAAHPVHGSPYIAGFAQTTVATLIVLAFYVTDRDPYAQLYALMAILGTTAILIVQALAAFACIFYFHVQGKHPETANWFRTCVAPLIGGIGMVYVIWLLIENAGFAAGAAASDVVFKLSPWIVAVVGLSGLGFAFWAKRFAPERYDTIGRVVLEDTQERAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Y2</accession>
    <name>A0A0Q8V9Y2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">APH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08755</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895565.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54133">
        <property type="protein sequence ID" value="KRC54133"/>
        <property type="gene ID" value="ASE19_08755"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1457558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="174"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="395" mass="43770" checksum="4104B8193E3AEE83" modified="2016-01-20" version="1">MALRDTLSVASMVGHVAATVALERVGPPPRLDRPGAVPPRAEAVTTAWLTEVLCGEAAGATVTDVEILGGSDGTSSRRALRVTYNEAGRAAGLPTRLFSKAAAGLFSRILLGLTDIAEGEALFYNRARPGLELRSPRAFHAGFDPRSRRSFVLLEDLSVAGWTFPDPEQNTVTRADAEDMVAELASYHADFWASPRFSADLSALKPARRWQDDLDRRASFRARTLRGFDRALEVLPERMTARRAEVYPAFHRALDLHARGPETLLHQDLHLGNWLRDPDGRMGLYDWQCVARGHWALDYSYAMAGALEPADRREWEEDLLRTYLARLRDAGVDAPSYDAAWLAYRQQPMHAFAFGLFTLGGNRFEPELQPREYTLAAIGRIGAFLDDHATLDALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Z8</accession>
    <name>A0A0Q8V9Z8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fur family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07660</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Fur family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895378.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53947">
        <property type="protein sequence ID" value="KRC53947"/>
        <property type="gene ID" value="ASE19_07660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1630127at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07153">
        <property type="entry name" value="Fur_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002481">
        <property type="entry name" value="FUR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043135">
        <property type="entry name" value="Fur_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33202">
        <property type="entry name" value="PTHR33202"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01475">
        <property type="entry name" value="FUR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="140" mass="15031" checksum="B0F57CF6405932BE" modified="2016-01-20" version="1">MTGTDERPTALRPTRQRLAITAALSDAVDFQSAQEIHDVLRRGNDKVGLATVYRTLQAMAESGEVDVRHGPAGEASYRRCSASHHHHLVCRSCGRTVEITGSAVEKWAHAVADEHGFTDVAHTVELIGLCADCSAAARGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA12</accession>
    <name>A0A0Q8VA12_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="17">UDP-N-acetylenolpyruvoylglucosamine reductase</fullName>
            <ecNumber evidence="17">1.3.1.98</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="17">UDP-N-acetylmuramate dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="primary">murB</name>
        <name evidence="19" type="ORF">ASE19_09805</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19 20">Root79</strain>
        </source>
    </reference>
    <reference evidence="19 20" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19 20">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 17">Cell wall formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 17">
            <text>NADP(+) + UDP-N-acetyl-alpha-D-muramate = H(+) + NADPH + UDP-N-acetyl-3-O-(1-carboxyvinyl)-alpha-D-glucosamine</text>
            <dbReference type="Rhea" id="RHEA:12248"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:68483"/>
            <dbReference type="ChEBI" id="CHEBI:70757"/>
            <dbReference type="EC" id="1.3.1.98"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 17">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5 17">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4 17">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6 17">Belongs to the MurB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.98" evidence="17"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894650.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52713">
        <property type="protein sequence ID" value="KRC52713"/>
        <property type="gene ID" value="ASE19_09805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="841869at2"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008762">
        <property type="term" value="F:UDP-N-acetylmuramate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.78.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00037">
        <property type="entry name" value="MurB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003170">
        <property type="entry name" value="MurB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011601">
        <property type="entry name" value="MurB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036635">
        <property type="entry name" value="MurB_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21071">
        <property type="entry name" value="PTHR21071"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02873">
        <property type="entry name" value="MurB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56194">
        <property type="entry name" value="SSF56194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="15 17" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8 17" id="KW-0132">Cell division</keyword>
    <keyword evidence="12 17" id="KW-0133">Cell shape</keyword>
    <keyword evidence="16 17" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7 17" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10 17" id="KW-0274">FAD</keyword>
    <keyword evidence="9 17" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="11 17" id="KW-0521">NADP</keyword>
    <keyword evidence="14 17" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13 17" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="18">
        <location>
            <begin position="14"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="active site" evidence="17">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="17">
        <location>
            <position position="240"/>
        </location>
    </feature>
    <feature type="active site" evidence="17">
        <location>
            <position position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00010485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="KRC52713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="343" mass="35722" checksum="A4E51295105A5386" modified="2016-01-20" version="1">MPDPALADLTTLRLGGPARRYVAAPDADALVAAVSEADAAGEPVLLVGGGSNLVVADEGFAGTVVHLTGGGVRVEDDACGVTTVTVAAGEPWDDFVARAVAEGWPGVEALSGIPGTAGATPVQNVGAYGQEVAQTIARVRVWDRVLRGQRTFTAAECQFAYRHSRFKADPARHLVLDVTFELHPGELSTPVAYAELARTLGVEPGGRAPLADVREAVLGLRRGKGMVLDAADHDTWSAGSFFTNPFVEPSRVPEGAPSYPQADGSVKTSAAWLIEHAGFGKGHGLDRPGARVSLSTKHTLALTNRGGATTAELLDLAREVRDGVRERFGITLVNEPVLVGATL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA36</accession>
    <name>A0A0Q8VA36_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA(Ile)-lysidine synthase</fullName>
            <ecNumber evidence="6">6.3.4.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">tRNA(Ile)-2-lysyl-cytidine synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">tRNA(Ile)-lysidine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">tilS</name>
        <name evidence="8" type="ORF">ASE19_08075</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP + cytidine(34) in tRNA(Ile2) + L-lysine = AMP + diphosphate + H(+) + lysidine(34) in tRNA(Ile2)</text>
            <dbReference type="Rhea" id="RHEA:43744"/>
            <dbReference type="Rhea" id="RHEA-COMP:10625"/>
            <dbReference type="Rhea" id="RHEA-COMP:10670"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="ChEBI" id="CHEBI:83665"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.4.19"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="6">The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a P-loop motif involved in ATP binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the tRNA(Ile)-lysidine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.19" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895454.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54022">
        <property type="protein sequence ID" value="KRC54022"/>
        <property type="gene ID" value="ASE19_08075"/>
    </dbReference>
    <dbReference type="OrthoDB" id="666797at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016879">
        <property type="term" value="F:ligase activity, forming carbon-nitrogen bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01992">
        <property type="entry name" value="PP-ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01161">
        <property type="entry name" value="tRNA_Ile_lys_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011063">
        <property type="entry name" value="TilS/TtcA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012094">
        <property type="entry name" value="tRNA_Ile_lys_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012795">
        <property type="entry name" value="tRNA_Ile_lys_synt_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43033">
        <property type="entry name" value="PTHR43033"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01171">
        <property type="entry name" value="ATP_bind_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02432">
        <property type="entry name" value="lysidine_TilS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="ATP_bind_3" evidence="7">
        <location>
            <begin position="27"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="32"/>
            <end position="37"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC54022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="342" mass="36358" checksum="29AD4C7015D22B35" modified="2016-01-20" version="1">MGLHPAVAAVRQGVRRALTRHDAGHAVLVACSGGADSLALLSAAVFEGRKQGLRVIGVTVDHGLQEGSAEHAARVVQQMAVLGVDETAAARVQVDPAGLGMEAAARRARYDVLEQMRAHFGAVGVLLGHTRDDQAETVLLGLARGSGARSIAGMRRAFDHYERPLLDVARADTVAACLAEGIEFWDDPHNADPGYARVRVRQRVLPVLEDELGPGIAATLARTADQVRADVEALDALADAAYQRISTQRHRFRGLEPTEPMTQAPELPLDELDELLPALATRVLRLAALAAGARDAELFHVHVTALHQLAQGAISGEVQLPGHVTAYRDGAHLCFRPTPVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA52</accession>
    <name>A0A0Q8VA52_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Ring-hydroxylating oxygenase subunit alpha</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_08705</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895556.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54124">
        <property type="protein sequence ID" value="KRC54124"/>
        <property type="gene ID" value="ASE19_08705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="275867at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015881">
        <property type="entry name" value="Ring-hydroxy_dOase_2Fe2S_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015879">
        <property type="entry name" value="Ring_hydroxy_dOase_asu_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001663">
        <property type="entry name" value="Rng_hydr_dOase-A"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43756">
        <property type="entry name" value="PTHR43756"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00848">
        <property type="entry name" value="Ring_hydroxyl_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00090">
        <property type="entry name" value="RNGDIOXGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00570">
        <property type="entry name" value="RING_HYDROXYL_ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rieske" evidence="7">
        <location>
            <begin position="50"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC54124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="429" mass="47792" checksum="1713A0ED90AE6413" modified="2016-01-20" version="1">MTAVVPSASEVEEGGSRYDRLIQPARVHGTLYTDPSIYAEELRKIWHRTWVFVGHESEVPQPNDYVRKQLADQDVVMTRDKDGEVHLLINRCAHRGLQVCDDQAGNSSSFRCPYHGWTYRNTGELLGYPYNKGYGGKNQLPLGMGKVARVDSYQGFVFGSLAEDGPSLDEHLGAAKGEIDRLVGLSPEGRVALDAGWLRHRTRANWKFLAENETDGYHPQFVHGSIFGVTGSPIGALYSDNSTAVTRNLGDGHSENDLRPEFREFAEPMRWFGTTPDRVPSYVQAMKDAFGEDEANRRMIEGAPHVMIFPNLFIAEIQVFNIQPVGVGECVQYSTAVQIDGGHELNQRMVSQSIGSVGPAGMLLADDTEMYERNQRGVAMADPEWLDVRRGLVRESVDADGFTIGAATDETGMRGFWNHYKSLMEAEDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAH3</accession>
    <name>A0A0Q8VAH3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L33</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpmG</name>
        <name evidence="5" type="ORF">ASE19_08455</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the bacterial ribosomal protein bL33 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895516.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54084">
        <property type="protein sequence ID" value="KRC54084"/>
        <property type="gene ID" value="ASE19_08455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2034291at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00294">
        <property type="entry name" value="Ribosomal_L33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038584">
        <property type="entry name" value="L33_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001705">
        <property type="entry name" value="Ribosomal_L33"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018264">
        <property type="entry name" value="Ribosomal_L33_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011332">
        <property type="entry name" value="Ribosomal_zn-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00471">
        <property type="entry name" value="Ribosomal_L33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57829">
        <property type="entry name" value="SSF57829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01023">
        <property type="entry name" value="rpmG_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00582">
        <property type="entry name" value="RIBOSOMAL_L33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="56" mass="6552" checksum="B71B0E707D4C087A" modified="2016-01-20" version="1">MASKSSDVRPIVKLRSTAGTGFTYVTRKNRRNDPDRMVLSKYDPVVRRHVAFREER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAQ3</accession>
    <name>A0A0Q8VAQ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MarR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08475</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895646.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54214">
        <property type="protein sequence ID" value="KRC54214"/>
        <property type="gene ID" value="ASE19_08475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1681849at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="11"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="154" mass="17372" checksum="19DD21F9172FE0C7" modified="2016-01-20" version="1">METTTWLDDDEQRAWRGFLDVHAQLNAAINRQLQSTTGLSLSDYAILVELTSDVAPDGSLRMFELGERLQWEKSRVSKQVSRMEARGLVERRHCADDRRGAFVDLTPEGRAAIEAAAPAHVELVRDLFFEGATRDQVRALGDFTERVLGRLSSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAU6</accession>
    <name>A0A0Q8VAU6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mammalian cell entry protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08965</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895660.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54228">
        <property type="protein sequence ID" value="KRC54228"/>
        <property type="gene ID" value="ASE19_08965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="17"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="400" mass="41647" checksum="599ACEF9A9CB11B6" modified="2016-01-20" version="1">MPLAVVAAASLAAIGRDGYQVQVTLESATNVVEGSPVQVNGFDAGRVEKIEVVDGAARLTLSLDDDIAPLHSGAVVLVGWKATLSERLVEVTDGSGKNAEIPDGGLLPGTMPAPTEIDDVLNSLDAKTRAHLQSLFGNLGEVLAGKEGDYAATIRTGGPALRELGQLLKALGTDGPAIKHLAQRLDDLLGIVAERDSEVQSVVSSLSGLTDRVAGQRTQLRATLKALPGTLRQADRTLSDVPGAVDDVVPLLQDLEPATAKLGPVAKDLAPLLQDLRPLSADLRPALGSLDSLLQVAPGLFDTVGAVTPQTRSVLGDVREPIAFLRPYTPEVAGFFSTWASAFSNYDSNSNFARIHGQAGLTSLNENPGVVPPGVTFDPYPSPGEIVGQGWTDANGSELE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC61</accession>
    <name>A0A0Q8VC61_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Molybdopterin synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04500</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894337.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54744">
        <property type="protein sequence ID" value="KRC54744"/>
        <property type="gene ID" value="ASE19_04500"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1877633at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00756">
        <property type="entry name" value="MoaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036563">
        <property type="entry name" value="MoaE_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003448">
        <property type="entry name" value="Mopterin_biosynth_MoaE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02391">
        <property type="entry name" value="MoaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54690">
        <property type="entry name" value="SSF54690"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="142" mass="14975" checksum="6DB23E41C651BCBE" modified="2016-01-20" version="1">MPHPAVRLVAISEEPLSVADVLDSLEDGTAGGLVLFVGRVRDHDHGQGVTGLSYSAHPSALGRLQEVCDRVAGEYDVTGVAAVHRVGDLEIGDLAVVVATTAGHRGSSFEASRALIDTLKAEVPIWKHQRFVDGSDEWVGSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC75</accession>
    <name>A0A0Q8VC75_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acetoin utilization protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04295</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the histone deacetylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894372.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54708">
        <property type="protein sequence ID" value="KRC54708"/>
        <property type="gene ID" value="ASE19_04295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1443295at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.800.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000286">
        <property type="entry name" value="His_deacetylse"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023801">
        <property type="entry name" value="His_deacetylse_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037138">
        <property type="entry name" value="His_deacetylse_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00850">
        <property type="entry name" value="Hist_deacetyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01270">
        <property type="entry name" value="HDASUPER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="SSF52768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hist_deacetyl" evidence="2">
        <location>
            <begin position="48"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="377" mass="40934" checksum="196D3CFC35B34A28" modified="2016-01-20" version="1">MARRTGFVWHEKYAWFDLGNDAGFVHPDGMTIQPDTHVYDLEVVRRFRNLLDVSGLLDQLTRVTPRNASDAELGRVHTQEMIDATRAASEQPMGGEPGIFSPIPHGTFEIASLAAGGAIAAVEAVMKGDVDNAYALLRPAGHHAEPENSMGFCVFSNAAIATRHLLDELGVGRVALVDWDVHHGNGTQAALYEEPRALTISIHQERLFPPDNGFVEQIGAGEGEGANLNIPLPAGCSSAAYHEVYDRVVIPALRKFRPDFIIIPSGFDAGHMDPMGRMQMHSEGYRELTRKLMALADELCEGRLVFLHEGGYSRWTVPFYGLAVMEELSGITTGVVDPYQGWASTEGLGLVAHQSAAIDAAAVNLARVPDHSLPIHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC94</accession>
    <name>A0A0Q8VC94_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Macrolide ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13070</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895745.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53283">
        <property type="protein sequence ID" value="KRC53283"/>
        <property type="gene ID" value="ASE19_13070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1181903at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="8"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="44"/>
            <end position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="242" mass="25700" checksum="C88D4ACFDBAD894B" modified="2016-01-20" version="1">MSAREAVLRLTDVSRVHGSGANEVHALRSISFAAYPGELVAVMGPSGSGKSTLLTLAGGLDRPTSGMVTVEGTDLDRLSLDGRARMRRTSIGYVFQGFNLIPALTATENVALPRELDGVPARQAREDARRALAEVGIGELADRFPDDMSGGQQQRVAIARAVVGERRLILADEPTGALDTETGEEILRLLRARCDAGAAGVLVTHEARHAAWADRVVFLRDGVVIDETGADPVELLTEPAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCC0</accession>
    <name>A0A0Q8VCC0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05300</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894207.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54874">
        <property type="protein sequence ID" value="KRC54874"/>
        <property type="gene ID" value="ASE19_05300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="630753at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="7"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="496" mass="55156" checksum="DC0D6ECE851D5425" modified="2016-01-20" version="1">MSTHVHDAVIVGAGFGGMGAAIQLQRLGYDDLVILEREDDLGGTWHVNRYPGLAVDIPSTTYSYSFEPNPHWSRLFAPGAELKQYAEHVADKYDLRRRMRFDTVVDGARWDEETSTWHVAIEGGETVVGRFLVTATGFLSQPRLPDIAGVEDFAGTVMHTTRWDDDVDLQGKRIGIIGTGATAVQLIPELAKVADHLTVYQRTPIYVSPKLDGPVPGIVRGAFARVPLTQKAARLAGTSILELLMVAGVLHFKDLPAANQLGKRVCEAHLRRQVKDPELRAKLTPDYDFGCKRPTFSNTYFPTFTKPHVDLETTTIDHVDAGGIVTVDGYRADLDVLVLATGFNLWDVNFPAIEVIGREGRDLGKWWRETRFSAYEGIAVPRFPNFFSLNSPYSYSGLSYFTTIETQMAHMARLLEGMEKKGAGVFEVTERANTEFLDRMTGLLGNSVFNAGQCATARSYYFNQHGEAVLLRPTSTLSAHREAVRFPLDDYEFRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCI2</accession>
    <name>A0A0Q8VCI2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Methionine ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_05280</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894209.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54872">
        <property type="protein sequence ID" value="KRC54872"/>
        <property type="gene ID" value="ASE19_05280"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1058434at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033232">
        <property type="term" value="F:ABC-type D-methionine transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026253">
        <property type="entry name" value="ABC_MetN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018449">
        <property type="entry name" value="NIL_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43166:SF5">
        <property type="entry name" value="PTHR43166:SF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09383">
        <property type="entry name" value="NIL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="4 6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="2"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC54872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="341" mass="36560" checksum="98E8F7F20E46E649" modified="2016-01-20" version="1">MIEIAGLTKSYGSTTVLDGIDLTVDEGRIAAVVGPSGAGKSTLARCINLLERPTSGTIAVNGQDLTRLSRRDLREARRQIGTVFQSANLLRRLTAAQNVALPMRHAGLPDQEVRRRVAELLERVGMLHRANHYPSQLSGGQRQRIGIARGLALQPAVLLSDEATSGLDPETTLSILDLLAELRDDLGVTILVITHEMDVVRSVADLVAQLDHGRIVEQGTVSDVVRRSNSPLSRALLPMPPVAVDEQLRAWAVRYEGPEVSPVWLAQAGRELDTDVAVLAALVEAAGDHRVGRLTVGLDPQLDDRRVVEVLTRYGVVAEPVDRAVLRAVATGANVAAEGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCW1</accession>
    <name>A0A0Q8VCW1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pyridoxamine 5'-phosphate oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894074.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55000">
        <property type="protein sequence ID" value="KRC55000"/>
        <property type="gene ID" value="ASE19_06030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1953238at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="108" mass="11360" checksum="C4F39D6E73D4406B" modified="2016-01-20" version="1">MSIPVAPADLQQALTDFDSGYLLTTASSRVKVVTVDPEADTEGRLRIAGPGRGTLANLAQNPDTTVVFPPRERHGYTLLVDGTAQVDGEDVVVTATAAVLHRPAAHAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD95</accession>
    <name>A0A0Q8VD95_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF58 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06615</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894502.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55100">
        <property type="protein sequence ID" value="KRC55100"/>
        <property type="gene ID" value="ASE19_06615"/>
    </dbReference>
    <dbReference type="OrthoDB" id="848990at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002881">
        <property type="entry name" value="DUF58"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01882">
        <property type="entry name" value="DUF58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF58" evidence="1">
        <location>
            <begin position="184"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="441" mass="47781" checksum="768D98538304D38B" modified="2016-01-20" version="1">MAISGRVPLLLLLGLAAVVLRPEGSTVLLWLLGVLVMVGIDVLLAPVPSSVGIERRQPGTVRLGDPATGGLVLTAARGARVQVRDAWQPSAGASANRHRLRLRAGEPQRLTTPLLPRRRGDLRAAGVTVRAWGPLGLAARQRTYDVPGTVRALPPFESRKHLPSRLARLRDLDGRAAIRVRGQGTEFDSLREYVRGDDVRSIDWRASARTPHVVVRTWQPERDRRVVLVLDTSRTSAGRVARFPGDDAEDGMPRLDAAMDAALLLGSLAARAGDRIDFLAGDRRVRARQRVHGVRDVAARLQEQMADLEPALVEADWDTLAGAVQGFGRQRALVVLLTALEPSAIADGLLPVLPTLVRHHRVVVASVRDPELGRLADVSATERPTADTVYAAAAAEHELARRTRMREVLARLGVDVVDADAAQLPPALADHYLHLKAQGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDD7</accession>
    <name>A0A0Q8VDD7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Sulfate ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_09960</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the prokaryotic sulfate-binding protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894671.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52736">
        <property type="protein sequence ID" value="KRC52736"/>
        <property type="gene ID" value="ASE19_09960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1111285at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902358">
        <property type="term" value="P:sulfate transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005669">
        <property type="entry name" value="Thiosulph/SO4-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30368">
        <property type="entry name" value="PTHR30368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0574">Periplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359963" evidence="6">
        <location>
            <begin position="23"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="343" mass="36150" checksum="0DE28EE36DF04A08" modified="2016-01-20" version="1">MKRVIKAAALAMTGALALSACASTDGGSDDSGKTINIVGFAVPEAANKAAAEEFNKTEAGKDVTFSGSYGASGDQSRKVVDTKGKDTDYVVFSLEPDMTRLVDAGLVDESWNQGETKGIVSSSVAVIATQAGNPLGIKDWSDLTRDDVKIVTPDPASSGSAKWNVLALYTYAKSTGATEAEADAFLKKVFSRVTTWAASGREATEAFKKGVGNVLLTYENEAILAKQNGEDLDYVVPNHTFKIENPGAVLKDAAPVATDWLDFLLSDEGQLAFVSKGFRPVTGVDIAGVEVQGANDPANPFPAVADLSTAADLGGWSAINKEWFGKDGEKLRFDKLYAEATKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDE3</accession>
    <name>A0A0Q8VDE3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894653.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52717">
        <property type="protein sequence ID" value="KRC52717"/>
        <property type="gene ID" value="ASE19_09835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1239251at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020556">
        <property type="entry name" value="Amidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00571">
        <property type="entry name" value="AMIDASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidase" evidence="1">
        <location>
            <begin position="32"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="466" mass="49875" checksum="A17CAB744A92A0FD" modified="2016-01-20" version="1">MRVHSFSDDALGDLDAVGLAEHLGAGKVSPQEVVDAAIARLGKVDDSLNAMAYEAFQRARSEARASRPGSSFLAGVPTLVKDNVDVAGMPTRSGTDAWEPRPARKDGDFAAMYLATGMVPLGKSQLSEYGFSASAEHPRLGAVRTPWDTEHTAGASSSGSAALVAAGVVPIAHANDGGGSIRIPAAVNGLVGLKPTRGRLAQDKVFRDMPIRIISDGVVTRSVRDTAAFYREAERIHRTLELPPIGDLTRPGKRRLRIALNTSGVSRGADAATKALTEETAALLEDLGHTVTESDVPVGPSFADDFLLYWALLAQAMLALGRPTHGRTWDRSRHDNLTLGLARHARRNLHKVPGAITRLKRAAAQAELYYERYDVALTPTLATETPKVGHLDPTQSYDVIMDKLLDWVAFTPWQNVTGAPAISLPLATTATGLPQGMMFGAAPGHEALLIELAYELEEARPFARIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDR5</accession>
    <name>A0A0Q8VDR5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cold-shock protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_07565</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_038681651.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53929">
        <property type="protein sequence ID" value="KRC53929"/>
        <property type="gene ID" value="ASE19_07565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2034748at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04458">
        <property type="entry name" value="CSP_CDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012156">
        <property type="entry name" value="Cold_shock_CspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019844">
        <property type="entry name" value="CSD_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002059">
        <property type="entry name" value="CSP_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00313">
        <property type="entry name" value="CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002599">
        <property type="entry name" value="Cold_shock_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00050">
        <property type="entry name" value="COLDSHOCK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00352">
        <property type="entry name" value="CSD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51857">
        <property type="entry name" value="CSD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CSD" evidence="3">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="67" mass="7365" checksum="761BD55587D4457E" modified="2016-01-20" version="1">MAQGTVKWFSAEKGFGFIEQEGGGDDVFVHYSAIQSNGYKSLEDNQKVEFDVTQGPKGPQAENVRPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDU8</accession>
    <name>A0A0Q8VDU8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Allantoinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_06170</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homotetramer.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895128.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55158">
        <property type="protein sequence ID" value="KRC55158"/>
        <property type="gene ID" value="ASE19_06170"/>
    </dbReference>
    <dbReference type="OrthoDB" id="906155at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004038">
        <property type="term" value="F:allantoinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050897">
        <property type="term" value="F:cobalt ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000256">
        <property type="term" value="P:allantoin catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017593">
        <property type="entry name" value="Allantoinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03178">
        <property type="entry name" value="allantoinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="3">
        <location>
            <begin position="47"/>
            <end position="423"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC55158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="439" mass="46066" checksum="E73BA9680FD5CBB8" modified="2016-01-20" version="1">MIRSVSARRTLVDGELRAATLTVEDGRIAAIGPYDAGAELALPDSSYLLPGVVDTHVHVNEPGRTEWEGFASATLAAALGGVTTLVDMPLNSLPPTTSLEALDLKRSAAAPQCTVDVGFWGGAVPDSLGSLERLWEAGVFGFKCFLSPSGVDEFPALDPEQLRAALAEVASFDGLLIVHAEDAAVLDAAPHRPSRAYADFVLSRPDEAETTAIRRLIDGARETGCRVHVLHLSSARALDLLAGARAEGLPVTVETCPHYLCLAAEQIPDAAPEFKCCPPIRDEGNRAALWDALVDDVIDVVVSDHSPTTPAMKAAGDGELQQAWGGISGLQVGFAAVADEAARRGIGIERVAGWMATGTADLVGLDRKGRIAVGADADLAVHDPTVPMVVDARRLAHRNPLSAYDGRTLAGSVTHTLLRGELVGGTDGARRGALLERTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE86</accession>
    <name>A0A0Q8VE86_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">HTH lacI-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_11290</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895186.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52976">
        <property type="protein sequence ID" value="KRC52976"/>
        <property type="gene ID" value="ASE19_11290"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1796334at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="5">
        <location>
            <begin position="16"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC52976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="345" mass="36827" checksum="1395D8EC40374B35" modified="2016-01-20" version="1">MAVERGQRDNGKRRSPSMADVAALAGVSHQTVSRVLNDSPLVREDTRTRVNAAIRELGYRRNAAARLLVTNRSGRIGMVSAHLALYGPSMIAEAVQEAGREAGYDVAVVGVLDLTEEALQRAVDRLLDQAVEALVVAVAHRDAHHLVRGLSLPIPVVLAQGVSPGEAMAAGIDQVAGARLATDHLLDLGHHAVAHVSGPRDWTEAEQRREGWRQAHEARGLLPGPELPGDWSAASGYDAGQRLAKDRDLSAIFVANDSMALGVLRALHEAARAVPNDVSVVGFDNVPEGGYYWPALTTVAQDFPELGRRAVELAVRALGGEDRPAAELAQPVMLVRGSTGKNRTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEG2</accession>
    <name>A0A0Q8VEG2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11195</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52961">
        <property type="protein sequence ID" value="KRC52961"/>
        <property type="gene ID" value="ASE19_11195"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000801">
        <property type="entry name" value="Esterase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00756">
        <property type="entry name" value="Esterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="271" mass="29257" checksum="AD09D1B1E80FF0D5" modified="2016-01-20" version="1">MELEVLPGKASLYHHLGHDGPDGLVPDVEPGRVVRGAFVSRARGTDVGWALARPPGVDPDERLPVVVALHGRRQDHTSAFRRDRLALDRFMAALTSDGVPPFAVASVDGGETYWHDRASGDRAQTMVVEELLPLLEKQGVSTARIGFVGWSMGGFGALHLAAALGPERIAAVAAMSPALWHRYDDTAPGAYDDAADFEQVTVMGRQERLAGIGVRVDCGMGDPFYATTRDYVEGFPERQQPAGGFELGDHDSGYWRRIAPDVLRFLGGALT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFA7</accession>
    <name>A0A0Q8VFA7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_13055</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895742.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53280">
        <property type="protein sequence ID" value="KRC53280"/>
        <property type="gene ID" value="ASE19_13055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="11"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="100"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="166" mass="18164" checksum="44CD36891F99F6E8" modified="2016-01-20" version="1">MTLGRDDLARLYDEHRLALVRLALLLVDDLPTAEDVVHDAFARALGRVVPPEAAAAYLRTAVVNGARSTLRRRRTARGYVAPRDLDSDPADLAVLAEEHREVLVALRTLPRRQHEVLVLRYYGGLSEAEIAAATGISRGAVKSTAHRALAALERALMTQQTEEVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG47</accession>
    <name>A0A0Q8VG47_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_13775</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897093.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53409">
        <property type="protein sequence ID" value="KRC53409"/>
        <property type="gene ID" value="ASE19_13775"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1108236at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="25"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="57"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="91"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="115"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="149"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="181"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="212"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="235"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="279"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="323"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="352"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="377"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="416"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="456"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="26"/>
            <end position="482"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="489" mass="49866" checksum="421C094DB68D2053" modified="2016-01-20" version="1">MTSTLDPATSVEAPSATGPATYSRLVLPAMAANVFLLSLIQTVVVPALPLIGQQLSVSATTVGWVATATMLTASAVTPLFGRLGDVFGNRLVILVVLALTLVGSVLAAVGDSIGVLLAGRVLQGASFGLFPLAISVLRQELPHERLHHGMSIAATALGFGSGFALVATGVLTNNGGDYHRIFWLTVAASALMLVLSAVALPRRAGRGGRVDYTGAVVLGTGLVALLLPVSQGHEWGWTAPLTLGLFGAAVVVLLAFGVLQSRTEQPLIALSLLSHRPVLATNLASLFVGYGMFSVFLGATYFVQAPDALTGYGFDASILRTSLVYMLPGTLLAIPLGPISGHLVGRYGARPVLLSATLLGIASMSSLALFHDHSAEFIVALVAGNAAIAVAYAAMPALLVRYVAPHDTGIANSVNSIMRTVGGAIGSAIVITILAASSETVATPVGPVSLPTEGAYQLSFALGAGAFVLAALLAALGFRGTSPYRAEVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGI6</accession>
    <name>A0A0Q8VGI6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10105</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895165.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53613">
        <property type="protein sequence ID" value="KRC53613"/>
        <property type="gene ID" value="ASE19_10105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="4"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="243"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="322" mass="33740" checksum="3152B1667573457C" modified="2016-01-20" version="1">MDGPDDVPLLIATSGSTGTPKRVVLSRAAVLASVRASAARLGANGPWVLALPPTYVAGVQVIVRSLVAGHDPVLLERDPSTGSGRGGWPEGAGWFVSLVPTQLRRMLAAPDDLAALRNAHTVLLGGGPIGEELRAQAAEAGVHVVATYGSAETAGGCVYDGLPLDGVAVALGEGGRVRIAGPTLFTRYDGQPDLTREVLVDGWFLTSDAGRIDEDGRLALIGRLDDVIVTGGLNVPGPAVAERLRSHPAIREAEVLGVPDAEWGNRVVAFVVPADAGIVDELRDWVAEEHPRAWAPRQWVVLDEIPLLPNGKPDRQALRALT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGT6</accession>
    <name>A0A0Q8VGT6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Lipoprotein signal peptidase</fullName>
            <ecNumber evidence="6">3.4.23.36</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Prolipoprotein signal peptidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Signal peptidase II</fullName>
            <shortName evidence="6">SPase II</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lspA</name>
        <name evidence="9" type="ORF">ASE19_02315</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">This protein specifically catalyzes the removal of signal peptides from prolipoproteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>Release of signal peptides from bacterial membrane prolipoproteins. Hydrolyzes -Xaa-Yaa-Zaa-|-(S,diacylglyceryl)Cys-, in which Xaa is hydrophobic (preferably Leu), and Yaa (Ala or Ser) and Zaa (Gly or Ala) have small, neutral side chains.</text>
            <dbReference type="EC" id="3.4.23.36"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Protein modification; lipoprotein biosynthesis (signal peptide cleavage).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the peptidase A8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.23.36" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892700.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56682">
        <property type="protein sequence ID" value="KRC56682"/>
        <property type="gene ID" value="ASE19_02315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1575081at2"/>
    <dbReference type="UniPathway" id="UPA00665"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00161">
        <property type="entry name" value="LspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001872">
        <property type="entry name" value="Peptidase_A8"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33695">
        <property type="entry name" value="PTHR33695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01252">
        <property type="entry name" value="Peptidase_A8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00781">
        <property type="entry name" value="LIPOSIGPTASE"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00077">
        <property type="entry name" value="lspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="2 6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="86"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="112"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="153"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="145"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="195" mass="21240" checksum="BB1EA3C72128BA1F" modified="2016-01-20" version="1">MQAARGTPVDDRDDGPDETRGGLLAAPRTWLLFAAVGAIMLVIDQVTKVLAVRHLAGEPDVEVVGELLQLHLTYNPGAAFSLGTRFTVALAVLATAATLVVLWISRRVQSRWWSVALGLMFAGIDGNLMDRLFRDPAPFKGHVVDFLMLPNWPVFNVADMCINVGVAMILVQVLRGIALDGSRVEQHQPDEEETS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHC8</accession>
    <name>A0A0Q8VHC8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cytochrome-c oxidase</fullName>
            <ecNumber evidence="3">7.1.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Cytochrome aa3 subunit 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">ASE19_02800</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <reference evidence="18 19" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cytochrome c oxidase subunit 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.9" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56764">
        <property type="protein sequence ID" value="KRC56764"/>
        <property type="gene ID" value="ASE19_02800"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070469">
        <property type="term" value="C:respirasome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004129">
        <property type="term" value="F:cytochrome-c oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045187">
        <property type="entry name" value="CcO_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002429">
        <property type="entry name" value="CcO_II-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001505">
        <property type="entry name" value="Copper_CuA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014222">
        <property type="entry name" value="Cyt_c_oxidase_su2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036257">
        <property type="entry name" value="Cyt_c_oxidase_su2_TM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22888">
        <property type="entry name" value="PTHR22888"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00116">
        <property type="entry name" value="COX2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81464">
        <property type="entry name" value="SSF81464"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02866">
        <property type="entry name" value="CoxB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00078">
        <property type="entry name" value="COX2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50857">
        <property type="entry name" value="COX2_CUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0186">Copper</keyword>
    <keyword evidence="9" id="KW-0249">Electron transport</keyword>
    <keyword evidence="12 16" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="8" id="KW-1278">Translocase</keyword>
    <keyword evidence="6 16" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 16" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="60"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="105"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="COX2_CUA" evidence="17">
        <location>
            <begin position="135"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="268"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00024688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00031399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS50857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="KRC56764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="32766" checksum="7A4741B2641E521D" modified="2016-01-20" version="1">MGWWHPERPRAQRRFRRAIPLAGFVVLAAALSGCSTDSQWERIGMPEIKSEQGEHILQLWQGAWIAALVTGVITWALIIGVPIWFRRRSDDEVPVQTRYNLPIEIFYTIFPVIMVIAFFAHTVRVQNIALDEVENPDVTVLVVGQKWQWTFNYPDTEAAGGKNVYVNSAGGDDIPTLVIPVGKTVEFDLYSPDVIHDFGVPAFAMRMDVVPGNDNSFQVKPTGTGTFDGKCYELCGAYHSRMLFRVKVVTEAEYEAFLKKLAADPEHVSDEPVKGGVYSENLINHDEEEHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHF2</accession>
    <name>A0A0Q8VHF2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-oxoacyl-ACP reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07235</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895301.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53869">
        <property type="protein sequence ID" value="KRC53869"/>
        <property type="gene ID" value="ASE19_07235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1356861at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="259" mass="26933" checksum="A66BC4BFE97AF913" modified="2016-01-20" version="1">MIDLTGKKAIVTGGSSGIGRAIATTLAKVGAHVVVADLTEEAREGGEPTAAVIVAAGGSAEFVKLDVTASAHVASVFAELDERLGGLDILVNNAGVLREGSVHETDDETWRTQFLVNVDGTFHCTREMVRGLLARKSPGKIVNISSISGFRGNPGFAAYCATKGAIVNFTRQVALDYAGQGINVNAVAPGFVTTHMTALYDQETYDALAAQTPRGRWAIPQDVANAVLFLASSLADHVVGDNLLVDGGWTIGTPVELGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHQ2</accession>
    <name>A0A0Q8VHQ2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ribonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03105</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893079.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57045">
        <property type="protein sequence ID" value="KRC57045"/>
        <property type="gene ID" value="ASE19_03105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007346">
        <property type="entry name" value="Endonuclease-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044925">
        <property type="entry name" value="His-Me_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045939">
        <property type="entry name" value="YhcR_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33607">
        <property type="entry name" value="PTHR33607"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19886">
        <property type="entry name" value="DUF6359"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04231">
        <property type="entry name" value="Endonuclease_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54060">
        <property type="entry name" value="SSF54060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360041" evidence="1">
        <location>
            <begin position="31"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="domain" description="DUF6359" evidence="2">
        <location>
            <begin position="34"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="379" mass="39819" checksum="1A2A73901239C9D1" modified="2016-01-20" version="1">MRRPPLAVLALTLFTSFLLVAPLRPAPASAATPLTVAQAIATQDSSVATVRGYVVGQPTATSTVVTSGFPNDYALALADSPGTTATSQMVYVQVPTAFRSTFGLRTNPSLMGKQVDVTGTLSAYFSHPGLKDGTSFALAGTSGGGGGGTDPSIPPGYYDAATGRTGAALATALHGIIDGNQTLSYTQVWEALKVTDADPANANNVIEFYSGRSIAKSSNGGSVGQWNREHTWPQSHGDFGTTAGPGTDLHHLRPEDVTINSTRGNKDFDNGGSAVTNCTDCFTDADSFEPRDSVKGDLARGLMYMAVRYEGGDGFADLELNNTTNGSTPYLGKISVLLAWSAADPVSTAERTRNNLIYNSYQGNRNPFVDHPEYAEAIW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHT6</accession>
    <name>A0A0Q8VHT6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_03820</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892957.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56940">
        <property type="protein sequence ID" value="KRC56940"/>
        <property type="gene ID" value="ASE19_03820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1058434at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030296">
        <property type="entry name" value="MlaF/Mkl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43023:SF6">
        <property type="entry name" value="PTHR43023:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="22"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="54"/>
            <end position="61"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC56940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="268" mass="29497" checksum="8702899FC1E6E5E7" modified="2016-01-20" version="1">MTTFAPTHAAPVPAPAGTTHSMEVRDVHKSFGPYDILTGMNLNFVDDAITTILGPSGTGKSVLIKHLVGLLEPDQGEVLIFGQDIWKISKQERYELRKRFGVLFQDGALFGSMNIFDNVCFPLRKHTDMAEKDIRDLVMDRLQEVGLEGAAAKLPSEVSGGMRKRAGFARALILDPDIVMFDEPDSGLDPVRTSLLNDVILEMHERHKGTYMVVTHDMATARKVSDYIGVVWKGKCIHYSEAEAAFNADNDFVRQFLAGSSAGPLGMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI45</accession>
    <name>A0A0Q8VI45_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14590</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896949.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53554">
        <property type="protein sequence ID" value="KRC53554"/>
        <property type="gene ID" value="ASE19_14590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1845862at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="145" mass="15678" checksum="C0B5F94EA798B33F" modified="2016-01-20" version="1">MTDDGTAAVRDVVVAFFATFVSGPECIERAERLRGLCLPGAIIVSGSTPPVVEDIESFLAPRLALLTGGGLSEFREWPEEGRIDVHGDLAHWFGPYAKQGRRDGVAFEGRGAKSIQLVRTPAGWRISAVAWSDDPADRARGTLER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI90</accession>
    <name>A0A0Q8VI90_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CHK domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08605</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895541.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54109">
        <property type="protein sequence ID" value="KRC54109"/>
        <property type="gene ID" value="ASE19_08605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1457558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015897">
        <property type="entry name" value="CHK_kinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00587">
        <property type="entry name" value="CHK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CHK" evidence="1">
        <location>
            <begin position="128"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="366" mass="39356" checksum="0A55F162C6FD8430" modified="2016-01-20" version="1">MSETITTTLRPEEQLTPERVQSMLRISPHIEGAAGIEVASVSAEPVGTGQMATSVRLTLDYASAPAGAPRTVVAKVPSTDEASLAMAAGTNAYGREVAFYRELAPQIGAAVPRCHFGEVAGSGTDFVLLLEDLAPARSVDQREGGSVDEVAAVLRHTADLHGRFWGRADAGWLPVQHVWGALAGQIPAITEAWLDRFGRYVDADLHDVIRELGGVAPIWLSTLERPRTVWHGDLRLDNVLFDARRGTSDAVIVDWQSAASGPGTTDVSYLIGTSLAPTDRRENEKSLVADYHQRLTSHDAVGDYSLDECWLDYRSQALYALVLTLPVSMGVQPTERGDAMFGAMATRAAGHVRDLDTVGALRGMQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIL4</accession>
    <name>A0A0Q8VIL4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06335</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55161">
        <property type="protein sequence ID" value="KRC55161"/>
        <property type="gene ID" value="ASE19_06335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016780">
        <property type="term" value="F:phosphotransferase activity, for other substituted phosphate groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00379">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="57"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="89"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="186"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="210"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="264"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="300"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="686" mass="73763" checksum="CEDAB229F99D23FB" modified="2016-01-20" version="1">MTAVLVGGSVVALALDAVDGFVARRTGTVSAFGARFDMETDAFLIAVLSVHVAPRLGWWVLAIGAMRYAYVLAARALPWLRRPTPPRYWAKVVAAVQGVVLTVAASTLLPPSTAQLALALALLLLVESFGHDVVWQWRHRYDAEDAPLPAGTTAPTPRQLTLAAAAVLWLALAPPRVADGVSPADFARIPLEGIALAALAVVLPARGRRVAAVAVGLAVTVLAVLRGLGLGFDLYLGRSFHVLGDWSYLPKGFEVVRDTEGLPVAVLALGGAVAVVVVLAVALTWSAARVAHAAAGQRRTTWRALLAIGTVWVLCAVAGGPVHGVAAAGSAGLVVDTVDQVRADRHDTGVFARELRADPFADTPGDQLLRGLRGKDVLLVWFESYGRVALEDSWFAPSVVQVVEQGNRDLAAAGYRSRSAFLTSPTFGAGSWLAHGTFQSGAWANGERRYGQLLASDRLSLTRAFDVAGWRTVLDVPANTRDWPEGAAYYRFDQLYDSRNVGYRGPRFGYASMPDQFTLDHLRRTELTPGARPRVFAEVDLVSSHHPWAPVPEPVPWTAVGDGSGFDGMPDRGAEAVDGHRDPEAAQRNYAASVRYTWRTLVSFLTTYPDRDRVVIVVGDHQPHSFVTGRHAGHDVPISVIAQDPDVIRRIEDWGWQPGVLPGPDAPVTRMDAMRDRILTAFGPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKL4</accession>
    <name>A0A0Q8VKL4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04750</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894296.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54785">
        <property type="protein sequence ID" value="KRC54785"/>
        <property type="gene ID" value="ASE19_04750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047691at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007061">
        <property type="entry name" value="DUF664"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04978">
        <property type="entry name" value="DUF664"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="161" mass="18004" checksum="0AB703A4EBEB89A9" modified="2016-01-20" version="1">MTGELANYRDYLSHYRETLERKCAGLTPEQLASRSVPPSSMSLLGLVRHLARVEHFWFQRALVEVDGDRLHDDDGDAGFAQVEPTEEAVSLAWASWREQVALADQWLDSVTDEGMGQVVTFRSGTDTASVRDILVHMVEEYARHCGHADLLRECIDGATGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN55</accession>
    <name>A0A0Q8VN55_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_23030</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892550.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58936">
        <property type="protein sequence ID" value="KRC58936"/>
        <property type="gene ID" value="ASE19_23030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1345431at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="15"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="51"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="81"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="106"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="170"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="225"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="256"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="290"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="314"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="356"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="388"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="15"/>
            <end position="414"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC58936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="441" mass="46467" checksum="0A71CFBAE1EFF9C5" modified="2016-01-20" version="1">MSGEPGSTPGRRYTVWAVGLGVYALAVFHRSSLAVAGLAATERFDISASQLASFTMLQLLVYASMQIPVGLMVDRFGSRTVLTVAVTVVSTGQAAFAFADDYPTALLARALVGVGDAMTFICVLRLVTSWFPRGQVPLVSQLTGNLGQLGALAAAAPMTWALGELGWTRSYLAGAIAGLVMLVVLRLVLHDSPTQAHLRGVPMTARALARSLAASWEQPGTRLGLWIHFSTPFSPALLGLLWGFPFLVSAEHRSEATAGALISVLFLTNLAYGPLMGWLVGRHPWHRSTLGLTIVAAMATVWAAVLLWPGDAPLWLLVVLIVVVGAGGPGSMVGFDVARTSNPDHRSASASGIINVGGFTSSLLVIVGVGIVLDALSGGDGSYTPEAFRWAMAVQYVLWALGSIQILRYRRRIRSLTTREQVAGGNTMVEVGPDPVSPGGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNA9</accession>
    <name>A0A0Q8VNA9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23040</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893038.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58997">
        <property type="protein sequence ID" value="KRC58997"/>
        <property type="gene ID" value="ASE19_23040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="23"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="118"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="173"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="213"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="240" mass="24927" checksum="6DDFAE3AC51999FE" modified="2016-01-20" version="1">MVVEVTKRIFTRPFQFREFLEQAWFVTSVTLMPTIMVSIPFGAVISLQVGNLTGQLGAQSFAGATAVLATVREAAPMAAAMIIAGAAGSAICSDLGARKIREEIDAMEVLGIDPLERLVAPRVVATMFVALMINGIVIGTGIGGGYFFTVIVQGGSAGAFLSSFTALASLPDLYIAMVKALIFGWLAAIIGAYKGLNAGGGPSGVGRAVNESVIIAFMALFFLNAVITAIYFQVAPPVGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNB0</accession>
    <name>A0A0Q8VNB0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 9">Arginine repressor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">argR</name>
        <name evidence="12" type="ORF">ASE19_23320</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Regulates arginine biosynthesis genes.</text>
    </comment>
    <comment type="pathway">
        <text evidence="9">Amino-acid biosynthesis; L-arginine biosynthesis [regulation].</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the ArgR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892503.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58984">
        <property type="protein sequence ID" value="KRC58984"/>
        <property type="gene ID" value="ASE19_23320"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1640037at2"/>
    <dbReference type="UniPathway" id="UPA00068"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034618">
        <property type="term" value="F:arginine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051259">
        <property type="term" value="P:protein complex oligomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00173">
        <property type="entry name" value="Arg_repressor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001669">
        <property type="entry name" value="Arg_repress"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020899">
        <property type="entry name" value="Arg_repress_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036251">
        <property type="entry name" value="Arg_repress_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020900">
        <property type="entry name" value="Arg_repress_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34471">
        <property type="entry name" value="PTHR34471"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01316">
        <property type="entry name" value="Arg_repressor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02863">
        <property type="entry name" value="Arg_repressor_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01467">
        <property type="entry name" value="ARGREPRESSOR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55252">
        <property type="entry name" value="SSF55252"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01529">
        <property type="entry name" value="argR_whole"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="5 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0678">Repressor</keyword>
    <keyword evidence="8 9" id="KW-0804">Transcription</keyword>
    <keyword evidence="6 9" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Arg_repressor" evidence="10">
        <location>
            <begin position="10"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="Arg_repressor_C" evidence="11">
        <location>
            <begin position="98"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC58984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="171" mass="17980" checksum="F4F388699C1E38D4" modified="2016-01-20" version="1">MSEHALTPLTKNARQALIVELLESREVRSQPELADLLGHRGVHVTQATLSRDLVELDAVKVRSAHGNLVYAVPAEGGDRTPVAGDSPAAQHRLARLCSELLVSAEASANLVVLRTPPGAAQFLASAVDKVEIPDVLGTIAGDDTVLVIGRDPAGGEALALRFTSLAERNES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP68</accession>
    <name>A0A0Q8VP68_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH marR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_24105</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894051.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57417">
        <property type="protein sequence ID" value="KRC57417"/>
        <property type="gene ID" value="ASE19_24105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1744037at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="4"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="15843" checksum="0412139823C23AF6" modified="2016-01-20" version="1">MAAWLPLIRIVHALPQALDKLLREEVGIPHNYYGMLATLSAQPDRTLTMGDLARLTASSPSRLSHAIAALEQRGWVERQQCAEDKRRQFVTLTEGGAAMLEEVAPSHVAHVRELIFDRLSPEQVRQLAEIGRALVDDAELGEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQI9</accession>
    <name>A0A0Q8VQI9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02180</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892675.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56657">
        <property type="protein sequence ID" value="KRC56657"/>
        <property type="gene ID" value="ASE19_02180"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2092752at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="66" mass="6781" checksum="7B4E97FEECC337C3" modified="2016-01-20" version="1">MADNHGNTPAAWTAVLVSLVGFVVGAAGMSLSPINWPVFWIGAVIAVAAGPLFLILVKMGLHESGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQN8</accession>
    <name>A0A0Q8VQN8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_00455</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896798.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59542">
        <property type="protein sequence ID" value="KRC59542"/>
        <property type="gene ID" value="ASE19_00455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1112046at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="4"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="327"/>
            <end position="565"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="311"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="367"/>
            <end position="374"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC59542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="566" mass="62083" checksum="51E38536E31AA139" modified="2016-01-20" version="1">MGHVEVAGVRYELPDGRVLLDDVSFRVGEGAKVALVGANGAGKTTLFRIITGELTPHAGAVVRSGGLGVMSQMVDRGLGEEPTVADLLLALAPERVRRAAAEVDRWELALMDTDDEATQIAYATALSEYADAGGYDVEVVWDVCTVKALAVPYDRAKYRELATLSGGEQKRLVLEYLLAGPEEVLLLDEPDNFLDVPGKVWLEQRIAASEKTILFISHDRELLANCATHVVTVELGAGGGGNSAWTHAGGFTSYHEARKDRFARFAELRRRWDEEHAKLKALVLRLKIKAEYNDGMSSQYRAAQTRLRKFEEAGPPTEQPREQQVTMRLSGARTGKRAVVCEDLELTGLMKAFDLEVWYGDRLAVLGSNGSGKSHFLRLLAAGGSDPDVEHRPVSDAEIAPVRHSGRARLGARVRPGWFVQTHEHPELVGRTLLEILHRGDGDPNGRKGMGREQAARVLDRYELAASSEQRFESLSGGQQARFQILLLELSGATLLLLDEPTDNLDVQSAEALEEGLEAFDGTVVAVTHDRWFARGFDRFCVFGSDGSVYESGEPVWDEGRVARSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQW0</accession>
    <name>A0A0Q8VQW0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02725</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892771.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56752">
        <property type="protein sequence ID" value="KRC56752"/>
        <property type="gene ID" value="ASE19_02725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1985371at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006054">
        <property type="entry name" value="DnaQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013520">
        <property type="entry name" value="Exonuclease_RNaseT/DNA_pol3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000305">
        <property type="entry name" value="GIY-YIG_endonuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035901">
        <property type="entry name" value="GIY-YIG_endonuc_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01541">
        <property type="entry name" value="GIY-YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00929">
        <property type="entry name" value="RNase_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00479">
        <property type="entry name" value="EXOIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00465">
        <property type="entry name" value="GIYc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82771">
        <property type="entry name" value="SSF82771"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00573">
        <property type="entry name" value="dnaq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50164">
        <property type="entry name" value="GIY_YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GIY-YIG" evidence="1">
        <location>
            <begin position="229"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="569" mass="62955" checksum="71AB446738001151" modified="2016-01-20" version="1">MDHAAALDPRWEDQRSFDELGRPLRDVTFCVVDLETTGGSVGDGDMITEIGAVKVRGGEVLGEFQTLVNPHTSIPAFIAVLTGITNRMVADAPPIRAALPAFLEFAAGSVLVAHNARFDVGFLRHFAREQDLAWPDFEVLDTVKLARHVVSRDEAPNHKLSSLARVFRASTTPNHRALEDARATVDVLHGLMERLGGLGVHTLEELQGYSSKVAAASRRKRHLADELPHAPGVYLFRDERERVLYVGTSRDLRRRVRSYFTASEKRTRIGQMVQLATSVTGIECATPLEAEVRELRLIAEHKPPYNRRSRHPEKVTWLKLTREPWPRLSLVKRVLDDDADYVGPFSSRSSAEGSLEALHEVFPIRQCNERFGRRPSRSACALAEMHRCLAPCDGSVDEQSYGAVVRQLQDTLLRRPDDVVDLVHARMSALADQERFEEAAHQRDRLADFIRGAARTQRLAALTGCPEVIAVRREDDGRWAVHVVRHGRLAAAGTIPPGADAVAWVEALRLTAETVVPALGPTPAATAEETERILRWLEAPGVRLVDVVGEWTCPVQGAARHVPVLAAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR73</accession>
    <name>A0A0Q8VR73_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">FtsX domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_00910</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896726.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59615">
        <property type="protein sequence ID" value="KRC59615"/>
        <property type="gene ID" value="ASE19_00910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="856767at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010916">
        <property type="entry name" value="TonB_box_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00430">
        <property type="entry name" value="TONB_DEPENDENT_REC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360328" description="FtsX domain-containing protein" evidence="7">
        <location>
            <begin position="46"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="55"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="109"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="155"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="197"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="239"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="284"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="325"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="378"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="414"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="8">
        <location>
            <begin position="86"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="447" mass="45490" checksum="E1595EA499BEE314" modified="2016-01-20" version="1">MSTTTSLAWRSLRHRPLAATATALAVLLGTTLIGSFATLTESSFAASGTDADTLVVLGAVVGGWGTLIVLFSVASTVGITTTHRASEIGLLRTIGATPRQVRRLVVRETAVVAGLAAVLGALVASVSGHALFALIRSGGLVTDHTRYDAGPASVGAAALLVLLASGVATSLAARRATRGPAGVLVREASAEQGRMRWWRVAAAVVLIGYGIAMAVITVAVTAHDDDPYAAMSTSGSSSILVGVGLAVLAPVLLRWLATPAGLLVGRAGASGHLASYNTARRAHLLAGVLAPVVVLTSAAVGTLLLVDIDTRTLPAGTPDSDTINLLNNVVVGMLSLFAAIMVVNAFVATVAHRREELHRLHLLGATPRQVERSVVAEAGIVAAIGVLLGTMAALTTVVPFAIARHEGAVPDGGLWMVPTVVAAVVALTLAAARTSVRTQRRAQAVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRD8</accession>
    <name>A0A0Q8VRD8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF58 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02420</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893060.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57025">
        <property type="protein sequence ID" value="KRC57025"/>
        <property type="gene ID" value="ASE19_02420"/>
    </dbReference>
    <dbReference type="OrthoDB" id="848990at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002881">
        <property type="entry name" value="DUF58"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01882">
        <property type="entry name" value="DUF58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360298" description="DUF58 domain-containing protein" evidence="1">
        <location>
            <begin position="17"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="domain" description="DUF58" evidence="2">
        <location>
            <begin position="200"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="408" mass="43452" checksum="A479013CB6CD6B3E" modified="2016-01-20" version="1">MRSALSSLTLRGRAFAAAGVTAIACAVVFGQAALTRVGVLVLALPLIAALVVARRRHDPVVSRTVWPRLLRAGESARIDLSISSERRRADGPLLVEDTLPYALGSRPRFVLQGLGQHWERTVTYPVRSDIRGRFAVGPLVVRITDPFGLVERRRQIGGTAELVVTPRVLPLPAIPLSGGWQGAGEHRPQAFASGSAEDVSVREYRRGDDLRRVHWRSSARTGELMVRLEEQPWEAHATVVIDNRTHAHRGQGPASSFESAVVAAASVIVHLEKHGYAVQLATANGAEAEGAEQSLRKLAVLGLTARPQLDTAWSGDQARGGVVVAVLGAHIAGDTTSLQRIRHDAGAALAVVLDVEQWSATRTSAGPAAAATPLLAIGWRGVGIGPRDRLDGAWRDLGRAPSRGGVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRK4</accession>
    <name>A0A0Q8VRK4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptide chain release factor 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_02930</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the prokaryotic/mitochondrial release factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892806.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57040">
        <property type="protein sequence ID" value="KRC57040"/>
        <property type="gene ID" value="ASE19_02930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047548at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003747">
        <property type="term" value="F:translation release factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000352">
        <property type="entry name" value="Pep_chain_release_fac_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045853">
        <property type="entry name" value="Pep_chain_release_fac_I_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00472">
        <property type="entry name" value="RF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75620">
        <property type="entry name" value="SSF75620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RF_PROK_I" evidence="3">
        <location>
            <begin position="16"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="98"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="112"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC57040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="140" mass="15349" checksum="41BDB66099D76939" modified="2016-01-20" version="1">MDVTVPAGPGLPGGLVIPDTELVERFSRSPGPGGQSVNTTDSRVELAWDPAASGVLDDHQRSRLVARTDGPLVVVAHEHRSQHRNRAAARERLAARVRELLAPPPPPRRATKPTRGSKERRLDAKRQRGQTKQLRGRVQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRL6</accession>
    <name>A0A0Q8VRL6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00820</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896890.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59814">
        <property type="protein sequence ID" value="KRC59814"/>
        <property type="gene ID" value="ASE19_00820"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1086845at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009218">
        <property type="entry name" value="HD_phosphohydro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21174">
        <property type="entry name" value="PTHR21174"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF035170">
        <property type="entry name" value="HD_phosphohydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="19938" checksum="1CA2A51DFC7DFF69" modified="2016-01-20" version="1">MAAYAEPTRGHHGVGHLRDVLARLDELAAAGTAYDRVPVQLAAWFHDAVYDGERDAEERSASWAEEALAPHVDDVTLAEVVRLVRLTEQHRPEPGDANGCALTDADLSILAAPAGRYEEYVAAVRKEYAHLPDDVFSAGRADVLRQLAEKPQLFHTAHGIATWEAPARANLARELESLAASVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW16</accession>
    <name>A0A0Q8VW16_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_22970</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892561.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58925">
        <property type="protein sequence ID" value="KRC58925"/>
        <property type="gene ID" value="ASE19_22970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="36"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="118"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC58925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="338" mass="36036" checksum="974941E5EC9FB9E1" modified="2016-01-20" version="1">MTGLRTIAIKFAAFAVVSGLLMILLVNTMNNGVSGDTREFTAQFTDVSGLRKGDDVKAAGVRVGQVTGIKATDEGAQITIELVDDQALLDNTKLVMRYQNLLGQRYIGLVQPAQRGKELSGGADVPVAQTDPGFDLTELLNGFRPLFKVLQPGDVNTLASSLIKVLQGEGGTIEQLLAQTGELSNFLADRDGVIGEVMTNLKPVLDNLAGQGDELTNTVQELRALMTGLAKDRKSIGASIDGVSRLVGATSSLLREVKVPLIKASDRLVTVADMFYRSRNHLKDAVPAFTTVFESLGRATSYENALNVYVCSLSIAIGANSKGINPAGNNGPWRQVCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VW18</accession>
    <name>A0A0Q8VW18_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01670</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896586.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59753">
        <property type="protein sequence ID" value="KRC59753"/>
        <property type="gene ID" value="ASE19_01670"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028202">
        <property type="entry name" value="Reductase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14759">
        <property type="entry name" value="Reductase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="6"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="domain" description="Reductase_C" evidence="2">
        <location>
            <begin position="330"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="395" mass="42187" checksum="7990338BC6879CBE" modified="2016-01-20" version="1">MSELQDVVVVGGGLAGFRFAQSLRDAGYDGRVTIVSDEEHLPYDRPPLSKQLLAGTYTEEQCALPGDAPDVSWVLGRRAERLDRERRVVVLDDGTEVGYDGLLIATGRRARPWPGEMPSSGVHTLRDLADTAAFRSSIGPGAKVVIVGAGFIGCEVAATLRKEGVDVTVVDVSEHPMPVMGPEVGARAARLHEAQGVRFRLGRGVAGFEGEDRVTGVRLEDGELLEASVVLVAVGSVPNSEWFADAGLSMDRDVVVCDATCTVLDADGQPVAGIVAAGDIAAWPHHHGEGAVCIEHWSNARDMADLAARNLLLPVGERAEMAAMASVPTFWSDQYNVKIKSAGFLRAADSWTIVEEDVEKPSLLAEGRRDGELVGAIAFNMNRSIIGYQRQLVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWW0</accession>
    <name>A0A0Q8VWW0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22800</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892588.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58896">
        <property type="protein sequence ID" value="KRC58896"/>
        <property type="gene ID" value="ASE19_22800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1899949at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016566">
        <property type="entry name" value="UCP010219"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11361">
        <property type="entry name" value="DUF3159"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="251" mass="26853" checksum="63178D14981EB9D4" modified="2016-01-20" version="1">MSGTHEHGDAEEHTLSASAGQKLGVDTVEALVRHQLAAALGGKRGMVEAAVPGLVFTAVWLPTDNLRWALIASLGVAGIALVARLLERSSVQYVFNAIFGIGIGWVFVQWADSSGATEDEKKLAFFLPGILISLAYTVVLSASCLVRWPALGFMLGAVAEDPLGWHDNPQIVKLCSRLTWVMLLPGAIGVLLQGPIWLLGDRGTIGVSTAVWLMLVLRTGLGWALRIGSWSVMIWLLARNATPLEPQPETA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYC8</accession>
    <name>A0A0Q8VYC8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Thioesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01165</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896676.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59665">
        <property type="protein sequence ID" value="KRC59665"/>
        <property type="gene ID" value="ASE19_01165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1814691at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027961">
        <property type="entry name" value="DUF4442"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14539">
        <property type="entry name" value="DUF4442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="159" mass="17337" checksum="D34741D7994F7D7A" modified="2016-01-20" version="1">MTQVHNLWKTTTGLPVVGSTIGKRVFSIAFAQKAPYFATIHPRVAELRPNYCEVVIPKRRSVQNHIGTVHAIAMCNGLEMAMGGLAESTIPSEKRWIPKGMSISYTAKATGDVTCIAETDQVQWDTAEGDLPVRVRGQLADGTVVIDGTITLWVTSKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYM9</accession>
    <name>A0A0Q8VYM9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">30S ribosomal protein S7</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpsG</name>
        <name evidence="10" type="ORF">ASE19_00700</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 30S ribosomal subunit. Contacts proteins S9 and S11.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uS7 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_028654596.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59584">
        <property type="protein sequence ID" value="KRC59584"/>
        <property type="gene ID" value="ASE19_00700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1540940at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.455.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00480_B">
        <property type="entry name" value="Ribosomal_S7_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000235">
        <property type="entry name" value="Ribosomal_S5/S7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005717">
        <property type="entry name" value="Ribosomal_S7_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020606">
        <property type="entry name" value="Ribosomal_S7_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023798">
        <property type="entry name" value="Ribosomal_S7_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036823">
        <property type="entry name" value="Ribosomal_S7_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11205">
        <property type="entry name" value="PTHR11205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00177">
        <property type="entry name" value="Ribosomal_S7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002122">
        <property type="entry name" value="RPS7p_RPS7a_RPS5e_RPS7o"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47973">
        <property type="entry name" value="SSF47973"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01029">
        <property type="entry name" value="rpsG_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00052">
        <property type="entry name" value="RIBOSOMAL_S7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6 8" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="6" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_S7" evidence="9">
        <location>
            <begin position="1"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003620"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC59584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="156" mass="17392" checksum="C7F260E9715A0BA4" modified="2016-01-20" version="1">MPRKGPAPKRPIDVDPVYGSQLVSQLVSKVLQDGKKQVAQRIVYAALEGTREKTGTDPVITLKRALDNVRPALEVKSRRVGGATYQVPVEVKGNRGTTLSLRWLVGYAQERREKTMAERLQNEILDAANGLGAAVKKREDTHKMAESNKAFAHYRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W1C7</accession>
    <name>A0A0Q8W1C7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">Glutamine--fructose-6-phosphate aminotransferase [isomerizing]</fullName>
            <ecNumber evidence="2 8">2.6.1.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">D-fructose-6-phosphate amidotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">GFAT</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Glucosamine-6-phosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Hexosephosphate aminotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">L-glutamine--D-fructose-6-phosphate amidotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">glmS</name>
        <name evidence="11" type="ORF">ASE19_00365</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>D-fructose 6-phosphate + L-glutamine = D-glucosamine 6-phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:13237"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58725"/>
            <dbReference type="ChEBI" id="CHEBI:61527"/>
            <dbReference type="EC" id="2.6.1.16"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.16" evidence="2 8"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896813.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59527">
        <property type="protein sequence ID" value="KRC59527"/>
        <property type="gene ID" value="ASE19_00365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="43416at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004360">
        <property type="term" value="F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901137">
        <property type="term" value="P:carbohydrate derivative biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05008">
        <property type="entry name" value="SIS_GlmS_GlmD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05009">
        <property type="entry name" value="SIS_GlmS_GlmD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00164">
        <property type="entry name" value="GlmS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035466">
        <property type="entry name" value="GlmS/AgaS_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035490">
        <property type="entry name" value="GlmS/FrlB_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005855">
        <property type="entry name" value="GlmS_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10937:SF0">
        <property type="entry name" value="PTHR10937:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01135">
        <property type="entry name" value="glmS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5 8 11" id="KW-0808">Transferase</keyword>
    <feature type="initiator methionine" description="Removed" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="9">
        <location>
            <begin position="2"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="10">
        <location>
            <begin position="288"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="10">
        <location>
            <begin position="456"/>
            <end position="604"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for GATase activity" evidence="8">
        <location>
            <position position="2"/>
        </location>
    </feature>
    <feature type="active site" description="For Fru-6P isomerization activity" evidence="8">
        <location>
            <position position="609"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC59527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="614" mass="66792" checksum="C65763F701E7445B" modified="2016-01-20" version="1">MCGIVGYVGHRSATDTVIDGLRRLEYRGYDSAGVAVVSDGAIALEKRAGKLANLEKVLDETPLALAHIGIGHTRWATHGPPNDVNAHPHTGGVRRVALVHNGIIENFMELRERVEADGHELLSDTDTEIVAHLVELQVQSGVDLTTAMQRVCQQLDGAFTLVAIDAEDPDTVVAARCNSPLVVGLGEGENFLGSDVAAFIEFTREALELGQDQIVVMTRDEVRVTDFHGRPVEARQFHVDWDLSAAEKDGHDWFMRKEIFEQPRAVADSLIGRRTANGQLQLDEMRLADEELRDVDKIIIIACGTSFYAGMVAKYAIEHWTRTPVEVELASEFRYRDPIIDATTLIVAISQSGETADTLQAIRHARSQRAKVLAICNTNGSSIPRESDAVIYTHAGPEIGVASTKGFLTQLVACYLLALYIAQVKGTRFGDEIDEIMEQLEAMPGHIETVLEGADAVYELARSHAGTRSVLFLGRHAGYPVALEGALKLKELAYLHAEGFAAGELKHGPIALIEEGLPVLCVVPPKGRDQLHGKMLSGIQEVRARGARTICLAEAGDTSIEPYADDLIRLPKVPVLLQPLVAILPLQLFACELATALGHDVDQPRNLAKSVTVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMB4</accession>
    <name>A0A0Q8UMB4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Metallophos domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19915</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895914.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46138">
        <property type="protein sequence ID" value="KRC46138"/>
        <property type="gene ID" value="ASE19_19915"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022506">
        <property type="entry name" value="Metallophosphoesterase_PPA1498"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03767">
        <property type="entry name" value="P_acnes_RR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos" evidence="1">
        <location>
            <begin position="250"/>
            <end position="467"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="570" mass="60626" checksum="6B7F1AE63AA22798" modified="2016-01-20" version="1">MEISRRDLIRKTIAAGGLAAAATTMPGILRSSAHADPAPVSLPPTYAPGTPGFGGYRPVIAVAAEDHTVRAGLGVPANAGRARQGLLAFVQLSDVHVVDAQSPMRLEWTDRLDDPSPLPATGLFSSSYRPHEMLTGQVADSMVRAINQIAAGPVTGKPLALAIQTGDNSDNSQLNEVRWNIGVLNGGQVRVDSGNLTRWEGVADSTAATYDTAYWHPHGNPAGKPVDRPRAEYGFPVVPGLLDAARRPFTAEGLNMPWYSVFGNHDGLVQGNFPTSTLQLNLLALGALKIVSPPLGLNPAQLLDDLMTDPADLLTNLLGGALNTVVRAVTPDLNRRLLTRKQVVEQHFTMGGLPFGHGFTATNRQQGTAYYSFDRGAFRFIVMDTVNPNGYADGSLDKTQFAWLTALLEQSADKVVMVFSHHTSDTMGNPLVATGGSIEPRVTGGTVLDALLATPNVVAWINGHTHRNKITPRPRPAGGGLWEITTASHIDWPQQARIIEVADNHDGTLSIFTTMVDHAGPASSGAGTANAQELAGLARELSANDWHHHLDGSGAPEDRNVELLVTNPLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMF1</accession>
    <name>A0A0Q8UMF1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19790</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895892.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46116">
        <property type="protein sequence ID" value="KRC46116"/>
        <property type="gene ID" value="ASE19_19790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="27668" checksum="991562A8BE1287A8" modified="2016-01-20" version="1">MTSEFVRLEVADGVGTIRLDRAKAMNAISLQVQDELTLTAAEATDRSDVRAVVVWGGEKVFAAGNDVKQMADMSYTDMVDRVEKLQNAVNSIARIPKPVVAAVNGYALGGGCELAMAADVRFVADNAVLGQPEILLGIIPGAGGTQRLPRLVGPAKAKDLLFTGRFVKAEEALAIGLADRVVPAADVYAEAVAWASKFATAAPYALRAIKESVDRGLEADLETGLQIERQHFSAVFATQDSRTGMQSFIENGPGKATFEGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UML8</accession>
    <name>A0A0Q8UML8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH marR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896022.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46251">
        <property type="protein sequence ID" value="KRC46251"/>
        <property type="gene ID" value="ASE19_20620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1744037at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="8"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="146" mass="15445" checksum="14E152230B72B834" modified="2016-01-20" version="1">MDVSTPDAATLSSDLTVLAARLVRLVRREHAPSAGVRVLSILDELGPQSVTTLAQADRCSQPTMTGQVRQLAEQGWVAKQPHPADARSSLVALTDGGRAELERVRQLSAALVSGRLARRTDLTTDDLATAVAVLQAVLEPTTEGNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMQ6</accession>
    <name>A0A0Q8UMQ6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20795</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896053.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46282">
        <property type="protein sequence ID" value="KRC46282"/>
        <property type="gene ID" value="ASE19_20795"/>
    </dbReference>
    <dbReference type="OrthoDB" id="865276at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045699">
        <property type="entry name" value="GlfT2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040492">
        <property type="entry name" value="GlfT2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19320">
        <property type="entry name" value="GlfT2_domain3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17994">
        <property type="entry name" value="Glft2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glft2_N" evidence="1">
        <location>
            <begin position="68"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="domain" description="GlfT2_domain3" evidence="2">
        <location>
            <begin position="461"/>
            <end position="655"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="664" mass="75038" checksum="9FE8B149872F0BE9" modified="2016-01-20" version="1">MSDETVTRLLQRQILPLDRDSEVFPLYVDLAEPDLDEDKYVVGGSRAAKDLNNTKVRQATVGGEKLRPEQVLDRTRLRVDAGQTISLASYFNAFPASYWRRWTIVDQVRLTVTVEGAGATIIVNKSLANGNSQRVESAESTETGTQTFVFDLSLKPFIDGGWYWYDVLAGEQPVVVSAEWTAEVPADRAAHGSVDVAITTMNRPEFCSELLLQFADEDLAPYLDTVFVMEQGTQLVEDAELFPDVEKALGDKLRIVKQGNLGGSGGYARGQLESLRKGTATYALMMDDDVVCEPEGIIRQVTFGDLARRPTIVGGHMFSLYARSRLHSFGEIVHPWRFWWKTPEDGYMQWDFGTRNIRSARWLHKRVDVDFNGWFSCLIPREVIDRIGLSLPLFIKWDDAEYGIRARAHGFPTVTFPGAAVWHVPWTDKNDALDWQSYFHLRNRLVAALLHSTFPRGGRVIREVFNNQLAHLVAMQYSTAELRLQAMEDVLRGPQALHEMLPTRLAEVNATRKEFSDAQLVADVDTLPPPRMEKPLKKDLTEVPTRKSQLISAGLAPLRQLRPPRALSRTNPEATIPAVDAKWYRLAGFDSAIVSMNDGTAAALYRRDPETYKALLKRTLELHARFTRQWPQLAQQYRDALDEITSPEAWERTFAPWTEGAADD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMT7</accession>
    <name>A0A0Q8UMT7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20990</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896089.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46318">
        <property type="protein sequence ID" value="KRC46318"/>
        <property type="gene ID" value="ASE19_20990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="602555at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005182">
        <property type="entry name" value="DUF304"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014529">
        <property type="entry name" value="UCP026631"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03703">
        <property type="entry name" value="bPH_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF026631">
        <property type="entry name" value="UCP026631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="215"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="352"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="377"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="domain" description="bPH_2" evidence="2">
        <location>
            <begin position="66"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="bPH_2" evidence="2">
        <location>
            <begin position="408"/>
            <end position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="487" mass="50430" checksum="BED1553E16D36729" modified="2016-01-20" version="1">MTAGPVPEAPWQRLDPRMLLVHPITELVKFLPVLIGLVVAGGASGTGPWALLGVGVPVGLGVVRYVTTTYRVTTARVELRRGLLQRHNLSTPLDRVRTVDLTASPIHRVLGLATLVIGTGSVVTDDDDRLLLDALPREQAAALRTHLLSVLHPVGEAGSDAPAVLAPEHVVARFSPQWLWYAPFSGAVLVAAGAVLGAGAPLLESVDLRVSEDDLAIFSPAVILGLGLAVLLVTVALFVVGYLVVNGGFVLARQGAAWHVRRGLLTHRETSIDVARLAGATISEPAALRLARGRRVNAIVTGLRGSQESSTVLLPPAPQATAIATTTAVLGSAEPVTGPLRSHGRKAATRRWTRALLGCSPVVVAVVVAVAAGAPPALLGLAVAAVAVALALAADRVRALGHGHLAGHVVARSGSVLRRREALADAHVIGWNLRATWFQRRAGLATLAATTAGGDGQVAVLDVPEPEAVALALAATPGLLDDFLEPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMU2</accession>
    <name>A0A0Q8UMU2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase</fullName>
            <ecNumber evidence="2">4.2.1.17</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.17" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896064.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46293">
        <property type="protein sequence ID" value="KRC46293"/>
        <property type="gene ID" value="ASE19_20855"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275789at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004300">
        <property type="term" value="F:enoyl-CoA hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="287" mass="30804" checksum="10F5D0D97BE3AE78" modified="2016-01-20" version="1">MYETLTWDVDADGVATLTLSRPDALNAFDLTMARELEQVFLTDARDDAVRAVVVTGSGRAFCAGMDLSAEGNVFGLDETVRPTPQEFRASYDEEPYASGVRDTGGKVTLAIHALPKPVIAAINGPAVGIGATMTLAMDIRMASEKARIGFVFGRLGIVPEACSSWFLPRIVGIQQALEWVYSAEILTAEQALAGRLLRSVHAPDDLLPAAQELARSFVKDRSPVALGLAKQMLYRNGAAEHPLEAHLTDSLAMYWTSIGDGKEGVAAFLEKRAPQFSGKASELPPIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMY1</accession>
    <name>A0A0Q8UMY1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_21225</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896129.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46358">
        <property type="protein sequence ID" value="KRC46358"/>
        <property type="gene ID" value="ASE19_21225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1753926at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006825">
        <property type="term" value="P:copper ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046688">
        <property type="term" value="P:response to copper ion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032694">
        <property type="entry name" value="CopC/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007348">
        <property type="entry name" value="CopC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008457">
        <property type="entry name" value="Cu-R_CopD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014755">
        <property type="entry name" value="Cu-Rt/internalin_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34820">
        <property type="entry name" value="PTHR34820"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04234">
        <property type="entry name" value="CopC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05425">
        <property type="entry name" value="CopD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="SSF81296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0186">Copper</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0732">Signal</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359230" evidence="9">
        <location>
            <begin position="31"/>
            <end position="549"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="153"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="191"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="232"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="256"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="295"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="326"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="361"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="404"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="domain" description="CopC" evidence="10">
        <location>
            <begin position="29"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="CopD" evidence="11">
        <location>
            <begin position="322"/>
            <end position="426"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF04234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF05425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC46358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="549" mass="56155" checksum="4978127C0C146155" modified="2016-01-20" version="1">MLKRAPALVAALLLAAVAVLGLAAPASAHATLVSTDPAEGAVLASAPDQVTFTFDEPVQLVPKGVLAFDAAGDQVDVDASAKDTEVVAELPGDLDDGTYVVTWRVVSSDGHPIAGSLTFHIGAPSPKVEAPKLGPTDPGAVPTIQAVVHGLDYAALLLAGGLAVFLAWTARGVRLPDPVRRRLLRTLRASALVAVLAAAAAVPLAGAYQLGTGAGGILTLDALDPALVQDDLQVLALQVAGLGVAVWAAGLARSSLVVDLVTALAVWSPALVGHTRAYEPTTLLVVTDALHLTAGAVWLGGLVGLALTLPAISGRARDAALLLSRFSTLAGGLLAALALTGVLLGWRIIGSWSRLVEETYGRLLLVKVALVLVVVAIAAWNRFRLVPRVTDGVGHDDRRRASGLVRRTVVAEAALLVAVLGVTGFLTQKPPGGEAPAQPATADTGVVSGIASDDLKVLAVLDSGTGLQRRLIVQVQDLAGDPLDLYDAPAVALRNDTVDLGAVTVVPSGAGTFVADVVFPTAGRWQLQVSVRVDAFTSPVTTLDLDVSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMZ7</accession>
    <name>A0A0Q8UMZ7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Succinate-semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">gabD2</name>
        <name evidence="5" type="ORF">ASE19_21350</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896150.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46379">
        <property type="protein sequence ID" value="KRC46379"/>
        <property type="gene ID" value="ASE19_21350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="293754at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="4">
        <location>
            <begin position="36"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="534" mass="55723" checksum="AF81330B5E46CCE8" modified="2016-01-20" version="1">MTALAGSTVSVRPAWVTDARLAEWTRWVFRDPAGTATSTATAPYDGLPIASVPVSSAADVADAIAGARAAQRPWAQLPWANRAAVVLRFHDLLVERQDEVIDLIQWEMGKARFSAWQEILQVANIARHYGCHGKHYVGTTKVRGAMPGLTKVREVRVPKGVIGMISPWNYPLYLAVGDVIPALLAGNGVVSKADSQTPLTLLWTRALMAEAGLPTDLWHVVVGPGAVIGDALIGSPDGAPGVDHICFTGSTATGRSVGRRAGEMLIAASLELGGKNPLVVLADADVEKAAAGCVAAAFANTGQMCIHIERVIVHEAVYDAFRTSLVAATEALTIGQTFDYSVDVGSLASPAQLEAVTSHVASAVAAGAVVLAGGRARPDLGPLVHEPTVLEGVTAEMPVCLEETFGPVISLYRVSSDQEAVLKANEGSYGLSASIWSRDTGAAEALATRIRSGSVNVNDGAAAAAGSIEAGMGGMGDSGLGRRHGAEGMRKYTESQTVATQRLVPLGPPSGMALDRFVGLGNAQLKLLRRLRVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMZ8</accession>
    <name>A0A0Q8UMZ8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21325</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46374">
        <property type="protein sequence ID" value="KRC46374"/>
        <property type="gene ID" value="ASE19_21325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="39"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="3">
        <location>
            <begin position="117"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="330" mass="35708" checksum="5ACB13A7A0C4A0FC" modified="2016-01-20" version="1">MTTAQGVWKRLGWPLRIVTVAVVLGLVLLGVRSLGGAPSYHVRLRHAAGIEPGDDVRVAGLKVGKVRAVEADRDQVDVAFSLDQAPADLGITDDSTVEVKLLSILGQRYLSLTPGSGEALADGGTIALEHAVDSYTIERFWLETTPQVEALDLDRIQKAVDVLATDLKVTPTALRDAVDGIAGVSAIVNDREQEITELLTSTRKVTDLVLEQTDELDRVMSNGTAVMLMVQQRKEVLRALLRDANRFVTGLTAVVRTTSPQLAPALRDLRTVLGVLRKHSRQLDRTMQLAGPTMRVFTNATGDGPWLGVNAPWAIVPDDLVCSITPEDCQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNA3</accession>
    <name>A0A0Q8UNA3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21890</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896244.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46475">
        <property type="protein sequence ID" value="KRC46475"/>
        <property type="gene ID" value="ASE19_21890"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1541733at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="66" mass="7136" checksum="707326D4AB6362FA" modified="2016-01-20" version="1">MRQFLDYCSELLSLVGKAAALCAEESHDAVVLDTVSTIEALTVSLERKVWQKITVLNAARESGPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNQ6</accession>
    <name>A0A0Q8UNQ6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Transcriptional regulatory protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_20575</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896385.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46616">
        <property type="protein sequence ID" value="KRC46616"/>
        <property type="gene ID" value="ASE19_20575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024187">
        <property type="entry name" value="Sig_transdc_resp-reg_cit/mal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45526">
        <property type="entry name" value="PTHR45526"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006171">
        <property type="entry name" value="RR_citrat_malat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0010">Activator</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="2" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="1"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="3">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR006171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="23246" checksum="58228D6D8F82B829" modified="2016-01-20" version="1">MVARIHGRFVEQTDGFEVVGTARTGAEALELVTSLRPDLLLLDVHLPDLSGLDVLEQLRGRGEDVAVVMVTAERGAAAVRAALHGGALQYLVKPFEYDDLADRLRRVAATLASLSGDPALPHATEVDQATIDQAFGTGRAADVPVVLPKGLSPETADLVLEAARTAGEISASEAADVVGLSRVTARRYLEHFVDSGAAEVRLQYGGTGRPERRYRVVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNT3</accession>
    <name>A0A0Q8UNT3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_22025</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896417.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46648">
        <property type="protein sequence ID" value="KRC46648"/>
        <property type="gene ID" value="ASE19_22025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1309950at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041669">
        <property type="entry name" value="TetR_C_15"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17918">
        <property type="entry name" value="TetR_C_15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="22"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="185" mass="20005" checksum="A098F1EABBB30694" modified="2016-01-20" version="1">MVDRIVTAGRSVLVQHGYDAFSANRIAAVAGVSPGSVYQYFPDKAAILDVVIDRYWAEVAESVAASLADRIADFGPAMVRSTADALVTALEADPVVLRVVAEELPIGRNRDRRAALERRVRELVTTYLAARPGTHRRPSPALAAWVVVLAIENLALRWVLDQPEAVSRDALLDEMVALVGGYLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8USN8</accession>
    <name>A0A0Q8USN8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21305</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46633">
        <property type="protein sequence ID" value="KRC46633"/>
        <property type="gene ID" value="ASE19_21305"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="186"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="218"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="253" mass="26366" checksum="9A16B530DA171652" modified="2016-01-20" version="1">MAEVLALLRFTRRVFAAVLTSVTSRRFPLAETVLQTWYAIRVCTLPALAVSVPFGIILALQVGVLAQEVGAVAFTGAGNTLAVVRQASPLITALMLSGVAGSAICADLGSRRIREEIDAMEVMGLSVMERLVVPRMFAIVAVAVLLNGVVMFFTILTTLSISVVIQDLPPGSYLASVTTLAQLSDLWLSLAKAAIFAVICAIVASYKGLGASRGPTGVGEAVTSAVVTNFVLLFAANFVISQVYSTFGGGPIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UTD6</accession>
    <name>A0A0Q8UTD6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA-binding protein KhpA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">KH-domain protein A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">khpA</name>
        <name evidence="2" type="ORF">ASE19_20065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">A probable RNA-binding protein.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the KhpA RNA-binding protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895938.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46163">
        <property type="protein sequence ID" value="KRC46163"/>
        <property type="gene ID" value="ASE19_20065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1940160at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00088">
        <property type="entry name" value="UPF0109"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020627">
        <property type="entry name" value="KhpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34654">
        <property type="entry name" value="PTHR34654"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="79" mass="8673" checksum="871B392A991C1AF7" modified="2016-01-20" version="1">MLADALEHLVRGVVEHPDDVVVRDKQLRRGSVLEVRVHPDDLGKVIGRGGRTATAFRTVVSAIAGNGNTRIDFVDTDRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU98</accession>
    <name>A0A0Q8UU98_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">RNA polymerase sigma factor SigA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">sigA</name>
        <name evidence="9" type="ORF">ASE19_17625</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Interacts transiently with the RNA polymerase catalytic core.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the sigma-70 factor family. RpoD/SigA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893153.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48750">
        <property type="protein sequence ID" value="KRC48750"/>
        <property type="gene ID" value="ASE19_17625"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1565734at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00963">
        <property type="entry name" value="Sigma70_RpoD_SigA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009042">
        <property type="entry name" value="RNA_pol_sigma70_r1_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007624">
        <property type="entry name" value="RNA_pol_sigma70_r3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007127">
        <property type="entry name" value="RNA_pol_sigma_70_r1_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012760">
        <property type="entry name" value="RNA_pol_sigma_RpoD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028630">
        <property type="entry name" value="Sigma70_RpoD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03979">
        <property type="entry name" value="Sigma70_r1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00140">
        <property type="entry name" value="Sigma70_r1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04539">
        <property type="entry name" value="Sigma70_r3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02393">
        <property type="entry name" value="RpoD_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00715">
        <property type="entry name" value="SIGMA70_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00716">
        <property type="entry name" value="SIGMA70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 6" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="RNA_pol_sigma70" evidence="7">
        <location>
            <begin position="292"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_sigma70" evidence="8">
        <location>
            <begin position="461"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="6">
        <location>
            <begin position="462"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="region of interest" description="Sigma-70 factor domain-2" evidence="6">
        <location>
            <begin position="268"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="region of interest" description="Sigma-70 factor domain-3" evidence="6">
        <location>
            <begin position="347"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="region of interest" description="Sigma-70 factor domain-4" evidence="6">
        <location>
            <begin position="436"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Interaction with polymerase core subunit RpoC" evidence="6">
        <location>
            <begin position="292"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS00715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS00716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC48750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="501" mass="53933" checksum="605F681192938F47" modified="2016-01-20" version="1">MFVSSNRSVPPAVLTHPSIVALIERGAPAGSVTAEDVRQAFGAADVAPAHLKSLMAHLSGLGISVELGAPADQRAVAAAARKGGATATASTAKKAAAPAKKAAAAPAAKKAAAPAKKTAAAEKKADEAEVVDLGDVAVAAVGPDGKKILPDIPDDQFEKDVAADPSIKEDEEEATATSSFVVSAADDTDEPAQQVMVAGATADPVKDYLKQIGKVPLLNAEMEVSLAKRIEAGLFSDEKLARGGKLSPKLQEELEWIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAIVPADAVSFTLLQEQLHAVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUM0</accession>
    <name>A0A0Q8UUM0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17750</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893174.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48772">
        <property type="protein sequence ID" value="KRC48772"/>
        <property type="gene ID" value="ASE19_17750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1288973at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="223" mass="23346" checksum="3D22FFE14ABE67A7" modified="2016-01-20" version="1">MDEAFGQRVSRLGALADPVRRALYRFVAEQPGAVSRDQAASGVEVPRHTAKFHLDRLVEEGLLVTEFKRLTGRSGPGAGRPAKLYRRSGREVVVSVPSRRYDLAGQVLADAVERNLAGTPMPEALDGAADAAAAAVLAQWPAAGDGLVAALGPLGYEPRETAEGICLGNCPFDRLAVDHRDLVCGVNHAFVGALADRLDPGSTAVAVEPGTGCCVRVRTAASP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUM5</accession>
    <name>A0A0Q8UUM5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sulfurase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19570</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895856.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46080">
        <property type="protein sequence ID" value="KRC46080"/>
        <property type="gene ID" value="ASE19_19570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1643056at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005302">
        <property type="entry name" value="MoCF_Sase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011037">
        <property type="entry name" value="Pyrv_Knase-like_insert_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03473">
        <property type="entry name" value="MOSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50800">
        <property type="entry name" value="SSF50800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51340">
        <property type="entry name" value="MOSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MOSC" evidence="1">
        <location>
            <begin position="29"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="230" mass="25095" checksum="3B11A465F0E49570" modified="2016-01-20" version="1">MTARVLTISVGSPQDKEWAGIGRTSIDKTAVAGRVRVHELGIEGDQVSDTLHHGGPDQAVYAFAREDLDFWERELGRPIRDGQFGENLTTVGIDLNALEIGTRLRVGDEVDGVLLEVVYVRTPCNDFKGWMGESGYDPRAWVKRFAAAARPGPYLRVLETGTIEAGAPIEVVHRPGHGVSVSDMFVALNTDRSRLPELLVIDGLLPKVRMKAEDFVRQVAASLPSVDPVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV93</accession>
    <name>A0A0Q8UV93_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">Glutamate racemase</fullName>
            <ecNumber evidence="2 7">5.1.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">murI</name>
        <name evidence="8" type="ORF">ASE19_20540</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Provides the (R)-glutamate required for cell wall biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>L-glutamate = D-glutamate</text>
            <dbReference type="Rhea" id="RHEA:12813"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:29986"/>
            <dbReference type="EC" id="5.1.1.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the aspartate/glutamate racemases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.3" evidence="2 7"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896011.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46240">
        <property type="protein sequence ID" value="KRC46240"/>
        <property type="gene ID" value="ASE19_20540"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1718671at2"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008881">
        <property type="term" value="F:glutamate racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00258">
        <property type="entry name" value="Glu_racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015942">
        <property type="entry name" value="Asp/Glu/hydantoin_racemase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001920">
        <property type="entry name" value="Asp/Glu_race"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018187">
        <property type="entry name" value="Asp/Glu_racemase_AS_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033134">
        <property type="entry name" value="Asp/Glu_racemase_AS_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004391">
        <property type="entry name" value="Glu_race"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21198:SF2">
        <property type="entry name" value="PTHR21198:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01177">
        <property type="entry name" value="Asp_Glu_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53681">
        <property type="entry name" value="SSF53681"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00067">
        <property type="entry name" value="glut_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00923">
        <property type="entry name" value="ASP_GLU_RACEMASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00924">
        <property type="entry name" value="ASP_GLU_RACEMASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="21"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="53"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="85"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="195"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="7">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="7">
        <location>
            <position position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="277" mass="29583" checksum="657407C10503A07E" modified="2016-01-20" version="1">MRHPDQRDVGVDLDAPIGIFDSGFGGLTVARSVIDQLPHESITYVGDTARQPYGPKPIGEVREYALECLDHLVEQGVKALVIACNSASAAMLRDARERYDVPVVEVILPATRRAVAASRNGRIGVISTRATAESLAYDDAFAAAPHIDLTTRACPRFVDFVEAGVTGGDELIAVAHEYLDPLSELGIDTLILGCTHYPLLTGVISYVMGDEVTLVSSAEECAKDVYRRLADTGLMRPTGVPTYTFTTTGSPAEFETIGRRFLGPELVAAGQFAGGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVD6</accession>
    <name>A0A0Q8UVD6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19530</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917998.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49076">
        <property type="protein sequence ID" value="KRC49076"/>
        <property type="gene ID" value="ASE19_19530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2034937at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="98" mass="10640" checksum="D918A88FD8B5F971" modified="2016-01-20" version="1">MTGMARPRFSSPAWWFRSQDGRWAVAQPPNPAISVWIAAVLIGFLPLSPAHATTVEGVGHGALIVWSLDEVVRGASPFRRVLGAVVLIGQLLLLARDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXV6</accession>
    <name>A0A0Q8UXV6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_15910</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893568.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50101">
        <property type="protein sequence ID" value="KRC50101"/>
        <property type="gene ID" value="ASE19_15910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1135592at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016653">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006784">
        <property type="term" value="P:heme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003780">
        <property type="entry name" value="COX15/CtaA_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02628">
        <property type="entry name" value="COX15-CtaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="79"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="104"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="134"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="174"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="214"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="246"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="271"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC50101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="298" mass="31572" checksum="34B2F0863E3748AB" modified="2016-01-20" version="1">MTTSTPTRLESLQHALGARLVPLAWANLVANILIVVTGGAVRLTGSGLGCPTWPKCTDAKWTYHSELGLHGVIEFGNRLLTYVLVAIAIACWVAARDRAAQHPLAVRLSTIIALGIPAQAVIGGVTVLTDLNPWIVALHLLVSMAIVGVCVGLVDHLNGPTRASAPLGVRRLVAVLFAAGWVVLYLGTVVTGSGPHAGDDEAPRNDLDPQVMSHVHAASVYLLVALTLLVVWRARRLGLLALHRAACLLLVVELAQGTIGFWQYLTDLPEILVGIHMLGAGLTAAGMTRVLLTTRARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXW3</accession>
    <name>A0A0Q8UXW3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PEP-utilizers domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16055</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893592.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50124">
        <property type="protein sequence ID" value="KRC50124"/>
        <property type="gene ID" value="ASE19_16055"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016772">
        <property type="term" value="F:transferase activity, transferring phosphorus-containing groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008279">
        <property type="entry name" value="PEP-util_enz_mobile_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036637">
        <property type="entry name" value="Phosphohistidine_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00391">
        <property type="entry name" value="PEP-utilizers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52009">
        <property type="entry name" value="SSF52009"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PEP-utilizers" evidence="1">
        <location>
            <begin position="93"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="180" mass="18917" checksum="B1647632A1A5AF39" modified="2016-01-20" version="1">MGLGQLDRVEDIFYLTLDQAFCSREDLRATVARRRAERERLKAITMPDIVVGHWEPAADEQALAVGGSVSGLGVYPGIVEGRVKVLRGPDDDIEPDDVLVASVTDVGHTAMFAYAAAVVTDIGGAASHAAIVAREFCVPCVVDTKHATSSFVDGQLVRVDGAAGTITLLEDAPVEAASLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYG3</accession>
    <name>A0A0Q8UYG3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17035</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50299">
        <property type="protein sequence ID" value="KRC50299"/>
        <property type="gene ID" value="ASE19_17035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1079953at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="328" mass="36936" checksum="72C148D76E9BD3D0" modified="2016-01-20" version="1">MNHQLRTRPEQAPAAVVERLVALACLAPSVHNTQPWRWRYDDGILELHADLRRRLPAEDPRGRNLTISCGAALHHLQFAARALGWDTTVERLPAGLPETVLARVVISRTTHHAVARGDIDLLRTRCTDRRRFTAWPVPADRLDDLGRRAAAWGVLTEAVTSDAARFRLELLANRAISFLEVEGRRLLEQDRWIDRGGSDGIPLDLLPEDPDPLHARSRFRPGILEDTRLVIHGGERVIALGGPHDDVAGWLRTGEAMSDLWLEATRAGMSVIPMSQPMEVESIRHEIARTVLASRFEPHLLLRVGWQAIGRRGLPRTPRRPLRDVLEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V026</accession>
    <name>A0A0Q8V026_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21490</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896177.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46407">
        <property type="protein sequence ID" value="KRC46407"/>
        <property type="gene ID" value="ASE19_21490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2098134at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="61" mass="6788" checksum="AAB28CAF8F26D0C9" modified="2016-01-20" version="1">MRTPIDLLRRRWRAPGQHDQRGDVPGWVLVTVMTIGLGVAIFGLARPQLLAILQSALNSVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0J4</accession>
    <name>A0A0Q8V0J4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22245</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896303.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46535">
        <property type="protein sequence ID" value="KRC46535"/>
        <property type="gene ID" value="ASE19_22245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="520970at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002403">
        <property type="entry name" value="Cyt_P450_E_grp-IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00465">
        <property type="entry name" value="EP450IV"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0349">Heme</keyword>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="446" mass="49985" checksum="D4F42435DBBDBF2C" modified="2016-01-20" version="1">MPTSQVTRELPPVRRGDHGLPLLGRVTDYARDPVALMRHQYDTYGPVSPFPFLGRTFVMLLGPDACEEALRNADKAFANEPAWGRLVGPFFHRGLMLLDGEEHHVHRRIMQEAFTRDRLASYVEAMHPAIARGIDAWSGGDGFRCYPALKQLTLDIAADIFMCGAADTSPAQMQRVNEAFIACVQAASGVVRADVPLTRWGRAYRGRKVLEDFLRHYLPAKRAERTGDLFSVLCHIEGEDGERFTDDDVVNHMIFLMMAAHDTSTITTSTMLQHLGQHPEWQERCRAESLALGEAPGLAELDQLTSLDLVMKESLRLRAPVPMLARQAVRETVVQGVRVPAGSHVAVGVQFSHLMPGLWTDPERFDPDRFGPERREDKAHRYAWSPFGGGVHKCIGLHFAGAEVKAILHRLLRTHRWHVDPSYVAPLDNHSLPFPKDGQPIDLVRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1S5</accession>
    <name>A0A0Q8V1S5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_15165</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896489.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51422">
        <property type="protein sequence ID" value="KRC51422"/>
        <property type="gene ID" value="ASE19_15165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1425894at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010619">
        <property type="entry name" value="ThrE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024528">
        <property type="entry name" value="ThrE_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06738">
        <property type="entry name" value="ThrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12821">
        <property type="entry name" value="ThrE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="122"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="171"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="200"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="241"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="274"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="328"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="352"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="388"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="domain" description="ThrE" evidence="6">
        <location>
            <begin position="12"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="domain" description="ThrE_2" evidence="7">
        <location>
            <begin position="286"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF06738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF12821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC51422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="447" mass="46122" checksum="F1DC21FDA2DCB613" modified="2016-01-20" version="1">MDDLRTLHRTLDLCLKVGEVLLSSGAGAPDVVATMRALARALGVRHTQVDVTFTALAMSVQQGPDEPPVVQLRAVTQREIDYEDLTRVDHLVRDVVAGRTDLEGARTELGQIVSSGHARPRWAATLGVGVMCGGVGLQLGGGFVVVLVAMLAAICIDRLQLVMTRRRLPGFYQQVAGGVVATLLAALGTRLAEPWVHLNASLVVTANIVMLLAGIGFVGAIQDALSGFFVTGGARVLEAVLATAGIIAGVSGGLSVAATVGLEIPSLALPRFDLAGVTSAALGGGVAAAAFAFACYAPLRTLVPVGVLGGLGIAATESIGEAGFGRPWAVGVAAFFIGLFGYTVGRRFRVPPLVVVVSAVVPLLPGLSIYRGLFLLAEDGGQQVAQGLLAMVTAASVAIALASGVILGEYVAQPVLREARRVEARLAGPRLVGVTRSVRKRRRGRSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1Y1</accession>
    <name>A0A0Q8V1Y1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">SHSP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_15425</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the small heat shock protein (HSP20) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896531.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51467">
        <property type="protein sequence ID" value="KRC51467"/>
        <property type="gene ID" value="ASE19_15425"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1523369at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002068">
        <property type="entry name" value="A-crystallin/Hsp20_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008978">
        <property type="entry name" value="HSP20-like_chaperone"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00011">
        <property type="entry name" value="HSP20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49764">
        <property type="entry name" value="SSF49764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01031">
        <property type="entry name" value="SHSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SHSP" evidence="3">
        <location>
            <begin position="26"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC51467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="145" mass="16103" checksum="D5847314B8B34EDE" modified="2016-01-20" version="1">MLLRTTDPFRDFDRLAGQLLGAGSGTTNRPAAMAMDAWRQGDEFVLEFDLPGVSRESIDIDVERNVLTIRAERVPGNGDWQRLASERTHGQFSRQLVLGDNLDLDRIDARYDNGVLRLAIPVAERAKPRKIEIGGAAEKTEAIEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2G5</accession>
    <name>A0A0Q8V2G5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16120</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893605.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50137">
        <property type="protein sequence ID" value="KRC50137"/>
        <property type="gene ID" value="ASE19_16120"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1261526at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="281" mass="29379" checksum="93BF2EC1B6246E07" modified="2016-01-20" version="1">MTQNSTGGRLAGRTLMMSGGSRGIGLAIGLAAAREGANVVLLAKTDLPDPRLPGTVHTAAAEIEAAGGQALAVVGDVRDEASVENAVARAVDRFGGIDICINNASAIALDGTAELPVKRFDLMTQIQLRGTYLLTRACLPHLRQGTNPHILSLSPPLNLSPEWLGKHPAYTLAKYGMSLLTLGWAAEYADDGVAANCLWPETLIATAAVQNLLGGDDAMAKARTPEIVADAAIEVLVRPSRELTGQTLLDVDVLRDAGVTDLSSYGGTGELEYDIFVDGPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3P2</accession>
    <name>A0A0Q8V3P2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Bac_transf domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_18255</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial sugar transferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893262.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48861">
        <property type="protein sequence ID" value="KRC48861"/>
        <property type="gene ID" value="ASE19_18255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1759731at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003362">
        <property type="entry name" value="Bact_transf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017475">
        <property type="entry name" value="EPS_sugar_tfrase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02397">
        <property type="entry name" value="Bac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03025">
        <property type="entry name" value="EPS_sugtrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="36"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="88"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="112"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="288"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_transf" evidence="8">
        <location>
            <begin position="282"/>
            <end position="469"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC48861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="475" mass="49882" checksum="3818F2AAB4CAB6F8" modified="2016-01-20" version="1">MTVLPSRGIAVPATAGRDRAAPTVLRASRVLPAGDAAAALLGGALATAGPIGLSPHLAVLFALAWPLAISTTGDYRLPGPPWARARRVGLVALVVPTPLLLLTAAAERPLLPLGALALSVGTAVLGIGSRACLATAAERGLPVVGLGPVHRVVAVGSSGSVTNLLAQLAQAGAGRFRVLGACVVDTGPCGPVPGPTTTGLQTCVGLARACDADAVLVAPDPSLDAAELRRLQWSLDAAGLETLVWTGISPLPAPGRTSFDLDDLPLLRVGRPRRLAASYTAKRALDRLVALLALLALAPLLALLAVAVRLDSDGPAFYRHTRVGKDDTRFTMWKLRTMTAHTASTRAALARANQASGPLFKIRDDPRITRLGRWLRRTSLDELPQLLNVALGQMSLVGPRPALPAEVLQYDPDVRHRLAVHPGITGLWQVSGRSDLSWEESVRLDLRYVDDWSWALDLQILARTVTAVCRGDGAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5C2</accession>
    <name>A0A0Q8V5C2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GATase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09195</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52606">
        <property type="protein sequence ID" value="KRC52606"/>
        <property type="gene ID" value="ASE19_09195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1242215at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01741">
        <property type="entry name" value="GATase1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044992">
        <property type="entry name" value="ChyE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42695">
        <property type="entry name" value="PTHR42695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GATase" evidence="1">
        <location>
            <begin position="22"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="25076" checksum="76AAAD482CC25BA3" modified="2016-01-20" version="1">MGRRLLLIGHDYLAAGGIEERFVQRGYDVERVQVVPPDRFEDPGVDADLPDPRDYDALLVLGARWSVYSDEVASWVKPELELLHTADEAGVPVLGICFGGQMLAQAHGGEVVASPAPEIGPHVVAGVPAVAGVWTQWHYDKFVPPADATVVGVSAAAPQAFVLRRNLAVQFHPEVDEESVRGWVEDGGAQMARDRGLDPEVLLEHVASLDADVRVRAGALVDYFLDDVAADR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6R7</accession>
    <name>A0A0Q8V6R7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycerophosphodiester phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16415</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893657.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50189">
        <property type="protein sequence ID" value="KRC50189"/>
        <property type="gene ID" value="ASE19_16415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1542724at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="SSF51695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GP-PDE" evidence="1">
        <location>
            <begin position="9"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="262" mass="28953" checksum="8E200D3E99450162" modified="2016-01-20" version="1">MPYLPRGRVLAFAHRGGAYHPEIEGLENTMAAFRHAAALGYDYLETDVHLTADGVLLAFHDDVLDRVTDQQGAVRELTLADVRRARIGGREEVPTLVDLLDAFPGARFNIDIKSDDAVAPLAQLVRERGLWDRVLIGSFSRKRIRRFRALTDGRVPTAADPLQVVAWRLSPSARLARLLAGGGFAAFQVPHRHRRLVVVTPGLVRRAHAAGVQVHVWTIDDPAEMVELLDLGVDGLFTDRTDLLKDVLQGRGQWWSLGGTTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6U4</accession>
    <name>A0A0Q8V6U4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_17865</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893193.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48791">
        <property type="protein sequence ID" value="KRC48791"/>
        <property type="gene ID" value="ASE19_17865"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2049274at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028964">
        <property type="entry name" value="Imm8"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15586">
        <property type="entry name" value="Imm8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="87" mass="10054" checksum="C1042503390F7A41" modified="2016-01-20" version="1">MIVGPADGPGEESFDMTLCTPEWLAGEAKGGFYDARHHLVVDFEAFDRNALHRWLTKRVQSVQADTWHEIGERLGRLGYWEFEDYQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7F3</accession>
    <name>A0A0Q8V7F3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_13115</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895754.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53292">
        <property type="protein sequence ID" value="KRC53292"/>
        <property type="gene ID" value="ASE19_13115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1926714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="10"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="42"/>
            <end position="49"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="240" mass="25354" checksum="FF563F2BAF541BFF" modified="2016-01-20" version="1">MTGRALFRGVLVDALRVEFGAVEAVTGVDLRVEQGQAVALLGRNGAGKSTTMRVLAGVVPPSAGSALVGGYDVREATLEAKRVVGYCPDVGGLVPRATPWEHLQLSARLRDLADWEGRGRRLLERFDLGDVAHRVTSGFSHGMSRRLSVVLAALHEPDVLLLDEPFDGVDPVGVEATFDVIEDARARGAAVLVSTHLRDLAVEVCSEVAVLRGGSRMATISSGFMAGDEGARAYRALLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7R8</accession>
    <name>A0A0Q8V7R8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12470</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895110.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53183">
        <property type="protein sequence ID" value="KRC53183"/>
        <property type="gene ID" value="ASE19_12470"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019674">
        <property type="entry name" value="Lipoprotein_LpqN/LpqT-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10738">
        <property type="entry name" value="Lpp-LpqN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359783" evidence="2">
        <location>
            <begin position="32"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="227" mass="23397" checksum="F3000E643E6C08AF" modified="2016-01-20" version="1">MKHPARHLAAPAALLLALVLAACDDEPGARAANVRTSADPTETPGAQTDEPDASGDPTTILEYLQQGGFEQTALGPDDGGPVVALPELDGWSPSDDYASEASYGALVHDAASDATQPPRVLVLLARIDGGADPARILELAPGELLGLDGYTPMDEGESSTLGAYDAVQVFGTYSNGGHELVIAQKTVVIPHGDELHVLQVNAYAPPAEVDVLVTALSEIDATTTITP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7U9</accession>
    <name>A0A0Q8V7U9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Alkane 1-monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">ASE19_13185</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <reference evidence="15 16" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(3+)</name>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell inner membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the fatty acid desaturase type 1 family. AlkB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53304">
        <property type="protein sequence ID" value="KRC53304"/>
        <property type="gene ID" value="ASE19_13185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03512">
        <property type="entry name" value="Alkane-hydroxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00730">
        <property type="entry name" value="rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033885">
        <property type="entry name" value="AlkB/XylM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005804">
        <property type="entry name" value="FA_desaturase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024934">
        <property type="entry name" value="Rubredoxin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024935">
        <property type="entry name" value="Rubredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018527">
        <property type="entry name" value="Rubredoxin_Fe_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38674">
        <property type="entry name" value="PTHR38674"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00487">
        <property type="entry name" value="FA_desaturase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00301">
        <property type="entry name" value="Rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00202">
        <property type="entry name" value="RUBREDOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50903">
        <property type="entry name" value="RUBREDOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0249">Electron transport</keyword>
    <keyword evidence="11" id="KW-0408">Iron</keyword>
    <keyword evidence="13" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12 15" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="12 15" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="25"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="51"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="92"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="155"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="257"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="285"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="Rubredoxin-like" evidence="14">
        <location>
            <begin position="443"/>
            <end position="495"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KRC53304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="502" mass="56850" checksum="C5BB0D4E2823186A" modified="2016-01-20" version="1">MTGSMEIGQTVPDGSTEQWKDKKRYLWLWGLMVPGFGVLFALAYIATGGWWGFTLVAPFLVNFLIPLLDLAMGTDQSNPPDEVIEELENDKYYRWVVFAYVPMMFALVFAGYYIIGEGNPVAWLLNHVGLGNWGDAHLSANLMADHLELPWWEKALWALSIAGVVGIGINTAHELGHKKESVERWLAKITLAPTFYGHFYIEHNRGHHVRVATPEDPASSRLGESLYRFWPRTVWGSLKSSWEVEAKRYRRKGTHPFHLGNDVLNAWAMSVALWAAVIALNGWQVAIYIPITVVFGFSLLEVVNYLEHYGLKRQRVGEKQRYERVLPMHSWNSNNIVTNIFLYHLQRHSDHHANPTRRYQALRDFKESPALPTGYAGMINLALIPPLWRKVMDPRVVEHLDGDVTLANIAPGKEAKYLAKFPPPAVHDVHKEDLFAQKFEGEVLAAKCPGCAYVYEVAAGDEHEGFAAGTAWSDIPDDWCCPDCGVREKIDFIPFDPEKVKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8K8</accession>
    <name>A0A0Q8V8K8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gluconolaconase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14270</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897004.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53499">
        <property type="protein sequence ID" value="KRC53499"/>
        <property type="gene ID" value="ASE19_14270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="966287at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359807" evidence="1">
        <location>
            <begin position="32"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="326" mass="34203" checksum="96E26FD84A3EF681" modified="2016-01-20" version="1">MKRTHLISSSLLLATAATLGLAGANATTAAADAGGRPDTYVLQGDAASPVGSKFEGIGADEVRGLFYVSEVTGGEIHRGSVRTEQTEEWLKGDGTDGRFTARGITVDAEGNVYVAGGPNGIGTGRPDLWVYSKEGELLAALRVPGTADAFLNDVAIGRDGAAYFTNSNDPQLFRVAQGANGWEATLFADATGTITRSIGFNLGGIVLSADRSAFVVAQGNVGRMWRFDARTGEVGEIATDTDLVNADGLVRRGNRLTVVRNFSRMVATLRVSADGSRLVTLGQEASAADRVLTTAKNLHGRVLYVDSKFDEAVASGPYEIVTDPTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8M1</accession>
    <name>A0A0Q8V8M1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14150</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897027.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53476">
        <property type="protein sequence ID" value="KRC53476"/>
        <property type="gene ID" value="ASE19_14150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1356861at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="262" mass="26467" checksum="202B0C10598D31F0" modified="2016-01-20" version="1">MTDLELAGRKAFVTGGAQGLGKKFAEHLTAAGATVVVADLQDEKGKEVAESIGGTFVHLDVTDDASWEAAVAQAVSEVGGLDILVNNAGIEIASLFINLDADVARRIFDVNVVGTSLGIKHAFRTMGPGGAGGKGGSVINVASVAAHIAFPALSQYSASKSAVDRITRVAAMEAGKLGLGVRVNCVAPGLIPNEMGAGLANELTAMGLFESAEAAVGQVVELTPSGGLATEEDIAEAVVFLASDRSKFINGVDLSVDGGMGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8M4</accession>
    <name>A0A0Q8V8M4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Iron ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_14365</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896988.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53515">
        <property type="protein sequence ID" value="KRC53515"/>
        <property type="gene ID" value="ASE19_14365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1283908at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="PTHR30472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="106"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="135"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="168"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="210"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="259"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="300"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="328"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="353" mass="35667" checksum="BB68477836628832" modified="2016-01-20" version="1">MLRPVRPARTRPGAGLVTGVALTALLVVSVVVAVGIGSVHVQAGDVVDVVLGRLGVPVDGVTVIDDRIVWQLRMPRVIGAAATGAGLAIAGAVLQSLTRNDLADPYLLGISGGATVGAVSVIVLGAGAAGLVGNAALAAGAFVGAMLALALVLMLATGRTGDLPPARTVLAGVAIGQMCGAYTSFVVIVSGDHDSARRVLAWTMGSLAGVRWQSATILLVVSVLALVVIIGCASDLDAFAFGDSAASSLGVSIRRVRWLLMVGTALLTAGLVAYTGAIGFVGLVVPHAVRLLVGPLHRRLLPLSALAGAVLLIWADTAARSLLDGQEIPIGVVTAVFGAPLFAYLLRRESRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8N8</accession>
    <name>A0A0Q8V8N8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycerol acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17165</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893791.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50322">
        <property type="protein sequence ID" value="KRC50322"/>
        <property type="gene ID" value="ASE19_17165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1756450at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PlsC" evidence="1">
        <location>
            <begin position="52"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="238" mass="25780" checksum="0AA81DE01BD0FD73" modified="2016-01-20" version="1">MSAHDAAPRSDGVPPPARWLLVRGRPTSRWLIRRRYDVHVHHPERFPASGPVVVAGNHVGFVDGPLMAIFAPRPVHALTKQEMFSGALGWFLRRAGQVPLDRFHTDVRAVRTALRVLRDGHAVGVFPEGTRGPGDLAEFHTGAAYLALVTGAPVVPLTFLGTREPGGTSSSLPPKRARIDIVVGEPMAVDAVSWPRTRDHVRLTSAALRAHMRSGLADALEETGRSLPGPLPQGDRDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8N9</accession>
    <name>A0A0Q8V8N9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14235</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897011.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53492">
        <property type="protein sequence ID" value="KRC53492"/>
        <property type="gene ID" value="ASE19_14235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984437at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041581">
        <property type="entry name" value="Glyoxalase_6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18029">
        <property type="entry name" value="Glyoxalase_6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyoxalase_6" evidence="1">
        <location>
            <begin position="9"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="Glyoxalase_6" evidence="1">
        <location>
            <begin position="119"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="223" mass="24540" checksum="4786AAF3792FCBAA" modified="2016-01-20" version="1">MPLATFKDLCIDAVDAPALGRFWAAVLGLELELLDDGDARLTGPTPQHTVWVNTVPEPVTVKQRVHLDVNAHRVEEVLELGASAVDLSSYRWKVLRDPEGGEMCVFEESDLPDRRLLEVVIDAADPPALASWWAGLLGAVAKDDPEGRWSWVEQIPAAPFEHIVLMPVQEPKTVKNRIHLDVETASVDGLVAAGARVLRAQDEQIRWTVLADPDGNEFCAFVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V955</accession>
    <name>A0A0Q8V955_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molecular chaperone GroES</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06715</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895217.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53786">
        <property type="protein sequence ID" value="KRC53786"/>
        <property type="gene ID" value="ASE19_06715"/>
    </dbReference>
    <dbReference type="OrthoDB" id="884088at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="13"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="318" mass="33162" checksum="939C1AF7CFFD88FB" modified="2016-01-20" version="1">MLAAFVEEFDPRDPLLALRVGERPEPTPPPGWTTIKVKAASINHHDVWSLRGVGISAESLPMILGCDAAGVTPDGEEVVVHAVVADPVGSKAPGRASVLSERHQGTFAETLVVPIANLVPKPAGLSFAEAACLPTAWLTAYNMLFRQADLSPGDTVLVQGASGGLSTALLSLGSAAGLRMWATGRTETGREHAVHSGAAAAFAPGERVPAKVDAVMESVGAATWEHSLKAVRPEGTVVVAGATSGYVAQTELARIFANRLRIVGTAMGSMPDFRRLLAFCDLQGVKPQIHASYPLSDARRAFAAVIDGDVNGKVVLQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V956</accession>
    <name>A0A0Q8V956_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11430</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895191.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53636">
        <property type="protein sequence ID" value="KRC53636"/>
        <property type="gene ID" value="ASE19_11430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1356861at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.225.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001303">
        <property type="entry name" value="Aldolase_II/adducin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036409">
        <property type="entry name" value="Aldolase_II/adducin_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013454">
        <property type="entry name" value="Bifunc_RhaD/ADH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00596">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SMART" id="SM01007">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53639">
        <property type="entry name" value="SSF53639"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02632">
        <property type="entry name" value="RhaD_aldol-ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldolase_II" evidence="2">
        <location>
            <begin position="8"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="683" mass="71574" checksum="1BCBB54D716F8FDD" modified="2016-01-20" version="1">MTNPAAAALIARSNRLGADPKNTNYAGGNTSAKGTETDPVTGEPVELLWVKGSGGDLGTLQESGLAVLRLDRMRSLVDVYPGVEREDEMVAAFDYCLHGKGGAAPSIDTAMHGLVDAAHVDHLHPDSGIAIATAADGEALTKEIYGDKVVWVPWRRPGFQLGLDIAEIKAQNPQSIGCILGGHGITAWGETSEEAEANSLWIIDTAAAHVAAHSKAEPFGPALDGYAALPDAERRARAAALAPTIRGIASADRPMVGHFTDADVVLDFLASSEHPRLAALGTSCPDHFLRTKVKPLVLDLPPSASVEDSIARLHELAVAYREDYQGYYDRNAVADSPAIRGKDPLIVLVPGVGMFSFGKDKQTARVAGEFYVNAINVMRGAEGLSTYAPIDEAEKFRIEYWALEEAKLQRMPKPKPLATRVAFVTGAASGIGKATAAKLAAEGACVVIADLSLEKAQEAASDIAGSLGSGADVAVGVQVDVSDEAAVQAAVDAAVLAFGGVDLVVNNAGLSLSRSLLETTEKDWDLQHDVMAKGSFLVAKATAKVMIEQQMGGDIVYISSKNSIFAGPNNVAYGAAKADQAHQVRLLAAELGEHGIKVNGVNPDGVVAGSGIFASGWGANRAAVYGVEEKDLGKFYAQRTILKREVLPENIANAVFVLCTDELSHTTGLHIPVDAGVAAAFLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9B8</accession>
    <name>A0A0Q8V9B8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha-amylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53850">
        <property type="protein sequence ID" value="KRC53850"/>
        <property type="gene ID" value="ASE19_07110"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006047">
        <property type="entry name" value="Glyco_hydro_13_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045857">
        <property type="entry name" value="O16G_dom_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00128">
        <property type="entry name" value="Alpha-amylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00642">
        <property type="entry name" value="Aamy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aamy" evidence="1">
        <location>
            <begin position="25"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="540" mass="59792" checksum="59559B5736EE7592" modified="2016-01-20" version="1">MDRHRPRGVPMSNTHKWWYDAVVYQVYVRSFADGEPVPGDGIGDLPGITARLPHLRDLGVDALWITPFYRSPQKDHGYDVADYEDVDPLFGELADFDALLARAHELGLRVIVDLVPNHTSDQHVWFRAALAAEPGSPERARYLFRDGRGPAGDEPPNNWSSVFGGSAWTRVADGQWYLHLFDSTQPDLDWRNPEVGDMFEGVLRFWLDRGVDGFRVDVAHGLYKEASLRDQVIPEETKGRKKQAESMVERVLRDEPMWEQPEVHDVYRRWRKVLEEYDGDRMAVAEAWTQTAESMAQFIRPDELHQAFNFGWLGTPWSAKDFAAVITSSIAAVATAAAAPTWVLSNHDVVRHPTRYGGGEVGLARGRAATLAMLALPGSAYLYQGEELGLEQVDVPPEARQDPSWFRTGQPGRDGCRVPLPWSGSAPPYGFGGADGTQPWIPQPTDWGGLTVEAQEADPDSTLAFYRRALATRRTVFTGAEEATTAEADGDLLVVRRAGVTVVVNTGDLPVPLPAGEVLISSTAVSDDGMLPPDTAVWLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA64</accession>
    <name>A0A0Q8VA64_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glycerol kinase</fullName>
            <ecNumber evidence="5">2.7.1.30</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">ATP:glycerol 3-phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Glycerokinase</fullName>
            <shortName evidence="5">GK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5 9" type="primary">glpK</name>
        <name evidence="9" type="ORF">ASE19_16030</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn-glycerol 3-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + glycerol = ADP + H(+) + sn-glycerol 3-phosphate</text>
            <dbReference type="Rhea" id="RHEA:21644"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17754"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.30"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="5">Inhibited by fructose 1,6-bisphosphate (FBP).</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Polyol metabolism; glycerol degradation via glycerol kinase pathway; sn-glycerol 3-phosphate from glycerol: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the FGGY kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.30" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893587.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50119">
        <property type="protein sequence ID" value="KRC50119"/>
        <property type="gene ID" value="ASE19_16030"/>
    </dbReference>
    <dbReference type="OrthoDB" id="233605at2"/>
    <dbReference type="UniPathway" id="UPA00618">
        <property type="reaction ID" value="UER00672"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004370">
        <property type="term" value="F:glycerol kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019563">
        <property type="term" value="P:glycerol catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006072">
        <property type="term" value="P:glycerol-3-phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00186">
        <property type="entry name" value="Glycerol_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000577">
        <property type="entry name" value="Carb_kinase_FGGY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018485">
        <property type="entry name" value="Carb_kinase_FGGY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018483">
        <property type="entry name" value="Carb_kinase_FGGY_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018484">
        <property type="entry name" value="Carb_kinase_FGGY_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005999">
        <property type="entry name" value="Glycerol_kin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02782">
        <property type="entry name" value="FGGY_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00370">
        <property type="entry name" value="FGGY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000538">
        <property type="entry name" value="GlpK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01311">
        <property type="entry name" value="glycerol_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00933">
        <property type="entry name" value="FGGY_KINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00445">
        <property type="entry name" value="FGGY_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0319">Glycerol metabolism</keyword>
    <keyword evidence="5 6 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="FGGY_N" evidence="7">
        <location>
            <begin position="8"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="domain" description="FGGY_C" evidence="8">
        <location>
            <begin position="268"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="85"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="252"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="15"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="274"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="318"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="322"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="337"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="419"/>
            <end position="423"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC50119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="508" mass="55248" checksum="D1C9803767F31069" modified="2016-01-20" version="1">MAAQARFVGAIDQGTTSTRFMVFDHQGREVVRHQLEHVQVLPRAGWVEHNPVEIWERTSAVVKTALGKARLEASDLAAIGITNQRETTIVWDRRTGRPLHNAIVWQDTRTDGIAAALDRDGRGDVIRHRAGLPPATYFSGGKLQWILDNVPGAREAAEKGEALFGTPDTWVLWNLTGGPDGGVHVTDVTNASRTMLMDLETLQWDDELLGFFGIPRAMLPEIRESSATTPFGTTLRSGPFGGEVPITGILGDQQAATVGQVCFAPGEAKNTYGTGNFMLLNTGTEIVRSKAGLLTTPAYQLGDQPCVYALEGSIAVTGSAVQWLRDQLGIISGAEESESLARQVDDNGGVYFVPAFSGLFAPYWRSDARGAIVGLSRFNTNAHVARATLEAICYQSRDVVEAMCADSGVELEVLKVDGGVTMNGLCMQIQADVLGVPVSRPVVPETTALGAAYAAGLSVGYWSSTDELRENWQEDTRWEPQWDDERRTAGYAQWKKAVQRTLDWVEVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA73</accession>
    <name>A0A0Q8VA73_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08785</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895570.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54138">
        <property type="protein sequence ID" value="KRC54138"/>
        <property type="gene ID" value="ASE19_08785"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="10"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="187" mass="20848" checksum="759DFF8D1C6EBBC7" modified="2016-01-20" version="1">MTERQVRRNEALRDSWFDAAHQILATEGYGGLKLAPLCKRLGVTTGSFYHSFDNWQDFTDSLLANWLRERTELLAEIARQDPDPIKRLQLLISNVVAFNHRAEAAIRVWAGVDDKVGAIQRKVDEGRYAAALEALEALVGPDLAPGFAVWGLSTAVGYELLSDAHPPERLQWALGRLLENVEAAAKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA78</accession>
    <name>A0A0Q8VA78_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">NDP-hexose 4-ketoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_07945</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895431.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53999">
        <property type="protein sequence ID" value="KRC53999"/>
        <property type="gene ID" value="ASE19_07945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="44062at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036628">
        <property type="entry name" value="Clp_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004176">
        <property type="entry name" value="Clp_R_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018368">
        <property type="entry name" value="ClpA/B_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041546">
        <property type="entry name" value="ClpA/ClpB_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001943">
        <property type="entry name" value="UVR_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17871">
        <property type="entry name" value="AAA_lid_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02861">
        <property type="entry name" value="Clp_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81923">
        <property type="entry name" value="SSF81923"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51903">
        <property type="entry name" value="CLP_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00870">
        <property type="entry name" value="CLPAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Clp R" evidence="8">
        <location>
            <begin position="2"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="UVR" evidence="7">
        <location>
            <begin position="426"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="827"/>
            <end position="855"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="855" mass="93638" checksum="3665C08FA80C253C" modified="2016-01-20" version="1">MFERFTDRARRVVVLAQEEARMLSHNYIGTEHILLGLIHEGEGVAAKALESLDISLEAVRAQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHSYIGTEHILLGLIREGEGVAAQVLQKLGADLNRVRQQVIQLLSGFQGKETGAAAAASGSTSGGDTPASSLVLDQFGRNLTQDAREGKLDPIIGRGAQIERVMQVLSRRTKNNPVLIGEPGVGKTSIVEGLAQDIVKGNVPETLKDKQIYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIVLFIDEIHTLVGAGAAEGAIDAASILKPMLARGELQTIGATTLDEYRKYLEKDAALERRFQPIQVPEPSIADTIEMLKGIRDRYEAHHRVTITDEALVSAATLADRYISDRFLPDKAIDLIDEAGSRLRIRRMTAPADLREYDDKIGEVRQRKEAAIDGQDFEAAARLRDEEKQLILAKSEREKQWRSGDMDEVAEVDEELIAEVLAVATGIPIVKLSEEESTRLLKMEDELHKRVIGQDEAVKALSRAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTWLSKTLAEFLFGDEDALIQLDMSEFGEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILEEGRLTDSQGRVVDFKNCVIIMTTNLGSRDIGKSVGLGFGGGDAAGSYDRMKAKVSDELKQHFRPEFLNRVDEIIVFPPLSQEQIISMVDNMIAGVEVRLKDRDMQLELTQKAKNLLAERGFDPVLGARPLRRTIQREIEDILAEKMLFGEVGPGQIVLVDVEGEGANATFTFAGQKVSALPDLPPLETVAEGGPSAPGEASPGEDGASDSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA91</accession>
    <name>A0A0Q8VA91_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pyridine nucleotide-disulfide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08885</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895588.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54156">
        <property type="protein sequence ID" value="KRC54156"/>
        <property type="gene ID" value="ASE19_08885"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1149616at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028202">
        <property type="entry name" value="Reductase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14759">
        <property type="entry name" value="Reductase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="6"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="domain" description="Reductase_C" evidence="2">
        <location>
            <begin position="328"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="412" mass="43780" checksum="01E69603A7827A47" modified="2016-01-20" version="1">MDPVRDLVVVGASLAGLRAVEAARRKGYDGRITLVGAEPHLPYDRPPLSKAFLDEGTTPEAPPFRSEEHLREELGVDLLLGTPATGLDASDRVLEAGDREVRYDRLIVATGAAARTLPGTEGVAGVHALRTLDDAVAIRTALDAGARTVVVGAGFIGSEVASGARKRGLPVTIVESLDVPLTRSVGPDAGRVCAELHRANGADLRLGRGVRELLVADGRAVGVLLDDGTRVDADLVVAGIGVVPSTGWLRDSGIALHERDGALLCDATLATSLPGVYGAGDVAYWPNPLFDDQLMRLEHWTNAAEHGAAAAAHALDPAAAVPVASVPYFWSDWYGHRIQFVGVPQADEVVVLAEEPYLALYRRGERVVGALTVDRPTQIMKLRKLVSQRASWTEAREFAEGLPAVRAPQRTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA94</accession>
    <name>A0A0Q8VA94_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">FHA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16210</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893619.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50151">
        <property type="protein sequence ID" value="KRC50151"/>
        <property type="gene ID" value="ASE19_16210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1632705at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026870">
        <property type="entry name" value="Zinc_ribbon_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13240">
        <property type="entry name" value="zinc_ribbon_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00240">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FHA" evidence="2">
        <location>
            <begin position="99"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="175" mass="18615" checksum="FC96E991E652F615" modified="2016-01-20" version="1">MPFCTACGRQNPDDARFCSQCGTRLVEPDATQTVPAVPTDATATIQFGAGATDRAETSDRALSAVDAAAVDALPVGHALLVVQKGPGAGSRFLLDADEVSAGRHPESGIFLDDVTVSRRHAVFRRAGDSFTVEDAGSLNGTYVNRDRIEKAHLKDSDEVQVGKYRLVFFAGHESH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAC3</accession>
    <name>A0A0Q8VAC3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Oxygen sensor histidine kinase NreB</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Nitrogen regulation protein B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_08235</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Member of the two-component regulatory system NreB/NreC involved in the control of dissimilatory nitrate/nitrite reduction in response to oxygen. NreB functions as a direct oxygen sensor histidine kinase which is autophosphorylated, in the absence of oxygen, probably at the conserved histidine residue, and transfers its phosphate group probably to a conserved aspartate residue of NreC. NreB/NreC activates the expression of the nitrate (narGHJI) and nitrite (nir) reductase operons, as well as the putative nitrate transporter gene narT.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895479.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54047">
        <property type="protein sequence ID" value="KRC54047"/>
        <property type="gene ID" value="ASE19_08235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1687028at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="61"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="95"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="138"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="12">
        <location>
            <begin position="303"/>
            <end position="387"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00030800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC54047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="387" mass="40532" checksum="E3EF3D5F1E935365" modified="2016-01-20" version="1">MARQDRQPWRLGPRGERWFDLGLTALLLLPVPLVMAFVSLTDGLLMLVQIAPLAWRRTHPVPVFVAVAATSALQSVLTDYPLWSQLAFPVAIYSVARYAGSAWAAGALTTGLVGAGIAAVDWLRGFDAVELTAQNVTAYFVTIALFVVVAWTLGTLGRTRQAYVDALVERGERLQREAAQQAALAAMEERHRIAREMHDVVAHSLTTIVVQADGAGAAAQQDPSVAVPALGTIASTGREAIAELRRMLGLLRSEDGDGTAPQPRLADLAGLLADVRAAGTPVVGHLAEPLPAVSDGVALTVFRIVQEALSNVRRHAGSGATATVSVHPDGDAIVVEVRDDGRGAAALDDGRGLGLTGMRERVAAHGGSLRTGAVAGGGFAVAARIPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAL6</accession>
    <name>A0A0Q8VAL6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08880</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895587.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54155">
        <property type="protein sequence ID" value="KRC54155"/>
        <property type="gene ID" value="ASE19_08880"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1261526at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="278" mass="28332" checksum="3C4DF21180763CA5" modified="2016-01-20" version="1">MTGRAAWEPRHALAGRTVVLSGGVHGIGGALAAGLGAAGANVVLLTKPVRSAVTSELVRAVDAVQEGGGECLVLAADLRDEDAVVRAVTQAVGHFGGIDACLNNASALTFAGTEAISVEAFDLMLQVNIRGAFVLTRACLPALRRSANPHVLTVSPPLNLAPRWLGAHPPYTLSKYGMTILALGWAAEFAGAGIASNCLWPERTISTGNVVHLLGDDAARFARSPAVMADAAVAVLATPAALVTGQCLLDVDVLRSVGIADLGRYGGDGPETDLFVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAL8</accession>
    <name>A0A0Q8VAL8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_08750</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895564.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54132">
        <property type="protein sequence ID" value="KRC54132"/>
        <property type="gene ID" value="ASE19_08750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="8"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="125"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="233"/>
            <end position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="385" mass="43014" checksum="86662A4E5033E944" modified="2016-01-20" version="1">MERTLYDEDHEAYRETVREFLTREVVPHKDQWDDDRWIPREVFKAAAEAGVYGLQIPEEHGGSGVTDYRYRLVVSEEVARANAISFGVTLGLQDDLFLAYLLGRADEEQKKRWLPRFAAGELIGALAMTEPGTGSDLQGIRTTARRDGDHWVVNGQKTFISSGIMADLIVLAVRTDPEGGSNGFSLLMVEADSTPGFERGRKLDKIGLPAQDTAELYFTDARVPAENLLGEEGQGLKYLMSHLPRERLGVVAQSITTARVTLDQTIAYLKDRTAFGKRLIDFQNTRFELAEMETELDVAQAYVDASVLAFNEGRLTPVEAAKGKWYVSELMKRVVDRCLQLHGGYGFMREYPVGKAYVDTRIQTIYGGTTEIMKEIIGRDIAGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAZ3</accession>
    <name>A0A0Q8VAZ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10325</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894736.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52803">
        <property type="protein sequence ID" value="KRC52803"/>
        <property type="gene ID" value="ASE19_10325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1791609at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025870">
        <property type="entry name" value="Glyoxalase-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13468">
        <property type="entry name" value="Glyoxalase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyoxalase-like_dom" evidence="1">
        <location>
            <begin position="3"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="212" mass="22491" checksum="AF44174C6B84888C" modified="2016-01-20" version="1">MRLDHLSYAAGPDGLASTAARLGSALGRDFTDGGVHPRFGTRNMILPLTDHTYIEVVEALDHPASDKAPFGQAVKARSALGGGWLGWAVAVPDISVVEQRLGRSAVPGSRHRPDGTELRWQQIGINGLIADPQLPFFLQWDVPADLHPSQGGDGTVSLAGIEIAGDPQRVSEWLGETVEAPLEDVKVEWVAPHGTPGILAAQVLTPNGIVRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCA2</accession>
    <name>A0A0Q8VCA2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_04475</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0126 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894341.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54740">
        <property type="protein sequence ID" value="KRC54740"/>
        <property type="gene ID" value="ASE19_04475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1665397at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005115">
        <property type="entry name" value="Gly_transporter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03458">
        <property type="entry name" value="Gly_transporter"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="29"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="61"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="87"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="117"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="Gly_transporter" evidence="8">
        <location>
            <begin position="4"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="Gly_transporter" evidence="8">
        <location>
            <begin position="90"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF03458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="200" mass="20550" checksum="17E3E35516DCB869" modified="2016-01-20" version="1">MLLTLDLVGIFVFAISGGLVAVRNQLDIVGVTVLAMATGLGGGVIRDVVIGAVPPPAVKDWWYLLVPVLGGLVTFYWHPAVGRLERVINVFDAFGLGLFCVAGALKAHEYGLGPVPGAALGMVTGVGGGIIRDLLVGRVPVIFRKGELYAIPALAGAAVASTGAELDVAAQVIVGPAAAVTIVWRLLALQRGWTAPVPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCW6</accession>
    <name>A0A0Q8VCW6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L29</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmC</name>
        <name evidence="7" type="ORF">ASE19_06545</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL29 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894491.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55086">
        <property type="protein sequence ID" value="KRC55086"/>
        <property type="gene ID" value="ASE19_06545"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2063644at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00374">
        <property type="entry name" value="Ribosomal_L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001854">
        <property type="entry name" value="Ribosomal_L29/L35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036049">
        <property type="entry name" value="Ribosomal_L29/L35_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018254">
        <property type="entry name" value="Ribosomal_L29_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00831">
        <property type="entry name" value="Ribosomal_L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46561">
        <property type="entry name" value="SSF46561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00012">
        <property type="entry name" value="L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00579">
        <property type="entry name" value="RIBOSOMAL_L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 7" id="KW-0689">Ribosomal protein</keyword>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="8"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="78" mass="8933" checksum="632140704181B65B" modified="2016-01-20" version="1">MANVIRAHELDELNAVDLESKLREAKEELFNLRFQAATGQLESHGRLRTVKKDIARIYTVVRERELGIRTAPGSEEEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDL2</accession>
    <name>A0A0Q8VDL2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Porphobilinogen deaminase</fullName>
            <shortName evidence="6">PBG</shortName>
            <ecNumber evidence="6">2.5.1.61</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Hydroxymethylbilane synthase</fullName>
            <shortName evidence="6">HMBS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Pre-uroporphyrinogen synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">hemC</name>
        <name evidence="10" type="ORF">ASE19_10205</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>H2O + 4 porphobilinogen = hydroxymethylbilane + 4 NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:13185"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57845"/>
            <dbReference type="ChEBI" id="CHEBI:58126"/>
            <dbReference type="EC" id="2.5.1.61"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>dipyrromethane</name>
            <dbReference type="ChEBI" id="CHEBI:60342"/>
        </cofactor>
        <text evidence="6">Binds 1 dipyrromethane group covalently.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Monomer.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="6">The porphobilinogen subunits are added to the dipyrromethane group.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the HMBS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.61" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894714.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52781">
        <property type="protein sequence ID" value="KRC52781"/>
        <property type="gene ID" value="ASE19_10205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1450400at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004418">
        <property type="term" value="F:hydroxymethylbilane synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018160">
        <property type="term" value="P:peptidyl-pyrromethane cofactor linkage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006779">
        <property type="term" value="P:porphyrin-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00260">
        <property type="entry name" value="Porphobil_deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000860">
        <property type="entry name" value="HemC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022419">
        <property type="entry name" value="Porphobilin_deaminase_cofac_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022417">
        <property type="entry name" value="Porphobilin_deaminase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022418">
        <property type="entry name" value="Porphobilinogen_deaminase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036803">
        <property type="entry name" value="Porphobilinogen_deaminase_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11557">
        <property type="entry name" value="PTHR11557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01379">
        <property type="entry name" value="Porphobil_deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03900">
        <property type="entry name" value="Porphobil_deamC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001438">
        <property type="entry name" value="4pyrrol_synth_OHMeBilane_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00151">
        <property type="entry name" value="PORPHBDMNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54782">
        <property type="entry name" value="SSF54782"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00212">
        <property type="entry name" value="hemC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00533">
        <property type="entry name" value="PORPHOBILINOGEN_DEAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Porphobil_deam" evidence="8">
        <location>
            <begin position="7"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="Porphobil_deamC" evidence="9">
        <location>
            <begin position="229"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="315"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="modified residue" description="S-(dipyrrolylmethanemethyl)cysteine" evidence="6">
        <location>
            <position position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00260"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC52781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="338" mass="34315" checksum="4B338DB1CB87E64E" modified="2016-01-20" version="1">MTAPTTLRIGTRRSALATTQSGHVATAITERTGVETVLVEITTDGDRSQAAGTPLTGAPSTGVFVSALRDALLAGEVDVAVHSLKDLPTYATEGIALAAVPVREDPRDVIVARDGLTLGELPPGSRLGTGSPRRVAQIEALGLGLEIAGVRGNVDTRIGKVRSGEFDAVVLARAGLARLERADEATEVLDPLQVLPAPGQGALAIECRADDAATLALLARLDDAGTRAAVSAERTVMARLEGGCAAPIGALAEIAEGDDGPEIWLRAVVLSEDGALSVRRSASAALGDDPADWPAAATTLGEALAAEMLEDGAAELVGPSLPGPASHPSARPAEVLNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEN1</accession>
    <name>A0A0Q8VEN1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08870</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895585.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54153">
        <property type="protein sequence ID" value="KRC54153"/>
        <property type="gene ID" value="ASE19_08870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1745184at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="10"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="196" mass="21984" checksum="99650818C7939C33" modified="2016-01-20" version="1">MARAVQTRTIDVQRRILDAAVEVMLEHGYSGASTVRIQERAGVSRGRLLHHFPSRDALLIAASQHLARARVGELPSDHSWPGDLGERIDAVVDTMAATFTQGYFWAATELWIAARTHEEIREALLPGEREIARAVRVAMDGFFGPELASRPGYEGLREVLFTSLRGMALTTSFDPREEPTRRHMERLKQLARTVLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEW0</accession>
    <name>A0A0Q8VEW0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Rieske domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_11835</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895003.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53073">
        <property type="protein sequence ID" value="KRC53073"/>
        <property type="gene ID" value="ASE19_11835"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015879">
        <property type="entry name" value="Ring_hydroxy_dOase_asu_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001663">
        <property type="entry name" value="Rng_hydr_dOase-A"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43756">
        <property type="entry name" value="PTHR43756"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00848">
        <property type="entry name" value="Ring_hydroxyl_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00090">
        <property type="entry name" value="RNGDIOXGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rieske" evidence="6">
        <location>
            <begin position="41"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="394" mass="44231" checksum="691F1B7340E8D4EF" modified="2016-01-20" version="1">MSVEARARRSPADEYTGPPARLFRGEEWFERDLAAIFHSNWLVAGHVDELDKHGKYGYITFRVGDAEVVVRRAKDGALRAYHNVCPHRGAQLCDGPSGDSRSRNVVCPYHQWTFDVSDGALLNSRHMHADFDSGSYGLRAAHVESWNGIIFVCFADTPPPSLAERLRGADAGGYDLSSMKLAATSSHAIAANWKIVVDNNMECYHCAVSHPELSELLDWQFIDDEESFDSFAAERAAGLDVFTFPFPVPQVSFGNKSVSKKALQRLDGQPAAQCRAIHWEPGIALVAAEDHAWLFVPVPIAPGATELRQYWFVHQDAVAGEDYDEETVKEFWNTTMLQDRDLCESVHRGMANPVYRSGPLNRRYQGYNAGFYRWYEQQMISKFPDLADEIAPLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF38</accession>
    <name>A0A0Q8VF38_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_12460</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895108.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53181">
        <property type="protein sequence ID" value="KRC53181"/>
        <property type="gene ID" value="ASE19_12460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="278483at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1730.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038377">
        <property type="entry name" value="Na/Glc_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001734">
        <property type="entry name" value="Na/solute_symporter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00474">
        <property type="entry name" value="SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50283">
        <property type="entry name" value="NA_SOLUT_SYMP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="47"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="117"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="155"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="185"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="224"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="270"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="322"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="371"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="398"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="424"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="465"/>
            <end position="485"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="505" mass="51708" checksum="9FC0CF75F83CD87E" modified="2016-01-20" version="1">MSTDAVPGLVAVLAVTVATVAIGTWGLRFSRTTSDFFVASRTVRPRLNASAIGGEYLSAASFLGIAGLLLVGGADMLWYPVGWTAGYLVLLVLVAAPLRRSGAYTLPDFAEARLGSGWVRAASSLLVVGVGWLYLVPQFKGAGITLESAIGAPAWVGPVIVGLVVLVNVMSGGMRSITFVQAFQYWLKLTAILLPAMVLVIVWWGDGSPGASALSSGPGWSDPVAGGGGIGLYSTYSLIIALFLGTMGLPHVVVRFYTNPDGRGARRTTLAVLALLGLFYVWPPVYAALGRVYGDQLVRDGHADVLVLELPRLMLHGFGGELLTGLVTAGAFAAFLSTASGLTIAVSGVLTQDVTTRLVGERASVATAFRLATAIAVVVPLLVALVVGEVGVAQSVGLAFAVAASTFCPLLVLGIWWRGLTDAGALAGLAAGGLGAGGAAVLNLAGVDAPGWTGALLAQPAAWSVPLAFAVMVTVSLATAGRAPAHARRFLVRLHTPETLGAGRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFB0</accession>
    <name>A0A0Q8VFB0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09665</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894628.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52690">
        <property type="protein sequence ID" value="KRC52690"/>
        <property type="gene ID" value="ASE19_09665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1984631at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359986" evidence="2">
        <location>
            <begin position="25"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="428" mass="45988" checksum="3A4E5DF0812A36B4" modified="2016-01-20" version="1">MIALLLGHVTTLALATAPAVPAAATTPAAPSTTSTDGPRLGDLMRPAGLPLPTGAARVTIGRTAPRWPDLRRTRWDVRSAFTHAGAPVPYRTLFDARTGQHLADRARGGEYDGTDASLKNIDVSFTITTRRFAIAYRGTRVQDVMVWLDDRPVRARPLFARSSTDTAYALNWIAIELPTRRTTRVRFAGPLNFVGVDVPAAQRAVVRAAAPRLTVGVVADSWFDRCAQAACRSRAAVPTLGTRTGWRVWNLAENGTGYLAASNGPTYGSFRPGPFGWSRRLAAVQRAPLDLLLVNGSINDAFAASYSPEAHLAAVDKYLDDLALIKPDLPVVLIGIEPLSLFRTGVWGDRSRAMNDALASMVGRHANVIAFIDPYTDPWLTGTGSISDPKGDGNQDRYIGTDGVHPGIAGVGYYVGRIVTALQDVRLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VFN4</accession>
    <name>A0A0Q8VFN4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Type II restriction endonuclease subunit M</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13585</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917970.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53376">
        <property type="protein sequence ID" value="KRC53376"/>
        <property type="gene ID" value="ASE19_13585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1178320at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003356">
        <property type="entry name" value="DNA_methylase_A-5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02384">
        <property type="entry name" value="N6_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N6_Mtase" evidence="1">
        <location>
            <begin position="572"/>
            <end position="700"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1041"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="1041" mass="113383" checksum="289A47FD21F7C07C" modified="2016-01-20" version="1" fragment="single">MARPKKNTTPRGTKTINAADQHRAWLELVDTEGPFLAIPPLKRVWPQGMPSLTNERKTALVDSRKDFEAAWESLDRSPDSETTQDSYRAARDKWVETVLRDVAGWAESLSWGEVPGVEAQSPNRAVTIRAQAALNGAGGIGAIVHVVDSVDSLRQTPGDLWAANPIDRVEVMLRENKIPIGIVTDGRWWGLVCVREGAMAASGIVDALTWTEETRTRDAFFALIGRQHLIGGDPTERLPILFEESVAAAEEITEALGAQVRRAVELLIQSFSESAADARRRGLPDPLPKRTHDSYEAAVTVMMRAVFLLFAEERGLLPSGELFEQGYGIAGELDRLISRETEESEEALDATSLTWHRLLATSQALYQGASFENLRMPAYGGSLFDAARFPFLTATNDQGTLAITVSDRVMLHVLRSVQVADIKGEARRISFRDIDVEQIGYIYEGLLGYTAAVATEVTVGLKGTLGEEPEIPLAKLEEFASEHSDPKKLAAAIRKFVEDDQPSAKPSSAAAIAKAISADVDPKVVSALTQAVGDDLELRDRVKPWLGVVRLDLRQRPFVVLAGGLLVKETPSRKNAGAHYTPKSLAEDVVLHALQPLCYSPGPHQTANGEEWKLKPSHELLSLKVADIACGSGAFLVAAARYLSERVVEAWTAEDPRNAARKDLYTRAIRQVVANCLYGADINDMAVEMCKLSLWLVSLDRDLPFSFVDDKVFLGNSLLGVTDLNQLRRLHIDPKVKTEMAGYYAYDVDIDSIIDRAKELRRTLLAEIDENDPARTSSAKRRQLADFRKVTADLRRIADGVVGAGLSQGGKPGRALNEAYDNLRIAVGKAYPDGGEADDTFLTSLIDSGLKPTVVTDYERWQPLHWVIEAPDVIIDNGGFDAIIGNPPFLGGQKLTGAMGTNVRDWFVNVVAEGRRGSADLVAYFFLRATSLLQRKGTLGLVATNTVAQGDTREVGLDALVAKGFTITRSVQSRTWPAASANLEYAAVWGTLGPVPDIVPRISDDVPVGGITTLLEPAGRATGNPIRLKENVGIGFQGCIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH68</accession>
    <name>A0A0Q8VH68_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_01990</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyltransferase 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892645.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56628">
        <property type="protein sequence ID" value="KRC56628"/>
        <property type="gene ID" value="ASE19_01990"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1064289at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd04188">
        <property type="entry name" value="DPG_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035518">
        <property type="entry name" value="DPG_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="3">
        <location>
            <begin position="4"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="237"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="285" mass="30304" checksum="07B4DC6D676F4D94" modified="2016-01-20" version="1">MLQIVIPAFNEERRLPRTLHALRRHVAEHRGVLGRVEVLVVDNASTDATAEVARAASTSAMPVRVVRCTRRGKGAAVRAGLLATEAELVCFMDADGATGLDALEAAWRRLLLGADVAIGSRAHADSDTEARHCRTRSKGAAAYRRLASRLVPGIADTQCGFKMFRGDLVREVVAGLRTSGFSFDVELLVRLRAAGAEVVEIPVTWVDVPGSTFDPVRHGAGAFAELARIAWSTRGLVPTPRTPQAQPGRAAGRGTRSPMPLPAVIALPAVVAVPVIAALPTRSPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH75</accession>
    <name>A0A0Q8VH75_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Translation factor Sua5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03245</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892855.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56837">
        <property type="protein sequence ID" value="KRC56837"/>
        <property type="gene ID" value="ASE19_03245"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1913202at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003725">
        <property type="term" value="F:double-stranded RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017945">
        <property type="entry name" value="DHBP_synth_RibB-like_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006070">
        <property type="entry name" value="YrdC-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01300">
        <property type="entry name" value="Sua5_yciO_yrdC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55821">
        <property type="entry name" value="SSF55821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00057">
        <property type="entry name" value="TIGR00057"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51163">
        <property type="entry name" value="YRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YrdC-like" evidence="1">
        <location>
            <begin position="15"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="223" mass="23220" checksum="530EBCAB37FE3F93" modified="2016-01-20" version="1">MTAERFPTETDEEREAALDAASQAVRRGRLVVLPTDTVYGVGADAFDPDAVSRLLAAKGRGREMPPPVLVGTKGTLEALATKVPAYVAPLVAEFWPGALTIVCHQQPSLQWDLGETRGTVAIRMPDHDLARALLDRTGPLAVTSANITGQPAAQDADEAIEMLGAAVDVVVDGGAAPGGVASTIIDATGERPRLLRAGAIPVEDIDAVLADLELTVETEPTDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHC6</accession>
    <name>A0A0Q8VHC6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 7">Transcriptional regulator MraZ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mraZ</name>
        <name evidence="10" type="ORF">ASE19_02410</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="7">Forms oligomers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
            <location evidence="7">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the MraZ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892717.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56699">
        <property type="protein sequence ID" value="KRC56699"/>
        <property type="gene ID" value="ASE19_02410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1684767at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009295">
        <property type="term" value="C:nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16321">
        <property type="entry name" value="MraZ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd16320">
        <property type="entry name" value="MraZ_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1550.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01008">
        <property type="entry name" value="MraZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003444">
        <property type="entry name" value="MraZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035644">
        <property type="entry name" value="MraZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020603">
        <property type="entry name" value="MraZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035642">
        <property type="entry name" value="MraZ_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038619">
        <property type="entry name" value="MraZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007159">
        <property type="entry name" value="SpoVT-AbrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037914">
        <property type="entry name" value="SpoVT-AbrB_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34701">
        <property type="entry name" value="PTHR34701"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02381">
        <property type="entry name" value="MraZ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89447">
        <property type="entry name" value="SSF89447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00242">
        <property type="entry name" value="TIGR00242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51740">
        <property type="entry name" value="SPOVT_ABRB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 7" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="SpoVT-AbrB" evidence="9">
        <location>
            <begin position="6"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="domain" description="SpoVT-AbrB" evidence="9">
        <location>
            <begin position="77"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51740"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC56699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="140" mass="15998" checksum="46ECD762BB32E003" modified="2016-01-20" version="1">MLFMGTYTPKLDDKGRLFLPAKFRDRLAEGLVVTQGQDKCLVVWPTDVFAEEAERQAARPMTNRAARRYARVLFAGGDESTPDKQGRIGIPGHLREYAGLERDVVVIGVRDRLEIWNPTAWREFQLEALEEFADLDEDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHF9</accession>
    <name>A0A0Q8VHF9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03810</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892955.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56938">
        <property type="protein sequence ID" value="KRC56938"/>
        <property type="gene ID" value="ASE19_03810"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1220078at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="36"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="390"/>
            <end position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="451" mass="47692" checksum="C67C8430F591C82D" modified="2016-01-20" version="1">MNAFTDVGRAGLVVVLIAAGVTGVAWQMGGDDDSELVRAHFASAAPLVEGNQVKIDGVVVGSVKSLEVDHGLAEVSLELDEEARPLHQDARLTIRPVSLLGERYVDLDRGSPDAPLLDEGTVIPVEQTATSVGLDEVLNTVDEPTGDGLRALVSTLGQGMQGNGKNIDEALEVLSPSLKDAQAMAAVLDEHNELLARLIDSFEPVASALATRDGKAMDQLVDSSDKVLTAVRERQVKLEQTLQKLPGTLTVLRTTLANLRNAADDTAPTLEELRPLTDKLPELSEELRAFSDVLDPALASSEPVLRKADALLRAAAPVARDVRRAGGGLATSTTGVQRLTGALTRNRDNLFNYIRFWALTTNGHDGLSHYFRAHYVVDPDTVLGLLPVTKKPQASAPRGSTPAKPGKDTTPGLLEGLGDVLGGLLQPKGDSATGLSKQQELNLLGLLLGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHI9</accession>
    <name>A0A0Q8VHI9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03535</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892905.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56888">
        <property type="protein sequence ID" value="KRC56888"/>
        <property type="gene ID" value="ASE19_03535"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1940689at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="15939" checksum="6768FDEFB852BA67" modified="2016-01-20" version="1">MEINGVPLHPLVVHAAVVFTPLASLAALVYCVPSWRDRLRWPLVVLAAISLVSIWVAFLSGEDLRDEQFTGVVEPLAGKIEDHEEWAEKLRIGVTVFAVVAFVAAWFHTRTGAVRVALGALTALAAVATLVLVYLTGDAGAQATWNPAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHP0</accession>
    <name>A0A0Q8VHP0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03235</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892854.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56836">
        <property type="protein sequence ID" value="KRC56836"/>
        <property type="gene ID" value="ASE19_03235"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2001030at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="148" mass="15074" checksum="8E79B0E32E776D92" modified="2016-01-20" version="1">MMTTDTRTHRVVTRAALVAAVAAAGLVLVAALVSGESAALGAAVGGVIAVGVFAFGSFAVEAVARLMPAASLLFAMVTYTFQVAAMALVFVALNTSGLLDDEIDSTWVGIAIIVGAFVWMTVQILLATTARIPAFETVPSTRSEGGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHT9</accession>
    <name>A0A0Q8VHT9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF58 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03595</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892917.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56900">
        <property type="protein sequence ID" value="KRC56900"/>
        <property type="gene ID" value="ASE19_03595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="848990at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002881">
        <property type="entry name" value="DUF58"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01882">
        <property type="entry name" value="DUF58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="domain" description="DUF58" evidence="2">
        <location>
            <begin position="234"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="428" mass="46471" checksum="ACF8742FC45DBF56" modified="2016-01-20" version="1">MKDPRSWASGLRRTLTDLSRRRQAVTGSLRDKVGTRTQRLRSALAPVTETVTPAGWVVALLAIALVVAGPALHWGELVVGGVFLLVVLLLAVLFVVGRQPLSARLDLARDRVIVGERANGYLTLSNPTGRRSRPLVVEFPVGAGKAAFDLPALAPGAMHEELFAIPTAHRAVLDVGPVIAVRSDPLGLLRRERRLSDLDMLYVHPKTLRVEGSAAGLVRDLEGRTVPKVSDNDVSFHALRGYVPGDDRRHIHWKSSAKTGTLMVRQFEETRRSHLLTMVSSRLEDYATDDEFELAISVAGSLGTQAIMDGQRLSAVASHASIPATSNQRFLDGLSGLTYDWKARHLVDVARHLSVDELAASVVVLCVGSGVSITELRKARQYLPVDMRVIAVRCLVGHEPSVRWLGDLGVATVGRLEELGIAVRRVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHW1</accession>
    <name>A0A0Q8VHW1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">STAS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03160</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892841.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56822">
        <property type="protein sequence ID" value="KRC56822"/>
        <property type="gene ID" value="ASE19_03160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1958051at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.24">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002645">
        <property type="entry name" value="STAS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036513">
        <property type="entry name" value="STAS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13466">
        <property type="entry name" value="STAS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52091">
        <property type="entry name" value="SSF52091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50801">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="STAS" evidence="1">
        <location>
            <begin position="6"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="115" mass="12454" checksum="E001691D28A9F0CA" modified="2016-01-20" version="1">MSATISTISTDLRETGAVLVLGGDLDVRSTAELRNALYEHLRVHGSYTDGRVLVDISEVTSVDATALKVVAAASRRARRRGGSVVLRGACPAVRRMLHLTHLIRLVELEREPIPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHZ6</accession>
    <name>A0A0Q8VHZ6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03815</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892956.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56939">
        <property type="protein sequence ID" value="KRC56939"/>
        <property type="gene ID" value="ASE19_03815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="27"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="378"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="411" mass="42844" checksum="82C2C48F09BB5D28" modified="2016-01-20" version="1">MAAGGIAVGVLGLALVGGSVVALDQTDGYHVSAVLPNAGNVFVGSSVMYDGYEAGSVTDIDVQDGKALVRLSLDDEFGPLHDGATVEVVWKAALGERLVRVVDGPDENAELPEGAMLAGVQREPVELDAVLSALDAPTRQRLSSLVSRLQQTLAGKEDQANASLQAAGPALAELGSVLREVGTDGEAIKQIVTQFDETMRILASRGDSLEQVVSSLASATDTIAAQERNVGSTLQKLPPVLEKANTTLARVPGTVDKTLPLLEDLAPATDSLQSVSRNLEPLLQDLRPTVGDLRPTLDRLSQLLGITPGLLDGSTATAPDADDALTGLTPALDFLRPYTPEITGWATNWGSAAGNRDNQGHYTRFLIQAGLESVIPSPTGKPAPGITQNLTPDPGAPVGQPWTDAYGSEMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI38</accession>
    <name>A0A0Q8VI38_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cell filamentation protein Fic</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04220</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893029.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57012">
        <property type="protein sequence ID" value="KRC57012"/>
        <property type="gene ID" value="ASE19_04220"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1232677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003812">
        <property type="entry name" value="Fido"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036597">
        <property type="entry name" value="Fido-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02661">
        <property type="entry name" value="Fic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140931">
        <property type="entry name" value="SSF140931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51459">
        <property type="entry name" value="FIDO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fido" evidence="1">
        <location>
            <begin position="66"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="215" mass="23989" checksum="671848BF0069B548" modified="2016-01-20" version="1">MIPPRPWEVGDHEARWNGYLLAPGSPVLRNKVGATTTEALRAAENDLLEFRLTELRSQRGLVSRTYDLAHLQRLHLQLFQDVYEWAGDLRTVGIAKGEGEDTSFVPPLDIERPVAHVAARIAESHLLRDVGADELVDEVTYLYDYLNFAHPFREGNGRAQREFFAQLLAESGRGLDWSKADMDGLHSACHAARVDGDTSALRTIIAVALTVDPVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI73</accession>
    <name>A0A0Q8VI73_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_08140</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895464.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54032">
        <property type="protein sequence ID" value="KRC54032"/>
        <property type="gene ID" value="ASE19_08140"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1294334at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="274" mass="28331" checksum="4C84223FE89E71C2" modified="2016-01-20" version="1">MSILDRFTLTDHVAVVTGAGRGIGAATAVALAEAGADVLISSRTEAQLTDVAARIEAAGRRAVVVPANLAHTDEVAGLAQAAYDAFGRLDIVVNNVGGTIPNAFLDTDVAYLEESFHFNVATAHALSRAAVPLMLASAGEGRQKSITSISSMMGRTAARGYLAYGVAKAALAHWTRLAATDLAPSVRVNGVYVGSVMTSALEFVAGVPAMKQQMEESTPLGRIGEAEDIAAAVVYLSSRAGQFVTGKLLEVDGGIQQPNLDLGLPDLQPEMNAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIE7</accession>
    <name>A0A0Q8VIE7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08630</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54113">
        <property type="protein sequence ID" value="KRC54113"/>
        <property type="gene ID" value="ASE19_08630"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030296">
        <property type="entry name" value="MlaF/Mkl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43023:SF6">
        <property type="entry name" value="PTHR43023:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="1">
        <location>
            <begin position="34"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="67" mass="6968" checksum="860E491B38AD3A10" modified="2016-01-20" version="1" fragment="single">MAGSRPGRNEVRAMGVDVAVTNLTKQFGKQLIWKGVSLTLPAGEISVMLGPSGTGKSVFLKALIGLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIY2</accession>
    <name>A0A0Q8VIY2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">3-hydroxyisobutyrate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_06980</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895257.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53826">
        <property type="protein sequence ID" value="KRC53826"/>
        <property type="gene ID" value="ASE19_06980"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1194694at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016054">
        <property type="term" value="P:organic acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015815">
        <property type="entry name" value="HIBADH-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029154">
        <property type="entry name" value="NADP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14833">
        <property type="entry name" value="NAD_binding_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000103">
        <property type="entry name" value="HIBADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_2" evidence="2">
        <location>
            <begin position="5"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="domain" description="NAD_binding_11" evidence="3">
        <location>
            <begin position="155"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000103-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="269" mass="27353" checksum="989C2FF1E4B44292" modified="2016-01-20" version="1">MRNVKVGFVGLGNIGRPMALRLAATEGIDLQVYDVAPDPVAELVAAGATAVGTVAELDVDVVCVMVRDDAQVRAVAADVPKDRVLVVHSTVAPETPAELTAAGHRVLDAPVSGGPMGAAEGSLAIMVGGAADAFDAARPALEAMGTKVVHAGPVGAGTRMKLARNLIHFVAFTAVTEAQRLAEAAGLDLAALGEVVRHTDAITGGPGAIMYRTTTAPIAPDDFWHGVFSHVAALGEKDLGFAIALADELGVDVPLAREALPRLGKGLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJE7</accession>
    <name>A0A0Q8VJE7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Alpha-L-glutamate ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_12915</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895717.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53255">
        <property type="protein sequence ID" value="KRC53255"/>
        <property type="gene ID" value="ASE19_12915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="937913at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013651">
        <property type="entry name" value="ATP-grasp_RimK-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041107">
        <property type="entry name" value="Rimk_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004666">
        <property type="entry name" value="RpS6_RimK/Lys_biosynth_LsyX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08443">
        <property type="entry name" value="RimK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18030">
        <property type="entry name" value="Rimk_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02080">
        <property type="entry name" value="TrkA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00768">
        <property type="entry name" value="rimK_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0436">Ligase</keyword>
    <keyword evidence="7" id="KW-0464">Manganese</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="9">
        <location>
            <begin position="104"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="10">
        <location>
            <begin position="296"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC53255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="395" mass="43427" checksum="02F5857E1B6F7D20" modified="2016-01-20" version="1">MKLAILSRAPRSYSTQRLRTAALDRGHQVKVLNTLRFAIDLSGDLPDLQFRGKQLSDYDAILPRIGNSITYFGTAVVRQFEQMDVYTPNTANGISNSRDKLRASQILSRHNISMPATTFVRDRADVIPAIERVGGAPVVIKLLEGTQGIGVILAPSIKVAEAIIETLQSTKQQVLIQRFVKESRGRDLRALVVGDRVVAAMRRVAQGDEFRSNVHRGGSVEPVELDAEAERIAVRAAQIMGLKVAGVDMLEADDGPQVMEVNSSPGLEGIENATKLDVAGAIIDYIDNQVAFPQIDVRERLSVSTGYGVAELLVHADADLVGKSLGDSGLRDRDITVLTLHRGTMVIPNPFPHHVLEAEDRLLCFGKLEEMRSMIPARRKRTRVKKLPKQPIHTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJG3</accession>
    <name>A0A0Q8VJG3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07880</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895417.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53986">
        <property type="protein sequence ID" value="KRC53986"/>
        <property type="gene ID" value="ASE19_07880"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="130" mass="14239" checksum="E57C3CB8EC715D7A" modified="2016-01-20" version="1">MTRIEVAFPVPADRAYAYLADPRNRPQWQSSLRGVADVAPDLDTWTDVTVVPGVRPRMRTTLAEPPYRWAEEGTCGPFRARLELAFVPDGDGCRVTADFIVRGAGLGRLVTWGSRAAVAADLRRAARLSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJN9</accession>
    <name>A0A0Q8VJN9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cell division protein FtsI</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13355</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895797.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53335">
        <property type="protein sequence ID" value="KRC53335"/>
        <property type="gene ID" value="ASE19_13355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="423699at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2" id="KW-0132">Cell division</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transpeptidase" evidence="1">
        <location>
            <begin position="159"/>
            <end position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="503" mass="53994" checksum="9B203312DF30AAFB" modified="2016-01-20" version="1">MNKPIRAVSIFCMFLFLALMANVTYLQFFRSDDYNTDPRNARVAAAAFSRERGLIQVGDNAIARSEPVDDQYKYLRVYPQKELYAPVTGYLQLGSQTGIERSQNKVLSGEDPRLFVNRLVDLLKGDTNQGGNVSLTLNPKAQRAAYRALRDTVGPDGEGSVVAIEPKTGRILAMVSFPTYDPNQLASHDRETRENAYDRLDSNKHQPLLNRAIQTRLFPGSTFKVVTAAAAIDAGVYDQDSQVPSGATWQAPGTSGSHNVIDNEGRSGCSPTTISFAAAMENSCNTAFAKMAVKVGPEKLRDTAEAFGFNTDYLQDLGPQAQSVFPKSVVDTIDGKQQDPRELNDAETARSGFGQFSVQATPLQMAMVVSAIANRGGLMKPYLVDEIQTASFDVLETTEPEKLRDAIKPQTAAALTDLLVSTVDDGTASPAAIDGVSVAGKTGTAQRGVEGKPPYGWFVSFAPAQNAQVAVAVMIQEAPGKEIAGGQLGGPIAKAVMEAVLNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJV7</accession>
    <name>A0A0Q8VJV7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pyridine nucleotide-disulfide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08635</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895546.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54114">
        <property type="protein sequence ID" value="KRC54114"/>
        <property type="gene ID" value="ASE19_08635"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1149616at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028202">
        <property type="entry name" value="Reductase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14759">
        <property type="entry name" value="Reductase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="6"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="Reductase_C" evidence="2">
        <location>
            <begin position="327"/>
            <end position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="418" mass="44239" checksum="EA9DF0874CD1E641" modified="2016-01-20" version="1">MTEVRRLVVVGASLAGLRAVEAARKTGYDGEIVLIGAEEHLPYDRPPLSKAFLGAADESGALPEVPWFRTEETLRDELGVDVRLGAPATALDTDARLVTVGDDAIAYDALVIATGAHARVLPGTEGLDGVYPLRTLDDSLAVRDKLEAGARTVVIGAGFIGSEIASTARKRGLEATIVEALPTPLVRATGHEMGAAIASLHELNGTTLRCGVGVSAIEGDGKVERVVLADGSAIDADLVVVGIGVIPSVDWLAGSGLTLDNGIVCDENLWTGIPGVYAAGDVANWFNPTLGERQRMENWTAAAEQGAAAARNALDPDNAKAYGTVPYFWSDWYDVRIQFVGSPDADEVRLVDGDPASGGRWVALYRRGDRLIGALTVNGQTEIMKYRVQIMKGGSWDDALAFAETRRRAHEEKLAASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VL80</accession>
    <name>A0A0Q8VL80_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07010</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895262.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53831">
        <property type="protein sequence ID" value="KRC53831"/>
        <property type="gene ID" value="ASE19_07010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1261526at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="258" mass="26787" checksum="A6708621FEB2D57F" modified="2016-01-20" version="1">MPKPVHPDRRPAVVAGASSGIGAETARALAAAGFPVALGARRVDKLDELAAEIREAGGEAFVHALDVASTESVDKFAAAVSAGLGEAEVVVCNAGLLAPGGLLDATTEQLAAEFDVNVLGAHRLVRAFGAGMVERQRGDLVFVSSDTALRARPFMRGYSATKSGLEGLVEALQMELEGTGVRASVVRPGPTWSEMGSDWDADAGAKVLTEWIKWGHARHSHFLKATAIADAIVTVVSAPRGVHISPVDVNPEAPLEQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLB3</accession>
    <name>A0A0Q8VLB3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_05905</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894098.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54976">
        <property type="protein sequence ID" value="KRC54976"/>
        <property type="gene ID" value="ASE19_05905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1251907at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360150" evidence="3">
        <location>
            <begin position="30"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="399"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="304"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="314"/>
            <end position="356"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="426" mass="43933" checksum="1B237F5C99973C84" modified="2016-01-20" version="1">MRARWLLPALAALLTLTVAPLVPVAPAVAEDGDTTAFTVADAVFRWGINDESNNNAFAPGTYNFPSAGRAPDPGSGGQVLDDRGRWPSTGATAWQASAGEVRIEKITSSGPVPTTYAGTRTGPDGQSLGGPTVEVFSNHQVVISGGTGEVDPAAGTATIRWEGSFTVFYYSGMTFFTITDPVLEVTPTSARITASGSGYASSMEDTTTWQAVPATPVTLAALTGVGTDELAAEKGFTAETAYLGVRYDAPAGGTTQVRTGSTWGAVPASLLAFLEKVGMASYWYSSGGSGDRFKVTKPVTVSWDARTAIEPEPPTETPTTPTGTPSNPAGEEPPASTPSTAPPAVVRPPGPALPAQAPAPVASTATAQPASYQPPVAYALASSPADPDRSDRSGRPWEWALGFLLLLGAVGITLFDPLMNRLKGTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLZ0</accession>
    <name>A0A0Q8VLZ0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cro/Cl family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04455</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894343.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54738">
        <property type="protein sequence ID" value="KRC54738"/>
        <property type="gene ID" value="ASE19_04455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1831955at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="22"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="156" mass="17305" checksum="7EE6F75EDE918191" modified="2016-01-20" version="1">MTLLGEYLGAQRDEDVARLRRVLALRALATGMSQRQIAEALGITQPAVSQQLKFARHLGEVHPEVLLDAGAPILRSLAEEHGYSRLAVFGSVARRQAREDSDIDLIVEAPAKVSSFDFIRFRQLLEKVLGREIDLVEYGGLKSGLDDDIRREAVLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMH4</accession>
    <name>A0A0Q8VMH4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Phosphate transport system permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_07525</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54199">
        <property type="protein sequence ID" value="KRC54199"/>
        <property type="gene ID" value="ASE19_07525"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011864">
        <property type="entry name" value="Phosphate_PstC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02138">
        <property type="entry name" value="phosphate_pstC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="64"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="109"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="166"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="223"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="280"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="10">
        <location>
            <begin position="72"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC54199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="315" mass="33518" checksum="02D58F34D869D2E6" modified="2016-01-20" version="1">MEDQPADWASVRGGIGDRIFSGAALAAGLTILAALAGVFIFLLAKGATGFSKPAGVYGPHAESFLGYVFPLLVGTFTASIIALIIAVPLAFGIALVISHYAPKWLSAPVAFVIDLLAAVPSVVYGLWGAFFLAKKLVPMHDWLHATFGGWPILGALFGEPSTAGRTVLTAGIVLAIMILPIITAITREVFSRTPRLHEEAALALGATRWEMIRMTVFPYSRSGMVSAVMLGLGRALGETMAVTMVLSVGFDLSWNIIAQSSPTSIAANVALKYKERSADLLNVLVATGLVLFLLTFLVNFAARWVIGRSERRMAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VML4</accession>
    <name>A0A0Q8VML4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_03350</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892874.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56857">
        <property type="protein sequence ID" value="KRC56857"/>
        <property type="gene ID" value="ASE19_03350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1570162at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025996">
        <property type="entry name" value="TetR_C_WHG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13305">
        <property type="entry name" value="TetR_C_33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="5">
        <location>
            <begin position="15"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC56857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="217" mass="23082" checksum="B0845506F9E2A730" modified="2016-01-20" version="1">MSPVNDASRSRYHHGDLRNALARAAAELATTGGPDAVTIRGAAREVGVTPTAAYRHFANQSDLLEAARALAMDGMAAAMADFLQRVPEDADPVARAIDRLESTGRGYIRFALDEPGIFRTCFTGQLRAPSEPVPTDPDPYVLLGTMLDELVAVGYLAPEDRPGAEAGPWAAVHGLAMLLIDGPLKDMPDAEREAAIDRTLEMTTRGLATGPAARPKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VND4</accession>
    <name>A0A0Q8VND4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Diacylglycerol O-acyltransferase</fullName>
            <ecNumber evidence="5 11">2.3.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">ASE19_23150</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>a 1,2-diacyl-sn-glycerol + an acyl-CoA = a triacyl-sn-glycerol + CoA</text>
            <dbReference type="Rhea" id="RHEA:10868"/>
            <dbReference type="ChEBI" id="CHEBI:17815"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="ChEBI" id="CHEBI:64615"/>
            <dbReference type="EC" id="2.3.1.20"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Glycerolipid metabolism; triacylglycerol biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the long-chain O-acyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.20" evidence="5 11"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892530.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58956">
        <property type="protein sequence ID" value="KRC58956"/>
        <property type="gene ID" value="ASE19_23150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="279287at2"/>
    <dbReference type="UniPathway" id="UPA00282"/>
    <dbReference type="UniPathway" id="UPA00556"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004144">
        <property type="term" value="F:diacylglycerol O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019432">
        <property type="term" value="P:triglyceride biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014292">
        <property type="entry name" value="Acyl_transf_WS/DGAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045034">
        <property type="entry name" value="O-acyltransferase_WSD1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009721">
        <property type="entry name" value="O-acyltransferase_WSD1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004255">
        <property type="entry name" value="O-acyltransferase_WSD1_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31650">
        <property type="entry name" value="PTHR31650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03007">
        <property type="entry name" value="WES_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06974">
        <property type="entry name" value="WS_DGAT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02946">
        <property type="entry name" value="acyl_WS_DGAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11 14" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8 11" id="KW-0319">Glycerol metabolism</keyword>
    <keyword evidence="6 11" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="9 11" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11 14" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="WES_acyltransf" evidence="12">
        <location>
            <begin position="4"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="domain" description="WS_DGAT_C" evidence="13">
        <location>
            <begin position="312"/>
            <end position="461"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU361241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF03007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF06974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC58956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="469" mass="50800" checksum="0C7B88955D6D0178" modified="2016-01-20" version="1">MDRLSGLDASFLYLETPAQLMHVCAVMVLDPETMTSPYSFDAIQARIGESVHDVPGFTRKIRGVPLGLDHPVWVRDRNFDIERHVHRLALPTPGGYAELMDLCAHLASLPLDRSRPLWEMWVIEGYRPEGEDAEKVVVFAKMHHATVDGVSGANLISHLCSIEPGAAPLVPTEQRHPRDPGRGELLGRAVIGTAARPVTLVKVLKPSAQLITKSIGRARQGTAMAAPFSAPRTSFNGTITSHRSIAMADLDLDEIRRIKKATGTTVNDVVLAVAGGALRAYLAERDELPTSSLLATVPVSVRDSSRRSSGANKVSALFTKLGTDIGDPLDRLRMLAERNQHAKEHHNAISADALQDWAEFAAPRTFGLAVRTYANLRLAERHPVVHNLVISNVPGPPIPLYFMGARIEALCPLGPVFHGAGLNVTVMSNAGRMHVGAIACRESMPDTDALVRHFPAELERLTAAVDALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VNN4</accession>
    <name>A0A0Q8VNN4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892582.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58902">
        <property type="protein sequence ID" value="KRC58902"/>
        <property type="gene ID" value="ASE19_22835"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1920912at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008703">
        <property type="term" value="F:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002734">
        <property type="entry name" value="RibDG_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01872">
        <property type="entry name" value="RibD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="SSF53597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RibD_C" evidence="1">
        <location>
            <begin position="2"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="191" mass="21162" checksum="F7D612C696642A24" modified="2016-01-20" version="1">MRTLIYTAFVSLDGVVQAPAPEADYPNGGWTFQGIDFLADVYELKGREQQEASALMLGRVSYQAFAPVWPKMTEEFPRYNAMPKYVVSTTLGDDDLVDNWGDTTILRSFDDVAALKETEGGPISIHGSASLARGLSDAGLLDRYHLLVFPWVLGAGKRMWSETAKDRQKLELVESQAYANGVQKLCYSVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VP02</accession>
    <name>A0A0Q8VP02_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Peptidase S8</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_23770</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893987.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57353">
        <property type="protein sequence ID" value="KRC57353"/>
        <property type="gene ID" value="ASE19_23770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="923655at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023827">
        <property type="entry name" value="Peptidase_S8_Asp-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022398">
        <property type="entry name" value="Peptidase_S8_His-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015500">
        <property type="entry name" value="Peptidase_S8_subtilisin-rel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00723">
        <property type="entry name" value="SUBTILISIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="SSF52743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00136">
        <property type="entry name" value="SUBTILASE_ASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00137">
        <property type="entry name" value="SUBTILASE_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0720">Serine protease</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360229" evidence="7">
        <location>
            <begin position="34"/>
            <end position="510"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S8" evidence="8">
        <location>
            <begin position="190"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="125"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="342"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="146"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003355"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC57353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="510" mass="52787" checksum="D759A0CA23451478" modified="2016-01-20" version="1">MPQHHRRFRAAVLTVATGLTLAGLSVSGTGATAAPAAGGEPVSTPVPISTPDGVVSAYLLNAKQANPGQTRLLERAVARAGGVVVQTWPQIGVVVAHSDRAAFRANVKVYAGNALESVGATRTVPVTEGTPEGVQAPWGPGRGQVRKAQSSPQQDDTENTVTAADPRESEQWDLQVIKADQAHAITDGSRDVVVGVLDSGIDPDHPDLAANIDVADSVNCSDAGRPDTSATGWYPTTSDHGTHVAGTIGAARNGVGIVGVAPNVRMAAVKVVNDDGFIYPEYAVCGFVWAGTHGMDVTNNSYYVDPFEFYCEDQPDQYAAKEAVRRAVAWSTDQGVVHAAAAGNSGHDLSDKSSFLDEGSPDDGTPVTRTLNSGCQDIPTELPGVVTVSASHRDDILAYFSNRGLGVIDVAAPGRRILSTIVTGNGYGLKSGTSMASPHVAGVLALMRSAHPDLTPAQMVAKLRADADDHACTVQEAPPAGVDLGAPCVGTDADNSYYGEGMVDALDAVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPW2</accession>
    <name>A0A0Q8VPW2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aminoglycoside phosphotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00125</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896854.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59486">
        <property type="protein sequence ID" value="KRC59486"/>
        <property type="gene ID" value="ASE19_00125"/>
    </dbReference>
    <dbReference type="OrthoDB" id="955338at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="329" mass="35881" checksum="C5B9E3936EEBD2C3" modified="2016-01-20" version="1">MPEVLESVDALLAGASDRHVLEAPGKSGAVLECVTIDGRRYVVKYLDHERDWSLRAAGVPGSPTVELWRRGILHRLPAEIAQPIVAVAHDRERPALSALLMHDIGSDLVPAVDDPITVEQNARFLDHLAALHAAFWETAEDIDVVPAVDRYLELSPRMAAAEAALGQDHLVPRLVAQGWPLLESVAPRAAAVVVPLVHEPGPLLDVLASTPQTFVHGNWKLDNLGTDATGRTLLLDWETPGRGAGTADLAWYLAINCRRLPVSKEASAELYRAALERRGLDTGPWWDRQLALGLLGALVQFGWEKALGGYDDELAWWEERAVAAAPLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ10</accession>
    <name>A0A0Q8VQ10_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_00155</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59492">
        <property type="protein sequence ID" value="KRC59492"/>
        <property type="gene ID" value="ASE19_00155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1412319at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019238">
        <property type="entry name" value="AbiEi_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09952">
        <property type="entry name" value="AbiEi_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="330" mass="36718" checksum="FE08A3811E70030E" modified="2016-01-20" version="1">MIVSPYAPVAHRIEELGIRISTGRVHTSTSRVGELDATLARGRSHQAYHVAHGDRVALSDITRVTGKSDAPLLVWSIVIPPRTAEAYRRMGVQYADAAGNAWLEFGDVLIDIRGRRPVEEMHPRPLDKRSTNLFSAGRSKVIFALLTWPHLWEASKRELAHVAGVSVGLAHDSITLLEQSGYGKYSRMSRNHGLLDPWAAAYATALAPQITLGSYRGDFGAVVTTRESGEVLVSGESAAKDLIRPTTLTLYVEQPDPRLPVANRWRADGEPTIFVRRRFWHAPDERQDHPPGLGLRDAPWTIVYADLVSNDDPRLQNVAREWRDRHADPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ24</accession>
    <name>A0A0Q8VQ24_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_23465</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57721">
        <property type="protein sequence ID" value="KRC57721"/>
        <property type="gene ID" value="ASE19_23465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="110"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="HisKA_3" evidence="2">
        <location>
            <begin position="192"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="372" mass="40101" checksum="FDCD99D22BC7779F" modified="2016-01-20" version="1">MATVESPGQVEPPRALGRLGPMFAAIWLAFLLDPVRAAWSDLPALHAWCGLVATLVFAATYLALWVAMRSDRARLVQLPPLRVRLAWTAVLSGLAVVMVAALGQVGTASVVYLAVTVVMLYPPVVFLPVVAALATGVLVTGITMPGWEHSPWLAFSIIAASLAVFGVRSMMNRNIELIRAHETSAELAAEQERTRLARDLHDILGHSLTVITIKAELAGRLLDVDTERTRAELADLERLSRDALADVRRAVEGYRELTLPGELARARTALEAAEIEASLPNSTDDVPTELRELFAWTIREGVTNVIRHSGARRCEVLLAPDRAEVRDDGRGPTVTGTTGSGLTGLQERATGAGARLVTRRLDPGWSLAVVAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQJ3</accession>
    <name>A0A0Q8VQJ3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Cell division protein SepF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">sepF</name>
        <name evidence="7" type="ORF">ASE19_02335</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer. Interacts with FtsZ.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="5">Localizes to the division site, in a FtsZ-dependent manner.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the SepF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892703.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56685">
        <property type="protein sequence ID" value="KRC56685"/>
        <property type="gene ID" value="ASE19_02335"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2064885at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000917">
        <property type="term" value="P:division septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01197">
        <property type="entry name" value="SepF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023052">
        <property type="entry name" value="Cell_div_SepF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007561">
        <property type="entry name" value="Cell_div_SepF/SepF-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038594">
        <property type="entry name" value="SepF-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35798">
        <property type="entry name" value="PTHR35798"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04472">
        <property type="entry name" value="SepF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2 5 7" id="KW-0132">Cell division</keyword>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0717">Septation</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="16"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="26"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="166" mass="18471" checksum="16DDAE9841F33F52" modified="2016-01-20" version="1">MSGAMRRIGEYLGLLEDTGYDEYDDERAEQDPRATREPRQARPVRAVPSTAGSVADLDERRRPVAVAPQPTVAELSRITTLHPTTYNDARSVGESYREGIPVIMNLTEMDDSDAKRLVDFAAGLIFATRGSIERVTNKVFLLSPPNVTVAAEDKQRIADRDFFNQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQK2</accession>
    <name>A0A0Q8VQK2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF559 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896761.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59579">
        <property type="protein sequence ID" value="KRC59579"/>
        <property type="gene ID" value="ASE19_00675"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1483891at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007569">
        <property type="entry name" value="DUF559"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04480">
        <property type="entry name" value="DUF559"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF559" evidence="1">
        <location>
            <begin position="239"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="320" mass="35885" checksum="02BA674AED219F33" modified="2016-01-20" version="1">MSTPFRYRRAYVATLDDPRTSALRELASDQGGVVSRRQLYRLRVTRWEVRAHLRAERWQRIGDQTIALHSGPVGLEGLLWAAVFQGGANALLDGATSLVASGLKRFELDRLRVSVPRGVMARRTAQFDVRQTRRWCATDRAPSGVPRTRPEVAAVRAFLWARSDREAMYVLTLAVQQGLTTPEAIGQQAIRILRDRRRALLHTAVNDLLDGARSLGELDVVAELRRRGLPPPSQQVLRRDDRGRYYLDLYWPELGVVVEIDGIHHTWAENVVADALRQNALTLSGDVVLRLPLLGLRLRPDEFFAQIANALLGAAGRRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQL4</accession>
    <name>A0A0Q8VQL4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01395</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896635.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59706">
        <property type="protein sequence ID" value="KRC59706"/>
        <property type="gene ID" value="ASE19_01395"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1645839at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="16707" checksum="DCBE94537BA9EDEF" modified="2016-01-20" version="1">MVIHLPQPKQLRDLLTELLGREVTLSPTTPFAPGPDTPASVAVYVDDQLRICALIACDLTFSAHAGAAIGLVPPGGSEAAIEDGKLTDTLSENLYEVLNIAASMFNVAGADHLKLHALHPAGPPLDPQLRISTLTLGRREDLAVSIAGYGDGVLSVVLLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR19</accession>
    <name>A0A0Q8VR19_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ATP synthase subunit delta</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">ATP synthase F(1) sector subunit delta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">F-type ATPase subunit delta</fullName>
            <shortName evidence="6">F-ATPase subunit delta</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">atpH</name>
        <name evidence="7" type="ORF">ASE19_03210</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.</text>
    </comment>
    <comment type="function">
        <text evidence="6">This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ATPase delta chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56832">
        <property type="protein sequence ID" value="KRC56832"/>
        <property type="gene ID" value="ASE19_03210"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1937493at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01416">
        <property type="entry name" value="ATP_synth_delta_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020781">
        <property type="entry name" value="ATPase_OSCP/d_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000711">
        <property type="entry name" value="ATPase_OSCP/dsu"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11910">
        <property type="entry name" value="PTHR11910"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00213">
        <property type="entry name" value="OSCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00125">
        <property type="entry name" value="ATPASEDELTA"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01145">
        <property type="entry name" value="ATP_synt_delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00389">
        <property type="entry name" value="ATPASE_DELTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0139">CF(1)</keyword>
    <keyword evidence="2 6" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="3 6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 6" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC56832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="268" mass="27845" checksum="5784B39AF2AEF8DA" modified="2016-01-20" version="1">MVSFRGASADAMAALTDQVGGVAEASAATVAGDLFSAAGAFRTEAALRRVVTDQSVPAEARTGLVGDLFTGKVDAATLGLLRDAAGRRWTRTRDLADALEQLGVVATVRSVGLQGATLVDELFGVRQLITADSDLRNALSDPVRSAADKGGLLETLFGGKVLAATLQLLRQALSGSYRTVVAALEDYERTAAQVQGESVATVHVARALADADQQRLASALAAQYGRPVHLNIVIDPQVLGGLRVEIGDDVIDGTVVSRLDDARRKIAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRE5</accession>
    <name>A0A0Q8VRE5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896662.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59679">
        <property type="protein sequence ID" value="KRC59679"/>
        <property type="gene ID" value="ASE19_01240"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2079611at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360303" evidence="1">
        <location>
            <begin position="36"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="150" mass="15803" checksum="7E5735297B386AF9" modified="2016-01-20" version="1">MSTARRTAVVAVLPALVLAALATGCGLVAQPDSTAWDDHAEQAVSDATSEVATARLALETARRERAWSSYTVVLVAQAEESLGTVQDDLSRLQVPPGRDDEAARLDALLDEAATAVEDARSSAVEGRYDDRRVLDALDRVTGRLEDAAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VU71</accession>
    <name>A0A0Q8VU71_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_02110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56647">
        <property type="protein sequence ID" value="KRC56647"/>
        <property type="gene ID" value="ASE19_02110"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="203" mass="20711" checksum="79A993154DC8F15A" modified="2016-01-20" version="1">MLTTSGTGTRARLTRIVVAVVVLAVAVTGVLVWRLGGGEEAPYADPASTGGLTLCSADGKAVTEGRTGDKPFADVVLGETPLPSDADRDGAVATLYAYQPREGIAPGEYSGSAITAATVFTDPSRPATRVTADAWSVADFVTAFPASFQGYVQLRLVLGTPALGTLADGYDTADIKVDGDRWELVRGGSASCSDATHAVADGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VUM6</accession>
    <name>A0A0Q8VUM6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Peptide chain release factor 1</fullName>
            <shortName evidence="5">RF-1</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">prfA</name>
        <name evidence="8" type="ORF">ASE19_03255</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="5">Methylated by PrmC. Methylation increases the termination efficiency of RF1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the prokaryotic/mitochondrial release factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892857.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56839">
        <property type="protein sequence ID" value="KRC56839"/>
        <property type="gene ID" value="ASE19_03255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="928964at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016149">
        <property type="term" value="F:translation release factor activity, codon specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00093">
        <property type="entry name" value="Rel_fac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005139">
        <property type="entry name" value="PCRF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000352">
        <property type="entry name" value="Pep_chain_release_fac_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045853">
        <property type="entry name" value="Pep_chain_release_fac_I_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004373">
        <property type="entry name" value="RF-1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03462">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00472">
        <property type="entry name" value="RF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00937">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75620">
        <property type="entry name" value="SSF75620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00019">
        <property type="entry name" value="prfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00745">
        <property type="entry name" value="RF_PROK_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0488">Methylation</keyword>
    <keyword evidence="4 5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RF_PROK_I" evidence="7">
        <location>
            <begin position="227"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="256"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="modified residue" description="N5-methylglutamine" evidence="5">
        <location>
            <position position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS00745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC56839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="357" mass="39379" checksum="E48686B947E90F40" modified="2016-01-20" version="1">MFEAVEGMLAEHAELETRLALPETHADARLARTLNRRYAELNAIIATWREWRHAGEDAGAARELGADDPAFAAEVDGLLARQEEAAERLRRLLVPRDPADDKDALLEVKSGEGGEESALFAGDLLRMYSRYAERRGWKTEILDATESDLGGYKSVTVAVKSTGSPEPGQTPYALLKYEGGVHRVQRVPVTESQGRIHTSAAGVLVMPEAEQVDVEINDNDLRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNEKSQLQNKEQAMRILRARLLQAAQDAADAEASDARRSQVRTVDRSERIRTYNFPENRISDHRTGYKSYNLDQVLDGDLQPVLDSCVETDMAARLAALEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VV26</accession>
    <name>A0A0Q8VV26_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Branched-chain amino acid ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_02055</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893051.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57015">
        <property type="protein sequence ID" value="KRC57015"/>
        <property type="gene ID" value="ASE19_02055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1456257at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="14"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="45"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="97"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="201"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="261"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="291"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="332"/>
            <end position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC57015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="389" mass="41926" checksum="1C005BE842923A5E" modified="2016-01-20" version="1">MDAVSDGYKRQHPAVKALILVLVALFFYGLPLLRPPLITTNEIDFGGVMFQVAAFALVALGLNIVIGYAGLLDLGYVGFYATGAYTTGVLTSQHGSWPFFLALPVAIAVTMVTGVILGAPTLRVRGDYLAIVTLGFGEIIRICVKNIEWLGASAGIKDIPHPNTIGPAAEPPFKPGGLFEIPRLEWDGLVPHLDKEHSVHFLVFGATNAIPYYWLILTALVLVLLGDRLVKNSRVGRAWEATREDEDAAELMGVPTFKFKLMAFALGAAIGGLSGSFYASGQGGYISPDSFPLLLSMLFVAAVIVGGSGNRWGAIAGGALVAYLPERFREFADFRLLFFGLALTVLAVWRPEGLLPPRRTRRAKAAAAEIEALEEGELDEQLEEEPRNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVX7</accession>
    <name>A0A0Q8VVX7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Protease 2</fullName>
            <ecNumber evidence="6">3.4.21.83</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_22705</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S9A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.83" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892606.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58877">
        <property type="protein sequence ID" value="KRC58877"/>
        <property type="gene ID" value="ASE19_22705"/>
    </dbReference>
    <dbReference type="OrthoDB" id="154149at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002471">
        <property type="entry name" value="Pept_S9_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023302">
        <property type="entry name" value="Pept_S9A_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001375">
        <property type="entry name" value="Peptidase_S9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002470">
        <property type="entry name" value="Peptidase_S9A"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00326">
        <property type="entry name" value="Peptidase_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02897">
        <property type="entry name" value="Peptidase_S9_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00862">
        <property type="entry name" value="PROLIGOPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00708">
        <property type="entry name" value="PRO_ENDOPEP_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_S9_N" evidence="5">
        <location>
            <begin position="12"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S9" evidence="4">
        <location>
            <begin position="501"/>
            <end position="716"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="110"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC58877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="723" mass="79390" checksum="EC116CA7729925A6" modified="2016-01-20" version="1">MSDVEVVQPVPPRADQRPVTTTLHGHTRTDEYEWLRAKDDPEVIGYLEAENEYTQARTAHLAGLRARIYDEIKARTLETDLSVPTRVRGYWYYGRSFEGRQYGASCRVPVTDPDDWTPPQPAADARPDEPALPGEETLLDLDELAEGHEFFSLGGSSVSPDDRLLAYATDVVGDERYTVRVIDLATRELHEDVLTDVLGGVTWGGSSDHFYYTTVDDAWRPDKVWRHHLGTAQADDELVFHEPDGRYFVGVGRTRSRRYVVVAASSKTTSEFHVLDANDPAATPQLFAERVDGVEYSLEHAVIGGRDHFLVLHNANGPEFELGLAPAVPTPASGWRPLLPHDLAVRLEDVDAFADHLVVSQRSNGTSQVRILDLGDDPEAPVVGDRLVEFPGELATVGAGSNPAWEQPTIRVGMTSLSRPSAVYDHDLRTGELVLRKQAPVLGGYDADDYEEHRLWATSTGGVQVPISLVVRKGVRGESGTDPVPVHLYGYGAYESSMDPYFSVARLSTLDRGAAFAIAHIRGGGEMGRHWYDDGKLEHKQHTFDDFAAAARHLVETGWTTPGQIVGEGASAGGLLIGAVANQAPEAFGGFVAGVPFVDTLTTMLDATLPLTIPEYDEWGNPSDDPVAYERIAGYAPYENVADLPYPPILAETSLNDTRVLYVEPAKWVARLRDRAPRADVLLRTEMAAGHGGVSGRYRAWEDRAFTLAWILDRLGLADRDPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VWZ1</accession>
    <name>A0A0Q8VWZ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23080</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58944">
        <property type="protein sequence ID" value="KRC58944"/>
        <property type="gene ID" value="ASE19_23080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="214" mass="22649" checksum="B934A5B16B02C150" modified="2016-01-20" version="1">MAADRSGGEPVTPATSSEEAGRIRLNVTLYAATVLLGCVAIFLGIVIQRSDLDLAFWKDDDASSTTPGVGQDTGRGVVTALDAADEADQERVAAQLDAATKVVDAMVNLDYKTVDDDIEAVRGLATGTFLDQWDKASANVKSLAERAQSTTKGDVVWTGLVSGDKDSATVIVAATGTAASKTTEFKEEARNYRMQVELVLDKGAWLTSDLQYVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYV1</accession>
    <name>A0A0Q8VYV1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">GH16 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_00335</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896818.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59522">
        <property type="protein sequence ID" value="KRC59522"/>
        <property type="gene ID" value="ASE19_00335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000757">
        <property type="entry name" value="GH16"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00722">
        <property type="entry name" value="Glyco_hydro_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51762">
        <property type="entry name" value="GH16_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GH16" evidence="2">
        <location>
            <begin position="107"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="95"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51762"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="385" mass="41626" checksum="9B7FF4C983D600CF" modified="2016-01-20" version="1">MTAVLWSSGAPAAEARSGAPVLDRPTTHARTVVLTGRARPRAVVALQVRKGRWATVRKVRAASNGRYRAVVPAPRRALPYRAVSKGRASTVRQVRPPKPPQPPTTPTPPPTTPTPPPTPPAPAPSDACGSRPQRADGSYWECSFVDEFDGSALDRTKWLVQATSYSGMSSGNRDCYVDDGTTVGVSEGTLKVSARRQLAAFTCASPYGSFTTTSTAGTVTTRDRFSQTYGRYEFRARMPQTAGLTGPHSALWLYPERNTYGAWPASGEIDVAEWFSARPANVYPSAHYAGEVVPTTTGTTCAMPTSSTAFHSYVVEWTATRMSFSYDGVVCWSHSWAPTGLVTPKPFDKPFNLVITQVWGSLFNAPTASSPTSATLEVDWVKAWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W1G0</accession>
    <name>A0A0Q8W1G0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_00555</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896781.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59559">
        <property type="protein sequence ID" value="KRC59559"/>
        <property type="gene ID" value="ASE19_00555"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1200451at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03301">
        <property type="entry name" value="ABC_MalK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015855">
        <property type="entry name" value="ABC_transpr_MalK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040582">
        <property type="entry name" value="OB_MalK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17912">
        <property type="entry name" value="OB_MalK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="4"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC59559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="400" mass="43440" checksum="5F8F63F56FF293C1" modified="2016-01-20" version="1">MAAITMNHIVKKYGDGFPAVNDVSIDVADGEFMILVGPSGCGKSTLLRMIVGLEDITSGDMLIGERRVNDLAPRERNLAMVFQNYALYPHLTVYENIAFPLRLAKMPDAEVDKLVRDASATLELDEHLERKPGNLSGGQRQRVAMGRAIVRQADAFLFDEPLSNLDAKLRGQMRTEIARLQKRLGITTVYVTHDQTEAMTLGDRVAVLKRGVLQQLATPRELYENPGNLFVAGFIGSPPMNFLPATVEGDSLQLPFGSVRIPADKASRAAGRGLLIAGIRPEHFEDASLASADGRGGSTFAATVDAVEWLGNETYAYIPFEAPAEVREQLQQLEKDLDGEGMRTQLVVSLDGASRIAEGSEAEIWVDASKIHLFDPATGENLTVDRERAGRIPGAEVAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W295</accession>
    <name>A0A0Q8W295_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH gntR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00840</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896889.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59815">
        <property type="protein sequence ID" value="KRC59815"/>
        <property type="gene ID" value="ASE19_00840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1775418at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1410.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028978">
        <property type="entry name" value="Chorismate_lyase_/UTRA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011663">
        <property type="entry name" value="UTRA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07702">
        <property type="entry name" value="UTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00866">
        <property type="entry name" value="UTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64288">
        <property type="entry name" value="SSF64288"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="216" mass="23619" checksum="F1DE79581B865032" modified="2016-01-20" version="1">MRDLVRDRAPGTPAPSERELVDRFGVARMTVRQALDALVGEGVLERHPGRGTFVAGPRRSATGVVGFTEDMALRGRAVETRTLLAEVVPAGEQLAGVFRVRPDELLVRWVRLRLGDGRPVCLSDTYLPEALVPDLAAHLPASLYDELAARGHRPTWAEDTVTAAPASDDEASLLEIAPGSPALRLTRRALWDETVVELTRSVLRGEDHVLHLQFRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UME6</accession>
    <name>A0A0Q8UME6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20100</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895945.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46170">
        <property type="protein sequence ID" value="KRC46170"/>
        <property type="gene ID" value="ASE19_20100"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359217" evidence="1">
        <location>
            <begin position="31"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="259" mass="28241" checksum="22D32EDC9FAB3663" modified="2016-01-20" version="1">MKRRTRLSALAATIAVLATTPAVAGLQADADPKPKVNDPGYDILFVRHAKSVYPVPEEELNALGIQQAAKLVEYLHDAPIRSVDSSIMVRTYQTADGVAADHDVPVLADEDLREVELVSKDERVAGGIMASWVMDPSTRGNAFGGAEDYYDVQERWDRWWTQYAREHRNDRGTGVVVAHGGIYGLMLPETCANKPQLPFSERFPGNTEFIKAHLNPNGTLVCTAFGVSPDPAAMPNPDGSPHHYYEVDPVTGASTKVVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMH6</accession>
    <name>A0A0Q8UMH6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Virion core protein (Lumpy skin disease virus)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19970</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895924.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46148">
        <property type="protein sequence ID" value="KRC46148"/>
        <property type="gene ID" value="ASE19_19970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="886332at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd03408">
        <property type="entry name" value="SPFH_like_u1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033880">
        <property type="entry name" value="SPFH_YdjI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13421">
        <property type="entry name" value="Band_7_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Band_7_1" evidence="2">
        <location>
            <begin position="118"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="338"/>
            <end position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="398" mass="41309" checksum="05F084FAA5A7862B" modified="2016-01-20" version="1">MGLIQAAIGAIGGTLADQWVDFYGVPDGIGSTVAVFPAVAKGQNAGRGSNTQGSEGVITNGSKIIVPEGYGLVLLEDGAFTGFAAEPGAYIWNSDDPASQSVFTGGGLVDSIIKQSWERFKFGGRPSAQQSAIFVTLKELPNNKFGTQSEIYWDDAFLNTQVGAITRGTYTLKITDPLTFIRNFVPAEVIGGRKSFDFTDIDNPAGEQLFNEVVGSLAPAFSMYTNDPAKGNRITKLQQDSIGFAQSLSAAVEQNYQWRTDRGIEIVKTAIISIEYDANTRELLKNVQRADALSGSRGNSNLQASVAAGIEAAGENAGPGGLIGMGMATGGMGLGGLQQPVPPAGAPAAPAATAPPAAPAEAAAEDPMAVLKRAKEMLDAGLITQADYDAAKAKALGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMV9</accession>
    <name>A0A0Q8UMV9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21060</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896101.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46330">
        <property type="protein sequence ID" value="KRC46330"/>
        <property type="gene ID" value="ASE19_21060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2228242at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359249" evidence="2">
        <location>
            <begin position="20"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="114" mass="11430" checksum="C2B0E831CFCC3F7C" modified="2016-01-20" version="1">MTDLRVPASSSTPASTRKAAVVTSIVAIVLGLAEAGFGAYCWYLTDIDPSDDPLVAVGYVLAIVVAAPGVVGLLLGGLGWLLADRTAGLVLAILAAVVVALPVLVVAPFSLPGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN35</accession>
    <name>A0A0Q8UN35_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">AraC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_21515</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896181.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46411">
        <property type="protein sequence ID" value="KRC46411"/>
        <property type="gene ID" value="ASE19_21515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1785082at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032783">
        <property type="entry name" value="AraC_lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037923">
        <property type="entry name" value="HTH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12852">
        <property type="entry name" value="Cupin_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51215">
        <property type="entry name" value="SSF51215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="222"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="327" mass="35472" checksum="1CB800AE6AD77F34" modified="2016-01-20" version="1">MDDRDPAAGLDDALAQLRLQGAIFLHAQYTEGWAYRSAPNADLGRVLAPHARRIVPFHVVAAGRCWIEVDGDRHWADEGDVIVLPYGDPHVMGGTEDAEVVEALALVPPPPWTSMPFIEHGRGGALTHVVCGYLVPDSVLFDPELRALPKVLVVSPRGPAAHWVRASLDYALSQTALDAPDHGATPPHLVQQLLTEVLKLHLAEAPASTVGFLRALRDPVLAPALARIHRDPGHKWTVAELAALACSSETVLDEHFRAVLGVPPIRYLTAWRMHVAQDLLATSDLGVAAIARRVGYESEEAFSRAFKRKHEVAPSHWRRGAGPAPAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNB4</accession>
    <name>A0A0Q8UNB4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21765</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896222.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46453">
        <property type="protein sequence ID" value="KRC46453"/>
        <property type="gene ID" value="ASE19_21765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="968232at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008667">
        <property type="term" value="F:2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019290">
        <property type="term" value="P:siderophore biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003560">
        <property type="entry name" value="DHB_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01397">
        <property type="entry name" value="DHBDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="232" mass="24494" checksum="238B87E82F1148FD" modified="2016-01-20" version="1">MPTKVIIGADRGIAHSIAQQLHAAGNDVLAVTMGDGSDLVAAGIAVESGVNVTSEDDVARLAKRLESDGVEIDQLFHVAGVMFLDDIETVDYDDVRKQFEINTIGPLRVIRALRGFLVEGAKVGILTSRVGSLNDNTSGGDYAYRISKAAANMVALNLHHDLSKGGVAVQALHPGMVNTGLLDAMTPEDRERAASILVTPEQSASNLISVLDSLTVETGGKFQHANGDILPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNL9</accession>
    <name>A0A0Q8UNL9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_22570</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896357.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46588">
        <property type="protein sequence ID" value="KRC46588"/>
        <property type="gene ID" value="ASE19_22570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="930905at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="2"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="142"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="221" mass="23362" checksum="5A4592D9586EAADA" modified="2016-01-20" version="1">MRIVVADDSVLLREGLQLLLAEAGHDVVAAVGDGPGFVDAVLEHRPDLAIVDVRMPPSHTDEGLRAAVAVRRAWAGARVLVLSQYVVASYADELLATGEGGVGYLLKDRVSEVAEFLDALVTVQAGGTALDPMVVRHLMGRRHDPLLALTPREREVLALMAEGRSNAAVAEALVVSLAGVEKHTQRIFAKLGLAPDDDQSHRRVLAVVRYLSAGGQAGSSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UR81</accession>
    <name>A0A0Q8UR81_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF2017 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20605</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896020.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46249">
        <property type="protein sequence ID" value="KRC46249"/>
        <property type="gene ID" value="ASE19_20605"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1738659at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018561">
        <property type="entry name" value="DUF2017"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09438">
        <property type="entry name" value="DUF2017"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2017" evidence="1">
        <location>
            <begin position="12"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="197" mass="22207" checksum="A93CFC6EBDDAB93C" modified="2016-01-20" version="1">MASSTTGFVRHRRSKRAIATFSVFEADLLRSLAAQLVELLHNESAVLKTERDPLEALLDFSGPTTEPEDPVLRRLFPNAYRDDGEAASEFRRFTEGELRDGKSRAAGTIIDVLEEAGLPAEPTDDGISIDVELDEATALVWLRSLTDLRLALGTRLEVEEGDEEYWYSLPDEDPRLQAHHIYEWLGFLQETLVHALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU66</accession>
    <name>A0A0Q8UU66_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">GTP cyclohydrolase 1 type 2 homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_17485</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the GTP cyclohydrolase I type 2/NIF3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893130.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48726">
        <property type="protein sequence ID" value="KRC48726"/>
        <property type="gene ID" value="ASE19_17485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="502462at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002678">
        <property type="entry name" value="DUF34/NIF3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017221">
        <property type="entry name" value="DUF34/NIF3_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036069">
        <property type="entry name" value="DUF34/NIF3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13799">
        <property type="entry name" value="PTHR13799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01784">
        <property type="entry name" value="NIF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037489">
        <property type="entry name" value="UCP037489_NIF3_YqfO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102705">
        <property type="entry name" value="SSF102705"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00486">
        <property type="entry name" value="YbgI_SA1388"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR037489"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="373" mass="39086" checksum="6E700C7D9251DF34" modified="2016-01-20" version="1">MPALKDVVDLIHGWYPPATADSWDAVGLVHGDPDQQVRKVLLAVDPTPAVAEEAADWKADLLVVHHPLFLKPVNGFPATSPKGRTLHTLAKADCALLTAHTNADQAVGGVSEALAHALGLTDLEPIVPAPIGPRDKLTVFVPPDAAAPVRAAIAEAGAGRIGDYEFASFTSAPGEGRFRPLEGANPMVGTVGELETVEEVRVEVVLDRAVRSAVVRAMLAAHPYEEPAWDVVELADPGLATTGTGRIGSVSPMTLGEFAAQVAAALPATAHGVRVAGDETRPVRRVAVCGGAGDFLLDRVAGLGVDAYVTSDLRHHPASEFLEKGGPALVDIAHWAAESTWLPVLEGRLKDALGDAVDTRMSTIVTDPWTMHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UU97</accession>
    <name>A0A0Q8UU97_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">Adenosylcobinamide kinase</fullName>
            <ecNumber evidence="8">2.7.1.156</ecNumber>
            <ecNumber evidence="9">2.7.7.62</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">Adenosylcobinamide-phosphate guanylyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">ASE19_17510</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <reference evidence="18 19" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>adenosylcob(III)inamide + ATP = adenosylcob(III)inamide phosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15769"/>
            <dbReference type="ChEBI" id="CHEBI:2480"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58502"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.156"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>adenosylcob(III)inamide + GTP = adenosylcob(III)inamide phosphate + GDP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15765"/>
            <dbReference type="ChEBI" id="CHEBI:2480"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="ChEBI" id="CHEBI:58502"/>
            <dbReference type="EC" id="2.7.1.156"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>adenosylcob(III)inamide phosphate + GTP + H(+) = adenosylcob(III)inamide-GDP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22712"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58502"/>
            <dbReference type="ChEBI" id="CHEBI:60487"/>
            <dbReference type="EC" id="2.7.7.62"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cofactor biosynthesis; adenosylcobalamin biosynthesis; adenosylcobalamin from cob(II)yrinate a,c-diamide: step 5/7.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; adenosylcobalamin biosynthesis; adenosylcobalamin from cob(II)yrinate a,c-diamide: step 6/7.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the CobU/CobP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.156" evidence="8"/>
    <dbReference type="EC" id="2.7.7.62" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893135.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48731">
        <property type="protein sequence ID" value="KRC48731"/>
        <property type="gene ID" value="ASE19_17510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1765140at2"/>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00236"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043752">
        <property type="term" value="F:adenosylcobinamide kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008820">
        <property type="term" value="F:cobinamide phosphate guanylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003203">
        <property type="entry name" value="Cobinamide_kinase/P_G-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34848">
        <property type="entry name" value="PTHR34848"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02283">
        <property type="entry name" value="CobU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006135">
        <property type="entry name" value="CobU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="17" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="12 18" id="KW-0418">Kinase</keyword>
    <keyword evidence="11 17" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 18" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="GMP-histidine intermediate" evidence="16">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <begin position="7"/>
            <end position="14"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <begin position="31"/>
            <end position="33"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <begin position="49"/>
            <end position="52"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001522"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00003889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00005159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00007490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00012016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00012523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00029570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00030571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR006135-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PIRSR" id="PIRSR006135-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="KRC48731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="173" mass="18143" checksum="1EB3AF3FAE70B7E9" modified="2016-01-20" version="1">MKVLVTGGVRSGKSRHAESLLASAADVTYVAAGPAYDDADWAARIAAHRVRRPASWRTEETQDVARVLAAASGPVLVDCLGTWLTAVIDAAGLWEAPVDQVESAVLAELDATVAAVATAEVPVVLVTNEVGLGVVPVERSGRLFRDLLGTVNQRVAEACDEVHLVVAGRVLRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUA9</accession>
    <name>A0A0Q8UUA9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA topoisomerase (ATP-hydrolyzing)</fullName>
            <ecNumber evidence="3">5.6.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_17665</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the type II topoisomerase GyrA/ParC subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893159.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48757">
        <property type="protein sequence ID" value="KRC48757"/>
        <property type="gene ID" value="ASE19_17665"/>
    </dbReference>
    <dbReference type="OrthoDB" id="217468at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034335">
        <property type="term" value="F:DNA negative supercoiling activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00187">
        <property type="entry name" value="TOP4c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.268.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.199.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006691">
        <property type="entry name" value="GyrA/parC_rep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035516">
        <property type="entry name" value="Gyrase/topoIV_suA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013760">
        <property type="entry name" value="Topo_IIA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013758">
        <property type="entry name" value="Topo_IIA_A/C_ab"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013757">
        <property type="entry name" value="Topo_IIA_A_a_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002205">
        <property type="entry name" value="Topo_IIA_dom_A"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03989">
        <property type="entry name" value="DNA_gyraseA_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00521">
        <property type="entry name" value="DNA_topoisoIV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00434">
        <property type="entry name" value="TOP4c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101904">
        <property type="entry name" value="SSF101904"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56719">
        <property type="entry name" value="SSF56719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 9" id="KW-0413">Isomerase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="TOP4c" evidence="8">
        <location>
            <begin position="21"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="783"/>
            <end position="813"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC48757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="841" mass="90213" checksum="6BD438DCC9E07701" modified="2016-01-20" version="1">MARRTKSDPLPEDFEEHILDTDIRDEMQSSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMNDMRLMPDRGHTKCARIVGEVMGRLHPHGDGAIYDALVRTAQSWSLRLPMVDGHGNFGSPGGEDPPAAMRYTEARMAPAAVAMTESIEEETVDFKPNYDSREYEPTVLPSAIPNLVVNGTTGIAVGMATNMAPHNLVEVVQALRHLIQHPKTDVDGLMRFIPGPDLPTGGKIVGLDGIRDAYETGRGIFKMRATARIDNVGRRKGIVVTELPYGIGTEKVMERIKTLVQTKKIQGIADMKDLTDRENGLRLVIEIKNGFVPEALLEQLYKLTPMEDSFGINNVALVDGQPRTLGLKEMLEVFLEHRFDVVRRRSQFRRNKKAARLHLVDGLLIALLDIDEVIQVIRTSDNSAAAKERLRSVFDLSEEQAEYILEMQLRRLTRFSRLELEKEQEELRKEIEDLDAILADEGRLRKVVSDELAEVAKTFGTPRRTVLLESAGSTAVAAAAAPLEVADDPCFALLSSSGLLARTTSADELGTGGGRANHDVVVSAVRTSARSDIGVLTSAGRLLRLGVLDLPAIPPSANEPNLQGGLPLSEVLELASGERALGLTTLTADGPGLALGTKQGVVKRVNPEVISKDEWEVISLKDGDEVVGAVQLVTGTEELCFVTSDAQLLHFGADGVRPQGRSGGGMAGVRVADGERVVWFGVLDLNAPGGVVLVTASGSSTALPGTEPGSVKVTDFWEYPAKGRATGGVRCHRFLKGEDTLVFAWAGPAPARGTAASGAPVDLPDAGGRRDGSGVPGSQPLAAAAGPLTATLTVASGGGTAPDSPPTDVSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUD1</accession>
    <name>A0A0Q8UUD1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Iron ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_17775</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48776">
        <property type="protein sequence ID" value="KRC48776"/>
        <property type="gene ID" value="ASE19_17775"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="PTHR30472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="64"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="93"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="120"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="146"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="193"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="234"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="273"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="303"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC48776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="329" mass="32971" checksum="5CB50C892F00343F" modified="2016-01-20" version="1">MPSGRAVRCGVLGGALVLLLVGVVLSVALGVREVAFGEAWRALTDPVAGNVDHAVIRGQRVPRTLIALLAGTALGLAGVLSQGITRNPLADPGLLGLNAGAALGVVVAATVLGVTGAGSVVWFAFLGAAVAAVVVFAIGNGRPVQLALAGATVTALLTPISTLVLFRDVDAFNELRYWQVGALNGRDLGAVEVLWPFIALGAALAFFVAHRLNGLALGDDVAAALGQGVGTTRALAGLAIILLAGAATALAGPIALVGLAVPHAARRLVGTDYRWLVPLCALLGPVMLMAADIIGRLVRSDELEAGVVAALIGAPVLIAVARGRRVAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUP2</accession>
    <name>A0A0Q8UUP2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18410</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893289.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48888">
        <property type="protein sequence ID" value="KRC48888"/>
        <property type="gene ID" value="ASE19_18410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="33924" checksum="EA1D2DD27E987879" modified="2016-01-20" version="1">MAEEVRGNLAIEDRGAVLVARIDGGPLGLFGNDIAEQLDALVDRADRDPAVQAVVFTGTHPERFVSHAEVRWLQEGGATVPSVGVRGASALAHTARGVNRVGGLKAALGRTPLWPAVQLERVHQTFLKMNRSGVIFIAALNGSALGLGAEFCWANDLRVMADGDFVIGQPEVLLGIMPGGGGSQRLPRLVGNHQALLAILSGEPFTPAQALEVGAVDDVVAPDQVLDRALEVARHLGSRPKSSRAAIKRSVYFGGSASLEEGLHIERSEFLATALSGIGQELMLDYMTNTEASGELPLYQPGVYEQVLETGTTRGAGAKGAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUV5</accession>
    <name>A0A0Q8UUV5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-demethylubiquinone-9 3-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17725</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48767">
        <property type="protein sequence ID" value="KRC48767"/>
        <property type="gene ID" value="ASE19_17725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1889762at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06588">
        <property type="entry name" value="PhnB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009725">
        <property type="entry name" value="3_dmu_93_MTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028973">
        <property type="entry name" value="PhnB-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06983">
        <property type="entry name" value="3-dmu-9_3-mt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF021700">
        <property type="entry name" value="3_dmu_93_MTrfase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0830">Ubiquinone</keyword>
    <feature type="domain" description="3-dmu-9_3-mt" evidence="1">
        <location>
            <begin position="5"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="154" mass="16985" checksum="D052E6004AFE4E90" modified="2016-01-20" version="1">MSITHIQPCLWFDDRLEEAARFYTGIFPNSSITHLGPLAGEFTLDGITFRGINGGPSYPFTEAVSFSVTCRDQTEVDYYWDSLADGGQESVCGWLRDRFGLSWQIVPTRLHELMTDPDPARAEAASRAMLGMRRIVVAELEAAADAAVPRPGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUX1</accession>
    <name>A0A0Q8UUX1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Peptidase_A24 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_19215</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase A24 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893422.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49020">
        <property type="protein sequence ID" value="KRC49020"/>
        <property type="gene ID" value="ASE19_19215"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000045">
        <property type="entry name" value="Prepilin_IV_endopep_pep"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01478">
        <property type="entry name" value="Peptidase_A24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="56"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="81"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="108"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="133"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="165"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="219"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_A24" evidence="3">
        <location>
            <begin position="87"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC49020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="241" mass="24984" checksum="A43B2FF2EDA78ECF" modified="2016-01-20" version="1">MDVLPALVGAAVGLVGGFAVPRLVAWCPEPEHDPTENPDDFPDHVPFAELAARPGLAWRSAAACAVAGALVGLVTGWGWSLLWLLPLIPVLCALTVIDFVTWYLPSRLIRPSWAAVAGLLAAVAVVEREPGWVLAGVIGFLALGGYYGLMRLLMPRGMAGGDVRLGALLGLALGPLGLGALLVSVLAASLLSVVAYLPMLVRGRAIKATDARGPLQHRVPYGPFLVLGALVAVVVGQVLST</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUZ5</accession>
    <name>A0A0Q8UUZ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Phenylacetaldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_18005</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893216.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48815">
        <property type="protein sequence ID" value="KRC48815"/>
        <property type="gene ID" value="ASE19_18005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="744602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07092">
        <property type="entry name" value="ALDH_ABALDH-YdcW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015657">
        <property type="entry name" value="Aminobutyraldehyde_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="15"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="247"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC48815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="479" mass="51035" checksum="6685F240AD941233" modified="2016-01-20" version="1">MTPLRNLIDGALVDAASGATYDVVNPATGQAYTTAPSSGAEDVDRAMRAADRAFDGWGDTTPKERQEALLRIAQAIEDRAEEFVQVESENTGKPIGITRDEEMPPSVDELRFFAGAARVLEGRSAGEYLADHTSWIRREPIGVVAQVTPWNYPLMMAIWKIAPALAAGNTIVLKPSDTTPASTVLLAEVAGEFLPPGVLNVVCGDRTTGRALVEHPTPQLVAITGSVRAGMEVAASAATDLKRVHLELGGKAPVVVFDDADVAAAAEAIAGAGYFNAGQDCTAATRVLASAGIHDELVAALAEQARSTRTGMPDDPDVLYGALNNPDQLARVSGMVDRLPDHATIQAGGGRPVVAGGEGGYFFEPTVVSGLRQDDEAVQQEIFGPVITVQQFGDEAEALRFANGVQYGLSSSVWTRDHARAMRMSKRLDFGVVWINTHIPFVSEMPHGGFKHSGYGKDLSMYGLEDYTRIKHVMSYTGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVF5</accession>
    <name>A0A0Q8UVF5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">bPH_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_20915</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896074.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46304">
        <property type="protein sequence ID" value="KRC46304"/>
        <property type="gene ID" value="ASE19_20915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1750498at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005182">
        <property type="entry name" value="DUF304"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03703">
        <property type="entry name" value="bPH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="domain" description="bPH_2" evidence="2">
        <location>
            <begin position="78"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="175" mass="19358" checksum="99B87192ED0FD1BB" modified="2016-01-20" version="1">MAISKKLLNPGERLILSTRQHPKALFVPILALVVLLAIGVAAEANLDDDGFQQVLGYIVWVLVILGIAWFSVRPFLVWATTVHAFTDRRLITRWGIVTRRGHDIPLARVSDISIEINLIDRPFGCGSLLIADASANQPARLNDIPHVEAAQRQLNELLHELHQGGGRRDGRDEGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVH1</accession>
    <name>A0A0Q8UVH1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Diaminohydroxyphosphoribosylaminopyrimidine deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18355</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893838.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49108">
        <property type="protein sequence ID" value="KRC49108"/>
        <property type="gene ID" value="ASE19_18355"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1928091at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="1">
        <location>
            <begin position="7"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="352" mass="38526" checksum="669031B4B1913AF8" modified="2016-01-20" version="1">MDPTQPVLVTGATGYVASWIVRYLLEDGYVVRGTVRDPDKSSGLEHLHALAAEHPGRLTLHRADLLTDGSYAEAMEGCELVIHTASPFLLGKVRDPQRQLVTPALDGTRNVLASVEATPSVKRVVLTSSVVAIHGDNADMAGRGPFDESDWNTTSSVDHQPYPYSKTVAERAAWEICERQDRWDLVTIHPGLVLGPALTTASKSGSMTTMKAFTDGSLLGGAPDLAMGMVDVRDVARAHILAGFTPEAHGRYITNARTITMLQIGKILRGAFGLTYPFPHNRIPKRVFKLVAPVAGYSREFVEKNVGWPLEFDNTRSRQELGLAYRDPASTVTEHFQQMIDDGIARTSPLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVN3</accession>
    <name>A0A0Q8UVN3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Germane domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_21375</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896155.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46384">
        <property type="protein sequence ID" value="KRC46384"/>
        <property type="gene ID" value="ASE19_21375"/>
    </dbReference>
    <dbReference type="OrthoDB" id="796522at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019606">
        <property type="entry name" value="GerMN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018910">
        <property type="entry name" value="Lipoprotein_LpqB_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10646">
        <property type="entry name" value="Germane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10647">
        <property type="entry name" value="Gmad1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00909">
        <property type="entry name" value="Germane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="1" id="KW-0564">Palmitate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359469" description="Germane domain-containing protein" evidence="3">
        <location>
            <begin position="25"/>
            <end position="579"/>
        </location>
    </feature>
    <feature type="domain" description="Germane" evidence="4">
        <location>
            <begin position="200"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="579" mass="60327" checksum="6EB26F80C684B5F3" modified="2016-01-20" version="1">MRRSAIAALLAAGTLLLGGCVSLPTDGPIVDSDVIDVDSPRQASDIDARPPVAGASRSDVVSGFLDAMTAWPVQINVAKKYLTEQAAAGWNPERETVVYSDAPLSPRETGNTVDVQLGAADALDGAGAWRGALGGGDLSLEFRVTVEDGEFRIADPADALVVPASWFQQRYRQVSLYFFDPIAQILVPEPVFVPQGDQLATSLVAGLLGGPPPQARGLVRTFVPTGLSVGLSVPVDDRGVADINLVGDAPRMTAEESELMLAQLAWTLRQDPDISALHVTVGGEELPIPGGASQFPIDGGDAFDPAGSKATTLLFGLSRGRLVWGSSGNLVPATGPFGDLDSDLDSVAARPDAAVAAAVDQDGHRVRTASVRDATGTALADTVLSGGTYARPSWDFAGRLWVLDRRRGGARVLVVEDGRAREVAVEGITGRDARALVVSRDGTRLVAVVATSAGDEVVGARVLINGRGRVARTRSPFLVRSAEGTRIDDITWTSPIRVGLLTATAPGSLYEVDVVAADGASVGVDVLSTIVSGRLLGLAGAPSDGTPMFAVYGERYVDMVDQSEYSAEVLPLTQLDYAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UW59</accession>
    <name>A0A0Q8UW59_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Succinate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_22205</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[3Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:21137"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896296.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46528">
        <property type="protein sequence ID" value="KRC46528"/>
        <property type="gene ID" value="ASE19_22205"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1605514at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051538">
        <property type="term" value="F:3 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004489">
        <property type="entry name" value="Succ_DH/fum_Rdtase_Fe-S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025192">
        <property type="entry name" value="Succ_DH/fum_Rdtase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13085">
        <property type="entry name" value="Fer2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00384">
        <property type="entry name" value="dhsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0003">3Fe-4S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="7">
        <location>
            <begin position="148"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC46528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="247" mass="26609" checksum="AA8B77A0F4C6F747" modified="2016-01-20" version="1">MKLTLKIWRQENPTATGAIHTYELDGVSKDMSFLEMLDLLNEQLVTSGEEPVAFDSDCREGICGMCSLMINGEAHGPEVTTTCQLHMRSFNDGDTITIEPWRAEPFPVLKDLVVDRSAFDRIIQAGGYISANTGSAPEANSVPAPRDKAMRAFNVATCIGCGACVAACPNGSASLFMGAKITHLGELPQGQPERWSRVVDMVGQHDHEGFGGCTNIGECASACPKEIPLDVISQLNKDLRTALKNGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UW80</accession>
    <name>A0A0Q8UW80_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Thioredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19870</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895905.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46129">
        <property type="protein sequence ID" value="KRC46129"/>
        <property type="gene ID" value="ASE19_19870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1630944at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="2">
        <location>
            <begin position="15"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="165"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="32940" checksum="D6E8159ADECAC281" modified="2016-01-20" version="1">MTQQPFSRPGAIDLSALGRTAPAAPAGAPAGGGGAGAGGGGIAGSAYSVAVDETNFETVLQASMTAPVVLVFLSPSQSPESVQLARDVATVADEYDGRFLAATIDVDAVPQIAQAMQIPQVPLMLVILDGRPATQPIPGAAPIDDIRALFNQLAQQLTAQGIAGRHQPNALGGAAPAGDGEDGEPELDPRYAPAQDALAAGDIDAAVAEYQKLADANPADHEAVAGLAMAKVLQRTQGADLNAARAAAAANPDDIDAQTLVADLDMLGGHVEDAFARLVELVRRTSGKERDRAREHLLGLFGAVGNDDPRVLKGRQALASALY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXW1</accession>
    <name>A0A0Q8UXW1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_16020</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893585.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50118">
        <property type="protein sequence ID" value="KRC50118"/>
        <property type="gene ID" value="ASE19_16020"/>
    </dbReference>
    <dbReference type="OrthoDB" id="856767at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359518" evidence="7">
        <location>
            <begin position="18"/>
            <end position="844"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="16"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="272"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="321"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="371"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="417"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="441"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="498"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="717"/>
            <end position="743"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="766"/>
            <end position="790"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="810"/>
            <end position="830"/>
        </location>
    </feature>
    <feature type="domain" description="MacB_PCD" evidence="9">
        <location>
            <begin position="20"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="8">
        <location>
            <begin position="302"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="domain" description="MacB_PCD" evidence="9">
        <location>
            <begin position="495"/>
            <end position="688"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="8">
        <location>
            <begin position="747"/>
            <end position="835"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC50118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="844" mass="87634" checksum="6A0BB276748E959D" modified="2016-01-20" version="1">MLRLTLRNLLARKVRLVMSGLAIVIGVAFLSGVMVFSNGLSATFDGIIYGSTPDGVVRPEATDEFSDGTGGQSAQAMTTETVDALAALPEVERADGDINGVGMSLLAKDGTLVGGTGAPTLAFNYHDGPNMAGDDILLLQDGAWPTGTDQVVLDEAAAEAGDYEIGDQVKLLAPFGVLERKATLVGTAEFNGGGTAGATLLIFSTKGAQELFFQGKDVFNRISLTAAPGVTQRELADAADKVLPTGFEAVTGDKVAEESQDAVGSFLDVIKVFLTVFAIIAVIVGGFIIVNTFSILIAQRTRELALLRALGASRGQVTRSVLVEAFVLSVISSTLAIGLGLLLARGLAAIFRTIGLDISSEALDLTSRATITSYVVGIGVTMLAAFLPARRAGKVAPVAAMRSDVAPERASLRRRTVIGAVVLVIGAGFAAAGVARSDALLVGIGAVIWILTVAAISSVIGKPVLAVCRSLFAALFGTTGRLAGENALRDPRRTGATASALMIGLALVSTIGVLAASLNKSIDDVVDEQFTADLLVQSTTFLPFSTEVGDRVEKIDGVGTMSRQQLTTARYDGKGAYVTGIDEHFTSIYHLKVTDGTDDVSGAQAFVSTGFADKHHLEVGDTLDLTFLGNQELAPKVVGIVDDTEVSSEITLPLDQLAKAGVLRQDSTISVLLAPGADSDVVRDAIDEAAADVPIIGVYDKAGFADVIREQVNQLLYMIYGLLALAIVIAVIGIVNTLGLSVIERTREVGLLRAVGMSRAKLRRMIMLESVTIALLGAVLGMALGLVIGVLLQNVLSDELSSLGLPLGQLVAFLVIAVVVGVLAAVVPAIRASRLDVLDAIATE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXY8</accession>
    <name>A0A0Q8UXY8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Glycerol-3-phosphate dehydrogenase</fullName>
            <ecNumber evidence="6">1.1.5.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_16035</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a quinone + sn-glycerol 3-phosphate = a quinol + dihydroxyacetone phosphate</text>
            <dbReference type="Rhea" id="RHEA:18977"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="1.1.5.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 6">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.5.3" evidence="6"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893588.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50120">
        <property type="protein sequence ID" value="KRC50120"/>
        <property type="gene ID" value="ASE19_16035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="360065at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009331">
        <property type="term" value="C:glycerol-3-phosphate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052591">
        <property type="term" value="F:sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006072">
        <property type="term" value="P:glycerol-3-phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.870">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031656">
        <property type="entry name" value="DAO_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038299">
        <property type="entry name" value="DAO_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000447">
        <property type="entry name" value="G3P_DH_FAD-dep"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11985">
        <property type="entry name" value="PTHR11985"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16901">
        <property type="entry name" value="DAO_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01001">
        <property type="entry name" value="FADG3PDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00977">
        <property type="entry name" value="FAD_G3PDH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3 6" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="8">
        <location>
            <begin position="24"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="domain" description="DAO_C" evidence="9">
        <location>
            <begin position="408"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="545"/>
            <end position="585"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="545"/>
            <end position="563"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF16901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC50120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="585" mass="64085" checksum="F9D411FA08304F24" modified="2016-01-20" version="1">MNPAPLSPRARTGALKKLAGQHLDVLVIGGGVVGAGAALDAATRGLNVGLVEARDFASGTSSRSSKLIHGGLRYLEMMDFRLVAEALKERGLLMQRLAPHLVRPVPFLYPLNGRGWERWYAGSGVALYDAMSKASGYGDGMPLHRHLTRHGARKAFPSLRKDALVGAIRYYDAQVDDARHTMFLARTAATYGAAVASRTRVVGLIKESERVVGASVIDLETGQRFDVRASQVINATGVWTDETQGMARERGQFKVRASKGIHLVVPRDRIRGETGLILRTEKSVLFVIPWKRHWIIGTTDTDWELSKDHPAASSSDIDYLLEHVNGVLEVPLTRDDVEGVFAGLRPLLAGESEATSKLSREHAVAHSVPGLVVVAGGKYTTYRVMAADAVDEAVHGLETVLGRKVGDCVTENIPLVGADGYHALWNQRRTLAAQSGLAINRVEHLLERYGSLVLEVLQLIAAEPDLGQPLPGAEDYLQAEAVYAVTHEGARHLDDILTRRMRISFETFDRGVQAAPHVAELVRGYLQWDVDQTKRELEHYLKRVEAERESQRQPDDHTADAARKGAPDVVPVSRIAEELETLESP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY02</accession>
    <name>A0A0Q8UY02_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_16325</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893640.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50172">
        <property type="protein sequence ID" value="KRC50172"/>
        <property type="gene ID" value="ASE19_16325"/>
    </dbReference>
    <dbReference type="OrthoDB" id="788498at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.101.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015020">
        <property type="entry name" value="DUF1906"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002477">
        <property type="entry name" value="Peptidoglycan-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036365">
        <property type="entry name" value="PGBD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036366">
        <property type="entry name" value="PGBDSf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08924">
        <property type="entry name" value="DUF1906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01471">
        <property type="entry name" value="PG_binding_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47090">
        <property type="entry name" value="SSF47090"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359533" evidence="1">
        <location>
            <begin position="18"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="domain" description="PG_binding_1" evidence="2">
        <location>
            <begin position="356"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="domain" description="PG_binding_1" evidence="2">
        <location>
            <begin position="406"/>
            <end position="463"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC50172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="474" mass="52431" checksum="DA4B7801FDEAB881" modified="2016-01-20" version="1">MRVVTRSIPLPVLVSSVLGLALLVALVAARPGREVPLDVPSAARATPVVPVLPWQQQQPPPTTPKAPAAHAVAAHGWSGYAFDACRAPSQRAMDRWRRSSPFTGVGIYLGGVHRACPQRHLSRAWVARQVRSGWRLLPIWVGPQASCTGYEHRISQRPGFAGRYLAARARGVLEARRAVRAARALRVPRTQVIFYDIEPFDVGRRHCRRSSLAFLEAWTRELHRYGHRSGVYSHVSSGISLLSRTKRSYARPDVVWYAYVDRVGTMPARYVGSPAFMRASRVHQYALDTRVDFGGVRMDIDWNYVSLGATAPASAPAGCDQLAARVRARPVARGARGPLVRVLQCLVLPGRPHPLKTSGRFDESTLRAVRGFQRRHGLVATAAVDRRTWTALLARGATPVLRTGARGESVRRLQRSLNMAAGRRVLRVDGDYGRTTARAVRHYRARLGLGAKGVANRHVWRALGRGVVLPVRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYS9</accession>
    <name>A0A0Q8UYS9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20925</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896076.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46306">
        <property type="protein sequence ID" value="KRC46306"/>
        <property type="gene ID" value="ASE19_20925"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2071387at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025597">
        <property type="entry name" value="DUF4345"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14248">
        <property type="entry name" value="DUF4345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="117" mass="11209" checksum="A8234DCA0A0046EE" modified="2016-01-20" version="1">MNPLIATGAAAYAGLGLVSFLKPGVVPAIIGSTAPNADSRTEIRAVYGGLPLAFAATLAASPASGTAIGVATAGMAAGRAGSALFEGRPSAKMAGFVLLEAAVAGALLLGARQARSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYX3</accession>
    <name>A0A0Q8UYX3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46087">
        <property type="protein sequence ID" value="KRC46087"/>
        <property type="gene ID" value="ASE19_19610"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2006089at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="161" mass="17618" checksum="5FA713A7BD8491C6" modified="2016-01-20" version="1">MSPVRAPSQPPFPLGVLFVLPTLAFWGLIIVGTNRDGGRHAGTYAAWAFGVAGVTLAVFAVLKVRQVRARNAEKRRATEEGVRTTARIVCTRVRGHLNQDPYVVFELEVTPETGERYRVSVTELVSQLAIPRIQPDTVLDVHVHPDDRAFVVIDPAGLGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V008</accession>
    <name>A0A0Q8V008_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Site-specific DNA-methyltransferase (adenine-specific)</fullName>
            <ecNumber evidence="2">2.1.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_21410</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyadenosine in DNA + S-adenosyl-L-methionine = an N(6)-methyl-2'-deoxyadenosine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:15197"/>
            <dbReference type="Rhea" id="RHEA-COMP:12418"/>
            <dbReference type="Rhea" id="RHEA-COMP:12419"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90615"/>
            <dbReference type="ChEBI" id="CHEBI:90616"/>
            <dbReference type="EC" id="2.1.1.72"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056918003.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46391">
        <property type="protein sequence ID" value="KRC46391"/>
        <property type="gene ID" value="ASE19_21410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1206955at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012327">
        <property type="entry name" value="MeTrfase_D12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02086">
        <property type="entry name" value="MethyltransfD12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00505">
        <property type="entry name" value="D12N6MTFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="4 7" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359572" description="Site-specific DNA-methyltransferase (adenine-specific)" evidence="6">
        <location>
            <begin position="22"/>
            <end position="354"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="354" mass="38685" checksum="5E0088947A9F29A5" modified="2016-01-20" version="1">MTLKYLGSKRVLVPVLGELFAASGATTALDLFTGTTRVAQEFCRRGAHTTAVDLSTYSEVLAQCYVEVDAATVDRDEVADALDHLASLAPVRGYVTETFCEASRYFHPRNGVRIDAIREGIDEHYGDSPLRPVLLASLLAAADAVDSTVGVQMAYLKKWAPRALNDLRLRVPAFTPGTGRAVRGDATELVHELPAVDLAYLDPPYNQHRYFTNYHVWETLVRWDRPEHYGVACKRVDSRDPATKSVFNAKREMPAALAQTIKSVNADVVVVSFSNEGYVPLADLIEMCHARGNPVEVLAFDSKRYVGALIGIYSPSGDKVGNVSHTRNTEYVLLSGDADRIGAMAEQVLHGASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V076</accession>
    <name>A0A0Q8V076_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Carbonic anhydrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_17650</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the reversible hydration of carbon dioxide to form bicarbonate.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the beta-class carbonic anhydrase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893822.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48755">
        <property type="protein sequence ID" value="KRC48755"/>
        <property type="gene ID" value="ASE19_17650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1841447at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004089">
        <property type="term" value="F:carbonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001765">
        <property type="entry name" value="Carbonic_anhydrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036874">
        <property type="entry name" value="Carbonic_anhydrase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43175">
        <property type="entry name" value="PTHR43175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00484">
        <property type="entry name" value="Pro_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00947">
        <property type="entry name" value="Pro_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53056">
        <property type="entry name" value="SSF53056"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00024993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC48755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="164" mass="17728" checksum="CC288D05BBBAC8EF" modified="2016-01-20" version="1">MGDFDDLLKANQDYAETFDQGGFDGKAHAGVAIVTCMDSRIDPLRMLGLDYGDAKIFRNPGGRVTEAALEALVLGAHLLNVDRILVIPHTRCAMAANSEADIHEKIGAAVGHDVSWHAFHVIPDQKVALAEDVRKVRSHPLIPDSVKVGGFIYDVDSGLLTQEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1Q7</accession>
    <name>A0A0Q8V1Q7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896473.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51406">
        <property type="protein sequence ID" value="KRC51406"/>
        <property type="gene ID" value="ASE19_15065"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1967255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="216" mass="22477" checksum="EB915A55738A0480" modified="2016-01-20" version="1">MTELDDLTQRLHRLEATAPDATDETVRRDVLRARGASRRRTLRRATAGLGVAAVTAVGVTIAVGADQGRTPVPPAVAQPSESADGAVELVAYTGAQQPGFVVTKVPAGFVLEGATPYNLNVARAGDDSGLDVFSDKLVVMLESSSVTSAPEGRPVRVGDHDGWLRSAEGGTQVLTYDDGDHRVVVQAWSTLGLSDDQVVEFAEGVTVTAEAQAGVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1W3</accession>
    <name>A0A0Q8V1W3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADPH-dependent FMN reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896512.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51446">
        <property type="protein sequence ID" value="KRC51446"/>
        <property type="gene ID" value="ASE19_15295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="796211at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN_red" evidence="1">
        <location>
            <begin position="7"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="167" mass="17604" checksum="545F25290654AE62" modified="2016-01-20" version="1">MSTVHTAVVVGNPKPASRTLTAALHLHRELVDREPDLVVDVATLGAGLVDWTDATIDALVAEVGRADLVVVACPTYKATYTGLLKLFLDRFAAGQLRGVAVPLMLGGGPAHALAPEHGLVPLLSHLGAVVPGSALYVLDKQYDDPAAYADWLARSRPVVEKLLRSDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V267</accession>
    <name>A0A0Q8V267_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14970</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896458.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51391">
        <property type="protein sequence ID" value="KRC51391"/>
        <property type="gene ID" value="ASE19_14970"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1768101at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036182">
        <property type="entry name" value="PCuAC_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110087">
        <property type="entry name" value="SSF110087"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359648" evidence="2">
        <location>
            <begin position="22"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="156"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="163"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="202" mass="20449" checksum="328284219FA5F44B" modified="2016-01-20" version="1">MPHLRPTAIAGLLLALVPAAATLSSCGFDYPTDRVNTIAGGENNREHSVDALGIRVLATAKGEGRLIGALSNNNAEPASLDAVSSPDGTVTASDFKKVDVEARGTVNLATLAPIALTGDFTAGDVVTLDLTFSTGETASLGVPVVKPCFQYTQVPAPHGDTAAADEDTAHAEESDAAEGHGEEGGDATYNCANEAPAPEGAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2B5</accession>
    <name>A0A0Q8V2B5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Nucleotide-binding protein ASE19_15840</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15840</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Displays ATPase and GTPase activities.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RapZ-like family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893873.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50089">
        <property type="protein sequence ID" value="KRC50089"/>
        <property type="gene ID" value="ASE19_15840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1603998at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00636">
        <property type="entry name" value="RapZ_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005337">
        <property type="entry name" value="RapZ-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30448">
        <property type="entry name" value="PTHR30448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03668">
        <property type="entry name" value="ATP_bind_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005052">
        <property type="entry name" value="P-loopkin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="14"/>
            <end position="21"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="65"/>
            <end position="68"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="289" mass="31589" checksum="6CDC5E43901DFDC9" modified="2016-01-20" version="1">MSESTPGQLVVVTGMTGAGRSTAAKELEDLGFFVVDNLPPNLLADVVRLVDESHGPAQPVAVVVDVRSGSFFQGLQSALALGVTGRDTTLVFLDATDEVLVRRQEAARRPHPLQQGGRLLDGLQRERVALADLRSEADLVIDTSNLNVHQLTDRVAEAFGNAETTRLRVSVISFGFKYGIPVDADYVADMRFLPNPHWVPELRPRTGQDAEVSSYVLARPGAEEFLDAYVPLLTGVAEGYLREGKRFMRVAIGCTGGKHRSVAMSEEITRRLVDRGYLARAIHRDLGRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V342</accession>
    <name>A0A0Q8V342_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19045</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893394.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48992">
        <property type="protein sequence ID" value="KRC48992"/>
        <property type="gene ID" value="ASE19_19045"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023833">
        <property type="entry name" value="Signal_peptide_camelysin"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04088">
        <property type="entry name" value="cognate_SipW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="201" mass="20455" checksum="CD69E5091921B65E" modified="2016-01-20" version="1">MSRHESRHRHERSRWFGRGRTRALLSVGLLLGAGAVATSAYWHDEATVDGASVQAGAIHIDLATNNKVKPETYVWSDLSGSIPATGGSVAKVLRVRNNSNGRLTFGYTVSATASGSLGAALKVTVLKGGSVSSSTCTGGTAVGTAGVSLNGFSASGGNLAATAATPYHDLCVQVTLPPSSGVGQLQSSNVVLTFNATQVIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5I9</accession>
    <name>A0A0Q8V5I9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Virulence factor Mce</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09720</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894638.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52700">
        <property type="protein sequence ID" value="KRC52700"/>
        <property type="gene ID" value="ASE19_09720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005693">
        <property type="entry name" value="Mce"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024516">
        <property type="entry name" value="Mce_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11887">
        <property type="entry name" value="Mce4_CUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00996">
        <property type="entry name" value="Mtu_fam_mce"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="31"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="domain" description="Mce4_CUP1" evidence="2">
        <location>
            <begin position="113"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="378" mass="40398" checksum="25B700928E4073DE" modified="2016-01-20" version="1">MNDARRLLPVAAVLLLLAAGVIWMVGSGGGTKTVTAYFPRAVSIYEGSDVRVLGVAIGQVDQVVPEGTQVKVVMTYDEDVDVPQDAQAVIVSPSVVGDRYVQLTPAFESGKKVMADNTVIKVQQTAIPLELDDIYASIDKLTVALGPEGANREGALTDLLEQTAKNFGGQGEEFHQTIEDFGKLSETLDNNKDDLFESAAQLEGFIKTLADNDGTVRSFNKSLGEVSSLLADERQELSTALSNLGTALGEVATFVKTNRAVLGRNIKDVNRVAKVLVRQREALDEILDAGPLAITNLYHTYNPKDATLDTNANIGNILHELTSDPKSVLCTLVSANDPKGELCGLIGKLLPRNAPFGTGSKFGQRTDPTLFGLVEAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5Y0</accession>
    <name>A0A0Q8V5Y0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893517.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50048">
        <property type="protein sequence ID" value="KRC50048"/>
        <property type="gene ID" value="ASE19_15620"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2063970at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359736" evidence="1">
        <location>
            <begin position="31"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="182" mass="18928" checksum="820850F0AC456A58" modified="2016-01-20" version="1">MNTSILRRKRVVLPALATVAVLAVGGTVWAASADDVSGAERDRVAAAAVDAAGGGTAVDVETSDDAGEAYEVEVRTADGAEVDVALDRDLGVVATERDDERDDERDDERWDRDADDRVLTAAERGSAGKAALAAVGTGTVVDVEASDDRGVAYEVEVRDAAGAEWDVDLAADFSVVAQHADR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V619</accession>
    <name>A0A0Q8V619_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CSD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_15790</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893548.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50080">
        <property type="protein sequence ID" value="KRC50080"/>
        <property type="gene ID" value="ASE19_15790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2034748at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04458">
        <property type="entry name" value="CSP_CDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012156">
        <property type="entry name" value="Cold_shock_CspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019844">
        <property type="entry name" value="CSD_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002059">
        <property type="entry name" value="CSP_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00313">
        <property type="entry name" value="CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002599">
        <property type="entry name" value="Cold_shock_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00050">
        <property type="entry name" value="COLDSHOCK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00352">
        <property type="entry name" value="CSD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51857">
        <property type="entry name" value="CSD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CSD" evidence="3">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC50080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="67" mass="7183" checksum="2A535A1B5231F620" modified="2016-01-20" version="1">MAQGTVKWFNDTKGFGFIAQDGGGADVFVHHTGIAGNGFKSLAEEQRVEFDVTQGQKGLQAENVRAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6C3</accession>
    <name>A0A0Q8V6C3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09740</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894641.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52703">
        <property type="protein sequence ID" value="KRC52703"/>
        <property type="gene ID" value="ASE19_09740"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="110"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="150"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="206"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="249"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="275" mass="28757" checksum="615438740B4934D3" modified="2016-01-20" version="1">MAGIKSIYEKPVKGLDTLGHELSFYLKVLLALPRSVMHYPREILRILAEVTLGSGALAVIGGTVGVIAGMTFFTGAQVGLSGYAALNQLGTAAFAGFVSAYFNTREIAPLVAGIALAATVGCGFTAQLGAMRISEEIDAVEVMAIPSMQFLVTTRVVGGLVAIVPLYVVGLLSSYVASRLVVTQFYGQSAGTYDHYFNQFLPPGDVLWSFGKVLVFAVVVILIHCYHGYTASGGPAGVGVAVGRAVRTSIVAINVIDLFLSMAIWGASTTVRLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6H1</accession>
    <name>A0A0Q8V6H1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15685</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893530.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50061">
        <property type="protein sequence ID" value="KRC50061"/>
        <property type="gene ID" value="ASE19_15685"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1724229at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="129" mass="14641" checksum="2C115ABA80EEB1BB" modified="2016-01-20" version="1">MRREPHENVATVLVDPALLPDLELELVELDLWVWPVRSAPICVDGPRTAFQVRRRLVEAQRGAWDCAAEWTPVWVSFGDRWASGDDPLPWAAHRALWDVLDAHADGVRFHRRLGGVRPLVAPVERRPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6L7</accession>
    <name>A0A0Q8V6L7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10305</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894732.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52799">
        <property type="protein sequence ID" value="KRC52799"/>
        <property type="gene ID" value="ASE19_10305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2089619at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041678">
        <property type="entry name" value="TetR_C_16"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17920">
        <property type="entry name" value="TetR_C_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="13"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="196" mass="20529" checksum="02D863AF6264E73D" modified="2016-01-20" version="1">MTAPARGRRRGSPDTRAAILAAARERFAVAGFGGTTIRAVAGAAGVDPALVHHYFGSKDDLFVAALELPVDPRAVLAEQVVGPLEGAGERLLRALLSVWDDPATQPALLAMVRRLVEPGGDALFREGFLPVVLLPLGQALGVAEPERRMPLVASQVIGIILLRYVVRADALVSLDADQVVATYAAVLDGFLAGPLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V715</accession>
    <name>A0A0Q8V715_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18305</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48871">
        <property type="protein sequence ID" value="KRC48871"/>
        <property type="gene ID" value="ASE19_18305"/>
    </dbReference>
    <dbReference type="OrthoDB" id="565681at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="390" mass="42403" checksum="7687C309030B61A1" modified="2016-01-20" version="1">MDMELLETAVQLWPGAEVVPAGSAADERPVRARYAVISRAHVPTVLVPVESAAAAGASLRRFSTASTWWDSTARAAAGAAVRAAPGLLRHRVEIRGGDDSLAQHLSAVLGTAVTFSITIGTARVNRKPVLQVFDDAGRCRAFAKVGWSDSTVADVLAEGAALARLGDIEFRHVVPPELLARTTWRGRPVLVTGPLQPSAWSRHRRAWDPPGVAMAELDDWFCEGERELVDSDWWCRRWEMAGEVGDPVSRGRLERAMEQVAVVAGERPVRFGAWHGDWTPWNMANAGQAVLLWDWERFATGVPSGLDPLHYVVNVLNAGAPVTADGIVWALALAAHHDRSVGGQPHVQSLLYLVEILARYLRLTHVAGGEHISERAMHTLVALERLTGLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V748</accession>
    <name>A0A0Q8V748_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_16010</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893879.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50349">
        <property type="protein sequence ID" value="KRC50349"/>
        <property type="gene ID" value="ASE19_16010"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1175086at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007343">
        <property type="entry name" value="Uncharacterised_pept_Zn_put"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30168">
        <property type="entry name" value="PTHR30168"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04228">
        <property type="entry name" value="Zn_peptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC50349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="317" mass="33569" checksum="C32CD842999BD316" modified="2016-01-20" version="1">MRFNPKARLDQSRVRDVGSGGGGGGGLGGGGGMRLPIPTGKGGIGTLVVLVLLYVAAKALGIDAGLPGLGGATAYSPARLSDAQQGSDRYADCKTGEDANNNADCARVAVENSLTDYWDSELGGKFHPEEAVITFTGSVDTGCGAAGSDVGPFYCPTDETIYLDTTFFDDVYEDQLGGQDAPFVEAYVLAHEYGHHISNLLGFMTEASRRGQSGPQSGSVRLELQADCYAGLWANHATSTEDESGQKLLLDLNQQDIDEALDAAKTVGDDYIQKRSGGRVNQEAWTHGSSEQRQKWFMVGYEQGSLDACDTFAVDRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V777</accession>
    <name>A0A0Q8V777_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 9">Urocanate hydratase</fullName>
            <shortName evidence="9">Urocanase</shortName>
            <ecNumber evidence="4 9">4.2.1.49</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">Imidazolonepropionate hydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">hutU</name>
        <name evidence="13" type="ORF">ASE19_18790</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the conversion of urocanate to 4-imidazolone-5-propionate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>4-imidazolone-5-propanoate = H2O + trans-urocanate</text>
            <dbReference type="Rhea" id="RHEA:13101"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17771"/>
            <dbReference type="ChEBI" id="CHEBI:77893"/>
            <dbReference type="EC" id="4.2.1.49"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
        <text evidence="9">Binds 1 NAD(+) per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Amino-acid degradation; L-histidine degradation into L-glutamate; N-formimidoyl-L-glutamate from L-histidine: step 2/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the urocanase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.49" evidence="4 9"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893353.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48951">
        <property type="protein sequence ID" value="KRC48951"/>
        <property type="gene ID" value="ASE19_18790"/>
    </dbReference>
    <dbReference type="OrthoDB" id="100619at2"/>
    <dbReference type="UniPathway" id="UPA00379">
        <property type="reaction ID" value="UER00550"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016153">
        <property type="term" value="F:urocanate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019556">
        <property type="term" value="P:histidine catabolic process to glutamate and formamide"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019557">
        <property type="term" value="P:histidine catabolic process to glutamate and formate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00577">
        <property type="entry name" value="HutU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023637">
        <property type="entry name" value="Urocanase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035401">
        <property type="entry name" value="Urocanase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038364">
        <property type="entry name" value="Urocanase_central_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023636">
        <property type="entry name" value="Urocanase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035400">
        <property type="entry name" value="Urocanase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035085">
        <property type="entry name" value="Urocanase_Rossmann-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036190">
        <property type="entry name" value="Urocanase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12216">
        <property type="entry name" value="PTHR12216"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01175">
        <property type="entry name" value="Urocanase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17392">
        <property type="entry name" value="Urocanase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17391">
        <property type="entry name" value="Urocanase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001423">
        <property type="entry name" value="Urocanate_hydrat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111326">
        <property type="entry name" value="SSF111326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01228">
        <property type="entry name" value="hutU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01233">
        <property type="entry name" value="UROCANASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0369">Histidine metabolism</keyword>
    <keyword evidence="7 9 13" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 9" id="KW-0520">NAD</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Urocanase_N" evidence="11">
        <location>
            <begin position="10"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="Urocanase" evidence="10">
        <location>
            <begin position="139"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="domain" description="Urocanase_C" evidence="12">
        <location>
            <begin position="349"/>
            <end position="543"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="408"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="51"/>
            <end position="52"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="175"/>
            <end position="177"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="241"/>
            <end position="242"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="262"/>
            <end position="266"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="271"/>
            <end position="272"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="320"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="490"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00031640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF17392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC48951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="563" mass="61387" checksum="1DC75BC882117109" modified="2016-01-20" version="1">MTEQNPRLPIHAATGTELTAKSWQTEAPLRMLMNNLDPENAERPEDLVVYGGTGKAARSWEAYDALVRTLRDLEDDETMLVQSGKPVGVWKTNKWAPRVLIANSNLVGDWANWEEFRRLEEMGLTMYGQMTAGSWIYIGTQGILQGTFETFAAVADKRFGGTLAGTITLTAGLGGMGGAQPLAVTMNDGVAICVDVDQSRITRRIEHRYLDVQADSLEHALELAVAARDERRGLSIGLLGNAAEVFPQLLEMKAPIDIVTDQTSAHDPLSYLPVGVPFEEWHQRAEADPAGFTKEAQASMATHVRAMVEFQDAGAEVFDYGNSIRDEARKGGYDRAFEFPGFVPAYIRPLFCEGKGPFRWAALSGDPADIAATDKAILELFPDNERLHKWIGMAQERVHYQGLPARICWLGYKERHLAGLKFNEMVRSGELKAPIVIGRDHLDCGSVASPYRETEAMLDGSDAIADWPLLNAMTAVASGATWVSLHHGGGVGMGRSIHSGQVCVADGTELAAAKIEAVLTNDPGMGVIRHVDAGYDRAAEVAAERGVRIPMSEATRTEPARDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V799</accession>
    <name>A0A0Q8V799_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12440</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895105.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53178">
        <property type="protein sequence ID" value="KRC53178"/>
        <property type="gene ID" value="ASE19_12440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1875657at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359765" evidence="2">
        <location>
            <begin position="26"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="248"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="377" mass="39593" checksum="1EB5ADA75ACF4CA9" modified="2016-01-20" version="1">MGRWSALLAAALFLTACTTTGGSPASPDAPVVPVPPAQPAGGAYGRLMDADGNSVPGGAVTLTQPFDDNIVLLSVRLVSLGTFCLIPDAGLCPSAHGADVSDDGLWSVPADEVEEGKALSLGGRGLAPEGGLGAFTSVSVPNGRPPVHVPDIVLWQPEVRVAGNAVTWPALTGVPHGPRVRYDVYVVPDAGPGAVGDPEPVRVATGVRRTRAVVPGWQVEDEDYRVTVVASTRRGRAAYVYTAPSADGTGTSTPLSRGRPCSTDRGGRQVAAVGTCPLTDGDLVRHEQVRLRGECSVDRSSCRPPRHTRICVDLGRSQPVRRVVVRSPFDPADRVVEVSGDGRRFRDWRPGDAGRWVCVRSSRYGFSGAVLSEISAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7J6</accession>
    <name>A0A0Q8V7J6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Anthranilate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12650</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895671.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53208">
        <property type="protein sequence ID" value="KRC53208"/>
        <property type="gene ID" value="ASE19_12650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1786019at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044249">
        <property type="term" value="P:cellular biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005801">
        <property type="entry name" value="ADC_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019999">
        <property type="entry name" value="Anth_synth_I-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015890">
        <property type="entry name" value="Chorismate_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11236">
        <property type="entry name" value="PTHR11236"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00425">
        <property type="entry name" value="Chorismate_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00095">
        <property type="entry name" value="ANTSNTHASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56322">
        <property type="entry name" value="SSF56322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chorismate_bind" evidence="2">
        <location>
            <begin position="159"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="243"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="252"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="430" mass="46686" checksum="AE6119E8C0B41B8C" modified="2016-01-20" version="1">MVTQGDPVEAFARLQARHDRCVWLDGGGARDWSRRRSLLGWLDEDDVSLSYDARTREVTRHAGGRSTVVGDDPFTVLEAELAAGRPTDQWFGYFGYAARPDLPAEPDPDLPDAVWLRPSNIREYEHQVVDLSSRLLPVATVNNRRNPRSGGDSDTLPPDYAAAFSTVQEHLHAGNSYEVNLTYRTRTPSALSPAAAYLRLRSVNPAPYAGFLQHDVPGARAWLLSSSPERYALVTEDRTLETKPIKGTTPRGTTPEEDEEARAHLAGDPKFRAENLMIVDLLRNDLAMVCEAGSVEVPVLMEVESYASVHQLVSTVRGRLRDDVSTVGALKALFPAGSMTGAPKLRTMEIIEEVEGTPRGAYSGAFGWVSGDGRADLGVVIRTLVTAGDDYLLGTGGGITVASDVVEEYAETGWKAARLLAAVSPQADQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7L1</accession>
    <name>A0A0Q8V7L1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_17030</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50369">
        <property type="protein sequence ID" value="KRC50369"/>
        <property type="gene ID" value="ASE19_17030"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="1"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="132"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC50369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="201" mass="21721" checksum="014644CDFAEFA971" modified="2016-01-20" version="1">MIRRGIRDLLESEGDIVVVGESDSAAEATRRIPALRPDVAILDGRLPDGSGIDVCRDVRSQDPSIKALILTSYDDDDALFSAIMAGAAGYVLKQVRGNDLLDIVRRVAAGQSTLDPSVTAQVLDRIRSGPPVNKELESLTDQEGRILDLIGQGMTNRQIARELHLAEKTVKNYVSSMLAKLGMSSRTQAAIYAVKNPPRPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7S0</accession>
    <name>A0A0Q8V7S0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Rhomboid family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_13380</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895800.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53338">
        <property type="protein sequence ID" value="KRC53338"/>
        <property type="gene ID" value="ASE19_13380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2053476at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022764">
        <property type="entry name" value="Peptidase_S54_rhomboid_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035952">
        <property type="entry name" value="Rhomboid-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01694">
        <property type="entry name" value="Rhomboid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144091">
        <property type="entry name" value="SSF144091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="180"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="204"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="231"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="255"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="279"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="domain" description="Rhomboid" evidence="6">
        <location>
            <begin position="137"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="308" mass="32697" checksum="5B4AF75C5300BF6E" modified="2016-01-20" version="1">MTNPPVGVPTCYRHPDRETWIRCQRCERPICPDCMKDAAVGFQCPSCIAEGRKTVREARTAYGGVISANPGATSAVLIGINVLVWLAIVASGGNDSPVVAWLSVHLWGVCQDGDAQYYLAQQFCEAGASSTWIPGLHDGAWWQLVTGSFTHVEPWHIGMNMLALWQLGPIVERLFGRGRYLALFLVSSISSTLAAYWLSGEYTFTVGASGVIFGLLAACLVAAWRSGADLSIFRTTIILAVVISILPGVSWQGHLGGFVGGAVAAAILVFAPRGQHRSWVQAGGLTVLSVLMLAGVALRVATLGSLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V874</accession>
    <name>A0A0Q8V874_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ornithine cyclodeaminase</fullName>
            <ecNumber evidence="1">4.3.1.12</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16085</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.1.12" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893598.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50130">
        <property type="protein sequence ID" value="KRC50130"/>
        <property type="gene ID" value="ASE19_16085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1193876at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008473">
        <property type="term" value="F:ornithine cyclodeaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003462">
        <property type="entry name" value="ODC_Mu_crystall"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023401">
        <property type="entry name" value="ODC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13812">
        <property type="entry name" value="PTHR13812"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02423">
        <property type="entry name" value="OCD_Mu_crystall"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="344" mass="37187" checksum="796B72F8C0693718" modified="2016-01-20" version="1">MNVTFLDVPGMVRWVTARGVENIVRDLTTAIDADFARWQDFDKTPRVASHSPEGVLELMPTSDGVTYGFKYVNGHPKNPERGFQTVTAFGMLADVGNGYPLFLTEMTILTALRTAATSAMAARHLARPDSTSMAMIGCGAQAEFQALAFRAVLGINSLRIWDTDPAAMDKLERNAVRAGFDVHRASDAREACRGADIVTTCTADKANAIVLPHDAVEPGMHLNCIGGDCPGKTELDPRTVAASRVFVEYTPQTRIEGEIQRQAPDFPVTELWEVVQGRRTGRESAADVTLFDSVGFAVEDFSALRFVYDAVRADPDVATVDLVAEPADPKDLFAYATAAAVVGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8A0</accession>
    <name>A0A0Q8V8A0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidoglycan bridge formation protein FemAB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13895</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FemABX family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897071.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53432">
        <property type="protein sequence ID" value="KRC53432"/>
        <property type="gene ID" value="ASE19_13895"/>
    </dbReference>
    <dbReference type="OrthoDB" id="891566at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016755">
        <property type="term" value="F:aminoacyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044038">
        <property type="term" value="P:cell wall macromolecule biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003447">
        <property type="entry name" value="FEMABX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02388">
        <property type="entry name" value="FemAB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51191">
        <property type="entry name" value="FEMABX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="376" mass="41757" checksum="E063D17AA28B30CA" modified="2016-01-20" version="1">MPSVRPISPTEHRDFLTTLPSASFLQTPGWAAVKGEWRSESIGWFDDEGVQVGVALVLYRQLPKLKRFLAYLPEGPVIDWAGDDLAAWLDPMVAHLRKQGAFAVRIGPPVVTRRWTTAQVKEGIADAEVALLSQIPPAERNPVGARAVAQLHELGWRHQGVEGGFAAGQPQFVFQVPLRDADGAQLSEDDVLKGMNQLWRRNIKKAAKEGVEVTVGGRDDLAAFHELYVHTAQRDHFTPRPLRYFQTMYDALTADAPDRFTLWLARHDGDLVASTIAIRVGEHAWYSYGASSTEKREVRGSNAVQWAMIRDAIAHGAAVYDLRGITETLDADDLHVGLIQFKVGTGGEAVEYAGEWDMPVNRPLYKAFQLYLARRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8E4</accession>
    <name>A0A0Q8V8E4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Flagellar protein FliL</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_09310</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 8">Controls the rotational direction of flagella during chemotaxis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the FliL family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895148.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53596">
        <property type="protein sequence ID" value="KRC53596"/>
        <property type="gene ID" value="ASE19_09310"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2013803at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005503">
        <property type="entry name" value="FliL"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03748">
        <property type="entry name" value="FliL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="8" id="KW-0283">Flagellar rotation</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="22"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU364125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC53596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="142" mass="14962" checksum="F19A4EE55BAA4FB4" modified="2016-01-20" version="1">MAPNQAAPAVESPPGKGKGKTLIVGVLALAIAAGAGWYFFLKPSGSKEPEPGEVVPLEAIQVNLASGHYLRLGMALQLTTSAHEADGSKALDAAITVFSGLSVSEVNNTKTRGHLKDELETELDHLYHGDVMGVYFTEFVTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8T7</accession>
    <name>A0A0Q8V8T7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Iron ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_09880</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895158.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53606">
        <property type="protein sequence ID" value="KRC53606"/>
        <property type="gene ID" value="ASE19_09880"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="64"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="126"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="167"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="222"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="272"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="317"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="351"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="379"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="435"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="482"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="58"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="313"/>
            <end position="503"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="511" mass="53617" checksum="8FC75D357CC99BB1" modified="2016-01-20" version="1">MGTATARTTRATPALLLVGLAVAGLALVPLGYVLWTTAELGPGEAGEFLWRPRIGELLWNTSRLLVVGVLTSVVVGVAGAWVVERTDVPGRGWWHGLLCAPLAVPAFVNGFGWVSTTHAVQSFPGAVMVVTLSYYPLVHLPTVAALRRLDPAVEEVATALGKGPWQVFLRVTLPAISPAVLGGALLVGLHLLAEYGALQLLNYPTLTTAILQQYATVFNGPAATLLALVLVTFCLLLLGIEALLRGRRPRSRVGAGASREMVRIPLGRRRPVVLVALAGLVVWSLGVPLVALARWLVRGTSTGLETGELTSALGNTLLLAVLGGAVTTVAAIPVVWLAVRHRGWLTTTIERSVYTASAMPGIVIALALVTVSIRAVPDLYQTLALLVAGYLILFLPRAVVSVRGTFELVPPGLEEVARSLGCNGPEVARRVTLPLVLPGLASAAALVALAVSTELTATLLLSPIGTETLATKFWSDASSIEYGAAAPYALALIVLSIPSTWLLARLSTRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8Y6</accession>
    <name>A0A0Q8V8Y6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_13255</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53672">
        <property type="protein sequence ID" value="KRC53672"/>
        <property type="gene ID" value="ASE19_13255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1755994at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025828">
        <property type="entry name" value="Put_sensor_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13796">
        <property type="entry name" value="Sensor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="Sensor" evidence="3">
        <location>
            <begin position="15"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="HisKA_3" evidence="2">
        <location>
            <begin position="170"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="362" mass="38184" checksum="305C29D0DEA8E932" modified="2016-01-20" version="1">MTGYAALQVLLFVPVVVAFVLVVVSAALVVVWLGVLLLAGLLPVMRGLVGWHRTMSGRILGAPTTAPYLPLPGGPIANLQVRAADPMTWRDLLWMLWAMSVGFVVSLLAVVLLLGVVTWPVWWYGVGPLMRARACVDRALLTVGRTEHLERRVQALTESRAVVVDHSAAELRRIERDLHDGPQARLAAVSLHLGLADDLFESDPDAARRLINEARSTSSAALGELRDVVRGVHPPVLADRGLTGAVSALALDMALPVELALDVPDRLPAPVESAVYFTVAECLANAGKHAGADQTWISLRHADGVLRGEVGDDGRGGADPSTGSGLQGIAARLAAFDGILSVSSPAGGPTVVRWEVPCAPSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V923</accession>
    <name>A0A0Q8V923_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD(P)H steroid dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09530</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895151.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53599">
        <property type="protein sequence ID" value="KRC53599"/>
        <property type="gene ID" value="ASE19_09530"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1928091at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="320" mass="35187" checksum="C62F67A1093D3C2D" modified="2016-01-20" version="1">MRLLVTGASGFVGGRLVEMARAEGHEVFGIGRRRLDRDDYASVDLGRVAAADLPELPWQPDAVIHCAARATPYARRADYERDNVVATRTVLDWCARLGEPRLVHVSSSSVLYRDGDQLDLTEDTPLPADFANDYARTKASSERIVGTYGGSWVIARPRAVFGPGDTVLFPRIIAAAKAGRVPRLTGRTEPAVGDLIYVDNLADHLLQLARRPELTGVYHLTNAEPVEIQAMLLDVIARLGFDPPSREVSLTTAMRAATVLERTWRLLRLPGEPPITPYGVGVLSWSKTFVPDLMLRDLGAPKVSVAEGVDRFVAWQRENL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9Q0</accession>
    <name>A0A0Q8V9Q0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MarR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07115</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895283.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53851">
        <property type="protein sequence ID" value="KRC53851"/>
        <property type="gene ID" value="ASE19_07115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1744037at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023187">
        <property type="entry name" value="Tscrpt_reg_MarR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01117">
        <property type="entry name" value="HTH_MARR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="15"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="152" mass="16951" checksum="7391DBA9B87265C0" modified="2016-01-20" version="1">MTVTTSRADAMRELESEVGVLIRRIRRVIGERARAVHPELLPASYLMLSYVRDNGPVRASAIGQVFDIDKGAISRQVQHLIDLGLLDRSPDPEDGRATLLTASEDAVQRLEQVADDRRQHLADRLGDWSAEEMAAFTASLRRYNEALNEPGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAF2</accession>
    <name>A0A0Q8VAF2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08945</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895600.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54168">
        <property type="protein sequence ID" value="KRC54168"/>
        <property type="gene ID" value="ASE19_08945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="807474at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="57"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="414" mass="44157" checksum="E5E0E15917D3B651" modified="2016-01-20" version="1">MDVRRRLRKNWERVRTEPGLKKNVIVMALLLVLATAAGSWVLGNQRFTAPWADRFELAAEFEAVPGVAPGNGQEVRMHGVIVGQITDARVNDAGRAELVMSLDPGHPVYENARLVLRPKSPLNEMYVEIDPGAPPAAEVRSGETLPVTNTERPVQVDEVLGHLDDKARAALTSLLSEADVALASADRTLPAGLDETGDVLGDLRPVLTELEKRRGRLATLVTALSDISDAVATDDHRLTSLADGLSSTLGTVAGQSGDLDAALAQLPALAGRLQSSTRAVSRLTEQLDPTLRDVHAATSTLPKALDRVDSTVRRLRTTVKVARPTIADARPLVADLRPAVADLRSAMPVAARSTARLDPATAILVKYLPDLAAFFVNTHSLTSMRDANGGILRGLLMVNSTTVPSDVLVGLAKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAN4</accession>
    <name>A0A0Q8VAN4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">MlaD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_08960</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895603.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54171">
        <property type="protein sequence ID" value="KRC54171"/>
        <property type="gene ID" value="ASE19_08960"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1220078at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="3">
        <location>
            <begin position="49"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="403"/>
            <end position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="477" mass="49155" checksum="19E25DBD7AB39255" modified="2016-01-20" version="1">MSATQPTSHALRTVASRARVAVVVSVLLVLSGLVAVSLVNGDGDNRLMLRATFADASPLLEGNDVRLGGVKVGTIASMRIVEGGAEVTVELDRAALPVHRDARLTIRPVSLLGERYVELDRGSADAPVLTDGARLGLAQTGSSVDLDQVLNTLDDPTAEGLAALVGTLGEGLDGNGPEVQRALAALAPAMRDTRGMAQTLKQQNATLSALVDSLSKVAAGVADDNGKSLDRLVQASATILGRTRANEAAFRSLLQQLPSTMRTATSTLRQLEGTADAAAPTLRALRPTTSDLKDISKELLGFADAADPALAAANPVLEKADALVRNALPVARLLRQQSPAILSDVRSLDPLTRDLVGDFSAVMEFVRGWALATNGRDGLTHYFRAGLVLTEYSVTGLLPGGRLPTAGSPAAGSDDKQPRSSGAASPKPGGGLVPGLLGGVGNLLDGLLSPRTDRTGGVTGLTPRQESRALDLLLGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC20</accession>
    <name>A0A0Q8VC20_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Amino acid permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_04315</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056917936.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54712">
        <property type="protein sequence ID" value="KRC54712"/>
        <property type="gene ID" value="ASE19_04315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="527053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="32"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="60"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="103"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="143"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="171"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="208"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="249"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="295"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="353"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="384"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="415"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="450"/>
            <end position="473"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC54712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="487" mass="49951" checksum="0F10864FB74FD8EE" modified="2016-01-20" version="1">MATESLDTTAADGSPTAGVGRLAGGTLGTAQIVFFVIAAASPLTIVLSTGPLSLRVGGLGAPGVMLATGVVLLLFAAGFTAMSKHVTEAGAFYAYVTRGLGPTAGAGAAMMTMAAYGVCVIGFVGYIGVFAQGSLGAVFDIDVPWQVCSLVAAAVVAIVGYCQVDVGAKVLMVLVTLEVAVILVLIVAVLAQGGPESPSAAPLSPDNVFFASGTGTLFLLAFGAYIGVEGTAIYSEEAAKPERTIPRATYIAVGFLAVFYAVSFWVVIYGFGTKGALAEAQGDGFLDMVFAQADAFVGGALVTALRLLIVTSFLATIIAFHNACTRYMFSLGRSGMLPQALARTHPRMASPHCASAVLSVITFVVVALAMIVGLDPFLELGTWLYASGVIGVVAAQALCSISVVMFFLSDRRGHGVVRVVVAPLLGFIGLAIALYLMANNFSLLSGYTEFLPNAIMIGAMPAAFVLGAVLYRFRLGRSATGQRAEVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC74</accession>
    <name>A0A0Q8VC74_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_04710</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54780">
        <property type="protein sequence ID" value="KRC54780"/>
        <property type="gene ID" value="ASE19_04710"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1948290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008171">
        <property type="term" value="F:O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002935">
        <property type="entry name" value="SAM_O-MeTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01596">
        <property type="entry name" value="Methyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51682">
        <property type="entry name" value="SAM_OMT_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="23191" checksum="BF78AD37FA23E59C" modified="2016-01-20" version="1">MAPTPIDSTSWTFADTYVDEDDVLAAARARAAEVGVTPIGAGSGATLRFLASVLEARAVVEIGTGTGVSGVWMLRGMRPDGVLTTVDVEAEHQRLARESFKDAGVAPQRVRTIAGSALDVLPRLTDGHYDIVFADGDKREYGAYLSEALRLLRPGGVVAFDNALWHGRVADPAQRDEETVAVRDLVQQVAAAEGLVPVLLPVGDGMLLAKKEWVPESD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC91</accession>
    <name>A0A0Q8VC91_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TetR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05365</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894196.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54885">
        <property type="protein sequence ID" value="KRC54885"/>
        <property type="gene ID" value="ASE19_05365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047542at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="19"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="198" mass="20920" checksum="0D1411D577F589DC" modified="2016-01-20" version="1">MSKDLPLLAAEPTERSDAARNRRALLDAAADLMGGCGVAALTMDAVATRAGVGKGTVFRRFGSREGLMASLLNHREEEWQAGVISGPPPLGPGAPPMDRLIAFGASRLRLHLDQAALIEAAGRTWGENHAVLGFASMHVRLLLGQLGVPGNLNYLATALIAPLSVPVLRQQIDHGGMSEDQVLAGWTELVHRIVEGTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCH1</accession>
    <name>A0A0Q8VCH1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04800</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54795">
        <property type="protein sequence ID" value="KRC54795"/>
        <property type="gene ID" value="ASE19_04800"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="162"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="31385" checksum="9D28CB52EA9C270D" modified="2016-01-20" version="1">MGQRVVVRRLVHGETGPTGGPAFTDVLGVCTSWADGRCVVQPESGEPVAIPVTDIVSGKPVPPRPSVRQRVGVREAEARTGALWPDLERLPLGEWELRCQPSGATVLRKRANSCLAIGDPGVPLAEAAAQVREFYAARSRDPLIQLEAGSDVEAGLQELGWQPLGYGESELRLAAVSRVRRALPRQRHAPELAVTGARALATIGTGCDPLAEAQATIDGDWLGIYGLTVDPGHRRRGLATDVLSELLEWGAEQGALTVWLHVETANDAGLAFWDALGFTPHHTCRYYAPGPVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCP4</accession>
    <name>A0A0Q8VCP4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06100</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55013">
        <property type="protein sequence ID" value="KRC55013"/>
        <property type="gene ID" value="ASE19_06100"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2062491at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009097">
        <property type="entry name" value="Cyclic_Pdiesterase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55144">
        <property type="entry name" value="SSF55144"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="196" mass="20439" checksum="ADF3D419B96F3207" modified="2016-01-20" version="1">MEAMAMMLRAAFVLPGTVVEELRTLAGRLGALPGVRAEHCDHLDVRIALLGNVLADDARRLADAVAHELATVAVPVVRTGDLEVRPDGDVAIGLLGDVDVLADVARTVGRAAERIHIYVDRRSFQPAVVVASLGTQRPGSRVASFVGAIRPADVGAWPLDEIALIRTRWFAGGAVSEVVERVPIGSGSGAGDALGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCQ4</accession>
    <name>A0A0Q8VCQ4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">UPF0056 membrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_04940</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the UPF0056 (MarC) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894266.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54815">
        <property type="protein sequence ID" value="KRC54815"/>
        <property type="gene ID" value="ASE19_04940"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1323133at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002771">
        <property type="entry name" value="Multi_antbiot-R_MarC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33508">
        <property type="entry name" value="PTHR33508"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01914">
        <property type="entry name" value="MarC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00427">
        <property type="entry name" value="TIGR00427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="67"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="104"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="135"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="177"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC54815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="202" mass="21245" checksum="DB5C01F5ECC756D1" modified="2016-01-20" version="1">MVEHVLLVEVFVTLFVIMDPVGTVPIFLSLTAGRSPATARRAAWQAVAVSFLVITLFAFFGQQIFNYLHISLPALQCAGGLLLLLVALELLTGNEQEHVANGDANIALVPLGTPLLAGPGAIVATMLFVQDIDSWASGISVALGIIAVHLALWAAMRYSLPILKVIRESGVLLVTRIAGLLLSAIAVQLVADAVRAFIAGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCT8</accession>
    <name>A0A0Q8VCT8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_05485</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894174.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54907">
        <property type="protein sequence ID" value="KRC54907"/>
        <property type="gene ID" value="ASE19_05485"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1009891at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038750">
        <property type="entry name" value="YczE/YyaS-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40078">
        <property type="entry name" value="PTHR40078"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="118"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="173"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="227" mass="23782" checksum="2272F12C5BD731AA" modified="2016-01-20" version="1">MSTTTVQLADLGPITQLRAGKLPRRLVQLYVGLVAYGVSLALMVLGAIGLAPWDVLHSGVTKHVPITLGQAVVIFSFLVLLLWIPLREKPGLGTVSNALVVGFSADATLALFDAPDSLFARIPLMVGGIVLCGVATALYIGAQLGRGPRDGLMTGLARRTGLSIRLVRTGLEVTVVVIGLLLGGTLGIGTVAYALTIGPIAQWMMPWFLVDLGQVGGIPETDPELLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD03</accession>
    <name>A0A0Q8VD03_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_09095</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the NtaA/SnaA/DszA monooxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894526.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52589">
        <property type="protein sequence ID" value="KRC52589"/>
        <property type="gene ID" value="ASE19_09095"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1591714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01095">
        <property type="entry name" value="Nitrilotriacetate_monoxgenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016215">
        <property type="entry name" value="NTA_MOA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000337">
        <property type="entry name" value="NTA_MOA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03860">
        <property type="entry name" value="FMN_nitrolo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0288">FMN</keyword>
    <keyword evidence="4" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="3">
        <location>
            <begin position="31"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="219"/>
            <end position="222"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00033748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000337-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="451" mass="50137" checksum="33E364E38C339676" modified="2016-01-20" version="1">MASTRQIHLGAVPYGTGGPGSHTLWLDPEIPGDASVSIAWFIEIAQLAERGRFDLVFIVDSQFITPYSPPHYLNRLEPLTLLSALATQTSRIGLVGTATTSFNSPFNLVRRLGSLDLISGGRAGWNVVTTGDAGTATNYGLEEHYDYDTRYGRAQEFVELARALWDSYEDDAFVRDRESGVFLDRTKQHVLDHEGEHFKVRGPLNLVRSPQGHPVVFQAGDSDQGRDLGASVGEGIFTHAPDIPAGQAFYDDLKTRARTKFGRNPDELVIMPGIKVVVGDTDEEAREIEAFNNDRDHTFEAALEEFGRPFGWHDFTQYDLDAPFPAETLEHGRRSFFTQAKAVTERAVENGWTLRQTVEATRYFRKSEFVGSAATVADKLVEWWEARACDGFNVGVDHPANFRRFVDEVVPILQERGVFRADYEATTLRGHLGLPVPVNRHTAARAAAVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD27</accession>
    <name>A0A0Q8VD27_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">DNA-directed RNA polymerase subunit alpha</fullName>
            <shortName evidence="11">RNAP subunit alpha</shortName>
            <ecNumber evidence="2 11">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 11">RNA polymerase subunit alpha</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9 11">Transcriptase subunit alpha</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">rpoA</name>
        <name evidence="14" type="ORF">ASE19_06430</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 11">
            <text>a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homodimer. The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.</text>
    </comment>
    <comment type="domain">
        <text evidence="11">The N-terminal domain is essential for RNAP assembly and basal transcription, whereas the C-terminal domain is involved in interaction with transcriptional regulators and with upstream promoter elements.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 11">Belongs to the RNA polymerase alpha chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="2 11"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894473.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55064">
        <property type="protein sequence ID" value="KRC55064"/>
        <property type="gene ID" value="ASE19_06430"/>
    </dbReference>
    <dbReference type="OrthoDB" id="662686at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.120.12">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00059">
        <property type="entry name" value="RNApol_bact_RpoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011262">
        <property type="entry name" value="DNA-dir_RNA_pol_insert"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011263">
        <property type="entry name" value="DNA-dir_RNA_pol_RpoA/D/Rpb3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011773">
        <property type="entry name" value="DNA-dir_RpoA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036603">
        <property type="entry name" value="RBP11-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011260">
        <property type="entry name" value="RNAP_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036643">
        <property type="entry name" value="RNApol_insert_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32108">
        <property type="entry name" value="PTHR32108"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01000">
        <property type="entry name" value="RNA_pol_A_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03118">
        <property type="entry name" value="RNA_pol_A_CTD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01193">
        <property type="entry name" value="RNA_pol_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00662">
        <property type="entry name" value="RPOLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55257">
        <property type="entry name" value="SSF55257"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56553">
        <property type="entry name" value="SSF56553"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02027">
        <property type="entry name" value="rpoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 11 14" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="6 11" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0804">Transcription</keyword>
    <keyword evidence="5 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RPOLD" evidence="13">
        <location>
            <begin position="18"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="region of interest" description="Alpha N-terminal domain (alpha-NTD)" evidence="11">
        <location>
            <begin position="1"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="region of interest" description="Alpha C-terminal domain (alpha-CTD)" evidence="11">
        <location>
            <begin position="245"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="309"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="12">
        <location>
            <begin position="323"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00032524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00033070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC55064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="340" mass="36958" checksum="96E3172A5E6A691D" modified="2016-01-20" version="1">MLIAQRPSLSEETVDQFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGASVTSIKIDGVLHEFSTIDGVKEDVTEIILNLKGLVVSSEHDEPVTMYLRKSGAGDVTGADIAPPAGVEVHNPDLKIATLGDNGKLELELVVERGRGYVSAVQNKGADNEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLVIDVETKPSILPRDAIASAGKTLVELFGLARELNVEAEGIDIGPSPVDEQLAADLALPVEDLQLTVRSYNCLKREGIHTVGELISRSEQDLLDIRNFGAKSIDEVKAKLHEMGLSLKDSAPGFDPSAALANYSDDEDDDESFVEDEQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD59</accession>
    <name>A0A0Q8VD59_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09370</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894575.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52637">
        <property type="protein sequence ID" value="KRC52637"/>
        <property type="gene ID" value="ASE19_09370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007383">
        <property type="entry name" value="DUF445"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04286">
        <property type="entry name" value="DUF445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="194"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="217"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="430"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="455" mass="51472" checksum="8E298489D2A1F399" modified="2016-01-20" version="1">MREWSEIVEDVQTNWWIYAAMPFVAGLIGYFTKLVAIRMMFRPHQYKGIRPFGWQGIIPRRAAQMVEVLCETLTGRLVSTQDIVSKVDGKELAKRIDRPLRKEIARIVPLVAEEYQPAMWRMLPGPAQDLVVQRAQDTAVELVPKLVKKIQKNIDDVFDLQEMVTAEFLSDPDILESMFLDVGKLEFQFIRRSGLMFGFFIGFLQAALWAATHSPFVMPVFGLFIGWFTDWAALRLIFNPKEPTKYLFGLITWQGLFLKHRISVSQEYGTLIASRVLTSERVVRSMFAGPSRQKMVDLVAPLIQDAMRDELTDIEKHVRREFGRLAPPELEELGVGELTFGSVLGVFSNAVSRPVRQAAGVGLDIAQVGPMAQTTAEEFVAVLPDLLSNSFEYLDDRLQIEALMSEKMAQMTPEQFEGVLRPAFQADEKTLIAVGAVLGFLVGELQVFLVEHLSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD63</accession>
    <name>A0A0Q8VD63_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">RNA polymerase sigma factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_06350</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55162">
        <property type="protein sequence ID" value="KRC55162"/>
        <property type="gene ID" value="ASE19_06350"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000838">
        <property type="entry name" value="RNA_pol_sigma70_ECF_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01063">
        <property type="entry name" value="SIGMA70_ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 6" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="7">
        <location>
            <begin position="4"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4" evidence="8">
        <location>
            <begin position="104"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC55162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="162" mass="18405" checksum="48354221624483A1" modified="2016-01-20" version="1">MQVLYDEHASALWGFCLHLTSNDRARAEDVAQETMLRAWRNAAVLTESRGSVRSWLFTVARNIVIDEWRAQRGHREFASAEPPLQEASDDRTDELLLSWVVADALRQLSAEHRAVLVECYYRGRSVAEAARRLDVPEGTVKSRTHYALRALRLILEETGVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VE13</accession>
    <name>A0A0Q8VE13_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06405</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55167">
        <property type="protein sequence ID" value="KRC55167"/>
        <property type="gene ID" value="ASE19_06405"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1969650at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC55167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="129" mass="13430" checksum="82EBED0CDA0A1509" modified="2016-01-20" version="1">MWEAGTRPVGGALRLASALLITAAVLDLLLSEGLGLFYDLVFVTLCVGVALTVRASDFFPVGVFPPLAMFVVVLLLAISQPESVADPTDGVVQATVSGLSGHAVALALGYAACLALLVVRRQFVARHPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEF9</accession>
    <name>A0A0Q8VEF9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Adenylosuccinate lyase</fullName>
            <shortName evidence="10">ASL</shortName>
            <ecNumber evidence="4 10">4.3.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9 10">Adenylosuccinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_07885</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + fumarate</text>
            <dbReference type="Rhea" id="RHEA:23920"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:58443"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="EC" id="4.3.2.2"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="7">
            <dbReference type="Rhea" id="RHEA:23921"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>N(6)-(1,2-dicarboxyethyl)-AMP = AMP + fumarate</text>
            <dbReference type="Rhea" id="RHEA:16853"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:57567"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="4.3.2.2"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="8">
            <dbReference type="Rhea" id="RHEA:16854"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 2/2.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 10">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.2" evidence="4 10"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53987">
        <property type="protein sequence ID" value="KRC53987"/>
        <property type="gene ID" value="ASE19_07885"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00132"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00075">
        <property type="reaction ID" value="UER00336"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070626">
        <property type="term" value="F:(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004018">
        <property type="term" value="F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044208">
        <property type="term" value="P:'de novo' AMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019468">
        <property type="entry name" value="AdenyloSucc_lyase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004769">
        <property type="entry name" value="Pur_lyase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10397">
        <property type="entry name" value="ADSL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00998">
        <property type="entry name" value="ADSL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00928">
        <property type="entry name" value="purB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 12" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 10" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ADSL_C" evidence="11">
        <location>
            <begin position="371"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00030717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU361172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC53987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="478" mass="51766" checksum="7C824B0697ECF31E" modified="2016-01-20" version="1">MGEWATVTVPNVLATRYAAADLAEIWSPEHKIVLERQLWIAVLKAQKDLGIDVPDGVVEAYEKVVDVVDLQSIADRERITRHDVKARIEEFAALAGHEHIHKGMTSRDLTENVEQLQVKQSLALLRDRAIATLARLGRLAAEHETTVMAGRSHNVAAQATTLGKRFATVADELMIGVERIEQLLARYPLRGIKGPMGTAQDMLDLLGGDADKLTDLEQRVARHLGFDRVLTSVGQVYPRSLDFDVLSALVQLTAAPSNLATTIRLMAGNEIVTEGFKEGQVGSSAMPHKMNTRSCERVNGLAVVTRGYLSMVGELAGDQWNEGDVSCSVVRRVALPDAFFAVDGLFQTFLTVLDEFGAFPAVIQRELDRYLPYLATTKVLMAAVRNGVGREAAHEAIKEAAVGTALAMRQGQAENDVFAKLAADDRLGLTTEQLQSLVADPITFTGAAVAQTQEVCRQVAAIVAQNPAAAAYEPGAIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF12</accession>
    <name>A0A0Q8VF12_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Betaine-aldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09215</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894548.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52610">
        <property type="protein sequence ID" value="KRC52610"/>
        <property type="gene ID" value="ASE19_09215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="744602at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="2">
        <location>
            <begin position="32"/>
            <end position="485"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="499" mass="52997" checksum="6CDC7CC6E90F4F58" modified="2016-01-20" version="1">MSADRPEHIALVEGVEVDTRHWIGGQRVASADTFVDISPIDESVLAHVHAGTTTEVDAAVAAARAAFPAWAALSVKERSDILRAVADGIEARVEDLSLVETRDNGSLIRSHRRGVMPRVAMNFRAFADFAEHQLGHPDMEVPGRGHRERISYDPAGVVAVITPWNAPLMLASWRIGPALAAGNTVVVKPPEWAPLTASLLADIMHEAGVPAGVFNVVQGTGADAGAPLTAHPGINRLAFTGSVPTAGVIAKAAATNIVPLSYELGGKSPLLVFEDADLDLAVEIAVEQFDNAGQVCLKAARMYVHTSLAEEFTRRVVEGASQLVQGDPRDESTDVSALVARRHFEQVSGFVERAVADGARPLLGGGPNRELGGLYYRPTILVDARDDSEIMTEEVFGPVVTISTFETEEEAVAKANDTPFGLAATIVTGDRDRAERVSAALDAGTVWVNCFFVRDLNAPFGGNGKSGIGREGGIWSFDFYTDIKNSVFSPTGWTSGGDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG91</accession>
    <name>A0A0Q8VG91_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14055</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53457">
        <property type="protein sequence ID" value="KRC53457"/>
        <property type="gene ID" value="ASE19_14055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1851545at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="78"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="124"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="182"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="242"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="288" mass="29891" checksum="FD9C047E0A401B5C" modified="2016-01-20" version="1">MTVPFDVASPRHGHDEEHDMSNFEPPAPPPPPGGHGAPPPPPAGGYGGPPPGGPDNWDVGAAVNYGWTKFQANVGQMILAALAIFAGAVLIYGIAFFAIIIPAGDSDYSCSFNDAGEYACSGDNGGLGILSLIVLALLYVVFFIYAQVIGAGLIREGLGVTEGRSFTTAGVFKFENIGNVIVTSLLVGVGTFIGTILCVLPGIIFGFLTMFSLFFVVDKNLAPVDAIKASIELVRNNIGSTIIWYLVAYVIALVGAVLCGVGLLVAIPVILVGTCYTYKKLSGQPVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGN6</accession>
    <name>A0A0Q8VGN6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_09680</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895153.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53601">
        <property type="protein sequence ID" value="KRC53601"/>
        <property type="gene ID" value="ASE19_09680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1308416at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="4">
        <location>
            <begin position="5"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="Nudix hydrolase" evidence="4">
        <location>
            <begin position="150"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="294" mass="31814" checksum="5626222CB43FF35D" modified="2016-01-20" version="1">MGQRVQRLAAYAVIVRGDQILLSRLSEKVTRKELWSLPGGGVDHGEDPRDAVVREVYEETGLHAEVDGTTHVYSLHVADSWRRGRRVDAHSVRIVYEGWVPADAPEPHVTEVDGSTAEAAWKPIADVLDGTVPTVGLVGEALASYRIRQRQRTAAYAYVVRDDAILLTRTSDLAPDPGTWHLPGGGIDHGETPTDTIRRELWEECGLEGAATELLTVLDHHFTGTAPNGRAEDFHAIGIIYRAEVGPGEPRVVEEGGTTDEVAWVPLADVAAGRLKVYGSVRAAIEAAGDTVQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH48</accession>
    <name>A0A0Q8VH48_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Haloacid dehalogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_02990</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56798">
        <property type="protein sequence ID" value="KRC56798"/>
        <property type="gene ID" value="ASE19_02990"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00413">
        <property type="entry name" value="HADHALOGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="246" mass="27031" checksum="E22F17D46C50A407" modified="2016-01-20" version="1">MVEVRAQRASKPVEAVIFDWGGTLTAWHDIDFHAESLALAQAVLATPDTSDDHHAHAARLHSAGSVVWGRSRDHQQSATIADLFTEAGLDHDPDLLEAYYGFWEPHTLTDPEVAPLFSWLRAEGIKVGVLSNTIWPRAWHRGFFERDGVLELIDGDVYTSEIPWTKPSPRAFGAAMEAVGVSDPAACVYVGDRLFDDVWGAQNAGLRAIHVPHSDIPAEQVGHTEGDPDAVAHRLSEIPDLIAPWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHC3</accession>
    <name>A0A0Q8VHC3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cell division protein FtsW</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_02370</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56692">
        <property type="protein sequence ID" value="KRC56692"/>
        <property type="gene ID" value="ASE19_02370"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1133883at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013437">
        <property type="entry name" value="FtsW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001182">
        <property type="entry name" value="FtsW/RodA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30474">
        <property type="entry name" value="PTHR30474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01098">
        <property type="entry name" value="FTSW_RODA_SPOVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02614">
        <property type="entry name" value="ftsW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="43"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="84"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="108"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="185"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="219"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="305"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="335"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="371"/>
            <end position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC56692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="418" mass="44833" checksum="5D9DC9ACDB205384" modified="2016-01-20" version="1">MTTANPEKFRFHLPQRLAVRPRVRRPGWTATLKDALDRPLTTYYLLLGATALLLTIGLIMVLSASSVYAFRETGDSYTVVRRQVMWVVLGVPCAFIASRVSTSWVRGLSYPAFGISLLLLVLTAFVGVEANGNTNWLALGPVQIQPSEIAKLSLVIWASNIYANKDRRLGSLHQMLVPVVPGMGLATALVVVGHDLGTALVFCALLVAMLWVVGAPAKLFSLAILVVGTAALGLATTDSERLQRLTNFTDPFKDYGNAGWQPAHGLYALASGGIFGEGIGASQQKWGQLPEAHTDFIFAVLGEELGLVGTLLVISLFLVIAYAGLRVARETKDPFVRYCSFGIVVWLLGQMMINVGMVLALLPVIGIPLPLVSYGGSSLLPTLAALGLVIGFARREPAAARALKQRRRARSAGLSARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHE2</accession>
    <name>A0A0Q8VHE2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_02505</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892733.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56715">
        <property type="protein sequence ID" value="KRC56715"/>
        <property type="gene ID" value="ASE19_02505"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1719670at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="160" mass="17896" checksum="F11949D13954AB62" modified="2016-01-20" version="1">MAGHIIHVHTTIPAPPEQVWDVITDIAHADTVLRSVSESELLTEGGYDVGTSWRERRTLFGHHGPERLQVVESEPPLRTVVEAEVGDDVIRTAYRLTPAGPDRQRTRLAMTTTVEMSHRSPVSRAIWAVFGGFSYDQSRKVLEHDLEDIEAEACRRAMTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHJ9</accession>
    <name>A0A0Q8VHJ9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FAD-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01875</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892625.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56607">
        <property type="protein sequence ID" value="KRC56607"/>
        <property type="gene ID" value="ASE19_01875"/>
    </dbReference>
    <dbReference type="OrthoDB" id="504558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_3" evidence="2">
        <location>
            <begin position="4"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="375"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="395" mass="42723" checksum="2BA01BC26AB72BA1" modified="2016-01-20" version="1">MTEIKVLVSGASIAGPALAHWLHRRGATVTVVEQATGLRPGGQAVDARGVAKEVIRRMGLDAAVRAACTDTKGAYSVDAEGNVLETYRADDNDGDGYVSEIEILRGDLAQLLYDDTSPQVEYLFDDRITELTQDADGVDVVLASGERRRFDIVVGADGLHSSLRGMVFGPREEFVRHLGLVLAFFTVPNEFGLDGWMYDHQEAGRWAGLRPVPDDSQAIAMLSFPAPDFAIDHRDLDAQKRLLHEQMAGFGWKTSRILAHVDDAPDFYLDQVAQVVMDDWSRGRVGLIGDAAFCASPMSGAGTGLAMVGAYLLAGELAAAGWDPAAGFAGYRERMRDYVDANQEIGRMHVDMLTATEPGPEPDMEAMNSLIERAVNGPDLPSYDGLPDTGPLTRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHZ5</accession>
    <name>A0A0Q8VHZ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07870</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895415.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53984">
        <property type="protein sequence ID" value="KRC53984"/>
        <property type="gene ID" value="ASE19_07870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1562645at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007138">
        <property type="entry name" value="ABM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03992">
        <property type="entry name" value="ABM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51725">
        <property type="entry name" value="ABM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABM" evidence="2">
        <location>
            <begin position="3"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="105" mass="11368" checksum="E6E11CF26374096F" modified="2016-01-20" version="1">MSVVKINAIQVPPNAGPELEKRFAARAGAVEGSPGFLGFQLLRPTAGEDRYFVVTHWADEESFAAWRDGQGRAAHAEQPGEPQRRPVATGADLLEFEVVLDVKPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI10</accession>
    <name>A0A0Q8VI10_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Cytochrome aa3 subunit 3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">ASE19_02765</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <reference evidence="10 11" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the cytochrome c oxidase subunit 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57036">
        <property type="protein sequence ID" value="KRC57036"/>
        <property type="gene ID" value="ASE19_02765"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004129">
        <property type="term" value="F:cytochrome-c oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019646">
        <property type="term" value="P:aerobic electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024791">
        <property type="entry name" value="Cyt_c/ubiquinol_Oxase_su3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000298">
        <property type="entry name" value="Cyt_c_oxidase-like_su3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035973">
        <property type="entry name" value="Cyt_c_oxidase_su3-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013833">
        <property type="entry name" value="Cyt_c_oxidase_su3_a-hlx"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11403">
        <property type="entry name" value="PTHR11403"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00510">
        <property type="entry name" value="COX3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81452">
        <property type="entry name" value="SSF81452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50253">
        <property type="entry name" value="COX3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="46"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="88"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="126"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="171"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="domain" description="COX3" evidence="9">
        <location>
            <begin position="1"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00031400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KRC57036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="191" mass="21361" checksum="0913572644CE9DAA" modified="2016-01-20" version="1">MAVGTIIWLSSELMFFAALFASYFTIRSVSPEMWSENTDLLNVPFASINTTILVLSSFTCQFGVFAAERGQVGRAGTLLQIGKWGLREWFILTYVMGAIFVGGQALEYAELIHEGVTIPHDGYGTMFYLTTGFHGIHVTGGLIAFLFVLGRTYVARRFTHEQAVSAIVVSYYWHFVDVVWIGLFATIYLIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI19</accession>
    <name>A0A0Q8VI19_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_06225</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894443.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55033">
        <property type="protein sequence ID" value="KRC55033"/>
        <property type="gene ID" value="ASE19_06225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1832232at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="42"/>
            <end position="49"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC55033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="261" mass="28363" checksum="9D8B50DA8F1A3EE2" modified="2016-01-20" version="1">MGTGIHVSGLTKTFRAGRHRVVPALEGVDLHTEQGSFLALLGPSGCGKSTILRILADLEHPSSGTAQVDGRTPVELRRDSELGIAFQDHALLPWRSVTKNIRLPFEVAGRDVDKGYVDELIALVGLRGFEDAKPAQLSGGMRQRVSIARALALKPSVLLLDEPFGALDDMTRQNLNLELLRIWTEKPATTLLVTHGISEAIFLSDQVAVMSPRPGRIKAIIDVDLPRPRTPEMMRTPEFHALVDRASELLFGADGRAGAES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VI91</accession>
    <name>A0A0Q8VI91_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">30S ribosomal protein S14 type Z</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5 6" type="primary">rpsN</name>
        <name evidence="5" type="synonym">rpsZ</name>
        <name evidence="6" type="ORF">ASE19_06520</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 30S ribosomal subunit. Contacts proteins S3 and S10.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the universal ribosomal protein uS14 family. Zinc-binding uS14 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_011757321.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="SMR" id="A0A0Q8VI91"/>
    <dbReference type="EnsemblBacteria" id="KRC55081">
        <property type="protein sequence ID" value="KRC55081"/>
        <property type="gene ID" value="ASE19_06520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2032609at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.830.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01364_B">
        <property type="entry name" value="Ribosomal_S14_2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001209">
        <property type="entry name" value="Ribosomal_S14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043140">
        <property type="entry name" value="Ribosomal_S14/S29"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018271">
        <property type="entry name" value="Ribosomal_S14_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023053">
        <property type="entry name" value="Ribosomal_S14_Z"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19836">
        <property type="entry name" value="PTHR19836"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00253">
        <property type="entry name" value="Ribosomal_S14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00527">
        <property type="entry name" value="RIBOSOMAL_S14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="2 5" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="5">
        <location>
            <position position="24"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC55081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="61" mass="6968" checksum="D4771421F6EF3603" modified="2016-01-20" version="1">MAKTALKVKAARKPKFAVRGYTRCQRCGRPKAVYRKFGLCRICLREMAHRGELPGVTKSSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIN3</accession>
    <name>A0A0Q8VIN3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08660</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895653.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54221">
        <property type="protein sequence ID" value="KRC54221"/>
        <property type="gene ID" value="ASE19_08660"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1275789at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12680">
        <property type="entry name" value="SnoaL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="2">
        <location>
            <begin position="6"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="396" mass="41828" checksum="5CC701E840303111" modified="2016-01-20" version="1">MRQSLVEGMYDALAAGDRDAIVAFLADDFVGRLTPGLPFGIGGEHAGPAAMVRDGWFAIGTHWRVRAEPASYTTLQDGRLQVQGTYRGRGRASGLAFEAWFVHQWELRDGRICGLTQLTDSAAFVGALGEPPASFETLDLTIDDGLATLCLARPAERNAIDQRLADEFLAAVVRVAGDPSVRALLIAGDGPALTVGGDIPYFTSTAATEGLGPTLRQMTTPFHLAFQVLATLDVPIVAVAHGAVAGGGLGFVYAADVVVAADDARFVTAFAAIGLSGDGGGTWHLPRLIGPARAARAYLLNEPITAQQALDWGMVAEVVPAAEARARGEELAQRLAHGPTRAFSRMRALLRESWDRSLPDQLGAEVESLVACAETADAADALDAFLAKQRPTFRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIN5</accession>
    <name>A0A0Q8VIN5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_09005</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895609.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54177">
        <property type="protein sequence ID" value="KRC54177"/>
        <property type="gene ID" value="ASE19_09005"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="19"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="136"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="243"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="406" mass="43997" checksum="E80A9814657D3996" modified="2016-01-20" version="1">MTVARTQDRMSHDVFLPAEIVELRARARASVAKHVAPVAREIGSREESVDSFPWDAFRGLASDGLFGIPFGEPYSTIEHPMLGVCTVAEEIAYESSSLAGVYDGQCILVPATLAHATPAMRERLVPDLVSGQQAFAFATTEPETSSDLTATRLGTWAEETVDGWVVNGRKRWITNSVVAGWVSMLVRAGRDGERAHMLLIDLSSPGVRIGTPDLKMGHRGQITADIVLEDVHVPRECLLGEPGGGMAVALGALVRGRIGIGAAGVGVAQAALDLAVHRLQTREVFGRPLGAMQHWQFQMAQRATELECARSLYQKAAILLDRGDRTAEPEAAMAKAYGTRLANDLVREAIQVHGAVGFARQVGETGESVRLEEMYRDAKILEIFEGANELQQWIVARRLIGRDITG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJ42</accession>
    <name>A0A0Q8VJ42_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07265</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895306.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53874">
        <property type="protein sequence ID" value="KRC53874"/>
        <property type="gene ID" value="ASE19_07265"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1986612at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="176" mass="18772" checksum="BC8F23B56D8A130A" modified="2016-01-20" version="1">MSTSLDLRAVIADVVREVVADLAGPTTAAHAAPPYAAAPAPPAVAAVSAPSQSTAGVAGSEHVSPPQLRERVEAVRITDDTDLDRFARHLLALFENPKNRQDLKAGRLRFRLEGGTTTVTAHDRPAQRIDTGAVTERQVKAAAESGRRLILGRRAVLTPLARERARALGVPIEKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKS6</accession>
    <name>A0A0Q8VKS6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05320</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894204.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54877">
        <property type="protein sequence ID" value="KRC54877"/>
        <property type="gene ID" value="ASE19_05320"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360135" evidence="2">
        <location>
            <begin position="28"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="249" mass="25543" checksum="2973710A108B00D2" modified="2016-01-20" version="1">MRHTTFLRTSVALVAATALLGACSDDADDDKAADQPSTSPATGPTTSPVADDDLPDGVRALPARAAGKDFVDLTAGRYRIDLGEGLSFDVDLPEGTSAHDDGLFLASGSAVLKVELAGREYGAPRDPCAGGILPSGAGVDALVDDLAGVPVYEVSEPEPVSLGGADGFYLEANSPEAYDASGCSSMGSLQLPSNPDTAVSAPPPYDGRWWVLDVHGQRVVVQQNCWDCSAAQLDAARPIPSTLAFTAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLE0</accession>
    <name>A0A0Q8VLE0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">PAP2_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_06080</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894065.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55009">
        <property type="protein sequence ID" value="KRC55009"/>
        <property type="gene ID" value="ASE19_06080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026841">
        <property type="entry name" value="Aur1/Ipt1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14378">
        <property type="entry name" value="PAP2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="34"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="90"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="132"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="240"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="domain" description="PAP2_3" evidence="7">
        <location>
            <begin position="71"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC55009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="291" mass="31357" checksum="7AE08F6E77946D1C" modified="2016-01-20" version="1">MGSTVTIASRPPAPRPPSSPSPDGPVARSRSRRIWSFLVEMGVLVGLFAAYNVIRAGWGDDPVAAMARAREIAQFEGGLFSSVELRLNEWIVGVPVLAVATCYFYALLHYAMTPTVLLLSRRRGGRRYWRGYWALVLASAIALVGYALLPTAPPRLMPELGTIDVMAHFADYGWWGSAASAPRGLGDATNQYAALPSLHFGWSLWCAVQLWGFGSLRWRVVAVAYPSLQVFAVLSTANHFIVDVVAGGACVVVAFVVVELVQRGVEAVRSARGVRRPAGGAPTPRARRAGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VM69</accession>
    <name>A0A0Q8VM69_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CHK domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08670</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895551.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54119">
        <property type="protein sequence ID" value="KRC54119"/>
        <property type="gene ID" value="ASE19_08670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1457558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015897">
        <property type="entry name" value="CHK_kinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004119">
        <property type="entry name" value="EcKL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02958">
        <property type="entry name" value="EcKL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00587">
        <property type="entry name" value="CHK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CHK" evidence="1">
        <location>
            <begin position="138"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="384" mass="42629" checksum="957DBC5C04334957" modified="2016-01-20" version="1">MLPTIATVRDAALGVAPWVPGHHRHGLDSLRPEEFTNALAGNVPGARVEDLRVEIDSRGTTDRARIHLAWNAAGRDAALPATAFAKGTSSQLAPRVIVSTFGCHTYETRFFQQIHPSVADLTIAPYVARSGSGGRYVLAFEDLALRDGGVTFYDADDDAPQEHAEAVVELLATLHGRFWRSPRFATDLSWLQTYAGRPGGGFMKHFFTWSEKKFMAQDRVVPEPVRRLTKDYVRNQGRLTRVWEAMPQTLCHGDTHLGNTFANADGSAGIYDWQVFHRMNGLRDFAYFLMHSIPTELRRAEEKSLLERYLRVLADSGAGSDVPSFAEAWDTYRLLTVDGWIAIVFTLAAGGMQPDDRMEVTAVRAINTLVDLDVEQAVRSAIRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN08</accession>
    <name>A0A0Q8VN08_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">TGc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_03590</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892916.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56899">
        <property type="protein sequence ID" value="KRC56899"/>
        <property type="gene ID" value="ASE19_03590"/>
    </dbReference>
    <dbReference type="OrthoDB" id="224125at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002931">
        <property type="entry name" value="Transglutaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01841">
        <property type="entry name" value="Transglut_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00460">
        <property type="entry name" value="TGc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="47"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="101"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="164"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="191"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="215"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="245"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="636"/>
            <end position="663"/>
        </location>
    </feature>
    <feature type="domain" description="TGc" evidence="3">
        <location>
            <begin position="517"/>
            <end position="583"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="577"/>
            <end position="626"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="577"/>
            <end position="595"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="822" mass="89009" checksum="52DFACC55F37D8A7" modified="2016-01-20" version="1">MTTVPPAGQPLGPRPSGPPVRDSSNSSSAPVMVVQQRKRGRRQLPPWWLAVVDTALVLGLGVLCAWPLGAAYSGSQWLVAVVVGLGVGVAVAWLGAWLRWGAWITTLAAVALYLLVGSAIVVPGRARNGFIPTADSLHDLVVGLVDAWRESLTLPAPLGESGTVMIVPLVTGLVGGLAAAVLLWRSRWPGAAGLVLALVLVLSSAFGDIRADAALARGLAIVAVGVIWLRWRSQRDVRVRWARRIGATLAVVGVAALAAGGLGAAGDTSAHRVVLRDHVDPPFDPRDYPSPLAKFRYYKKSDVRTDTTLFSVTGLESKMLVRLAVMDTYDGVVWNVSGGPDSVHDSGTFRRFRNDPDTELKATMHGQVTIGQYTGVWVPSVGETLSMTPIRDGSPDDTIASELVINRSTGTVAQIGGVRSGTTYQIDAVAPPTYSDEEIAVMVPDDSITLPRPAIVPEQLVDRVNRWEVEDKFGGGTGGELAIFLRDAFQSNGFYSDGIDDFTPSGHGASRLAVLTKTANPVGNDEQYAAAMALIGQEMGLPIRVVIGFEVPAGGGEVRGEDVHAWTEVKFKDHGWVPFKPTPPEDKKLRLPNDKPNEEPQPQVLQPPRIPGEPQEADDNLQQGDGERSNLDVLEVLLTVLAVLFDVLKVLLVTSPLWGILLYKFLRRRRRRRAEEPTAQLAGAWRELADRMRDLGVRPSPGATRRESAYAAADRYDVVPVVTLAHTADRHVYGGDAPSDEEASAYWADVDTALKRIRKATPWWRRVLARFSLASVPWRAGVEHGRDRAGRIGRRVAALGPVVRVRTAVRRVVRRIDPRRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPP9</accession>
    <name>A0A0Q8VPP9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05165</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894226.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54855">
        <property type="protein sequence ID" value="KRC54855"/>
        <property type="gene ID" value="ASE19_05165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1967752at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033437">
        <property type="entry name" value="DUF5130"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17174">
        <property type="entry name" value="DUF5130"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="119" mass="12675" checksum="D526746FE91A3277" modified="2016-01-20" version="1">MSTTALNATERAALDVTIRNAEQACRAEISVFVGAASGEPREFATSLHNTLVLPARSVLVMVDPDRRLVEIVTGGHVRERLTDDESAQAVAAMTERFAKGDLAGGLSRGIELLGELARD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPZ4</accession>
    <name>A0A0Q8VPZ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_00285</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896826.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59514">
        <property type="protein sequence ID" value="KRC59514"/>
        <property type="gene ID" value="ASE19_00285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="149255at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="185"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="212"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="244"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="291"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="320"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="375"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="533"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="557"/>
            <end position="581"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="593"/>
            <end position="614"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="635"/>
            <end position="655"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="661"/>
            <end position="683"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="7">
        <location>
            <begin position="235"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="7">
        <location>
            <begin position="564"/>
            <end position="690"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC59514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="715" mass="75305" checksum="8E32B39B4768CBCC" modified="2016-01-20" version="1">MFAALGRFVTRFRWYVIAAWVLLAVVVASFAPALESTQDNSEFLPDHYESIKALNLQEAEFSDAFSPGAILVVERKDGAKLTPDDQAEVATIAKGLGPELGTKTFQPTVITQGEDGKPNLSEDGTVMFAVIPLADGATGYDTQAIDDAKDLRKDIKELVGDSDLEVRATGAVPQSLDSQESSEDTLLIVAVATVVLIVGLLALIFRSVLICLLPIVVVAVVSSIATGAIAWANDIFDLKADSSVQQILIVVLYGVGTDYILFFLFRHRERLRQGAAVKDSVVHSLDRAGEAIASAGGAVIVAFMALILSSLSIFRAIGPALAIAVFVTLLAALTLVPAVVSLLGKALFWPSKSWQKEPKHGTFVKLGNAVGRRPGVTALVSGGAMAVLAIFALSFNPSFDFNSSLPEGVESTEAMETFQEHFSAGAAEPVPVLVDAKDTEVTPDQLEAFKTALGEAKGVDAVDGPVPSADGTAYQYYLTLSDDPVSDAAQDNVSGPIRDAAHDAAPEGTEAYVGGTPGIFADMSAAMSRDYKVVFPIAALVIMVILALLLRSLVAPWFLMAAVGLGFAATLGLTVIAFQHIGGEAGLIFMLPIYIYLFVTALGTDYNILMIARLREEAREGRDPHDAARQAVTHAGPTIGAAGIILAGTFASLMLGGNTLIVSMGFALAVGILIVSFVMSMFFTPALTSLLGHAAWWPGHGDEKRDGAEEHAPSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ80</accession>
    <name>A0A0Q8VQ80_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00810</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896743.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59598">
        <property type="protein sequence ID" value="KRC59598"/>
        <property type="gene ID" value="ASE19_00810"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="60" mass="6380" checksum="00878C478A3F1153" modified="2016-01-20" version="1">MISGSPRRLAFHIVVVLAAALVLWTGDPDRLMTVLAGVVIAFNLVGVVRELLPRSNPAAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQI0</accession>
    <name>A0A0Q8VQI0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">50S ribosomal protein L6</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rplF</name>
        <name evidence="7" type="ORF">ASE19_06510</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 5">This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the universal ribosomal protein uL6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894486.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55079">
        <property type="protein sequence ID" value="KRC55079"/>
        <property type="gene ID" value="ASE19_06510"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1398618at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.930.12">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01365_B">
        <property type="entry name" value="Ribosomal_L6_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000702">
        <property type="entry name" value="Ribosomal_L6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020040">
        <property type="entry name" value="Ribosomal_L6_a/b-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036789">
        <property type="entry name" value="Ribosomal_L6_a/b-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019906">
        <property type="entry name" value="Ribosomal_L6_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002358">
        <property type="entry name" value="Ribosomal_L6_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11655">
        <property type="entry name" value="PTHR11655"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11655:SF14">
        <property type="entry name" value="PTHR11655:SF14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00347">
        <property type="entry name" value="Ribosomal_L6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002162">
        <property type="entry name" value="Ribosomal_L6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00059">
        <property type="entry name" value="RIBOSOMALL6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56053">
        <property type="entry name" value="SSF56053"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03654">
        <property type="entry name" value="L6_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00525">
        <property type="entry name" value="RIBOSOMAL_L6_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 5" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L6" evidence="6">
        <location>
            <begin position="11"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L6" evidence="6">
        <location>
            <begin position="90"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC55079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="179" mass="19306" checksum="FA6D02BB9880A54C" modified="2016-01-20" version="1">MSRIGKLPVPVPAGVDVQVDGPLVTVKGPKGTLSHSVISPITVEKGEGVLDVKRPDDERLSKAYHGLSRTLINNMVVGVTDGYEKKLEIVGVGYRVLSKGPTQLEFQLGYSHVIIFDAPEGITFTVESPTKLSVVGIDKQLVGEVAANIRKLRKPEPYKGKGVRYAGEHVRRKVGKAGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQI2</accession>
    <name>A0A0Q8VQI2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SGNH_hydro domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01020</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896705.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59636">
        <property type="protein sequence ID" value="KRC59636"/>
        <property type="gene ID" value="ASE19_01020"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360270" description="SGNH_hydro domain-containing protein" evidence="1">
        <location>
            <begin position="30"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="domain" description="SGNH_hydro" evidence="2">
        <location>
            <begin position="57"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="23653" checksum="3ADBAE9BA87D90A5" modified="2016-01-20" version="1">MTRRPFVLAALVVLLATVVTTTAWTRAGAGPDRCAQRADTARERSQLVTGTGASVLVIGDSYSVGAGVRPEQSWPVRLPGRVRVDGFSGSGFSIGASGCGDVSYASRAPRSLRPGTDLVVVEGGLNDTDQPAADLEGGFRLLMRELAGTPVLVVGPPAAPDRPRADVERVDATLARLAAELGASYLSTVDAELTYLDDDLHPDPAGHRVFGDLVATRVRDLLHLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQM4</accession>
    <name>A0A0Q8VQM4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">CheX domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01385</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59704">
        <property type="protein sequence ID" value="KRC59704"/>
        <property type="gene ID" value="ASE19_01385"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1956590at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028976">
        <property type="entry name" value="CheC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028051">
        <property type="entry name" value="CheX-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13690">
        <property type="entry name" value="CheX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103039">
        <property type="entry name" value="SSF103039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CheX" evidence="2">
        <location>
            <begin position="60"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="173" mass="17903" checksum="9B1F247B5629DE58" modified="2016-01-20" version="1">MGMNVLTFFEATPDEVDAPTVDDLQAVTEDVWLALVGEDEVLLPRLVPPGTPFDATGVWSAAVTISGGWHGVVTVELDADVAGRLSARMLDLPSAEDAEDADVADAVGELVNMIGGNVKSLMPGPSVLSLPAVAAGRAVFASDVTEVCRIDVAWRGGPVRICIHVPNASGGSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR25</accession>
    <name>A0A0Q8VR25_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">tRNA dimethylallyltransferase</fullName>
            <ecNumber evidence="5">2.5.1.75</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Dimethylallyl diphosphate:tRNA dimethylallyltransferase</fullName>
            <shortName evidence="5">DMAPP:tRNA dimethylallyltransferase</shortName>
            <shortName evidence="5">DMATase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Isopentenyl-diphosphate:tRNA isopentenyltransferase</fullName>
            <shortName evidence="5">IPP transferase</shortName>
            <shortName evidence="5">IPPT</shortName>
            <shortName evidence="5">IPTase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">miaA</name>
        <name evidence="9" type="ORF">ASE19_01110</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 5 7">Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5 6">
            <text>adenosine(37) in tRNA + dimethylallyl diphosphate = diphosphate + N(6)-dimethylallyladenosine(37) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:26482"/>
            <dbReference type="Rhea" id="RHEA-COMP:10162"/>
            <dbReference type="Rhea" id="RHEA-COMP:10375"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57623"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74415"/>
            <dbReference type="EC" id="2.5.1.75"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 5 8">Belongs to the IPP transferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.75" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896687.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59654">
        <property type="protein sequence ID" value="KRC59654"/>
        <property type="gene ID" value="ASE19_01110"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1069591at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052381">
        <property type="term" value="F:tRNA dimethylallyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00185">
        <property type="entry name" value="IPP_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039657">
        <property type="entry name" value="Dimethylallyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018022">
        <property type="entry name" value="IPT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11088">
        <property type="entry name" value="PTHR11088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00174">
        <property type="entry name" value="miaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 6" id="KW-0819">tRNA processing</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="19"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="17"/>
            <end position="24"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Interaction with substrate tRNA" evidence="5">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with substrate tRNA" evidence="5">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="320" mass="34940" checksum="EA26B23B2185D297" modified="2016-01-20" version="1">MASAATTTASPVVAIVGPTASGKTSLSLDLAAALGGEVVNTDAMQVYRGMDIGTAKLPPAERRGIPHHLLDTLDVREPATVAQFQAWARAAIADIRGRGATPVLVGGSALYTRAILDRFDFPGTDAAVRERYEAELEEVGSAVLHARLRELDPVSAERIEVENGRRVVRALEVIELTGQPFSARLPVQEYVDPATVQVGVAIERDVLEERIRLRVRQMFDEGLLEEVERLLPAGLAEGRTASLAIGYRQAMAVLAGEMSLDEAIERTVIATRKFARRQMAWWRNDPRITWVAHDDPDRVAQALAAVRDVMRPGRPDDRNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVC4</accession>
    <name>A0A0Q8VVC4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_01750</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896877.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59827">
        <property type="protein sequence ID" value="KRC59827"/>
        <property type="gene ID" value="ASE19_01750"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="8"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="123"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="230"/>
            <end position="372"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="374" mass="39627" checksum="53B21ED3B96F8770" modified="2016-01-20" version="1">MTRTVFEPEHEAFRANVRTFLEEEVVPEYADWITEGRPSARFWKGVGALGVLGIGVPEEYGGTPGTDFRHSVVVTEEIQRLGLAIGGLRVHTDICVPYLLHHASDEQRRQWLPGMCAGDVVVALGLSEPGAGSDLKAIATRAERDGDHYVVNGAKTFISNGASADLVILAVKTDPAAGRDGISLLLVDTTTPGFARGRKLDKLGLAAQDLAELSFTDMRIPVSARLGVENEGFRYLTSNLAHERLSIAVNSQAAAVAALDWTVADIAGTGAGQDTKFTLAACATEVAAGQALVDQAISEHVADRLGVADAALVKLFATELQGRVVDQCLSVTDPATAYATDSRIGNAYLDGRVSRIYAGSSEIMKVIVGQQLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYJ5</accession>
    <name>A0A0Q8VYJ5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Fumarate hydratase class II</fullName>
            <shortName evidence="2">Fumarase C</shortName>
            <ecNumber evidence="2">4.2.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Aerobic fumarase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Iron-independent fumarase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">aspA</name>
        <name evidence="2" type="synonym">fumC</name>
        <name evidence="5" type="ORF">ASE19_00655</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>(S)-malate = fumarate + H2O</text>
            <dbReference type="Rhea" id="RHEA:12460"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15589"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="EC" id="4.2.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate metabolism; tricarboxylic acid cycle; (S)-malate from fumarate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="2">There are 2 substrate-binding sites: the catalytic A site, and the non-catalytic B site that may play a role in the transfer of substrate or product between the active site and the solvent. Alternatively, the B site may bind allosteric effectors.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.2" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59805">
        <property type="protein sequence ID" value="KRC59805"/>
        <property type="gene ID" value="ASE19_00655"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER01007"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045239">
        <property type="term" value="C:tricarboxylic acid cycle enzyme complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004333">
        <property type="term" value="F:fumarate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006106">
        <property type="term" value="P:fumarate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01362">
        <property type="entry name" value="Fumarase_classII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00743">
        <property type="entry name" value="FumaraseC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005677">
        <property type="entry name" value="Fum_hydII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018951">
        <property type="entry name" value="Fumarase_C_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11444">
        <property type="entry name" value="PTHR11444"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10415">
        <property type="entry name" value="FumaraseC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 5" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Lyase_1" evidence="3">
        <location>
            <begin position="2"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="domain" description="FumaraseC_C" evidence="4">
        <location>
            <begin position="391"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="88"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding (B site)" evidence="2">
        <location>
            <begin position="112"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="122"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="307"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="2">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="301"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="302"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="2">
        <location>
            <position position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF10415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC59805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="450" mass="46474" checksum="8E6E111808228F68" modified="2016-01-20" version="1">MGEVRVPAAALWQAQTQRAVENFPISGTPIEPALVHALGEVKAAAARANAALGVLPAELAGAIEDAARAVAGGRHDDQFPIDVFQTGSGTSSNMNANEVIATLAAQAGVTVHPNDHVNASQSSNDTFPTAIHVAATLAVVRDLLPALDVLASSLEAKAGEFADLVKSGRTHLMDATPVTLGQELGGYAATIRYGAERLASVLPRVRELPLGGTAVGTGINTPPGFAEAAIAALGEATGEPFTEARNHFEAQGTRDSLVELSGVLRTIAVGLTKICNDLRWMGSGPTTGLAEIHLPDLQPGSSIMPGKVNPVLPEATLMVCMQVIGNDAATTVAGASGSFELNVAMPVMARNVLESIRLLATSTTTLAARCIDGITADAERMHRYAASSPSVVTPLNRHIGYEAAAKIAKQALADGTTIRETVLALGYVDRGELTLDELDAALDLAAMTRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYQ9</accession>
    <name>A0A0Q8VYQ9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SnoaL-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896868.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59474">
        <property type="protein sequence ID" value="KRC59474"/>
        <property type="gene ID" value="ASE19_00045"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1736098at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13577">
        <property type="entry name" value="SnoaL_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="8"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="152" mass="16565" checksum="4AD3D1AEBD81DE70" modified="2016-01-20" version="1">MSIEERLQRLEDVQAITQLIASYGPLVDAGEAERVADLWTEDGVYDVDEIFMGSRAEVEAMVRSDAHQGLIGNGSSHFLGPAHVTVDGDRAVAVCESVLLVRHHGKVFPARIGANHFELVRTDGGWRTTRRTTRGLDGSADARELLARTGVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W186</accession>
    <name>A0A0Q8W186_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CN hydrolase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00170</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896845.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59495">
        <property type="protein sequence ID" value="KRC59495"/>
        <property type="gene ID" value="ASE19_00170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CN hydrolase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="237" mass="24019" checksum="3830EFE9FBD57517" modified="2016-01-20" version="1">MIVAAAQAESRAGDLASNVATAARLVRQAQARVVVLPEAFLTGYDASVFAGSLPTLDDLAGGVLDPLREAAAAYGTTVVASAALLRPHGRTLSSVVVEPDGTTTAPYDKQHLDGDEPTWFVAGRAGAEVVVDGHRLALSICRDGSVPSHAAAAAAAGASAYLCSAAYFPGGARRMDVTYAARALDHRFPVVVAGLTGRCGTHTFIGCSAIYGPDAELLARLGAEEGIALASLSSVGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W222</accession>
    <name>A0A0Q8W222_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Carnitine dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_01650</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896588.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59751">
        <property type="protein sequence ID" value="KRC59751"/>
        <property type="gene ID" value="ASE19_01650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="969868at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC59751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="378" mass="39862" checksum="A71C5AABE25FB2A9" modified="2016-01-20" version="1">MTGPLSGLKVVELAGIGPGPYAAMLLADMGAEVVRVERPGRQGSSVPPEQDVLRRNRRSVVLDLRDPRGVRAVLQLVAQADVLLEGFRPGVTERLGLGPEDCWAANPRLVYGRMTGWGQEGPLAAAAGHDIGYIAVTGALHAMGRADGPPIPPVNLVGDFGGGSMFLVTGVLAACWEAARSGRGQVVDAAIVDGASSLTGLLHGMLATGLWRDRRGANMLDGGMPWYDTYATSDGQWMAVGALEPQFYDELVRLLELDPAVADRSDPARWPGIRSALEAAFASRTRDEWAEVFEGTDACVAPVLSLREAAEHPHLAKRETFVEVGGVVQPAPAPRFSRTSSALPDAPPAIGQDTRDVLTAWGVEDVAGLIDDGVAVQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMB3</accession>
    <name>A0A0Q8UMB3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Elongation factor 4</fullName>
            <shortName evidence="5">EF-4</shortName>
            <ecNumber evidence="5">3.6.5.n1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Ribosomal back-translocase LepA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">lepA</name>
        <name evidence="7" type="ORF">ASE19_19595</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>GTP + H2O = GDP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="3.6.5.n1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Peripheral membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. LepA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.n1" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895860.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46084">
        <property type="protein sequence ID" value="KRC46084"/>
        <property type="gene ID" value="ASE19_19595"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045727">
        <property type="term" value="P:positive regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03709">
        <property type="entry name" value="lepA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2570">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00071">
        <property type="entry name" value="LepA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006297">
        <property type="entry name" value="EF-4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038363">
        <property type="entry name" value="LepA_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013842">
        <property type="entry name" value="LepA_CTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035654">
        <property type="entry name" value="LepA_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43512">
        <property type="entry name" value="PTHR43512"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06421">
        <property type="entry name" value="LepA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01393">
        <property type="entry name" value="lepA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="6">
        <location>
            <begin position="14"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="26"/>
            <end position="31"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="150"/>
            <end position="153"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC46084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="623" mass="68042" checksum="C9D832E51C1D02F8" modified="2016-01-20" version="1">MSAPAPQPGHTDPAIIRNFCIIAHIDHGKSTLADRMLQLTGVVGEREAKAQYLDRMDIERERGITIKSQAVRMPWTVTAGNEAGAEPGTYILNMIDTPGHVDFTYEVSRSLQACEAAILLVDAAQGIEAQTLANLYLAMGADLHIIPVLNKIDLPSANVEKYAAELANLVGCEPEDVLLTSAKTGVGVEALLNEIVRSVPAPVGDPDAPARALIFDSVYDTYRGVVTYVRVFDGELSHRDKIKMMSTGALHEMLEVGVISPEPMKAAKLGVGETGYLITGVKDVRQSRVGDTVTVNGRQAAEPLGGYEHPKPMVFAGLYPIDGDDYPTLRDALEKLQLNDAALTFEPETSGALGFGFRCGFLGLLHMEITRERLEREFNLDLISTAPNVVYEVVMEDGSQLTVTNPSEYPDGKIAEVREPIVDATVLAPADFIGTIMELCQHKRGTLQGMDYLSEDRVEMRYVLPMGEIAFDFFDQLKSKTKGYASLNYEFSGDQAADLVKVDILLQGEPVDAFSAIVHKDAAYSYGVMMAGKLKELIPRQQFEVPIQAAIGARVIARENIRAIRKDVLAKCYGGDITRKRKLLEKQKEGKKRMKMVGRVEVPQEAFVAALSSTGPAGDKPKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UMQ4</accession>
    <name>A0A0Q8UMQ4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_20785</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896051.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46280">
        <property type="protein sequence ID" value="KRC46280"/>
        <property type="gene ID" value="ASE19_20785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="887953at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03220">
        <property type="entry name" value="ABC_KpsT_Wzt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015860">
        <property type="entry name" value="ABC_transpr_TagH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="22"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="59"/>
            <end position="66"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC46280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="257" mass="28111" checksum="26C344FCB1B435AC" modified="2016-01-20" version="1">MATSIVAENVTKEFTLRYHRTFKEVTVAKARGHKTSDRFNAIDDLSFTVEEGESIGLMGLNGSGKSTLLKMINGVMRPDQGSLLTRGRIAGLIATGAGFHPQLSGSENLVLNAAILGMTERELKRKYDDIVEFAGLGRLLDAPVGHYSSGQKARLGFAVAVHVDSDIFLADEVLAVGDKPFRSKCMKKMMQIRDSGRTLVYVSHSPASVERMCSRVIVLEQGRLGFDGDPKAAIHYLEYDTPEDGEELTDEQMGNDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN20</accession>
    <name>A0A0Q8UN20_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21405</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896161.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46390">
        <property type="protein sequence ID" value="KRC46390"/>
        <property type="gene ID" value="ASE19_21405"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="23"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="81" mass="8070" checksum="98F553E9AE2223B7" modified="2016-01-20" version="1">MANEPLMDLTPRLRGSLAMGASAYGAATIGAAALGALALGAVAVGAVAIGKLMLGEGQVRKLVIDELEVKVLRVGTVEPLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN27</accession>
    <name>A0A0Q8UN27_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pterin-4-alpha-carbinolamine dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21415</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896162.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46392">
        <property type="protein sequence ID" value="KRC46392"/>
        <property type="gene ID" value="ASE19_21415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1468733at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001314">
        <property type="entry name" value="Peptidase_S1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001254">
        <property type="entry name" value="Trypsin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018114">
        <property type="entry name" value="TRYPSIN_HIS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00089">
        <property type="entry name" value="Trypsin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00722">
        <property type="entry name" value="CHYMOTRYPSIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00020">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50240">
        <property type="entry name" value="TRYPSIN_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00134">
        <property type="entry name" value="TRYPSIN_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359235" evidence="1">
        <location>
            <begin position="27"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase S1" evidence="2">
        <location>
            <begin position="27"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="280" mass="29138" checksum="92B7C4767B93058D" modified="2016-01-20" version="1">MRARLPILAGAILAGLGLIAPAPATASTGGTADGDAHPNVAMIAFYDADGRFRCSATLISPTVLVTAAHCTDGTLGRTLVTFDSVIAEAPPSPLPVAQDVTAGYTADELAAAGYLSGTAYTHPQYSDFTDLDNWNDVGVIVLDEPVAGIATAPLAGVHAADAIKQPRKTIFRAVGYGTEVRQADSGPQKPTPMSYPLIRRYVDVPGQKITPQVIQVNGNENDPFGTGGTCFGDSGGSLWLDGKVVGVTSYGLTQNCRYIAGFQRIDIPVVADWLAGFLTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN39</accession>
    <name>A0A0Q8UN39_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_21510</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896180.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46410">
        <property type="protein sequence ID" value="KRC46410"/>
        <property type="gene ID" value="ASE19_21510"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC46410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="210" mass="22065" checksum="5E07BAE16CFB5F2A" modified="2016-01-20" version="1">MQPTDTLDGMLAFNANWTGRDRETLSRVASAASITDWRYFKNGNRPGYWGSNAAGERLVWVMAGRVRVHADHASTTVPLLAESGLDPQPTATEPWASHEVLLSNAGGTGRARGATTSNADAAIAAVPVLRAAALANQTLTYAEFAEAVGTVPRNAGAVLKIFMISGEDARRAAFVVDPATGEPSHGHTSTAPAEARAAAHRLARLLHGDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UN70</accession>
    <name>A0A0Q8UN70_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH luxR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21700</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896213.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46443">
        <property type="protein sequence ID" value="KRC46443"/>
        <property type="gene ID" value="ASE19_21700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1377603at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="437"/>
            <end position="502"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="504" mass="55386" checksum="6C927B9AD7F88156" modified="2016-01-20" version="1">MNWSHDLCTPDERLLWSRLAVFPGSFDLDAVEAVCGFEGLPAEIILDLLDRLVAKSIVIAEPSGAAMRYRTLVTIRDYAAQRLRERDEWVVVKRRHRDHYLGQAGRMVEVWCGREQPEMLASMRADHANLLAALEWSVNTPGEERAAASLASLLRYHWIAGGYLSEGRRWFDRILQLDDTPTPERGSALWVAAWVALIQGDRDWAATCLGSCREVAAALGDGHLAAHAGQWTGLLLLFSGRLDDSIAAFRESIAVLEENGDDAALTTALFQLAMAQTYLDDPQGALGTCRRVLSLSERRGDQWSRAYALWVSGLCHWHLGEAEEGRAAARAALGYQRAFGDGICIALTVELLAWLDIDAGVFDEAAILNGAAAAVWRQLGTTIEAFGPHITAESSAMAARLVGELGSDRSGELTIHDITRYDAVDLALDGRRPEPPPDDDVVRLTPREHEVVQLIAEGLSNRVIAEKLVLSVRTIDGHVERVLAKLEVGSRTQIATWALSRSMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNT8</accession>
    <name>A0A0Q8UNT8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22165</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896420.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46651">
        <property type="protein sequence ID" value="KRC46651"/>
        <property type="gene ID" value="ASE19_22165"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1807879at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009781">
        <property type="entry name" value="DUF1345"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07077">
        <property type="entry name" value="DUF1345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="175"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="198" mass="20430" checksum="C913D164ED285B08" modified="2016-01-20" version="1">MLSAVLAGTAAAVLGSLVEVQLGVLLAIAVAGSVYVVFGWTVLWPMDAEATRVNATHEDLSPGVDEVVVGAAALGGLGGVIALLLVGSDVAGRADAAVALGGVFVAWASLHLMYATRYAHLYYSGTPGGIDFNGDEEPSFRDFLYFSYNLGMTYQVSDTSVQTSAVRAVVLRHCLISYVFGAAILATTINLVVGIVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNY3</accession>
    <name>A0A0Q8UNY3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896429.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46660">
        <property type="protein sequence ID" value="KRC46660"/>
        <property type="gene ID" value="ASE19_22565"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1465613at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="9"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="338" mass="35662" checksum="1E3A7F4137BF4E00" modified="2016-01-20" version="1">MTSSPDPIGWGILATGKIARTFATDLALVPGARLAAVGSRSAEGAAAFAREYGDADTHAHGTYAALLADPAVDVVYIATPHALHLEGARAAFEAGKHVLCEKPLTLRAADAEEMVRLARAHDRFLMEAMWMACHPVIRELRDELATGRFGTPLHLAAELGFRVDAPPTGRMFAPELGGGALLDMGIYPLTFAHLMLGEAVELTAVASLAETGIDLDVAIAGGYPGGAVASMHASMSSWSSRAASIATDLGRIELHGDFHHPGSAVFTPVGRPDQQVVLTGREPVIGVGYGNEIAEVDRCVLADLRESPLVPHEQTLTLLGQMDGLRQQLGIRYPDDPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UUF5</accession>
    <name>A0A0Q8UUF5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Fimbrial assembly protein FimA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_18080</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893229.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48828">
        <property type="protein sequence ID" value="KRC48828"/>
        <property type="gene ID" value="ASE19_18080"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1771686at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010430">
        <property type="entry name" value="DUF1028"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06267">
        <property type="entry name" value="DUF1028"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC48828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="222" mass="22697" checksum="38712E2F09C5BE9C" modified="2016-01-20" version="1">MTFSVLGTDGRGAVGIAVTSSSPAVAARCIHLRPGVGGASSQNITDPRLGTALLDALESGLDPRAALAAVTEGREHVEHRQLTVLSPDGTGAAFSGTGSLGVHHHVVAPDVVAAGNLLAGTAVVDAVAAAFTTATGELEERLLAALEAGLAAGGEAGPVRSAGLSVVRDVAWRVTDLRVDWSDRPIEDLRDLVEVWLPQRDDYVTRGLDPTTAPSYGVPGDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV38</accession>
    <name>A0A0Q8UV38_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_19540</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893480.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49078">
        <property type="protein sequence ID" value="KRC49078"/>
        <property type="gene ID" value="ASE19_19540"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC49078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="92" mass="9570" checksum="43E0D786F98B9DF7" modified="2016-01-20" version="1">MPQFAFDIADVVDLGDDHEGITLIGPPIGTSGGLEIGDTLLVPTVEGDHTPCECVGFPLVDLGPERASWVRVSVGGVMLDEVLVGARATRQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV50</accession>
    <name>A0A0Q8UV50_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_20340</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46208">
        <property type="protein sequence ID" value="KRC46208"/>
        <property type="gene ID" value="ASE19_20340"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1623593at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071586">
        <property type="term" value="P:CAAX-box protein processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003675">
        <property type="entry name" value="Rce1-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02517">
        <property type="entry name" value="Rce1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="122"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="203"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="231"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="286"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="329" mass="33946" checksum="1622D0662279F532" modified="2016-01-20" version="1">MTAASGGCSVPSADGLRYERLQEVGPADAWRPYAGVGLLVVLFVVGQFVVGAVVTVFLATSGDSAARITDELSGDPATPSFLALVNLGWAAVIPSVLVVALLVHRMAPGWVVSVAGAVRWRWLATCLGLAVVALAVTFGVSLLLPDQGAGTVDLGGGLNSWSSTTRDFLLVVLLLTPLQAAGEEFAFRGYLAQACGAVTGRHGAAVSGTVAVVVPAVLFALAHGVGQDLPIFFDRFAFGVVAGLLVLLTGGLEAGIAMHVLNNFFAFGLALAFGDMGETLTPTDGTWWAVPVTLTQSLAYLGLTLWAARRLGVATRTSAAILESRGRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVJ2</accession>
    <name>A0A0Q8UVJ2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Septum_form domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_21190</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896123.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46352">
        <property type="protein sequence ID" value="KRC46352"/>
        <property type="gene ID" value="ASE19_21190"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1953080at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026004">
        <property type="entry name" value="Septum_form"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13845">
        <property type="entry name" value="Septum_form"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="25"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="62"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="Septum_form" evidence="3">
        <location>
            <begin position="133"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC46352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="357" mass="38775" checksum="F7D656A04BCABF46" modified="2016-01-20" version="1">MTGHPAPPPPAYTPPPPPPPGNDTALGWTGLGLSVLLCIPLAPLAGAVVAVVALVRRRFRPRWVAVVSAAVGVLLTALQGLAVPSIVAGVRDGIEDAQEKASRDLVDHDELDKGDCVDDPDLRTLDGDGEMLTAEIERVPCGEPHDAEIFAVLRVPGEEFPGKAAIDRRTRECVLLFADFAGVRYSASPYDVFFYYPTRTTWQFGGDREIQCAVGDPEGRVTGTLAGSGRAHAPEPGKVISIDRLLVGDCYDARRKEDLPGVILRRCAGPHTGEVFAVVDVNARRFPGNDTLWERAQPKCERAFRRYVGTAYDDSRYTYEGWTPTRESWPLGDRVTVCALNEEDGRAMKGSAKGTRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXH1</accession>
    <name>A0A0Q8UXH1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21920</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896250.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46481">
        <property type="protein sequence ID" value="KRC46481"/>
        <property type="gene ID" value="ASE19_21920"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1745184at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="8"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="213" mass="23708" checksum="062BA58B5D2873B5" modified="2016-01-20" version="1">MARPSTKEVRRREILRAALDLIAVDDRTEVTVVSVARHMGLTPNAIRYYFRDNDALGQALDAQVMSRFLGERLAAIAELDDPRHQLVRVMELGIPTGPDDIEWRSTFRPLLAGVVTADSGQYLSDVFEDQVAVYRDVLVDGERSGVFALRQPAADIARLLLAMEDYLGLRITLMDPRLDRAEALRLMRDYAALATGTELPSDGRGSTPEEPRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXL3</accession>
    <name>A0A0Q8UXL3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 9">Cytidine deaminase</fullName>
            <ecNumber evidence="6 9">3.5.4.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">Cytidine aminohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_22115</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 9">This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 9">
            <text>2'-deoxycytidine + H(+) + H2O = 2'-deoxyuridine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:13433"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15698"/>
            <dbReference type="ChEBI" id="CHEBI:16450"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>cytidine + H(+) + H2O = NH4(+) + uridine</text>
            <dbReference type="Rhea" id="RHEA:16069"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16704"/>
            <dbReference type="ChEBI" id="CHEBI:17562"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5 9">Belongs to the cytidine and deoxycytidylate deaminase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.5" evidence="6 9"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896282.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46513">
        <property type="protein sequence ID" value="KRC46513"/>
        <property type="gene ID" value="ASE19_22115"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1895660at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004126">
        <property type="term" value="F:cytidine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047844">
        <property type="term" value="F:deoxycytidine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006262">
        <property type="entry name" value="Cyt_deam_tetra"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01354">
        <property type="entry name" value="cyt_deam_tetra"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="10">
        <location>
            <begin position="3"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00003949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00006576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00018266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00032005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU364006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC46513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="139" mass="14505" checksum="270C7E2854024687" modified="2016-01-20" version="1">MGVDWEALRRAADDIAERAYAPYSRYHVGAAALVDDGRLVTGCNVENAAYGVTLCAECGLVSQLHATGGGRLTHFVCVNGTGEVIMPCGRCRQLLWENGGATLEVMTPQGVLTMDQVLPQAFGPENLASGGDGLGSVHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UY91</accession>
    <name>A0A0Q8UY91_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16670</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893703.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50234">
        <property type="protein sequence ID" value="KRC50234"/>
        <property type="gene ID" value="ASE19_16670"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1271408at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021441">
        <property type="entry name" value="DUF3090"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11290">
        <property type="entry name" value="DUF3090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03847">
        <property type="entry name" value="TIGR03847"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="19682" checksum="994203C6DC1ACEE1" modified="2016-01-20" version="1">MPIVHGFDPPERFVAGTVGEPGSRTFFLQATAGARIVSVALEKQQVAALAERVDELLDEVIADGNTQGVIPAIAPFGLADDAPLTQPIEEEFRAGTMTLSWDPADERVVIEVFPVGEEPAELADGAEPDEMLLVRLEPGQARAFVKRAEAVIGAGRPSCPFCGQPIDPEGHLCVRANGFKRRDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYD3</accession>
    <name>A0A0Q8UYD3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">5,10-methylene tetrahydromethanopterin reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16860</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893735.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50266">
        <property type="protein sequence ID" value="KRC50266"/>
        <property type="gene ID" value="ASE19_16860"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1434838at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023934">
        <property type="entry name" value="LLM_FMN-dep_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04036">
        <property type="entry name" value="LLM_CE1758_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="389" mass="42961" checksum="45D2D520F54D79C7" modified="2016-01-20" version="1">MQIGIFTVGDVTTDPTTGRTPTEYERIKATVEIAKKAEEVGLDVFATGEHHNPPFIASNPTATLAYIGAQTENIILSTATTLITTTDPVLIAEDYAKIQHLTDGRVDLMMGRGNTGPVYPWFGKDIRQGINLAIENYALLRRLWTEDVVDWEGRFRTPLQGYTSTPRPLDGVAPFVWHGSIRSPEIAEQAAYYGDGYFHNHIFWPASHAAQMVNLYRERFEHYGHGRADQAIVGLGGQIFMNRSSQEAVRRFRPYFDNAPVYGHGPSLEEFTEHTPLTVGSPQQVLERTLSFREYAGHYQRQLFLVDHAGLPLKTVLEQLDLLGEILPEMRKGFAEGRPADIPDAPTHASLVAAAGGAKDGTVHAEDTMTGTTDRDAETEAVLVEGAEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYE7</accession>
    <name>A0A0Q8UYE7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16965</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893755.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50286">
        <property type="protein sequence ID" value="KRC50286"/>
        <property type="gene ID" value="ASE19_16965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2033757at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="87" mass="9202" checksum="FE008B5B67170DFF" modified="2016-01-20" version="1">MGVRPDNRLADAPMHPVACASCAGRVLVRKASWHQTSVQWTDEAQAACTSWSPGSAVLGFPPVCDRLRTSIADAVLDGTLPVVGDEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UYX1</accession>
    <name>A0A0Q8UYX1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Methylenetetrahydrofolate reductase</fullName>
            <ecNumber evidence="8">1.5.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_21200</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + NAD(+) = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:19821"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.5.1.20"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + NADP(+) = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19817"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 8">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4 8">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the methylenetetrahydrofolate reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.20" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896125.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46354">
        <property type="protein sequence ID" value="KRC46354"/>
        <property type="gene ID" value="ASE19_21200"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1425269at2"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106312">
        <property type="term" value="F:methylenetetrahydrofolate reductase NADH activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106313">
        <property type="term" value="F:methylenetetrahydrofolate reductase NADPH activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006555">
        <property type="term" value="P:methionine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029041">
        <property type="entry name" value="FAD-linked_oxidoreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003171">
        <property type="entry name" value="Mehydrof_redctse-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02219">
        <property type="entry name" value="MTHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51730">
        <property type="entry name" value="SSF51730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0274">FAD</keyword>
    <keyword evidence="5 8" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC46354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="311" mass="34578" checksum="C91837473F94F759" modified="2016-01-20" version="1">MDITTRLRSGQGDVVLFAITPPRRSTPAERLPEIARATIERLQHLDLDGLILYDIDDESSRNPVERPFPFSPTVDPSDYRAAHLPAWPTPVVVYRAVGKYPREGLQDWIREQDADRTLTVMVGAASSGTSAPVTLSEAQAMRADLNPDLLLGGVAIPERHSRRDNEHLRLIAKQEAGCRFFVTQVVYDLNAAKNLVSDYRYACEERGLEPVPIVFTFSVCGSMKTLEFLRWLGVDVPRWIENDLRHAKNPLAASLDQAVATAVELVDFCRRLGVPFGVNVESVSIRREEIEASVELASQLIGHLRADAATP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UZL2</accession>
    <name>A0A0Q8UZL2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">ATP:glutamine synthetase adenylyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">ATase</fullName>
        </alternativeName>
        <domain>
            <recommendedName>
                <fullName evidence="3">Glutamine synthetase adenylyl-L-tyrosine phosphorylase</fullName>
                <ecNumber evidence="3">2.7.7.89</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="3">Adenylyl removase</fullName>
                <shortName evidence="3">AR</shortName>
                <shortName evidence="3">AT-N</shortName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="3">Glutamine synthetase adenylyl transferase</fullName>
                <ecNumber evidence="3">2.7.7.42</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="3">Adenylyl transferase</fullName>
                <shortName evidence="3">AT</shortName>
                <shortName evidence="3">AT-C</shortName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="3" type="primary">glnE</name>
        <name evidence="6" type="ORF">ASE19_17765</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[glutamine synthetase]-L-tyrosine + ATP = [glutamine synthetase]-O(4)-(5'-adenylyl)-L-tyrosine + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:18589"/>
            <dbReference type="Rhea" id="RHEA-COMP:10660"/>
            <dbReference type="Rhea" id="RHEA-COMP:10661"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:83624"/>
            <dbReference type="EC" id="2.7.7.42"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[glutamine synthetase]-O(4)-(5'-adenylyl)-L-tyrosine + phosphate = [glutamine synthetase]-L-tyrosine + ADP</text>
            <dbReference type="Rhea" id="RHEA:43716"/>
            <dbReference type="Rhea" id="RHEA-COMP:10660"/>
            <dbReference type="Rhea" id="RHEA-COMP:10661"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:83624"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.7.89"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the GlnE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.89" evidence="3"/>
    <dbReference type="EC" id="2.7.7.42" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893826.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49097">
        <property type="protein sequence ID" value="KRC49097"/>
        <property type="gene ID" value="ASE19_17765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="427701at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008882">
        <property type="term" value="F:[glutamate-ammonia-ligase] adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047388">
        <property type="term" value="F:[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008152">
        <property type="term" value="P:metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000820">
        <property type="term" value="P:regulation of glutamine family amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00802">
        <property type="entry name" value="GlnE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023057">
        <property type="entry name" value="GlnE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005190">
        <property type="entry name" value="GlnE_rpt_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013546">
        <property type="entry name" value="PII_UdlTrfase/GS_AdlTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30621">
        <property type="entry name" value="PTHR30621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08335">
        <property type="entry name" value="GlnD_UR_UTase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03710">
        <property type="entry name" value="GlnE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 6" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GlnE" evidence="4">
        <location>
            <begin position="82"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="GlnD_UR_UTase" evidence="5">
        <location>
            <begin position="328"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="domain" description="GlnE" evidence="4">
        <location>
            <begin position="574"/>
            <end position="809"/>
        </location>
    </feature>
    <feature type="domain" description="GlnD_UR_UTase" evidence="5">
        <location>
            <begin position="834"/>
            <end position="973"/>
        </location>
    </feature>
    <feature type="region of interest" description="Adenylyl removase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="region of interest" description="Adenylyl transferase" evidence="3">
        <location>
            <begin position="481"/>
            <end position="976"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00802"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF08335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC49097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="976" mass="106693" checksum="D92246D0CB4DA409" modified="2016-01-20" version="1">MSLAVNRASQRTELLRLGFVDLDRAQADLAALGPVGVDLLAYLGRTADPDAALHALGRLAEAAQDREQLLAAVADDEGTAMRLLCVLGASAALADHLVTHPFHWRELTDPELGSTRPAAWALRESLLAAVADKPDAEAVNALRVEYRRLLLRLAARDLTHHLGVDDAAAELSDLAAGTLDVALEVARARIGEDADKARLAVIAMGKCGGHELNYVSDVDVIFVHEGDERIAARLAAQLMQVCSDHTAEGTIWPVDANLRPEGKAGPLSRTLASHQGYYERWAEPWEFQALLKARPVAGDLDLGRAFVDMVSPMVWTAADREGFVEAARAMRRRVLDHIPAREADRQLKLGAGGLRDVEFAVQLLQLVHGRADEGIRPPTTLSALARLTEAGYVGREDGEALHRAYAFLRTLEHRIQLHRLQRTHVVPSDEAALRRLGRSLGFLKESEKRLDETWQDHRREVSRLHQKIFYRPLLTAVARIGADEVRLSSEAAGARLAALGYADPQAALRNLEALTSGVSRTAAIQRTLLPAMLQWFAEAPDPDGGLFGFRRISEALGRTPWYLSTLRDEGEVAERLAHLLATSRYCTDLLEREPAGVRLLGGDLAPLPAEALLDEMLATGRRQDGFEKGVRAVRAVRRRELLRIAAGDVLGLVDVADVGFALTRLTDATLAATLEGAMESTARSRGLDEPPTRMAIVAMGRYGGFELSYGSDADVLFVHDPQPGADPHEASTYARLVAEEVRKVLGAPGTDPALVVDADLRPEGRQGPLVRTLDAYAAYYAKWSHVWEAQALLRADAVVGDPDLRERFTALIDPLRYPAGGLTDDDVLEVRRIKGRVDKERLPRGADPALHLKLGRGGLADIEWTVQLLQLRFGADVPGLRTAQTLAALTAAAEAGLVTHEDAATLGTSWRMVTRVRNALLLARGRPGDQFPRASLERRSVAGILGYQTDETDRLLDDYLRITRHARAVVDRVFWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0D6</accession>
    <name>A0A0Q8V0D6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">AsnC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_18035</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893220.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48819">
        <property type="protein sequence ID" value="KRC48819"/>
        <property type="gene ID" value="ASE19_18035"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1844486at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019885">
        <property type="entry name" value="Tscrpt_reg_HTH_AsnC-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13404">
        <property type="entry name" value="HTH_AsnC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00519">
        <property type="entry name" value="HTH_ASNC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="26"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC48819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="171" mass="18200" checksum="2E0F64B0D648D4DF" modified="2016-01-20" version="1">MRTWALRGTGGTCEDPGVSKPKAAPLDDVSKAIIAELQEDGRRSYAAIGKAVGLSEAAVRQRVQRLVDSGVMQVVAVTDPIEMGFARQAMIGIRATGALEPIADALAALDDVDYVVITAGSYDVLAEVVAESDEHLLQIISSGIRTIPGVLSTETLVYLSLRKQTYSWGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0K5</accession>
    <name>A0A0Q8V0K5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_18570</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NAD(P)-dependent epimerase/dehydratase family. SDR39U1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893316.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48915">
        <property type="protein sequence ID" value="KRC48915"/>
        <property type="gene ID" value="ASE19_18570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1566711at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013549">
        <property type="entry name" value="DUF1731"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010099">
        <property type="entry name" value="SDR39U1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08338">
        <property type="entry name" value="DUF1731"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01777">
        <property type="entry name" value="yfcH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="2">
        <location>
            <begin position="5"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1731" evidence="3">
        <location>
            <begin position="249"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009353"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC48915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="299" mass="31212" checksum="5EE76F1C01662341" modified="2016-01-20" version="1">MGLSVVIAGSSGFLGQHLVTELRQRGHVVTALVRRGARGGESQWDPQEGLVDAALVGAADVVVNLAGAPLIGNPHSKKWARDVLSSRVATTRLLAATIAAAPRPPSLVNASGISWYGDHGSAPLTEASDTRGHALLTRVCREWEAAARPASEAGARVALLRTAPVQDRRNAPLKMQRLQFLAGAGGRIGPGTQYYPLISLRDWVGAASFLVEHPTASGPFNLCAPRTPTNAEFTAALAGQVHRPALFPVPSPVIRAAAGPMADELLGSLNLEPRALLDLGHTFADPDVDAVLTAGLARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V0R1</accession>
    <name>A0A0Q8V0R1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_19060</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893397.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48995">
        <property type="protein sequence ID" value="KRC48995"/>
        <property type="gene ID" value="ASE19_19060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2018195at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359591" evidence="1">
        <location>
            <begin position="39"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="225" mass="22355" checksum="222B4C6B2A073C6C" modified="2016-01-20" version="1">MARHARRRYADPRALLLGACAVAATLLTLSVNGTLADWTSAVLTNSTNTVASSTAVILQEVGPDGTAGHATQTCRSSDAAANAATCNTINKYGGTSSPLGPGSNQATDVVFTNLGAANATSFVLTPGTCSSTPSTGTPTPNNLCTTDLTVAISCSGGSTYSAGSAWTDLVYAAGAATSIPTLTHTPGMASGASATCRITVALPAGASVLDQGLTLSQPLSWTLNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2Y0</accession>
    <name>A0A0Q8V2Y0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Ribosomal protein S12 methylthiotransferase RimO</fullName>
            <shortName evidence="7">S12 MTTase</shortName>
            <shortName evidence="7">S12 methylthiotransferase</shortName>
            <ecNumber evidence="7">2.8.4.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Ribosome maturation factor RimO</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rimO</name>
        <name evidence="12" type="ORF">ASE19_18650</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[sulfur carrier]-SH + AH2 + L-aspartate(89)-[ribosomal protein uS12]-hydrogen + 2 S-adenosyl-L-methionine = 3-methylsulfanyl-L-aspartate(89)-[ribosomal protein uS12]-hydrogen + 5'-deoxyadenosine + [sulfur carrier]-H + A + 2 H(+) + L-methionine + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:37087"/>
            <dbReference type="Rhea" id="RHEA-COMP:10460"/>
            <dbReference type="Rhea" id="RHEA-COMP:10461"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:29961"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="ChEBI" id="CHEBI:73599"/>
            <dbReference type="EC" id="2.8.4.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="7">Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the methylthiotransferase family. RimO subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.4.4" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893329.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48928">
        <property type="protein sequence ID" value="KRC48928"/>
        <property type="gene ID" value="ASE19_18650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="397139at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103039">
        <property type="term" value="F:protein methylthiotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018339">
        <property type="term" value="P:peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01865">
        <property type="entry name" value="MTTase_RimO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005839">
        <property type="entry name" value="Methylthiotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020612">
        <property type="entry name" value="Methylthiotransferase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013848">
        <property type="entry name" value="Methylthiotransferase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038135">
        <property type="entry name" value="Methylthiotransferase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005840">
        <property type="entry name" value="Ribosomal_S12_MeSTrfase_RimO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041582">
        <property type="entry name" value="RimO_TRAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002792">
        <property type="entry name" value="TRAM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43837">
        <property type="entry name" value="PTHR43837"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18693">
        <property type="entry name" value="TRAM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00919">
        <property type="entry name" value="UPF0004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00274">
        <property type="entry name" value="ribosomal_protein_S12_methylth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00089">
        <property type="entry name" value="TIGR00089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01125">
        <property type="entry name" value="TIGR01125"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51449">
        <property type="entry name" value="MTTASE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01278">
        <property type="entry name" value="MTTASE_RADICAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50926">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0408">Iron</keyword>
    <keyword evidence="6 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="12" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 7 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MTTase N-terminal" evidence="10">
        <location>
            <begin position="8"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="11">
        <location>
            <begin position="175"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="domain" description="TRAM" evidence="9">
        <location>
            <begin position="408"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="423"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="189"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC48928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="482" mass="51330" checksum="B994F278695E5B3E" modified="2016-01-20" version="1">MTSSPAPVSVALLTLGCARNDVDSEELAGRLAADGFTLVDDPEDADTVVVNTCGFVDAAKKDSIDTLLAASDLKETGRPQAVVAVGCLAERYGEELAASLPEADAVLGFDDYQDISGRLRSILAGEKPHAHTPRDRRLLLPITPTERPAAASQVSVPGHAGDVAIPGRPAIRKRLDGGPMAPLKLASGCDRRCTFCAIPMFRGSFVSRRPSDVLQEAAWLAEQGVRELFLVSENSTSYGKDLGDLGLLETLLPELTAIDGIERVRVSYLQPAETRPGLVRAIATTPGVAPYFDLSFQHASATVLRRMRRFGDPDSFLGLLDQVRALAPDAGVRSNVIVGFPGETEEEFQTLCDFLEAARMDVTGVFGYSDEDGTEAEKLPGKLDDDEINARVQHLNDLVSELTSQRAEDRIGSTVEVLVEEVDPDGTGDGTVEGRAAEQGPEVDGTTRVLGVPDARVGDFVRAVVVASDGVDLIAEPAEGQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V329</accession>
    <name>A0A0Q8V329_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sphingosine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_16525</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50361">
        <property type="protein sequence ID" value="KRC50361"/>
        <property type="gene ID" value="ASE19_16525"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003951">
        <property type="term" value="F:NAD+ kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017438">
        <property type="entry name" value="ATP-NAD_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005218">
        <property type="entry name" value="Diacylglycerol/lipid_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001206">
        <property type="entry name" value="Diacylglycerol_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016064">
        <property type="entry name" value="NAD/diacylglycerol_kinase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045540">
        <property type="entry name" value="YegS/DAGK_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00781">
        <property type="entry name" value="DAGK_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19279">
        <property type="entry name" value="YegS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111331">
        <property type="entry name" value="SSF111331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00147">
        <property type="entry name" value="TIGR00147"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50146">
        <property type="entry name" value="DAGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DAGKc" evidence="1">
        <location>
            <begin position="1"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC50361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="270" mass="28949" checksum="3C54CED340BD868F" modified="2016-01-20" version="1">MRDEALPRFHGAGWQTTSLTSRSAEEALDLARVAVAEQPDVLAVCGGDGMVNIALQALAGSGVPLGILPAGTGNDFARYFDLPLGDGAAAAGRIVHGPTRTIDLARIGERYFGGVLAAGFDAVVNERANRMRWPRGQMRYNLATIAELRTFKPLRYTLELDGVERQVEAMLVAVGNGPSFGGGLRITHGAELDDGLLDLVLIKPVSRVELLKTFPKLFDGSHVNHPQYEHHRVRRVSVAAPGIVGYADGERFGPLPLTVEVVPSAVRVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5D8</accession>
    <name>A0A0Q8V5D8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09285</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FlgD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894560.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52622">
        <property type="protein sequence ID" value="KRC52622"/>
        <property type="gene ID" value="ASE19_09285"/>
    </dbReference>
    <dbReference type="OrthoDB" id="709873at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005648">
        <property type="entry name" value="FlgD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03963">
        <property type="entry name" value="FlgD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="15614" checksum="0C40AA134E0BE9C1" modified="2016-01-20" version="1">MSVGSTEAVTYGVTGHASTGSTTSTATSADKNMFLELMVTQMKYQDPMNPTDSSQMLAQTAQFTSLEKLEAISDQNAMLISTQLAFGATSMIGQTVRWYDKDGVEQSGTVQGTTYMGTGPVLSVDGQQVAITDVVSVGDAPTIKPPTTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5Y1</accession>
    <name>A0A0Q8V5Y1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Multidrug ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_10300</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894731.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52798">
        <property type="protein sequence ID" value="KRC52798"/>
        <property type="gene ID" value="ASE19_10300"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1926714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="240" mass="24791" checksum="B750AFCC589B9449" modified="2016-01-20" version="1">MMNSVVVVDALRVVRGGREVLVGLDLEIGPGVTGLLGPSGCGKSTLLRSVVGVQRTAGGSVTVLGVPAGTTPLRDRVGYQTQSSSVYDDLTVAENLRFFARVLGGPPGSVDEAVAAVDLAGHRDQVVGRLSGGQRSRVGLAVALLGRPDLLVLDEPTVGLDPVLRRDLWALFHRIAADGTAVLVSSHVMDEAERCDQLLLMREGRIIAQGTPAAIKAQAGVDDVEGAFLALVDTAGGEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V658</accession>
    <name>A0A0Q8V658_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH_30 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10655</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894795.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52862">
        <property type="protein sequence ID" value="KRC52862"/>
        <property type="gene ID" value="ASE19_10655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1439158at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_30" evidence="1">
        <location>
            <begin position="329"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="393" mass="41975" checksum="08B800E0592857CF" modified="2016-01-20" version="1">MDGPDVNPEVRKLSARLLPEVDALGAAMAERIRSEIPVYDDGDAVSHQELVASCTVNARYILGNLAGEVSAEETPTQTGSTRAEQGVPYAVVLQAFRVGSRFIWEVLVDRAEPEDRGLLLLAAADIWAVSDQLAADVTDAYRRTLADRARRDGQMRAVLVGSLLDGDADATTYVGETAGMLDLGRATEYVVVSAESPSPGEEGVADVERVLRRSNIRSAWRLDHDHQEGVVALRLGFGVDQLMAVLDGLARARVGVSTVVGRLDEVQEARRQARVACAAVSPGTVAVGRFGADPLAVLLASSPDQARALVDAVLAPVLALPPDDRAVVIDTARAWLAAGGSTSAAARELHVHRNTVRYRVRRLEEVTGRDLARPVDAAELYVALECVRILGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V666</accession>
    <name>A0A0Q8V666_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">SalK</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15130</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896484.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51417">
        <property type="protein sequence ID" value="KRC51417"/>
        <property type="gene ID" value="ASE19_15130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1438002at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC51417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="30826" checksum="FFFB40F79FEDA960" modified="2016-01-20" version="1">MAHPRAQQARELWRHAEPVHAVTYFSAEPLSALRSAGYKGFWMGYFAGRAAPLGPASPELVRALFHNFSADHVARSLPDAWAFAPPAAALAARVDGSVAALLRMLGERLDERAVGRAAELALRAAESAPVDGRALFAANRALPAPTEPLARLWHAATLLREHRGDGHVAALTAADIGGREAHVLHALSSGTPASVYAAARHLDAQEWSALVDGLARRGLVDPAAGLTEAGRELKERVEQQTDVLAASALAVLADEEVAELIALLRPVSAAVVASGDIPRKSPMGLDLGPRPAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6R8</accession>
    <name>A0A0Q8V6R8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_10575</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894780.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52847">
        <property type="protein sequence ID" value="KRC52847"/>
        <property type="gene ID" value="ASE19_10575"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2137330at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="20029" checksum="06EB9574A44D62A7" modified="2016-01-20" version="1">MKRSTRPGPLSETQQRWQELHRRHGVLRRVIDSGRIDEADPDLHAAFPDRDDLVRALVQHWTTLIGGCVDFALEVGEENDSAETLREAHRAAMRREPSLYPLILHASRGPLGAALVEREYLRLACAVGLATPGTSGAAASHAVAVILDGVPLPGALPRMSRVRSALEWVTGPSAAAHPVQELLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6X2</accession>
    <name>A0A0Q8V6X2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rhamnose isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894930.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53000">
        <property type="protein sequence ID" value="KRC53000"/>
        <property type="gene ID" value="ASE19_11435"/>
    </dbReference>
    <dbReference type="OrthoDB" id="283831at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013457">
        <property type="entry name" value="Rhamnose_iso-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02635">
        <property type="entry name" value="RhaI_grampos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="75"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="390" mass="42899" checksum="1E1495333247FDD5" modified="2016-01-20" version="1">MTSQTGFAAIAARLEGQAIELPSWAFGNSGTRFKVFGSAGTPRSVEEKIADAATVHRFTGLAPKVALHIPWDEVDDYAALRAYAGEQGVELGTINSNTFQDDDYKFGALTHVDPKVRQKAIDHHFECIDIMHATGSRDLKIWLAEGSNYPGQADLRGRQDRLAESLSAIYDRIGEEQRLVLEYKFFEPAFYHTDVPDWGTSYAQVSALGERAVVCLDTGHHAPGTNIEFIVMQLLRLGKLGSFDFNSRFYADDDLIVGAADPFQLFRIVFEVIRGGGYGPDSDVAFMLDQCHNVEDKIPGQIRSVLNVQEMTARALLVDREALDAAQSSGDVLGANAVFMDAFYTDVRGDLAAWREERGLPGDPMKAYAESGYQAQIEAARVGGTQLSWN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V725</accession>
    <name>A0A0Q8V725_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">LytR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12450</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895107.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53180">
        <property type="protein sequence ID" value="KRC53180"/>
        <property type="gene ID" value="ASE19_12450"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1958442at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007492">
        <property type="entry name" value="LytTR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04397">
        <property type="entry name" value="LytTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00850">
        <property type="entry name" value="LytTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50930">
        <property type="entry name" value="HTH_LYTTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="5"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="HTH LytTR-type" evidence="3">
        <location>
            <begin position="144"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="242" mass="26674" checksum="255D5AE96BEC130A" modified="2016-01-20" version="1">MSALRVLAVDDERPALDELTYLLDADPRVGEVIACQSATDGLRILREREVDCVFLDIQMPGLSGLELAEVLGRFKQPPPVVFVTAHEKHAVDAFDLHAVDYVLKPVRPERLAEAVRRVLASTAPPAPEPDTQVAVERGGVTRFVDRGDITHVEAHGDYARLHTTSGEAYLVRVPLTTLEEEWAPAGFHRIHRSLLVALGHVTEVRTDAGRTSVMVGATELPVSRRHTRALRDVLVRRAGARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V737</accession>
    <name>A0A0Q8V737_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12465</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895109.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53182">
        <property type="protein sequence ID" value="KRC53182"/>
        <property type="gene ID" value="ASE19_12465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1307482at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018511">
        <property type="entry name" value="Hemolysin-typ_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00330">
        <property type="entry name" value="HEMOLYSIN_CALCIUM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359761" evidence="1">
        <location>
            <begin position="32"/>
            <end position="492"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="492" mass="50342" checksum="B9F3471A81CCBEC8" modified="2016-01-20" version="1">MTRRLPFLLHPALVAALVVPASIGISSSADAATPRCAGVKATIVGTNASQKINGTNGRDVIVARGGHDVVNGRGGADIICGGAGNDTILSGAGNGGLLYGDDGRDTIVAQADDIGLYGGNHDDLLRSSKRLTLFEGGAGNDRIEGSPYPDVIDGGSGNDHVRANGGADKLVTGGSGNDQVYGGDGTDVLRGGPGADQLTLGPGPGGFGFGEDGNDTIVTGDDGQTIHGNAGNDLMKTAFDRSILDGGTGDDRLYGGAGADRITGGDGNDVISAAGGDDVELNGGFGVDTCDGGPGADVCNGGSPGGQVNSPTDPDLCEAEVEKSCQGVGLPERWTGILSGRTYNDRGAGFVDDVTWNLQVTLVKQQDFDGQVFYELETFSGEYSATGTGSCTFRRAGSFEALDEPLFADLRVAPGGDTFYFEMSGPELLEVTMVCPTSERTHLASLFTGGRVIDAPRDPESPTLSGGSRMEFAPGFYREWEFTLGPVVPDLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V780</accession>
    <name>A0A0Q8V780_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_12345</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895089.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53162">
        <property type="protein sequence ID" value="KRC53162"/>
        <property type="gene ID" value="ASE19_12345"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1721089at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359766" evidence="2">
        <location>
            <begin position="33"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="219"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="242" mass="24819" checksum="D4FFE10621C1760F" modified="2016-01-20" version="1">MGISVLTRRPAAFVAAGLLGLSAVAGLTGCGSDEPTGTPVNDVADAKPADALEAARKAMLDLDDVTYRGTVTLAGQSGALKGSAVYTATDDDSCQTTFTNKRQGRLVSRTVGGTTYVRADVAMMRAVLQYDAARAASLKGKWMAAPRLGARECDLADLVPDAGQYDTFEDAGTGEVGGVPVRRFTGKDADGSPSTVSIATEGAPLVLQVRTGPEGASTLTLAERNAGVELPKPPKDKTVNAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7F7</accession>
    <name>A0A0Q8V7F7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative glutamate--cysteine ligase 2</fullName>
            <ecNumber evidence="2">6.3.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Gamma-glutamylcysteine synthetase 2</fullName>
            <shortName evidence="2">GCS 2</shortName>
            <shortName evidence="2">Gamma-GCS 2</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11825</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 2">
            <text>ATP + L-cysteine + L-glutamate = ADP + gamma-L-glutamyl-L-cysteine + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13285"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58173"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.2" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53071">
        <property type="protein sequence ID" value="KRC53071"/>
        <property type="gene ID" value="ASE19_11825"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004357">
        <property type="term" value="F:glutamate-cysteine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042398">
        <property type="term" value="P:cellular modified amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01609">
        <property type="entry name" value="Glu_cys_ligase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006336">
        <property type="entry name" value="GCS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011793">
        <property type="entry name" value="YbdK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04107">
        <property type="entry name" value="GCS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02050">
        <property type="entry name" value="gshA_cyan_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="376" mass="40115" checksum="00F5EA8BD41F7C66" modified="2016-01-20" version="1">MREDGGGGDAMSTRQFGIEEELLLVDGSGAPAPRASDLLARCAGADVLAGTVLEQEFFQAQVEVVTPPLRRLADGEAHLRSGRDALARAGAHLDVSPLAVATPVLVASPGPHVAQDRFARIARHYAGLGGESLMRALHVHVEVVDRGEGIAVLDRVRPWLPLLVALSANSPFWHGRDMGFSSWRSQLWRMWPSSGPHEVFGDVAEYDALILRLLRDQAILDVGLLNLEVRLSARYPTVEFRVADVCTSLEDTLVVAALARGLTETAAREAREGVAPAPWRVDGLRSAGWRAGRFGVSDRLVDPRSGLPVAAAAAFATLLDHVGDALDDAGDLARVTTGVERIVRDGGGAGRQRRAAGADGDLNAVVDDLRVRKLEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7H5</accession>
    <name>A0A0Q8V7H5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 9">GTPase Der</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">GTP-binding protein EngA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">engA</name>
        <name evidence="7" type="synonym">der</name>
        <name evidence="11" type="ORF">ASE19_17160</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 9">GTPase that plays an essential role in the late steps of ribosome biogenesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Associates with the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8 9">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893790.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50321">
        <property type="protein sequence ID" value="KRC50321"/>
        <property type="gene ID" value="ASE19_17160"/>
    </dbReference>
    <dbReference type="OrthoDB" id="263682at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042254">
        <property type="term" value="P:ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00195">
        <property type="entry name" value="GTPase_Der"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031166">
        <property type="entry name" value="G_ENGA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016484">
        <property type="entry name" value="GTP-bd_EngA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032859">
        <property type="entry name" value="KH_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14714">
        <property type="entry name" value="KH_dom-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006485">
        <property type="entry name" value="GTP-binding_EngA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03594">
        <property type="entry name" value="GTPase_EngA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51712">
        <property type="entry name" value="G_ENGA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 9" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5 7 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 7" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="EngA-type G" evidence="10">
        <location>
            <begin position="11"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="domain" description="EngA-type G" evidence="10">
        <location>
            <begin position="185"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="17"/>
            <end position="24"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="64"/>
            <end position="68"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="126"/>
            <end position="129"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="191"/>
            <end position="198"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="238"/>
            <end position="242"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="303"/>
            <end position="306"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC50321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="446" mass="48983" checksum="DEAD7B9895B1CDEC" modified="2016-01-20" version="1">MSEAAPTGVVPVLAVVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYDAEWSGRAFTLVDTGGWDPDARGMAEQIRAQAEIAVSLADAVMFVVDATVGITDADEAVVRVLRKSGKPVVLAANKVDDERTEAEAFGLWNLGLGEPIVVSALHGRGSGDLLDAVLAVLPEAPEREYDAPGGPRRIAIVGRPNVGKSSLLNKLAGEDRVVVDNVAGTTVDPVDELVELGGEAWRFIDTAGIRKRVKEASGHEYYAWLRTSTAIERAEVCVLVLAGNESIAEQDMRILQEVREAGKALVIAFNKWDLVDAERRYYLDREIERDLVQVQWAPRINITAMTGWHIDRLVPALHRAIEGWETRISTGAFNAFLGRIVAEHPHPVRGGKQPRILFGSQVQSAPPVFKLFTTGKLDQGYERFIERRLREEFGFVGTPIEIKVQPREKRGRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7L3</accession>
    <name>A0A0Q8V7L3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_12745</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895687.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53224">
        <property type="protein sequence ID" value="KRC53224"/>
        <property type="gene ID" value="ASE19_12745"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1885467at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005804">
        <property type="entry name" value="FA_desaturase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00487">
        <property type="entry name" value="FA_desaturase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="32"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="60"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="173"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="domain" description="FAD-binding FR-type" evidence="7">
        <location>
            <begin position="335"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="6">
        <location>
            <begin position="588"/>
            <end position="678"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="678" mass="74429" checksum="198D05C51A31E60E" modified="2016-01-20" version="1">METSSRAATVPGAPISASPVRGLPDPGERVPLVAWPTMGLYVATFVLFAIEVAARLAWDWTPWATVPMGAAVTFLMFSVLHESTHHAVSTNTRLNNLAGHLSVPFVVPWATYPLVKFIHIEHHRNTNEPKSVDPDGWCEEGPWWQLPLRWATVDLWYVVFYLRRVRERPRAEVVATVATFLVVAAAFGGLVAAGYGNELVWLFLVPQRFGVLVLGWWFDYLPHHGLTVTQREDKYRATRIRVGGEGLLTPLFVYQNYHLVHHLHPSIPFYRYVRAWRRNEQAYLDRNAAISTWFGRSLTPSEYRTWRRLTDQLTDQRSGLPEQIGHDGEGSAHRPVFHPLRVRSVDRLTADSVAVAFDVPADLVEAYRYRQGQHLTLRAVIDGADVRRSYSLVEPVSAGTLRVAVKQVEGGTFSTYVNQELAVDDILDVMTPTGSFQVALDPAVGRHHVGVVAGSGITPMMSTIATTLEEEPESRFTLVYGNRTTGSTMFADLLDDWVARYGDRLRVHHVLSRQEGSGPAGRITPDRVLELVDAPAAVAAWFLCGPQQMVDDVAAALAELPGSGQVLTEVFHVERAAGAVADGPAVVSDVVVALDGVESRLSLSSAGESILDAALQAGIDAPYSCAGGACGTCRAKVLLGRAVMDQNHVLDDAEIAEGYVLTCQAHPVTDALRIDYDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7N2</accession>
    <name>A0A0Q8V7N2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_12815</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CdaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895700.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53238">
        <property type="protein sequence ID" value="KRC53238"/>
        <property type="gene ID" value="ASE19_12815"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041522">
        <property type="entry name" value="CdaR_GGDEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17853">
        <property type="entry name" value="GGDEF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF_2" evidence="3">
        <location>
            <begin position="185"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_30" evidence="2">
        <location>
            <begin position="346"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="408" mass="44436" checksum="29B3384B2EF85B14" modified="2016-01-20" version="1">MSYDGVPIGIEPWLLAYVAEQAQPEQVDPWVGRVYDAILAEIPDISAIDGLDELLRTTIREHWMAFLADFAQPAQHFHLVGAAQRLSALVADLQLPLEQLIQFYRVAQQEVWVYVSDLIKDLPPSDFDRADLLMFFWNRAGVWLDKSISASIDVYQSARSRVLAGAAAQRYESVKAILAGELGDAREASAALGGYPISVHHTAFVLSVSDAERAGVLESLAGDLVRAVGAANPLVVKPGGRQLWLWVGTRDPLDLTGLATAESSPSRTDACVGVGTSTVGIAGFVASHREAQGALRVAAAGGSSWLARYDEVELPVLLGCSPEVDRFMTRQLGHLVGEEESVQRIRETLMAFLRSGGSAEEAARALVVHRNTIRYRLGQAEELLGRPIAKINPELAVALRHHELFHRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V826</accession>
    <name>A0A0Q8V826_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA helicase</fullName>
            <ecNumber evidence="2">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_13525</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895828.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53366">
        <property type="protein sequence ID" value="KRC53366"/>
        <property type="gene ID" value="ASE19_13525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="114076at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000212">
        <property type="entry name" value="DNA_helicase_UvrD/REP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014016">
        <property type="entry name" value="UvrD-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027785">
        <property type="entry name" value="UvrD-like_helicase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070">
        <property type="entry name" value="PTHR11070"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13538">
        <property type="entry name" value="UvrD_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51198">
        <property type="entry name" value="UVRD_HELICASE_ATP_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UvrD-like helicase ATP-binding" evidence="6">
        <location>
            <begin position="174"/>
            <end position="521"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="195"/>
            <end position="202"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="736" mass="79994" checksum="6482E0BA7DCF2941" modified="2016-01-20" version="1">MTAMHPELQDEQAFVDRAYQLLDKGLADAERNMGEYKAQHRSTAQALQRALRILKESRGTGQLVFGKMTLPDDETLYVGRRRVRDEDFNPVVVGWHADAAQVFYEASPQNPRGLSLKRVFTEEERRLVRVIDEIVGASAAQASEAAGTGMTFGDALLEELDRSRDGAMRDVVATIQAEQYAIIRHPLAGVVVVQGGPGTGKTVVGLHRAAWLAFNYPELRREGILVVAPSTTFLTYVSGVLPSLDVTDVDQVELQALYAGEADIIGLDAPETARVKGSAGMAATLAAALQQRIGWREEELVLSLGADRIRLDGREIQEMIAGIVARGLPHADGREVIRDALATMAADRHRQDQAEQGRPVRANEATIRRLSSFVNAVDRMWPSYTPEEFLRTLYATQAWLVRATDGLMTADERARLYRPLTESVTTEPWTEADLFCLDEIAGLLTRDTVTYGHLVVDEAQDLSPMQARALARRCPSGSFTILGDLAQTTGPWVRDSWTELSAHLSQETPSVLNLSIGYRVPSDVLDLAAHQLPLAGPGLKPPTSIRRGRGAPEVIRTDSEGLKGIAAETAGALLADGLTTAVIVPDAWYDEWLVSEELVPLAPGDGRDGDFAHNLTLVAASGCKGLEFDAVILVEPAVSSAASVQPPRALYVAMTRCTQSLSIVHADALPAGFGDQQNSDEHHRVPPSADDVEVAANGREALIELVERLEMSDVILVAALVRRLIQAEDEELTGEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V856</accession>
    <name>A0A0Q8V856_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14465</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53534">
        <property type="protein sequence ID" value="KRC53534"/>
        <property type="gene ID" value="ASE19_14465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="66" mass="7030" checksum="677BB6080D282536" modified="2016-01-20" version="1">MVMEKPIDEGITSGRIAAEEDVEGHAIKGKVAPSEDDDVEGHAGRLRPVVPEADDDVEGHGVRVKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8B8</accession>
    <name>A0A0Q8V8B8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LacI family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_11465</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895192.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53637">
        <property type="protein sequence ID" value="KRC53637"/>
        <property type="gene ID" value="ASE19_11465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1796334at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="4">
        <location>
            <begin position="13"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="343" mass="36417" checksum="4D12DE87BDEEA60C" modified="2016-01-20" version="1">MANARSGEQGRSVSVKDVASAAGVSVGTVSNVLNRPDKVSPATLAHVQQVIGDLGFIRNDAARQLRAGTNRAVGMVVLDVRNPFFTDVARGVELRLGEHGRPLILGSSGQDAGRESTYLDLFEEQRVSGLLISPVGKVLPRLRRLRERGTAVVVVDRRTGSREFSSVAVDDVRGGRIAATHLIEAGRRRIAFIGGPQGLTQIKHRLRGAEAVVAEHPGTVLRFVETGTMDADAGRRGAESLLALPARERPDAIFAANDLVALGVLQALTLAGVRVPDDVAILGYDDIDFAASAAIPLSSVRQPREEMGSVATDLLLGAMEDPAAQVRDIVLEPELVVRRSTTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8F1</accession>
    <name>A0A0Q8V8F1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH merR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53669">
        <property type="protein sequence ID" value="KRC53669"/>
        <property type="gene ID" value="ASE19_13155"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1467120at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="9"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="234" mass="25715" checksum="EF48097B715B971F" modified="2016-01-20" version="1">MTVPDASDLLTLEQLTERTGLTVRTVRFYTSRGLVPPPIRRGRSGYYSAEHIARIELVLELQSHGFTLSAIERYVAGIPDDATPEEIALARTMLAPWQSDLPVEMDRVALEKKAGRALTADDVATLQALGVLRLRGSSYLVASNQLAIGIRLLELGFPREVAVAAAAVYQEHGEQMAKELYEVINSQLAPLYDDAATSEHFREIMERLKPLSVGGLVTAYESAVARAARNPRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8N0</accession>
    <name>A0A0Q8V8N0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Haloacid dehalogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_14515</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896961.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53542">
        <property type="protein sequence ID" value="KRC53542"/>
        <property type="gene ID" value="ASE19_14515"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1167152at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01509">
        <property type="entry name" value="HAD-SF-IA-v3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="248" mass="25755" checksum="DCD661B6CD8FCC59" modified="2016-01-20" version="1">MDWNLYDAVLFDLDGVVTPTAEVHMHAWEAMFTSFVTARSAADGIAYPPYGEQDYFQYVDGKPRYDGVRSFLDSRGITLPEGDPDDPPTAETVCGLGNRKNDAFNQILAAEGVQAYPGSVALIERLHADGKPMAVVSSSRNAPAVVAAAGLTDYFGLIMHGGLAEELGLPGKPAPDTFTHAAEVLGATDARSVVLEDAINGVAAGHAGGFGLVIGVDRGAGAEALTAAGAQLVVRDLAELVPGEGEQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V941</accession>
    <name>A0A0Q8V941_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06845</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53804">
        <property type="protein sequence ID" value="KRC53804"/>
        <property type="gene ID" value="ASE19_06845"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2078259at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="141"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="156" mass="16500" checksum="0DF8DF2429C76BDD" modified="2016-01-20" version="1">MIPRRSVTHPSFAGPVGTFPATRLRELIQMIQDSGGNEPQPQDADDQRLTGGQPVGEADEEQARREELEYGDSGTAVSPDTQRSDPGAAEDLGDTDGLSSRGQSADDEGQAPPGTADEDRNPDQDVDPSTSRYAPEADDVSGADVIHEARARNAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9V4</accession>
    <name>A0A0Q8V9V4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_15330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896518.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51453">
        <property type="protein sequence ID" value="KRC51453"/>
        <property type="gene ID" value="ASE19_15330"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1542347at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029046">
        <property type="entry name" value="LolA/LolB/LppX"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89392">
        <property type="entry name" value="SSF89392"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359833" evidence="1">
        <location>
            <begin position="25"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC51453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="235" mass="25649" checksum="671A4F2B8290C8D3" modified="2016-01-20" version="1">MVRIVSAVLTAFLLSLGLAGCGEQESTEADDADTFEPYTRETLLVAMGKAVESHPTVRMQFEGAGEKMDLRMRMGGVDEVAMSGTIEGDDEPFEMILVGSEVYGRDQGDEKYMRFPDDISGPILADMGDMSPQGMIDDMRDSIETMEYVGAETLDGAEVQRYDVTVSQAALVEKLGAKAKGLRVTYRMWLDERDLITKMTVAVMGVEMVATMSEWGEPFDVKAPPASQVEAFPGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9V8</accession>
    <name>A0A0Q8V9V8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ethanolamine utilization protein EutM</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_07275</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895308.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53876">
        <property type="protein sequence ID" value="KRC53876"/>
        <property type="gene ID" value="ASE19_07275"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1802372at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031469">
        <property type="term" value="C:bacterial microcompartment"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1710">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000249">
        <property type="entry name" value="BMC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037233">
        <property type="entry name" value="CcmK-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044872">
        <property type="entry name" value="CcmK/CsoS1_BMC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00936">
        <property type="entry name" value="BMC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00877">
        <property type="entry name" value="BMC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143414">
        <property type="entry name" value="SSF143414"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51930">
        <property type="entry name" value="BMC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1283">Bacterial microcompartment</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BMC" evidence="2">
        <location>
            <begin position="5"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00024446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="93" mass="9328" checksum="1D6C902DDDC5E5E3" modified="2016-01-20" version="1">MSSTAIGMIETKGFVAALAAADAMVKAANVTITDRQEVGDGLIAVVISGEVGAVKAATEAGAETASQVGELVSVHVIPRPHAELGNHFDVSAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAD0</accession>
    <name>A0A0Q8VAD0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">5-formyltetrahydrofolate cyclo-ligase</fullName>
            <ecNumber evidence="3">6.3.3.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_06880</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>(6S)-5-formyl-5,6,7,8-tetrahydrofolate + ATP = 5,10-methenyltetrahydrofolate + ADP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10488"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57455"/>
            <dbReference type="ChEBI" id="CHEBI:57457"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.3.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.3.2" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895620.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54188">
        <property type="protein sequence ID" value="KRC54188"/>
        <property type="gene ID" value="ASE19_06880"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1816478at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030272">
        <property type="term" value="F:5-formyltetrahydrofolate cyclo-ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002698">
        <property type="entry name" value="FTHF_cligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024185">
        <property type="entry name" value="FTHF_cligase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23407:SF1">
        <property type="entry name" value="PTHR23407:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01812">
        <property type="entry name" value="5-FTHF_cyc-lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006806">
        <property type="entry name" value="FTHF_cligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02727">
        <property type="entry name" value="MTHFS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="168"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="3"/>
            <end position="7"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="132"/>
            <end position="140"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006806-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU361279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="195" mass="20430" checksum="D8E481A4E6861533" modified="2016-01-20" version="1">MRKLALRDQLLTARKRRPLAEVGEAARSIADVLLAAEEVRRAATVACYVSVGAEPGTTALLDRLVDAGKRVILPVLLPDNDLDWAPFTGPASLAPARRGLLEPLSPAVGVDAIAGADAVLVPGLAVGADGVRMGRGGGSYDRALGRVPVGTFTCILLYDDELLPDVPAEPHDRPVTAAASPSGLTRFPLNQQSRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAF7</accession>
    <name>A0A0Q8VAF7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Carboxylate--amine ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16655</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893700.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50231">
        <property type="protein sequence ID" value="KRC50231"/>
        <property type="gene ID" value="ASE19_16655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="834483at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10900">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008492">
        <property type="entry name" value="DUF774"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019151">
        <property type="entry name" value="Proteasome_assmbl_chaperone_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038389">
        <property type="entry name" value="PSMG2_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09754">
        <property type="entry name" value="PAC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028754">
        <property type="entry name" value="UCP028754"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="282" mass="31250" checksum="C1885020D21CB3B0" modified="2016-01-20" version="1">MMEIETVTGLVRPVVIAAFEGWNDAAESATAVVDHLMKVWDARVVAAIDPEEFYDFQVNRPTVGIDENGFRKLTWPSTHVSVASPPALDRDVILIRGIEPNMKWRQFSTELLDVIDQLGGEMLVTLGALLSDSPHTRPIPVSGSSTEPDLMERLDLEQSTYEGPTGIVGVLQDACTTVDLPAVSYWAAVPHYVAQPPCPKATLALLSRLEDFFETPIPLGDLPEEARAWERGVDELAEEDEDIADYVRSLEESRDTADLPEASGEAIAREFERYLKRRGEDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAW7</accession>
    <name>A0A0Q8VAW7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894704.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52771">
        <property type="protein sequence ID" value="KRC52771"/>
        <property type="gene ID" value="ASE19_10155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="76" mass="8732" checksum="3DE4259CD7D207F6" modified="2016-01-20" version="1">MKLLLVVLVFAAATYLAIRWMQDRGLGGQSAPRRPSRPQPPARPVAPDDDESFLRDLDWQRRKERRQPKPPDNPDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBE1</accession>
    <name>A0A0Q8VBE1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Nitrite reductase small subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_14995</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896461.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51394">
        <property type="protein sequence ID" value="KRC51394"/>
        <property type="gene ID" value="ASE19_14995"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1681886at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008942">
        <property type="term" value="F:nitrite reductase [NAD(P)H] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042128">
        <property type="term" value="P:nitrate assimilation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03529">
        <property type="entry name" value="Rieske_NirD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017881">
        <property type="entry name" value="NirD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012748">
        <property type="entry name" value="Rieske-like_NirD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40562">
        <property type="entry name" value="PTHR40562"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13806">
        <property type="entry name" value="Rieske_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02378">
        <property type="entry name" value="nirD_assim_sml"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0534">Nitrate assimilation</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rieske" evidence="5">
        <location>
            <begin position="7"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC51394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="118" mass="12805" checksum="3818E95FD858B55A" modified="2016-01-20" version="1">MRAAEEWQPVCRMIELEVDRGVTALVHGQAVAIFRTGDDIVYALGNHDPFARHTAGGISRGIVGRRGETPFVASPAHRHAFDLRTGKCLDDHHVTVPAYDVKVVEGVVLIGSRKLPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBG5</accession>
    <name>A0A0Q8VBG5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Anthranilate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12655</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895672.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53209">
        <property type="protein sequence ID" value="KRC53209"/>
        <property type="gene ID" value="ASE19_12655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1561172at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071704">
        <property type="term" value="P:organic substance metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd01743">
        <property type="entry name" value="GATase1_Anthranilate_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006221">
        <property type="entry name" value="TrpG/PapA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00566">
        <property type="entry name" value="trpG_papA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GATase" evidence="1">
        <location>
            <begin position="7"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="181" mass="19521" checksum="8F9BD5437F825452" modified="2016-01-20" version="1">MTRPDVVVVDHHDSYTWNLVHLVAEVTGVLPAVVQWDDPVDLAAYSHVVLSPGPGHPDEYTWSFDTGRPVLGVCLGMQALVVAYGGEVDRVAPAHGTVETVTHDGRGVFAGVPTPLEAVRYHSLAAVRLPDELEATAWAADGTVMGVRHRELPLEGVQFHPESVLSRHGARLVANFLDVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC56</accession>
    <name>A0A0Q8VC56_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SnoaL-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04910</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894271.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54810">
        <property type="protein sequence ID" value="KRC54810"/>
        <property type="gene ID" value="ASE19_04910"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1736098at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13577">
        <property type="entry name" value="SnoaL_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="4"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="149" mass="16485" checksum="4DB08E146247DDDF" modified="2016-01-20" version="1">MGSADDAREIERLLYSYADAVDAGDLAAVGDLFRDGRVCGETPDGPVTLAEGSEAVEAFYRSLVRMYDDGTPRTRHVTTNVGVDVDSRAGTASAASTYTVFQATDELPLQAIIVGRYRDTFRRTRGRWWFESRTMRADLTGDLSQHLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCC1</accession>
    <name>A0A0Q8VCC1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Thiol peroxidase</fullName>
            <shortName evidence="2">Tpx</shortName>
            <ecNumber evidence="2">1.11.1.24</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Peroxiredoxin tpx</fullName>
            <shortName evidence="2">Prx</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Thioredoxin peroxidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Thioredoxin-dependent peroxiredoxin</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2 4" type="primary">tpx</name>
        <name evidence="4" type="ORF">ASE19_04585</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>[thioredoxin]-dithiol + a hydroperoxide = [thioredoxin]-disulfide + an alcohol + H2O</text>
            <dbReference type="Rhea" id="RHEA:62620"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:30879"/>
            <dbReference type="ChEBI" id="CHEBI:35924"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.11.1.24"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="2">The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this atypical 2-Cys peroxiredoxin, C(R) is present in the same subunit to form an intramolecular disulfide. The disulfide is subsequently reduced by thioredoxin.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peroxiredoxin family. Tpx subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.24" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894324.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54758">
        <property type="protein sequence ID" value="KRC54758"/>
        <property type="gene ID" value="ASE19_04585"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1738458at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008379">
        <property type="term" value="F:thioredoxin peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03014">
        <property type="entry name" value="PRX_Atyp2cys"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00269">
        <property type="entry name" value="Tpx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013740">
        <property type="entry name" value="Redoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002065">
        <property type="entry name" value="TPX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018219">
        <property type="entry name" value="Tpx_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08534">
        <property type="entry name" value="Redoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01265">
        <property type="entry name" value="TPX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0049">Antioxidant</keyword>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 4" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="2" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="3">
        <location>
            <begin position="18"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine sulfenic acid (-SOH) intermediate" evidence="2">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="2">
        <location>
            <begin position="58"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00269"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="163" mass="16736" checksum="1607876DAD2A6A4F" modified="2016-01-20" version="1">MATTALGGNPVHTVGELPAVGAPAPAFDLVGSDFAEVSLPQGTRAVLNIFPSVDTGVCAASVRKFNELAAGLDNTTVINVSQDLPFAQARFCGAEGIENVTTASAFRTTFGEDYGVKLVDGKFEGLLARSVVVVDADGSVLHTELVPEIAQEPDYDAAIAALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCI6</accession>
    <name>A0A0Q8VCI6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_04985</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894259.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54822">
        <property type="protein sequence ID" value="KRC54822"/>
        <property type="gene ID" value="ASE19_04985"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1475841at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="6"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC54822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="235" mass="24701" checksum="464E9F2A6AB6AE5C" modified="2016-01-20" version="1">MSVPILDVVDLHAAYGRIEVLRGVDLSVPKGAVMALLGPNGAGKSTLVKVISGQKEATSGDIHLAGVHVRNAKSDDLARVGLCTVPEGRSVFPNLTVEENLRLMSYAGVPTAAILETAYSYFPRLHERRNQLAGTMSGGEQQMLAMSRALASDPALLLLDELSMGLAPLIVEELYDTVARIAESGVSILCIEQFARTALRVSDYAAVMSGGRIVATGEPGEILDTMADVILGGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCK1</accession>
    <name>A0A0Q8VCK1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05060</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894245.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54836">
        <property type="protein sequence ID" value="KRC54836"/>
        <property type="gene ID" value="ASE19_05060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2069936at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359904" evidence="2">
        <location>
            <begin position="26"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="136" mass="14057" checksum="B849F4DE097F5ECB" modified="2016-01-20" version="1">MARLPHRFVLPIALLAALPALAACGDDSEPTARDEPTSASPTGAPDTSEPAAPTSTPPDLPACADLWVEGEVLASPYAGCLEPDGAVSKSLIGCVNRKVAQHGDDLYAIVGGRIVRAEPNRNHNDVYLDLLASCTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCX4</accession>
    <name>A0A0Q8VCX4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_12565</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the group II decarboxylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53657">
        <property type="protein sequence ID" value="KRC53657"/>
        <property type="gene ID" value="ASE19_12565"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016830">
        <property type="term" value="F:carbon-carbon lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019752">
        <property type="term" value="P:carboxylic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002129">
        <property type="entry name" value="PyrdxlP-dep_de-COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00282">
        <property type="entry name" value="Pyridoxal_deC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0456">Lyase</keyword>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3">
        <location>
            <position position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR602129-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="477" mass="51077" checksum="9EC87FDB51AF95CF" modified="2016-01-20" version="1">MHHVFHPDHADHYAAALGTGLDHLLRHLKGVAGPATGVQPDEAAARVAAIDLDVPLTGVDDVLAEMSHLWLDDAVWFHEPRYAAHLNCPVVVPALLAELFVASVNSSLDTFDQSVGGTFIERRLVEWTAERIGFGPDADGVFTSGGSQSNLQGLLLARGRHERVPAERLRILASAESHFSVQKSARLLGLGEESVISVPTDARHRMDAVALGRSLAACADLNLRPMAIVATAGTTDFGAIDPLPAIADLARAHDTWLHVDAAYGGGLLVSPTRRDLLEGIDRADSVTIDFHKTFFQPVSSSAIIVRDRATLHPATWHADYLNPREATTPNQVDKSLQTTRRFDALKLWLTLRSMGPDLVGGYVDAVIDLAAAVHARTSHEPELEFAAAPELSTLVFRYVPTGLDLDDAALALLNTSLRSELYASGTAMVAATRVDGVQYLKLTLLNPMATVDDIVGILDTVRSCGARLAGVPAGAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDM3</accession>
    <name>A0A0Q8VDM3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Guanylate cyclase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_06075</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the adenylyl cyclase class-3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55156">
        <property type="protein sequence ID" value="KRC55156"/>
        <property type="gene ID" value="ASE19_06075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004016">
        <property type="term" value="F:adenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009190">
        <property type="term" value="P:cyclic nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07302">
        <property type="entry name" value="CHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001054">
        <property type="entry name" value="A/G_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00211">
        <property type="entry name" value="Guanylate_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00044">
        <property type="entry name" value="CYCc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50125">
        <property type="entry name" value="GUANYLATE_CYCLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Guanylate cyclase" evidence="2">
        <location>
            <begin position="103"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC55156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="268" mass="29139" checksum="1E9A085F97F847E0" modified="2016-01-20" version="1">MCLLLAVVIVGFARDRGRLQRQLADAQHHITQLESDLDAALRPPPPSNSADRAVRRVIRAASKVREHGITGLIQSTVEDLQSWASDDERADILNMAASDGTVTLFFSDIEDSTPLNDRLGDSTWVKVLAAHDRVLRAQIDKYRGQVVKTAGDGFMVAFRDAEAACRAALGIQRDLPRDVTLRRYGPILVRIGIHTGQVVARDGDYFGRNVAMAARVANLAHGGETLASDAVREALDDDAAVVLVERDAVELKGLPGEHVVWELLPPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VDT3</accession>
    <name>A0A0Q8VDT3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_07645</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895376.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53945">
        <property type="protein sequence ID" value="KRC53945"/>
        <property type="gene ID" value="ASE19_07645"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="166" mass="18592" checksum="80140E055176C59F" modified="2016-01-20" version="1">MVDVAPIAAEQARLVAGRLYRQARRGRDRGEVTAEIELVAQQAGLTYRELVDAVLAAQRRWEASVPTDTYGPGDRVIDSNGTEYDVTELLGAVGESPWLRLRRVADQRDLTWFPGPRLRLIRRADAEVDATPEKDPVELWARSVVDPVIAKAEQRRTAAGSRHRPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEB0</accession>
    <name>A0A0Q8VEB0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RNA 2',3'-cyclic phosphodiesterase</fullName>
            <shortName evidence="2">RNA 2',3'-CPDase</shortName>
            <ecNumber evidence="2">3.1.4.58</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_11390</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'-phosphomonoester.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a 3'-end 2',3'-cyclophospho-ribonucleotide-RNA + H2O = a 3'-end 2'-phospho-ribonucleotide-RNA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:11828"/>
            <dbReference type="Rhea" id="RHEA-COMP:10464"/>
            <dbReference type="Rhea" id="RHEA-COMP:17353"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:83064"/>
            <dbReference type="ChEBI" id="CHEBI:173113"/>
            <dbReference type="EC" id="3.1.4.58"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the 2H phosphoesterase superfamily. ThpR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.58" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894922.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52992">
        <property type="protein sequence ID" value="KRC52992"/>
        <property type="gene ID" value="ASE19_11390"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1696971at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004113">
        <property type="term" value="F:2',3'-cyclic-nucleotide 3'-phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008664">
        <property type="term" value="F:2'-5'-RNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01940">
        <property type="entry name" value="RNA_CPDase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009097">
        <property type="entry name" value="Cyclic_Pdiesterase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014051">
        <property type="entry name" value="Phosphoesterase_HXTX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004175">
        <property type="entry name" value="RNA_CPDase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35561">
        <property type="entry name" value="PTHR35561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02834">
        <property type="entry name" value="LigT_PEase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55144">
        <property type="entry name" value="SSF55144"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02258">
        <property type="entry name" value="2_5_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LigT_PEase" evidence="3">
        <location>
            <begin position="10"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="HXTX 1" evidence="2">
        <location>
            <begin position="39"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="HXTX 2" evidence="2">
        <location>
            <begin position="125"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01940"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC52992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="19954" checksum="5CB58B9BBF2B0961" modified="2016-01-20" version="1">MRVFAAVVPPADAVEHLDAFLEPRRAAGEFRWTRPEQLHVTLAFMAQVAELRVDDYVDRLAESLDDLPSAELSLAGAVVFPNVAEGRVLATGVTGADVLATASVRARNAAVVCGIEVDGQRFRPHVTVARTGGRPTEMTSWVRLLDTYAGPAWPLRSVEVIASHLGEGPRRSPRYETLAEIVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEE3</accession>
    <name>A0A0Q8VEE3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11105</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894878.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52945">
        <property type="protein sequence ID" value="KRC52945"/>
        <property type="gene ID" value="ASE19_11105"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1473468at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="260" mass="28773" checksum="966DF816915142FC" modified="2016-01-20" version="1">MTRTNHHHTSVGRPLADDLGHPVPLTAPARRIVSLVPSITEALATDVPDRLVGATDWCTHPADLDVTRVRGTKNPDLAALRALEPDLVVANKEENRELDVRRLRDAGVAVWVTDIETVPQALDSLDRLYDEALGLARPTWLEAARSRWSGPVPEARGRAVVPVWRDPWLVVGPRTYTGDLLRRLGWVNAFDDGPDRYPTVPLGAIDRDDVDLVLLPDEPYVFTEDDGPEAFTKVPTRLVSGRLLTWYGPAMVEAHDTLAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VF66</accession>
    <name>A0A0Q8VF66_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Multidrug ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_09490</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894596.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52658">
        <property type="protein sequence ID" value="KRC52658"/>
        <property type="gene ID" value="ASE19_09490"/>
    </dbReference>
    <dbReference type="OrthoDB" id="643917at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="58"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="139"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="218"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="241"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="318"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="10">
        <location>
            <begin position="59"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="419"/>
            <end position="653"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="452"/>
            <end position="459"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC52658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="660" mass="71647" checksum="AFA518A1C791D3BD" modified="2016-01-20" version="1">MAEQTGQQKGTMRTTERIVQQGGPGRGPMGGMVGQKADDFGSSGRRLLGLLRPARGRAIAVLVLGIGSVASVAVGPYLMGKATDAVFSGLIGGQIRPGVTKAEVVAQAEAKGDDGMAGFLRGLDFVPGQGVDFDKVGHILLITLMIYVGGQVLGWLQGYLVNDIVQATVRRMRTDVEEKVHRLPLSYFDRQPRGELLSRVTNDIDNVAQNLQQTMSQLLTSILMVVGVLGMMFWVSPLLALIALVSVPIAMFTTGRVMKRSQGQFINQWRQTGRLNAQVEESISGHALVTVFGQRGTVEAEFDDANEQLYQSSYRAQFISGLVMPMMMLIGNLNYVVIAVVGGLRVASGSLSLGEVQAFIQYSRMFTQPITQIASMANLLQSGVASAERVFELLDAEEEVDPSSLSTEPERSTTTRGEVAFEHVSFSYDADEPLIEDLSLVAHPGQMVAIVGPTGAGKTTLVNLIMRFYELDGGRITLDGVDVKELSRAELRSRIGMVLQDTWLFEGTIRDNIAYGRPGASEDEIREAARATYVDRFVHSLPEGYDTRVDDEGSNLSAGERQLITIARAFLAQPALLILDEATSSVDTRTELLLQQAMAALRTDRTSFVIAHRLSTIRDADLILVMEHGRIVEQGSHAELLERDGAFARLHAAQFAAASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG13</accession>
    <name>A0A0Q8VG13_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RNA polymerase subunit sigma-24</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">ASE19_14130</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Interacts transiently with the RNA polymerase catalytic core formed by RpoA, RpoB, RpoC and RpoZ (2 alpha, 1 beta, 1 beta' and 1 omega subunit) to form the RNA polymerase holoenzyme that can initiate transcription.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897031.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53472">
        <property type="protein sequence ID" value="KRC53472"/>
        <property type="gene ID" value="ASE19_14130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1335404at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014303">
        <property type="entry name" value="RNA_pol_sigma-70_ECF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02957">
        <property type="entry name" value="SigX4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="6">
        <location>
            <begin position="7"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="7">
        <location>
            <begin position="102"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011344"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC53472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="289" mass="31714" checksum="1416F831574146D9" modified="2016-01-20" version="1">MSDPFVAHRNLLFTVAYEMLGSAADAEDVVQETWLRWAAVDHDAIDEPRAYLVRIVTRQALNRLRTLARRREDYVGEWLPEPLLTAPDVAEDVELAESVSIAMLTVLETLGPTERAVFVLREVFDLPYDEIGDAVGKTSAAVRQIALRARNHVAARRPRVDVDRREQQQVVERFLAAVRTGDLQALMDAMAPDVLLRADGGGIANAIRKPLAGAEPVARLLANFAVFAPDGVLDLVWLNGAPAVLIRAGGEISAVSFRIEDGLIGNIYVVRNPHKLTALDAETLLSREG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGG7</accession>
    <name>A0A0Q8VGG7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_11840</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895004.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53074">
        <property type="protein sequence ID" value="KRC53074"/>
        <property type="gene ID" value="ASE19_11840"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1885467at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000951">
        <property type="entry name" value="Ph_dOase_redase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00409">
        <property type="entry name" value="PHDIOXRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="6">
        <location>
            <begin position="18"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="5">
        <location>
            <begin position="245"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC53074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="330" mass="35673" checksum="E65A1A18C4C73610" modified="2016-01-20" version="1">MNTQTTIRGPLISMAGPAFDGDVVVVGKTRAATGVAVLTLSAVSGARLPSWTPGSHVDLDIPDLPTRQYSLCGDPSDRDTYRIGVLLDPGGGGTSWHIHEVLDVGDTVHLRGPRNHFPLLEASRYIFVAGGIGITPLLPMLAHAEEAGAHWLLEYGGRTRGSMAFVEQLQRYGDKVRYSPEDETGILDLAVILGHPRDDTLIYCCGPEPLLAAVEAHAVNWPPGALRLERFSPRIAWDSGGAEEFQVVLARSNRQVSVPSDHSILDAVRAAGVNVESSCREGVCGTCEVAVLEGIPDHRDSVLDEDERKRNDCMMICVSRARSERLVLDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VGX2</accession>
    <name>A0A0Q8VGX2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02590</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892748.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56730">
        <property type="protein sequence ID" value="KRC56730"/>
        <property type="gene ID" value="ASE19_02590"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041669">
        <property type="entry name" value="TetR_C_15"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17918">
        <property type="entry name" value="TetR_C_15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="15"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="205" mass="22751" checksum="57D8174C89348DCD" modified="2016-01-20" version="1">MAQKQRALPRQVRAVQTRRLLLDTAVRILDQHGADRLTTTAVIERSHVSSGTFYRYFNDRNELLEVLRDEAVRAISDDLMVSVVDALELDLDAALRLIVVTLVDGFERHRGVITAMVNQMPAGNNANVLPEIEGDLQRLASLLPRRHRPDLPPEQLEGVVFMLMGVLVSTCLRTALARPDGVDRDQLVDLTVAMIGAGLKDSPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH72</accession>
    <name>A0A0Q8VH72_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Homoserine kinase</fullName>
            <shortName evidence="11">HK</shortName>
            <shortName evidence="11">HSK</shortName>
            <ecNumber evidence="4 11">2.7.1.39</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">thrB</name>
        <name evidence="14" type="ORF">ASE19_03270</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <reference evidence="14 15" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + L-homoserine = ADP + H(+) + O-phospho-L-homoserine</text>
            <dbReference type="Rhea" id="RHEA:13985"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57476"/>
            <dbReference type="ChEBI" id="CHEBI:57590"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.39"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 4/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the GHMP kinase family. Homoserine kinase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.39" evidence="4 11"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892859.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56842">
        <property type="protein sequence ID" value="KRC56842"/>
        <property type="gene ID" value="ASE19_03270"/>
    </dbReference>
    <dbReference type="OrthoDB" id="610857at2"/>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00064"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004413">
        <property type="term" value="F:homoserine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00384">
        <property type="entry name" value="Homoser_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013750">
        <property type="entry name" value="GHMP_kinase_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036554">
        <property type="entry name" value="GHMP_kinase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006204">
        <property type="entry name" value="GHMP_kinase_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006203">
        <property type="entry name" value="GHMP_knse_ATP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000870">
        <property type="entry name" value="Homoserine_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08544">
        <property type="entry name" value="GHMP_kinases_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00288">
        <property type="entry name" value="GHMP_kinases_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000676">
        <property type="entry name" value="Homoser_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55060">
        <property type="entry name" value="SSF55060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00191">
        <property type="entry name" value="thrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00627">
        <property type="entry name" value="GHMP_KINASES_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 11 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="8 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0791">Threonine biosynthesis</keyword>
    <keyword evidence="6 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GHMP_kinases_N" evidence="12">
        <location>
            <begin position="85"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="GHMP_kinases_C" evidence="13">
        <location>
            <begin position="226"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="92"/>
            <end position="102"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF08544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KRC56842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="305" mass="30982" checksum="15D93B1D72CD49FD" modified="2016-01-20" version="1">MTFVDGPVRATVPATSANLGPGFDTLGLALDLRDTLEAEVLPEGLVVEVEGYGAGQVPLDERHLVVRAMRATFERLGQSPAGLRLSCTNVIPHARGLGSSSAAIVGGVWLARELVAGGRLLLDDGALLDLAAQLEGHPDNVAPALLGGFVISGQDADGSFWAVPGSVDPRVGAVVFVPPTPVSTEAARGLLPADVPHADAAANAGRAALLVAALSGRPEQLLRATEDRLHQEYRRPAMPESLALVEALRADGVPAVVSGAGPTVLAFADGPGTTSAAALLARCPEGWQAHALAVTGTGAALSDLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHE5</accession>
    <name>A0A0Q8VHE5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NADPH-dependent 2,4-dienoyl-CoA reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_03695</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the NADH:flavin oxidoreductase/NADH oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892934.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56917">
        <property type="protein sequence ID" value="KRC56917"/>
        <property type="gene ID" value="ASE19_03695"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1308229at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="2">
        <location>
            <begin position="13"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="3">
        <location>
            <begin position="374"/>
            <end position="624"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="667" mass="71531" checksum="4449855EA467EF55" modified="2016-01-20" version="1">MTSYPLLTSKAVVGGLELQSRAVMGSMHTGLEDRPWHIDEMAAYFAERAAGGVGLIVTGGYAPNVRGWLLPFGSQMTTRMNAHRHQRVTDAVHENGGKIALQILHAGRYGYTPFSVSASATKSPITPFKASALSTRAVEKTVQDFVASARLAQKAGYDGVEIMGSEGYLINQFLAARTNRRTDKWGGSAEARMRFPVEVVRRIRQELPDFFVMYRMSLLDLVPDGQTWDETVELAHRIEAAGASVINTGIGWHEARVPTIVTSVPRGAWVDSTLRLKGVVDIPVCASNRINTPDLAEAILEQGIDLVSMARPFLADSELVNKARDGRADEINTCIGCNQACLDHTFQAKRASCLVNPRACHETTLVLGPTRAAKRVAIVGGGPAGLATAVSAAERGHDVTLFEANDEIGGQFRLAMQIPGKEEFAETLRYFRRRMEVLGVNVKLATRATPELLSGYDEVVVATGVAPRTPSIPGIDHAKVVSYPDAITGRVAIGGKVAVMGAGGIGFDVTELLAHTPETVEEWKAHWGVADPAVVRGGVTDKAPRTPAREVWLLQRKESTQGKGLGKTSGWVHRAAVKDLGVHQLSGVSYDRVDDAGLHITVDGSPKVLDVDHVVVCAGQESVRGLYDELLASAFTGRVHLIGGADVAAELDAKRAIKQGTELAAAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHF0</accession>
    <name>A0A0Q8VHF0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">50S ribosomal protein L31</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpmE</name>
        <name evidence="8" type="ORF">ASE19_03260</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <reference evidence="8 9" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Binds the 23S rRNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_038678102.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56840">
        <property type="protein sequence ID" value="KRC56840"/>
        <property type="gene ID" value="ASE19_03260"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2014569at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.830.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00501">
        <property type="entry name" value="Ribosomal_L31_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034704">
        <property type="entry name" value="L28p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002150">
        <property type="entry name" value="Ribosomal_L31"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027491">
        <property type="entry name" value="Ribosomal_L31_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042105">
        <property type="entry name" value="Ribosomal_L31_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33280">
        <property type="entry name" value="PTHR33280"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01197">
        <property type="entry name" value="Ribosomal_L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01249">
        <property type="entry name" value="RIBOSOMALL31"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143800">
        <property type="entry name" value="SSF143800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00105">
        <property type="entry name" value="L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01143">
        <property type="entry name" value="RIBOSOMAL_L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KRC56840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="71" mass="7742" checksum="231AF2A84E555605" modified="2016-01-20" version="1">MKKDIHPDYVVTQVTCTCGASFTTRSTATSGSIHADVCSQCHPFYTGKQKILDTGGRVARFEARYAKAAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHH9</accession>
    <name>A0A0Q8VHH9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">UDP-glucose 6-dehydrogenase</fullName>
            <ecNumber evidence="4 7">1.1.1.22</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">ASE19_07150</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>H2O + 2 NAD(+) + UDP-alpha-D-glucose = 3 H(+) + 2 NADH + UDP-alpha-D-glucuronate</text>
            <dbReference type="Rhea" id="RHEA:23596"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58052"/>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
            <dbReference type="EC" id="1.1.1.22"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Nucleotide-sugar biosynthesis; UDP-alpha-D-glucuronate biosynthesis; UDP-alpha-D-glucuronate from UDP-alpha-D-glucose: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.22" evidence="4 7"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895288.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53856">
        <property type="protein sequence ID" value="KRC53856"/>
        <property type="gene ID" value="ASE19_07150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="647136at2"/>
    <dbReference type="UniPathway" id="UPA00038">
        <property type="reaction ID" value="UER00491"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003979">
        <property type="term" value="F:UDP-glucose 6-dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006065">
        <property type="term" value="P:UDP-glucuronate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017476">
        <property type="entry name" value="UDP-Glc/GDP-Man"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014027">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036220">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014026">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001732">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028357">
        <property type="entry name" value="UDPglc_DH_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00984">
        <property type="entry name" value="UDPG_MGDP_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03720">
        <property type="entry name" value="UDPG_MGDP_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03721">
        <property type="entry name" value="UDPG_MGDP_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500134">
        <property type="entry name" value="UDPglc_DH_bac"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000124">
        <property type="entry name" value="UDPglc_GDPman_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00984">
        <property type="entry name" value="UDPG_MGDP_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52413">
        <property type="entry name" value="SSF52413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03026">
        <property type="entry name" value="NDP-sugDHase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 10" id="KW-0520">NAD</keyword>
    <keyword evidence="5 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDPG_MGDP_dh_C" evidence="11">
        <location>
            <begin position="300"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="142"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="242"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="8">
        <location>
            <position position="253"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="197"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="250"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="256"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="306"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="307"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="314"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="388"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR000124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR500134-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR500134-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR500134-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC53856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="388" mass="42662" checksum="DD459BA52FDE2BB2" modified="2016-01-20" version="1">MKITVVGAGYVGLSNAVLLARYNDVTVLDVSAERVAAVNEGRSPIVDAELEEHLARGGLSLHATRDRKEAYADATFVVVATPTNYDPETNYFDTSTVEKVTADALAANPAATVVVKSTVPVGYTNTLRDRHPGASILFSPEFLREGRALHDNLHPSRIVIGSDTEPGRLFAKLLTQAALDHDVPVLFTGSTEAEAIKLFANTYLALRVAYFNELDTYAATHGLATRQIIEGVGLDPRIGGHYNNPSFGYGGYCLPKDTKQLQANYRQVPQNLISAIVDANTTRKEFIADDVLRRGPKVVGIYRLTMKAGSDNFRESAVQGVMKRIKARGVKVVVFEPELDQKRFFNSKVIKDLDEFKARADVIIANRRTDVLDDVADKVYTRDIYGRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHM2</accession>
    <name>A0A0Q8VHM2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Fimbrial assembly protein FimA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_02570</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892744.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56726">
        <property type="protein sequence ID" value="KRC56726"/>
        <property type="gene ID" value="ASE19_02570"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1771686at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010430">
        <property type="entry name" value="DUF1028"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06267">
        <property type="entry name" value="DUF1028"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="272" mass="28287" checksum="839E7DF5566454FF" modified="2016-01-20" version="1">MTFSIVARSADGETWGVAVASKFLAVGSAVPAAVAGVGALATQADANVAYKGLALSHLDEGATAAVALQRLIEEDSGYAHRQVGIVDLDGNAASHTGTECIPWAGGRTGDGYAVQGNCLAGEEVVDEMERAWLESDAEAALQDRLMAALAAGDAAGGDKRGRQSAAILVVRDGAGYGGLDDVAVDLRVDDHAAPIDELVRLLSLHELYLTASTDEEKVVVDAALREELEAFATAGGHRDFAAWVGTENHEMRVAPDLAWIDRRVLAIVRGDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHM5</accession>
    <name>A0A0Q8VHM5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_13780</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897092.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53410">
        <property type="protein sequence ID" value="KRC53410"/>
        <property type="gene ID" value="ASE19_13780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2069145at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360044" evidence="1">
        <location>
            <begin position="39"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="131" mass="13925" checksum="2773182F46DC3F34" modified="2016-01-20" version="1">MLQKVRSRTFVGRRITRPAAVLSAVVVALVLGTPPAFAANITVNNGNGTMTHIDDGDRFKVCDTRANGVGVTGTLGWTVPGVQTKIVYTEQDGGDAGCDYFQFDVTEGPLWFISICDTGASSGCATKFFEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHN3</accession>
    <name>A0A0Q8VHN3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glycosyl hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_05655</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894144.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54937">
        <property type="protein sequence ID" value="KRC54937"/>
        <property type="gene ID" value="ASE19_05655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1293876at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC54937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="359" mass="39184" checksum="E300402CD2BABBDD" modified="2016-01-20" version="1">MTTIVMVGTRKGLWVGRSDDRADWEFTGPHHDMEEVYSCLVDTRGASPRLFAGASSSWLGPQLRWSDDLGATWQETPNGAIRFPEGAGATVERIWQVVPGSEPGVLHAGTEPGAVFTSRDGGSSFALEEGLWNHPHRTEWGAGFGGQAFHTVLPHPTDPASMTVAISTGGVYRTTDGGASWEPRNQGIRADFLPEDQRYPEFGQCVHKVTRHPSRPERLYAQNHGGVYRSDDEGGSWTSIGDDLPSDFGFPIVVHPHRPDTIWVFPLGGGDRRYPPDAKPRVWRSDDAGESWTPYGDGLPDAFYVGVMRDALCVDSQDPAGLYFGARNGSVWASADDGETWRQIAADLPDVMSVKAGTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHN9</accession>
    <name>A0A0Q8VHN9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_02720</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892770.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57034">
        <property type="protein sequence ID" value="KRC57034"/>
        <property type="gene ID" value="ASE19_02720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2014538at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC57034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="68" mass="7267" checksum="2405E75349FAF1F7" modified="2016-01-20" version="1">MTTRIDCDTCVVRGLACHDCVVTVLLGPPPELMIDDDELRALDVLAEGGLVPPLRLVRPVTAPEVESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHQ5</accession>
    <name>A0A0Q8VHQ5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Imidazole glycerol phosphate synthase subunit HisH</fullName>
            <ecNumber evidence="8">4.3.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">IGP synthase glutaminase subunit</fullName>
            <ecNumber evidence="8">3.5.1.2</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">IGP synthase subunit HisH</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">ImGP synthase subunit HisH</fullName>
            <shortName evidence="8">IGPS subunit HisH</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">hisH</name>
        <name evidence="11" type="ORF">ASE19_02255</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + L-glutamine = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate + H(+) + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24793"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58278"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="ChEBI" id="CHEBI:58525"/>
            <dbReference type="EC" id="4.3.2.10"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>H2O + L-glutamine = L-glutamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15889"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="EC" id="3.5.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 8">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 5/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Heterodimer of HisH and HisF.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.10" evidence="8"/>
    <dbReference type="EC" id="3.5.1.2" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892689.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56671">
        <property type="protein sequence ID" value="KRC56671"/>
        <property type="gene ID" value="ASE19_02255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1726024at2"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000107">
        <property type="term" value="F:imidazoleglycerol-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01748">
        <property type="entry name" value="GATase1_IGP_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00278">
        <property type="entry name" value="HisH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010139">
        <property type="entry name" value="Imidazole-glycPsynth_HisH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42701">
        <property type="entry name" value="PTHR42701"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000495">
        <property type="entry name" value="Amidotransf_hisH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01855">
        <property type="entry name" value="IMP_synth_hisH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="6 8" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="5 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GATase" evidence="10">
        <location>
            <begin position="10"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="8 9">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <feature type="active site" evidence="8 9">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <feature type="active site" evidence="8 9">
        <location>
            <position position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000495-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC56671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="216" mass="23350" checksum="B6A333D7BD2B5185" modified="2016-01-20" version="1">MTSAQPSVVVLDYGSGNLRSAVRAVERAGASVTLTGDLDAAMEADGLLVPGVGAYEACMRGLRAIRGERIIARRLAGGRPVLGICVGMQILFERGIEHGVETEGCNEWPGVVERLQAPIVPHMGWNTVSVPEDTRLFAGIEDERFYFVHSYGVRDWTLVTNDRTPASHQPLVTWAEHGGDRFVAAVENGPLCATQFHPEKSGDAGAQLLRNWVTSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-02-10" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHR7</accession>
    <name>A0A0Q8VHR7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893094.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57061">
        <property type="protein sequence ID" value="KRC57061"/>
        <property type="gene ID" value="ASE19_03870"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1819840at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.310.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005180">
        <property type="entry name" value="DUF302"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035923">
        <property type="entry name" value="TT1751-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016796">
        <property type="entry name" value="UCP021774"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03625">
        <property type="entry name" value="DUF302"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF021774">
        <property type="entry name" value="UCP021774"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103247">
        <property type="entry name" value="SSF103247"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF302" evidence="1">
        <location>
            <begin position="36"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="142" mass="14544" checksum="76273695D07088C1" modified="2016-01-20" version="1">MTDFTLSATLASSYDDTVTRVRALLGDAGFGALTEIDVRATLKAKLDVDVPAQLILGACRPQLAHRALQVEPRVAVLMPCNVVVADLGEGGTRVDVMDPALLASLTPDPELAAVAADGRARLTGMMEALMAGPTGATDAAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHU0</accession>
    <name>A0A0Q8VHU0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Transcriptional regulator WhiB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">whiB</name>
        <name evidence="13" type="ORF">ASE19_03465</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Acts as a transcriptional regulator. Probably redox-responsive. The apo- but not holo-form probably binds DNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="11">Binds 1 [4Fe-4S] cluster per subunit. Following nitrosylation of the [4Fe-4S] cluster binds 1 [4Fe-8(NO)] cluster per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="11">The Fe-S cluster can be nitrosylated by nitric oxide (NO).</text>
    </comment>
    <comment type="PTM">
        <text evidence="11">Upon Fe-S cluster removal intramolecular disulfide bonds are formed.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the WhiB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_028655649.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56875">
        <property type="protein sequence ID" value="KRC56875"/>
        <property type="gene ID" value="ASE19_03465"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1944871at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035731">
        <property type="term" value="F:dinitrosyl-iron complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01479">
        <property type="entry name" value="WhiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034768">
        <property type="entry name" value="4FE4S_WBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003482">
        <property type="entry name" value="Whib"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38839">
        <property type="entry name" value="PTHR38839"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02467">
        <property type="entry name" value="Whib"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51674">
        <property type="entry name" value="4FE4S_WBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 11" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 11" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8 11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 11" id="KW-0408">Iron</keyword>
    <keyword evidence="6 11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 11" id="KW-0804">Transcription</keyword>
    <keyword evidence="7 11" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="4Fe-4S Wbl-type" evidence="12">
        <location>
            <begin position="8"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51674"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC56875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="84" mass="9628" checksum="949724C35E39096C" modified="2016-01-20" version="1">MDWRHRSACLDEDPELFFPIGNTGPAILQIEEAKAVCRRCDVREQCLAWALEAGQDHGVWGGLSEDERRALKRRNARARVRQPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHX5</accession>
    <name>A0A0Q8VHX5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ArsR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07785</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895399.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53968">
        <property type="protein sequence ID" value="KRC53968"/>
        <property type="gene ID" value="ASE19_07785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1800563at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="8"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="190" mass="21602" checksum="AFA9BC83BEA4EDB4" modified="2016-01-20" version="1">MVMYDDPRILRAIAHPTRNRVLHELSAAGSLRAADIARRIDVPANQASFHLRQLAKYGLVEEDPDAGRDRRDRVWRLVDPDGIRFRTADMLAQPGGRAAYSVFRRNAVEWGQHLVARAFADPDEHDKEKRSISEWSVLLTPDEAEELMDELSAVVERYRDAGREAGPDAGRETWSVFNLIQPYPDLPESD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHZ7</accession>
    <name>A0A0Q8VHZ7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Polyribonucleotide nucleotidyltransferase</fullName>
            <ecNumber evidence="7">2.7.7.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Polynucleotide phosphorylase</fullName>
            <shortName evidence="7">PNPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pnp</name>
        <name evidence="9" type="ORF">ASE19_02905</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>phosphate + RNA(n+1) = a ribonucleoside 5'-diphosphate + RNA(n)</text>
            <dbReference type="Rhea" id="RHEA:22096"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the polyribonucleotide nucleotidyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.8" evidence="7"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892801.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56783">
        <property type="protein sequence ID" value="KRC56783"/>
        <property type="gene ID" value="ASE19_02905"/>
    </dbReference>
    <dbReference type="OrthoDB" id="122725at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004654">
        <property type="term" value="F:polyribonucleotide nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006402">
        <property type="term" value="P:mRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.70">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01595">
        <property type="entry name" value="PNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001247">
        <property type="entry name" value="ExoRNase_PH_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015847">
        <property type="entry name" value="ExoRNase_PH_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036345">
        <property type="entry name" value="ExoRNase_PH_dom2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014069">
        <property type="entry name" value="GPSI/PNP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004088">
        <property type="entry name" value="KH_dom_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012162">
        <property type="entry name" value="PNPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027408">
        <property type="entry name" value="PNPase/RNase_PH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015848">
        <property type="entry name" value="PNPase_PH_RNA-bd_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036456">
        <property type="entry name" value="PNPase_PH_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11252">
        <property type="entry name" value="PTHR11252"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00013">
        <property type="entry name" value="KH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03726">
        <property type="entry name" value="PNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01138">
        <property type="entry name" value="RNase_PH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03725">
        <property type="entry name" value="RNase_PH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005499">
        <property type="entry name" value="PNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46915">
        <property type="entry name" value="SSF46915"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="SSF54791"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55666">
        <property type="entry name" value="SSF55666"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03591">
        <property type="entry name" value="polynuc_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02696">
        <property type="entry name" value="pppGpp_PNP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="S1 motif" evidence="8">
        <location>
            <begin position="652"/>
            <end position="724"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="515"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="521"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01595"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="742" mass="79348" checksum="69C9ACD4BA2A8230" modified="2016-01-20" version="1">MTEPVISEVETVLDNGKFGTRTVKFETGVLARQAAGSVSAYLDGDTMLLSATTAGKHPKDHFDFFPLTIDVEERMYAAGRIPGSFFRSEGRPGEDAILACRLIDRPLRPTFKKGLRNEVQVVITVMALNPDTPYDVLAINAASLSTQLSGLPFSGPVGATRVALIEGQWVAFPTHSQLEKAVFDMVVAGRVTETGDVAIMMVEAEATEDVIELVRGGAQAPTEEVVAAGLDASKPFIKQLVEAQVELANVAAKPVQEFPVFLDYEDDAYAAVEAAVKSDLAAAMTIGDKQEREARTDELKAEVLDKLAGDFEGREKELGAAFRSVNKQLVRERILRDKVRIDGRGLADIRPLHAEVDVIPRVHGSALFERGETQILGVTTLDMLKMEQQIDTLSPENHRRYMHKYIFPPFSTGETGRVGSPKRREVGHGALARRALLPVLPSREEFPYAIRQLSEAMGSNGSTSMGSVCASTLSLLQAGVPLKASVAGIAMGLISGEIDGKLEYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPAEVLASALTQARDARLAILEVMAEAIDAPEEMSIHAPRIITVKVPVDKIGEVIGPKGKVINQIQDDTGASVSIEDDGTVYIGATNGEAAEAARAAINAIANPTMPEVGERYLGTVVKTTNFGAFIALMPGKDGLLHISKLRGLAGGKRVENVEDVVAVGQKLQVEIAEIDDRGKLSLIPVVDDAEGSADDDGAESEDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIA4</accession>
    <name>A0A0Q8VIA4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08440</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895513.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54081">
        <property type="protein sequence ID" value="KRC54081"/>
        <property type="gene ID" value="ASE19_08440"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1746865at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="162"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="219"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="243"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="315"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="341"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="370"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="402"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="434"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="464" mass="47202" checksum="81D2ECC44C3F9CDE" modified="2016-01-20" version="1">MSGPTSRSPAAGAVTAVTVHGPRGVLDLTVPTAATLLDVARVYAAETALPAPLPFVSRTGEALPMTTEVGAAGLVPGSVLVAIDPTARQSLPRRRSMAGDAAGPVADAVSATWLAVAVGVAVVAGWSATRLAEDERWPAVAVLLVAAFVGCLPFGALAPQRVVAAPAFAGAAVFAVVWDPLPERLPMVFGAAALAAAVAAAVGRALADPDGSAEQALRTWLFVGAAWFAIAGVAALTGASPQTVWAVLFLLAVLGARFVPEVAVDVPDQFLLDLERLAVTAWSARERPSGRRGRIVVPEQAVNVVAARGARTVRAAAVAILVVVLVAAPLLLWTADLPLDRTGARCLVGFGGASLLLAARSYRHAAARRLLRLAGVVALGLVALVLLGLGPGGDADSGRSGIIASLAIGTAAVLVLVAVLVGRGWRSAWWSRRAEVAEAVCGSFAIGALVVAVGFFRHLWELTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIH0</accession>
    <name>A0A0Q8VIH0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08985</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895605.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54173">
        <property type="protein sequence ID" value="KRC54173"/>
        <property type="gene ID" value="ASE19_08985"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="122" mass="12257" checksum="7D5AD5CDE97CC5BE" modified="2016-01-20" version="1">MAPLVVGGASRGFSVLLIGGVVQPWVGQLLPALGYVWLLLVALAAFAWAARPRAVSGAQPPALRLDRAVVGTAAALGSYALVLPLVLSVADAVPWTQLLLTSLTALTVGALVGGLAPAPRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VIZ1</accession>
    <name>A0A0Q8VIZ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23785</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893989.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57355">
        <property type="protein sequence ID" value="KRC57355"/>
        <property type="gene ID" value="ASE19_23785"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2093632at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004658">
        <property type="term" value="F:propionyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032716">
        <property type="entry name" value="ACC_epsilon"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13822">
        <property type="entry name" value="ACC_epsilon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="69" mass="7021" checksum="46D582575CFB1DA0" modified="2016-01-20" version="1">MSAPTLTGGNPTAEELAAVVAVLSALGQGAPAPEPVRSEWASPARGVRRTADSLTLRGRGAWRASGLPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJI5</accession>
    <name>A0A0Q8VJI5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07960</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54002">
        <property type="protein sequence ID" value="KRC54002"/>
        <property type="gene ID" value="ASE19_07960"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="2"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="357" mass="40046" checksum="7070F6D037D61150" modified="2016-01-20" version="1">MVVPLHNQAPYVVRSLDSVLAQPRVDLDVVVVDDGSTDGSGDLVATYAARHPEVTLVRQENAGVSVARNVGLERCTGDLVTFVDPDDFLPAGAWAPLLRSLDRTGSDFAVGMMERVDEQGVRHRPPLLARNHAEQRLGVRIDDAPLLLADVFPCNKVFRHDFWRTAGLSFPVGIHNYEDQVYSADAFLAARSFDVLTEVVYDWYVRGDLSSSTNRRGRLDNLADRLRTKYLALDRVTAYGNPVLVDTMYRRILPIDMWEHFRAAVAPGTQEPDRYWAALREGVLRLWNDATVPFELVDLPPGQRLMGWLVAQDRRDDLARLVAEIDGPGIEQRDGAYLHPWRDEPGCPEALSRVRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJV6</accession>
    <name>A0A0Q8VJV6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_13720</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897103.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53399">
        <property type="protein sequence ID" value="KRC53399"/>
        <property type="gene ID" value="ASE19_13720"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1318935at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="196" mass="21496" checksum="7E203910380F0064" modified="2016-01-20" version="1">MFIQMIQASCTRQDEAHGLIDEWRRDLSPGATGWLGGTYGFTDDDRLMAVVRFASREDAAASSERPEQGAWAERFAAVMDGPMEYHDCDDVTLLMGGGSDEAGFVQIIRGRVDDPSRLKAMMADSDTLHAMRPDILGATLAIEPDGSFVETVAFTTEAAAREGEKVEPPADVRAELEHAMQGATFHDLHHPWFHSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK75</accession>
    <name>A0A0Q8VK75_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">GTPase Era</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">era</name>
        <name evidence="12" type="ORF">ASE19_23490</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 8 9">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57771">
        <property type="protein sequence ID" value="KRC57771"/>
        <property type="gene ID" value="ASE19_23490"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070181">
        <property type="term" value="F:small ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04163">
        <property type="entry name" value="Era"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00367">
        <property type="entry name" value="GTPase_Era"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030388">
        <property type="entry name" value="G_ERA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005662">
        <property type="entry name" value="GTP-bd_Era"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004044">
        <property type="entry name" value="KH_dom_type_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42698">
        <property type="entry name" value="PTHR42698"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07650">
        <property type="entry name" value="KH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00436">
        <property type="entry name" value="era"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51713">
        <property type="entry name" value="G_ERA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50823">
        <property type="entry name" value="KH_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6 8" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="4 6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Era-type G" evidence="11">
        <location>
            <begin position="12"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="KH type-2" evidence="10">
        <location>
            <begin position="216"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="region of interest" description="G1" evidence="8">
        <location>
            <begin position="20"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="G2" evidence="8">
        <location>
            <begin position="46"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="G3" evidence="8">
        <location>
            <begin position="67"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="G4" evidence="8">
        <location>
            <begin position="130"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="region of interest" description="G5" evidence="8">
        <location>
            <begin position="164"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="20"/>
            <end position="27"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="67"/>
            <end position="71"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="130"/>
            <end position="133"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC57771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="312" mass="34106" checksum="2C05A7372B18ABF1" modified="2016-01-20" version="1">MFDLGDVPEGYRSGFACFVGRPNVGKSTLTNAIVGQKIVITSDKPQTTRTVVRGIVHRPDGQLVLVDTPGLHRPRTLLGERLNDLVKTTWAEVDVVAVCFPADEKIGPGDKFLVTELAKVRRTVKIAIATKTDLATPERIGEHLLDIAELGRETGTEWAEIVPVSSVGGDQIDLLAQLLVGLMPEGPPLYPDGDLTDAPEEILAAELIREAALDGVRDELPHSIAVVVEEMGLREGRPEDKPLLDIHANLYVERDSQKGIVIGKKGARLREVGTAARLQIEALLGTPVYLDLHVKIAKDWQRDPRQLRKLGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMC4</accession>
    <name>A0A0Q8VMC4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_02680</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892763.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56745">
        <property type="protein sequence ID" value="KRC56745"/>
        <property type="gene ID" value="ASE19_02680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1002350at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.81.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018076">
        <property type="entry name" value="T2SS_GspF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042094">
        <property type="entry name" value="T2SS_GspF_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00482">
        <property type="entry name" value="T2SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13519">
        <property type="entry name" value="VWA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360172" description="VWFA domain-containing protein" evidence="7">
        <location>
            <begin position="27"/>
            <end position="638"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="318"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="412"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="435"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="577"/>
            <end position="598"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="610"/>
            <end position="630"/>
        </location>
    </feature>
    <feature type="domain" description="VWFA" evidence="8">
        <location>
            <begin position="83"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC56745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="638" mass="66264" checksum="FA4D296155F7F82B" modified="2016-01-20" version="1">MAARRPLVVLAGFLAAFLLPATAAVAEDGTIAHVESTGEGLRVLVNVPQGAEVDLSGVEATLDGEDLTATAVAAGTGTEVKRTTVLAIDTSQSMAKAGRFAAAKAAATTYLATVPADVEVGIVTFDNDVQVALAPTTDRAAARTVVDGLGLARDTLLYDGVMAAVDAAGTEGQRTVLVLSDGADTGGSASLSDVADKITSTNTLVDVVSLGQSGSSLAPLRTMTEAGKGRVIESSGTALAEAFRAEADVLASQVLVTAPLPSGFDASQATVEVVLPTADEPVIARALAPIQSASGDTGLPSSPKVEIASPGGWNPPEWVFYAGIGVLAVGLIGAAMLLVPGRPAPMSIAERVEAYSTQVTRPSEREDKSASEPMLDQAKAAAAGLLERNQGLNERLSQRLSAAGSGFKPSEWLLVHVATVFVAGLAGFLISGSLIAGVVAMVLGAFLPPIYLRFRASRRRRAFDDALPDVLQLISGALSAGLSLAQAVDTVVREGPEPIASEFKRVLVEARIGVPIEDAFEGVAARFESKDFAWSVMAIRIQRQVGGNLAELLTTVAATMRERAYLRRQVRTLSAEGRFSAIILCGMPPTFALFMFFGNREFIQPLFDDARGWVLIGVASAMMSVGSFAMSRLVKVEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VMJ1</accession>
    <name>A0A0Q8VMJ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_05525</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894167.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54914">
        <property type="protein sequence ID" value="KRC54914"/>
        <property type="gene ID" value="ASE19_05525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="895310at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011703">
        <property type="entry name" value="ATPase_AAA-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07726">
        <property type="entry name" value="AAA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_3" evidence="1">
        <location>
            <begin position="41"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_lid_2" evidence="2">
        <location>
            <begin position="235"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="320" mass="34685" checksum="520FE26FC9DBFC84" modified="2016-01-20" version="1">MTSPADAAELAQRVLDEVETAVVGKRPSLTLVLSAIVAGGHVLLEDFPGLGKTLAARSFAQALGLDFKRAQFTPDLLPSDLTGSFLYDQREAAFTFRPGPLFTGLLLADEINRTPPKTQAALLEAMQERQVTVEGETFPLAAPFHVLATANPVEYEGTYPLPEAQLDRFLLRVELGYPDADEEWEVLRRRMARGREEVTVRQVVDADGLLAIQQAVESVSVDPDVGRYCVALAAATRSHHHTLVGSSPRGGLALLLVARAYAVVAGRDFVTPEDVKAVAVPALAHRITIRPELWMSDVTGRSVVESVLGHVPAPTARERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VN05</accession>
    <name>A0A0Q8VN05_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">dUTPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_22770</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000002">
        <property type="protein sequence ID" value="KRC58890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_036542629.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC58890">
        <property type="protein sequence ID" value="KRC58890"/>
        <property type="gene ID" value="ASE19_22770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1959396at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025242">
        <property type="entry name" value="DUF4193"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13834">
        <property type="entry name" value="DUF4193"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC58890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="96" mass="10937" checksum="D9E5BCF04AE18725" modified="2016-01-20" version="1">MATDYDAPRKNEDEQSEESIEELKARRHDKNSGKVDEDETEAAESFELPGADLSHEELAVEVKPKQDDEFTCMSCFLVHHRSQLADSKKMICFDCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPE7</accession>
    <name>A0A0Q8VPE7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">CbiA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04680</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894307.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54775">
        <property type="protein sequence ID" value="KRC54775"/>
        <property type="gene ID" value="ASE19_04680"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1054966at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002586">
        <property type="entry name" value="CobQ/CobB/MinD/ParA_Nub-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01656">
        <property type="entry name" value="CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiA" evidence="2">
        <location>
            <begin position="161"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="126"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="417" mass="43061" checksum="146ABEB826F52D13" modified="2016-01-20" version="1">MSNPPTVVLLVSTGAAWEGRALSALQSHPGTVLLKRCVDVADLLAAASTGQADVAVLAVELAGLDRTVVDELARHDVRVVGVSPDSGPAQPRAARAGLVTVIDEARIDDLARLVVALPADSAVPTAVPSAVPSAPSPTGSPSEEVLAEPPGPAGLTPGRVIAVWGPGGAPGRTTLAAGIAAELARRGLSTLLVDADPYGGAVAQQLGILDEVSGLLAAARLVAAGTVEQRFATVQRRISDRLSVITGLPRPDRWTEVRPGTLTALVEHARQHGQVVVDTGFSVEPDVATDLGRPARNDLTREALEAADEVVVVGGADPVGLARLARAVTDVHELLPDPPRVVVNRMRPTLGWREADVVAMLGGFGARDVHFLPDDQPAVDRALVAGRLVVESGESPLTRAVGRLVDAMARPPTGVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VPV0</accession>
    <name>A0A0Q8VPV0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Alanine racemase</fullName>
            <ecNumber evidence="3">5.1.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_00350</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>L-alanine = D-alanine</text>
            <dbReference type="Rhea" id="RHEA:20249"/>
            <dbReference type="ChEBI" id="CHEBI:57416"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="EC" id="5.1.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 3 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the alanine racemase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.1" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896815.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59525">
        <property type="protein sequence ID" value="KRC59525"/>
        <property type="gene ID" value="ASE19_00350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="859043at2"/>
    <dbReference type="UniPathway" id="UPA00042">
        <property type="reaction ID" value="UER00497"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008784">
        <property type="term" value="F:alanine racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030632">
        <property type="term" value="P:D-alanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01201">
        <property type="entry name" value="Ala_racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000821">
        <property type="entry name" value="Ala_racemase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009006">
        <property type="entry name" value="Ala_racemase/Decarboxylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011079">
        <property type="entry name" value="Ala_racemase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020622">
        <property type="entry name" value="Ala_racemase_pyridoxalP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00842">
        <property type="entry name" value="Ala_racemase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00992">
        <property type="entry name" value="ALARACEMASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01005">
        <property type="entry name" value="Ala_racemase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50621">
        <property type="entry name" value="SSF50621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00492">
        <property type="entry name" value="alr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00395">
        <property type="entry name" value="ALANINE_RACEMASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ala_racemase_C" evidence="6">
        <location>
            <begin position="247"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for D-alanine" evidence="3">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for L-alanine" evidence="3">
        <location>
            <position position="268"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="322"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3 4">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR600821-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR600821-52"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC59525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="390" mass="41049" checksum="921B66628DD12A10" modified="2016-01-20" version="1">MSRPPLGPAEVVVDLAAIRANARLLRETAGVPLIAVVKADGYGHGMVESARAARQGGAEWLATATIEEALALRRAGVEGPLLCWITTPASDYRAAADQDIDVSAYSVAELDLMSHALSGRRTPARIQLKVDTGLSRGGAPRAAWEAVFARARAGEESGTWRVTGIWSHFACADEPEHPANDQQEQAFRAAVALAEEAGLRPELRHLANSAAAILRPSSRFDAVRCGIAVYGLDPAPGEATDIGLVPAMTVRAPLVMVKELAAGDAISYGHRWTAPGPMTVGLVPVGYAEGIPRHAFRAEAPEAAAEVGIDGKRCRIRGTVCMDQVVVDLGDDRPVVGGDVIVFGPPSAGGPTADDWAEACGTINYEIVTRIGGRMSRRYVDSAPLAEAEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQ14</accession>
    <name>A0A0Q8VQ14_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">Citrate synthase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_00400</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>acetyl-CoA + H2O + oxaloacetate = citrate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16845"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:16947"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.3.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Carbohydrate metabolism; tricarboxylic acid cycle; isocitrate from oxaloacetate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 5 8">Belongs to the citrate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896806.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59534">
        <property type="protein sequence ID" value="KRC59534"/>
        <property type="gene ID" value="ASE19_00400"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1412360at2"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00717"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004108">
        <property type="term" value="F:citrate (Si)-synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd06114">
        <property type="entry name" value="EcCS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016142">
        <property type="entry name" value="Citrate_synth-like_lrg_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016143">
        <property type="entry name" value="Citrate_synth-like_sm_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002020">
        <property type="entry name" value="Citrate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019810">
        <property type="entry name" value="Citrate_synthase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024176">
        <property type="entry name" value="Citrate_synthase_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036969">
        <property type="entry name" value="Citrate_synthase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010953">
        <property type="entry name" value="Citrate_synthase_typ-I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11739">
        <property type="entry name" value="PTHR11739"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00285">
        <property type="entry name" value="Citrate_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001369">
        <property type="entry name" value="Citrate_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00143">
        <property type="entry name" value="CITRTSNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48256">
        <property type="entry name" value="SSF48256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01798">
        <property type="entry name" value="cit_synth_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00480">
        <property type="entry name" value="CITRATE_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="active site" evidence="6">
        <location>
            <position position="306"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR001369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR001369-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC59534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="429" mass="48182" checksum="4039A48342C76701" modified="2016-01-20" version="1">MTDSLTVRDNRTGAEYEIPITDGTIKAADLGQIKLNDDEPGLATYDPGFVNTASCRSAITYIDGDKGILEYRGYPIEQLAEKSNFLEVAYLLIHGDLPSKEQYEAWVHEITFHTFVHENVKGFMQGFRYDAHPMGMLMASVGALSTFYPESSKIADPDNRHIQIVRMIAKMPTLGAWAFRHAQGKPYVYPDNELSYAENFLSMLFKMSETKYSGDPRIVKALDTLFILHADHEQNCSTNAVRSVGSSQVDPYSAVAAGIGALFGPLHGGANEAVLKMLRRIGTVENIPAFIEGVKNGEERLMGFGHRVYKNFDPRAKIIKKACDDVFEVTGVNPLLAVAKELERIALEDEYFVKRKLYPNVDFYSGLIYEALEFPPEMFTVLFAIGRAPGWLAQWLELVQDKEQKIARPKQIYTGPRTLDFVPAEERWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQR7</accession>
    <name>A0A0Q8VQR7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01580</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896601.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59738">
        <property type="protein sequence ID" value="KRC59738"/>
        <property type="gene ID" value="ASE19_01580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1641547at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="166"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="199"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="231" mass="25632" checksum="9E562128A1B1572A" modified="2016-01-20" version="1">MRPSLERAAAWCGPAFLVLYVVAFIGIARFVPPPSPAMSAGEVAELFDDHRFGIRVGMVLSLVFSTLLFPFFAVISVHIARIERGRLLALVQFGGATLLVVYFQLCSMIWITATFREELGADTVRMLSDFGWLCFVMVFPAYVFQLSCVAIASFMDRSEHPVWPRWAGFLNLWIALSGAGGGLAVFFKTGPFAWNGAVGFYLPVGAFVTWLFVMTHLMLRHAGRHSDPREA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR34</accession>
    <name>A0A0Q8VR34_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_03655</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56909">
        <property type="protein sequence ID" value="KRC56909"/>
        <property type="gene ID" value="ASE19_03655"/>
    </dbReference>
    <dbReference type="OrthoDB" id="325071at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140658">
        <property type="term" value="F:ATP-dependent chromatin remodeler activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="243"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="3">
        <location>
            <begin position="545"/>
            <end position="693"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="717" mass="78665" checksum="3E22BC88BF0C96EF" modified="2016-01-20" version="1">MARGGQRGATQQRRNNPQAARTRRNEEGIIPQLARAVREVEAAVARRSAMPEVRAKFQVVALLAREERTRVKNDPDLSDSRRGEELKRLDGIATILAQTAARDSTLFTLLDENAEMSESAKAMRRELLRKAGVDAPEPEPEPVVVDPETAALLEKRVIPQSVQARQLANPFLAPDFEHARAKVRPRRLAGWELLEPLFRSFERAAPDAPACMPLPDADQLTTLTGLHGPVGRELMHHQAQLIGSAALGHRTYLLADEPGLGKTAQALLAAEAAGAFPLLAVVPNVVKTNWAREVEIWTPHRKATVLHGDGADADGFADVFIVNYEILDRHVGWLGNHGFRGMIVDEAHYIKNKTSQRSQNVLEISNRIRSRVARPLMMALTGTPLINDIEDFRAIWQFLGWIDDVVPQGDLMEALEETGLTPADPAFYPAARRAVVDEGIVRRRKIDVAADIPARRVADMPVELEGEAGRSIRKAEQELARRMVERYDAALSTRRAGHVVEGIDHHLVRQVAGWEREDNSSKTGENVFMMMRRIGQAKAGLAADYTAQLARNVGKVVFFAKHIDVMDVAEKTFAERGIKYTSIRGDQSSTARQKAIDAFVNDPEVQIAVCSLTAAGVGLNLQVASNLVLAELSWTDAEQTQAIDRVHRIGQAEPVTAWRVIATQTLDTRIAELIDKKAGLAARALDGAGEDVEGGAIDLQTEALVALLTAALEARGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR43</accession>
    <name>A0A0Q8VR43_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Choline dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_01850</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GMC oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896876.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59828">
        <property type="protein sequence ID" value="KRC59828"/>
        <property type="gene ID" value="ASE19_01850"/>
    </dbReference>
    <dbReference type="OrthoDB" id="543793at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012132">
        <property type="entry name" value="GMC_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11552">
        <property type="entry name" value="PTHR11552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000137">
        <property type="entry name" value="Alcohol_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="4">
        <location>
            <begin position="12"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="domain" description="GMC_oxred_C" evidence="5">
        <location>
            <begin position="404"/>
            <end position="538"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="105"/>
            <end position="108"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000137-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF05199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC59828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="546" mass="58488" checksum="76252AD91B6BB0BD" modified="2016-01-20" version="1">MAKRPTYSNEADYIVVGSGSSGAAVAARLAESGASVIMLEAGKSDAKGMHGYMTRKPGMCAPMHFDERLEKGFDWGYKSTPQTSAGGREMLVTRGKVMGGSSSVNGMVYVRGNRANFDSWAAEGNVGWDADSVNAAYKRSEDFEDGENAYRGAGGPIKVSRSRIIQEGTHQFIQATSEALGVKINDDYNGAEQEGISIMQENVRDGVRYSSTRGYVHDLAPRTLEVQTEVLATKVVLEGTRAVGVEVIDQGRGGGRRTIRAGKEVILSGGFVNSPQLLMLSGIGPAAHLASLGIDCVADLPVGDNLHDHMFHPLSFQLSTINLRSTPAYFLKGMVRNMFGQDTFLNHSIFESVGFVRSSLATDVPDIQLHAIPWSYPNPGAGDHGKQKPDPRPSLGVFSTLIYPKSRGTIRLASTDPTAAPLIDYGYLTEADDLKVLAEGTEMARAIMASSVFGSSVKEEIYPGPAVTKDDPEEIRRRAVSVMHAVGTCRMGVDERAVVGPDLKVRGIEGLRVADASIMPSITGGNTNAPCYMIGERASDFILGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VS93</accession>
    <name>A0A0Q8VS93_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03770</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892947.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56930">
        <property type="protein sequence ID" value="KRC56930"/>
        <property type="gene ID" value="ASE19_03770"/>
    </dbReference>
    <dbReference type="OrthoDB" id="453021at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="470" mass="48956" checksum="5CD4D5D8E7845850" modified="2016-01-20" version="1">MTDAIVIGSGPNGLSAALTLARAGVDVTVLEARDEIGGGTRTVQPFGEGILVDHCAAIHPMALQSPALAGLDAHGLSWAWPEIDAAHPLDDGPAALLHHSVEETAAGLGKDARRWKMLFGAPSRAYGKLAGDILGPVVHLPRHPLLLGRFGAPTVLPAALLARVFRTDQARALFLGTTAHAMRPLTEVVSSAIGMGILTAGHHDGWPVAVGGTQAITTAMAAALVDLGGKIETGVPVTSLSQLPRTDAVLLNLSPQAALALYDDQLPAGTRRSYRRHRYGPAAFKVDFAVQDGIPWRDPAVGRAGTVHLSGGAAEIIANERSVASGHLPDRPFVLLGQQYLADPTRSRGDVHPIYAYAHVPAGYTGDATEALIAQIERFAPGFRERIVGQFVTSPAAFAAGNANYVSGDILTGSKTPASLLLGPRPGRNPYRTGVRGVYLCSAAAPPGPGAHGMVGYRAAHQAIKDLRLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VSL9</accession>
    <name>A0A0Q8VSL9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SWIM-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_24025</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000004">
        <property type="protein sequence ID" value="KRC57392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894026.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57392">
        <property type="protein sequence ID" value="KRC57392"/>
        <property type="gene ID" value="ASE19_24025"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1906220at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04434">
        <property type="entry name" value="SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="SWIM-type" evidence="2">
        <location>
            <begin position="117"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC57392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="218" mass="23399" checksum="E136C2ECB36645CF" modified="2016-01-20" version="1">MRTTFARRTHPPRGVRTWWGKAWQRAVEEAAYSEAELRPGRAHARRGDVGGITVDGGQVVAAVRDGDDAWTVQVAIPELDEVTRKAFVEVVAAESGRIAELLAANLPHDLVEHAEELGVELLPYGGELAATCTCPHYLDPCAHAIGVLVQLGWLVDEDPLVLLAVRGLDRDALLAELHARATGTTTGPVVGDLVDDVELVVDAALRAQALIAVFENPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VV00</accession>
    <name>A0A0Q8VV00_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04055</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893000.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56983">
        <property type="protein sequence ID" value="KRC56983"/>
        <property type="gene ID" value="ASE19_04055"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1619418at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="196" mass="22318" checksum="903D431058468950" modified="2016-01-20" version="1">MARFDITRTNIAVERLLETTENPRHRYLLHAYNRHRYLEMAGRWKEIFAPEMTVEHPIYHFNVFGINTVLQGAEAVQAVYAEWSETAQCVFYTDDEVLAVGDNMIVSTATIYQQTPGAVLVAAGAPVDPAAHYLVANVEHMIWPYDDEGRLIGEDVWEIDESKRQVIPLDPSEVLTTQRAGELLEPLILPLPQRPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VV51</accession>
    <name>A0A0Q8VV51_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Arsenate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03150</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ArsC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893081.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57047">
        <property type="protein sequence ID" value="KRC57047"/>
        <property type="gene ID" value="ASE19_03150"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1650947at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006660">
        <property type="entry name" value="Arsenate_reductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30041">
        <property type="entry name" value="PTHR30041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03960">
        <property type="entry name" value="ArsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51353">
        <property type="entry name" value="ARSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="117" mass="12693" checksum="502CE4B979165049" modified="2016-01-20" version="1">MEIWLNPACSKCRTAESDLRAAGVEYTVRRYLDDPPTVAELEDVLGRLALEPWDIARTADAGKLGITLPAKAADQRSAWVQLLADHPRLIQRPIITATDGTTVVGRDPGSVARVMGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYG4</accession>
    <name>A0A0Q8VYG4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amino_oxidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01780</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896566.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59773">
        <property type="protein sequence ID" value="KRC59773"/>
        <property type="gene ID" value="ASE19_01780"/>
    </dbReference>
    <dbReference type="OrthoDB" id="453021at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="217"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="524" mass="55681" checksum="DD26C4DEBCA95B80" modified="2016-01-20" version="1">MAESFDFVVIGGGHNGLSAACTLGAAGASVLVVEQQPVLGGLSTSHAYLPEAPDHVLSLGAMDDMFMSCTSIVDDLRLRRHGFETITVPAPYGWIGPDGETLLLFADLDRTLAEVRRFSPYDARAYADLQPALSWIFRALVTVMSRHPAELPKRELGRHLLRLAPDRTTRRRLGQIMSSNLVELMAETFRSDAMRSLGTYWGSMIGPIDADGGGFYCVGLAAVHSRPGVQRPRGGMRSIVGALEGRARSLGVEVRSGCGVEQVLVDGGEVRGVRLTDGTVVDARRGVLAAVPPQTAYGPLLEPGVLDYSVTAKVAMLPASGNNSATFKVDLAVGGPVTFPVAQGQRDRLDGHDLRTVSLMTGTFADQIEQLRLIRQGRSLAAPPSYLAVLSGLDPTVAPPGQDVVYLASNVPAQPREDWPDIRDRYADGVLATARTHLSGLDAEIGRVVTSPADFGEQYATPNGSYFHVDMTPLRLAMNRPAPGLGGYRSPVAGYFHAGAGSHPGGGVSGWPGRLAARTALAER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYH3</accession>
    <name>A0A0Q8VYH3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00315</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896820.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59520">
        <property type="protein sequence ID" value="KRC59520"/>
        <property type="gene ID" value="ASE19_00315"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2188585at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="176"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="306"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="216"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="375"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="410" mass="41438" checksum="23836A2761892FCE" modified="2016-01-20" version="1">MAGEHIKKLETWVNGMNVEDVSDSQTAWRKITGALVVAQVALELAAPKIGEGFGDSDLGTGASEAFLAAAKRLETQRLPMGDASSALLQVESDMKTARTTINGAAKEPGEAPKEENYPGLPRLLNLPLALAEAQHTAEVNAYNQSDDDARKQIEQLNKSYGEAIVVFTKIHGDPYVPIDPDGTRQAPTPGTPGAPTVPTSKPKGTVRDPHVDIGRPVDPPVDPPIDKPWPPVRPPVDVWPPIDIGDPEWPDPDFPDPEPPTTTDPTGPGGTGGGVHPGVLGGGLLAGGLATPGAVNGIRGLLSRGGLSSGGAGAIGSSSRAGGPGSLGRSGGTGAGAPGSQAGRGGGRGGGSAGSQAGRGGRGGRSGGAGGAGGRGNRRKDDRDPSNEQDLYDDGKDWLDDEGTAPGVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VZ65</accession>
    <name>A0A0Q8VZ65_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_01090</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896691.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59650">
        <property type="protein sequence ID" value="KRC59650"/>
        <property type="gene ID" value="ASE19_01090"/>
    </dbReference>
    <dbReference type="OrthoDB" id="961884at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020459">
        <property type="entry name" value="AMP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00154">
        <property type="entry name" value="AMPBINDING"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="11"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="397"/>
            <end position="475"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC59650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="489" mass="51429" checksum="2CEB6EAC6CD45EDA" modified="2016-01-20" version="1">MSLDHLPWHRPSSYDDRPCVRDDRTELTYAQLAARVDAVAEQLAGLGVGHGDVVAVMLPNRVELLLTILAAWRLGAAATPINPTFTATEADHQIGDSGAVVVVTTDPAAVLGDAVVLGVEDLATSSAGTLPTPATAPEDLALLVYTSGSTGRPKGVMLDHGNVSAMIESMGEAIAIRPDDHCLLVLPLFHVNAICVSWLTPMSVGGQLSVLQRFHPVEFVQAIERLRPTYFSAVPTIYSHLVALPAEVQPDVSSVRFAVCGAAPAPPELFAAVEKRFGFPLVEGYGLSEGTCASTCNPVEGVRKPGTVGPALPGQLVAIMAPDGSVVPTGERGEVVIKGANVMRGYLNRPEATAETLGDGWLHTGDVGILDEDGYLRIVDRIKDMIIRGGENIYPKEIENVLHGDPSVLEAAVVGAPDPVYGEVVVAFVSSAPDSPDGAVDVDDLLARCRAELAKVKVPVAIHVLDALPKNPVGKIDKPALRAQLAKES</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8W1N1</accession>
    <name>A0A0Q8W1N1_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PPDK_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896718.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59623">
        <property type="protein sequence ID" value="KRC59623"/>
        <property type="gene ID" value="ASE19_00950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1740235at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002192">
        <property type="entry name" value="PPDK_AMP/ATP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01326">
        <property type="entry name" value="PPDK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPDK_N" evidence="1">
        <location>
            <begin position="58"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="271" mass="28108" checksum="FDA222EFE686C0E4" modified="2016-01-20" version="1">MPGGPALVRLADAVDEGEFGGKGAQLAAALRAGLPVPGGYALGWAAVETAVAGDADLGAELVGLAPGPWAVRSSAIGEDSAAASFAGAHLSVLGVAGATGLADAVRRVHASARDGSALSYREQHGIETPCRMAVVLQEMVAADVAGVLFTRHPVTGDRERVIEASWGLGEMVVSGQVTPDNYRVSCDGVPLDWSPGEKDVALRLLPDGRVEEHEVAADLVEARCLDDDQLRALHDLASACDEAYGSTDHDIEFAFAGSRLFLLQRRPITHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNF4</accession>
    <name>A0A0Q8UNF4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cell envelope biogenesis protein OmpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_21945</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896255.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46485">
        <property type="protein sequence ID" value="KRC46485"/>
        <property type="gene ID" value="ASE19_21945"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045713">
        <property type="entry name" value="DUF6069"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19545">
        <property type="entry name" value="DUF6069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="122"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC46485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="146" mass="14823" checksum="35903D2AF4D22933" modified="2016-01-20" version="1">MSSTTQIPTATTAPAADVPSVRPVVWRHGVAAAGVAAVATTTLAAIASAAGVSFADTTGESIPLFAFAQLTLVFSLIGVGIAAVLARRARRPRSTFVRTATVLTVLSYVPDLTFGFDAASAAVLIGLHTVAALVVVPVLARRLVRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UNN7</accession>
    <name>A0A0Q8UNN7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_19930</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896371.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46602">
        <property type="protein sequence ID" value="KRC46602"/>
        <property type="gene ID" value="ASE19_19930"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2034986at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="29"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="66"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="94"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="120" mass="13267" checksum="D4B6826B68E1AA31" modified="2016-01-20" version="1">MEGRPTADETDDGTERSRRPDWFHRGHPVFFPLAGFFTGMVSIIVVPGVYAAVIKGLAGYDRAEELFPFVLLLLVVPIAMLVPRRTRRFARYMLLGMVATIVVVGGVAAAVLFFLLKKDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UP28</accession>
    <name>A0A0Q8UP28_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_22500</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46575">
        <property type="protein sequence ID" value="KRC46575"/>
        <property type="gene ID" value="ASE19_22500"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="302"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="539"/>
            <end position="556"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="568"/>
            <end position="591"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="3">
        <location>
            <begin position="14"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="2">
        <location>
            <begin position="607"/>
            <end position="653"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="4">
        <location>
            <begin position="749"/>
            <end position="885"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="886" mass="94881" checksum="E866DA8C9CADF705" modified="2016-01-20" version="1">MAGSEVAMASVAAQALTAERLARALAQGDLVVHYQPCYDLRTGDMVAVEALARLRDPDSGELVPPSAFLDVAEASGLVVHLDEMVLTCAAEQVAAWRRIPAGRRLCLAVNLSPADLDDPTLPVRFREATEAAGLPMDAVIVELTETLLSQTGRGHEQVLAELAAMGANVTLDDFGTGNASFDYLRRFHVDGVKIDRSFVQYLGSGGRRDRMAESLVRFCLSLGVHVVAEGIERPRHVAALRRLGCPFGQGFLMSRPLPAPEVERLLVAGAVPEALGRLDDPVLLPAFATDPDAHRFSAFERLVPRVLAVLVASVLVLVAVLSAAGHHHSHENLTDAARTRLAAIDSLAAEGVDMRLGGLRDVVTTFSRSDTVGRALATRDPERMELALEALASSSRGIFNTSLYAADGTMLALAPEQPEPVVVGRSFAYREWYRPAGRSTSAYITQAYQLMTPDRTWAIAVAAAVRDDRGRVSGFVVATIALSGLQADMTAVFRRYGVRVSVVDRHDITLADSGGRVGRRSTDQRLLAGREASGHGDDSMLWAVSAVPAIGGWLLVEQDRDEAVGTAIGHADPLIIGILIGTGFVAVLLWAGNDRRRRALKTDLRTRNAWLTSILDATPTPVLVSDAEDQVLQANAEAAALLGVPSASLRGQTVSSWLTTRDQPTTGRDATPATVVTRDGEVRLVEVRVRELTGPQGEPMRLHALIDVTPHHEEHDRLRAQGRVDPLTGLANRIALQEALTAASAPGRSPHALVMLDLDGFKAVNDELGHAAGDSVLCVVADVLGSAVGADDTVARVGGDEFVLVVRLDEWGSHTRLADSLRQRVQAALDAHPFALDGRVGASIGSALIGVDGHDNDELLRLVDQRMYVAKRRRAGRNRRSEGLPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV13</accession>
    <name>A0A0Q8UV13_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Aspartate carbamoyltransferase</fullName>
            <ecNumber evidence="5">2.1.3.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Aspartate transcarbamylase</fullName>
            <shortName evidence="5">ATCase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">pyrB</name>
        <name evidence="9" type="ORF">ASE19_19295</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>carbamoyl phosphate + L-aspartate = H(+) + N-carbamoyl-L-aspartate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:20013"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:32814"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="EC" id="2.1.3.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 2/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.2" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893436.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49034">
        <property type="protein sequence ID" value="KRC49034"/>
        <property type="gene ID" value="ASE19_19295"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1844275at2"/>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016597">
        <property type="term" value="F:amino acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004070">
        <property type="term" value="F:aspartate carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1370">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00001">
        <property type="entry name" value="Asp_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006132">
        <property type="entry name" value="Asp/Orn_carbamoyltranf_P-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006130">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036901">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002082">
        <property type="entry name" value="Asp_carbamoyltransf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006131">
        <property type="entry name" value="Asp_carbamoyltransf_Asp/Orn-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11405:SF16">
        <property type="entry name" value="PTHR11405:SF16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00185">
        <property type="entry name" value="OTCace"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02729">
        <property type="entry name" value="OTCace_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00100">
        <property type="entry name" value="AOTCASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53671">
        <property type="entry name" value="SSF53671"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00670">
        <property type="entry name" value="asp_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00097">
        <property type="entry name" value="CARBAMOYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="OTCace_N" evidence="8">
        <location>
            <begin position="3"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="OTCace" evidence="7">
        <location>
            <begin position="152"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC49034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="316" mass="33807" checksum="627DB635DE583C27" modified="2016-01-20" version="1">MNRHLLSIDDLEVADIHRIFATAAEMHDVQKREVKKLPALRGRTVINLFFEDSTRTRSSFEIAGKWLSADVINLSAKGSSASKGESLRDTALTVTAMGIDGLVVRHSASGAAEQISRWVDVPVINAGDGTHEHPTQALLDGYALTRKLGTLEGKHVAIVGDVTHSRVFRSNVKSLVKLGASVTVVAPPTLMPSGVGDWSKAAGFATSYDLDAVLPDVDAVMMLRVQRERMSGGFFPTAREYTVGYGLTRNRLDLLKPGTPILHPGPMNRGLEISPDAADAADSLVLDQVSSGVAVRMSVLYHLLAGEPESMGGESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV35</accession>
    <name>A0A0Q8UV35_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_19470</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893469.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49067">
        <property type="protein sequence ID" value="KRC49067"/>
        <property type="gene ID" value="ASE19_19470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1914729at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014325">
        <property type="entry name" value="RNA_pol_sigma-E_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02983">
        <property type="entry name" value="SigE-fam_strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="24"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="111"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC49067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="176" mass="19815" checksum="A100D87B373E07C4" modified="2016-01-20" version="1">MELIEGGAAVLAPDRDDAAFDAFVAARLPHLLRLGRALTGDEQRGADLVQDALERALVRWRRLDEPEAFVRRAMVNRSISVWRKVRRERPLEALGTHTSSEVVHDRPADHELLAAVRALPPRQRAVVALRYYEDLTEAQTAEVLGCSVGTVKSQANRAMLALRRQLPTYTDREETR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV63</accession>
    <name>A0A0Q8UV63_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MPAB_Lcp_cat domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17815</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893828.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49099">
        <property type="protein sequence ID" value="KRC49099"/>
        <property type="gene ID" value="ASE19_17815"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1395053at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018713">
        <property type="entry name" value="MPAB/Lcp_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09995">
        <property type="entry name" value="MPAB_Lcp_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MPAB_Lcp_cat" evidence="1">
        <location>
            <begin position="12"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="30338" checksum="7E9E71BE7EF53875" modified="2016-01-20" version="1">MRDHVSGIGAHLAGPANVIMQLSWPGVGHGVMNSRVEDGSAMKHPYKRGRTTFTYLAVALLGDDADRTAFRKEVNRQHAQVYSRPGEKVEYRAMDPRLQTWVAACLYYGTADMIEKMHGPLPDEQADALYLHCARFGTTLQMPAEAWPADRAAFDRYWEDSLAEVDIDPDVAEYLMKLTTLQNFPAPVRLMAPFLVFVTTGFLPPLFRDAMGLSWSRRKQRRFDRLMRVVGAVERRLPRVLRAFPFNLWLADMRLRRRFRRPLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UV96</accession>
    <name>A0A0Q8UV96_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Alanine--tRNA ligase</fullName>
            <ecNumber evidence="10">6.1.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Alanyl-tRNA synthetase</fullName>
            <shortName evidence="10">AlaRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">alaS</name>
        <name evidence="12" type="ORF">ASE19_19195</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <reference evidence="12 13" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala)</text>
            <dbReference type="Rhea" id="RHEA:12540"/>
            <dbReference type="Rhea" id="RHEA-COMP:9657"/>
            <dbReference type="Rhea" id="RHEA-COMP:9923"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78497"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="10">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="10">Consists of three domains; the N-terminal catalytic domain, the editing domain and the C-terminal C-Ala domain. The editing domain removes incorrectly charged amino acids, while the C-Ala domain, along with tRNA(Ala), serves as a bridge to cooperatively bring together the editing and aminoacylation centers thus stimulating deacylation of misacylated tRNAs.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.7" evidence="10"/>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893861.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49130">
        <property type="protein sequence ID" value="KRC49130"/>
        <property type="gene ID" value="ASE19_19195"/>
    </dbReference>
    <dbReference type="OrthoDB" id="91428at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004813">
        <property type="term" value="F:alanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006419">
        <property type="term" value="P:alanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00036_B">
        <property type="entry name" value="Ala_tRNA_synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002318">
        <property type="entry name" value="Ala-tRNA-lgiase_IIc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018162">
        <property type="entry name" value="Ala-tRNA-ligase_IIc_anticod-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018165">
        <property type="entry name" value="Ala-tRNA-synth_IIc_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018164">
        <property type="entry name" value="Ala-tRNA-synth_IIc_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023033">
        <property type="entry name" value="Ala_tRNA_ligase_euk/bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003156">
        <property type="entry name" value="DHHA1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018163">
        <property type="entry name" value="Thr/Ala-tRNA-synth_IIc_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012947">
        <property type="entry name" value="tRNA_SAD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02272">
        <property type="entry name" value="DHHA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01411">
        <property type="entry name" value="tRNA-synt_2c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07973">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00980">
        <property type="entry name" value="TRNASYNTHALA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00863">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101353">
        <property type="entry name" value="SSF101353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55186">
        <property type="entry name" value="SSF55186"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00344">
        <property type="entry name" value="alaS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50860">
        <property type="entry name" value="AA_TRNA_LIGASE_II_ALA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 10 12" id="KW-0436">Ligase</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 10" id="KW-0820">tRNA-binding</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II_ALA" evidence="11">
        <location>
            <begin position="1"/>
            <end position="724"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="577"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="581"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="681"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="685"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KRC49130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="893" mass="96052" checksum="90107D5E98296566" modified="2016-01-20" version="1">MSSAEIRNRFLAHFEGRGHTVVPSASLLLDDPNLLFVNAGMVPFKPYFLGQETPPFSRATSVQKCVRTLDIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAVQYAWELITGDQASGGLGFDPEKVWVTVLPEDEEARDAWKRIAGLPDERIQPRGLKDNYWNMGVPGPGGPCSEIYIDRGAEYGPDGGPEADEDRFLEIWNLVFMQEELSAVRAKDDFDIAGPLPSKNIDTGMGLERVAYLLQGKQNMYEIDTVFPVIERAQELSGKKYGAAGSDGHVDDVRFRVVADHVRSSLMLIGDGVTPGNEGRGYVLRRLLRRAVRNMRLLGYQDPSLPELLPVSRDRMGESYPDLVTGWDRIAQVAYAEEEAFRKTLQAGTQIFDLAAGEVKDAGASTIAGEKAFALHDTYGFPIDLTLEMAAEAGLTVDEPGFRQLMTEQRERAKADARAKKGQHADTGVYRGILDANGPTEWLAYETLETESRPLALLREGKAVNVLANGEIGELVLDRTPFYAESGGQVADAGVIEYEGGSLEVLDVQRPVRGLVVHQVRVVDGELPADAALLHAKVDPQWRIGARQAHSGTHVIHAALREVLGPTALQSGSYNRPGYLRLDFGWLNALSPEQVHDIEQVANNALRADLPVGWQYMTLGEAKDWGALALFGETYDDTKVRVVEIGGPWSRELCGGTHVDHSSQIGTIVVTGEASVGSGNRRIEALTGVEGFSYLARERDVVGQLSTLLKTQPGDLVGRVGDLVERLKQTEKEIEKIRLAQLLSGGAALAAGATDVNGVRLVAQRLDGASGGDVRTLATDVRARLAGDAPAAVVLIGAADGKAAVVAALNDAAQARGLAAGELVRAAAPFLDGKGGGKADLAQGGGTDVSRIDEALAAVTAAVAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UVY2</accession>
    <name>A0A0Q8UVY2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_21825</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896233.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46464">
        <property type="protein sequence ID" value="KRC46464"/>
        <property type="gene ID" value="ASE19_21825"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1253502at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="64"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="98"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="162"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="188"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="223"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="262"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC46464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="288" mass="31527" checksum="D5C21459BE3E99D1" modified="2016-01-20" version="1">MTQLLEPPDQRTKLKPPKPEDKEITLRSSWDSWKASLATAGDITRFSAETIRELPTLRLYFTEILRQCGVLIIASGAIIWSMQFVIGTMCGTEASYTLKAIGAPLYTGVFTVYCGLREMCPYMFAYIVAAKVGCGLVAEIGSMRIAEEIDAMEVMGIRSRSYLVGTRLVAAWIAMPFLYSVGLAGMYIAEWLVCVVQYGTVSPGGYSLIFWMFQNPMDYGYSMAKAIIMGTVIVLVGCYYGFTAKGGPVGVGVNTAKSMMVNMVLIHIIGLLTTQLFWGMAPNAPIAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXN7</accession>
    <name>A0A0Q8UXN7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribosome maturation factor RimM</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rimM</name>
        <name evidence="5" type="ORF">ASE19_20060</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Binds ribosomal protein S19.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="2">The PRC barrel domain binds ribosomal protein S19.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RimM family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000015">
        <property type="protein sequence ID" value="KRC46605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896374.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000015.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC46605">
        <property type="protein sequence ID" value="KRC46605"/>
        <property type="gene ID" value="ASE19_20060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1497415at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00014">
        <property type="entry name" value="Ribosome_mat_RimM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011961">
        <property type="entry name" value="16S_RimM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027275">
        <property type="entry name" value="PRC-brl_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011033">
        <property type="entry name" value="PRC_barrel-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002676">
        <property type="entry name" value="RimM_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036976">
        <property type="entry name" value="RimM_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05239">
        <property type="entry name" value="PRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01782">
        <property type="entry name" value="RimM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50346">
        <property type="entry name" value="SSF50346"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02273">
        <property type="entry name" value="16S_RimM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0143">Chaperone</keyword>
    <keyword evidence="1 2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="RimM" evidence="3">
        <location>
            <begin position="4"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="PRC" evidence="4">
        <location>
            <begin position="99"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC46605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="186" mass="19979" checksum="76FB09FA37AF899D" modified="2016-01-20" version="1">MEVVVGRIGKPHGIKGEVTVDVRTDEPDRRYVAGAVLQAESPRGSAFSARTLTVERTRWHQGTLLVVFGELPDRNAAEAARGVVLRAVVPADEVPEDPEEFYDHQLIGLAAHDLEGNHLGELVGLVHGAQDLLRIKTPDGREALVPFVVALVSEVDVAGGRVVIADRPGLVTPFPEDSEDSEEAGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXS5</accession>
    <name>A0A0Q8UXS5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enoyl-CoA hydratase</fullName>
            <ecNumber evidence="1">4.2.1.17</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15580</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.17" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893509.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50040">
        <property type="protein sequence ID" value="KRC50040"/>
        <property type="gene ID" value="ASE19_15580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1498685at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004300">
        <property type="term" value="F:enoyl-CoA hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="264" mass="27970" checksum="3D28995FE0DAA7B1" modified="2016-01-20" version="1">MPITSELRDDGIRLVTMSAPPVNALTVQGWFDVAAALDEASADLATKVVVLRAEGKGFNAGVDIKEMQNTTGFDALLGANKGCYAAFKAVYECSVPVIAAVNGFCVGGGVGLVGNADCVVASEDAYFGVPEVNQGALGAATHMARLVPQHLMRTLYFTARTIPAKDLVPFGSVLEVVPRDELDEAALRVARDIAAKDTRVIRAAKEALNGIDPINVNKSYRWEQGFTFELNLMGVSDELRDDFAGTDKGASRLAGARTSATEEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8UXY2</accession>
    <name>A0A0Q8UXY2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glycine dehydrogenase (decarboxylating)</fullName>
            <ecNumber evidence="8">1.4.4.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Glycine cleavage system P-protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Glycine decarboxylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Glycine dehydrogenase (aminomethyl-transferring)</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">gcvP</name>
        <name evidence="11" type="ORF">ASE19_16230</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 8">The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 8">
            <text>(R)-N(6)-lipoyl-L-lysyl-[glycine-cleavage complex H protein] + glycine + H(+) = (R)-N(6)-(S(8)-aminomethyldihydrolipoyl)-L-lysyl-[glycine-cleavage complex H protein] + CO2</text>
            <dbReference type="Rhea" id="RHEA:24304"/>
            <dbReference type="Rhea" id="RHEA-COMP:10494"/>
            <dbReference type="Rhea" id="RHEA-COMP:10495"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:83099"/>
            <dbReference type="ChEBI" id="CHEBI:83143"/>
            <dbReference type="EC" id="1.4.4.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8 9">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4 8">The glycine cleavage system is composed of four proteins: P, T, L and H.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the GcvP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.4.2" evidence="8"/>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893623.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50155">
        <property type="protein sequence ID" value="KRC50155"/>
        <property type="gene ID" value="ASE19_16230"/>
    </dbReference>
    <dbReference type="OrthoDB" id="70707at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004375">
        <property type="term" value="F:glycine dehydrogenase (decarboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019464">
        <property type="term" value="P:glycine decarboxylation via glycine cleavage system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00613">
        <property type="entry name" value="GDC-P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00711">
        <property type="entry name" value="GcvP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001597">
        <property type="entry name" value="ArAA_b-elim_lyase/Thr_aldolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003437">
        <property type="entry name" value="GcvP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020581">
        <property type="entry name" value="GDC_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11773">
        <property type="entry name" value="PTHR11773"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01212">
        <property type="entry name" value="Beta_elim_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02347">
        <property type="entry name" value="GDC-P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00461">
        <property type="entry name" value="gcvP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5 8 9" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta_elim_lyase" evidence="10">
        <location>
            <begin position="530"/>
            <end position="666"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="8 9">
        <location>
            <position position="689"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00033655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR603437-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC50155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="940" mass="99382" checksum="5676FEAEEA26D996" modified="2016-01-20" version="1">MSAPFVNRHIGPDNDQVETMLDRLGYASIDALMDAAVPKSIRSADELSLPDAVSEEAAAAELRALAGANGPGEPMIGLGYHATVTPAVIRRNVLEDPSWYTAYTPYQPEISQGRLEALINFQTMVSDLTGLTTSGSSLLDEGTAAAEAVALAFRANRKASGPFVIDADALPQTIDVVRTRAEGIGVEILVADLTDGLPEGEVSGVLIQYPGASGRIADIKPVIDAVHERGGLAVVAADLLALTLLEAPGTLGADVVVGSAQRFGVPLFYGGPHAGFISVREGLERQLPGRLVGVSVDAEGRPAYRLALQTREQHIRRDKATSNICTAQVLLAVTAGMYAVYHGPQGLKEIAGDIHGLARRAAASLAAAGIEVVNESFFDTLNVRVPGRAEAVVAAAREASVHLRLVDSDTVGIAFGESAGEATLVAVLAAFGVSAVSAEGEAGLPEDLERTTEFLTHPVFNTHHNETSMLRYLARLSNRDYALDRGMIPLGSCTMKLNATTEMEPISLAGFANLHPFVPAADADGYRVMIEQLEDWLAEVTGYDRVSIQPNAGAQGEFAGMLAIRNYHRANGQGQRDVCLIPSSAHGTNPASAVMVGMKVVVVKAGDDGTVDLDDLRAKCEQYSETLAAIMVTYPSTHGVYEETITELCDLVHEHGGQVYVDGANFNALLGYAQPGKFGGDVSHLNLHKTFCIPHGGGGPGVGPVAVRAHLAPYLPTHPLHPDADRRAGTGAISAAPYGSAGILPISWAYIRMMGAQGLTRATAVAVLSANYVAARLGEHFPVLYRGESGLVAHECILDLRGITAETGVSVDDVAKRLIDYGFHAPTMSFPVAGTLMVEPTESEDLAELDRFCDAMIAIKGEIDQVAAGEWAVDASPLHHAPHTARALVGEWDRAYSREVAVFPAGITVDKYWPPVARIDQAYGDRNLVCACPPMDAYAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V1Z4</accession>
    <name>A0A0Q8V1Z4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Pyridoxal kinase</fullName>
            <ecNumber evidence="1">2.7.1.35</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_15410</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.35" evidence="1"/>
    <dbReference type="EMBL" id="LMIP01000012">
        <property type="protein sequence ID" value="KRC51466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896530.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000012.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC51466">
        <property type="protein sequence ID" value="KRC51466"/>
        <property type="gene ID" value="ASE19_15410"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1480223at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008478">
        <property type="term" value="F:pyridoxal kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009443">
        <property type="term" value="P:pyridoxal 5'-phosphate salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01173">
        <property type="entry name" value="pyridoxal_pyridoxamine_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013749">
        <property type="entry name" value="PM/HMP-P_kinase-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004625">
        <property type="entry name" value="PyrdxlKinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10534">
        <property type="entry name" value="PTHR10534"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08543">
        <property type="entry name" value="Phos_pyr_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00687">
        <property type="entry name" value="pyridox_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phos_pyr_kin" evidence="2">
        <location>
            <begin position="91"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC51466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="281" mass="29539" checksum="4BF3E81AB32BA893" modified="2016-01-20" version="1">MRILSIQSSVAYGHVGNSAAVFPLQRLGHEVWPVFTVHFSNHTGYGAWRGPLLAPADVASVIEGIEERGVLPTCDAVLSGYQGDPAMGAVILDAVARVKAANPSAVYCCDPVIGDVGRGVFVRPGIPELLRDEVLPHADVLTPNHFELEFLAGREARTPGEVLAAVDAVRARGPRDVLVTSVRYDDTDTLDVLAVSDAGAWAVTTPLLPIAPNGGGDLTAALYLAHLLESGSPAVALGRTTASVFGVLEETLAAGTRELQLVGAQEAIAVPAERFEVRQLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2E7</accession>
    <name>A0A0Q8V2E7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_16040</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893589.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50121">
        <property type="protein sequence ID" value="KRC50121"/>
        <property type="gene ID" value="ASE19_16040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1209997at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="256" mass="25426" checksum="B4D24EF7A18D72C3" modified="2016-01-20" version="1">MDLGVRDHVYVLTGATRGLGHATATVLVADGARVVVSGRTAASVEAAVASLEAVGGAGCAVGVVADNASASAPGELVAEALDRWGRLDGVLISVGGPPGGTVSAMTDEQWLAAFDSVFLGAVRLARTVAAELSDGGSIAFVLSTSVRQPIPGLAISNGLRPGLAMVAKTLADELGPEGIRVNGLLPGRIATERVAELDASTGDAAASKAAATAQIPLGRYGRPEEFGQVAAFVLSPAASFLSGVMVPVDGGMSRGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V2S8</accession>
    <name>A0A0Q8V2S8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_18365</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893281.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48880">
        <property type="protein sequence ID" value="KRC48880"/>
        <property type="gene ID" value="ASE19_18365"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1196738at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="41"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="286" mass="31028" checksum="6A807C3D44D1C493" modified="2016-01-20" version="1">MTRSSGPATSAVTSATAPTRHLDADGVRFAYRELGPRGGVPLVLLHHFTATIDDWDPRVLDGIAAERHVVVFDNRGVGGTSGRVPLTVEAMAGDAIAFVRALGLVEVDLLGFSLGGFIAQVVATREPRLVRRLVFAGTGPAGFKGVGRLNRRLLTDTAQGAARRSDPKPLLFFTRTPSGRAAAADYMRRIGERTSDRVERTSLRAAARQMVAIARWGARPPMDLELIRQPALVANGEDDRMLATRGSFELAHRLPDARLVVYPDAGHGGVFQHHDRFVPEVLDFLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3B8</accession>
    <name>A0A0Q8V3B8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17320</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893107.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48701">
        <property type="protein sequence ID" value="KRC48701"/>
        <property type="gene ID" value="ASE19_17320"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1119700at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="33"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="35332" checksum="2247A68E425BDBDA" modified="2016-01-20" version="1">MAEKTDPAGDDVQYVTLHGKKRAFVVKGSGPALLLLHGLACDHTTWSPVIDELAKKYTVIAPDLLGHGVSDKPRADYTLGGYANAMRDLLTVLGIDKVTVVGHSFGGGVAMQFAYQFPERTQRVMLVATGGLGAEVTPLIKLIQVPGWFRVMGVLTLPGVRHLETFALRTASEYGDVGPLRKYTRDLGEVAAIIESWKDRRTRFAIRHLVRAVIDWRGQIVTMSDRAYLSDAMPMAVVWGRDDKVIPVRHASNAAALAPEVRVEVMPDAGHFPHKNHPEEFVRILDDFVSTTEPATYNRARFRRMLKAGATGPVSPVAAATTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V3C6</accession>
    <name>A0A0Q8V3C6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17405</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893815.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49088">
        <property type="protein sequence ID" value="KRC49088"/>
        <property type="gene ID" value="ASE19_17405"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="14"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC49088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="117" mass="12954" checksum="B12471E417292566" modified="2016-01-20" version="1">MFEQFPGGIFPAACSSRVLLDHVTSKWGVLVLVSLTDGPQRWSDLRRRAQGISEKMLAQTLKTLEADGLVHREQQPVMPPRVDYSLTPLGEELAEVMVPMLRWVGRNADAIIGPATT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V4P9</accession>
    <name>A0A0Q8V4P9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putrescine oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_18185</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC49105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893835.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC49105">
        <property type="protein sequence ID" value="KRC49105"/>
        <property type="gene ID" value="ASE19_18185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1442136at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001613">
        <property type="entry name" value="Flavin_amine_oxidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00757">
        <property type="entry name" value="AMINEOXDASEF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="3">
        <location>
            <begin position="16"/>
            <end position="447"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC49105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="453" mass="48519" checksum="0E88271624D7311C" modified="2016-01-20" version="1">MAAHTHDTIIVGAGVTGLTAAWRLTESGQDVVVLEARDRVGGRLRSEDHNGSPFEIGGQWVSPDQDALIDLLAELGLETYARHRSGDSLYVDRAGEAHRFAGEDLPVGELTAKEIDRVIGVLDALAAQMEPDRPWEHPQAAELDRTTFAQWLDAQTDDVEARDNIALYLGPAMLTKPTYAFSALTAVLMAASAGSFSHLVDADFILDRRVVGGLASVPAELAARLGDRVRLGADVTHVEWDASGATVTVDGVQLRAAHVVLALPPTHVRRIRITPELPAELRHAREHQSFGLVIKVQAEYDTPFWREAGLSGTGFAPYGLVHEVYDNTPADAATGTLVGFVSDLSADDLGRLGDEERRARVLASLASYFGERALAPRTYVESDWQHQELTGGAYATSFDVGSLTRYGAALHTPVGPIRFGSSDVAGLGFQHVDGAVRVGGRLAREILAAGEGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V527</accession>
    <name>A0A0Q8V527_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TYR_PHOSPHATASE_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_17935</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000014">
        <property type="protein sequence ID" value="KRC48802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893204.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000014.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC48802">
        <property type="protein sequence ID" value="KRC48802"/>
        <property type="gene ID" value="ASE19_17935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1661477at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016311">
        <property type="term" value="P:dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.4080.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005502">
        <property type="entry name" value="Ribosyl_crysJ1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036705">
        <property type="entry name" value="Ribosyl_crysJ1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000387">
        <property type="entry name" value="Tyr_Pase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03747">
        <property type="entry name" value="ADP_ribosyl_GH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101478">
        <property type="entry name" value="SSF101478"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="SSF52799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50056">
        <property type="entry name" value="TYR_PHOSPHATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TYR_PHOSPHATASE_2" evidence="1">
        <location>
            <begin position="405"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC48802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="481" mass="49896" checksum="E7AD174FFB226907" modified="2016-01-20" version="1">MKLTPAQLDRACGALLGSAAGDALGAGYEFGSARLGPDGPSMIGGGLGGFAPGEWTDDTTMAWCIADVAASGVDLRSEEGLTAIARRFRDWFETGPADIGIQTSKVLRSAGQAPTGSALLATSYDLHARTGHTAGNGSLMRTAAVALPHLDDAAAVAEAAAAVSRLTHYDPRAGEACVLWSLAIRHAILHAELDVRVGLDLLDDEAASYWSARIDEAETRRPGHFNPNGWVVAAFQAAWSAIAHTPVMPGADACRQLTDGLATAIAIGDDTDTVAAIAGALLGARWGASAVPAAWRRILHGYPGLRGEDLVRLAHLAAHRGPGVHGWPTATHIDYSGYGIAGTLVPHPYDDGVLLGDAGALDDLPADITAVVSLCLVGTGQVRAGVEHVFYRLIDVPDPEVNPNLDFLLADAAATVAALRDEGHRVLVHCVAAQSRTPTVGIAYALHRGVPLDEAFGAVCGVLPSAYPNRGFRAALERLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5U5</accession>
    <name>A0A0Q8V5U5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_10130</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894699.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52766">
        <property type="protein sequence ID" value="KRC52766"/>
        <property type="gene ID" value="ASE19_10130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1899954at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.550">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023352">
        <property type="entry name" value="MAPEG-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001129">
        <property type="entry name" value="Membr-assoc_MAPEG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01124">
        <property type="entry name" value="MAPEG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161084">
        <property type="entry name" value="SSF161084"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="63"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="113"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC52766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="132" mass="13653" checksum="0D341227EC106750" modified="2016-01-20" version="1">MSTTVITCIALMAILLFVLGANVTRHRAMRGANGGPQMPTDPADRLLIAQRAHGNAAEYVPTLVVLLVVCSTLTEGWWLDALAIAAAAARLLHAYGMLSSKTLAAHGPVRDSGAMVTYAAGIALGVTALVAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5V1</accession>
    <name>A0A0Q8V5V1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_15450</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000013">
        <property type="protein sequence ID" value="KRC50016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893485.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000013.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC50016">
        <property type="protein sequence ID" value="KRC50016"/>
        <property type="gene ID" value="ASE19_15450"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC50016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="89" mass="9863" checksum="417C8899207F3710" modified="2016-01-20" version="1">MSRDDNDSDVFSFVLSPGEDEPLHVGFEPVGPEYEIRQGDHLRIRVTDSPPEDPVEVTGGKNWVTVWSAPSARIQATNAKGEVLLFLIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V5Y9</accession>
    <name>A0A0Q8V5Y9_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Lactamase_B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09520</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894602.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52664">
        <property type="protein sequence ID" value="KRC52664"/>
        <property type="gene ID" value="ASE19_09520"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1815576at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="38"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="279" mass="30910" checksum="77D49982D0770019" modified="2016-01-20" version="1">MLLNDQPEVAFHWLRVGHCKGPEAMARQGGRLRIIEFPSYVGALHHPTHGWTLFDTGYSQHFFDATSRMPELLYRNTLPVSLPDHEHLPRQLAALDIDPADVRRIVVSHFHGDHVGGLLDHPRARIIAGLAGAEHALSLRGFNATRHAILPALLPDDLRDRLDPVDGFPRVQVGPLTAWDLLGDRSLLAVDLPGHMPGHLGLLFTSGGRQALLVGDAAWTSRSFKDLKPPSRLAKGVMHDWPTTVRTLGVLHELDARHDDLLVLPAHCPEGHAAWYAER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-12-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6F7</accession>
    <name>A0A0Q8V6F7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10455</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894757.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52824">
        <property type="protein sequence ID" value="KRC52824"/>
        <property type="gene ID" value="ASE19_10455"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1834855at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043746">
        <property type="entry name" value="DUF5691"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18944">
        <property type="entry name" value="DUF5691"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="451" mass="47886" checksum="AFAD622782B43C9D" modified="2016-01-20" version="1">MTTSTWWQQATAAALLGTARREPPPLPADLGVEARGDGSPETALLDAAAVGGALLRAGGRPPPTVVATTPVAPPETQPEAPVRSVQLLALLLDQPPVAARLRPLALRHWLDAATARGLRVPHVALPRLLALAGQQTELQHAIRPVLGERGRWLAGLRADWAWGVETGTALAPVAADVLTLEAWQALPAAERLDRLDGAPAEVLEAALDERSDKVRRQACLLLDARPGSARAQRMAERLRPLVSSAGRLRRSLEVELPTQPDAAGVRDGLSTTRAGSQRERWLELICAGAPLAIWTDVTGKDPAHTWPLITQPAARAGVLRAVRARHDTAWAQAAVADAPDLLGVLPPAEQDDAALRLLRGHRTPAGVGAVLQHVRTRWSPALSAGVVDVLRHTPPAGVAGSAWLAPLAEALDPSVRPAVSAWARADHRWGSLPADLDQYLSFLPAITEAFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6I0</accession>
    <name>A0A0Q8V6I0_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Proton-translocating NAD(P)(+) transhydrogenase</fullName>
            <ecNumber evidence="3">7.1.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">ASE19_11380</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <reference evidence="13 14" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H(+)(in) + NAD(+) + NADPH = H(+)(out) + NADH + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:47992"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="7.1.1.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.1" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894920.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52990">
        <property type="protein sequence ID" value="KRC52990"/>
        <property type="gene ID" value="ASE19_11380"/>
    </dbReference>
    <dbReference type="OrthoDB" id="464096at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008746">
        <property type="term" value="F:NAD(P)+ transhydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902600">
        <property type="term" value="P:proton transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007886">
        <property type="entry name" value="AlaDH/PNT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007698">
        <property type="entry name" value="AlaDH/PNT_NAD(H)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026255">
        <property type="entry name" value="NADP_transhyd_a"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024605">
        <property type="entry name" value="NADP_transhyd_a_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01262">
        <property type="entry name" value="AlaDh_PNT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05222">
        <property type="entry name" value="AlaDh_PNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12769">
        <property type="entry name" value="PNTB_4TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000203">
        <property type="entry name" value="NADP_transhydrogenase_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01002">
        <property type="entry name" value="AlaDh_PNT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01003">
        <property type="entry name" value="AlaDh_PNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00561">
        <property type="entry name" value="pntA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0521">NADP</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="168"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="405"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="428"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="457"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="483"/>
            <end position="503"/>
        </location>
    </feature>
    <feature type="domain" description="AlaDh_PNT_N" evidence="12">
        <location>
            <begin position="4"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="AlaDh_PNT_C" evidence="11">
        <location>
            <begin position="146"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM01002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM01003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KRC52990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="515" mass="52915" checksum="0D9742A331A5155A" modified="2016-01-20" version="1">MLIGIPRESKPGETLVAATAKTVSQLTNLGYDVIVESGAGVHADQPDSAFMEAGVRVGTPEEVWAADVVVKVNAPSDEEIGRLRQGATIISMMAPGRSPELLEKLQAQGVTALAMDAVPRISRAQSMDVLSSMANVAGYRAVVESAHEFGRMFTGQVTAAGKIPPARVFVVGAGVAGLAAIGAASAMGAIVRAFDVRPEVAEQVESMGAQFVHVDMEQEVSSDGYAKEMSEAQVAATAAMYDEEARAADIVITTALIPGRPAPSLLTAETVAGMRNGSVIVDMAAANGGNAAGTVADQKVVTDNGVTILGYTDLAGRLAAQTSQLYGTNIVNLLKLLTPEKDGNLGLDFEDVVQRGITVVDGRSESAQITWPPPAVQVSAAPAAAAPAAAAAAEPKAPMSAGTKVGLVLGAIGLFWLVNALAPTDELRRHFTVLMLSIVIGYYVIGKVAHALHTPLMSVTNAISGVVVVGALLQVAAGDDLVLGLSLVAILLASINVFGGFAVTRRMLAMFSKGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6N6</accession>
    <name>A0A0Q8V6N6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_10395</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52815">
        <property type="protein sequence ID" value="KRC52815"/>
        <property type="gene ID" value="ASE19_10395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="66" mass="7264" checksum="9D712896A63755CC" modified="2016-01-20" version="1">MYVSDKEITMTTSSLTHKHRATEPLPPAERPTATRAHRAHRATDLPIAAVLGILLVLIAVYFSLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V6S8</accession>
    <name>A0A0Q8V6S8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">UDP-glucose 4-epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_11225</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894899.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52966">
        <property type="protein sequence ID" value="KRC52966"/>
        <property type="gene ID" value="ASE19_11225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1912908at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008497">
        <property type="entry name" value="DUF779"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05610">
        <property type="entry name" value="DUF779"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009151">
        <property type="entry name" value="DUF779"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC52966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="122" mass="13103" checksum="482AA7719A172D09" modified="2016-01-20" version="1">MDRVAVTGEAAELLRSLTEAHGPLMFHQSGGCCDGSAPMCYPDGEFLLGGADVHLGDLDVGLDRAVPVWMSKAQFEYWSHTHLTIDVVPGRGAGFSLEAPHGVRFLIRSRLLTDEEYAGASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V736</accession>
    <name>A0A0Q8V736_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_11185</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894892.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52959">
        <property type="protein sequence ID" value="KRC52959"/>
        <property type="gene ID" value="ASE19_11185"/>
    </dbReference>
    <dbReference type="OrthoDB" id="489714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_5" evidence="1">
        <location>
            <begin position="38"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="293" mass="32416" checksum="C74D799F298742DE" modified="2016-01-20" version="1">MTWFESPTDVAARLEAAGYLADAATATTTFLAGALEKPLLLEGPAGVGKTELAKAVSRATGAELVRLQCYEGLDEARALYEWNYKKQLLRIQAANAASSSGQDWNATHDDIFTEEFLLTRPLLTAIRRDEPTVLLIDEVDKTDIEVEGLLLEVLSDFQVTIPELGTVAALRRPYVVLTSNASRELSEAVKRRCLYLHIDYPDAARERQILQQQVPGLDDRIAQQVVETVARMRELELKKAPSIAESVDWARTLIALEIRDLDAAAIARTLGAVLKHQSDHDRATKELKLNRAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V753</accession>
    <name>A0A0Q8V753_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aldose 1-epimerase</fullName>
            <ecNumber evidence="3">5.1.3.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_11285</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>alpha-D-glucose = beta-D-glucose</text>
            <dbReference type="Rhea" id="RHEA:10264"/>
            <dbReference type="ChEBI" id="CHEBI:15903"/>
            <dbReference type="ChEBI" id="CHEBI:17925"/>
            <dbReference type="EC" id="5.1.3.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 3">Carbohydrate metabolism; hexose metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the aldose epimerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.3" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52975">
        <property type="protein sequence ID" value="KRC52975"/>
        <property type="gene ID" value="ASE19_11285"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00242"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004034">
        <property type="term" value="F:aldose 1-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019318">
        <property type="term" value="P:hexose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015443">
        <property type="entry name" value="Aldose_1-epimerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008183">
        <property type="entry name" value="Aldose_1/G6P_1-epimerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014718">
        <property type="entry name" value="GH-type_carb-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01263">
        <property type="entry name" value="Aldose_epim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005096">
        <property type="entry name" value="GALM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="SSF74650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="62"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="158"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="4">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="291"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="228"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR005096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR005096-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR005096-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR005096-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC52975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="330" mass="35370" checksum="C8F8209FB61367D4" modified="2016-01-20" version="1">MVVVGRAPGPELHLLPVGATIQRLVVTGGDGVRRDVALGLADGDAVRASTDYIGSVVGRYANRIAHGRWSLDGADHQVPENDRGHHLHGGPAGFHTRTWDVVAQAEDAVTFQLVSPDGDAGYPGELTVRASYRVEGEGVHLELTATTTAATVVNLTSHVYLNLHGTGTIDDHLLHVDASRYTPVDAAAIPVGEHAPVDGTPFDLRHPTPLGDPIRTRHPQVVDARGIDHNLVLDGEGWRRVAVLDGPATRTRMELWSDQPGLQVYTGNFLAGTSLDRTGRLLRQGDGLCLEPQLAPDSPNHVPGPDWPSAVLRPGDTYVNRMAWLFSALP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V7B7</accession>
    <name>A0A0Q8V7B7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Regulator of SigK</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Sigma-K anti-sigma factor RskA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_12950</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895724.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53262">
        <property type="protein sequence ID" value="KRC53262"/>
        <property type="gene ID" value="ASE19_12950"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1740922at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1320">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018764">
        <property type="entry name" value="Anti-sigma_K_RskA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041916">
        <property type="entry name" value="Anti_sigma_zinc_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027383">
        <property type="entry name" value="Znf_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10099">
        <property type="entry name" value="RskA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13490">
        <property type="entry name" value="zf-HC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="103"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="zf-HC2" evidence="4">
        <location>
            <begin position="8"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00030803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC53262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="251" mass="26288" checksum="6D65F1FEFC7E674F" modified="2016-01-20" version="1">MTDHDLHALSGAYALDALDDDERARFEAHLADCAGCREEVASLGEAAALLGTEPVEPPAAVRDAVLSGIRSIRPLPPITSEPAAEPVDDLAARRTRRSLVQRIAGTPLIAAAAVVLLLAVGTAWLRPWTEDPTPPPATAVEQVLRAADATRVDKEFPDGSRATVVLSRSLGGAVIQTEDMAPAPQGKVYELWLQRPDGAMVPAGLMPDDPDAELRLEGDATHAKAVGITIEPDGGSELPTTTPIAVLDLAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8E9</accession>
    <name>A0A0Q8V8E9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">PadR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_13915</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897068.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53435">
        <property type="protein sequence ID" value="KRC53435"/>
        <property type="gene ID" value="ASE19_13915"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1706427at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005149">
        <property type="entry name" value="Tscrpt_reg_PadR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03551">
        <property type="entry name" value="PadR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PadR" evidence="3">
        <location>
            <begin position="12"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="178"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="118"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC53435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="197" mass="22538" checksum="07FF0FF0ADF14E9A" modified="2016-01-20" version="1">MARRGDTIELAVLGLLHEGPMHGYELRKRLNLMLGWGRLLSYGSLYPALKKMLRGDLIEETVPSGPPTRRQRIVYKVTDLGTEEFARLMSEVGPAAWEDDNFDIRFRFFSSTDMEIRLRVLEGRRSRLQERLDRVQRELSMTQAEADRYAAELQRHGVESVEREVRWLSDLINAERNVQVQSTPAPDAPTASPSAPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8K0</accession>
    <name>A0A0Q8V8K0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Spermidine/putrescine ABC transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_13875</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53678">
        <property type="protein sequence ID" value="KRC53678"/>
        <property type="gene ID" value="ASE19_13875"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="21"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="79"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="116"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="156"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="202"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="257"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="80"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="287" mass="31028" checksum="4578E2E655AC1916" modified="2016-01-20" version="1">MRGPAARPVSRLLHRRVWLRLTLLLSAPLAWMILVYVVALAALLITSLWSVDSLSSEIDRTWTLDNFRTLWESDVYRRVTIRTVSVALAVTVIDVAIALPIAFYMAKVASPRARRMLVVAVLTPLWASYLVKVFAWRIVLSEGGLADWSGIGSPGYGLTAVIITQSYIWLPYVILPIFAALERVPDSLLEAAGDLGAPSPMVLRSIVLPLLVPGIVAGAIFSFSLTLGDYITVNIVGGANQMLGNLVFVNAGAANNLPLAAAIAMIPIVVMLVMLTAIRRTGALENI</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V8V1</accession>
    <name>A0A0Q8V8V1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nitroreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11650</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a quinol + H(+) + oxidized coenzyme F420-(gamma-L-Glu)(n) = a quinone + reduced coenzyme F420-(gamma-L-Glu)(n)</text>
            <dbReference type="Rhea" id="RHEA:39663"/>
            <dbReference type="Rhea" id="RHEA-COMP:12939"/>
            <dbReference type="Rhea" id="RHEA-COMP:14378"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="ChEBI" id="CHEBI:133980"/>
            <dbReference type="ChEBI" id="CHEBI:139511"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the F420H(2)-dependent quinone reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895195.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53640">
        <property type="protein sequence ID" value="KRC53640"/>
        <property type="gene ID" value="ASE19_11650"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1622823at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004378">
        <property type="entry name" value="F420H2_quin_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04075">
        <property type="entry name" value="F420H2_quin_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00026">
        <property type="entry name" value="hi_GC_TIGR00026"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00029371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="148" mass="16447" checksum="4D75C448342D4D1F" modified="2016-01-20" version="1">MTLQGEYEPSSQQWVRDQVAAYEASGGQEANTLRGSNDPIVVITSVGSKSGKLRKNPVMRVEKDGVYVAIASKGGAPDNPSWYANFVAHPEVDLQDGPVAKPYRARIAQGEERQQWWDHAVATWPTYASYQEKTDREIPVFLLEPIEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V962</accession>
    <name>A0A0Q8V962_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06945</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895251.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53820">
        <property type="protein sequence ID" value="KRC53820"/>
        <property type="gene ID" value="ASE19_06945"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2226427at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC53820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="95" mass="10815" checksum="84DCF3A7F42F5219" modified="2016-01-20" version="1">MQQLRQSNKRLDAEECGELVSRYKAGGTVRGIAREFGVHHQTARRILDDVAAAVQMYESGVSIQQVAERFHQKYQSMRQELLRAGVVMRPSVAER</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V986</accession>
    <name>A0A0Q8V986_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_06935</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53818">
        <property type="protein sequence ID" value="KRC53818"/>
        <property type="gene ID" value="ASE19_06935"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1682040at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="231" mass="25577" checksum="4B70171D7B65EDBB" modified="2016-01-20" version="1">MVEAVGLGAFLECFVSLEVLPLYLEFPLLVFTAFVAMLDAFAKNHDELKPAARLTSIVLVLIGVTLLFVSIEGLVDNKANLDGRDVLNQFLLPMWLTIGAVPYVYAVALWAGYESLMINFKIWNDRQRVPLRVGLGAAVELRGSLVDVAGFRGMAARRAVESNSFAGARAAVREFKEQRAADRTTRAAARRRLEQNTGVVGVDEDGLVLDRREFRETKESLEWLASCQRGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8V9D4</accession>
    <name>A0A0Q8V9D4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_07725</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC53957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53957">
        <property type="protein sequence ID" value="KRC53957"/>
        <property type="gene ID" value="ASE19_07725"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1580596at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036415">
        <property type="entry name" value="Lamin_tail_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74853">
        <property type="entry name" value="SSF74853"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359822" evidence="1">
        <location>
            <begin position="38"/>
            <end position="860"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="860" mass="89608" checksum="148E066F97F14195" modified="2016-01-20" version="1">MRRRVVVTESAPVPGRSLAALVVSAVAVLVAVPPAYAEGDPAPACPDLVPALDAPAGLVTDAGWDLCAAAAAHAAAWAPATDFPGRDGDVAVMTTGSAAQATGQEAVTPGGVALGQATAEPDSGPHGPVEDRSTYRITVDVPTTDNCLGFDYVVGSDEFGQTNPPRFDGLVATIDGDDWRLSDPGFGGWLQFQGGDTFAGGPLLADSPWRDSAAPAADLTYAGRTPVQQAVVGVTPGSHTIRLSVFDGVTQAGEPYNGLRDTGVLLDDLHTWADPEGCASPHNQLPVAGDAGDEQQPLVVFAGGANQLPSLDDQYAFDPDGDQLQMVDPAEQPAHGAVVCVPASCSYTPDEGYTGPDQFRYRVTDGNGGYASAIAWLDVQPDVPVLSGGLNAITQGPTGQLTFTIAVSDSFGDLQPGTLVRLRGAMGNAALTQLATATTAETGVATIQFHPPTTGQWTFQAMVDAAGALPLEIESRWFDLDPVQTLEVTWPAHLYADRLNTVSVRLKRLSGAYATTGSVTVAVGDYRQGMCCFEVGSFAVNGAGVAAVQLQPDAPTDQYEVQIRYDRDPEVFAGGQRLVEEWSGANHAPDVLGEQLDAVAHQPLALDLAANDLDADGDPLTYAVVTPPQHGTLACEADGACVYRPGGHLGADAFVYSVTDGLSPAVEATVDLTVQAAPAPSVTLGPATSVQSVRGKVTLSGKVTPASAGAPLQLQRLDGSTWTTIARRTLTTGASVPYLFSVASTTSRSARYRVVLPSYDGRLGRTSATATIGWQAAALVAHRATGREWVQVRNTGKVAIGLRGWTVRTRAGFVLRLPTRTLVPGASVRVYVGRVARLGDRHDVLTLRNPRGVTAAVRRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA01</accession>
    <name>A0A0Q8VA01_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Peptidase_S8 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_08415</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54076">
        <property type="protein sequence ID" value="KRC54076"/>
        <property type="gene ID" value="ASE19_08415"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1789903at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="SSF52743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006359839" description="Peptidase_S8 domain-containing protein" evidence="2">
        <location>
            <begin position="49"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="393"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S8" evidence="3">
        <location>
            <begin position="119"/>
            <end position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC54076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="419" mass="42241" checksum="3BA682489DBABAC4" modified="2016-01-20" version="1">MPAAAHELGRRGAHRAVMRVIRGHRTTGAALMGAALPLLVLPGAPARAAEDPVCGSTDVDTPQRTVTGANAANDALQVPAATALVRKAGRRPGEGVTVVVVDTQVPGGVAVAPRPDLVSSHGLTAAGIVGGPEQGKGDVAVGIAPAADVRPVRFYDAERGSAADGEAEPEPGALASALAGISVGRRTVVLVPAVVGPGDSLRSALERLARRGALVIAPSGDRPQQADGLLDDYVGDARPGQDAAADVWPAAVDDAVLAVGLAPPLSSLALRNSEVDLAAPGVGAVSIGAQGGWCRVTEPSTAWAAAQVAGVAALVWSIHRDDSAAELRARLEGTASGNGEASPLTGYGVVQPVEALQRPLESLAPGGQRAAQVPRGDVPPQRADLLADTRHDAVWWGLGGGGALVVLLVLRPALARRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VA92</accession>
    <name>A0A0Q8VA92_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08040</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895447.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54015">
        <property type="protein sequence ID" value="KRC54015"/>
        <property type="gene ID" value="ASE19_08040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="48624at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="15"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="836" mass="91538" checksum="8C352C026A7C63F0" modified="2016-01-20" version="1">MSAEPTPDRDVQRALRSAQLAYERVEAEALRYRNERDKARETASALRQRLQERNAMLAQAKRKRDSLKVRVAELEGSRGIRLERRLRKLRRRLAKPAAPAPARKQPAAPSVPVRAAAEVTTFAATLAVDPAGLAERTAAAERAAARLRERADGRRLRVAAIADDFTRLCLEPDCDLLNISASGWHEELEGFDPDLVFIESAWRGKDGSWRDKVSPVSDELRSVIDWARAAGVATVFWNKEDPVHFERYVEVAAAVDHAFTSDLDMLTEYQLRLGHQRVGFLPFAAQPRQHNPLEITERRDALMFAGSYYAQYPERMVDLRATVTGAIAAMPVEIYDRNYGTTYPELQFPEEYRSHVVGTLGPEEMDLAYKGYRYSLNINTVKRSQTMFARRVYELLASNTVTISNWSRAIGIFFADLVPMSDSAEEIEKILSRMVADPDGTDRLRVLGVRKVLGEHTYAHRLAYVVASVTGRTVEESRSRVGVLVATDDPATAVRQVAAARAQTGVEVEVRLVSAADEVRAWATGADVTVLDPAELADTSLAALFGTVDGVAVFHGDDWYGEHYLRDLVDAWTYSSAEVVGKDRRHRLEEGRLVETGASSYVEVGGLPLRRALVTVAAAERIRAAEALTGDAVPSGGAQLSLHRFDYCEGGAADLAEAAAASADLPIDQGIAVADVWAQAATVVADQALREATVVVPEALEPALPADPDERLRVSHHGSWTVIQSSLDEGEVAQVVGAARLDLTGDWASSWREGTARFAQRSGGDLDVVLVLRFQDEDGTTLGEVRADANAVNEVPVPADARWAEVAWEVSGPGRQRLSPVILAAWPFGTPVVLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAC9</accession>
    <name>A0A0Q8VAC9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_10460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894758.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52825">
        <property type="protein sequence ID" value="KRC52825"/>
        <property type="gene ID" value="ASE19_10460"/>
    </dbReference>
    <dbReference type="OrthoDB" id="489714at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_5" evidence="1">
        <location>
            <begin position="90"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="371" mass="40145" checksum="786B1CDC29DD1A03" modified="2016-01-20" version="1">MTLTEPTGTAPSPDGVLRLHAEDEYAHELAALAVADDRPRPPQWRLSPWAVTTYLLGGTLDDGTVITPKYVGARRLMEIAVASLATDRALLLLGVPGTAKSWVSEHLAAAISGSSTLVVQGTAGTPEESLRFAWNYARLLAEGPSRAALVPSPVMRAMETGALVRVEELTRIPADVQDALISILSEKTLPLPELDDEVQARRGFNVIATANNRDKGVNELSSALKRRFNTLVLPLPDTLEEEVEIVRTRVSSIGRGLELPEELAATPEIERVVTIFRELRGGMTLNQRTTVKSPTSTLSTAEAISVMTNGVALAAHFGDGTVRAEDLAASLTGAVVKDPVQDVIVWQEYLETVVKDRPEWADLYRACRELT</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAF9</accession>
    <name>A0A0Q8VAF9_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_08370</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895500.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54068">
        <property type="protein sequence ID" value="KRC54068"/>
        <property type="gene ID" value="ASE19_08370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="183" mass="19606" checksum="C9BDA3EC14E38728" modified="2016-01-20" version="1">MIRATERRPLVLAIAVVGLLLASMNVLMWRIVQNTSEDAPSSTEEVLPALPPTQGGGSARALLDELDGLQKQLAEPLDGLQDQLETLNANTGDLGRLSENSQELVHIKEQMSKLLGRLNDISSATADLAAISGDMGSISADAHAMAQTTEALQTSFAKALTVLEQMVSEVQQIRKCAQRPLFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VAG8</accession>
    <name>A0A0Q8VAG8_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NHase_beta domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_09130</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894532.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52595">
        <property type="protein sequence ID" value="KRC52595"/>
        <property type="gene ID" value="ASE19_09130"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1718359at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018822">
        <property type="term" value="F:nitrile hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042262">
        <property type="entry name" value="CN_hydtase_beta_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024690">
        <property type="entry name" value="CN_hydtase_beta_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008990">
        <property type="entry name" value="Elect_transpt_acc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023808">
        <property type="entry name" value="Nitrile_Hydratase_acc_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02211">
        <property type="entry name" value="NHase_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50090">
        <property type="entry name" value="SSF50090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03889">
        <property type="entry name" value="nitrile_acc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NHase_beta" evidence="1">
        <location>
            <begin position="31"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC52595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="143" mass="16096" checksum="B908735F70A0A142" modified="2016-01-20" version="1">MLPAPYADPVDQVAARDRITDLVCDLPEASPEQLSFEHPWEIRAFAMAVSAHRELGFDWTAFQQALITSISGWEERTGTSDRGWSYYEHWLAALESVLADLGLLSTDELGRQTRDVLAVPANRNHHEAHTEPIAVDPARRTHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VB85</accession>
    <name>A0A0Q8VB85_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADPH:quinone oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_12175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895056.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53129">
        <property type="protein sequence ID" value="KRC53129"/>
        <property type="gene ID" value="ASE19_12175"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1027479at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05276">
        <property type="entry name" value="p53_inducible_oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002364">
        <property type="entry name" value="Quin_OxRdtase/zeta-crystal_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014189">
        <property type="entry name" value="Quinone_OxRdtase_PIG3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02824">
        <property type="entry name" value="quinone_pig3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01162">
        <property type="entry name" value="QOR_ZETA_CRYSTAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="10"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="325" mass="33314" checksum="3E08B59567B9487C" modified="2016-01-20" version="1">MRAVTQTSPGGPETLVVTELPDLVPGAGEVLIEVAATAVNRADLLQRQGFYPPPPGASEVIGLECSGTVAALGEGVTDWAVGDQVCALLAGGGYASQVVVPAGQVMPIPDGVDLVTAAALPEVACTVWSNVFMVAGLRPDEVFLVHGGAGGIGTFAIQLASRLGARVFTTAGSPDKLARCEELGAERAISYRDEDFVAVVREATDGHGADVVLDNMGAKYLAPNVDVLATEGRLVIIGMQGGSKAELNIGQLLSKRGAVIATTLRARPKDGKANICTSVVEHVWPLVADGSITPVVSAVLSLDDVADAHRLIEGGDNIGKVLLTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBA2</accession>
    <name>A0A0Q8VBA2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_11035</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894864.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52931">
        <property type="protein sequence ID" value="KRC52931"/>
        <property type="gene ID" value="ASE19_11035"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="57"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="82"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="121"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="244" mass="24530" checksum="9B3F772B5DEB3E15" modified="2016-01-20" version="1">MSDPNQPYGAVPPPSYPPPPPGPPPAFPPPGFPPGGPPSGPPGFPPPGGPSGRGKGLLIALGILGALALVGVVVGLVLLLTGDDDGDDDADGRDTTSESTSPSDDTGTDEPTDEPTEPTDATDSTDATDASTTDAPSPQGSSTADAVADDPEAVVEAFMNSVFSGDCATAEDLVTEAYLEKEGNCDPDDIPTGFEDQVDYAVGKATITGSTAKVPVQIIFGGDKESSTVSLVQEDGHWRISQAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VBX8</accession>
    <name>A0A0Q8VBX8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">ASE19_04255</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <reference evidence="9 10" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">Root79</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894380.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54700">
        <property type="protein sequence ID" value="KRC54700"/>
        <property type="gene ID" value="ASE19_04255"/>
    </dbReference>
    <dbReference type="OrthoDB" id="760677at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="7"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="124"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="232"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KRC54700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="381" mass="42342" checksum="3D75F136DF2746DA" modified="2016-01-20" version="1">MKRDIYNEDHEDFRKSVRGFLERSVIPNLDKYIEDRAFTRELWLEAGAQGLLGLLIPEEFGGAEANDYRFTAIVNEEFSAVNAALASCWGIHADTVTPYLMALLTDTQRKRWLPGVASGEIWCAIGMTEPSGGSDLAALKTTAVRDGDSWIINGSKTFITNGYSADLIVVAARTSPEKKARGITLFAVASDVEGFSRGRKLDKVGQEEADTAELFFENVRVTDDEVIGEVDGGFIHMMQHLPQERLSSAVGNLSHAKQILLETLEYTKERQAFGQPIGAFQHNKFLLAQMFTQVDVAQAFVDKCVQAHADGELTAIDAAKAKWWTSQTQSEVLDHCVQLHGGYGFMNEYRVARAWRDARVTRIWAGSNEIMKELIGRDLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VC87</accession>
    <name>A0A0Q8VC87_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04805</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894285.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54796">
        <property type="protein sequence ID" value="KRC54796"/>
        <property type="gene ID" value="ASE19_04805"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1852102at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007251">
        <property type="entry name" value="Iron_permease_Fet4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04120">
        <property type="entry name" value="Iron_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="131" mass="14320" checksum="201BBCE6BD8C6FB9" modified="2016-01-20" version="1">MESNPASESRHGTRGPGRFEVFVDAINHRISRAPFFGVIVVALALWGLSKPLWASTTKWELGLHTGSSILSLLLLVLLENAGRRGEEASQEKLNVIAEALSDLMAHQPDESGELGASVRRLREAVGLEERH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCK7</accession>
    <name>A0A0Q8VCK7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydroxyglutarate oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_04630</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC54767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894315.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54767">
        <property type="protein sequence ID" value="KRC54767"/>
        <property type="gene ID" value="ASE19_04630"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1371190at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="22"/>
            <end position="410"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC54767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="414" mass="44453" checksum="C31CB90915E8F4D8" modified="2016-01-20" version="1">MRPAYAEPPTPRCHDGPVEQTIAIVGAGIVGLAVGRELTLRRPGTRVVVLEKEDRVAAHQTGHNSGVVHAGIYYRPGSLKAELCTRGRLLLRDYCAEHALPYDECGKVVVAVDPDELGRFEALERTAHENGVPGLRRLDAAGLSEVEPHAVGLAALHSPHTAITDYVAVARQLAADVVAAGGAVHLSSPVTAIDPAGGRVRVRTPGTSYDVDRLVVCGGLQSDRLARLAGGGADPRIVPFRGEYLAVRRELQDLVRGMVYPVPDPRYPFLGVHFTRRVTGALEVGPNAVLAPHRDRYDRCAVSVADLASTAAWPGFWRMARQHWRTGVDEVRGSLSVRAYLRSAQRYVPAIGPDDVVRAGFGIRAQALERDGTLVDDFRIDHLGGVTVVRNAPSPAATSSLAIAEHVVDRVETA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VCR8</accession>
    <name>A0A0Q8VCR8_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06250</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056894448.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55038">
        <property type="protein sequence ID" value="KRC55038"/>
        <property type="gene ID" value="ASE19_06250"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1998755at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="109" mass="12133" checksum="0CBB1850BA0E45C8" modified="2016-01-20" version="1">MEPLCPPWCVTTAAEHEYDDQGAWLHEGPRFGLLRTWCLDGPEPVFTATLSEEVGDAGELDVDQLRRLATDALDVAMWIDQQTRIGLTRLGQSVVELVREAHARSSRSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD06</accession>
    <name>A0A0Q8VD06_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MFS transporter permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_14595</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896948.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53555">
        <property type="protein sequence ID" value="KRC53555"/>
        <property type="gene ID" value="ASE19_14595"/>
    </dbReference>
    <dbReference type="OrthoDB" id="460405at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010290">
        <property type="entry name" value="TM_effector"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05977">
        <property type="entry name" value="MFS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="141"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="220"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="257"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="287"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="321"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="362"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="391"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC53555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="422" mass="43777" checksum="C7E47969AE1891E5" modified="2016-01-20" version="1">MLADTRPLRNPHFRRLWSANIVTVVGAQLTVVAVPAQIYADTGSSAYVGLTGVFGLVPLVVFGLWGGALADHFDRRTLMLVTTTGLIGTAALFWLQAAFGNTNVWLLLSLFAVQQAFFAINQPTRSAILPRLLEPEVLPAANSLNMTVMQAGAIGGPLIAGILIPFTGFSWLYLADAICLLATLWAVVRLPRLPVEGVVSGTPGLRSVVEGLAYLRTQPVLMMSFVVDIIAMVFGMPRALFPEIAHESFLGPEEGGLAFALLFAGIPAGAVLGGVFSGWVSRIARQGVAVIWCIVVWGLAMVGFGLAVLGADATSGSARPWLVVAVLMLVVGGAADMASAAFRTSMLQSAAADEVRGRLQGIFIVVVAGGPRIADVAHGASAAVVGTAAAAAGGGVLVVVLVVVAALVVPSFVRYRITAGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VD38</accession>
    <name>A0A0Q8VD38_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Flg_hook domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_09280</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC52621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC52621">
        <property type="protein sequence ID" value="KRC52621"/>
        <property type="gene ID" value="ASE19_09280"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021136">
        <property type="entry name" value="Flagellar_hook_control-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038610">
        <property type="entry name" value="FliK-like_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02120">
        <property type="entry name" value="Flg_hook"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_hook" evidence="2">
        <location>
            <begin position="16"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="103"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="105"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="137"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC52621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="184" mass="19194" checksum="435B5F5E7B68C8C1" modified="2016-01-20" version="1">MGKAVVQQVFPEVTRLASTAGNGTHRITLTLQPEQLGEVRVTLVVRDGSVHVRLAGGAGVDGVDGAAVHRALAGGAPELQRLLERTGAEARVSVRDPFAAALPTVTGPASSTAPQPVLPTASGQPGFQTGPDAQSRSDPQARHDGQSAREQPARDQPRQHQPRPSAYPVDHVPVPATGRLDRTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VEK6</accession>
    <name>A0A0Q8VEK6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">GTP cyclohydrolase 1</fullName>
            <ecNumber evidence="5">3.5.4.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">GTP cyclohydrolase I</fullName>
            <shortName evidence="5">GTP-CH-I</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">folE</name>
        <name evidence="7" type="ORF">ASE19_08060</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>GTP + H2O = 7,8-dihydroneopterin 3'-triphosphate + formate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17473"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58462"/>
            <dbReference type="EC" id="3.5.4.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Cofactor biosynthesis; 7,8-dihydroneopterin triphosphate biosynthesis; 7,8-dihydroneopterin triphosphate from GTP: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homopolymer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GTP cyclohydrolase I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.16" evidence="5"/>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895451.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54019">
        <property type="protein sequence ID" value="KRC54019"/>
        <property type="gene ID" value="ASE19_08060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1632367at2"/>
    <dbReference type="UniPathway" id="UPA00848">
        <property type="reaction ID" value="UER00151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003934">
        <property type="term" value="F:GTP cyclohydrolase I activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035998">
        <property type="term" value="P:7,8-dihydroneopterin 3'-triphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.286.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00223">
        <property type="entry name" value="FolE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043133">
        <property type="entry name" value="GTP-CH-I_C/QueF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043134">
        <property type="entry name" value="GTP-CH-I_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001474">
        <property type="entry name" value="GTP_CycHdrlase_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018234">
        <property type="entry name" value="GTP_CycHdrlase_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020602">
        <property type="entry name" value="GTP_CycHdrlase_I_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11109">
        <property type="entry name" value="PTHR11109"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01227">
        <property type="entry name" value="GTP_cyclohydroI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00063">
        <property type="entry name" value="folE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00859">
        <property type="entry name" value="GTP_CYCLOHYDROL_1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00860">
        <property type="entry name" value="GTP_CYCLOHYDROL_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4 5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 5" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="GTP_cyclohydroI" evidence="6">
        <location>
            <begin position="24"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC54019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="206" mass="22532" checksum="9340C6BD8A193891" modified="2016-01-20" version="1">MTDAISTPDREPADVPAFDQERAAAAVRELLIAIGEDPDREGLRETPARVARAYAEVTSGLRMTAEDVLTTTFDLGHDEMVLVRDIELWSMCEHHLVPFTGVAHVGYIPAETGKITGLSKLARLVDVYAKRPQVQERLTTQVADSLMEILEARGVIVVIEAEHLCMTMRGVRKAGARTITSAVRGTFLTEPSTRAEAMALIHSPRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VG27</accession>
    <name>A0A0Q8VG27_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14215</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897015.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53488">
        <property type="protein sequence ID" value="KRC53488"/>
        <property type="gene ID" value="ASE19_14215"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1437290at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="21"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="44"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="205" mass="22409" checksum="03D1DFCA38166284" modified="2016-01-20" version="1">MSEQAAPPRKRRPYAARVPMEERRTQLLDAALRVIDRDGYDGVSIDAIAKEAGVTRPVVYGAFDGLGPLLTALLDRQQQRAITQLFAALPTETATDPVAVVDLSGPRLHQMLLDDPVTWRAILQSPANVPEVVRARIEGDRQQVRVIIERLVTGVLGEKVDAPVMAHGIIALLEHFGRLVLDDPEQYDAARLTAAARALAASWTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VH42</accession>
    <name>A0A0Q8VH42_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_02580</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892746.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56728">
        <property type="protein sequence ID" value="KRC56728"/>
        <property type="gene ID" value="ASE19_02580"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2047691at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007061">
        <property type="entry name" value="DUF664"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04978">
        <property type="entry name" value="DUF664"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="168" mass="18737" checksum="B412DAE2CA6040D4" modified="2016-01-20" version="1">MDETQLETQRQPVPRVDDGERGTALAFLSFARECVLKKVDGLREDDLRRRLVVSDTTLLGLVQHLTDGERYWFGHVLTGAPEHADVDFSMVVPEDVEPDAVLAAYRAAIATSDAQLARVALDDHTPVPHDDGRPRTVRWVVAHMTSEVARHAGHADILREQVDRVTGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHJ4</accession>
    <name>A0A0Q8VHJ4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Cytochrome c oxidase subunit 1</fullName>
            <ecNumber evidence="9">7.1.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">ASE19_02795</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 9">Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 9">
            <text>4 Fe(II)-[cytochrome c] + 8 H(+)(in) + O2 = 4 Fe(III)-[cytochrome c] + 4 H(+)(out) + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:11436"/>
            <dbReference type="Rhea" id="RHEA-COMP:10350"/>
            <dbReference type="Rhea" id="RHEA-COMP:14399"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
            <dbReference type="EC" id="7.1.1.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Energy metabolism; oxidative phosphorylation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the heme-copper respiratory oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.9" evidence="9"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56763">
        <property type="protein sequence ID" value="KRC56763"/>
        <property type="gene ID" value="ASE19_02795"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00705"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070469">
        <property type="term" value="C:respirasome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004129">
        <property type="term" value="F:cytochrome-c oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015990">
        <property type="term" value="P:electron transport coupled proton transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006119">
        <property type="term" value="P:oxidative phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.210.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023616">
        <property type="entry name" value="Cyt_c_oxase-like_su1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036927">
        <property type="entry name" value="Cyt_c_oxase-like_su1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000883">
        <property type="entry name" value="Cyt_C_Oxase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023615">
        <property type="entry name" value="Cyt_c_Oxase_su1_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014241">
        <property type="entry name" value="Cyt_c_oxidase_su1_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10422">
        <property type="entry name" value="PTHR10422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00115">
        <property type="entry name" value="COX1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01165">
        <property type="entry name" value="CYCOXIDASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81442">
        <property type="entry name" value="SSF81442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02891">
        <property type="entry name" value="CtaD_CoxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50855">
        <property type="entry name" value="COX1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00077">
        <property type="entry name" value="COX1_CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0186">Copper</keyword>
    <keyword evidence="8" id="KW-0249">Electron transport</keyword>
    <keyword evidence="8" id="KW-0349">Heme</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="5 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="32"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="75"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="120"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="167"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="201"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="247"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="283"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="312"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="353"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="393"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="423"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="465"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="domain" description="COX1" evidence="10">
        <location>
            <begin position="20"/>
            <end position="529"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025218"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00029368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC56763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="563" mass="62540" checksum="188AEC6D7F50AF55" modified="2016-01-20" version="1">MTATLTRNAELSERKPLGQQIVRVMTTTDHKLIGNLYFGTAMFWFVAAGIMALLIRSELAYPGSQLVNEELYNQLFTMHGTIMLLLFATPLFFGFGNAIMPLQIGAPDVAFPRLNMFSYWLYLFGGLIAGAGFLTPQGAASFGWFAYTPLSDSVNSPGVGGDLWIMGLWMGGLGTILGAVNFITTIICMRAPGMTMFRMPIFVWTVLITAILVLVAFPILAGALLSLEADRQIGAHVFDTSHGGAILWQHLFWFFGHPEVYIIALPFFGIISEILPVFSRKPIFGYIGLVGATLGIAILSVAVWAHHMFVTGAVNLAFFSGMTFLIAVPTGVKFFNWIGTMWGGSVRMDTPMLWSIGFLTTFLFGGLTGIILASPPLDFHVSDSYFVVAHFHYTVFGTVVFAMFAGFYFWWPKLTGRMLDERLGKIHFWLLFIGFHTTFLIQHWLGIEGMPRRYADYLPGDNWEFMNQVSTIGAFVLASSLLPFFYNVYVSRKGPLVNTDDPWGWGRSLEWATSCPPPRHNFHSIPRIRSESPAFDLHHPEIAAIEMYDEPVAAAAGAKEVDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHJ5</accession>
    <name>A0A0Q8VHJ5_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_04070</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893003.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56986">
        <property type="protein sequence ID" value="KRC56986"/>
        <property type="gene ID" value="ASE19_04070"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1469846at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360037" evidence="2">
        <location>
            <begin position="30"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="229"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="242"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="466" mass="46862" checksum="8B221A196BB60BD6" modified="2016-01-20" version="1">MHSRTSLTLVTLVTAAVVPLTALVPGAGAAARPTCAGVRATIVGTAGADVLRGTTRRDVIVGLGGNDRILGRGGADIVCGGAGADVIVSGTTGGARLYGDAGNDRITANGGADKVSGGLGSDEVRGATGGAGGQQLRGGDGNDRILTGTARAAVVWGDLGGDRVVADSAGATVYGGAGHDFLTARAGGVAIVGGDGDDELTGADVPGRADGGPGDDLIVLGKGDDVKVHGGPGSDRLLGGAGNDRLDGDDGIDECHGGPGTDTCHGGAPGGPENSPDDPDVCAADVEVKISCHSEALPPRWTLTLEGTSNYSNGTNYTSEVSWVVSVDVEQYVRQDGVTWFFTAPTGVTGSWTGFGQNGECTIAGSGDFADGDLGVTLSLDEVSHKYTFEWGGLVLREPGRISCPWGDSDYQLSTRAADRVAYEEWNPADLTVPLKGGRTVRPDGPDSATVVSYSYVLAPTPEQAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHK3</accession>
    <name>A0A0Q8VHK3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">FHA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_03615</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892921.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56904">
        <property type="protein sequence ID" value="KRC56904"/>
        <property type="gene ID" value="ASE19_03615"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FHA" evidence="2">
        <location>
            <begin position="8"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="103" mass="10619" checksum="701D9E1FB8BF3B2D" modified="2016-01-20" version="1">MIAVRRRVLIGRSPRVQQVGGSANLPALVTVDDPYVSSTHLEVSSDGIRVTVTDTSTNGTLLARPGRTPVPLDHGVATEVGLGDVLTLSKGLTAKVVPAGGDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHR2</accession>
    <name>A0A0Q8VHR2_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Thioredoxin reductase</fullName>
            <ecNumber evidence="3">1.8.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">ASE19_13965</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <reference evidence="6 7" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">Root79</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[thioredoxin]-dithiol + NADP(+) = [thioredoxin]-disulfide + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:20345"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.8.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="4">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.8.1.9" evidence="3"/>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897061.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53442">
        <property type="protein sequence ID" value="KRC53442"/>
        <property type="gene ID" value="ASE19_13965"/>
    </dbReference>
    <dbReference type="OrthoDB" id="692968at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004791">
        <property type="term" value="F:thioredoxin-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019430">
        <property type="term" value="P:removal of superoxide radicals"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008255">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_2_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005982">
        <property type="entry name" value="Thioredox_Rdtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01292">
        <property type="entry name" value="TRX_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00573">
        <property type="entry name" value="PYRIDINE_REDOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0521">NADP</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 3" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="5">
        <location>
            <begin position="7"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KRC53442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="323" mass="34045" checksum="629595113BFDB0B5" modified="2016-01-20" version="1">MSESVRNVIIIGSGPSGYTAAVYAARAQLSPLVFEGSVTAGGALMNTTEVENFPGFRDGIMGPALMDEMRAQAERFGAELIADDIVEVDLTGDIKVVKTATDTYTARAVILATGSGYRKLDLPDEERLSGRGVSYCATCDGFFFREQHIAVVGGGDSAVEEATFLTRFGSKVSLIVRRDELRASKIMQERAFADPKLEIVWNSVVESINGADSLESLTLKDTVTGETSELPATGLFIAIGHEPRSELLVGQVDLDDNGYVLVQPGSTATNVRGVFAAGDLVDHTYRQAITAAGTGCAAALDAERYIAELDHAAATAGNVPAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-10-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHS6</accession>
    <name>A0A0Q8VHS6_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HATPase_c domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_14060</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000011">
        <property type="protein sequence ID" value="KRC53458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056897045.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000011.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC53458">
        <property type="protein sequence ID" value="KRC53458"/>
        <property type="gene ID" value="ASE19_14060"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1034663at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13581">
        <property type="entry name" value="HATPase_c_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="107"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="418"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="446"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="470"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="499"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="523"/>
            <end position="543"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="549"/>
            <end position="570"/>
        </location>
    </feature>
    <feature type="domain" description="HATPase_c" evidence="2">
        <location>
            <begin position="289"/>
            <end position="355"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC53458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="771" mass="80989" checksum="BB0425622A21762B" modified="2016-01-20" version="1">MDWARVRRQFLGDLFGDEEGSTTAAVVASIRRVVLRSMGLWQLVMVPTVLIEPLSPAGHTTLLVIHLGLLAISFVAAADRLPSWVVVVLAYVAFVADWAWVTSLDQPLLLAACWLANLAAALPSFAMRGRAALLLPLAVAVVVPTAMVLTWPDSGSVLPTSVATTGLAILVGTRIGYLVLLDFARRADEERALAETQEHAVEVRQAASRRAAEDARVLHDTVINTLGALANGGAGVADLKSVRARCARDVATVEALTGDARLPMDGNGIRSGLHVDGIRVAHRGVPDEELARREALLPPEVLQALARATTELVRNAAKHSGADEVVVDVAVRDGGLVVTVSDDGVGFDGHVPTGRGLAESVLGRFRGTDVEVSLVTAPGEGTRATLVWTGRAVPDGPGVVPDREDALQAVVDGLQRRASGLFAVGVVVIGVWLAVTNHRGRPTEEYPMVAIVALVCAIAWQTNGPGRVRAVLLPVVLAVGASLAFVLSAAAVDFGRHDIVLWQAICPTGPLLVLLGDRRWRKSAGWTGASVLATVLAVAAVTARSDTSAAASVLVAGTACLGLAIGWAGFQRLVTTVGRQVVTDQEAAARLRTEADARDAASRARRRWAAAGLGESVAILDRVARAEADPRDEQLQRACAEEETYLRQLTQLNPDLVRMGEWFARGLADARTAQTRLAVRSGGVDVDAAVAPALGELLLTAVAAVPAGEQLTSTLFPGPDALRFTLVGPGPRLSSALQGWHLPDGVELSVRNLGPQDLVEVVVPSSEGDRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHU2</accession>
    <name>A0A0Q8VHU2_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_02525</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892737.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56719">
        <property type="protein sequence ID" value="KRC56719"/>
        <property type="gene ID" value="ASE19_02525"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1578466at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="192" mass="21162" checksum="D85056182BFADCFC" modified="2016-01-20" version="1">MLREALKLVAVVLKEGETPFALAGSYGLWALGGPEPDHDVDFMVAEEDAVRARDLLAARDLVVVQPPEDWLFKVFIDEAMVDVIFRVDGEPITRSRFDDAEVREVESVRMPVLPATVLMADKLGAMEEHACDLTAILPVARAVREQVDWDEVARRTADNPYAEACLLLLRRLDIATPVQEANASVSPSPARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHV7</accession>
    <name>A0A0Q8VHV7_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glucokinase</fullName>
            <ecNumber evidence="2">2.7.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Glucose kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_02640</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ROK (NagC/XylR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.2" evidence="2"/>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC57032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893067.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57032">
        <property type="protein sequence ID" value="KRC57032"/>
        <property type="gene ID" value="ASE19_02640"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1130699at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004340">
        <property type="term" value="F:glucokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000600">
        <property type="entry name" value="ROK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004654">
        <property type="entry name" value="ROK_glcA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18964">
        <property type="entry name" value="PTHR18964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00480">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00744">
        <property type="entry name" value="ROK_glcA_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01125">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00014701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00032386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC57032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="299" mass="30111" checksum="960DAF3AA770FC67" modified="2016-01-20" version="1">MAGAVVDAAGRVLAEARVESPATDPSAMEAAAAALVAGFAAEHAVTAVGVGAAGYIASDRSTVLFAPNIAWRNEPLGADLARLTGLPVVVENDANAAAWGEFRYGAGRDVDDQLMVTVGTGVGGGIVIDGRLLRGAHGVGAEIGHLNVVPDGTLCGCGNHGCLEQYGSGTALVRAAREAAASSLLARDLVDRAGGDPAAITGPMITTAAQAGDRFAIEQFEQLGRWLGHGIASLVAVLDPAVIVIGGGVSEAGELLVAPLRASFEHELTGRGYRPTPEIRLAELGNRAGVIGAADLARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHX7</accession>
    <name>A0A0Q8VHX7_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_04085</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56988">
        <property type="protein sequence ID" value="KRC56988"/>
        <property type="gene ID" value="ASE19_04085"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1907192at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018511">
        <property type="entry name" value="Hemolysin-typ_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00330">
        <property type="entry name" value="HEMOLYSIN_CALCIUM"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="738" mass="73887" checksum="16E6833C5A2792AE" modified="2016-01-20" version="1">MGLVTASPAGAAGYPQDGWHATSVFYDGATRSTSVIDCQSMIIANMGSGQVVTPSTGVVAAMGAEVNLDAGHPRVGETFYLRVWARSISTPCGFQGVVPVFTLPSGMSIDTSAKSVCFFDGVAENDATCPQPGTAKFQSATATTGKPNSWQVLCGYASGCYESHYWPTVGGHGVEIAVPVKSTGAVNGTITGGAVINTNGVPTFHAMQAPLNVFASDTGTGVAPPPSTTNPTVPHPGYAYRVRYDNPSTRTSPTYELDTSMATTYGVLSRAEVFTNHVPGEVVFARDTSKAKVEGLPTSAQSLVDNTNQVQQLVSGTIDNSGDSFLSEFDWRPSGAGSSPGMGVTPGKTYYWRYGFIAEPAGTTLATAKITWGAVQSFAAPSAGLTCNGLAATVAIGLGELPTPGDDVIVGTSGNDSVNGLGGNDTICGQGGNDTVTGGAGNDKLYGEAGNDALVGGDGNDTIRGGDGNDVLLPGTGADTAYGEGGTDTVSYSDLTAPYAGSAPYTGVWVCSDSCGSGFTNVAGAGGLDQIGANNPTQGHIPWPERIIGSSYDDVFDPLESGTVLVGRSGNDSFTGGPGADTFQPGTGADKVAGGAGDTVSYVDLRTAVVASLVPGVSGSDVITGIVRLVGGSGADRLTGSRAADRITGGGGNDTIVGGGGNDKIVSGAGNDVARGGTGNDTVTGDAGTDRLYGDAGADLLSGGAGADSLYGAAGRDRCVGGAQKDRASGCEVRSQVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHY1</accession>
    <name>A0A0Q8VHY1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_03735</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892940.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56923">
        <property type="protein sequence ID" value="KRC56923"/>
        <property type="gene ID" value="ASE19_03735"/>
    </dbReference>
    <dbReference type="OrthoDB" id="663130at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010869">
        <property type="entry name" value="DUF1501"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07394">
        <property type="entry name" value="DUF1501"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC56923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="423" mass="43776" checksum="12B5AD0BF1DFD091" modified="2016-01-20" version="1">MTAPPPDTATDCGCPEFSRLSRRGLLRASLAAGLATSTTAAFGTAFVETSYAATRSAPAVLVVLSMRGAVDGMSLVVPHGDPVYYAARPDIAVPAAQLLAKDGFFGLHPHLAPLLPLWDAGRMAAVHATGLPAPNRSHFSAMEEIEDAAPGSSTRTGWLNRLIGRDSYASPLQAVQIGSATPPTALSGPAATVALERISELRLSGVDEWDVGGRRTRSMTTTWSGVGGPLGAGARAAMTAINDFGPVKQTPTTPANGASYPRGDFGDAMAAAARTIRGDVGAEVITVDFGSWDHHVNLGPLAWGSMQEMTTELAGVLAAFFTDLGSLASKVTVVALSEFGRRTKQNASYGLDHGWGNAMLLLGAGVNGGYHGTWPGLVNDVNGDLTVTTDYRSVLAEVVTKRLDASSATVFPGFTPEAVGVMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VHY3</accession>
    <name>A0A0Q8VHY3_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amino_oxidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_03860</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56948">
        <property type="protein sequence ID" value="KRC56948"/>
        <property type="gene ID" value="ASE19_03860"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="7"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC56948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="400" mass="41205" checksum="273543289529D333" modified="2016-01-20" version="1">MVVGAGLAGLACARALVATGREVVVLEAADAPGGRVRSDVVDGFVIDRGFQVLNTAYPALRREIDLDRLDLRRLPRGARVRRGGRLVDVPHPLASPAAPWRALASGAADVRGKVALARYVLGLLASSPAAIMARDDRPAVEVWREVLPAEVVDDVLVPFFAGVVLDPQVATSRVFADLMMRCFARGWSAVPARGMQRLPDALAADLPAGSLRLGSHVSDLAPGVVGLVGGAEVAASAVVLATDSRAAHDLLPALGEPPVLRGVRTFYFAADPWPGQSGTLVVDADGSGVATSVVLTASAPEYAADGRSLIATSVIGPGDLAAESVEATARALHEAPAGPWELVAVRDVPHALPAMPAPHAMRPAVEVAGLVVAGDHRATSSIQGALASGRRAARAVLARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VID3</accession>
    <name>A0A0Q8VID3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_08800</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000010">
        <property type="protein sequence ID" value="KRC54141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056895573.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC54141">
        <property type="protein sequence ID" value="KRC54141"/>
        <property type="gene ID" value="ASE19_08800"/>
    </dbReference>
    <dbReference type="OrthoDB" id="377638at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="6"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="418"/>
            <end position="496"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC54141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="511" mass="55191" checksum="C4B1086ADC5F145D" modified="2016-01-20" version="1">MYPGVHAATNPDHPAVVMTGSGRTITYGELDDRSARLASALHALGLAKGDVVAMLTDNAAECFEIYWACLRSGLYITPVNRNLSADEIAYIVGDSGAKALVVSAAVPVAGRVRELSPQVEHAFAFGGDVAGYASYDELLAGAGERLTDQPRGSDMMYSSGTTGRPKGVKQAMLPIQVDQPGDPIAGLLGGPFQVGPGDVYLQPAPVYHAAPLKWSGAVHSLGGTVVMMEKFDAEGALAAIEQYGVTCAQFVPTMFVRMLQLPEETRARYRHDALRLAVHAAAPCPPDVKQAMIDWWGPVVFEYYGSTEQNGITFVSSPEWLSKRGTVGKAMIGVAHICDDEGNELPAGEVGTVYFERETRPFEYHNDPEKTAEATHPVHETWTAVGDLGYLDEDGYLFLTDRKSFTIISGGVNIYPAEVEAVLTLHPAIYDVAVIGVPDEEMGQQVKAVVQLKDPSAASEELAQELIDYTRERIAHFKAPRSVDFIAEIPRLPTGKLVKRELEKLYVPTGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VJJ1</accession>
    <name>A0A0Q8VJJ1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two-component system response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">ASE19_23470</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <reference evidence="5 6" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893928.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57722">
        <property type="protein sequence ID" value="KRC57722"/>
        <property type="gene ID" value="ASE19_23470"/>
    </dbReference>
    <dbReference type="OrthoDB" id="930905at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="3"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="134"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KRC57722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="201" mass="20795" checksum="27104563855D3CA0" modified="2016-01-20" version="1">MIRLVLADDQALVRGALSALLGLEPDLDVVAEVGTGEDAVTVARDERPDVVLMDVEMPGMDGIEACAAVRSASPDTRVLVVTTFGRPGYLRRALQAGASGFVVKDTPASQLADAVRRVHQGLRVVDPGLATDSLVSGESPLTGRETDVLRAARDGSSVAAIAGRLFLSEGTVRNHLSAAIGKTGASNRAEAVLVADGNGWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VK25</accession>
    <name>A0A0Q8VK25_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD-linked oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23475</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056893929.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57723">
        <property type="protein sequence ID" value="KRC57723"/>
        <property type="gene ID" value="ASE19_23475"/>
    </dbReference>
    <dbReference type="OrthoDB" id="482388at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050614">
        <property type="term" value="F:delta24-sterol reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040165">
        <property type="entry name" value="Diminuto-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10801">
        <property type="entry name" value="PTHR10801"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="455" mass="51057" checksum="1B836D04641592DF" modified="2016-01-20" version="1">MVADRGWHQHHEAVARLARSYAAIPEGDAVRLAKRTTNLFRARAATSAPGLDVSGLDGVIEVVPDGPDGPVAEVQGMCTYEHLVDATLPHGLVPHVVPQLRTITLGGAVTGLGIESTSFRNGLPHESVLEMDVFTGAGEVVTTRPGDELFDAFPNSYGSLGYATRLRIKLERVPSYVALRHLRFDDAGLMAKTLAEIASAQEHDGEVVHGLDGVSFGPGEHVLTLARWTDEPGPTSDYAGQDIYFRSLQGCDRDRLTAYDYLWRWDTDWFWCSGAFGAQDPRIRRFWPRRLRRSDVYMRLLHLDRRFGIADRLDRRAGRPERERVVQDIEVPVEQLPEFLRWFDEEIGMRPVWLCPLVATRAWPVYPLAPGRLYVNVGFWGTVHVGPDAVNAPRNRAIEAKVHELGGHKSLYSDAFYDRATFDALYNTTHLAAVKRQHDPDDRLTTLYDKAVKSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VKG6</accession>
    <name>A0A0Q8VKG6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RNA polymerase subunit sigma-24</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">ASE19_23415</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <reference evidence="7 8" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57711">
        <property type="protein sequence ID" value="KRC57711"/>
        <property type="gene ID" value="ASE19_23415"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014325">
        <property type="entry name" value="RNA_pol_sigma-E_actinobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02983">
        <property type="entry name" value="SigE-fam_strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="11"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="6">
        <location>
            <begin position="105"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KRC57711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="171" mass="19391" checksum="76C4E6C3C49ADF9C" modified="2016-01-20" version="1">MSDADTAIETLYVAHWDQLVRLSVLLVRDQGQAEEVVQDAFVELHRRWERIDDPDRAPAYLRQTVVNRSRSALRHRGVVQRHLARQHQLDVAPGADEPVLADSRRRSVLDALQRLPRRQREVLALRYYLDLSEAEIAETLGISRGAVKSHASRGTAALRPLLAAHDLKDGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VLK4</accession>
    <name>A0A0Q8VLK4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ROK family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">ASE19_06370</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <reference evidence="1 2" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000009">
        <property type="protein sequence ID" value="KRC55057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC55057">
        <property type="protein sequence ID" value="KRC55057"/>
        <property type="gene ID" value="ASE19_06370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000600">
        <property type="entry name" value="ROK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18964">
        <property type="entry name" value="PTHR18964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00480">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KRC55057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="301" mass="29601" checksum="D40A490CE158A041" modified="2016-01-20" version="1">MTGLLVGLDIGATKILGVVARPDGEVLAQVRTGSPAGGTGVVAAAAEVVARLRAESGQPLDGVVGVGIPGLVDTAHGTVRHAVNLGVDDGFPFSARLGEATGLRVVLDNDANAAALGAATLIGQDDLVYLSIGTGLAAATVLDGVLRRGARNAAGEIGHIPVDPGGTACECGQVGCLETVASGSALAALWPSPDRPPAQALFDAAAAGDPAAAAVRDRFAAHVADAVRLVALTVDPEVVVLGGGVAHVGERLRVAVAHALAEQATGSPFLASLDLAGRVRLVPQDVPVAALGAALLGSRDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-06-17" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQB5</accession>
    <name>A0A0Q8VQB5_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">APH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_23700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000003">
        <property type="protein sequence ID" value="KRC57763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC57763">
        <property type="protein sequence ID" value="KRC57763"/>
        <property type="gene ID" value="ASE19_23700"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1457558at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="36"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC57763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="325" mass="35071" checksum="AEFAB37CEEC472B5" modified="2016-01-20" version="1">MWSDEDFLAGLRAFVADAVGEPTAIEAVSRQPWSAVWRVRTGGRTSYLKQNCPGQSHEARLVADLAQLAPDQVVPVLVADPVRDLLLTEDLGPTLQDLGRGGDVATWCSVVAESAALQRRVADSGFDPRLTVMEPSAASTYVADAVGRLAALAPEDPRRLAPAVAHRLERLLPTVDRWSDRVEELDLPLTLVHNDLHAANVVPVAGTLRFFDFGDAVVGEPLGNLLVPLYIAQGALGATHDDPRLWRIADAGLEVWSDLAPLPALRAALPAALQLARLARVESWRRCVATMTPAEQAAWGYVPARWLGLLLEAPPVEVRPTAART</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQD6</accession>
    <name>A0A0Q8VQD6_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-hydroxy-2-methylbutyryl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01050</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896699.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59642">
        <property type="protein sequence ID" value="KRC59642"/>
        <property type="gene ID" value="ASE19_01050"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1260864at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="258" mass="26140" checksum="3D2779D49401C648" modified="2016-01-20" version="1">MELNGSSAIVTGGASGIGAAAARALAAKGATVVVADLQADKGEALAAEINGVFAQVDVTDTEQIAAAVKAAAEIAPLRAVVNSAGIGWAQRTIGRDGQLESAHSLEAFTKVIAINLIGTFDMVRQAATVMSLNEPDEDGCRGAIVNLASVAAFDGQIGQASYSASKGGVVGMTLPVARDLSAAGIRLNTVAPGLIDTPIYGEGEASEAFKANLGQNVLFPKRLGTGAELASMVVECLTNSYMNGEVIRVDGGIRMPPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQE1</accession>
    <name>A0A0Q8VQE1_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_01040</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896701.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59640">
        <property type="protein sequence ID" value="KRC59640"/>
        <property type="gene ID" value="ASE19_01040"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1982226at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038468">
        <property type="entry name" value="MmpS_C"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="180" mass="19183" checksum="14A5AFF21830EAA0" modified="2016-01-20" version="1">MSIAVVVIAFVMRPHDSDHPSRVADPTTSAEPTDTVSPSPGTTARAAGKRKPKPSPEAQDPTSQQGFTVPMPSLAMPGLSGNGASYSAEKHTLTIRWSSPHPLGLIAYVIPTSQEHRRGSRMERVQHTASLTTTVYGRPDYAVAYVQAGGSPATCEIFVDGRRTAHRTTEGPYGAVWCQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VQP4</accession>
    <name>A0A0Q8VQP4_9ACTN</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">Cell division protein FtsZ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ftsZ</name>
        <name evidence="11" type="ORF">ASE19_02350</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <reference evidence="11 12" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">Root79</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7">Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer. Polymerizes to form a dynamic ring structure in a strictly GTP-dependent manner. Interacts directly with several other division proteins.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="6">Assembles at midcell at the inner surface of the cytoplasmic membrane.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the FtsZ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056892706.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56688">
        <property type="protein sequence ID" value="KRC56688"/>
        <property type="gene ID" value="ASE19_02350"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1009041at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032153">
        <property type="term" value="C:cell division site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000917">
        <property type="term" value="P:division septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051258">
        <property type="term" value="P:protein polymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02201">
        <property type="entry name" value="FtsZ_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1440">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00909">
        <property type="entry name" value="FtsZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000158">
        <property type="entry name" value="Cell_div_FtsZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020805">
        <property type="entry name" value="Cell_div_FtsZ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045061">
        <property type="entry name" value="FtsZ/CetZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024757">
        <property type="entry name" value="FtsZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008280">
        <property type="entry name" value="Tub_FtsZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037103">
        <property type="entry name" value="Tubulin/FtsZ-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018316">
        <property type="entry name" value="Tubulin/FtsZ_2-layer-sand-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036525">
        <property type="entry name" value="Tubulin/FtsZ_GTPase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003008">
        <property type="entry name" value="Tubulin_FtsZ_GTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30314">
        <property type="entry name" value="PTHR30314"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12327">
        <property type="entry name" value="FtsZ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00091">
        <property type="entry name" value="Tubulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00423">
        <property type="entry name" value="CELLDVISFTSZ"/>
    </dbReference>
    <dbReference type="SMART" id="SM00864">
        <property type="entry name" value="Tubulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00865">
        <property type="entry name" value="Tubulin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52490">
        <property type="entry name" value="SSF52490"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55307">
        <property type="entry name" value="SSF55307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00065">
        <property type="entry name" value="ftsZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01134">
        <property type="entry name" value="FTSZ_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01135">
        <property type="entry name" value="FTSZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6 7" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2 6 7" id="KW-0132">Cell division</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 6 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0717">Septation</keyword>
    <feature type="domain" description="Tubulin" evidence="9">
        <location>
            <begin position="10"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="Tubulin_C" evidence="10">
        <location>
            <begin position="204"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="321"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="332"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="18"/>
            <end position="22"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="105"/>
            <end position="107"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="140"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KRC56688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="399" mass="40978" checksum="950E71973CBAFDB4" modified="2016-01-20" version="1">MAAAQNYLAIIKVIGIGGGGVNAVNRMIEVGLKGVEFIAINTDAQALLMSDADVKLDIGRELTRGLGAGANPDVGGKAAEDHAEEIEEVIKGADMVFVTAGEGGGTGTGGAPVVARIARSLGALTIGVVTRPFTFEGARRKKSADEGIERLREEVDTLIVIPNDRLLQISDRNVSMLDAFKQADQVLLQGVSGITDLITTPGLINVDFADVKAVMSNAGSALMGIGSARGEDRALQAAEMAISSPLLEASIDGAHGVLLSIAGGSDLGIFEINEAAAMVADAVHEDANIIFGTIIDDALGDEVRVTVIAAGFDGGLPQRRDAAAVRRPQQQAAPAARTTSSAPAQSAPAQSAPAREAAPTQSAPSRESAPAEPQPVGVRNPAPLQFDDGDDLDVPDFLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2020-08-12" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VR67</accession>
    <name>A0A0Q8VR67_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_03765</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CdaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56929">
        <property type="protein sequence ID" value="KRC56929"/>
        <property type="gene ID" value="ASE19_03765"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1439158at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041522">
        <property type="entry name" value="CdaR_GGDEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17853">
        <property type="entry name" value="GGDEF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF_2" evidence="3">
        <location>
            <begin position="184"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_30" evidence="2">
        <location>
            <begin position="358"/>
            <end position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC56929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="427" mass="47590" checksum="3C7BB8A0D5EE376C" modified="2016-01-20" version="1">MPDLMTEPLTTAALVERVAASLHARVGDLSNSMRERLSTRIEELENGGAIFELLYASIEGNVENIFHLLRHDIDVDNVEPPSAAYEYARRLAQRGVPVSALVRAYRLGQQHLLENMFVEFERVEVDPATRAAGFEKVVAVTFDYIDWISQRIVTVYESERERWLAEQTSARAGRVEDLLEGRTADVDAAEQVIGYRLRVPHLGAVLWVHETGAQQDQLSRFTRAAGTIAEHLGSTRTPLVIARDRASAWAWFAVREDVVPDLDVIKSLLGEVGGPPVPMVALGRPRSGLDGFRRTHEEAMKAQQVAMVRDEPTHPVTSFGEPGLKVASLLANDLDTTRSWVHDTLGDLARDDDHHERLRHTLLLFFQHESSYTATAEAMLMHKNSVKYRIASAEKALGRPISTDRQAIELALTACDWLGRAVLVPVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VRM4</accession>
    <name>A0A0Q8VRM4_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">ASE19_02185</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <reference evidence="3 4" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000008">
        <property type="protein sequence ID" value="KRC56658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC56658">
        <property type="protein sequence ID" value="KRC56658"/>
        <property type="gene ID" value="ASE19_02185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019051">
        <property type="entry name" value="Trp_biosyn_TM_oprn/chp"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09534">
        <property type="entry name" value="Trp_oprn_chp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="72"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="121"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="154"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="181"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KRC56658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="195" mass="19856" checksum="268CCB43781F38B5" modified="2016-01-20" version="1">MVLLGIAGSGFAAVAGHKAVLTVPESTLTTAGVLARSAEDRSIEAPLAGALALVALAAWGVLLVTRGIVRRVVAVLALAAAAGIGVVLLLSAFVQDDTATRELAIRIGLNPAQADVERTPWVWIGLVCALVAVVAAGLAVRLVPEWPEMGTRYDAPTGASGADHAASAAPDVPPAERSNLDLWKSLDEGSDPTDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VVJ3</accession>
    <name>A0A0Q8VVJ3_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">ASE19_00660</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <reference evidence="2 3" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896763.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59577">
        <property type="protein sequence ID" value="KRC59577"/>
        <property type="gene ID" value="ASE19_00660"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KRC59577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="103" mass="10924" checksum="307DED7927ADE7BA" modified="2016-01-20" version="1">MLWTIIVTVVGGTVIGLIGKAVAPGDRTRFPLWLTTVCGIVGMLAGSLLYWVVAGHNNGSFDGHEATWDNTTNGIDWLRHLWQIVVAAVAVIVAAGVTGRKKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2016-01-20" modified="2019-12-11" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0Q8VYG0</accession>
    <name>A0A0Q8VYG0_9ACTN</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">ASE19_00225</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Nocardioides sp. Root79</name>
        <dbReference type="NCBI Taxonomy" id="1736600"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Actinobacteria</taxon>
            <taxon>Propionibacteriales</taxon>
            <taxon>Nocardioidaceae</taxon>
            <taxon>Nocardioides</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2015-10" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Gilbert D.G."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <reference evidence="4 5" key="2">
        <citation type="submission" date="2015-11" db="EMBL/GenBank/DDBJ databases">
            <title>Functional overlap of the Arabidopsis leaf and root microbiotas.</title>
            <authorList>
                <person name="Schulze-Lefert P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">Root79</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LMIP01000001">
        <property type="protein sequence ID" value="KRC59504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_056896836.1">
        <property type="nucleotide sequence ID" value="NZ_LMIP01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KRC59504">
        <property type="protein sequence ID" value="KRC59504"/>
        <property type="gene ID" value="ASE19_00225"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1105091at2"/>
    <dbReference type="Proteomes" id="UP000051414">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006360493" evidence="3">
        <location>
            <begin position="33"/>
            <end position="744"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="336"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="386"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="716"/>
            <end position="737"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="655"/>
            <end position="698"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KRC59504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000051414"/>
        </source>
    </evidence>
    <sequence length="744" mass="78015" checksum="85639B5FD19F9546" modified="2016-01-20" version="1">MRTLLRPLLATLLVVAALLSGTVGGTAAPAVADPTPSAPTDGATDGATDAPVDRSDNITFGIGPAHAVPEDQVVDGRPYLQYLSGPGGAVRDTVALINYGTEPIALNVYVTDAVQGTDGAFGLKAGDATPSDAGSWFRLRAPGSRKLVARARITVPGRKGGDYGRVDVPLEARIPLDATPGDHVGGVIASLVSTGKDADGARIKFDQRIGLRTYFRLSGDLEPQLAVENLHASYDWSPEAHGRDSVTVTYDVRNTGNVRMNAAQLVNLQRPFRDDIIVRPAPVADLLPGATLSVSQTVEGNFSAGPLTPLVSLIPVPVDDTVPADRTPVQGSVEVWAWQWIVAAVVVVLLLLLLLALGLRRWRGARVKVHGGRRRRTGKPAPEPQPVARVAVIGLATFLVAAVAAFVPAAHADVSKPGGGKIFLETGKLTGDPERAITDGVWGHEGKDGKLGTFVVADLTDSSGRITDASQAFWMKRFGITDFNNIGIAFVRASADGTTERPKVTKGQTAADVFEWFTDFSLGVGWAGTGEPYTDQVAVVHTKAEFADWIKFGSPAQVYDDKLVAHDALVDGEPVSAHPSGRSIQNRWPAGEKLSLVMFQYDGFDENDVPIVAVADDGRARSAWLTFRTVAGKDDPSVRTSAGYHVLGASVLPKKPSEVSKDPSAEVNGKKGATSPDAGDAATGTPDGTPAASATGSSSVIDESASFGTLWTGSGWAWPIVGLLIAVGGFLAATSLLRGRVDRP</sequence>
</entry>
<copyright>
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms Distributed under the Creative Commons Attribution (CC BY 4.0) License
</copyright>
</uniprot>